LOCUS       DASDXX010000001        65847 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.001, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000001 DASDXX010000000
VERSION     DASDXX010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 65847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 65847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..65847
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.001"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(144..1040)
                     /gene="lipA"
                     /locus_tag="U0280_000001"
     CDS             complement(144..1040)
                     /gene="lipA"
                     /locus_tag="U0280_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine/lipid phosphatase LipA"
                     /protein_id="HEM2269967.1"
                     /translation="MKHWVKVTGAGVLSATLLLGGCGAQSEEKAEANVKTEQTVKPGS
                     QIKLEGAVNVRDLGGYKTTDGLTIKPHKLIRSAELANLSDSDKKKLVNTYDLSHIVDF
                     RTSSEVAAKPDPKLTDVDYTHDSVMKDNGASTSTQDLTASLAKMDNPETFLINANKSF
                     ITDETSIQAYKDFFDILLANQDGSVLWHCTAGKDRAGFGTALVLSALGVDKNTVINDY
                     MLSNKYRALENKKAIEAVAAKTDNKKVIDGMTAVMEVRESYINAAFDEIDAKYGSMDN
                     FLKEKLGLTDAKKEQLKKAYLY"
     gene            complement(1183..2535)
                     /gene="ffh"
                     /locus_tag="U0280_000002"
     CDS             complement(1183..2535)
                     /gene="ffh"
                     /locus_tag="U0280_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEM2269968.1"
                     /translation="MAFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADV
                     NFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGTADRPPT
                     VIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPV
                     FSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEI
                     LLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIAT
                     GEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAMEQKMKDNSMTLDDF
                     LEQLQQVKQMGPLDELLKMMPEANKMKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPD
                     IINASRRKRIARGSGRPVQEINRLLKQFGEMKKMMKQMTGGGKGKKGKNPFGNFKMPF
                     "
     gene            complement(2548..2880)
                     /locus_tag="U0280_000003"
     CDS             complement(2548..2880)
                     /locus_tag="U0280_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HEM2269969.1"
                     /translation="MFEKTNRMNLLFDFYQELLTTKQKAYVSFYYLDDYSLGEIAEEF
                     EVSRQAIYDNIKRTEESLEKYEEKLGMLKKYQQREKLFSQLEAQLTKKNFLDEQVKDT
                     LEQLKNID"
     gene            complement(2993..3979)
                     /gene="ftsY"
                     /locus_tag="U0280_000004"
     CDS             complement(2993..3979)
                     /gene="ftsY"
                     /locus_tag="U0280_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEM2269970.1"
                     /translation="MTFFKKLKDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARY
                     RKVDEDFFEELEEILIGADVGFETVMELVDTLRREVQLRNISDPKDVQEVIVEKLVEI
                     YQGDEKEDEALHIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFR
                     AGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKV
                     NLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLD
                     GTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYVYGLFADMVDNEK"
     gene            complement(3994..7554)
                     /gene="smc"
                     /locus_tag="U0280_000005"
     CDS             complement(3994..7554)
                     /gene="smc"
                     /locus_tag="U0280_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEM2269971.1"
                     /translation="MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAI
                     RWVLGEQSAKSLRGGRMGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTR
                     RIYRNGDSEFLINKENCRLKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSI
                     FEEAAGVLKYKHRKKQAENKLFETEENLNRVQDILYELEGQLEPLEMQASIAKDYLFQ
                     QEELEKYEVTLLASEISSLTEKLAEVRKEFGENQTVLIKLREELHAEEAVISREKHAL
                     NETDIALDNLQERLLVETEKLEQLEGERNLQLERKKHSSENEQVYAETLAAITEKITA
                     LEEQKEVLSSSKLEKETALEIAVKAKKELEVTLAKYDDLSEEAIENRKSDYIDLRHTQ
                     TTINNDLGYIERQIGQITSRIDKLDLENSHHIDDRKDMLAQIETTKTHLTKIQSELTE
                     QMEIYREVQQTLAKQEAVFGTQERALYKHYETVQQMKSRKETLEELADDYAGFFQGVR
                     EVLKAKKEIPGILGALVELVEIPAKYQQAMETALGASAQNVVVEDDRVAREAISFLKK
                     TKSGRATFLPLSTIQPRELPAATKNALSNQPAFIALASEVISFDEKVSPVILNALGTT
                     ILAKDLKGANTLARLVNFRYRIVTLEGDVVNAGGSMTGGATKGGKSSILTRKHELGQL
                     AEKITELNEATREMESAVQLAKDSMAKKREELEETRGIGENLRLQEKELLGKLDRETE
                     NLERFNKQLQLYDIEKADGSEELNKLLERKETLLHEQVEIAKQIEATDEEIKAMTSSS
                     KALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLAS
                     LKTNLTSVHTSEESARKSIEELRKDKAETSEKLAQTRQTRAELQEKLELLEAELTQKN
                     NQISFYVEQKNNAEISIGRLEVDINNRIDRLQEAYLLTPEQAEEKILPEVNTEQARSK
                     VRLLKRSIDELGIVNIGAIEEFERIQERFDFLNRQQADLLAAKETLFKVMDEMDEEMK
                     IRFSESFEAIKTEFAIVFPELFGGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSL
                     RSGGERALTAIALLFAIIRVRPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV
                     ITHRKGTMEEADVLYGVTMQESGVSKLVSVRLEETAELIK"
     gene            complement(7577..8266)
                     /locus_tag="U0280_000006"
     CDS             complement(7577..8266)
                     /locus_tag="U0280_000006"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEM2269972.1"
                     /translation="MNQWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNER
                     LEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG
                     KGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDY
                     KTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSA
                     AQFAINQLTHR"
     gene            complement(8461..8694)
                     /locus_tag="U0280_000007"
     CDS             complement(8461..8694)
                     /locus_tag="U0280_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM2269973.1"
                     /translation="MAEVLEKVTKIIVDRLGVEESKVTLEASFKEDLGADSLDVVELV
                     MELEDEFGVEISDGDAENINTVGDAVKYIEANA"
     gene            complement(8801..9544)
                     /gene="fabG"
                     /locus_tag="U0280_000008"
     CDS             complement(8801..9544)
                     /gene="fabG"
                     /locus_tag="U0280_000008"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HEM2269974.1"
                     /translation="MTLQGKVAVVTGGSRGIGRDIAIKLAKEGANIFFNYNGSPEAAE
                     ETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNAGITRDNLLMRM
                     KEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKA
                     GVIGLTKTTARELAPRGINVNAVAPGFITTDMTDKLDEKTKEAMLAQIPLGAYGTTED
                     IANAVLFLASDASKYITGQTLSVDGGMVM"
     gene            complement(9548..10489)
                     /gene="fabD"
                     /locus_tag="U0280_000009"
     CDS             complement(9548..10489)
                     /gene="fabD"
                     /locus_tag="U0280_000009"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEM2269975.1"
                     /translation="MTKIAFVFPGQGAQKIGMGQDVAAEYPEAKKIYDDADERLGFSI
                     TEIITEGPIELLTKSENAQPALVSTSVAILRALETYGVKADYVAGHSLGEYSALVAGG
                     FLEASDAIYLVRKRGELMEAAVPNGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLAN
                     LNCPGQIVISGTTAGVEKAGGKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAE
                     VKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIG
                     SGKVLVGLIKKINRDVTVLSAGDAESVKSVAATLKGE"
     gene            complement(10482..11495)
                     /gene="plsX"
                     /locus_tag="U0280_000010"
     CDS             complement(10482..11495)
                     /gene="plsX"
                     /locus_tag="U0280_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEM2269976.1"
                     /translation="MKIAVDAMGGDHAPKEIVLGVMKAVAQYKDVEILLFGDETKINE
                     YLTDKTRVKIIHTDEKIESDDEPVRAVKRKKKASMVLAAQAVKDGEADACISAGNTGA
                     LMSTGLFVIGRIKGIDRPALAPTLPTVTGKGFVMLDLGANAEAKPEHLLQFGLMGSVY
                     AEKVRKIDRPRVALLNIGTEETKGNDLTKKSFELMKNQDAYEFIGNIEARDLLMDVAD
                     VVVTDGFTGNMVLKSIEGTGAAFLSMLKMSLLNGFKNKVAASFLKKDLMALKAKMDYS
                     EYGGACLFGVQAPVVKAHGSSNANGIFTTIRQVREMVEKQVVETIKAEVDKVKVGGTE
                     SND"
     gene            complement(11516..12085)
                     /gene="fapR"
                     /locus_tag="U0280_000011"
     CDS             complement(11516..12085)
                     /gene="fapR"
                     /locus_tag="U0280_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor FapR"
                     /protein_id="HEM2269977.1"
                     /translation="MKKYSKKDRQMKLQVAIEENPFITDEQLAEKFGVSVQTIRLDRV
                     ALSIPELRERIKHVASVNYADAVKSLPIDEVIGEIIDIQLSKSAISIFDVRSEHVFKR
                     NKIARGHHLFAQANSLATAVIPNEIALTTQATVRFVRSVNEGERIIAKAKVRPATDNR
                     AITIVDVKSYVGDEIVLKGKFEMYHATQK"
     gene            complement(12267..14315)
                     /gene="recG"
                     /locus_tag="U0280_000012"
     CDS             complement(12267..14315)
                     /gene="recG"
                     /locus_tag="U0280_000012"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEM2269978.1"
                     /translation="MSELKRIPTTEIKGIGEETAKTLKELGLSTVHDLLWNFPYRYED
                     YRLRDLSEVAHEERITIQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQPYL
                     KSKISVGETVTISGKWDKSRAQVTASKIKIGAVESEEELEGVYRLKGTLRNKTMQKYT
                     RLAFDSYSQDIEEVIPSNLLEKYQLMDRLEAVRILHFPKNNEELKQARRRMVYEEFLL
                     FQLKMQFFRKIEREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHF
                     HMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDI
                     TVGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGV
                     AQRRVLREKGEYPDVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQ
                     MLDRVIGFMEKEIDKGHQVYIICPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMH
                     GKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLR
                     GRVGRGADQSYCILIADPKTEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQS
                     GVPEFKVADMVHDYRVLEIARQDAVHMIFEEDMLENKNYEKLVALLEEEGVFTEQKLD
                     "
     gene            complement(14308..15198)
                     /gene="sdaAA"
                     /locus_tag="U0280_000013"
     CDS             complement(14308..15198)
                     /gene="sdaAA"
                     /locus_tag="U0280_000013"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEM2269979.1"
                     /translation="MFRTVAELVDIAERENLTIAEIMIKREMNISGLPREEITAAMER
                     NLDIMEEAIREGETGVTSTTGLTGGDAVLMQDYIKKGNFLSGEVLLDSVAKAIATNEV
                     NASMGVICATPTAGSAGVVPGVLFSLKDRLEMSREDMVNFLFTAGAFGYVVANNAFIS
                     GAAGGCQAEIGSASAMASAAIVAAAGGTPEQSAHAMAMTMKNMLGLVCDPVAGLVEVP
                     CVKRNALGSSQAIISADMALAGIKSRIPCDEVIEAMHRVGLQMPSSLRETAEGGLAAT
                     PTGRAIQRKIFGLSPEDKRE"
     gene            complement(15334..15996)
                     /gene="sdaAB"
                     /locus_tag="U0280_000014"
     CDS             complement(15334..15996)
                     /gene="sdaAB"
                     /locus_tag="U0280_000014"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HEM2269980.1"
                     /translation="MKFNSVFDIIGPVMIGPSSSHTAGASRIGAIARAVFNEQPSQVD
                     IHLYGSFAKTYKGHGTDVALIGGLLGFEPDDPRMKESPKLAEEWGMRIQFIEEVEEPP
                     HPNTVKLVLKHGMQQMTLIGASIGGGKVEIIRLNEFELEFTGTAPAILILHQDKFGAI
                     AAVSSVIADHKINIGQMKVSRKVKGDEALMVIEVDQQVEQALISKIAELPGIYQVASV
                     MI"
     gene            complement(16036..17694)
                     /locus_tag="U0280_000015"
     CDS             complement(16036..17694)
                     /locus_tag="U0280_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEM2269981.1"
                     /translation="MSIYQLDSEKFAAMIALGAENLAKNADFVDSLNVFPVPDGDTGT
                     NMNLSMTSGAEEVAKNDKETISAVGANLAKGLLMGARGNSGVILSQLFRGFSKAIENK
                     ETLNAEEFAGAFVKGVETAYKAVMKPVEGTILTVAREAAKAGVAAASEHQDIELVMEA
                     ILKQGKVALEKTPDLLPVLKEVGVVDSGGQGLIIIYEGFYGALTGKMAEAPDYMASMG
                     ELINAEHHRHVQDFMSTEDIHFGYCTEIIVKINENKPGQKPFDEEQFRQDLSKLGDSL
                     LVAADDEVVKVHVHVEHPGEVLNYGQQYGSLLKMKVENMREQHTEIVGDDKVPAKEKA
                     AYGIVTVSAGEGLKKLFESMGVSVVLSGGQTMNPSTEDIVKAIESANAEQVFVLPNNK
                     NIQMAAEQAAQILGDDKVQIIPTKTIPQGLTAVLSFQADQDFLANAEAMKAAIEDVAS
                     GQVTTAVRDTTVEGVEIKKDSFIGMVEGKIKVSCATLEEAAYETLEKLLDDDSEIITI
                     IVGEDADTSKAETLADKVTEAFPDVEVEIHEGDQPVYPYIFAVE"
     gene            complement(17709..18074)
                     /locus_tag="U0280_000016"
     CDS             complement(17709..18074)
                     /locus_tag="U0280_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM2269982.1"
                     /translation="MAIEIDTKLGKIDITSDVIATIAGGAAEENFGIVGMASRHQIRD
                     GLTDILRRENYTKGVIVRQEEEGIHIDMYIIVSFGTKISEVAHNVQERVKYTLEKTLG
                     ITVESVNIYVQGVRVIKES"
     gene            18373..18561
                     /locus_tag="U0280_000017"
     CDS             18373..18561
                     /locus_tag="U0280_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEM2269983.1"
                     /translation="MAKECVITGRKSRSGNKRSHAMNSSKRTWKANLQKVRILVNGKP
                     KKVWVSARALKSGKVERV"
     gene            complement(18658..19302)
                     /locus_tag="U0280_000018"
     CDS             complement(18658..19302)
                     /locus_tag="U0280_000018"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HEM2269984.1"
                     /translation="MKIINIMVGGPASEIPDLAQYTSAEISWIGVDRGAKRLLDYGIV
                     PTVAMGDFDSLSKEELAHLKTKVADVHEFPAEKDETDTEIGLSWAMEQNPDKIRIFGA
                     TGGRLDHLLANLMMLTKPKFLSAVPVVEMIDRHNYIKMYMPGSYTIEKLPDKKYVAFT
                     TMKDVTGLTLKGFAYPLENATYPVGSALSSNEFVGQMGEFSFKSGMILLTQSND"
     gene            complement(19366..20022)
                     /locus_tag="U0280_000019"
     CDS             complement(19366..20022)
                     /locus_tag="U0280_000019"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2269985.1"
                     /translation="MGKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNI
                     TFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAKAGADYITVHVEACTHLHRTLQL
                     IRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKK
                     IVDEKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
                     "
     gene            complement(20025..20900)
                     /gene="rsgA"
                     /locus_tag="U0280_000020"
     CDS             complement(20025..20900)
                     /gene="rsgA"
                     /locus_tag="U0280_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM2269986.1"
                     /translation="MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDV
                     EFQIENKTDGYILDVMSRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEK
                     EDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTA
                     VIAGQSGVGKSTLLNSLNSDLTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGF
                     SSIEWDDLQPETLQFCFPEMEDRRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKH
                     YIQILQELKNRKPRY"
     gene            complement(20919..22886)
                     /gene="pknB"
                     /locus_tag="U0280_000021"
     CDS             complement(20919..22886)
                     /gene="pknB"
                     /locus_tag="U0280_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEM2269987.1"
                     /translation="MMIGKRLSDRYKILHAIGGGGMANVYLAHDIILDRDVAVKILRI
                     DLADESNLIRRFQREAQSATSLVHPNIVSVYDVGEENDLHYIVMEHVDGMDLKQYIHE
                     NHPISYDKAVDIMLQIVSAVAIAHQHHIIHRDLKPQNILIDHDGVVKITDFGIAMALS
                     ETSITQTNSLLGSVHYLSPEQARGGMATQKSDIYSLGIVLYELLTGKVPFDGESAVSI
                     AIKHLQADIPSARAQNPEIPQSLENIIIKATAKDPFLRYQNAEEMEKDLQTCLNQDRL
                     NEPKYIFPTDDGDTKAIPIIATKDTMQNLDKTIVPEGKVAAAEVAPEENKGKKKKKMS
                     KKKKIALIVSSVIIIFIIGILLLWLLGKSPDEVAVPDVSGKTEDQAVALLQKEGFVIG
                     KTAEKNSDEVAEGKVINTDPEAGEMKEKGTKINLFVSIGSKKITMDDYTGRSYTDTKA
                     LLEEQGFNNISSEEAYSSEVEKGLIISQTPTQGTDVVAKSTDVKFVVSKGAEPISLKD
                     LRGYTKTAVEDYASPLGLKVSSKEENSNTVEKGQVISQSPSAGTAMNPGDTIEIVISA
                     GPKEKQVKEVTKTFNIPYTPSDEENPQPQKIQIYIQDKDHSMTSAYREMSITQNTSVE
                     ITFQIEEGSSAGYKIISDDKVIDEGTVPYPN"
     gene            complement(22883..23641)
                     /locus_tag="U0280_000022"
     CDS             complement(22883..23641)
                     /locus_tag="U0280_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEM2269988.1"
                     /translation="MHAEFRTDRGRIRHHNEDNGGVFENKDNQPIVIVADGMGGHRAG
                     DVASEMAVRLLSDAWKETTALLTAEEIETWLQKTIQEVNKEIVLYSESEMDLNGMGTT
                     LVAAIMAQSQVVIANVGDSRGYLLQNHVLRQLTEDHSLVHELLRTGEISKEDAMNHPR
                     KNILLRALGVEGKVEVDTFVVPFQTSDTLLLCSDGLTNMVPETEMEEILKSKRTLSEK
                     ADVFITKANSYGGEDNITVLLVERDLTQKGRDAS"
     gene            complement(23664..24998)
                     /gene="rsmB"
                     /locus_tag="U0280_000023"
     CDS             complement(23664..24998)
                     /gene="rsmB"
                     /locus_tag="U0280_000023"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEM2269989.1"
                     /translation="MKKQKTVRAIALELIIKIENNQSYSHLLINDALKKQKLNPLDKG
                     LLTELVYGTTQRKITLDYYLAPFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEA
                     GDIAKDLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQ
                     YGIEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEK
                     GSVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTG
                     MVHALDIHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGF
                     GVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL
                     RAFLEKHPEFTLEPVVLPEKLAQIKKDDFIQLLPTDIGSDGFFVSSLRKVKS"
     gene            complement(24999..25949)
                     /locus_tag="U0280_000024"
     CDS             complement(24999..25949)
                     /locus_tag="U0280_000024"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEM2269990.1"
                     /translation="MTKIIFMGTPEFSVPVLAQLASTYDVVAVVTQPDRPVGRKRVLT
                     PPPVKKAALELAIPVYQPEKLRTSSELEELIALEADLLVTAAYGQILPNSLLESPKHG
                     AINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKLDAGDMISQRKIPITDEDN
                     TGTMFDKLSKLGAELLMDTLPDFLAGKITAIPQDPEKVTFARNISREQEKIDWTKPGR
                     TIFNQIRGLSPWPVAYTTLEEKPFKIWEATYEETYEETKEDGEPGAILADKTTLKIVA
                     GDGTLIVPTVIQPAGKPKMDVHSFMTGAGRNLSKSTRFGE"
     gene            complement(25963..28356)
                     /gene="priA"
                     /locus_tag="U0280_000025"
     CDS             complement(25963..28356)
                     /gene="priA"
                     /locus_tag="U0280_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEM2269991.1"
                     /translation="MINIAKVIVDVPAMQVDRPFDYYIPEDLEELIRPGMRVSVPFGN
                     RKIQGFVIALGETEENPKLKGIDGVMDLAPVLNEELMELGDWLAEDTLSFRVSAYQAM
                     LPAALRAKYEKYFLRLDEENEELEQLFEGYETLDWKVAEARGLLKQIGKWVREGSVEV
                     VYQVKNKITSKKIRVVNCLKSPHQLAEIIEDMPKNAKAQSRVLAFFQAFEGNEITAAE
                     LKKQAETTDATIKKLVDLGILSIQEKIVSRDPYENHQFEKSESLQLLPDQQTACEKIT
                     AATDQETFLIHGVTGSGKTEIYLQTIEAKLKEGKEAIVLVPEISLTPQMVERFKSRFG
                     SEVAVLHSALSSGEKYDEWRKIERKEARVVVGARSAVFAPFENLGIIIIDEEHEASYK
                     QEDNPRYHARDVAIWRATKYQCPVVLGSATPSLESFARAKKGVYTLIELPSRVNDRAM
                     PEVSVVDMREELRKENRTEFSTELLEKIKERIAKKEQTVLMLNRRGYSSFVMCRDCGY
                     VVECPNCDISLTYHQSSNQMKCHYCGHEERVPQKCPSCEGEHIRYFGTGTQKVEESLT
                     KLIPEARVIRMDVDTTRTKGAHEKLLKSFRNHEADILLGTQMIAKGLDFPDITLVGVL
                     NADTMLHLPDFRASERTFQLLTQVSGRAGRHERTGEVIVQSYNPEHYSIEFAKKHDFI
                     GFYNHEMQLRKMGSYPPFYYLTMINVSDENEMKAIRTIQEMAQFLRGKLGPDAVILGP
                     VPSTITRIKNKYRYQCIIKYKIEPNLKKELKTLITHYQKDQQKGLTITIDVQPYVLM"
     gene            complement(28361..29560)
                     /gene="coaBC"
                     /locus_tag="U0280_000026"
     CDS             complement(28361..29560)
                     /gene="coaBC"
                     /locus_tag="U0280_000026"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEM2269992.1"
                     /translation="MQGKNILLAVSGGIAVYKAVALTSKLTQAGANVKVMMTEHAQEF
                     VPPLSFQVLSKNDVYTDTFDEKKSSVVAHIDLADWADLVIVAPATANVIGKMANGIAD
                     DMVTTTILATEAPVWVAPAMNVHMIQHPAVIRNINRLYADGVRFIEPEEGYLACGYVG
                     RGRLEEPEKIVLRIAEFFQEDKDLLRDKNVLVTAGATREKLDPVRYFTNHSTGKMGFS
                     IAESAARHGAKVTLVTTSKALPVPPGVEAIYVESAEEMYQAVDEHKVSQDIFVMTAAV
                     ADYTPAKVSDQKIKKQPGDFAIEMKRTKDILLEIGQHKTADQVVIGFAAETENLEANA
                     RKKLTSKNADMIVANNISVAGAGFSGDTNIVTFYRKDGSSKALPILDKKEVAEHIIKE
                     TANFLRK"
     gene            complement(29715..29918)
                     /locus_tag="U0280_000027"
     CDS             complement(29715..29918)
                     /locus_tag="U0280_000027"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEM2269993.1"
                     /translation="MLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQS
                     DKFVGKALEEIHAGKLVLQNDDK"
     gene            complement(29918..30535)
                     /gene="gmk"
                     /locus_tag="U0280_000028"
     CDS             complement(29918..30535)
                     /gene="gmk"
                     /locus_tag="U0280_000028"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEM2269994.1"
                     /translation="MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP
                     REGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLE
                     IEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM
                     ASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ"
     gene            complement(30554..31429)
                     /locus_tag="U0280_000029"
     CDS             complement(30554..31429)
                     /locus_tag="U0280_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HEM2269995.1"
                     /translation="MVKSMTGFGRATKEFEAFKVTIELKAVNHRYSEFLFRMPKQLAY
                     LEGKLKKIISKQIKRGRIEVFFSITGEQITKRELHIDWDLADSYYRFIKQASARYELQ
                     ELPTMADLLQEQAYLSIEEEVEASSELERLVLETLARATERLDEMRSMEGAELLLYFK
                     QHLTALEKSLEIIQAEIPNTEKHYQEKIETRLQNVVGDQFDPSIVLTEVAMLLEKADI
                     NEEVERTKSHLKQFYGIILLEEPIGRKLDFLIQEMNREVNTIGSKASSLKITEQVVEM
                     KTTLEKIREQVQNVE"
     gene            31586..33298
                     /gene="fbpA"
                     /locus_tag="U0280_000030"
     CDS             31586..33298
                     /gene="fbpA"
                     /locus_tag="U0280_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rqc2 family fibronectin-binding protein FbpA"
                     /protein_id="HEM2269996.1"
                     /translation="MAFDAMFLKAMTEELAEHGESGRIMKIHQPFSHELVLYIRKNRE
                     NKRLLISSHPSYARIQWTDDIPENPATPPMFCMLLRKYLEGAIIESITQLPNERILQF
                     SIRGKDDIGENRFCDLFVEIMGRHSNITLVDRAKNVIVDCIKHVSPAQNSYRTLLPGA
                     TYVLPPATDKLHPFEVTSEQILDRLDFSAGRMDKQLVQNFAGFSPLLAREIVFRAGNL
                     TADSLVAAFFEVIGLVNEHLGHAAVPNEWRIQNKEDYYFFPLRHVDAETTEFANLSTL
                     LDHFYIGKARRDRVHQFAHDLEKLLSNELARSRLKIEKLENTLLETEKADVYRIQGEL
                     LTANLHLMERGMEEITVENFYDDMKKMTIALDTRKTPSANAQSYFSRYQKLRNAVEVV
                     KEQIALTKEEITYLESVESQLETSGPQDVEEIRQELAEQGYLRYKQKKGSRKKATLPA
                     PEKYTSSTGLTILVGKNNKQNDYLTNKLARNNEYWFHVKDLPGSHVVIQSNDPDETSI
                     TEAAMIAAYYSKARLSATVPVDGTLVKHVKKPNGAKPGYVIYDNQTTYFVTPDEKLVL
                     ELKN"
     gene            33386..33985
                     /locus_tag="U0280_000031"
     CDS             33386..33985
                     /locus_tag="U0280_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HEM2269997.1"
                     /translation="MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITSVD
                     SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGINSLN
                     DNGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNILEES
                     WDKLESFFQGFVPVPAAKVARAFEKSVFGAQTGESYKVY"
     gene            complement(34025..34654)
                     /locus_tag="U0280_000032"
     CDS             complement(34025..34654)
                     /locus_tag="U0280_000032"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEM2269998.1"
                     /translation="MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLG
                     FPKVRQFIAKSLAEKIKQTFGEVDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEH
                     GKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGK
                     QLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNPENWGK"
     gene            complement(34651..35352)
                     /gene="pyrF"
                     /locus_tag="U0280_000033"
     CDS             complement(34651..35352)
                     /gene="pyrF"
                     /locus_tag="U0280_000033"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEM2269999.1"
                     /translation="MNKPIIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPII
                     VEKIKQQHHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAREGLE
                     IGSSSGKRPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSA
                     LEAEDIKQQNGADFLRVTPGIRLASDAADDQIRVVTPEKARLIGSSNIVVGRSITRAN
                     DPVEAYNQVLKEWNA"
     gene            complement(35349..36263)
                     /locus_tag="U0280_000034"
     CDS             complement(35349..36263)
                     /locus_tag="U0280_000034"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEM2270000.1"
                     /translation="MNRLAVEIPGLSLKNPIMPASGCFGFGQEYSKYYDLNELGAIMA
                     KAVTPEPRLGNPTPRVAETASGMLNAIGLQNPGLEHVLAHELPFLEQFETPIIANVAG
                     ATEDDYVQVCARIGESKAVKAIELNISCPNVKHGGIAFGTDPDVAHRLTKAVKNVATV
                     PVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLGMRIDLKTRKPIIANGTGGLSGP
                     AIKPVAIRMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGADAVAVGTMNFTDPFICP
                     KLISELPKRMDELGISSLQELKKERANQ"
     gene            complement(36260..37024)
                     /locus_tag="U0280_000035"
     CDS             complement(36260..37024)
                     /locus_tag="U0280_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEM2270001.1"
                     /translation="MLQTEMKVIQQTEIADKVYELILTGERVADMSPGQFLMLKPSRS
                     DLLMRRPISICSYDKTAKTCILLYRIEGDGTRDFSKLSEGDTIDVLGPLGKGFDIDQT
                     PAPKTALLIGGGIGVPPMYQLGKELAGKGVQVTFVNGFQSAKDSFYEKEMNAYGTVHI
                     ATVDGSLGTQGFVTDITNNFPEEPDVIYSCGPKAMLQAVKASFPETKTYLSLEERMAC
                     GIGACYACVCPKADDAKKQFKVCEDGPVFRADEVSL"
     gene            complement(37047..40259)
                     /gene="carB"
                     /locus_tag="U0280_000036"
     CDS             complement(37047..40259)
                     /gene="carB"
                     /locus_tag="U0280_000036"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEM2270002.1"
                     /translation="MPKRDDIKTILVIGSGPIVIGQAAEFDYAGTQACLSLKEEGYRV
                     VLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPTLGGQTGLNMAMEL
                     SAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDIIHNLDEAYTFVE
                     RIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKSIAGFKEVEY
                     EVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVSLKIIRALE
                     IEGGCNVQLALDPDSYNYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEV
                     RNPVTGTTFAHFEPTLDYVVAKIPRFAFDKFEQADRRLGTQMKATGEVMAIGRSWEEA
                     LLKAVRSLEIGADHLLLEEAENADEATLERKICFPEDDRLFFLAAALRRGQTIEQLHA
                     KTKIDLFFLYKLSKTIELENRIKENPQNQEILAEAKRAGFSDAFLATCWNVDEQAIYD
                     LRKAQNLFPVYKMVDTCAAEFESTTPYFYSTYEEENESTRSAKESVIVLGSGPIRIGQ
                     GVEFDYATVHSVWAIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEI
                     EQPLGVVVQFGGQTAINLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQP
                     AGKTATSVEEAINVATDIGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKH
                     PVLVDRYVSGQEVEVDAISDGENVLIPGIMEHIERAGVHSGDSIAVYPAQRLSSQVKN
                     TIVDYTTRLATGLNIIGMLNIQYVVDGEEVFVIEVNPRSSRTAPFLSKITEIPMANVA
                     TRVILGENLIDLGYTPGLAPEKQEIFVKVPVFSFAKLRSVDTSLGPEMKSTGEVMGKD
                     VTLEKALYKGFVASGTTMHDYGTVLLTVADRDKEEAVELAKRFNRIGFTIMATKGTAS
                     TLEEADIPVSQVKKIGENQETLIDYIRNGQVTLVVNTLTTGKRPERDGFQIRRESVEN
                     GIPVCTSLDTAEAILRVLESRSFELESMNTSEVKQPKARV"
     gene            complement(40252..41343)
                     /gene="carA"
                     /locus_tag="U0280_000037"
     CDS             complement(40252..41343)
                     /gene="carA"
                     /locus_tag="U0280_000037"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEM2270003.1"
                     /translation="MTKRILMLEDGNYFIGDAIGSEKETIGEVVFNTGMTGYQETITD
                     PSYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFPSNWRNQITLDDFLK
                     EKGIPGIAGIDTRKLTKLIRKEGTLKGILAAETANKEELLHHLRSVRLPVDQVHEVSS
                     AKAFASPGDGKRVVLVDYGVKSSILRELNKRNCYVTVVPYNTTAEEILAMHPDGVMLS
                     NGPGDPKDVPEALEMIRGIQGKLPLFGICLGHQLFALANGADTFKLKFGHRGANHPVK
                     ELATGRVDFTAQNHGYAVEKDSLIGTDLKVTHIELNDETVEGLAHKEYPAYTVQYHPE
                     ANPGPSDVNYLFDEFMEMMNGKEEGELHA"
     gene            complement(41340..42620)
                     /locus_tag="U0280_000038"
     CDS             complement(41340..42620)
                     /locus_tag="U0280_000038"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEM2270004.1"
                     /translation="MYVLKNGQVLNASGELENKDVLIQNGKVNLIADSIEVTSGEEFD
                     ATGKLIAPGFIDVHVHLREPGGEHKETILTGTQAAARGGYTTICSMPNTKPVPDSKEV
                     MESLQAKIKETAKVRVLPYASITTSLGTDELVDFEALKEAGAFAFTDDGVGVQLAGTM
                     YEAMKRAAALDMAIVAHCEDNSLIYGGVVHDGIFAEKEGLKGIPNIAESVQIARDVLL
                     AEAAGCHYHVCHISTKESVRVVRDAKRAGIRVTAEVSPHHLILDEEAIPGNDGNWKMN
                     PPLRSKEDRAALLEGLLDGTIDFIATDHAPHAAEEKNVPMEQAAFGIVGLETAFPLLY
                     THFVKTNEWTLKQLIDWMTVKPAECFKLPYGKLEEGSVADIVVLDLEKEANIDPATFY
                     SKGKNTPFVGETCIGWPVATFSEGTLVYNEGEIK"
     gene            complement(42608..43519)
                     /locus_tag="U0280_000039"
     CDS             complement(42608..43519)
                     /locus_tag="U0280_000039"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEM2270005.1"
                     /translation="MKNLLSMEALTVHEIEHLLEQAAQFKRGKKATFNEQTFAVNMFF
                     EPSTRTHTSFEVAEKKLGVEVVSFDAASSSMTKGETLYDTLLTMQAVGVNVAVIRHSE
                     ENYYAGLEKLDIAIVNGGDGCGEHPSQSLLDLFTIKEQFGTFQGLKVAIAGDIRHSRV
                     ANSNMKVLKRLGAELFFSGPREWFDESYLAYGTYLSVDEIVEKVDVLMLLRVQHERHS
                     GTDEFTKESYHEKFGLTENRAKQLKEDAIIMHPSPVNRDVEIADSLVESEKSRIVTQM
                     TNGVFIRMAILEAILKEQEMRAKLCTY"
     gene            complement(43600..44886)
                     /locus_tag="U0280_000040"
     CDS             complement(43600..44886)
                     /locus_tag="U0280_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEM2270006.1"
                     /translation="MTETTETVTKPVLDIHERPSFNKWIILSIQHLFTMFGSTIFVPS
                     VTGLSPGVALVSSGLGTLAYLGITRGKIPAYLGSSFTFIAPITALLAAKSGGGPGAVM
                     VGTFSVGVVYAIVSLIVYYAGVDWIQKVLPPIVVGPVIMVIGLSLAPSAAAMAMGTNN
                     GKYSLETLAVAVITLLATIIAMMFFKGFMGLIPILFGFTVGYLTSMAFGMVDYTLIKN
                     ASFFQIPDFSIPFVNIDPVITVTVILSMAPLAFVTMAEHMGHQLLLNRITNKNFFKDP
                     GLHRSLLADGTASIIASFIGGPPVTTYGENIGVLAITKVYSVFVIGGAAVFAILFGFI
                     GYINAVITSVPTAVLGGISLLLFGVIATSGLRMMIENKIDLSVNRNMIIASVVLVVGI
                     GGLFIKAGTFELSGMALAAVIGIILNLVLPAEHRSA"
     gene            complement(45015..45566)
                     /gene="pyrR"
                     /locus_tag="U0280_000041"
     CDS             complement(45015..45566)
                     /gene="pyrR"
                     /locus_tag="U0280_000041"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEM2270007.1"
                     /translation="MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGI
                     YLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKV
                     VLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGN
                     ERVEVRLTDVDNEEDAVIINKNE"
     gene            45798..46028
                     /locus_tag="U0280_000042"
     CDS             45798..46028
                     /locus_tag="U0280_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270008.1"
                     /translation="MAISKAKKKRQKLIREGHLNPEIKRSPFALIDLSSKQTKTKKGY
                     LYSKKRKNHQEDDSFFVYFFKFSHFLHINNLK"
     gene            46116..46940
                     /locus_tag="U0280_000043"
     CDS             46116..46940
                     /locus_tag="U0280_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2270009.1"
                     /translation="MGIMNSLLQQKEMVVKDWLTYYVSVDDPYIFTLKNDHRLMDETG
                     FVLENLFIGMTEDLGKMNAFARELGKAQFITSLGISRILFHIRLLEEFLLDYASEIKT
                     KSANYRELYLFSIKLHQVFSSFTQNLIEGYTRANEQKIIQKENQIIKESTKLIWIAEN
                     VFLLPLIGRITDERAKQLTETALVEVCEQPVNYLIIDLSGVQLESPNIGKYIEYFFSS
                     LKLVGVTPIITGMQPQTAKVMVQVNLTEQHGIKTFATLRQATKTLMKEKEARNARK"
     gene            complement(46958..47869)
                     /locus_tag="U0280_000044"
     CDS             complement(46958..47869)
                     /locus_tag="U0280_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM2270010.1"
                     /translation="MQNETLIIEESHARERVDKVIAEMMGKSRSAIQLMLKNGDITVN
                     GELAKPNYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPS
                     AGHASGTLVNALLFHCDDLSGINGKIRPGIVHRIDKDTSGLLMVAKNDHAHESLAKQL
                     KDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVRDGKEARTHFEVLERLP
                     GYTLINCKLDTGRTHQIRVHLKYIGHPLAGDPKYGPKNTIKGNGQFLHAAKLGFDHPT
                     TKERMMFEAPLPSSFEKALKSLRQEEY"
     gene            complement(47869..48333)
                     /gene="lspA"
                     /locus_tag="U0280_000045"
     CDS             complement(47869..48333)
                     /gene="lspA"
                     /locus_tag="U0280_000045"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEM2270011.1"
                     /translation="MYYYLITLAVIALDQLTKWIVVQNMEIGQKIEVIPGFLYWTSYR
                     NDGAAWSILEGHMWFFYLITVVVIGIIIYIMQKYAKGKRLFSISLAFILGGAIGNFID
                     RVLHQEVVDFVQTVWGNYYFPIFNVADAALSVGVVLMLVYVFVDDRKTKGIK"
     gene            complement(48415..49698)
                     /locus_tag="U0280_000046"
     CDS             complement(48415..49698)
                     /locus_tag="U0280_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM2270012.1"
                     /translation="MQKFFNKVFRLNEHKTNFRTEFLAGMIGFFTVAYIIVVNSSILA
                     EAGVPYQGAVLATIFISALGCLIMGFWANAPLILMPGMGINALFAYTLVQGMGLSWQV
                     ALAAVTMSGLLFMILAFTPLAGKLNEAIPLILKQAITVGLGLFLIFLGLEKGGIVTRG
                     KHAIIAVGDLGDPFVLATLVTLLLTMILVIRKIPGAFLWSLIIGTVVGVMFGVAGKAG
                     GASISVAPWSDVLFKADFSGMASVGFWSAVFTMTMVIVFETVGLTNGQVRQLKQTEKL
                     PRILKASSLTAFLSGLFGTSPTISALESGSMFASGAKTGLATITTGLFFIASLFLMPV
                     LSFIPNSAIAPILIIIGMSMLQEFKEMDLSNAAETFSALLIIVLIPLTYSIADGIAAG
                     FIAYPILRAFTKNEERTSPVMYVIAALFLLQFIIQ"
     gene            49872..51242
                     /locus_tag="U0280_000047"
     CDS             49872..51242
                     /locus_tag="U0280_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2270013.1"
                     /translation="MQKTVTYGAKWKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSN
                     QALAGVAIGSSFWAPVNAAFSGLLMAITPIIAQLIGAKKEKQVKNTVHNGLYIALFLA
                     FILILINFLVVPTILTHMPVTAEVAGIARHFLNGICIGIPAFFISAILRSFIDSLGLT
                     RVTMLITLCTVPFNIFLNYCFIFGNFGFPEMGGAGSGYATGITYWLVVLVSVILIQTQ
                     TRLRKFGIFKGLTALRFSKIKEIIGIGVPNGLTILFETSIFSAVTILMGAFGTETIAA
                     HQSANSVCTLLYAFPLSVASTLTILGGYETGAKRLKDAKQYRHIGMAAAIFIGCVNGA
                     ILFFFRDIIAGFYTNDPALSNLIMHFLVYAILFQFADAVLSPVLGALRGYKDVTVTSI
                     VAFISYWLIGLPVGYGLSFTNLGPFGYWIGLSTGLFVAAFILSIRVRKTEQKLSFNTK
                     DAEISS"
     gene            complement(51258..52190)
                     /locus_tag="U0280_000048"
     CDS             complement(51258..52190)
                     /locus_tag="U0280_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HEM2270014.1"
                     /translation="MKKIIVVALFALVVVLAGCSSQNSDSKKTDGKLNVVATYSILAD
                     IVKNVGGDKIELHSIVPVGVDPHEYDPLPANIQSAADADLIFYNGLNLETGNGWFDRM
                     LETADKSRDDKEQVVELSKGVKPKYLTEKGKTSETDPHAWLDLHNGIIYTENVRDALV
                     KADPDNADFYKENAKKYINKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGL
                     KAAYIWEINTESQGTPDQMKQIVGIVEKEKVPNLFVETSVDPRSMESVSKETGVPIFA
                     KIFTDSTAKKGEVGDTYLEMMQYNLDKIHDGLAK"
     gene            complement(52187..53029)
                     /locus_tag="U0280_000049"
     CDS             complement(52187..53029)
                     /locus_tag="U0280_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM2270015.1"
                     /translation="MLFLEGLMQYSFLQKALITSVTVGIVSGVIGSFIILRGMSLMGD
                     AISHAVLPGVAISYMMGMNFFIGAATFGIAAALGIGFVNQKSRIKNDTAIGIVFSAFF
                     ALGIILISFAKSSTDLYHILFGNVLAVRSSDMWMTIIIAIIVISLVALFYKEFLVSSF
                     DPVMAEAYGLNVKFLHYFLMLLLTLVTVSALQTVGIILVVAMLITPAATAYLLTNKLS
                     KMIVLASTFGAVSAIIGLYFSYIFNLASGAAMVLVATIIFFIAFLFAPKQGLLFSKKR
                     EVIE"
     gene            complement(53033..53755)
                     /locus_tag="U0280_000050"
     CDS             complement(53033..53755)
                     /locus_tag="U0280_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM2270016.1"
                     /translation="MEIQGLTIAYKQKVAIDNVTLQIASGKLTGIVGPNGAGKSTLLK
                     GMMGLIPREQGQVTLADKPLTYWRKKIAYVPQRSEVDLTFPITVFDMVLLGTYPALGL
                     IKRPGKKEKQLALDALEQVEMTGFMKRQIGELSGGQLQRVFIARALAQHAEIFFLDEP
                     FAGIDMTSEALIMRLLKKLRDNGKTIVVVHHDFHKVAAYFDDIILLNKKLVAHGPVEQ
                     TFTEEKIQFAYGDAPVAFATGV"
     gene            complement(53915..54331)
                     /locus_tag="U0280_000051"
     CDS             complement(53915..54331)
                     /locus_tag="U0280_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2270017.1"
                     /translation="METYLEIETLIKRIFNSFRHEVEAVLDKRLSGSEYRVLSLISSG
                     LTKTSELAKTLDVSASHITAITDTLVEEKFITRHRSEVDRRIIELKLTPNAEEFVKEI
                     DKKKKEMIVKRFAVFSEYEQAEFRKLLKKLADGSIK"
     gene            complement(54368..55858)
                     /locus_tag="U0280_000052"
     CDS             complement(54368..55858)
                     /locus_tag="U0280_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEM2270018.1"
                     /translation="MEESPQNEPNNVEKDEEQKAKPGNGYIKMKLFPFIMLLFAFVFV
                     TALVTTIVMSLGDDKQVKVSIPERKEFTKLYDVYDEITSKYYKDTKSTTMIDGAINGM
                     VNSLDDPYSTFMSKKESSEFNDTISASFEGIGAEIQEKDGAIVIVSPIKNSPAEKAGL
                     RPQDIITQVDGKSVKGDTATEATQKIRGEKGTKVTLTIQRSNEDKPFDVTITRDEIPI
                     ETVYKEMGSDKIAHVTISTFSETTYDELEKALKSLEKDGMKGLVLDLRGNPGGLLDQA
                     VSISSLFVPDGKIVVQEQDKDGDKSAIKADSSSHGDYKVKVPTTMLIDGGSASASEIL
                     AAAAKESGGIKLVGTKSFGKGTVQTATTLSDDSTLKLTVAKWLTPNSEWIHEKGITPD
                     VVVNMPDYATMTIPSSTKVYKNGDFGDDVKTIETLLKALDYNVGKVDGLYDTDTEYAV
                     QRFQAANKLDVTGIMTGVTTDKLVELTQKHLKETDPQLQKAKALVK"
     gene            complement(56013..56219)
                     /gene="copZ"
                     /locus_tag="U0280_000053"
     CDS             complement(56013..56219)
                     /gene="copZ"
                     /locus_tag="U0280_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone CopZ"
                     /protein_id="HEM2270019.1"
                     /translation="MEKLTLNVEGMTCSHCEARVTKALSEVNGVKSAVVSLDEGTATV
                     EFEKGQVTEDALIDAVEEAGYEVA"
     gene            complement(56232..58445)
                     /locus_tag="U0280_000054"
     CDS             complement(56232..58445)
                     /locus_tag="U0280_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEM2270020.1"
                     /translation="MSDKYVRQDLNIFGMTCAACSTRIEKSLNKADGVEKANVNLVTE
                     NAAVYYDPEVTSTEDLIKVVKHAGYDAAEKMSKEEKDAVLEKNFKKEVRRFILSAVLS
                     LPLLLTMVTHIPYIHEMAFAETIGNWINPTIQLVLATIVQFYIGWRFYDGAYKALRGK
                     SANMDVLVALGTSAAYFYSVVEYIRHMIDPSVMPHYYFETSAVLITLILLGKLLESYA
                     TSRTTESIAGLLELQAKEATVIREGKEWLVPVDSLKIGDIILVRPGEKVPMDAEIISG
                     ETSIDEAMITGEPVPVEKKPGDSVIGATINFDGAFQAKITKRMEETVLESIIRLVEEA
                     QGIKAPIQRLADRISGIFVPIVLGIAAVTFIIWYLVTGTVDGSLEAAIAVLVIACPCA
                     LGLATPTAIMAGTGKGAESGILFKGGEHLERTSKVDTIVFDKTGTLTEGKLEVSDKKA
                     ANDHFFPYLFLMEQQSEHPIAKAIIKMLEPENIDASAVKQGKIRAKAGHGMTGNLDDS
                     KVELGAYRYVSSLTTIPKEDDELIESWMHAGKTVVAMAIDGVYAGALALSDTPRPEAK
                     EAIQKLKAQGIKTAICSGDQSVVVENMAKDLGIDMFFAEQLPNDKSALVEKLQQDGHI
                     VAFVGDGINDAPALAASDIGISIGTGTDIAIETGDVTLVSHRLTLIPETIELSKATMR
                     NIRQNFFWALAYNCAGIPIAALGLLAPWVAGLAMAFSSVSVVTNALRLKRYKFKS"
     gene            complement(58460..58753)
                     /gene="csoR"
                     /locus_tag="U0280_000055"
     CDS             complement(58460..58753)
                     /gene="csoR"
                     /locus_tag="U0280_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-sensing transcriptional repressor CsoR"
                     /protein_id="HEM2270021.1"
                     /translation="MKHDQPIVPRKEDETKLLQNRLRRIEGQIRGIAQMVEDDRYCTD
                     ILVQISAANKALKNVGLQVLEHHTAHCVVDAAKNGEDDVMEDLLKAIRQFSKT"
     gene            complement(58877..59701)
                     /locus_tag="U0280_000056"
     CDS             complement(58877..59701)
                     /locus_tag="U0280_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HEM2270022.1"
                     /translation="MSSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQT
                     LAELEKDPLYPYIDKQNKLTEKDGIKYIENEENMLVLANKDYSLQPTYTPPDLVRPNV
                     TFSFGSQQVEKAQLRKEAATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNA
                     KGDQKAREAVAYPGTSEHQTGLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFI
                     LRYMKGREAITKYQYESWHYRYVGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK"
     gene            complement(59759..60460)
                     /gene="deoD"
                     /locus_tag="U0280_000057"
     CDS             complement(59759..60460)
                     /gene="deoD"
                     /locus_tag="U0280_000057"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM2270023.1"
                     /translation="MSVHIEAKQGEIAETILLPGDPLRAKYIAETFLEDVVLFNQVRG
                     MLGFTGTYKGEKVSVMGTGMGIPSISIYVNELIQSYDVKNLIRVGTMGGIQADVKVRD
                     VVIAQAASTDSQINRNTFAGVDFAPVADFSLLKKAYDAGIEKGLSLKVGNVFSADRFY
                     NDQLDKQQLADYGVLGIEMEAAALYTLAQKYGRRALAILTVSDHIFTGEETSAEERQT
                     TFNDMIVVALEAAIK"
     gene            complement(60472..60705)
                     /locus_tag="U0280_000058"
     CDS             complement(60472..60705)
                     /locus_tag="U0280_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270024.1"
                     /translation="MGRSFYHFLMTYRDPKLTDQKTEFANNAYRDHSFPKQTRNYHIL
                     CDYLEFNAPYLPGMSIFDELWDAYLLDEEKNKH"
     gene            complement(60768..61673)
                     /locus_tag="U0280_000059"
     CDS             complement(60768..61673)
                     /locus_tag="U0280_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2270025.1"
                     /translation="MLKIAVVGLGGIAQKAYLPVFAEMENIEVHLYTRDAQKLKHLSE
                     KYRFDHYHQSIHSMIESGVNAAFVHSSTASHPEVIRTFLANHIPVYVDKPIADNLSEV
                     EELTRLAEEQNTLLMTGFNRRYAPKYQELKALTDTNMIIMQKNRAAQPGEARTFIYDD
                     FIHVIDTVRFLLDAQIEQLHVVPVWQENLLASITVQITAGGKVATAIMNRDSGVNEER
                     LAVMTPSAKYEVENVTETHIYEGTTERFERFGDWETTLYKRGFVSIIQAFLTAVRNGE
                     KAPISKEDALETHRLAEEILRKIEN"
     gene            complement(61756..62193)
                     /gene="msrB"
                     /locus_tag="U0280_000060"
     CDS             complement(61756..62193)
                     /gene="msrB"
                     /locus_tag="U0280_000060"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEM2270026.1"
                     /translation="MDESKKNERLQQLTDIQYNVTQKAGTERPFQNEFYDNEAKGIYV
                     DIVSGKPLFSSNDQYDAGCGWPSFTKPIDEAEVIEHRDLTHGMIRTEVKSADADSHLG
                     HVFPDGPQDKGGLRYCINSAALRFIPVDKLEEEGYQAYKKIFE"
     gene            complement(62200..62733)
                     /gene="msrA"
                     /locus_tag="U0280_000061"
     CDS             complement(62200..62733)
                     /gene="msrA"
                     /locus_tag="U0280_000061"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEM2270027.1"
                     /translation="MTKESLEKATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNP
                     TYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDPTDAAGQFLDRGDSYRPVI
                     FYHNEEQKEIAEKSKAALDASGRFKKPIVTEIAKAETFYPAEEYHQDFYKKEKAHYEG
                     YQVASGRAAFIDANWKG"
     gene            complement(62769..63383)
                     /locus_tag="U0280_000062"
     CDS             complement(62769..63383)
                     /locus_tag="U0280_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HEM2270028.1"
                     /translation="MQRETRSAPKKPKRNYWKWVCITLISVLLISAGWIYVAVFKLSP
                     QDEPTPSLISNKSMVEFQTSTTKADLNQLISSYIEDFSKDQDIGYKVFVANNVNFTAE
                     AEIFGEPVELRLKFSPEVVDNGNVELTLKDMSVGALPLPVSYVMNYVSKNYKFPDWVT
                     IMPKKEKIYLSLDKLKLQGGTKVRADTLNLKKDDISFTLLVPVK"
     gene            complement(63399..64184)
                     /locus_tag="U0280_000063"
     CDS             complement(63399..64184)
                     /locus_tag="U0280_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2270029.1"
                     /translation="MTKKKWLWLTGSVLVIALLVGAVFGIKYYKESKEIPINLVAMGD
                     SLTEGVGDENKGGGYVGIIPKELEEESNIPSVKTSNYGVSGNKITQLEKRLKTNKDFQ
                     EDVKNANVITITIGGNDVMAILQSRLLNVNVDDFTKANKEFQQELETLLKDIRSYNKD
                     AAIFLMGIYNPYTTYFSDIKQFDEIISDWNKASKKTIQQDSNAYFVPIAKVLEDRNAD
                     NKDKPNSLLSDDYFHPNHRGYEKMTSELDKAIVKQLNEGNIPK"
     gene            complement(64199..65038)
                     /locus_tag="U0280_000064"
     CDS             complement(64199..65038)
                     /locus_tag="U0280_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM2270030.1"
                     /translation="MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDI
                     TPEEFMVRMAETKELPKSSQPAIGSFVEAYEKYTAEGYEILSIHLTEKLSGTVNAARQ
                     AADMVEGNITVVDCDYTARGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIV
                     VVTLDNLIKGGRVGRMQGFFGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIK
                     DEPKKIQHLDVVHADGLNLADDFIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMY
                     YTD"
     gene            65217..>65847
                     /locus_tag="U0280_000065"
     CDS             65217..>65847
                     /locus_tag="U0280_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEM2270031.1"
                     /translation="MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLY
                     LTSFLIYGISLMLLYICSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQ
                     GTLGWTLFGVIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPT
                     GFWLLATGGIMFTVGAVFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV"
BASE COUNT        17566 a        14261 c        11858 g        22162 t
ORIGIN      
        1 gttcctaata gggtattaag acctatagca gttaacatta cacgaattgt ctttcaattg
       61 tatacaaatc tttttaaaat ggttcttcac ttcagattct atttgtacgc aaaaaaaaag
      121 ccctttttca agggcttact tttttaataa agataggctt tttttagttg ttctttttta
      181 gcatcggtta gtccgagttt ttcttttaaa aagttgtcca tcgaaccata ttttgcatca
      241 atttcatcaa aggctgcatt gatataagat tcacgaactt ccattacggc tgtcattcca
      301 tcaatcactt ttttattatc tgtttttgct gcaacggctt caattgcttt tttattttcg
      361 agggcacgat atttattgga aagcatataa tcgttaatga ctgtgttttt atccactcct
      421 aatgctgaca gaacgagggc ggttccaaat ccagcacgat cttttccagc tgtacagtgc
      481 caaagaacag atccatcttg gtttgctaat agtatatcaa aaaaatcttt ataggcttgt
      541 atcgaagttt catctgtaat aaagctctta ttggcattaa tgagaaatgt ttctggatta
      601 tccattttgg ctaggctggc agttaaatct tgtgtgcttg tagatgcacc attatctttc
      661 atcacagaat cgtgcgtata gtcaacatct gtgagttttg ggtctggttt ggctgcgact
      721 tctgaacttg ttcggaaatc aactatatga gacaaatcgt atgtatttac gagtttcttt
      781 ttatccgaat cacttaagtt agcgagttcg gcacttctaa tgagtttatg tggcttgata
      841 gttagtccat ccgttgtttt gtatccgcct aagtcccgga catttacagc accttctaat
      901 ttaatttggc ttcctggttt gactgtttgc tcggttttaa cgtttgcctc cgctttttct
      961 tctgactgcg ctccgcatcc tcctaatagt aaagtcgcgc ttagcacccc tgcccctgtt
     1021 acttttaccc aatgtttcat tctttctcct ccttttgtaa gcttcttgta cattatagca
     1081 acgcaatttg ttggttgaat gaagggtttg taaagaaatg attttaggga tgttaaggta
     1141 tgaaaaaaag ccaaaacccg gaatgggttt tgacttttag aattaaaatg gcattttgaa
     1201 attgccgaat ggatttttgc cttttttgcc tttgccgcca ccagtcattt gcttcatcat
     1261 ttttttcatt tcaccaaatt gttttaggag acggttaatt tcttgaaccg gacgtccgct
     1321 accacgtgca atccgttttc ttctacttgc attgatgata tctggattgt ctttttcatt
     1381 tttggtcatt gacttgataa ttgcttcaat atgacctagt tgtttatcat cgacgttcat
     1441 gttgtcgagg cctttcattt tgtttgcctc tggcatcatt ttaagtagtt catctagtgg
     1501 tcccatttgt tttacttgtt gtaactgttc taagaagtca tctagcgtca tgctgttgtc
     1561 tttcattttt tgttccatag ctttcatttt ttctgtatct acatcggttt gcgctttttc
     1621 aatcagggaa agcacatcgc ccatgccgag aattctggaa gccatacgat ctggatggaa
     1681 agtttctaga gcttccattt tttcaccagt cgcgataaat ttaattggtt tgccagtgac
     1741 ggaacgaatc gaaagcgctg caccaccacg tgtatcaccg tctaatttgg ttagcacgac
     1801 acctgtaatt tctaattgtt cgttgaagct ttgcgccacg ttgacagcat cttgcccagt
     1861 catggaatcg acaacaagca ggatttcggt tggcgttgca atttctttca cttgttttaa
     1921 ctcatccatt agcgtttcgt caatatgaag acgacccgct gtatcgataa taacataatc
     1981 taaatgttct tcttttgctt tagcaatagc ttgtttggcg atttctaccg ggcttacttg
     2041 gtctcctaga gaaaataccg gcatatctaa ttgcttgcca agtgtttcta attgtttgat
     2101 tgcggcaggt cggtaaatat ctgctgcgac aagtaatggt ttgcggttat attttttgcg
     2161 taataaatta gcaagtttgc cggaagtcgt tgttttacca gccccttgta aacctaccat
     2221 cataatcacg gttggtgggc ggtccgctgt tccgattttg ctttcttctc cgcccattaa
     2281 gcttgttagt tcttcttgaa cgattttgat aacttgttgg ccgggtgtta ggcttttcat
     2341 aacgtccgcg ccgacagcac gttcgcttac tgttttaata aattgtttaa cgactttaaa
     2401 gttaacatcg gcttcaagta gagcaagacg aacttcacgc atcatttctt ttacgtcagc
     2461 ttcgtttact ttccctttgc cgcgaatttt gttcattgtt tcttggagtc ttccagctag
     2521 tccttcaaat gccatgattc tggcctccta atcgatattt ttaagctgtt cgagcgtatc
     2581 tttcacttgc tcgtccagaa aattcttctt ggttaattgt gcttctaatt gactaaaaag
     2641 tttttctcgt tgttggtatt tttttagcat ccctagtttt tcttcgtatt tttctaggct
     2701 ttcttcggtt cttttaatat tatcataaat ggcttgtcta ctcacttcaa attcttcagc
     2761 aatttcgcct agcgagtaat catctagata ataaaaagaa acataggctt tttgttttgt
     2821 tgttagtaat tcctggtaaa aatcaaataa taaattcata cggtttgtct tctcaaacaa
     2881 ggcatttcac ctctctcctt ttaaaggata cggggaaatc gcgggaatgt caaggaaggt
     2941 taaacaaaag agaaaaaagc cagaatgacg agaatcattc ggctttctct gattattttt
     3001 cgttatcaac catatcagca aataagccat acacatattc atttgcatca aaggcttgta
     3061 ggtcgtccat ttgttcccca agaccgacga atttcactgg aatatctagt tcattgcgaa
     3121 tggcgataac aataccaccc ttggcagttc cgtccagttt tgtgaggata atgcctgtta
     3181 cgtcggttgt ttctttaaat tgttttgctt gaacgaaagc attttggcca gttgtagcat
     3241 caagtactag taaaacttcg tgcggcgcat taggaatttc acgcgtaatg acacgtttta
     3301 ctttttctaa ttcgttcatt agattgactt tgttttgtaa acggccagct gtatcgcaaa
     3361 gtaaaacgtc cgctttgcgt gcttttgctg cttgaacggc atcaaacatc accgctgcag
     3421 ggtcgcttcc ctcggcttgt ttaataacat cgacgccggt acgctcgccc cagacttcta
     3481 attgatcaat ggcaccagca cggaatgtat cgccagcagc taacatcact tttttacctt
     3541 cttgtttaaa gcgatgagcc atttttccga tggaggttgt tttaccaacc ccattcacac
     3601 caacaaacaa gataacggtt agcccgtctt cttcgatatg aagtgcttcg tcttcttttt
     3661 cgtctccttg gtaaatctcg actaattttt cgactatcac ttcttgtacg tcttttggat
     3721 cactgatgtt tctaagttga acttcacggc gtagcgtatc gactagttcc atgacagttt
     3781 caaaaccaac gtctgctccg ataaggattt cttctagttc ttcaaagaaa tcttcgtcga
     3841 ctttacgata gcgagcaacc atttcgttaa tttttccgga aaagttgccg cgtgttttgg
     3901 ataagccatc tttaaatttt ccagaaacag aatcagtttg ctgagttatt ttatctttta
     3961 attttttaaa aaaggtcatt ttgtttactc cttttattta atgagttcag ctgtttcttc
     4021 taaacgaact gatactagtt tggagacgcc ggactcttgc atggtgacgc cgtataatac
     4081 gtcggcttct tccattgttc ctttacggtg tgtgatgacg atgaactgcg tgccggactc
     4141 gaattgcttt aagtaacggc tgaatcgtgt aacattggct tcatctaaag ccgcctctac
     4201 ttcatccaaa atacagaatg gtactgggcg aacgcgaatg atagcaaata ataatgcaat
     4261 cgccgttagc gcacgttctc cgccagaacg aagcgatagg ttttgtaatt ttttcccagg
     4321 tggttgaacg acgatatcaa tcccggttgt taggagattt tctggatcaa ggagcaccag
     4381 ttccgcgcta cctccaccaa atagctcagg gaaaacaatc gcaaattcgg ttttaattgc
     4441 ttcaaaactt tcactaaaac gaattttcat ttcttcgtcc atttcgtcca tgactttaaa
     4501 aagggtttct tttgcggcaa gtaagtccgc ttgttgcctg tttaggaagt caaaacgttc
     4561 ttggatacgc tcaaattctt cgatggcacc aatattgacg atacctagtt catcaataga
     4621 acgttttaat aagcgaactt tcgaacgagc ttgttcggta tttacttctg gcaagatttt
     4681 ttcttcggct tgctctggtg ttagtaagta agcttcttgc aaacgatcaa ttcggttatt
     4741 aatatctact tctaaacgac cgatgcttat ttctgcatta tttttttgct ccacgtaaaa
     4801 actgatttga ttattttttt gtgttaattc ggcttctaat agttctaatt tttcttgtag
     4861 ttcagcacga gtttgtcttg tttgcgcaag tttttcgctt gtttcagcct tatctttgcg
     4921 cagttcttca atggattttc tagctgattc ttcgcttgta tgaacgctag ttaagttggt
     4981 ttttaaggaa gctagttttt gttcagccgc ttctttttgt tcgtaatttt catgtagcgt
     5041 tgtcgttact cgctcgacgg cttctgtagc agattgaagt tgctctcgtt tagcggcgat
     5101 ttgcgctttt aaggatgaca gactttctaa atctgctgca cgtttgcttt ctagtgcttt
     5161 gcttgaactt gtcatcgctt tgatttcttc atcggttgct tcgatttgtt ttgcgatttc
     5221 gacttgttca tgtagtaaag tttcttttcg ctccagtagt ttgtttaatt cttcgctacc
     5281 gtctgctttt tcaatatcgt atagttgtag ttgtttattg aagcgctcta gattctcagt
     5341 ttctcggtct agttttccaa gtaattcttt ttcttgtaaa cgtaaatttt caccgattcc
     5401 tcgtgtttct tcgagttctt cacgtttttt cgccatgcta tctttagcta gttgaaccgc
     5461 agattccatt tcacgagtgg cttcgtttaa ctcggtaatt ttctctgcta attggcctaa
     5521 ctcatgtttt ctcgttaaaa tagacgattt tccgcctttg gttgctccac cagtcatcga
     5581 accaccggca ttcacgacgt caccttctag tgtcacaatg cgatacctaa agttgactaa
     5641 gcgagcgagc gtattcgccc cttttaaatc tttcgccaaa atcgttgtcc ctagagcatt
     5701 caaaataacc ggagaaactt tttcatcaaa agaaatgact tcacttgcaa gtgcgataaa
     5761 agcaggttgg ttgcttaaag cgtttttcgt tgcagctgga agttcgcgag gttgaatagt
     5821 cgaaagtggt aagaaagttg cgcggccact tttcgttttc ttcaagaaac tgatggcttc
     5881 acgagcaacg cggtcatctt ctacgacaac gttctgcgca cttgccccaa gcgctgtttc
     5941 catggcttgt tggtacttcg cgggtatttc tacgagttct actaacgcac ctaaaatccc
     6001 tggaatttct tttttcgctt ttaagacttc ccggacacct tggaaaaagc cagcataatc
     6061 atccgccaac tcctctaatg tttccttccg cgatttcatt tgttgcactg tttcataatg
     6121 tttataaagc gcacgttctt gcgttccaaa aacagcttct tgtttcgcta aagtttgctg
     6181 tacttcacgg taaatttcca tttgttccgt aagctcactt tggatttttg ttaaatgtgt
     6241 tttggttgtt tctatttgag cgagcatatc ttttctatca tcgatatgat ggctattttc
     6301 taaatctaac ttgtcaattc gactcgtgat ctgaccgatt tggcgctcaa tataacctaa
     6361 atcattatta attgtcgttt gcgtgtggcg cagatcaata taatcacttt tgcggttttc
     6421 gattgcttct tcggataaat catcgtattt ggcaagtgtt acttctagct cttttttcgc
     6481 tttgaccgca atttcaagtg ctgtttcttt ttcgagtttt gagctactta gaacttcttt
     6541 ttgctcttcc aaggcagtaa ttttttccgt aattgccgcc agtgtttctg cgtaaacttg
     6601 ttcattttcg ctactgtgct ttttacgttc taattggaga tttcgctctc cttctagttg
     6661 ttccagtttt tccgtttcaa ctaaaagacg ttcttgtaaa ttatcaagcg caatatctgt
     6721 ttcattcagt gcatgttttt cgcgtgaaat aaccgcttct tcggcatgta attcttcgcg
     6781 tagcttaatt aaaaccgttt gattttcacc aaattcttta cgaacttcgg ctagtttttc
     6841 tgttaaggaa ctgatttcgc tcgcgagtaa agtcacttcg tatttttcta gttcttcttg
     6901 ttggaataaa taatctttcg caatagaagc ttgcatttca agcggctcca attgtccttc
     6961 taattcgtat aaaatatctt gtactcggtt taaattttct tcggtttcaa ataatttatt
     7021 ttctgcttgt tttttacggt gtttatattt taatacgccg gctgcttctt caaaaatcga
     7081 gcgacgttct tctggtttgc tgttcagaat ttcatcgatt ttcccttgcg aaataatcga
     7141 aaaagactct cttccaagtc cagagtccat aaataaatcg acaatatctt tcagtcgaca
     7201 attttcttta ttaattaaaa actcgctatc accattacgg taaatacgtc tagtaacagc
     7261 tacttcgcta taatcaagtg gtaaaaaatg gtcttcattt tcgaggataa gtgacacttc
     7321 cgcaaaatta attggtttcc gtgtatcact tccagcaaaa ataacatcac ccattcggcc
     7381 accacggagc gatttagcgg actgctcacc aagtacccag cggattgctt ctgtaatatt
     7441 acttttcccg ctgccatttg gccctacaac tgcagtcatg ccgggcacga aatctatcgc
     7501 aactttgtca gcaaaggatt taaagccatt catttctaat cgttttaata acatgtccgg
     7561 acacctccat ttttgtttat ctgtgtgtta gttggtttat agcaaattgt gccgcacttt
     7621 gttctgcttg tttttttgtt ctgccgctgc cttttccgag tacttgtccg ttaacaatta
     7681 cttgggcatc gaatgcttta ttgtgcgctg gtcctgtttc gccaaggata tcatattcga
     7741 tcaagacatc acggtcccgt tgaacaattt cttgcagttg cgttttataa tccactgttt
     7801 gtagatatgc ccctgcatca atttttggaa aaataacacg ttctaaaaat gtcacaactt
     7861 tgtcaatccc attatctaaa taaagcgcgc cgataaaaga ttcaaataca tccgccagaa
     7921 gtgccggacg agttcttcca ccggcttttt cttccccttt accaagtcgt acgtatttag
     7981 aaaaatgtac tgcttctgca aactcgacta aagaaggctc acaaacaatt gctgcgcgca
     8041 tttttgtcat gtgtccttct gccatatctg gatatttgtt aaatagataa ttcgatacag
     8101 tgagttcaag gactgcatca ccaagaaatt ctaagcgttc attatctttc acattttccc
     8161 ggcggtgttc gttcacatat gaggaatgtg tgaatgcttg ttttaataat tcaacatctt
     8221 taaaatcgaa tccaacgctt tcttgtaact cttcccattg attcatttca cttgctcctc
     8281 tctttaataa gcaagttcat tttctaaaca gccactagca aaaagctgct tagaaaatga
     8341 accaacaaaa tctcgtgacc ttgaaaaaga ggccacctgc gctacttgtc tcgcgtgcgg
     8401 aagttaccac agcaaagata agtaacacgg gcaccctcat ttatccggtc acataaagtt
     8461 ttatgcgttc gcctctatgt acttcactgc atcaccaact gtgttaatgt tttcagcgtc
     8521 gccatcagag atttcaactc cgaactcgtc ttcaagttcc attactaatt caacaacatc
     8581 tagagaatct gcacctagat cttctttgaa ggaagcttct aaagttactt tggattcctc
     8641 gacacctaaa cggtcgacga tgatttttgt aactttttct aatacttctg ccatttttca
     8701 cttcacctcc ctccaagtat tatataggat tatttctcct acgtaaacaa aaatatttaa
     8761 agtaatgcga gccaattaaa ttcgcattca ttaaccaatt ttacatcacc attccgccat
     8821 caacagatag tgtttgacca gtaatatact tcgaagcatc gctcgctagg aaaagaactg
     8881 catttgcaat atcttccgtt gttccataag caccaagcgg aatttgcgct aacattgctt
     8941 cttttgtttt ttcatctaat ttgtcggtca tatctgttgt aatgaaacca ggagcaacag
     9001 catttacgtt aataccacgg ggcgcaagtt ctcgagcagt tgtttttgtt aaaccgataa
     9061 cgcccgcttt acttgctacg taatttgctt gacctgcatt accaatcaaa ccaacaacag
     9121 atgccatgtt gataatttta cctgcgcgtt gtttcatcat tgtacggctt actgcttttg
     9181 tacaaaggaa agttcccttt aggttgatat taattacgtc atcccattcg tcttctttca
     9241 tacgcattaa taagttatca cgtgtaattc ccgcattatt cacaagaatg tccacacgac
     9301 caaagcgttc gattgcttgt ttgaaaaagg catctacatc ttcagcaatg gctacgtttg
     9361 ctttcattgc ttctacttca acaccatgtt cagcaacgag ttttgctgtt tcttctgcag
     9421 cttctgggct accattgtaa ttgaagaaaa tatttgcgcc ttctttggct aatttaatgg
     9481 caatgtcacg tccaattccg cgtgatccac ctgttactac tgctactttt ccttgtaaag
     9541 tcattaatta ttctcctttc aatgtcgctg caacgctttt cactgattca gcgtcacctg
     9601 ctgacagtac agttacatca cgattaattt ttttaattaa gcctactaag acttttccag
     9661 aaccaatttc gacaaacgta tctacgccgt ttttaattaa ttcttcgacg atatcttccc
     9721 ataatactgg agaatagatt tgcttgatta gtttatcgct aatttcggat ttatccgtag
     9781 tttctttagc gtccacgtta ttaaccactg gaatctgacc atcagaaatt ttaacctctg
     9841 ctaaaacatc acggaaagca agtgcggctg gttccattaa gctagagtgg aaaggtccgc
     9901 taacagcaag tggtaatacg cgttttgcgc cactttcttt tgcttttccg cctgcttttt
     9961 caacgccagc tgttgttcca gaaataacga tttgtcctgg gcagttaagg ttagcaagtt
    10021 gtactgcatc gccttcttta gttacttctt cggtgattgt ttttaatgtt tcccggtcta
    10081 caccaagaac tgcagccatt gcgccagcac catttggtac agctgcttcc attaattcac
    10141 cgcgcttacg tacaaggtaa atcgcatcac ttgcttctaa aaatccgcca gcaacaagcg
    10201 cactatattc accaaggcta tgtcccgcta cgtaatcagc tttcacacca tatgtttcta
    10261 aagcgcgtaa aatagcaaca cttgtggaaa ctaaagctgg ttgtgcgttt tcggatttcg
    10321 ttaataattc aattggacct tctgtaataa tttctgtgat tgaaaacccg agtctttcgt
    10381 cagcatcatc atagattttt tttgcttcag gatattctgc tgctacatct tgtcccatgc
    10441 caattttttg tgctccttga ccgggaaata caaatgcaat tttagtcatt agattctgtt
    10501 cctcctactt ttactttgtc tacttctgct ttaattgttt cgaccacttg tttttcaacc
    10561 atttcacgta cttgacggat tgtggtgaaa ataccattcg cattggatga accgtgggct
    10621 tttacaactg gagcttgaac accgaacaaa caagcaccgc catattcgct ataatccatt
    10681 tttgctttta aagccattaa atcttttttc aagaagcttg ctgcgacttt atttttaaag
    10741 ccattaagca aactcatttt tagcatactt aggaaagcgg cgcctgttcc ttcgatggac
    10801 ttaagtacca tattaccagt aaatccgtcg gttacaacaa catctgctac atccattaat
    10861 aaatcacgcg cttcgatgtt gccgataaat tcgtaagcgt cttgattttt cataagttcg
    10921 aatgattttt ttgttaaatc atttcctttt gtttcttctg ttccaatgtt taaaagcgct
    10981 acgcgaggac gatcaatttt acgcactttt tctgcgtaaa ccgagcccat taaaccaaat
    11041 tgtaataaat gttctggttt tgcttccgca tttgctccta aatcaagcat aacaaagcct
    11101 tttcctgtca cggttggtag tgtaggtgct agtgctggac ggtcgattcc tttgatacga
    11161 ccaataacaa acaatccagt agacattaaa gcccctgtgt ttccagctga aatacaagca
    11221 tctgcttctc cgtcttttac cgcttgggca gcaagtacca tagaagcttt tttcttccgt
    11281 tttacagcgc gaactggttc gtcatcactt tcaatttttt catcggtatg tataattttt
    11341 acgcgggttt tatcagttaa atattcattt atttttgttt cgtctccaaa aagaagaatt
    11401 tcaacatctt tatattgggc cacagctttc atcacaccta aaacaatttc ttttggtgca
    11461 tgatctccac ccatcgcatc tacagcaatt ttcattatac gtcagtcctt tattttcatt
    11521 tttgcgttgc gtgatacatt tcaaatttgc ctttaagtac aatttcatct ccaacatagc
    11581 ttttcacgtc tacgattgta atagctctgt tgtctgttgc cggacgtact tttgcttttg
    11641 cgatgatgcg ttctccttcg tttacagaac gaacaaagcg aacggttgct tgtgttgtta
    11701 gagctatttc atttgggatg acggcggttg ctaaggaatt agcttgggca aacaaatgat
    11761 gcccacgagc gattttattt cgtttaaaaa catgctcact acgcacatca aaaatcgaaa
    11821 tagcgctctt gctaagttga atatcaataa tttcaccaat cacttcatcg atgggaaggc
    11881 tttttactgc atcggcataa ttgacactcg caacatgttt gattcgctct ctgagttcgg
    11941 ggatggaaag tgctactcta tctagacgaa tagtttgcac actgacccca aatttttctg
    12001 caagctgctc atctgttatg aaaggatttt cttcaatcgc aacttgaagt ttcatttgac
    12061 gatccttttt agaatatttt ttcatgcacg tatcctcatc tctttttttg tgaaaggtat
    12121 taataccagc tactaaacag taggtaaaaa aaggaagtta cctctgtagg ataacattca
    12181 gaacttcctt tgtatttatt ggtactttaa tatgttatta aaaatcaagc caagttgcaa
    12241 gtttttttaa agattgttac ataggcttaa tctagttttt gctccgtgaa gacgccttct
    12301 tcctccagaa gtgctactaa tttttcgtag tttttgttct ctaacatatc ttcttcaaag
    12361 atcatgtgaa cggcatcttg gcgggcgatc tccagtaccc ggtaatcgtg aaccatatct
    12421 gctactttga attctggaac accactttgt tttctgccga agaaatctcc tgggccacga
    12481 agttctaggt cgcgttcgct gacaacgaag ccatcgtttg tttctgacat aatcatcata
    12541 cgttctttgc cgacttcggt ttttgggtca gcaattaaaa tacagtaaga ctgatctgct
    12601 ccgcgcccaa ctcggccccg aagttgatgc aactgagcta aaccaaaacg gtcggcatcg
    12661 taaatgacca tcatggtagc gtttggcacg tttacaccaa cttccactac tgtggtcgaa
    12721 acaaggcaat caattttttt attattaaag tcgcgcataa tttgctcttt atctgctggt
    12781 aatagtttac cgtgcattag acctggaata tatttagtgc cccatttatt ttgtagaatg
    12841 ttgaaaacgt ctatcgcatt ttgcacatct agtttttcag attctccaat tagcggacaa
    12901 atgatgtaga cttggtggcc tttgtcgatt tctttttcca taaaaccgat aacgcgatca
    12961 agcatttgat gttttaccca gtaagtttca atttcttttc gaccagctgg gagttcatcg
    13021 ataatcgata catccatttc gccaaacgct gtaatggcaa gcgttctagg aattggggtt
    13081 gcggtcataa ataaaacatc cggatattcc cctttttcac gaagaacacg acgctgcgct
    13141 acgccaaatc gatgttgctc gtcagtaata actaaaccta ggcgatgata aattacttcg
    13201 tcttgaatta atgcatgcgt tccgattaaa acatcaatgg agccattttc aagcattgct
    13261 agtaattctc tgcgctgttt gcctttcaca ctactcgtta gtaagccaac tgtaatatca
    13321 aaaggttgca acagctctac taaggaattc gcatgttgct cggctaaaat ttcggttggc
    13381 accatgagtg cgctttggaa gccacttttg gcagctgcat acatggcaat agatgctaca
    13441 actgttttac ccgatcccac gtctccttgt agcaaacgat tcatatgaaa gtgtgataac
    13501 atatcaccgc aaatttcatt gactactcgt ttttgtgctt ttgttagtgg aaatggcaag
    13561 gaatcaatgt aatggcgcaa atcttctaca tcgtaattaa tcgaaattcc acctgatttc
    13621 tcgcgttcaa ttttacggaa aaactgcatt ttcaattgga ataacaagaa ttcttcgtag
    13681 accattcggc gcctagcttg tttcaattcc tcattatttt taggaaaatg cagaatgcgc
    13741 actgcttcta ggcgatccat taattgatac ttttctaata aattgcttgg aataacttct
    13801 tctatatctt gactataact atcaaaagca agtctcgtat atttttgcat tgttttattg
    13861 cgtagcgttc cttttagacg gtaaacgcct tctagttctt cttcactttc gacagcgcct
    13921 atttttattt tgctggctgt aacttgggcg cggctcttat cccatttgcc agagattgtc
    13981 actgtttcgc caacacttat tttacttttt aaatagggtt ggttgaaaaa atcgattttg
    14041 atgacttgcc cttcagttga gacgcggaaa gagagcttgg attttttgcg accgtagaaa
    14101 gcaacggttg cctctgttag gacttcgcct tgaatggtaa tccgttcttc atgcgccact
    14161 tctgataaat cccgcaaccg ataatcctca tagcgatacg ggaagttcca aagcaaatca
    14221 tgcacggtgg ataaacctaa ctcttttaac gttttcgctg tttcttcgcc aattcctttg
    14281 atttcagttg tcgggattcg tttaagttca ctcacgctta tcttctggcg acagtccaaa
    14341 aatcttccgc tgaattgcac gtccagtcgg tgtagccgcc aatcctcctt ctgccgtttc
    14401 tcttaaagag cttggcattt gtaagcctac gcggtgcatt gcttcaatta cttcatcaca
    14461 tggaatgcgg ctcttaatac ctgcgagcgc catatctgct gaaataattg cttgcgagga
    14521 accaagggca ttacgtttaa cacatggaac ttctacaagc cctgctacag gatcacacac
    14581 aagtccaagc atatttttca ttgtcatagc catcgcgtgt gctgattgtt ctggcgtccc
    14641 accggctgct gctacaatcg ccgctgaagc catcgcactt gctgagccaa tttctgcctg
    14701 acagccacca gccgctccac ttataaaagc attattcgca acaacatacc caaaggcacc
    14761 tgctgtgaat aaaaagttca ccatatcctc acgcgacatt tctagacgat cttttaagga
    14821 aaaaagtacg cccggtacaa cccccgcgct tcctgccgtt ggtgttgcgc aaataacgcc
    14881 catcgaagca ttaacttcat tcgtcgcgat tgcttttgct acagaatcaa gtaacacttc
    14941 gcctgataag aagtttcctt ttttgatata gtcttgcatt aggacggcat ctccgcctgt
    15001 taagccagtt gtagaagtaa ctcccgtctc accttcacga atagcttctt ccataatatc
    15061 taaattccgt tccatcgcag ctgttatttc ttcccgcggt aaaccagaaa tattcatttc
    15121 acgcttgatc ataatttcag caatagttaa gttctcgcgt tcagcgatat ctactaattc
    15181 tgctacagtt ctaaacattg tccacactca ctttctttac cctttaccaa catacctgat
    15241 ttacaactca aaataaagcc aaatgcacgt tttgtttacg cacatttggc tttacacaaa
    15301 tcgagcgaaa gccaccgatt tactagaaaa ctactaaatc atgacacttg ctacttgata
    15361 aatccctggt aattcagcaa ttttgctaat taaagcttgt tcaacttgtt ggtctacttc
    15421 aatgaccatt aacgcttcat cgccttttac tttacgggac actttcattt gtccgatatt
    15481 gattttatgg tcggcaatca cggaagatac tgcagcaatc gcgccaaatt tgtcttgatg
    15541 taaaataagg atagctggag cagttccagt aaattctagt tcaaattcgt ttaagcgaat
    15601 aatctctact tttccgccac caatggatgc accaattaat gtcatttgtt gcataccatg
    15661 ttttaatact agctttaccg tatttggatg aggtggctct tctacttctt cgataaactg
    15721 aatgcgcatg ccccactctt cagcaagctt cggagattct ttcatgcgcg gatcatctgg
    15781 ctcaaagccg agcaatccgc caatcaaagc tacatcagta ccatgacctt tataggtttt
    15841 ggcaaaagaa ccatataaat gaatatctac ttgggatggt tgttcattaa aaacagctcg
    15901 tgcaatggca ccaatacgac tagcgccggc agtatgagaa cttgacggac caatcattac
    15961 aggaccaata atatcaaata cgctattaaa tttcactaaa atcatccttt cttctattca
    16021 tttacagagg cgtctttatt ctacagcaaa aatatacgga taaactggtt ggtcgccttc
    16081 gtgaatttct acttcgacat cagggaatgc ttctgttact ttatcagcaa gcgtttctgc
    16141 ttttgaagta tctgcatctt caccaacaat gatagtaatg atttcgctat catcatcaag
    16201 tagtttttcc agtgtttcgt aagcggcttc ttctaatgtt gcacaactaa ctttgatttt
    16261 gccttcaacc ataccgatga agctgtcttt tttgatttcg acaccttcta ctgttgtatc
    16321 acgtacagct gtcgttactt ggccacttgc tacgtcttca attgctgctt tcattgcttc
    16381 tgcattagct aggaaatctt gatctgcttg gaatgaaaga acggcagtaa gtccttgtgg
    16441 aattgttttt gtagggatga tttgaacttt atcatctcct agaatttgtg ccgcttgttc
    16501 cgcagccatt tggatatttt tattatttgg aagaacaaaa acttgttctg catttgctga
    16561 ttcaattgct tttacgatat cttctgtact tggattcatt gtttgaccac ctgaaagaac
    16621 aacagacact cccatgctct caaatagttt cttcaatcct tctccagctg aaacagtaac
    16681 aataccataa gccgcttttt cttttgctgg cactttgtca tcaccaacaa tctcagtatg
    16741 ctgttcgcgc atattttcca ctttcatttt aagtagacta ccgtattgct gaccgtagtt
    16801 tagtacttca ccaggatgtt ccacatggac atgtactttt actacttcat cgtccgcagc
    16861 tactagtaga gaatccccca gtttacttaa atcttgacgg aactgttctt cgtcaaaagg
    16921 tttttgaccg ggtttgtttt cgttgatttt cacgataatt tcggtacagt aaccaaaatg
    16981 aatatcttcc gttgacataa agtcttgcac atgacgatga tgttcggcat taattagctc
    17041 acccatagat gccatatagt caggagcttc agccattttg ccagttagtg cgccataaaa
    17101 tccttcataa ataatgataa gaccttgtcc accactatcg acaacaccaa cttcttttaa
    17161 aactggaagt aaatctggtg ttttttctaa tgcgactttc ccttgtttta aaattgcttc
    17221 cattactaat tcgatatctt gatgttcact tgctgctgca actccggctt ttgcggcttc
    17281 acgagctacg gttaggatgg ttccttcgac tggcttcatg acagctttgt aggcagtttc
    17341 cacgccttta acgaaagcac cagcaaattc ttccgcgttt aacgtttctt tattttcaat
    17401 cgctttagaa aatcctcgga aaagttggga taaaataaca ccagagttcc ctcgggcacc
    17461 cattagtaag cctttagcca agtttgctcc aacggcacta attgtttctt tgtcattttt
    17521 cgcaacttct tctgctccac ttgtcatcga tagattcata ttcgttcccg tgtcaccatc
    17581 tggaaccggg aagacattca atgaatctac aaaatcagca ttttttgcta aattctctgc
    17641 tccaagcgct atcattgctg caaatttctc tgagtctaac tgatatatac tcacttacat
    17701 aatcctcctt aagattcctt gattactcgg acaccttgaa cataaatatt cactgattcc
    17761 actgtaatac cgagtgtttt ttctagtgtg tatttgacgc gttcttgaac attatgcgca
    17821 acttcggaaa tttttgttcc aaagctaaca atgatataca tgtcaatatg aataccttct
    17881 tcttcttgtc taactataac acctttagta taattttctc ttcttaaaat atctgtcaaa
    17941 ccatcacgaa tttggtgtct acttgccatt ccaacgatgc caaaattttc ttcggcagct
    18001 ccaccagcga ttgttgcaat aacatcacta gtaatgtcaa ttttgcctag ctttgtgtcg
    18061 atttcaattg ccattctata ttcctcccta cggattatat tctcgttcga ttatttttta
    18121 gtattgattt ttatttaatt ataaagtcgt ccctacctat tttactataa tcagggtcct
    18181 ttggaaagca tatcctccat ttgcctgatt aaagctactt ttatgctgtc aagtaaaaat
    18241 tctttgcact attttcgcat atcctcttgc aaagtatact tgtttatgat aaattattct
    18301 agtgtatgaa aaacaaatgg ataggttatt ttaaataaat tatccgaaga gctctgtaag
    18361 gaggggtaaa ctatggctaa agaatgtgtt attacaggcc gcaaatcacg ttccggtaac
    18421 aaacgttccc acgcaatgaa ctccagcaaa cgtacttgga aagctaactt gcaaaaagta
    18481 cggattctgg ttaacggcaa acctaaaaaa gtttgggtat ctgctcgtgc gcttaaatct
    18541 ggtaaagtgg aacgcgttta attgaaggag aaatcaagtg cagcgacaat tatgtcggtg
    18601 cattttttct ttgccttaaa ataaaaaaat acaggccgag tgcacctgta tttctagtta
    18661 atcattactt tgtgttaata aaatcattcc acttttaaag gaaaattccc ccatttgtcc
    18721 cacaaactca ttacttgata gagctgaacc tactgggtaa gtggcatttt cgagcgggta
    18781 ggcgaatcct tttagtgtca gtcctgtcac gtctttcatc gttgtaaatg cgacatattt
    18841 cttatcaggt agtttttcaa tagtgtagct acctggcata tacattttga tgtagttatg
    18901 acggtcaatc atttctacaa ctggcacagc gcttaaaaat ttcggcttgg tcaacatcat
    18961 tagattcgca agtagatggt ctaagcggcc tcctgttgca ccaaaaatgc gtatcttatc
    19021 tggattttgc tccatcgccc aacttaatcc aatttccgta tctgtttcat ctttttctgc
    19081 aggaaattcg tgtacatctg ctactttggt tttcaaatga gccagttctt ctttagagag
    19141 tgaatcaaaa tctcccatcg caacggtcgg tacaattcca tagtctaaca aacgttttgc
    19201 tccgcggtcc acgccaatcc aactaatctc tgcgctcgta tattgtgcta aatcaggaat
    19261 ttcggacgca ggtccaccaa ccatgatatt aattattttc atacttgagt ccccttcttc
    19321 cctaacaaat aagactggaa cagaggtccc agccctacta ttagtttact cgcctacaat
    19381 ggcacgtaat ttatcaattg gtgtttgacg atttttattt ccataaatgt aactaccagc
    19441 tacaaagaca tttgcgccag catcacggca taattttgct gtttcatgat ccacgccgcc
    19501 atctacttca atttcgatat ctaagccttt ttcatccact attttcttga aagcactaat
    19561 tttttctagt acttctggaa tgaatttttg tccgccaaaa ccaggattta ctgtcataaa
    19621 tagaaccata tccagttcat ttaaaacgtg ttgtaaaaca tcgattggtg tggctggatt
    19681 aagcactgcg ccagctttca caccgtaaga acggattaat tgtaatgtgc gatgaagatg
    19741 cgtacaagct tcgacatgca ccgtaatgta gtctgctccc gcttttgcaa attctggaat
    19801 gtatgtatcc gggttttcaa tcattaaatg aacatcaagt ggtagttttg tttctgggcg
    19861 aatggcttga acaacagcag gaccaaatgt aatatttgga acgaaatgtc cgtccataac
    19921 gtcaatatga atgtagtctg caccgcaatt ttctacttct ttaatatctc ttgcaagatt
    19981 tgcaaagtct gcacttaaaa tcgaaggagc tatttttccc attcttaata cctcggcttt
    20041 ctgtttttta attcttgtaa aatttggata tagtgtttgt agcgaaattc tgctatttca
    20101 tttgcttcaa cagctgtttt tacagcgcaa ttcggctcat tgtcatgcat gcaacctcgg
    20161 aatttacagc cactacgacg atcttccatt tccggaaaac aaaattgtaa tgtttcaggt
    20221 tgcaagtcat cccattcgat tgaactaaag ccaggcgtat cagcgacaaa tccatcgcca
    20281 atcggcatta gttcgacgtg tctcgttgta tgttttccgc gaccgagtgc gttcgaaatt
    20341 tctgctgttt ttaaagttaa atcactattt aagctattta ggagagtcga ctttcctaca
    20401 ccagattgcc cagcgataac tgcagttttc ccactaatat agtctttaat ggcttcttta
    20461 tccggttcat cattggtaac aaaaacatca taaccaatcg cttcgtaaat gtctttgtaa
    20521 acagcaatct gttctttttc agattctgat gccaagtcca ttttactaat gcaaataact
    20581 ggcttgatat cttccttctc aatagctact aaaaaacgat ccgcaagatt cgtggaaaaa
    20641 tccggctcta ctgccgaaaa caccaaaatt gcaatatcaa tgtttgccac gggaggccgc
    20701 acaagggcat tctcccggga cattacatct aaaatgtaac catctgtttt attttctatt
    20761 tgaaattcta catcatcgcc tacaagtgga gaaatatttc gttttctaaa attccctctc
    20821 gctcgacatt gatatacttt tccttccgaa aatacatagt aaaatccgct caacgctttg
    20881 ataatttgtc cttccagcac atttcctccg ttctattttt aatttggata agggactgta
    20941 ccttcatcga ttactttatc atcactgata attttgtagc ctgcgctaga accttcttca
    21001 atttggaaag ttatttctac cgaggtattt tgtgtaatgc tcatttctcg gtaagcgcta
    21061 gtcatgctat ggtctttatc ttgaatgtag atttgaattt tctgtggttg tgggttttct
    21121 tcatcacttg gtgtatatgg gatgttaaat gttttagtta cttctttgac ttgtttttct
    21181 tttggtcctg cagaaatgac aatctcgatt gtatcaccag gattcattgc agttccagct
    21241 gatggggact gcgaaataac ttgtcctttt tcaactgtat ttgaattttc ttccttactt
    21301 gaaactttga gtccaagtgg tgaggcataa tcttctacag ctgttttggt atagccgcgt
    21361 aaatctttaa gcgaaattgg ttctgcacct ttacttacga caaatttcac atcggtagat
    21421 ttagcgacta cgtccgttcc ttgagtcggt gtttggctta taattaagcc tttttcaact
    21481 tcagaactat atgcttcctc cgaagaaata ttattaaacc cttgttcttc aagtaacgct
    21541 tttgtatctg tgtagcttct tcctgtatag tcgtccatag ttattttttt agaaccaatg
    21601 cttacgaata aattgatttt tgttcctttt tctttcattt ctccagcttc tgggtcggta
    21661 ttaattactt tcccttccgc tacttcatca ctattttttt ctgccgtttt acctatgaca
    21721 aagccttctt tttggagtag cgctactgct tggtcttccg ttttaccaga aacatccggc
    21781 acagcgactt catcagggct cttgcctaaa agccacagta gtaaaatacc aatgataaaa
    21841 atgataatga cagaagaaac aatgagagca attttctttt tcttactcat ttttttcttt
    21901 ttcttacctt tgttctcttc gggagcaact tcagccgctg ctacttttcc ttctgggaca
    21961 atcgttttgt caaggttttg catcgtgtct ttcgttgcga tgattggaat tgcttttgta
    22021 tcaccatcat ctgttgggaa aatatattta ggctcattta aacggtcttg atttaaacaa
    22081 gtttgcaagt ctttttccat ttcttccgcg ttttgataac gtaaaaatgg atcttttgcc
    22141 gttgctttaa tgataatatt ttctaagctt tgaggaattt ctggattttg cgctcttgct
    22201 gatggaatat ccgcttgcaa atgcttaata gcaatagaaa ctgcagactc accgtcgaaa
    22261 ggaacttttc cagttaatag ttcatatagc acgattccta gtgaatagat gtctgatttt
    22321 tgagtagcca ttccaccacg tgcttgttct ggtgataagt aatgcaccga acctaacaaa
    22381 gaatttgttt gtgtgatgga tgtttctgaa agtgccatcg caatcccaaa atcagtaatt
    22441 ttcactacgc catcatgatc gattaaaata ttctgtggtt ttaaatcacg atgaataatg
    22501 tgatgttgat gggcaattgc caccgcagaa acgatttgaa gcataatatc tacagcttta
    22561 tcgtaactga ttgggtgatt ttcgtgaata tactgtttta aatccattcc atccacatgt
    22621 tccattacaa tataatgtaa atcattttct tcaccaacat cgtaaacact aacaatatta
    22681 gggtgaacaa ggctcgttgc tgattgagct tcccgttgaa accgacgaat aaggttgctt
    22741 tcatcagcta aatcgattcg taaaattttt actgcaacat ctctatcaag aataatatca
    22801 tgcgccaaat acacattggc cattccgccg ccgcctattg catgtaaaat tttatatcga
    22861 tcacttaatc gcttaccaat catcatgaag catccctccc tttctgcgtc agatctcgtt
    22921 cgactaacag cacagttata ttatcttctc ccccataaga attagctttt gtaataaata
    22981 catctgcttt ttcagaaaga gttcttttac tttttaaaat ttcttccatt tctgtttctg
    23041 gaaccatatt cgttaaacca tcggaacaaa gtagtaacgt atcgctcgtt tgaaaaggga
    23101 caacaaatgt gtccacttct acttttcctt ctacaccaag tgcgcgtaaa agaatatttt
    23161 tccgcggatg attcatggca tcttctttgc tgatttcgcc tgttcgaagg agttcatgta
    23221 ctagtgaatg atcttcggtt agttgacgta agacatgatt ttgaagtaaa taacctctgc
    23281 tatctcctac gttggcaata acgacttgtg actgcgccat aattgctgca acaagtgttg
    23341 ttcccatacc atttaaatcc atttcacttt ccgaataaag aacaatttct ttattgactt
    23401 cttgaattgt tttttgtagc caagtttcaa tttcttctgc ggtcaaaagt gcggtcgttt
    23461 ctttccatgc atcgcttagt agacgcacag ccatttcgct tgccacgtct cctgcccggt
    23521 gaccacccat gccgtctgca acaatgacaa tcggctggtt atctttattt tcaaaaaccc
    23581 cgccgttgtc ttcattatga tgtcttattc tgcctctatc tgttctaaat tctgcatgca
    23641 ttttaaaagc acctcactat ttttcaggac tttacttttc taaggctaga aacgaagaaa
    23701 ccatcgcttc caatatctgt tggtaaaagt tgaataaaat cgtccttctt gatttgcgcc
    23761 aatttttcag ggagtactac aggttctagt gtgaattctg gatgtttttc taagaaagcg
    23821 cgaagaaccg tttcattttc ttccttgtca atggtacaag tactataaac taatatacca
    23881 ttttctttta ctaattggct aacatcatct aaaatcgcta attgaatttc tgctaatttg
    23941 tggatatctt tttctgtttt cgcatatttg atgtctggtt ttctgcgaag aacgccaaag
    24001 ccggagcacg gagcatccac taaaatacgg tcaaatgttt ctggttcaaa catggtactt
    24061 gcggttcttg cgtctaaatg cgccgtacga atattaagta gttgcaatcg tttggcggct
    24121 tgatcaatta gcttggtttt cttttcgtgg atatcgagtg catgaaccat tcccgtgccg
    24181 tgcatttttt ccgcgatatg ggttgttttc ccgcctggtg ccgcacaagc atctaatacc
    24241 gtcaaattgt cttctagttg aagcgcatag gctgcgagca ttgagctttc gtcttgaatg
    24301 ctacatttac cgtctttgta tgcttttgtt tctgctacag atcctttttc aacaagtaac
    24361 gcttcctcga taaattcatt acgtgtcacg gtgattcctt ggtcatttag ttctttgatt
    24421 aattgttcag taggaatttc tgtttggttg acgcggatac tttggtgtgg cgcgacaagg
    24481 aatgctaaac cgatttcacg cagtttttcg ataccatatt gatctgccca cctttttgct
    24541 aaccattctg gcagacttgt ttcaacagcg attttttgca cagggtcttt gatggcatca
    24601 atacttggta cgccttttcg aataacatta cgcaatacgc cgttgacgaa cttagttaca
    24661 ccttggtgtc ctaaatcttt cgcgatgtca ccagcttcat ttaaaatcgc gtgctcagga
    24721 actttatcta aaaaggttaa ttgataaacg gacattctta gtaagttttt cacccaattg
    24781 tcgggttctt tattgagaaa cggtgctaaa tagtaatcaa gtgtaatttt gcgctgtgtt
    24841 gtaccatata ctaattcagt caaaagccct ttatcaagcg gatttaactt ttgttttttt
    24901 aatgcgtcat taattaataa gtggctgtat gattgattat tttcgatttt aatgatgagt
    24961 tctaatgcaa tcgcacgaac tgttttttgt tttttcattt attcaccaaa ccttgtcgac
    25021 ttgcttaaat ttctgccagc tccggtcatg aatgagtgaa catccatctt cggttttcct
    25081 gctggttgga ttactgttgg tacgatgagc gtgccgtcgc ctgctacgat tttaagcgtt
    25141 gttttatctg ctaaaatggc acccggttcg ccgtcctctt ttgtttcttc atatgtttct
    25201 tcataagttg cttcccagat tttaaatggt ttttcttcca gtgttgtata agccactggc
    25261 caaggagaca atcctcgaat ttgattaaag atagtacgtc ctggttttgt ccagtcgatt
    25321 ttttcttgtt ctctagaaat attacgtgca aaggttacct tttcagggtc ttgtgggatt
    25381 gccgttattt ttccagctaa aaagtcgggt aatgtgtcca ttaataattc tgcgcctaat
    25441 ttgcttaatt tatcaaacat ggtgccagta ttatcttcat ctgtgatggg aattttacgc
    25501 tggctaatca tatccccagc atccaatttc tctaccatat acataatcgt aacgcctgtc
    25561 tccgttttcc cgtcaagcag tgcgtagtgt acaggagcac ctccgcgata ctctggtaaa
    25621 agagatgcat gcacattaat cgcaccatgc tttggtgatt caagcaaact atttggtaaa
    25681 atttgtccgt aagctgctgt tacaagtagg tcggcttcta gagcaattag ttcttctaat
    25741 tcgctagatg tccgtaattt ttctggttga taaactggaa tagctagttc taaagcagct
    25801 ttttttactg gcggtggtgt caaaactcgt ttgcgtccaa ctgggcgatc tggctgtgtc
    25861 acaactgcaa ctacatcata tgtgctggct aattgcgcta aaaccggaac agaaaattcc
    25921 ggtgttccca taaaaataat tttagtcatt ggtttgctcc ttttacatta gtacgtaagg
    25981 ctgtacgtca atagttattg ttaaaccttt ttgttggtct ttttgataat gggtaattag
    26041 tgtttttagt tcttttttta agtttggttc gattttatat ttaataatgc actggtagcg
    26101 atatttgttt ttaattctcg tgatggtgct aggaacaggg ccaagaatca cggcatctgg
    26161 accgagcttt cctcgtaaaa actgagccat ttcttgaatg gttcgaatcg ctttcatttc
    26221 attttcatcg ctgacattaa tcatggttaa gtaataaaat ggcgggtagg aacccatttt
    26281 tcgtagctgc atttcgtggt tataaaaacc gatgaaatca tgttttttgg cgaattcaat
    26341 actgtaatgt tctgggttat agctttgaac gatgacttct cctgtccgct catgtcgacc
    26401 tgctcgtcca cttacttgag tgagaagttg gaaagttcgt tccgaagcgc gaaagtctgg
    26461 taaatgaagc attgtgtcag catttaatac gccaactaac gtaatatctg gaaaatctag
    26521 tcctttggca atcatttgtg ttccaagtaa aatatcggct tcgtgattgc ggaagctttt
    26581 gagtaatttt tcatgagcac cttttgttct agtggtatcc acgtccatcc ggatgacgcg
    26641 cgcttctgga attaatttgg tcaaactttc ttctactttt tgtgtaccgg tgccaaaata
    26701 acgaatatgc tcgccctcac agctcggaca tttttgcgga acacgttctt catgtccgca
    26761 gtaatggcat ttcatttgat tgctcgattg atgataggtg agcgaaatat cgcagttcgg
    26821 acattccaca acataaccac aatcacggca catcacaaaa gaagaataac ctcggcgatt
    26881 tagcattaaa actgtttgtt cttttttggc aattcgctct ttgatttttt ctagtaattc
    26941 agtcgaaaat tcggtgcggt tttctttgcg taattcttcg cgcatgtcga caacgctcac
    27001 ttctggcatc gcccgatcat tgacccggct aggaagttcg attaacgtat acacaccttt
    27061 tttcgctcta gcaaaagatt caagggacgg cgtggcgctt ccgagaacta ctggacattg
    27121 atattttgtt gcgcgccaaa tggctacatc tcttgcatga taacgcggat tatcttcttg
    27181 tttgtaactc gcttcgtgct cttcgtcgat aataataatg ccgagatttt caaacggtgc
    27241 aaatacggcg gaacgagccc caacgacaac gcgcgcttct ttgcgttcga ttttgcgcca
    27301 ttcgtcgtat ttttctccgg aagatagcgc actatgtagt accgcgacct cgcttccaaa
    27361 gcggctttta aatcgctcta ccatttgtgg ggtaagggaa atttctggta ctaaaacgat
    27421 ggcttcttta ccctctttta attttgcttc gatggtttgt aaatagattt cggttttccc
    27481 acttccagta accccgtgta ttaggaatgt ttcttgatca gttgctgcgg tgattttctc
    27541 gcacgcagtt tgttgatctg gtaataactg aagcgattca cttttttcaa attggtggtt
    27601 ttcataggga tcacgcgaaa caattttttc ttgaatagaa agtatcccta agtcgactaa
    27661 tttttttatt gtggcatccg ttgtttccgc ctgttttttt aactcggctg ccgtaatttc
    27721 gttgccttca aaagcttgga aaaatgcgag tacacgtgac tgtgctttgg cgtttttcgg
    27781 catatcttct attatttcag ctagttggtg tggtgatttg agacagttaa caacgcgaat
    27841 ttttttactc gtgattttat ttttgacttg gtagactact tccacactac cttctctgac
    27901 ccatttgcca atttgtttga gcaaaccgcg ggcttctgcc actttccagt ctagtgtttc
    27961 gtagccttca aatagctgct ctaattcttc gttttcctca tctaagcgca aaaaatattt
    28021 ttcgtatttt gctcgtagcg cggctggtaa catggcttgg taagcagaca cccggaaact
    28081 cagcgtatct tctgctaacc aatcgcctag ttccatcaat tcttcattta aaacgggggc
    28141 taaatccatc accccgtcaa tgccttttaa ttttgggttt tcttctgttt ctccaagagc
    28201 aatgacaaat ccttgtattt tacgatttcc aaatgggaca cttactcgca tacctggacg
    28261 aataagttct tctaaatctt ctggaatata gtagtcaaat ggacgatcca cttgcatggc
    28321 tggaacgtcc acaattactt tcgcaatatt aatcattcgt tcacttcctt aaaaagttag
    28381 cagtttcttt gatgatatgt tcagcaactt cttttttatc tagtatcggt aacgctttgc
    28441 tagaaccatc tttccggtaa aatgtcacga tatttgtatc accagaaaag cctgctcctg
    28501 ccacactaat attgttagcg acaatcatat cggcattttt ggatgttaat tttttacgtg
    28561 cgtttgcttc tagattttct gtttcagcgg caaagccaat cacgacttgg tctgcagttt
    28621 tgtgttgacc aatttcgagt aaaatatctt tggttcgttt catttcaatg gcaaaatcgc
    28681 ccggctgttt tttaattttt tggtctgata cttttgctgg cgtgtaatcg gcaactgctg
    28741 cggtcatcac gaagatatct tgtgacactt tatgttcatc cacagcttga tacatttctt
    28801 ctgccgattc gacatagatt gcttctacac caggtggtac gggaagtgct ttgcttgtcg
    28861 taacgagcgt cacttttgca ccatgacgag ctgcggattc tgcaatacta aagcccattt
    28921 tgcccgtgga atggttggtg aaatagcgta caggatctaa tttttcgcga gttgcgccgg
    28981 ctgtaactag cacgtttttg tcgcgcaata aatctttatc ttcttgaaaa aattcagcaa
    29041 tacgaagaac gattttttct ggttcttcaa gacgaccgcg accaacgtag ccacaagcta
    29101 agtaaccttc ttctggctcg ataaaacgaa caccgtctgc gtataatcga ttaatattcc
    29161 gaataactgc tgggtgctga atcatgtgga cattcattgc tggcgctacc caaactggtg
    29221 cctctgttgc aagaatggtt gtcgttacca tatcatcagc gattccattt gccattttgc
    29281 caatcacatt cgcggtagct ggtgcgacaa ttactaaatc ggcccaatca gctaaatcga
    29341 tatgtgcgac aacacttgat tttttttcgt caaatgtatc tgtgtataca tcatttttag
    29401 ataatacttg aaacgaaagc ggtggaacaa attcctgagc atgttctgtc atcatcactt
    29461 tgacgtttgc tcctgcttgc gttaatttac ttgtaagtgc gactgcttta taaacagcaa
    29521 tgccaccgga cactgcgagt aagatatttt ttccttgcat tgaaaagtca cctcattttt
    29581 aatataaaaa atcattaatt ctattatacc ttaaattaag acaggacaaa accatgaaga
    29641 aactagattt cagcttattt ttattgcact tgtggctaac aaaaaagccc cgcaggaaag
    29701 cggagcagtt aagcttattt atcgtcgttt tgtaaaacta attttccagc gtgaatttct
    29761 tctaacgctt tcccaacaaa tttgtcggac tggtagctcg gcaatacgcc tttatcattt
    29821 tccagttgca tgtagcgtgc gcgtttagcg gccactgtaa ctagcgaata ttttgagtcg
    29881 atttttaaca ataaattatc aattgatgga tataacatca ttgtaatccc tccaacattt
    29941 ttttgtagcg atgaattact cgctcagttt ttaagtgttc tgtttcgacg atgcctttga
    30001 ttttttgtac ggcgtttgca actacatcat tcaccacagc ataatcataa gacgccatca
    30061 tttcgatttc tttcttcgct gtttccatgc gttcctcgac aacttccatc gattctgtac
    30121 cgcgaccgat aatccggttt ttaagctcag acaaatctgg tggcgttaag aaaatgaaaa
    30181 ttccttctgg catcgctttt cgaacttgca ttgctccttg tacttcaatt tcgagaaaaa
    30241 tatccactcc tgcggctaat ttttcctcga catattcaag cggagtgccg taataattac
    30301 cgacgtactc tgcatattct aacatctttc cgtctttgat agcttgttca aacacttctc
    30361 gtgaacgaaa ataataatcg accccgtctt gttcgccttc acgaggaaga cgcgttgtca
    30421 tggaaataga ataatcaaaa cttgtttccg gatctttaaa aacagcttcc cgaacagttc
    30481 ccttacctac tccagatgga cctgaaagta caattaacag tcctctttct gtcatcattt
    30541 cccctcctgc atatcattcc acattttgca cttgttctcg aattttttca agcgtcgttt
    30601 tcatttctac cacttgttca gtgattttta gagaacttgc tttggagcca atcgtgttga
    30661 cttcgcggtt catctcttga atcagaaaat ccagcttccg cccaattggt tcttcgagta
    30721 aaataatacc ataaaattgc tttaaatgac tctttgttcg ttcgacttct tcgttaatat
    30781 ctgccttttc aagtagcatt gcgacttcgg taagaacgat acttggatca aattggtcgc
    30841 ctacaacgtt ttgtaaacgt gtttcaattt tttcttggta atgtttttct gtatttggaa
    30901 tttcagcttg aatgatctcc aaacttttct ccaatgcggt aagatgttgt ttgaaataaa
    30961 gcagtaattc tgctccttcc atacttctca tctcatccag tcgctcagtt gcgcgggcaa
    31021 gtgtttctaa aactaatcgc tctagttcgc tacttgcttc cacttcttcc tcaatagaaa
    31081 gataggcttg ttcttgcagt aaatcagcca tagttggtaa ttcttgtaat tcatatctag
    31141 cgcttgcttg tttaataaaa cggtaatagc tatctgcgag gtcccagtca atatgtagtt
    31201 cgcgttttgt gatttgctct cccgtgatgg aaaagaaaac ttcgattcta ccacgtttga
    31261 tttgcttact tatgattttt tttaattttc cttctaaata agcaagttgt tttggcatcc
    31321 gaaaaagaaa ttcggagtag cggtggttga ctgcttttaa ttcaatggtt actttgaacg
    31381 cttcaaattc tttcgtcgca cgcccaaatc ccgtcatgct tttcaccatt tggcaagaca
    31441 cctttcataa cttaaagttc cctctaagat tacttgaaat ttgttctgac ttcttattat
    31501 accaaagcta ctccttgcat acaatacatt ttcggaatgt atgttaaaat agaaagtaac
    31561 taactcacaa aggaatgaat aactaatggc gtttgatgca atgtttttaa aagcgatgac
    31621 cgaagaactt gccgaacacg gagaaagtgg acgtattatg aaaatccatc aaccgttctc
    31681 gcatgaactt gttttatata ttcgaaaaaa ccgtgaaaat aaacgtttac tgatctcctc
    31741 gcatccaagc tatgcgcgga ttcagtggac cgatgatatt cccgaaaacc cagcaacccc
    31801 accgatgttt tgtatgttac tgcgaaaata cttagaaggc gcgattattg aatcgattac
    31861 gcaacttcct aatgaacgaa ttttacaatt tagtattcgc ggtaaagatg atatcggtga
    31921 aaatcgtttt tgtgatttat ttgtagaaat tatgggacgg catagtaata tcactcttgt
    31981 cgaccgtgcg aaaaatgtga ttgttgattg tattaaacac gtttcccctg cacaaaatag
    32041 ttaccgaaca ctgcttccgg gagcgactta tgttttacct cctgcaacgg ataaactcca
    32101 cccatttgag gttacttcgg agcagattct ggatagacta gatttctcag cgggtcgaat
    32161 ggataagcaa cttgtacaaa attttgcagg attcagccct ttgcttgctc gggaaatagt
    32221 atttcgtgct gggaacttaa cggcagattc gctagttgcc gcctttttcg aagtaattgg
    32281 gctagtgaac gagcatttag gccatgcagc cgtgccaaac gaatggcgca tccaaaataa
    32341 agaggattac tattttttcc cgctccgcca tgtcgatgca gaaacaaccg aattcgcgaa
    32401 tttaagcacc ctattagacc atttttatat tggtaaagcg cgtcgtgatc gtgtccatca
    32461 atttgcacat gatttagaaa aactcttatc caacgaactg gctcgaagca ggctgaaaat
    32521 cgaaaaactc gaaaacactt tgctcgaaac agaaaaagca gatgtttatc gtattcaagg
    32581 tgaacttcta actgccaatc tgcatttaat ggaacgcggg atggaagaaa ttactgtaga
    32641 aaacttttac gatgatatga agaaaatgac gattgcactt gatactagaa aaacaccatc
    32701 cgccaatgcg caaagctact ttagccgcta ccaaaaacta cgtaacgcgg tcgaagtagt
    32761 gaaagagcaa atcgcgctca cgaaagaaga aattacttac ttagagtccg tggaatcaca
    32821 acttgaaaca tctggcccac aagacgtgga agaaatccgc caagaactag ctgaacaagg
    32881 ctatcttcgc tacaaacaga aaaaaggcag ccggaaaaaa gcgactttac ctgctccaga
    32941 aaaatatact tcttcgaccg gcttaacgat tttagtcgga aaaaataata aacaaaatga
    33001 ttatttaacg aataaattag ctaggaataa tgaatactgg ttccatgtaa aagatttgcc
    33061 tggttcgcat gtggtcattc aatcgaatga tccagatgag acatcgatta cagaagccgc
    33121 aatgattgca gcctattatt cgaaagcgcg cctttcagca accgtccccg ttgacggcac
    33181 gctcgtaaaa cacgtgaaga aaccaaatgg tgccaaacct ggttatgtca tttatgataa
    33241 ccaaacgact tacttcgtta cacctgatga aaagcttgtt ttagagttaa aaaattaacg
    33301 gttccttcct ggagccgttt tttctttcta attttagggt agatgtgtac tgactttact
    33361 tttttattgg aaggatgata gaggaatgaa aattttatta attggtgctt ctggtacgct
    33421 tggctctgcg gtgaaagaac gtttggagaa aaaggccgaa gtgattactg ctggtagaca
    33481 tagtggtgat gtgacggtgg atattacgag tgtcgatagc atcaaaaaaa tgtacgaaca
    33541 ggttggaaaa gtagacgcaa ttgtttcagc cacaggaagc gccacttttt ctcctttaac
    33601 agaattaaca cctgagaaaa atgcagtgac gattagtagt aaattaggtg gtcaaattaa
    33661 tctagttttg ctgggcatta actcattgaa tgataatgga agcttcaccc ttactactgg
    33721 cattatgatg gaagatccaa tcgtccaagg ggcttctgct gcgatggcaa atggcgcggt
    33781 tacagctttt gcaaaatctg ctgcgattga aatgccacgt ggaatccgga ttaatacagt
    33841 gagcccgaat atattagaag aatcttggga caaactagaa tcatttttcc aaggtttcgt
    33901 tccagttcca gccgcaaaag tcgctcgtgc gtttgaaaaa agcgtctttg gtgcacaaac
    33961 tggtgaaagt tataaagtat attaatagaa aaagaagctc accgtaacaa aggtgagctt
    34021 ctttttattt tccccagttt tctggatttt tcttccattc ttttaatgtt tccatatctt
    34081 caccagtcac gtaattttca tttaaagcta cttcaattag ctcatcatag ttcgttaatg
    34141 ttactagttt tgtgccagat tcttctagca gttgttttcc tttagcaagt ccatatgtaa
    34201 atatggccgc gattccaact acttccgctc cagcttcttc cagcgcttcc actgctttta
    34261 atgaacttcc accagttgaa atcaaatctt caatgaccac tactttttga cctttagaaa
    34321 ttggtccttc gatttgattc cctttgccgt gttctttagc ttttgatcgg acgtagacca
    34381 ttggtaaatc tagtaaatca ctcacccatg cagcatgtgg aataccagca gttgcggtgc
    34441 ctgcaacaac atctacttca ccaaaggttt gcttgatttt ttcggctaat gacttggcga
    34501 taaactgacg gacttttgga aagcctagcg ttaggcgatt gtcgcaatat ataggggatt
    34561 taattccaga tgcccaagtg aaaggctcat ttggttttaa aaatacagct ttaatttcta
    34621 ataattgttc agctacttgt ttttcgatgc tcatgcattc cactccttta aaacttgatt
    34681 atacgcttct accgggtcgt ttgcgcgcgt gatggaacga ccaacgacaa tgtttgacga
    34741 accaatcaaa cgcgcttttt ctggtgttac gacacgaatt tgatcgtcgg ctgcgtcgct
    34801 tgctaatcgg atgcctggtg ttacacgtaa aaaatcagcg ccattttgtt gtttaatatc
    34861 ttctgcttct agcgcggagc aaacgacgcc gtctaaacca gcttgtttcg ataaattgct
    34921 ataatgcatg acggattcaa gtagacttgt ttttattaat tgttctgttt gcatgtctgt
    34981 ctcacttgta cttgtcagtt gagttacggc aataattttt ggacgtttgc cacttgaaga
    35041 acctatttcc agaccttccc tggcagcttc catcattttc ttcccaccag ccgcatgtac
    35101 attaaccata tctacgccta gttttgccaa gccaatcatc gcacttttga cagtgtttgg
    35161 gatgtcatgc agttttaaat ccaagaagat ttcatgatgt tgttgcttta ttttttcaac
    35221 aatgattgga ccgttgctat aaaaaagttc catgccgact ttcacggata gcgtttctcc
    35281 cgaaaatttg gctaaaaagg tctctacttc ttcgtaagtc tggaaatcta gcgcgataat
    35341 tggtttattc attgatttgc tcgctccttt ttaagttctt gtagggaaga aataccgagt
    35401 tcatccattc gttttggtag ttcgctaatt aatttcggac aaataaatgg gtcggtaaaa
    35461 ttcatcgtgc ctactgcgac tgcatctgct ccggcaatca agaattctaa tacgtcatct
    35521 acagtttgca cgccgcccat gccaatgata gggatattgc ttacctcgcg gacttggtga
    35581 atcatccgaa tagccaccgg tttaatcgct gggccagaaa gtccacctgt tccatttgcg
    35641 atgattggtt ttcttgtttt taaatcaata cgcatgccga gtaaggtatt tatcattgtg
    35701 agtccgtccg caccagcggc ttcaattgct tgcgcgatgg aaacaatatc cgctacattc
    35761 ggtgataatt tcacgtaaac tggcacagtt gcgacatttt tcacggcttt cgttaaacga
    35821 tgcgcaacat ccggatctgt tccaaatgcg atacccccat gtttcacatt gggacaggaa
    35881 atattaagtt cgatggcttt cactgctttc gattccccaa ttctggcgca gacttggaca
    35941 taatcatcct ccgtcgcacc cgccacatta gcgataatcg gtgtttcaaa ttgttctaaa
    36001 aatggcagtt cgtgcgccaa aacatgctct agacctggat tttgtaagcc gattgcattc
    36061 agcatcccgc tcgcggtttc tgctactcgc ggagtgggat tcccaagtct aggttctggc
    36121 gtcacggctt tggccataat cgcaccaagt tcatttaaat catagtattt gctatattct
    36181 tgtccgaagc caaaacatcc tgatgctggc ataatcgggt ttttgagcga taatccagga
    36241 atttctactg ctaatcggtt cataaactca cctcatccgc acgaaatact gggccgtctt
    36301 cgcacacttt aaattgtttt ttcgcatcat ctgcttttgg acaaacacaa gcgtagcaag
    36361 ccccaatacc gcatgccatt cgttcttcta aagaaagata tgttttcgtt tccggaaaac
    36421 tagctttcac ggcctggagc atcgcttttg gtccgcaact atagatgaca tctggttctt
    36481 ctggaaaatt gttcgtgatg tctgtgacga aaccttgtgt tccaagtgag ccgtccaccg
    36541 tcgcaatatg aactgtgcca tatgcattca tttctttttc ataaaaacta tctttcgcag
    36601 attggaatcc atttacaaac gtgacttgta cgccttttcc agctaactct ttaccgagtt
    36661 gatacatagg agggacacca attccacccc cgattaaaag agcggttttt ggtgcaggtg
    36721 tctggtcgat atcgaatcct tttccaagcg gacctaacac atcgatagta tccccttctg
    36781 aaagtttact gaaatctctt gtcccgtcac cttctatccg gtacaacaga atgcatgtct
    36841 ttgcggtttt atcgtaagaa caaatactta tcggtcgtct cataagtaaa tcagaacgac
    36901 tcggtttcag cattaaaaac tgtcccggtg acatatcggc tacacgttcc cctgtcaaaa
    36961 ttaattcgta tactttatct gcaatttcgg tttgctgaat gaccttcatt tccgtctgta
    37021 acacggttcc accccgtttc ttctatttaa acacgtgctt taggttgttt tacttcactg
    37081 gtattcatcg attcgagttc aaaagagcgc gattccagta cacgcaagat tgcttccgct
    37141 gtatcgagcg aggtacagac cggaatacca ttttctacag attcgcggcg aatttggaag
    37201 ccatcacgct caggtcgttt accagtcgtt aatgtgttca ctacgagcgt tacttggcca
    37261 tttcgaatat aatcgatcaa cgtttcttga ttttctccaa tttttttcac ttgtgacact
    37321 ggaatgtctg cttcttctaa cgtgcttgct gttccttttg ttgccataat agtaaagcct
    37381 atgcgattaa atcgtttcgc tagttctacc gcttcttctt tatcgcggtc cgctacagtt
    37441 aaaagtactg tcccgtagtc atgcatcgtt gtcccactcg ccacaaaacc tttgtagagt
    37501 gctttttcga gcgtcacatc tttccccata acttctccgg tcgatttcat ttcaggtcca
    37561 agcgacgtat ccacactacg caatttcgcg aaagagaaca ccggcacttt gacaaaaatt
    37621 tcttgttttt ctggggcaag tcctggcgtg taaccaaggt cgattaagtt ctcccctaag
    37681 ataactcttg tcgccacatt cgccatcgga atttcggtaa ttttacttaa aaatggcgcc
    37741 gtccggcttg agcgcggatt tacttcaata acgaaaactt cttcgccatc tacgacatat
    37801 tggatattca gcattccgat aatgtttaag ccagttgcca gccttgtcgt ataatcgaca
    37861 atcgtatttt tcacttgact gcttaaacgt tgcgctggat atacggcaat cgagtcacct
    37921 gaatgaactc ccgcacgttc gatatgttcc atgataccag ggattaagac gttttcaccg
    37981 tcactgattg catctacttc tacttcttgg ccgcttacgt aacggtctac taaaactggg
    38041 tgttttggat ttacttttac cgcattcgtc atataatgtt ttaatgcttc ttctgattct
    38101 acgatttcca tcgctcgacc accaagtaca taagatgggc gtacaaggac cggatagccg
    38161 atgtctgtcg ctacgttgat tgcttcttct accgatgtgg ccgttttccc agctggttgt
    38221 ggaatttgta gaatttctaa tgctttttca aaggcatcac ggttttctgc gcggtccgta
    38281 tcttctaaac ttgtacctaa aatttttacg ccgcgttttg ctaaaccgtc tgctaaatta
    38341 atcgctgttt gtccaccgaa ttgcacgaca acccctagtg gctgttcgat ctcaataacg
    38401 tgcataacat cctctagcgt caaaggctca aagtaaagtt tgtccgagat actaaagtcg
    38461 gtcgaaacgg tttctgggtt attattaatg ataattgctt catagcctgc ttgttgaatg
    38521 gcccacacgg agtgcaccgt tgcatagtcg aattctaccc cttgcccaat ccgaatcgga
    38581 ccagaaccaa ggacaatcac gctttctttc gctgatcgtg ttgactcatt ttcctcttca
    38641 tatgtgctgt aaaaataagg ggttgtcgat tcaaattccg ctgcacacgt atcaaccatc
    38701 ttgtatactg ggaaaagatt ttgtgctttt cttaagtcat aaatcgcttg ttcatcgaca
    38761 ttccaacaag tggcaaggaa agcgtcagaa aaaccggccc gtttcgcttc tgccaaaatt
    38821 tcttggtttt gcggattttc tttgatacga ttttccagtt cgattgtttt acttaattta
    38881 tataagaaga ataaatctat ctttgttttc gcgtggagtt gttcgattgt ttgacctcgg
    38941 cgcaaagctg ctgctaggaa gaataaacga tcatcttctg ggaagcaaat tttgcgttct
    39001 aatgttgctt cgtcagcatt ttccgcttct tcaagcaaca aatggtcagc gccaatttct
    39061 agggagcgca ctgcttttag aagtgcttct tcccatgaac ggccaattgc catgacttca
    39121 ccagttgctt tcatttgtgt tccaaggcga cgatccgctt gctcaaattt gtcaaaagca
    39181 aagcgtggga ttttcgcaac aacataatct agtgttggtt cgaaatgggc aaaagttgtt
    39241 cctgttactg gatttctcac ttcatccagt gttaagccaa ctgcgatttt agctgcaagt
    39301 ttggcaattg ggtagccggt cgctttggaa gctagcgcag aggaacggct cacacgtggg
    39361 tttacttcga taacatagta attataacta tctggatcaa gtgccagctg aacgttacag
    39421 ccgccttcaa tttctagtgc acggataatt ttcaacgaca catcgcgcaa caattggtat
    39481 tcgcggtcgg aaagcgtttg gcttggtgcg acaacaatcg aatctcctgt atgtatgccg
    39541 actgggtcaa tattttccat gttacaaaca accattgcgt tattgttcgc atcacgcatt
    39601 acttcatatt ccacttcttt aaaaccagcg atactttttt ctagtaaaca ttgtgttact
    39661 ggactcagtt ttagaccact tgtcaccgtt tcaattaatt cttgttcatt gtggcaaatc
    39721 ccgccgccag aaccaccaag cgtatatgcc gggcgcacga taactgggta gccgatacgt
    39781 tcaacaaaag tatacgcttc gtccaaatta tgaataatgt cactttctgg cactggttcc
    39841 cctagttcat tcatcaagtc ccggaaagct tcacggtctt ccgctttttt aatcgccgtt
    39901 aaatctgttc ctaacacttc tacgttacat tcatccaaaa tcccagcagc tgaaagttcc
    39961 atcgccatgt tcaatcccgt ttgtccccca agcgttggca aaatggcgtc cggacgttct
    40021 ttacgaataa tgcgcgatac aaaatcaagc gtaattggtt caatgtaaac tttgtccgcc
    40081 atttctgcat ccgtcataat tgtcgctgga tttgagttca ctaaaactac ccggtaccct
    40141 tcttctttca aactcaggca tgcttgtgtc ccagcataat cgaactctgc tgcttgtcca
    40201 ataacaattg ggccagaacc gattactaga attgttttta tatcgtcacg tttaggcatg
    40261 tagttcaccc tcctctttcc cattcatcat ttccataaat tcatcaaata agtagttgac
    40321 gtcacttggt cctgggtttg cttctgggtg atattgtact gtataggctg gatattcttt
    40381 atgtgccagc ccttctaccg tttcatcatt taattcaatg tgtgttactt ttaaatctgt
    40441 tccaataagt gaatcttttt ctactgcgta accgtggttt tgtgcagtga aatcaacacg
    40501 tccagtggct agttctttca ccggatgatt cgcgccacga tgcccgaatt tcagtttaaa
    40561 tgtatctgct ccgttcgcaa gtgcaaacag ttggtgccct aagcaaattc cgaatagtgg
    40621 gagcttgcct tgaatgccgc gtatcatttc taatgcttct ggcacatctt tcggatcccc
    40681 aggtccattg gataacatca cgccatccgg atgcattgca agaatttctt cggctgttgt
    40741 gttgtaagga acaaccgtca cgtaacagtt acgtttattc agttcccgta aaattgaact
    40801 tttcacacca taatcaacaa gcaccactcg tttaccatct cctgggcttg caaatgcttt
    40861 agcagaggaa acttcatgta cttgatcgac tggcaaacgt acagagcgca agtggtgtag
    40921 caattcctct ttgtttgcag tttctgctgc taaaatgcct tttaacgttc cttctttacg
    40981 aattagtttc gttagtttac gcgtatcaat tcccgcgatt cccgggatgc ctttttcttt
    41041 caaaaaatca tctaaagtaa tttgattgcg ccagttggaa gggaattctg cagcttcacg
    41101 aaccacaacc cctttcacag caggattgat agattcaaaa tcgtcgcggt tcacaccgta
    41161 atttccaaca agtggatacg taaaagtaat aatttgacca tagtacgaag ggtcagtgat
    41221 tgtttcttgg tagccagtca ttccagtatt gaagacaact tcaccaatgg tttctttttc
    41281 actaccaatc gcatcaccga taaaataatt gccatcttct agcattaaaa ttcgctttgt
    41341 catttaattt ccccctcatt gtatacaagt gtgccttccg aaaacgttgc tactggccat
    41401 ccaatacacg tttctcctac aaatggtgtg ttttttcctt ttgaataaaa agtagctggg
    41461 tcaatattcg cttctttttc taaatcaagt acgacgatat ctgctacgct gccttcttct
    41521 aatttcccgt atgggagttt aaagcattcc gctggtttta cagtcatcca gtcgattagc
    41581 tgttttaatg tccattcgtt cgttttaaca aaatgggtat atagtaatgg gaatgccgtt
    41641 tctagaccta caattccgaa agcagcttgc tccatcggta catttttttc ttccgctgcg
    41701 tgtggagcat gatcagttgc gataaaatct atcgtaccat ccagtaagcc ttctaaaagt
    41761 gccgcccgat cttctttgct acgaagtggg gggttcattt tccaattacc gtcatttcct
    41821 ggaatagctt cttcatctaa aattaagtga tgtggtgaaa cttcagcagt gacacgaatt
    41881 cccgcccgtt ttgcatctcg cacaacacga acagattctt ttgttgaaat atgacagaca
    41941 tgataatgac aacctgcagc ttctgctagt aaaacgtcac gtgcgatttg gacagattca
    42001 gcaatattcg gaataccttt cagaccttct ttttcagcaa aaatcccgtc atggacaacg
    42061 ccaccataga taagtgagtt atcttcacag tgagccacaa tcgccatatc tagtgctgct
    42121 gctcgtttca tcgcttcata cattgttcca gctaactgca cgcctacccc gtcatctgta
    42181 aaagcaaatg caccagcttc ttttaaagct tcaaaatcaa ctaattcgtc cgttccaagg
    42241 cttgttgtaa tcgaagcata tggtaacacg cgaactttcg ctgtttcttt aatttttgct
    42301 tgtaaacttt ccattacttc tttggaatct ggaacaggtt ttgtattcgg catcgaacaa
    42361 attgtcgtat agccaccgcg tgccgccgct tgtgttcctg ttaaaatggt ttctttatgt
    42421 tccccgcccg gctcacgaag atgtacatgg acgtcgataa aacctggggc aattaatttc
    42481 cctgtcgcat caaattcctc gccgcttgtt acttcaatgg aatccgcaat caaattgact
    42541 ttaccgtttt gaataagtac atctttgttt tccagttcac ctgacgcgtt taatacttgc
    42601 ccatttttta atacgtacat aatttcgccc tcatttcctg ttcttttaaa atagcttcca
    42661 aaatggccat tcttataaaa acgccattcg tcatttgcgt aacaatgcgt gatttttcgc
    42721 tttctactaa actatcagca atttccacat ctcggttcac agggcttggg tgcataatga
    42781 ttgcatcttc ttttaactgc tttgcccgat tttccgtcaa tccaaatttt tcgtggtagc
    42841 tttctttcgt aaactcatct gttccactat ggcgctcatg ttgtacacgc aaaagcatca
    42901 acacatccac tttttccaca atttcatcaa ccgataagta agtgccatat gctaagtaac
    42961 tttcgtcgaa ccattctctc ggtccggaga aaaacagttc cgcaccaagt ctttttaaca
    43021 ctttcatatt ggaattggca actcgactgt gacgaatatc accagcaatc gctactttca
    43081 aaccctgaaa agtaccaaat tgttctttta ttgtaaataa gtcaagtagt gattgactcg
    43141 gatgttcacc gcatccatca ccgccgttca caatagcaat gtctaatttt tcgagtcccg
    43201 catagtaatt ttcttctgag tgtctaatca ctgcgacatt gaccccgacg gcttgcattg
    43261 tgagcagtgt atcgtagagc gtttctcctt ttgtcatgct agagctcgct gcatcaaaag
    43321 aaacaacctc cacacctaac tttttctctg ctacttcaaa actcgtatgt gttctcgtac
    43381 ttggttcaaa aaacatattg accgcgaaag tctgttcatt aaaagtcgct tttttcccgc
    43441 gtttaaactg tgccgcctgc tctaataaat gctcgatttc atggacggtt aatgcttcca
    43501 ttgacaacaa atttttcatt taaagcgcca ccttttctac ttcattttat agaaaaacct
    43561 ctgtaaattt tttgtctgca gaggtttttt tgtcatgtgt tatgctgatc tgtgctcggc
    43621 tggtaatact aagtttaaga taatcccaat aactgccgcg agcgccatac cagatagctc
    43681 gaacgttcca gctttaatga ataagccgcc aattccgact actagtacaa ccgaagcaat
    43741 aatcatatta cgattaacac ttaaatcaat tttattttca atcatcattc gaagtccact
    43801 cgttgcaata accccaaaga gtaacaggga aatgccgcct agaactgctg taggaaccga
    43861 ggtgataact gcattgatgt aaccgataaa tccgaagagg attgcgaaaa ctgccgctcc
    43921 tccgataaca aacacgctat atacttttgt aattgcaaga acgccaatgt tttcaccgta
    43981 agtcgttaca ggtggtccgc cgatgaacga tgcgataatc gaagccgtac catctgcaag
    44041 taaggaacga tgaagtcctg ggtctttaaa gaagttttta ttcgtaattc gattaagtag
    44101 taattgatgc cccatatgtt ccgccattgt gacaaacgca agtggcgcca tacttagaat
    44161 gaccgtcacg gtaattactg ggtcgatatt tacaaatgga atgctgaaat ctggaatttg
    44221 gaagaaagag gcatttttga ttaacgtgta atctaccatc ccaaaagcca tacttgttaa
    44281 gtaaccgact gtgaagccga acaaaattgg aatcaagccc ataaatcctt tgaaaaacat
    44341 cattgcgatt atggttgcaa ggagcgtaat tactgctact gccaaagttt ctaaactgta
    44401 tttaccattg tttgttccca tcgccatcgc tgctgcactt ggagcaagcg acaaaccgat
    44461 aaccatgatt actggcccaa caacaattgg tggtaaaacc ttttgaatcc agtcaacacc
    44521 agcgtagtaa acaattagag aaacaatcgc atatactaca ccgacggaga acgttccgac
    44581 cataactgcg cccggacctc cgccagattt ggctgcaagt agtgcagtaa ttggtgcaat
    44641 aaaggtaaag gaagaaccta gatatgcggg gattttcccg cgagtaattc ctagataagc
    44701 aagtgtcccg agtccgctag atacaagcgc cactcccgga cttaaccctg tcacacttgg
    44761 cacaaagata gtagagccaa acatggtgaa aaggtgctgg atgctaagaa taatccattt
    44821 attgaagctt ggtctttcgt gtatatctag tactggtttt gtcactgttt ctgtcgtttc
    44881 tgtcattttc ttccctcttt cttcataaaa aatacccctt gtctgtgtcg acaaagagta
    44941 tagaataatc ccctatagaa attaatcact ctttgtcagc ctcacaggac tgcttttaaa
    45001 aaagtgttac attgttattc atttttgtta ataataaccg catcttcttc gttgtccaca
    45061 tcggttaggc gaacttctac tcgttcgttt cctgatgtcg gaatgttttt ccctacataa
    45121 tctgctctaa tcggtagctc tctatggccc cgatcagcaa gcactgcaag gtgaatttgc
    45181 gcaggtctac ctacatccat taatgcgtcc attgcggcac gcacagttcg acctgtataa
    45241 agcacatcat ctacaagaac gacttttttt ccattaatat cgaatggaat gttcgtccca
    45301 tgtacagcgg gttcgcgagt cttatcatct ttgaaagata aatcatctcg gtaaagtgta
    45361 atatcaatat ctccaactgg aacatcaata ccctcaattt caagtatacg cttatgcaaa
    45421 cgctctgcaa gatagatacc acgcgtctta ataccgacaa gcgctaaatt cttcgtgcct
    45481 ttattccgct cgatgatttc gtaacttact cgagtgagcg cacgtttgat tgccgcctcg
    45541 tccatgacaa ctacttgttt ttgcatccga aatctctcct tttgtgcaaa aaaataaccc
    45601 tctgccagtg taagcaaggg aacgcgtacg agtatacaat taacccgtca aattatcgtc
    45661 accttcttag cctctctgga ctatgttaaa ggactttatt tcattagact tatcttaact
    45721 gatagaactc tccttgtcaa tcaaaaaaaa gaaaaacatg ttatactatt aataataaaa
    45781 taaaggaggc caaacatatg gctatatcta aagcaaaaaa gaaacgtcaa aagctcatac
    45841 gcgaaggtca tttgaatcct gaaatcaagc gtagcccctt tgcactcatc gatttaagtt
    45901 ccaaacaaac aaaaacgaaa aaaggatatc tttatagtaa gaagcggaag aatcaccaag
    45961 aagatgattc tttttttgtg tattttttta agttttcaca ttttctacat attaacaact
    46021 tgaaatagtc tacttttacc agaaattagt ccaatttaac tgctctatgt gctatgctga
    46081 aatagctaaa aacatggact taagaggtga atacaatggg cataatgaat agcttattac
    46141 aacagaaaga aatggtcgtg aaagattggc taacgtatta tgtatctgtg gatgatccat
    46201 atatcttcac attaaaaaat gatcatcgtt taatggatga aacgggcttt gttttagaaa
    46261 atttgtttat tggaatgact gaagatttag gaaaaatgaa tgctttcgcg cgtgagcttg
    46321 gaaaagcaca gtttattact tcactcggaa tttctcgtat tttattccat attcgcttac
    46381 tggaagagtt tttgctcgat tatgcatcag aaatcaaaac aaaatctgct aattatcgtg
    46441 aattatattt atttagcatc aagcttcatc aggtatttag tagtttcacg caaaacttaa
    46501 tcgaaggcta tacccgtgca aatgaacaaa agattataca aaaagaaaac caaattatta
    46561 aagaatcaac caaactaatt tggattgccg aaaatgtttt tctgttacct ttaattggaa
    46621 gaattaccga tgagcgagca aaacaactta ctgaaacagc gcttgttgaa gtttgtgagc
    46681 aaccagtgaa ctatttaatt atcgacttat ctggcgtgca gttagagtct cctaacatcg
    46741 gcaagtacat tgagtatttc ttctcgtcgc ttaaattagt aggtgtaact ccgattatta
    46801 caggtatgca accgcaaact gccaaagtga tggttcaagt taatttaact gaacaacatg
    46861 gtattaaaac atttgcaacc ttacgccaag caacaaaaac acttatgaaa gaaaaagaag
    46921 caagaaacgc ccgtaaatag gtgttcttgc ttctttttta atattcttct tgacgtaatg
    46981 attttaaagc tttttcaaag gaactaggaa gtggcgcttc aaacatcatt cgttctttcg
    47041 ttgtcggatg atcaaaccct aattttgcgg catggagaaa ttggccattg cctttgattg
    47101 tatttttagg tccgtatttt ggatctcctg ctaaaggatg accaatatat ttcaaatgaa
    47161 ctcggatttg gtgcgtacgt ccagtgtcta atttgcaatt aattaatgtg taacctggta
    47221 aacgctctaa tacttcaaaa tgcgttctcg cttctttccc atcgcgtacg actgccattt
    47281 tttggcggtc ttcttttgca cgaccgattg gcgcttcaat tgttcctttt tggtggacaa
    47341 tgtcaccgtg gacaagtgcg atatattctc tatccgaagt tttgtctttt aattgtttgg
    47401 ctagtgattc atgggcatgg tcatttttag caaccattaa taagccagat gtatctttat
    47461 caattcggtg aacaattcct ggacggattt taccgttaat tcccgataaa tcatcacaat
    47521 ggaatagtaa agcattcacg agcgttccac ttgcatgtcc cgcagatgga tgaacgacca
    47581 ttccttcagg tttatttaca acaagcatat ctttatcttc aaaataaata tcgagtggaa
    47641 tatcttctgc taaaacttct agttcttctg gttcacgcac ttcgtaatga atttcatcgc
    47701 caacttgtac tttgtaattt ggcttcgcaa gttctccgtt aaccgtaata tcaccgtttt
    47761 tcagcatgag ttgtattgct gaacgacttt ttcccatcat ttcggcaatc actttatcca
    47821 cacgttcacg cgcatgactt tcttctataa tcaatgtttc attctgcatt atttaattcc
    47881 tttcgttttt cggtcgtcta caaaaacata cacgagcatt agtacgacac caactgaaag
    47941 cgcggcatct gccacattaa agattgggaa gtaataattt ccccatactg tttgtacaaa
    48001 atccactact tcttgatgca agactcggtc gataaaatta ccaatcgcac cacctagaat
    48061 aaacgctaaa ctaatagaaa atagtcgctt tcctttggca tatttttgca taatataaat
    48121 tataattcca ataacaacaa cagtaataag atagaaaaac cacatatgtc cttccaaaat
    48181 actccaagcc gccccgtcat tacggtagct tgtccagtat aagaaaccag gaataacttc
    48241 tattttctgt ccaatttcca tattttgaac aacaatccat ttagttaatt gatctagcgc
    48301 aatcactgct agggtgatta gataatagta cattttccga accctctttt cacatcagtt
    48361 agataaaaag tacgcgctcc cctttaaaaa taagaagagc gcatcacttc tttgttattg
    48421 tatgataaat tgaagcaaaa ataaagctgc aattacatac atgactggtg aagtacgttc
    48481 ctcatttttc gtgaaagcac gaaggattgg atacgcaatg aaaccagctg caattccgtc
    48541 tgcaatacta tacgtcagcg ggattaacac aataatcagt agtgctgaaa aagtttctgc
    48601 cgcattcgat aaatccattt ctttaaattc ttgcagcatc gacataccga taataattaa
    48661 aatcggcgca atcgcactgt tcggaataaa agataatacc ggcattaaga aaagggatgc
    48721 gataaagaac agaccagttg ttattgttgc taaaccagtt tttgctccac tcgcaaacat
    48781 cgagccactt tcaagtgcag agatcgttgg gcttgtacca aataagccag ataaaaaggc
    48841 tgtcagtgag ctagctttta aaatgcgtgg taatttttcg gtttgcttca gttgccttac
    48901 ttgtccattg gtaagtccaa ctgtttcaaa cacaataacc atcgtcatcg taaagacggc
    48961 actccaaaaa ccaacgctcg ccattccgga aaaatcagct ttaaagagta catcactcca
    49021 cggtgcaacg cttatcgaag cacctccagc tttcccggca acaccaaaca tcacaccaac
    49081 gactgtcccg attattaaac tccataagaa agcgcctgga atttttcgaa taactagaat
    49141 catcgttaat agtagtgtta caagtgttgc taatacgaat ggatcgccta aatctccaac
    49201 ggcaataata gcatgtttcc cgcgcgtgac gattccgccc ttctcaagcc ctaggaagat
    49261 taagaataaa cctaacccaa ccgtaatcgc ttgttttaaa atgagcggaa tagcttcatt
    49321 tagttttcct gcaagtggtg taaacgcaag aatcataaat agtaagccac tcatcgtaac
    49381 agcagcgagt gcaacctgcc aacttagtcc cattccttga acaagggtat acgcaaacag
    49441 cgcattaatc cccatcccag gcattagaat aagcggtgca tttgcccaaa atcccataat
    49501 caaacaacct aacgccgaaa taaaaatcgt cgcaaggact gctccttgat aaggaactcc
    49561 agcctccgct aaaatcgagc tattgacgac aataatatat gccaccgtaa aaaagccaat
    49621 cataccagcc aaaaattcgg tccggaaatt ggttttatgc tcgttcagcc gaaatacttt
    49681 gttgaaaaat ttctgcatac tttttcctca ttatgaaatt gtccctctcc caacccgcag
    49741 agtattgccc ctgccacaga actttattat aacaaagata gtacatatac gaaaggaaaa
    49801 gttttttgtt acgccgccag aacgccttat ttatgctata atctgaatgg atgcaaaaag
    49861 gagatgatta cttgcaaaaa acagtcacat atggggcaaa atggaaacaa tttttaacga
    49921 tattcacacc gattgtcatt acgcaactca cgcttttctc tatgacattt ttcgatacga
    49981 cgatgagcgg aaattattca aatcaggcac tggctggtgt agcaattggg agttcgttct
    50041 gggctccagt aaatgctgct ttttctgggt tactgatggc catcacgcca atcatcgccc
    50101 aattaatcgg agcgaagaaa gaaaaacaag tcaaaaacac ggtgcataac ggtctatata
    50161 ttgctttatt tttagctttt attttaattc ttattaattt tttggtcgtt ccaacgattt
    50221 tgacacacat gcccgttacg gcagaagtcg cggggattgc tcgtcatttc ttaaatggca
    50281 tttgtatcgg aatcccggct ttctttattt ccgcgatttt gcgttctttt attgattcgc
    50341 ttggtttaac tagggtaacg atgctcatta cactttgtac agttccattt aatatctttt
    50401 taaattactg ctttattttt ggaaactttg gttttccgga aatgggtgga gctggtagtg
    50461 gttacgcgac agggattacg tattggctcg ttgttttagt tagtgttatt ttgattcaaa
    50521 cacaaactag attacgaaaa tttggtattt tcaaagggct tacggcactt cgtttttcta
    50581 agataaaaga gatcatcggc attggcgttc caaatggttt gacaatttta tttgaaacga
    50641 gtattttctc agcggtaacc attttaatgg gggcctttgg gacggagaca attgcggcac
    50701 atcaatccgc aaatagtgtc tgcacactgc tctatgcttt cccgcttagt gttgcttcaa
    50761 cgttgaccat tcttggcggg tacgagacag gggcaaaacg cttaaaagat gccaaacagt
    50821 atcgtcatat tggtatggct gctgcgattt tcattggttg tgtaaatggt gcaatcctat
    50881 ttttcttccg cgatattatt gctggttttt atacgaacga tcccgctttg agcaatttaa
    50941 tcatgcattt cttagtttac gcgatattgt ttcaatttgc ggatgctgtc ctgtcgccag
    51001 ttctcggggc acttagagga tataaagatg ttacggtcac ctcgattgtt gcctttattt
    51061 cttattggtt gattgggctt ccagtaggct acggtttatc gtttacgaat cttggcccat
    51121 tcggttactg gatagggtta agtactggcc tgtttgtcgc cgcatttatt ttatccattc
    51181 gggttcgtaa aacggagcaa aaactttctt tcaacacaaa agacgcagag atttcgagtt
    51241 aatctctgcg tcttttttta tttggctaaa ccatcatgaa ttttatctaa attgtattgc
    51301 atcatttcta aatacgtgtc gcccacttca ccttttttag cagtggagtc cgtgaagatt
    51361 tttgcgaaaa ttggtacgcc tgtttcttta gatacacttt ccatactacg tggatctacg
    51421 cttgtttcga caaataaatt aggcactttt tctttttcca cgataccgac aatttgtttc
    51481 atttggtctg gagtaccttg actttctgta tttatctccc aaatatatgc tgcttttaat
    51541 ccgtagcgag ctgcaaaata tttaaaggca ccttcgctag ttactaatgt tttttgattt
    51601 tctggcaaat ctgcaaattt ttgttttgct tctttatcca gagtagctaa tttgttgata
    51661 tattttttcg cattctcttt ataaaaatcc gcattgtctg gatccgcttt tacaagtgca
    51721 tcacgaacat tttcagtata gataattccg ttatgaagat caagccatgc atgtggatct
    51781 gtttcagacg tcttgccttt ttccgttaag tatttgggtt ttacaccttt acttaactcc
    51841 accacttgct ccttgtcgtc tcttgattta tccgccgttt ctaacatacg atcaaaccaa
    51901 ccattccctg tttccaaatt caatccattg taaaagatta aatcagcatc cgcagcactt
    51961 tgaatgttgg ctggcaaggg atcatattca tgtggatcaa cgccaacagg cacaatacta
    52021 tgcagttcaa ttttatcccc gcctacattt tttacaatat ctgctaatat cgaataggtg
    52081 gctacgacat ttaatttgcc gtctgttttt ttcgaatcgc tattttgact ggaacacccc
    52141 gcaagcacaa ctactaatgc gaaaagagct acaactatta tttttttcat tcgataacct
    52201 cccttttttt agaaaatagc aaaccttgtt tcggtgcgaa taaaaaggca ataaagaaaa
    52261 taatcgtcgc aactaaaacc atcgccgcac cagatgctaa gttgaaaatg taactaaagt
    52321 aaagtccgat aatcgcactc actgctccaa atgtagaagc taaaacaatc attttggata
    52381 atttattcgt aagcagataa gctgttgcag ctggcgtaat taacatcgcc acaactaaaa
    52441 tgattccaac cgtttgcaaa gcggaaaccg ttacaagtgt taaaagtaac atcaagaagt
    52501 aatgcaagaa tttcacattg agaccatatg cttctgccat cactggatca aatgaactaa
    52561 ctagaaactc tttgtaaaat agggctacta atgaaatcac gataatggca ataataatcg
    52621 tcatccacat atccgaactc cgcaccgcaa gcacatttcc aaataaaata tgatacaaat
    52681 ccgtactact tttcgcaaag gatattaaaa taatacctag tgcgaaaaaa gcgctaaaca
    52741 caataccaat cgctgtatca ttttttatcc gacttttttg attaacaaaa ccgattccaa
    52801 gtgccgctgc aatgccaaat gtagctgcac caataaagaa gttcataccc atcatataag
    52861 aaatcgctac tcctggtaac accgcatgag aaatcgcatc tcccataagc gacatacctc
    52921 gtaaaataat aaaactacca ataacacctg aaacaatgcc aactgtcaca gaagtaataa
    52981 gtgccttttg taaaaaacta tactgcatta atccttctaa aaacaacatc tattacaccc
    53041 ccgtcgcaaa tgccaccggt gcgtcaccgt aagcaaattg aattttctct tctgtaaatg
    53101 tttgctccac tggaccgtgc gcgactaact tcttattaag taaaatgata tcgtcgaagt
    53161 aagcagccac tttatgaaaa tcatgatgga ccacgacaat cgttttccca ttatctctta
    53221 gcttttttaa caggcgcata atcagcgctt cactcgtcat atcaatacct gcaaatggct
    53281 catctaaaaa gaaaatttcc gcatgttggg caagtgctcg tgcgataaaa acacgttgca
    53341 gttggccgcc agatagctct cctatttgtc ttttcataaa gcctgtcatt tctacttgtt
    53401 ctaacgcatc taatgcgagt tgtttctctt tttttccggg acgcttaatt aatccgagcg
    53461 ctggatacgt tccgagcaac accatatcaa aaacggtaat tgggaaagtt aaatctactt
    53521 cactccgttg cggtacgtat gcgattttct ttctccaata tgtaagtggt ttgtcagcca
    53581 atgtgacctg cccttgttca cgcggaatta gtcccatcat tccttttaat aaggttgatt
    53641 tacctgctcc atttggacca acaatacccg ttagttttcc tgatgctatt tgaagtgtga
    53701 cattatcaat tgccaccttt tgtttatacg ctattgttaa accttgaatt tccatctaaa
    53761 ccaccctttt cccacaagac taatttttac acataactaa aaatgtttcc taagagcaac
    53821 tttagttcaa agtataacgg agaatctttt tcttgtaaag taaaatgttc aaaaaaatcc
    53881 cgtagtcgat taaactacag gattttcact attattattt aattgatccg tctgctaatt
    53941 ttttgagcag tttgcggaat tctgcttgtt catactcaga aaaaacagca aaacgtttta
    54001 caatcatttc ttttttcttt ttatcaattt ctttgacaaa ttcctcggca tttggggtta
    54061 atttcagttc aataattcgg cggtctactt ctgaacgatg tcgtgtaata aacttttctt
    54121 cgactaaagt atccgtaatg gctgtgatgt gactggctga aacatcaagc gttttagcta
    54181 attctgatgt tttcgtaagt ccacttgaaa tcaagctcaa gacccgatac tcgctaccac
    54241 ttaacctttt gtcgagtact gcctctactt catgacgaaa actattaaaa atccgcttaa
    54301 tcaatgtttc aatttctaag tatgtttcca ttttcgctac ctccagtttt tcaaaaaagt
    54361 cgtacgttta cttcaccaag gcttttgctt tttgtagttg tggatctgtt tcttttagat
    54421 gtttttgtgt taattcgact aatttatcgg ttgttacacc tgtcataatt cctgtcacat
    54481 ctaatttatt tgctgcttgg aatctttgaa cagcatattc tgtgtctgta tcgtataagc
    54541 catctacttt cccaacattg taatctagtg cttttagcaa tgtttcaatg gttttaacat
    54601 catcaccgaa atcgccattt ttgtagactt tggtggaaga cgggatagtc atagttgcat
    54661 aatctggcat gttcacaact acatctggcg taataccttt ttcatgaatc cattcgctat
    54721 taggtgttaa ccattttgcg acagttaatt taagcgtgga gtcatcagat aaagttgttg
    54781 ccgtttggac cgtaccttta ccaaatgatt tcgtgccgac aagtttaatg ccaccagatt
    54841 cttttgctgc agcagcaagg atttctgaag cacttgcact accaccatct attaacatag
    54901 ttgttggtac ttttacttta taatctccat gtgagctact atccgcttta atggctgatt
    54961 tatcaccgtc tttgtcctgc tcttgtacaa caattttgcc atcgggaaca aagaggctag
    55021 aaatcgaaac tgcttgatca agtaacccac caggatttcc tcgcaggtca agaacaaggc
    55081 ccttcatgcc atctttttca agggatttca atgccttttc aagctcatca taggttgttt
    55141 ctgaaaatgt actaatggtg acgtgcgcaa ttttgtcact gcccatttct ttgtacaccg
    55201 tttcgattgg aatttcatca cgagtaatcg tgacatcaaa tggtttatct tcgttggaac
    55261 gttgaatggt cagggttact ttggtgcctt tttcaccacg gattttttgt gttgcttctg
    55321 ttgctgtatc gcctttaaca gacttcccat ctacttgtgt aataatatct tgtggccgta
    55381 aaccagcttt ttcggctgga gagtttttga ttggcgaaac tattacaata gccccatctt
    55441 tttcttgaat ctccgcacca ataccttcaa aactagcaga aattgtatcg ttaaactctg
    55501 aagattcttt tttcgacata aatgtggaat atggatcatc taatgaattg accataccat
    55561 ttattgctcc atctatcatc gttgtagatt ttgtatcttt ataatatttg cttgtaattt
    55621 cgtcgtatac atcgtagagc ttggtaaatt cttttcgttc tggaatgctc acttttactt
    55681 gcttgtcatc ccctaaagac attacgattg tagtcactaa tgccgtcaca aaaacaaaag
    55741 cgaatagtag cattataaat gggaataact tcatttttat ataaccattg ccgggttttg
    55801 ctttttgttc ttcgtctttc tccacgttat ttggttcgtt ttgtggggat tcttccatct
    55861 ttcttcacca ctttctatgt aaaatgtggc tagtaatagc acattttatt taactcattt
    55921 attttaccag ttttccattc attttggtat ctttttttca tgctacacaa aaaaggagga
    55981 ttctggacag aatccccctt ttcgctttta aattaagcta cttcataacc tgcttcttcc
    56041 acagcatcaa ttaacgcatc ttctgtcact tgtccttttt caaactcaac agtagctgtt
    56101 ccttcatcaa gtgatactac tgcacttttc acgccattaa cttctgataa agcttttgtt
    56161 acgcgagcct cgcagtgaga acaagtcata ccttctacat ttaatgttaa tttttccatg
    56221 ttaaattcct cctatgattt aaatttatat ctttttaagc gaagtgcgtt tgtgacaaca
    56281 gaaacggaac taaatgccat cgcaagtcct gctacccaag gggcaagtaa gcctagtgcc
    56341 gcaattggaa tacccgcaca gttatatgct agcgcccaga aaaagttttg acggatgttt
    56401 cgcatggttg ctttggaaag ttcgattgtt tctggaatga gtgttaaacg atgacttaca
    56461 agtgttacat ctcctgtttc aatcgcaatg tcagttccag taccgatact aatcccaata
    56521 tcacttgccg caagagctgg agcatcatta atgccatcac caacgaatgc aacgatatga
    56581 ccgtcttgct gtaatttctc gactaaggcg ctcttatcat ttggtagttg ttcggcaaag
    56641 aacatatcaa tacctaaatc tttagccata ttttctacga caacagattg gtccccagaa
    56701 caaattgctg ttttaatacc ttgtgctttt agtttttgga tagcttcttt tgcttctggt
    56761 cgtggtgtgt cagataaagc gagggcacct gcgtatacac catcaattgc cattgctacg
    56821 actgtttttc ctgcatgcat ccaactttcg attaattcat catcttcttt tggaatcgtt
    56881 gtaagggaag aaacatagcg gtaagcacct agttccactt tactatcatc cagattaccg
    56941 gtcatgccgt gcccagcttt cgcgcggatt ttcccttgtt tcactgcgga agcatctata
    57001 ttctctggct ctaacatctt aataatcgct ttcgcaatcg gatgctctga ttgttgttcc
    57061 attaagaata aataagggaa aaagtgatca ttggctgctt ttttatcact cacttctagt
    57121 ttaccttctg ttaaagtacc agttttgtca aaaacgatag tatccacttt ggaagtacgt
    57181 tctaaatgtt cgccaccttt aaataatatc ccactttcgg cgcctttacc agttccagcc
    57241 atgatagcgg ttggcgttgc aagaccaagc gcacagggac aggcgataac taataccgca
    57301 atcgcagctt caagtgaacc atccaccgtt ccagtaacaa gataccaaat aataaaggtt
    57361 acagcagcaa tcccaagtac aattggtaca aatatgccgg aaattctatc tgccaaacgt
    57421 tgaattggcg ctttaatacc ttgcgcttct tccaccaaac gaataatgga ttctaaaacg
    57481 gtttcttcca ttcgtttcgt aatttttgct tggaaagccc cgtcaaagtt aatcgttgcg
    57541 ccaataacag aatcgcctgg tttcttctct actggtacag gttccccagt aatcatcgct
    57601 tcatcaatac tcgtttcacc agaaataatt tcggcatcca tcggaacttt ttcacccgga
    57661 cgaacaagga taatatcgcc aattttcaat gaatctactg gcactaacca ttcttttcct
    57721 tctcgaataa cggtcgcttc ttttgcttgt aattcaagta aaccagcaat agattcggtt
    57781 gttctcgatg ttgcgtatga ttcaagtaat ttacctaaca agattaaggt gattaacaca
    57841 gcacttgttt caaagtagta atgcggcatc acgctcggat caatcatgtg acgaatgtat
    57901 tccactacac tatagaaata agcagcagaa gtcccaagtg cgactaatac atccatattt
    57961 gcacttttac ctcgaagcgc tttataagcc ccatcataaa accgccaacc aatataaaac
    58021 tgaacaatcg ttgcgagtac taattggatg gttggattaa tccagttacc aatcgtttcc
    58081 gcaaacgcca tttcatgaat gtacggaata tgtgtcacca tggtaagaag taatggtaag
    58141 gaaagaaccg ccgaaagaat aaaacgtctc acttcttttt tgaaattctt ttctaacaca
    58201 gcatcttttt cttctttaga cattttttcc gccgcgtcat aacccgcatg tttaacaact
    58261 ttaattaaat cttctgtcga tgtaacttcc gggtcgtaat atacggctgc attttccgtt
    58321 actaagttga cattcgcttt ttctacacca tccgctttat ttaacgattt ttcaattctc
    58381 gtggaacagg ccgcacaagt cattccaaaa atgtttaaat cttgtcttac atatttatca
    58441 ctcatcgtat atacccccct caggttttcg aaaattgacg tattgcttta agtaagtcct
    58501 ccattacgtc atcttcccca ttttttgctg catctacaac acagtgtgct gtatgatgtt
    58561 ctagtacttg taaaccaaca tttttgagcg ctttattcgc tgctgaaatt tgaactaaaa
    58621 tgtctgtaca atatctatca tcctcgacca tttgagcgat accgcggatt tggccttcga
    58681 tacgtcgcaa acgattttga agtaatttcg tttcatcttc tttgcgtgga acaattggtt
    58741 gatcgtgttt cattttttct cctcctttgt ttctacaatt aacagtatac cccctatagg
    58801 tattttatgc aaccatttaa tttctgagaa caaaaaaaag ccataaacaa atgcttgttt
    58861 atggctcaaa atcttgttat ttcgcggcat ctactttctt ttgaagtgcc ttaacatgtt
    58921 caaaaaattc ttctaaagtc cagttgtttt cgtaaataat cgttgccgca tccttaccaa
    58981 cataacgata atgccaagat tcatattgat acttcgtgat agcttctcgc cctttcatat
    59041 aacgcaagat aaaaccataa ttgtgggcat tttcttgcaa ccatttgcct tcaggagttg
    59101 ttccgaatgc ttctgtgagt tcatatgatt ggttttctga tgagatatcc atcgctaaac
    59161 cagtttgatg ttcgctagta cctggatacg ctactgcttc tctcgctttt tggtcacctt
    59221 tcgcatttac ttctgcttgg aagacttctt gctggcgttt gtacgatcga taaccagata
    59281 cggcgaatag tttcttacca tctttgttcg cagctacgaa catttcttct aatgcagttg
    59341 ctgcttcttt tcttagctgt gctttttcga cttgttggct gccaaaagag aatgtaacat
    59401 ttggacgaac caagtcaggg ggggtatatg ttggttgcaa tgaataatct ttgttagcta
    59461 aaaccaacat attttcctca ttttcaatat actttatacc atctttttct gttaatttat
    59521 tttgtttatc aatgtatgga taaagtggat ctttttctaa ttccgcaagt gtttgattgc
    59581 ctgacgattt ttgctccact ttagcgatgg aatcagcatt tgtgccacca aaatattgat
    59641 cttccactgt gtggacacaa ctgatgctaa cagctaaagc aattgttaat aaagaactca
    59701 tatctgttta tcaaccttcc tgtatacatt aagtctaatt ctaagttagt aattaaaatt
    59761 attttattgc tgcttcaagt gctacaacaa tcatatcatt gaaagtagtt tggcgctctt
    59821 ccgcggatgt ttcttcccca gtgaaaatat ggtcacttac agttaaaata gctaaagcac
    59881 gacgaccata tttttgtgct aacgtataaa gtgccgctgc ttccatttca attccaagca
    59941 caccatagtc tgctaattgt tgtttgtcta gttgatcatt ataaaaacgg tctgcagaaa
    60001 aaacattccc aactttaagc gataatcctt tttcgatacc tgcatcatac gcttttttta
    60061 gaagagaaaa atcagctact ggtgcaaaat ctacgccagc aaaagtattg cgattaattt
    60121 gcgaatccgt tgatgccgct tgtgcaatga caacatcacg tacttttaca tccgcttgaa
    60181 tgccgcccat agtaccaacg cgaatcaagt ttttcacatc atagctttga attaattcat
    60241 ttacataaat cgaaatagat ggaattccca taccagttcc cataacagaa actttttcgc
    60301 ctttgtatgt accagtaaat cctaacatgc ctcgcacttg gttgaataaa acgacatctt
    60361 ccaaaaatgt ttccgcaata tattttgctc tcaatggatc tcctggtaat aaaatagttt
    60421 ctgcaatttc cccttgtttt gcttcgatat gtacgctcat cttttttcct cctagtgttt
    60481 gtttttctct tcatctagca aataagcatc ccaaagttca tcaaaaatag acattcccgg
    60541 taaatacggc gcattaaact ccagataatc acaaagaata tggtagtttc ttgtttgctt
    60601 tggaaaacta tgatctcggt atgcattgtt ggcaaattcc gttttctgat ctgttagctt
    60661 cgggtcccga tatgtcatta aaaaatgata aaatgatctt cccaacgtac aacacactcc
    60721 gctcttttta tgctttaact atagttgatt tcctgaaaaa aataaagtta attttcgatt
    60781 ttacgtagaa tttcttctgc aagtcgatgt gtttctaagg catcttcttt ggaaattggt
    60841 gctttttccc catttcgcac ggccgttaag aaggcttgga tgatagatac aaaacctctt
    60901 ttgtaaagcg tcgtttccca atctccaaaa cgctcaaacc gctctgttgt cccttcataa
    60961 atatgcgttt ccgtaacatt ttctacttca tatttggcgc tcggggtcat cactgctaat
    61021 cgttcttcgt tcacgccact atctcggttc ataatcgccg ttgccacttt acctcccgct
    61081 gtaatttgta ccgttatact tgctagaagg ttctcttgcc ataccggaac gacatgtaac
    61141 tgttctattt gggcatctag taaaaaacgc acggtatcaa tgacatgaat aaaatcgtca
    61201 taaataaatg tacgagcctc acccggttgc gccgcgcgat ttttttgcat aataatcatg
    61261 ttggtatctg ttaaggcttt taattcttga tattttggcg cgtaacggcg attaaagcca
    61321 gtcataagta acgtattttg ttcttcagct aggcgtgtta attcttctac ttcggataaa
    61381 ttgtcggcaa ttggtttatc cacataaact ggaatatgat ttgctagaaa agtccggatt
    61441 acttctgggt ggcttgctgt agatgaatga acaaacgctg cattcacgcc agactcaatc
    61501 atagaatgaa tactttgatg ataatgatca aaacgatatt tctcacttaa atgctttaat
    61561 ttctgcgcat ccctcgtgta aagatgtacc tcgatatttt ccatttcagc aaaaactggc
    61621 aaatatgctt tttgtgcaat gccgccaagc cctactaccg ctatttttaa catgtgtatc
    61681 gctccttatc acaacaatgc cagagaatga tttcgcgata ttattctaca catttcattt
    61741 tctggcatca tgtgtttatt caaagatttt cttatatgct tggtagcctt cttcttctaa
    61801 cttatccaca ggtatgaatc tgagcgctgc ggagttaatg cagtagcgaa gtccaccctt
    61861 atcttgtggt ccatctggaa aaacatgccc taaatgggaa tcagcatcag cagatttcac
    61921 ttccgtccga atcataccat gggtcaaatc tcgatgttca ataacttctg cttcatcaat
    61981 aggcttagta aagctcggcc aaccacagcc agcatcgtac tggtcattgg atgaaaaaag
    62041 cggctttcct gaaacgatat ctacataaat gccttttgcc tcattatcat aaaattcatt
    62101 ttgaaatggg cgttcggtac ccgctttttg ggtcacatta tattgtatat ctgttagttg
    62161 ttgaaggcgc tcgttctttt tactttcatc catttgattt caccctttcc agttggcatc
    62221 tatgaatgca gcacgacctg aagcaacttg atatccctca tagtgcgctt tttctttctt
    62281 gtaaaaatct tgatgatatt cttcagcagg ataaaatgtt tctgctttgg caatttctgt
    62341 gacaatcggc tttttaaatc taccactcgc atcaagggct gcttttgatt tttcagcaat
    62401 ttctttttgc tcttcattgt ggtaaaaaat aactggtcga tacgaatcac cacggtcaag
    62461 aaattggcct gccgcatcag tcggatcagt ttgttgccaa tatacttcga ctaatttctc
    62521 atatggaaaa actgccggat caaatgtgat ttggattgct tctgtatgtc ctgttgtccc
    62581 gctgcaaact tctttatagg ttggattaac cgtatgacca cccgtataac ctgaaataac
    62641 tttttcaatt cctggttgcg tgtcaaaagg ttttaccata caccaaaagc atcctccagc
    62701 aaatgttgct ttttcaagtg attcttttgt cataaaaatg ccccctaact aggattcagc
    62761 cagccaaatt acttaactgg tactaaaagt gtaaacgaaa tgtcatcttt cttcaaattt
    62821 agcgtatcag cacgtacttt tgtgccgcct tgcagtttta gtttatctag ggaaaggtag
    62881 attttttcct ttttaggcat aattgtcacc caatcaggga atttatagtt tttgcttaca
    62941 tagttcatta cgtaagacac gggcagtggc aaagcgccaa cggacatatc tttaagcgtc
    63001 aactcaacat tgccattatc gacaacttcc ggtgagaatt tcaagcgtag ttcgactggt
    63061 tcaccaaaaa tttcagcttc ggcagtaaaa ttaacattat ttgcgacgaa aactttataa
    63121 ccgatatctt gatctttgct aaaatcttct atataagaac taatcaattg gtttaagtca
    63181 gcttttgttg tactcgtttg aaattcaacc attgatttat tgctaatcag ggatggcgtg
    63241 ggttcatctt gcgggctgag tttgaatact gctacataaa tccagccagc agaaattaga
    63301 agtacactaa ttaatgtgat acatacccat ttccaataat tacgttttgg tttttttgga
    63361 gccgatcgtg tttctctctg cacgatttta acacctttct atttgggaat attgccttcg
    63421 tttaattgtt ttacgatggc tttgtctaat tccgatgtca tcttctcata tcctctatga
    63481 ttaggatgga aataatcatc tgacagtagc gaattaggtt tatctttatt atctgcattt
    63541 cggtcttcta aaacttttgc aataggtaca aaataagcat tgctatcttg ctggatagtt
    63601 ttcttggaag ctttattcca atcagagata atctcgtcaa attgtttgat atcgctgaaa
    63661 taagttgtat atggattgta aatacccatt aaaaatatcg ctgcatcttt gttataggac
    63721 cgaatgtctt ttagaagtgt ctctaactct tgttggaatt ctttgtttgc ttttgtaaaa
    63781 tcatctacat ttacatttaa cagacgagat tgcaaaatag ccatgacatc atttccgcca
    63841 atggtgattg ttattacatt cgcatttttg acatcttctt ggaagtcttt gtttgttttt
    63901 aaacgttttt cgagttgggt tattttgttt ccagataccc cgtaattact cgtttttacg
    63961 cttggaatgt ttgattcttc ttctagttct ttagggataa tgccgacata tccgccccct
    64021 ttgttttcat caccaacacc ttctgttaat gaatcaccca tggcaacgag attaatcgga
    64081 atttcttttg attctttata atacttgata ccaaaaactg cgccaacaag aagtgcgata
    64141 acaagcacgc tccctgtaag ccacagccat tttttctttg tcatatgcaa tcactcactt
    64201 agtcagtata gtacataaat gcaaacgcac cagttccagc atgtgtggag ataactgggt
    64261 ctgcaaaaaa tagtggaatt tctgttaaac cggttatttc ttttgattca gcgatgaaat
    64321 catccgccag attaagccca tccgcatgaa caacgtctag atgctgaatt tttttcggtt
    64381 catctttaat taggtttagg caatattgta atactttttt gttgctgcgg actttcgttt
    64441 cttcttccaa ttgtccgtca gttaatttgg caattaattt gatatttaaa agactaccga
    64501 agaagccttg catccgtcca acacgtccac ctttaattaa attatcgagt gttacgacaa
    64561 cgatataaag ttttgttttg tcacgaatat cattaatttt tgcgtgaatt tcctctacag
    64621 aataatcgcc cgactgagcc atttcagcag cttttagtac ttggaatgct tgcccacgag
    64681 ctgtataatc gcagtctaca accgtaatat ttccttctac catatcagct gcttggcgag
    64741 ccgcattgac agtaccactt agtttttcag ttaagtggat agaaagaatt tcatagcctt
    64801 cagccgtata tttttcgtat gcttccacaa aagaaccaat cgcaggttga gaagattttg
    64861 gtaattcttt tgtttctgcc attcgtacca taaattcttc tggtgtaatg tctgttttag
    64921 ggttgtatat ttgcccatca atttctacgg ttaaatataa aacatcaata ttccattttg
    64981 ctgcttcttc taatgttagt ccagcagttg aatctgtgat aatttttatt tttctcatat
    65041 agccacatcc agttttgctt attttatctt attataacat ccccggcagt atacacaacc
    65101 tataaactag ttttaagaaa agagaaagaa atggtatttg tctttctatt ctgtattttt
    65161 tagcgtatga tagatatata aaacacacaa aatttgtaga aaagtatggt gataaaatga
    65221 atgtcacttc ttacaattgg aaagaagaag tagccaatgc tataacgcat ggtattgggt
    65281 ttatccttag tattcccgcg ctcgtcttac ttataatatt cgccgccgga aaagataatc
    65341 ctctttattt aacaagtttt ttaatttatg gaatttccct catgttgctt tatatttgtt
    65401 ccaccctgct tcatagtttt aaaccttgca aggcgcggac ggtttttaac attatggacc
    65461 acgcagcgat ttatgtatta attgctggca gttatacgcc atttgttttg attacgattc
    65521 aagggacact cggctggaca ctatttggtg tcatttgggg cctcgcaatt gctgggatta
    65581 tttataagat attcatgact ggcaaattaa aacttttgtc gacaagtgtt tacttactta
    65641 tgggttggat ggttatgttt gccattaaac cgctttatgc cgggctgact ccaactgggt
    65701 tttggttact tgcaactggt gggattatgt ttacagtagg tgctgttttt tacagtatcc
    65761 ctcgtgtccc gtatatgcac gcgatttggc atttatttgt tatcgcggga accgctttta
    65821 tgtatttctg tattttattt tatgttt
//
LOCUS       DASDXX010000002        65822 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.002, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000002 DASDXX010000000
VERSION     DASDXX010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 65822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 65822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..65822
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.002"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..495)
                     /locus_tag="U0280_000066"
     CDS             complement(<1..495)
                     /locus_tag="U0280_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM2270032.1"
                     /translation="MEKKVVKFFTVDNMEKEEAYLNEMAQNGWFFQKYKSFRYHFKQG
                     EPAKYSYAIDFKENEGDEDAYKTLFEDAGWETVFSYPVLNGNWMYFRKAVAPGETEEA
                     IFTDETSLIQLYKNIRKRWTIFGAIVSLFLLIELLIVFQMENNIGITTFIFIIFLILV
                     ALYGK"
     gene            complement(498..809)
                     /locus_tag="U0280_000067"
     CDS             complement(498..809)
                     /locus_tag="U0280_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM2270033.1"
                     /translation="MNEKLRKAYLPMTETAFYILLSLVKPRHGYAIIENVAKMTDDRI
                     KLGPGTIYGSLSKMNKDNLIQIIQEESNRKIYQITEIGTDILQLEKARIEELYRNSRE
                     V"
     gene            complement(840..1370)
                     /locus_tag="U0280_000068"
     CDS             complement(840..1370)
                     /locus_tag="U0280_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2270034.1"
                     /translation="MKIRIIGSVGSGKTTLAKKLSEWQQIDYFETDRIVWKREETEVR
                     RTDNEKIAVLNKILQQENWIIEGVHLEAWVDESINQADVVIFLDLPKKQIRSQIIKRQ
                     IKQLIRLEAAHYPIRFNMLKKMFYWDDLFDQRTKPLIARKMAQNPTKWLIIKEKTVFQ
                     EIKNGVLQIISSRDIL"
     gene            1459..1908
                     /locus_tag="U0280_000069"
     CDS             1459..1908
                     /locus_tag="U0280_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEM2270035.1"
                     /translation="MIILFIVSGLLAGMVLPVQTAINTRLSTYTKSPFLASWVSFMVG
                     TTVLLIVCLFTQKSWPISSEMIASNPWYIWVGGGTLGVIFLTANILLLPRLGSALLVM
                     ITVCGQMIMAIIIDNFGLFQVPMHEINIERLLGVILMFGGIYLMQRF"
     gene            1923..2390
                     /locus_tag="U0280_000070"
     CDS             1923..2390
                     /locus_tag="U0280_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEM2270036.1"
                     /translation="MTKRSSKSLLLFMAMGLVSGLLSPIQTSINSQLRLTVGSPFVAS
                     FISFLVGTTLLTLVCLIVERRLTFQLKGVGRIPWWVFTGGALGVLFVTSNILLLPLLG
                     SAMTVVLALCGQMIIALIIDHFGFFGVIPHPINRYRMIGVLLMLVGVFLIQRF"
     gene            complement(2435..3001)
                     /locus_tag="U0280_000071"
     CDS             complement(2435..3001)
                     /locus_tag="U0280_000071"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEM2270037.1"
                     /translation="MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYT
                     ITTLGAEPEIQAELEQIQQQLFDAGGDLATEEGKRAYKLTSEPVAWLEDRIDIYADEP
                     PEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFA
                     VARVVNYRAGETDIFYKNSELVFRNKKK"
     gene            complement(2965..4500)
                     /locus_tag="U0280_000072"
     CDS             complement(2965..4500)
                     /locus_tag="U0280_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEM2270038.1"
                     /translation="MVKQIMIQGTASDAGKSVLVAGLCRLFKNKGKRVVPFKSQNMSL
                     NSFITATGDEMGRAQVFQAEAAGVFPDVRMNPVLLKPTNDRQSQVVFMGAILDNMDAV
                     TYHDFKQTLIPKIQAVYQSLADENDIIVLEGAGSPAEINLNDRDIVNMGMAKMVDAPV
                     VLVADIDKGGVFASIYGTIMLLNEEERARIKGVIINKFRGDVALLQPGIDMIEELTNV
                     PVIGVIPYANLQLEEEDSVSLSGKNYVPDSNALLDIAIICLPRISNFTDFHILEIQPD
                     ISVRYIRNIADFGNPDLVIIPGSKNTLEDMAFLEESGLKNAIQNYAKNAGKVIGICGG
                     YQMLGKKMLDPNQVESKQLEIAGLGLLDTETIFLDQKRTTQITGVTHSGEAVEGYEIH
                     MGETKRGESTSPFCEIKAVNGNEETHQDGAISVNKNIIGTYIHGIFDNDVFLGNLFDE
                     LLTGKNKSVYPHEIINLKEHKEQEYDKLAALLEANIQMDQLEKIMKGEKICVSTQKPA
                     IKE"
     gene            complement(4500..5306)
                     /locus_tag="U0280_000073"
     CDS             complement(4500..5306)
                     /locus_tag="U0280_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2270039.1"
                     /translation="MLKTEHISFQYEDGKQALTDVSIDLEKGNIIGLIGANGSGKSTL
                     FMQLLGINKPSDGTVYFEGKPLAYTKKALFALRKKVSIVFQDPDQQIFYSNVRDDVAF
                     ALRNLGVSETEVEARVTKVLDIVGAKDFQHKPVQYLSYGQKKRVAIAGALVLDTDWLL
                     LDEPTAGLDPIGKKIMMEIIERLASQGKKILISSHDIDLIYEICDYVYMLKDGSVLTD
                     GETSNVFLEKSNVEQAGLVQPWLIKLHQQAGYPLFKKEADFFAHTGKVTN"
     gene            complement(5319..5996)
                     /locus_tag="U0280_000074"
     CDS             complement(5319..5996)
                     /locus_tag="U0280_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     transmembrane protein"
                     /protein_id="HEM2270040.1"
                     /translation="MLTIDKYAYQNRWIAFSPSLKALFYVAILILALTGPVLIQAILF
                     FCMVPLTLYVVKIHFKQYLKWLLLPFSFLLFSLLSILISISKDPSSFLASISIGSLYL
                     GVSDVTITTATQVFFRSIACLAATYFFVLTVPVVQLTKVMKRIFIPKVLIELTILIYR
                     FIFIFLEEAAAIRKAQSLRFGYHGIKNSYRSFGMLVNTLFNRVMKRYNEMVITLDVKL
                     YQGEFHI"
     gene            complement(5983..6279)
                     /locus_tag="U0280_000075"
     CDS             complement(5983..6279)
                     /locus_tag="U0280_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2270041.1"
                     /translation="MKKININVILILLVVLLMVSPFFFNKTGEYGGSDGEAEAEITKI
                     DPSYEPWFEPLYEPKSGEIESLLFTLQGCIGTGIIAYVIGVSRGKRKAENDVNH"
     gene            complement(6276..6926)
                     /locus_tag="U0280_000076"
     CDS             complement(6276..6926)
                     /locus_tag="U0280_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464729.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HEM2270042.1"
                     /translation="MHIMEGFLPVKWAVFWFIVFIPFLVLGLIRIRKLIALDKNNKLL
                     LALCAAFIFVLSALKIPSVTGSCSHPTGVGLATVMFGPLVVSVLGVIVLLFQALLLAH
                     GGITTLGANAMSMAVIGPMVGFVVYKLARKLNCNKSVSIFLCAMTADLATYLTTSVQL
                     GVVFPDPASGMMASILKFMAIFCVTQVPIAIAEGLLTVVMYNLISKNLPEKVAQLR"
     gene            complement(7007..7717)
                     /locus_tag="U0280_000077"
     CDS             complement(7007..7717)
                     /locus_tag="U0280_000077"
                     /EC_number="2.1.1.151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-factor II C(20)-methyltransferase"
                     /protein_id="HEM2270043.1"
                     /translation="MAKFYGIGTGPGDSKLVTMEAAERLGNLEILYTPQPKKGGESLA
                     KKIVSPYLKDTLIIKERHFPMSYNKEEKMLAWKEIAEEIKADVQNGHDVGFITLGDPM
                     VYSTYSYLLELLKGEIETVTLAGISSFSNIASKIELPLVMDEESFAVIPVTAGAEKIE
                     QALTLFDTVVLMKAASNLPLLTTLLKKLNLLDAAVVVSDVAMATEKITYGMNEINPDE
                     KMSYFTTIIVKKRREQYK"
     gene            complement(7710..8495)
                     /locus_tag="U0280_000078"
     CDS             complement(7710..8495)
                     /locus_tag="U0280_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin cobaltochelatase"
                     /protein_id="HEM2270044.1"
                     /translation="MKKAILVVSFGTSYPETREKTIEACEKKVAQEFPDYNVFRAFTS
                     NKIIKKLKTRDNMHINTPSQALNQLKELGYKEVIIQSLHIISGGEFEKITAQVEKFKP
                     DFDSIIVSQPLLDSMEDYEKAIEAIRHQMPPLKEQEALILMGHGSKHRAFSAYACLDH
                     MLLNEPIYLCAVESYPGLDQVIERLQQANIKKAHLMPFMLVAGDHATNDMASDDEDSW
                     KSTLEQAGIQTECHLQGLGENPLIQAQFIDHIHTAIERVKARG"
     gene            complement(8492..9973)
                     /gene="cobA"
                     /locus_tag="U0280_000079"
     CDS             complement(8492..9973)
                     /gene="cobA"
                     /locus_tag="U0280_000079"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEM2270045.1"
                     /translation="MGKVMLIGAGPGDAQLLTVKGLAALQKADVIVYDRLVEPAMLQE
                     RKASCKLIYVGKEPLHHPIPQEEIEQILVKEAATNELVVRLKAGDPYVFGRGGEEGET
                     LYKAGIPFEVIPGITSAIGGLAYAGIPVTHRNFASSFHVITGHLKKGRDPLDWEALAR
                     LEGTLVFLMGMTNLPNICANLLENGRKAETGVAIVQWASRGKQLTVTGNLQNIEQKVA
                     ESGISSPALIVVGDVVSLRPQLNFFEEMPLFHTKVLLPRARAGKSMLAEQIRDLGGEV
                     TMYPNIQVVDVVPTKTKEELREVSGLLFTSKEAVERFFDYLAQLDLDIRSLKNTHLTA
                     IGKQTKEAFSEKGIIPDSFIKRRSTELILEHLPRLQKNVSNLIIGSIVDTAEVNAILA
                     EVEAMEMMPLYDMRPVTERPFDLASFEQVCFSSSRSVQNLLDVLTTEEKAILQTKTIL
                     SIGRFTSATLASFGINNFIEAESATPESLIELIQKTKLEGVPQ"
     gene            complement(9973..10725)
                     /gene="cobK"
                     /locus_tag="U0280_000080"
     CDS             complement(9973..10725)
                     /gene="cobK"
                     /locus_tag="U0280_000080"
                     /EC_number="1.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6A reductase"
                     /protein_id="HEM2270046.1"
                     /translation="MIFVLGGTSDSLAISDWLTEKKQAFILSVATDYGETLAKQHAEN
                     VFCGRLSKEEMLLKWHATKVHLVIDATHPFATIVSETAMEACKEADIPYIRFERTSEQ
                     TDNTYLVADIEEACAVAMKLGKRIFLTTGSKNLPEFVAGLNNRHIIARILPVSDVIRS
                     AEELGLVADQIIGMKGPFTKEANRTQLEMTGADVLITKESGKQGGFQEKLAAAAELNI
                     PVIVIRRKKLNYPIEINHLSELPEILTQLEVY"
     gene            complement(10722..11447)
                     /gene="cobJ"
                     /locus_tag="U0280_000081"
     CDS             complement(10722..11447)
                     /gene="cobJ"
                     /locus_tag="U0280_000081"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HEM2270047.1"
                     /translation="MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIK
                     DKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLE
                     VKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYN
                     PRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMRDIDYELVDMTTM
                     VIVGNKETYVKNGKMITPRGYTL"
     gene            complement(11444..12475)
                     /gene="cbiG"
                     /locus_tag="U0280_000082"
     CDS             complement(11444..12475)
                     /gene="cbiG"
                     /locus_tag="U0280_000082"
                     /EC_number="3.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin 5A hydrolase"
                     /protein_id="HEM2270048.1"
                     /translation="MNTDKLAIIAVTERGRDLAITLTKTVAATIFVPGKHCNEQTNSL
                     TPDFGTAMREIFTKYQALICIMATGIAVRTLAPAIEDKLSDPAVLVMDEHGKFIISLL
                     SGHVGGANELTEQIAAITGGAAVITTATDRANVAAIDNIAKQLNGYLPDFKATTKRIN
                     GLLAAGKEVGLYIDEPLDIDTRGFTMEEVSPQVYISTKYKLQVATHERIQLVPKQFIL
                     GVGCRKGVSAETIAAAFTHFCEQENIHPRAFREIHSITLKAEEPAILHLAEKWRVPFI
                     VHPAEELQTVAGKYPTSAFVQKTVQVGNVALSSADIGSNGNVVTSRFAENGVTFAAGK
                     LTKNSEVAK"
     gene            complement(12462..13211)
                     /locus_tag="U0280_000083"
     CDS             complement(12462..13211)
                     /locus_tag="U0280_000083"
                     /EC_number="2.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-4 methyltransferase"
                     /protein_id="HEM2270049.1"
                     /translation="MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLE
                     YCKPDCEIHNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRS
                     IPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTS
                     MVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGI
                     TKTALIMVGDFLGEEFYYSKLYDKDFKHEYR"
     gene            complement(13217..13786)
                     /locus_tag="U0280_000084"
     CDS             complement(13217..13786)
                     /locus_tag="U0280_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating cobalt-precorrin-6B
                     (C(15))-methyltransferase"
                     /protein_id="HEM2270050.1"
                     /translation="MKDEVFIRGKVPMTKAEVRAASIDLLNLDDTSKKLLDVGAGTGS
                     VGLQVACNFPKIQVTAIERNPDAVDLIKQNQAKFGLENVTVIEAYAPIELPEKETFDA
                     IFIGGSGGNLTDIIDWSLAHLNPGGGLVLNFILLENALTAMNHLEKLTVSELTMKQIQ
                     VSSWHKLGAGHYFEPQNPTVIIGCKKLEE"
     gene            complement(13776..14372)
                     /locus_tag="U0280_000085"
     CDS             complement(13776..14372)
                     /locus_tag="U0280_000085"
                     /EC_number="2.1.1.289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-7 (C(5))-methyltransferase"
                     /protein_id="HEM2270051.1"
                     /translation="MITVVGIGPGDTNLVINEAKQVLSTAEIVYGSTRQLQEITELTT
                     ATPMLLPKKLADLKNIPHQNKNVVILASGDPLLYGIGNWALANFSEDVRIVPGISAIQ
                     MMFHRIQLPMNDCFITSSHGKTPNFDFLLQHEKVAMVTDTIIGPYEIAAEILQRGLKK
                     ILFIGENLSSKEERIHKLKPEQVAKKYDMNVVVIVDEG"
     gene            complement(14369..15490)
                     /locus_tag="U0280_000086"
     CDS             complement(14369..15490)
                     /locus_tag="U0280_000086"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HEM2270052.1"
                     /translation="MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQV
                     TTTGGTILEIPVAYQKFSKDKATAAVQKDGGDDIDATHGMWIFVDVDLTDNAEVVLDG
                     GVGIGRATQKGISVAVGEAAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKR
                     TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDD
                     FVQNTLGFSSGNIVSMSNFVGYMLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKD
                     ADARAEILVANLALLGAPLSLLQAVEKCNTTEAAGELIEEAGFTQVYDVIVQKIKARS
                     ERFLKFTKPSVEVDVVTFSTERGLLAATKDIDVLREEWR"
     gene            complement(15506..16138)
                     /locus_tag="U0280_000087"
     CDS             complement(15506..16138)
                     /locus_tag="U0280_000087"
                     /EC_number="5.4.99.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-8 methylmutase"
                     /protein_id="HEM2270053.1"
                     /translation="MNYIKNPAKIEEKSFEIIQQIINDIRPDYTFQNKLEEAIIKRAI
                     HTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCY
                     VSDPETMEIAKQHGITRSMAGIKLASLKDGPKLFVLGNAPTAVYKIIEMTESGELQAD
                     AVVAVPVGFVGAAECKEEILETDIPAIVARGRKGGSNLAAAIINAILITM"
     gene            complement(16151..17098)
                     /locus_tag="U0280_000088"
     CDS             complement(16151..17098)
                     /locus_tag="U0280_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HEM2270054.1"
                     /translation="MILLFYTSSFILDCLLGDPYSWPHPIKAIGNLIKWLTIILRKIF
                     HGKSLYFAGGLLFVLTVGMTGVVSWFILFLSAKIAYWLYIAVFVYLGYTTLAMTCLAK
                     EARKIQRTLADGDLAAARVQVGMIVGRDTDKLTAEEISKATIETVAENTADGVIAPLF
                     YLFIGGPVLALMYKAVNTLDSMVGYKNEKYRAIGFVSAKMDDIANFIPARLAWFFLVI
                     ASFILRYDGRASWQIGLRDRKNHTSPNCAYPEGAVAGALGITLGGTHEYFGETVIKPT
                     IGSGNKPVSEKEISQTIHLLYTASTIAFIIFASIYLLLF"
     gene            complement(17095..18453)
                     /locus_tag="U0280_000089"
     CDS             complement(17095..18453)
                     /locus_tag="U0280_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HEM2270055.1"
                     /translation="MNKILIAAASSGTGKTTITLGIMHALKKRGLRVQPFKVGPDYID
                     TNYHQAITGVASINLDSFLIDDDAMLATLFQKHGESADISVIEGVMGLFDGLGIDRDN
                     SSTSFIAKCTKTPVILVVDGKAISTSAAAIVDGFNRFDPELTIAGVIINRVASENHFS
                     LIKGAIERYTDVPVLGYLPKNAAVALPERHLGLVPKEEMTELETKWELLGDLIAEHVD
                     LDRLLAISKTGAKLTVHPPEIQVPDFSGVRVAYALDAAFHFYYQDNLDFIRSTGATLI
                     PFSPLEEREVPDADFIYIGGGFPEVFAEQLAKNKSMRESILAAHEQGKPIYAECGGLM
                     YLGSSLEMEAESYEMVGVFDGVSKMTTRLRKFGYCIAEPLEDTLLGKKGTAIRGHEFH
                     HSVFETTEPTRMKLTKKRDGKIVKEWHGGYQKGNTFASYLHIHFYQNLLIITHMFGAI
                     ER"
     regulatory      complement(18615..18792)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(18786..19280)
                     /locus_tag="U0280_000090"
     CDS             complement(18786..19280)
                     /locus_tag="U0280_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM2270056.1"
                     /translation="MKIQKLVLCAMLIAMCVIGANIKLMGSVAFDAAPAFIGTLLLGP
                     MYGAVLGIFGHLTSALLAGFPLTLPIHLIVAGMMGVTMIAYGFTRQKLAEKNQLVAVS
                     VSSIVAFVFNCPLSLLALYPLMHQAVFVLFPVLAIGSICNIFVAEVVYQVLPERWKRR
                     IAGY"
     gene            19594..20145
                     /locus_tag="U0280_000091"
     CDS             19594..20145
                     /locus_tag="U0280_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2270057.1"
                     /translation="MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLE
                     TVEVLDVLSDYYSAHEKQKQPRKETTSVNKTGKEHKEIKQAIRYIKKNIHRSITLEEV
                     ANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRA
                     SYFCKVFKKEFDMTPKEYRDSLK"
     gene            complement(20187..20630)
                     /locus_tag="U0280_000092"
     CDS             complement(20187..20630)
                     /locus_tag="U0280_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF861 domain-containing protein"
                     /protein_id="HEM2270058.1"
                     /translation="MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVS
                     EEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDTTFDWFLDYDEVDYIIEGRLD
                     VVIDGRTVSAGPGEIIFIPKGSQIKFSVTGEARFIYVTYPADWQS"
     gene            complement(20623..21744)
                     /gene="eutH"
                     /locus_tag="U0280_000093"
     CDS             complement(20623..21744)
                     /gene="eutH"
                     /locus_tag="U0280_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutH"
                     /protein_id="HEM2270059.1"
                     /translation="MSINEIIIYLMVIFMILGAIDKIIGNKFGLGAQFEEGIMAMGSL
                     TLAMVGIITLAPVLAKILSPIVVPIYTALGADPAMFATTLLANDMGGFALAQELALTP
                     DAGLFAGAILGSMMGPTIVFTIPVALGIIKKEDHKYLATGVLSGIITIPIGCLIGGLV
                     AGFSPIMIFKNLVPIILVAALIMLGLWFKPEGMIKGFTIFGKGVVIVATIGLVAGAIQ
                     QLTGLTIIPGIAPIGEGIEIVGGIALVLAGAFCLVFVITKVFNKPLMKMGKLLGMNEV
                     AAAGMVATLANSIPMFQMLKDMDERGKIINVAFAVSAAFVLGDHLGFTAGVAQDMIFP
                     MIVGKLVGGVTAVAVGIYMANRMMKKNKAKEQTAVKDNG"
     gene            complement(21760..22305)
                     /locus_tag="U0280_000094"
     CDS             complement(21760..22305)
                     /locus_tag="U0280_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2270060.1"
                     /translation="MAEQSLGILELRSISKGYEMADVFLKAGNVTLFTFRPTCPGKFL
                     IILQGASGELTSAMQDAKEEAGKFHVSSYILHMAHEELLAFLNNKHPKVEVDAVGIIE
                     ISQLGAGLNAVNEALKKSAIHLKRMTLGASIGGKFVAVFTGEVSAIQEGMRILIETAE
                     PKKVIHHTVIPSPDELLKRYL"
     gene            complement(22298..22567)
                     /locus_tag="U0280_000095"
     CDS             complement(22298..22567)
                     /locus_tag="U0280_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEM2270061.1"
                     /translation="MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAA
                     DNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVGIIDSVERYG"
     gene            complement(22582..23154)
                     /locus_tag="U0280_000096"
     CDS             complement(22582..23154)
                     /locus_tag="U0280_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02536 family ethanolamine utilization
                     protein"
                     /protein_id="HEM2270062.1"
                     /translation="MSMELDALIKAVTEEVMRRLQLPEKKMIIMGQDSEHTLRQCYLK
                     EYQVSLYDRSERACDILLLEELDIAELARISLFAPMNKKEQFITDHLLAGRPTWIMKS
                     GIKAHAYKRSAKYGIRQLFQEYEEKLSRFGVEFIESPVKETKESKVITEQDVEKLTKN
                     KSEFILPKGSFLTPLAKDYLQEKRISIKES"
     gene            complement(23151..23792)
                     /gene="pduL"
                     /locus_tag="U0280_000097"
     CDS             complement(23151..23792)
                     /gene="pduL"
                     /locus_tag="U0280_000097"
                     /EC_number="2.3.1.222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HEM2270063.1"
                     /translation="MNNELITSLIEEVTRRALLETGVEVEASGRHVHLDRETVDALFG
                     PGYELTHFRDLSQPGQYVCKERISIVGPKSVIHNVVILGPIRKKTQVEISSTDGTALG
                     IKAPVRESGDIAGTPGILLLSAKNSVQLSEGLIVAKRHIHMTPADAEKQQVSQSEIVQ
                     VKINGDRPLIFDDVVVRISPDFATYMHIDYDEANACGFKKGIRGQIIKKTKAK"
     gene            complement(23805..24560)
                     /locus_tag="U0280_000098"
     CDS             complement(23805..24560)
                     /locus_tag="U0280_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin adenosyltransferase"
                     /protein_id="HEM2270064.1"
                     /translation="MAILTEDELRKAYLHTDLKTTKKLDIKKGTIITPSAKSFLSEKK
                     IDLHYIDEIAETKVVVEPVKKETTRAKFQTIYGGALDEKPEHMTHLRGNLLVFKDHPQ
                     IAFRGKLDTLEAEILETQCSVAAEFKDLAEDLQEILTFVRNIVRSEVLNEQIESVHLL
                     GMDEKELRERSHNPKKYYQMTHFMPDYTMGNAVIRLNKIRTMVRETELAAFLAFKEAD
                     YSIKRPDIIQALNRLSSLFWILMFRVRTGEYKK"
     gene            complement(24726..25010)
                     /locus_tag="U0280_000099"
     CDS             complement(24726..25010)
                     /locus_tag="U0280_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2270065.1"
                     /translation="MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLV
                     TVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPRPHSEVDAILPKSAE"
     gene            complement(25042..26502)
                     /locus_tag="U0280_000100"
     CDS             complement(25042..26502)
                     /locus_tag="U0280_000100"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetaldehyde dehydrogenase (acetylating)"
                     /protein_id="HEM2270066.1"
                     /translation="MALEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIA
                     DAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYIKDMKTIGMLKEDNEKKV
                     MEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISE
                     AAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAYSSGTPAIGVG
                     PGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGA
                     HFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEETKVGA
                     KIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKK
                     PVSRLLVNTPGALGGIGATTNLVPALTLGCGAVGGSSSSDNIGPENLFNIRRIATGVL
                     ELEDIRKEENQATSELPVDADALIQSLVEKVLAELK"
     gene            complement(26502..27023)
                     /locus_tag="U0280_000101"
     CDS             complement(26502..27023)
                     /locus_tag="U0280_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2270067.1"
                     /translation="MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTT
                     VELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARMSEDTKALFVPQEEVKTQPKEVE
                     QEEPKEVIQQVVEVNTNTKSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKL
                     VHALKDIYGRSEN"
     gene            complement(27038..27691)
                     /gene="eutL"
                     /locus_tag="U0280_000102"
     CDS             complement(27038..27691)
                     /gene="eutL"
                     /locus_tag="U0280_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HEM2270068.1"
                     /translation="MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCD
                     DVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLSVA
                     VDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPPLEAMYA
                     LDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY"
     gene            complement(27714..28595)
                     /gene="eutC"
                     /locus_tag="U0280_000103"
     CDS             complement(27714..28595)
                     /gene="eutC"
                     /locus_tag="U0280_000103"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HEM2270069.1"
                     /translation="MNEQELKQMIEGILTEMSGGKTTDTVAAAPTKSVVETVITEGSI
                     PDITEVDIKKQLLVPEPADREGYLKMKQMTPARLGLWRAGPRYKTETILRFRADHAVA
                     QDSVFSYVSEDLVKEMNFIPVNTKCQDKDEYLTRPDLGREFDNEMVEVIRANTTKNAK
                     LQIVVGDGLSSAAIEANIKDILPSIKQGLKMYNLDFDNIIFVKHCRVPSMDQIGEITG
                     ADVVCLLVGERPGLVTAESMSAYIAYKPTIGMPEARRTVISNIHSGGTPPVEAGAYIA
                     ELIHNMLEKKCSGIDLK"
     gene            complement(28615..29979)
                     /locus_tag="U0280_000104"
     CDS             complement(28615..29979)
                     /locus_tag="U0280_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HEM2270070.1"
                     /translation="MILKTNLFGHTYQFKSITDVLAKANEEKSGDRLAGVAAESAEER
                     VAAKVVLSKMTLGDLRNNPVVPYETDEVTRIIQDQVNDRIHDSIKNWTVEELREWILD
                     HKTTDADIKRVARGLTSEIIAAVTKLMSNLDLIYGAKKIRVIAHANTTIGLPGTFSAR
                     LQPNHPTDDPDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEEFRSKWDV
                     PTQTCVLAHVKTQMEAMRRGAPTGLVFQSIAGSEKGNTAFGFDGATIEEARQLALQSG
                     AATGPNVMYFETGQGSELSSDAHFGVDQVTMEARCYGFAKKFDPFLVNTVVGFIGPEY
                     LYDSKQVIRAGLEDHFMGKLTGISMGCDVCYTNHMKADQNDVENLSVLLTAAGCNFIM
                     GIPHGDDVMLNYQTTGYHETATLRELFGLKPIKEFDQWMEKMGFSENGKLTSRAGDAS
                     IFLK"
     gene            complement(30021..31442)
                     /gene="eutA"
                     /locus_tag="U0280_000105"
     CDS             complement(30021..31442)
                     /gene="eutA"
                     /locus_tag="U0280_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase reactivating factor
                     EutA"
                     /protein_id="HEM2270071.1"
                     /translation="MTETILSVGIDLGTSTTQLILSELEIQNMASSFTVPRIVISDKR
                     IIFRSEILFTPILADNLIDVEAIRDFVTKEYANAGIKKEEIGMGAVIITGETARKDNA
                     SNVLDAMSGFAGDFVVATAGPDLESIIAGKGAGAHTYAKENNTSVVNLDIGGGTTNLS
                     LFDRGELIDTACLDIGGRLIKVDRETRKITYIAPKIQALIEKRGYPVKLGETTSPENL
                     QPVLGEMVELLKNSVGLGAPNDFYETIITNKGLKFLTEIECISFSGGVADCISTGALS
                     DPFRYGDIGLLLGKAIAESSLMTEKKYIESVETIRATVVGAGSHTAEISGSTITYTEK
                     IFPVKNIPILKLAKQEEDENMAEVIKEKLSWFKIENEMEHIALAIEGENSPSFQQVTE
                     YAKAICEGMKEPIALGHPLIIITWHDMAKALGQSIFGHLPAGHPLICLDSVKVDNGDY
                     IDIGKPVADGKVLPVVVKTLVFN"
     gene            complement(31532..32989)
                     /locus_tag="U0280_000106"
     CDS             complement(31532..32989)
                     /locus_tag="U0280_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2270072.1"
                     /translation="MTKTIREMCLRYTDLSEHDIEELIHTAKSLSVSAMYQDVDVFID
                     VYNKLTSEALVIHHTPPKTTKSLYKNKVVGETALRSNEPGVLRTLETGMNSNDLLAKT
                     QENVLIRQKVYPIRNKQRVIAVLILENDISAEIKAHFEIDNEETAYRDVSTTLSAMSK
                     LTDSITDQLDDAILIFDRNGILQQKNCAADQYYERLGYMEDIQGMHYDNLSLDQMMFD
                     AIMYQIETGKQPIQLKKEVVIAGNYFIMKQIFVKEEDEQECRFILILHDITDIKVKEA
                     EIVSKSVAIREIHHRVKNNLQSVVSLLRIQGRRSTSVEAQKILNESVSRILAIAATHE
                     LLSKQMEDGINLYMVIETVAYNIERCCTDCPKVAVRMDIDKRIYLDSDRTVALALVMN
                     ELLQNSYDHAFHPNESGEILLQIKEEKNIIHAEVTDNGHGFNVRKVSEKSLGLSIVKS
                     YIKDKLRGKVTIESNEHGTKTMFDFKYNSIHATKK"
     gene            complement(32982..33563)
                     /locus_tag="U0280_000107"
     CDS             complement(32982..33563)
                     /locus_tag="U0280_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing response regulator"
                     /protein_id="HEM2270073.1"
                     /translation="MTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIE
                     LCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGAL
                     GYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENN
                     ITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD"
     gene            complement(33838..34977)
                     /locus_tag="U0280_000108"
     CDS             complement(33838..34977)
                     /locus_tag="U0280_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM2270074.1"
                     /translation="MQKVSFKTDLYIGQGATDRLLDFKDKQIFIVTDPFMVSSGMINA
                     ITEKIDPSNTYTIFSEIIPDPPIENVVAGIEVLNECDANLMIAIGGGSAIDAAKAMKF
                     FGQKLGTVRAMPFIVIPTTSGTGSEVTSFSVITNKEKAIKYPLITDAILPDEAILDAD
                     LVKSVPPAITADTGMDVLTHALEAYVSTKANDYSDAMAEKVIQLVFTYLERAYKDGND
                     LEAREKMHNASCLAGMAFNITSLGLNHGIAHTAGAKFKIPHGRMNTLLLPHVISYNAG
                     ITSDFGNNPDNRAAERYTAIAKLLKMPASNTRLGVRSLINAIKQLQKKLNMPTTLTEC
                     GISRTDLNENIAQIAEGALNDGCTATNPRIPTETDVSAILEKMLA"
     regulatory      complement(35395..35538)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(35567..36442)
                     /locus_tag="U0280_000109"
     CDS             complement(35567..36442)
                     /locus_tag="U0280_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization protein"
                     /protein_id="HEM2270075.1"
                     /translation="MVIKARCPASCGELLQGWILGGEKLISYPINWYSEVTLSDKVGL
                     NNSGHTKAWLAFQTTCEYFGVAKRDLPQVSLQVKSTIPVAKGMASSTADIAATIGATA
                     KWLNKSISEAEIAKLCLQLEPTDSTIFESLTLFDHLRGDIIQSSNWMPKLGVVVLEPL
                     TILETATYRQENHQAQLLKNEGHLAKGMDYFQQAVTQKSIHLLGKAASVSAACNQTIL
                     PKPFWREIVEVTENLDLVGLNVSHSGTVVGILYELEKTDPLEILFELERRYVTTFYSR
                     YYFREFVSGGVQIIS"
     gene            complement(36432..37517)
                     /locus_tag="U0280_000110"
     CDS             complement(36432..37517)
                     /locus_tag="U0280_000110"
                     /EC_number="4.1.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-phosphate decarboxylase"
                     /protein_id="HEM2270076.1"
                     /translation="MKITTASHGGNYNELAKQHGLTKEMVLDFSANINPLGVPASLKQ
                     TITTNLDKLVEYPEPDYLALRARIASFHQLDLANVIPGNGATELIFGIAKVTKAQKVL
                     LLAPTFAEYERAFFDAEIVYAELTKETNFAAAQIVLEMLEQDTDIEAVCLCNPNNPTG
                     QLIAQQEMIKIADLCEKRNIYLIIDEAFMDFLEENETISMINYLEKFPHLAIIRAFTK
                     FFAIPGLRLGYLLTKNDLLAEALMQMREPWSINTFADLAGQMLLEDEAYIRQTFDWIN
                     AERDFLYRGLSKFSALTVYRPSVNYIFFHLEKPFDLRKKLLLKGIFIRSCANYRGLTE
                     NYYRVAVKSREDNRQLLTALEVIFSGN"
     gene            complement(37531..38724)
                     /locus_tag="U0280_000111"
     CDS             complement(37531..38724)
                     /locus_tag="U0280_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM2270077.1"
                     /translation="MHKIMAINAGSSSLKFQIFTMPGEEVLVKGLIERIGLPDAIFNM
                     SFQNEKIKEIRAINNHGEAVEILLEQLKAHQVINDLSEITGVGHRVAHGGEDFVTSCV
                     VTDEVVKGIEAVTNLAPLHNPANIIGIKTFRELLPNAVSVAVFDTAFHQTIPEENFLY
                     ALPYELYEKHHIRKYGFHGTSHKYVAGKAAEVLEKPLEKLKIISCHLGNGASVCAIEA
                     GKSVNTSMGFTPNAGLMMGTRSGTIDATIIPYLVDELGYSLDEVMHMMSSESGVLGVS
                     GISSDFRDIEIAAKEGNSRALLTLRMFTGQICNYIGAYASAMNGCDALLFTAGVGENS
                     PLIRQMVTEQLSYLGVTCHVTKNNAGDMIISNDDEAVKVCIIPTNEELMIARDVEKYA
                     KQTIS"
     gene            complement(38790..39494)
                     /locus_tag="U0280_000112"
     CDS             complement(38790..39494)
                     /locus_tag="U0280_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM2270078.1"
                     /translation="MSAYLAEFIGTMVLIMFGNGLLAGLTLNKSLSQGANWVVVTFGW
                     GFAVMIGIYVAGAYSGAHLNPAVTIALAVGGSFPWADVVPYIIAQIAGAFVGASIVIL
                     HYYPHFKATPPEIDTHGIFSTGPAIRNTPFNLISEIIATFAFIFGLLMIGANSFTDGL
                     NPLILGFLVVAIGMSFGPTTGYAINPARDLGPRLAYFLLPVPNKSGSDWRYAWIPIVG
                     PIIGGLLAIGLFNILL"
     gene            complement(39522..40640)
                     /locus_tag="U0280_000113"
     CDS             complement(39522..40640)
                     /locus_tag="U0280_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM2270079.1"
                     /translation="MNSFQIKTKVAFGTNSLQVLKEIKNKNVWIICDRFLADGEGLQG
                     LIGQLDTSNNVHIFTDVVPDPPISKVAGGVSEAGKIQPQVMIAFGGGSAIDTAKGIYY
                     FAKRLEKINISTFIAIPTTSGTGSEVTAATVITDPTTKIKYPLFLDELIPDMAILDAQ
                     LVVTVPPAITANTGMDVLTHAIEAYVSKDASDYTDALGEKSVQLTLRFLTSCYDDGRN
                     LANREKMHNASTMAGMAFNCANLGLNHSIAHQLGAQFHVPHGLANAILLDAVIRFNAF
                     KNRETEQKYAEMARICGIASRSDSNETAVRLLRERIVAMMEHMQMPRTLTDAGVAKEK
                     VYAKMDEIATNALKDACLPTSPTTPSHQELKEILEQII"
     gene            complement(40656..42065)
                     /locus_tag="U0280_000114"
     CDS             complement(40656..42065)
                     /locus_tag="U0280_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HEM2270080.1"
                     /translation="MESLELEQLVKKVLLEKLAEQKDAPVKTTVKGAKSGVFDTVDEA
                     VQAAVIAQNNYKEKSLEERRNVVKAIREALYPEIESIAARAVAETGMGNVADKILKNT
                     LAIEKTPGVEDLYTEVATGDNGMTLYELSPYGVIGAVAPSTNPTETLICNTIGMLAAG
                     NAVFYSPHPGAKNISLWLIEKLNTIVRESCGIDNLVVTVEKPSIQAAQEMMNHPKVPL
                     LVITGGPGVVLQAMQSGKKVIGAGAGNPPSIVDETANIEKAAADIVDGASFDHNILCI
                     AEKSIVAVDSIADFLMFQMEKNGALHVTNPSDIQKLEKVAVTDKGVTNKKLVGKSASE
                     ILKEAGIVCDFSPRLIIVETEKTHPFATVELLMPIVPVVRVPNFDEALDVAIELEQGL
                     HHTATMHSQNISRLNKAARDMQTSIFVKNGPSFAGLGFRGEGSTTFTIATPTGEGTTT
                     ARHFARRRRCVLTDGFSIR"
     gene            complement(42072..43067)
                     /locus_tag="U0280_000115"
     CDS             complement(42072..43067)
                     /locus_tag="U0280_000115"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEM2270081.1"
                     /translation="MSIYTKTGDKGTTALFDGNRVKKYDDRVETYGSFDELNAEISVA
                     EKFVTSAENKTLLRNVERQLFYVCAELATEHEASLASKIIITENDINQLEKVIDDYTA
                     KLPKVDSFVLPGSSTAGAFLHSARTVARRGERLLVRLSEQTAIRKELLKFVNRLSDFL
                     YILAREEDFRQMLDKATKLIVAKYLEQTGQEKSVTSDLSFSFCEKLMHQVCIVSEEIG
                     VPVTLAIVDAHGNARFNYRMEHALLVSAELATKKAYSAVAMKTSTEKLTEAVQPGAPL
                     YQLETLTNGDIVTFGGGVPIYGKDGAIIGGMGISGGSVEEDIHIAKKALSMIEKG"
     gene            complement(43082..43345)
                     /locus_tag="U0280_000116"
     CDS             complement(43082..43345)
                     /locus_tag="U0280_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEM2270082.1"
                     /translation="MFMAKITGSVVSTKKEDSLTGKKLMIVQPVDANGEHVRSEEVAC
                     DSVGAGIGEYVLVARGNAARSVFAEPNSAIDSAIIAIVDSFDK"
     gene            complement(43350..43829)
                     /gene="pduM"
                     /locus_tag="U0280_000117"
     CDS             complement(43350..43829)
                     /gene="pduM"
                     /locus_tag="U0280_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PduM family microcompartment protein"
                     /protein_id="HEM2270083.1"
                     /translation="MIEKLVKIIVQRLKLRATNKTSIAISKLPRDPVAIFIESGTIRL
                     TQVNKHFLERILSGNRAESLTAWFEKATDYGVTIELELYDNGEPWLDYTMLSQLEFPV
                     FTNKGERLFHSNGQVICYGDSAVIPSGSTLCKYKKQLITPLANEYLTKNNIAVRERQ"
     gene            complement(43826..44665)
                     /gene="eutJ"
                     /locus_tag="U0280_000118"
     CDS             complement(43826..44665)
                     /gene="eutJ"
                     /locus_tag="U0280_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HEM2270084.1"
                     /translation="MDILQTANERMEQLAALMNKDIKQKVSADQKVKVGVDLGTSSIV
                     FVVLDEHDVPLFGAFEFADAVRDGLVVNYRESVEVVTRLKERAEKCLGITLTHASGAI
                     PPGTVGNNKKVVANVIESAGMEALYTIDEPTAAAAVLGLQDGAVVDVGGGTTGISVFE
                     NGEVIYTADEPTGGTHMTLVLAGYYGVPVEKAEQNKREQKDSSEHFSVMRPVVEKMAE
                     ITRVHLEKSPSEPLYIVGGASAYSQFKDTFESYLKTPVFQPNYPQYVTPLGIAMSSGS
                     ENL"
     gene            complement(44686..45321)
                     /gene="pduL"
                     /locus_tag="U0280_000119"
     CDS             complement(44686..45321)
                     /gene="pduL"
                     /locus_tag="U0280_000119"
                     /EC_number="2.3.1.222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HEM2270085.1"
                     /translation="MEREELKAIIKQIVTDKLSGVETEIPIGVSNRHIHLTENDYNQL
                     FPNEPIQVKKWLKQPGEFAAEQTLTVVSEKGELHRVRILGPLRKFSQVELSKTDARML
                     GMKIPIRVSGDIDGTPGIKLVSKHSEICLPKGAIVAKRHIHLPESVAHEYGVKQGDEV
                     SVLVGSEMRSLVLNHCTIRVNNQFIPEMHIDTDEANAADIAGTCFAKIIKS"
     gene            complement(45325..45600)
                     /gene="pduA"
                     /locus_tag="U0280_000120"
     CDS             complement(45325..45600)
                     /gene="pduA"
                     /locus_tag="U0280_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HEM2270086.1"
                     /translation="MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGSGLVTV
                     MVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLPKGL"
     gene            complement(45625..46062)
                     /locus_tag="U0280_000121"
     CDS             complement(45625..46062)
                     /locus_tag="U0280_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2270087.1"
                     /translation="MHQAIGMIEIKGLASAITVADTMAKVANIQLVDTEKAKGFGWIT
                     VKVEGDVAAVNAALEAGEQTAIASDSFIAKKVIPRPGEEIFTVFWPKEEIEPEQPEVM
                     VETEKVEETEVPAEATCNLCHDPLCPRVKGDPRQDCIHFEEEK"
     gene            complement(46075..46422)
                     /locus_tag="U0280_000122"
     CDS             complement(46075..46422)
                     /locus_tag="U0280_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol dehydratase reactivase beta/small
                     subunit family protein"
                     /protein_id="HEM2270088.1"
                     /translation="MIPVVSKPAIYFHADVDANPDSIKQVLFGIEEEGIPCELEIMSL
                     KDEVQAAFRASASSPLLVGVTLKNDHLVIHYRNLPPDKPLFSAYRFCATTLENQRNMG
                     MNAARLVKGVPFK"
     gene            complement(46419..48239)
                     /locus_tag="U0280_000123"
     CDS             complement(46419..48239)
                     /locus_tag="U0280_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diol dehydratase reactivase subunit alpha"
                     /protein_id="HEM2270089.1"
                     /translation="MKYIAGIDIGNSTTEVALAMANSSKEAAFVASAITDTTGIKGTK
                     QNLHGIFKALRLALEKVNATTENLAEIRINEATPVIGDVAMETITETIITESTMIGHN
                     PKTPGGLGMGSGVTVLLDDVTSKSKDEDYIVIIPKTVDFEDAAKQINTYVENGYQITA
                     AILQADDGVLVHNRLNHKIPIVDEVGFIDKVPVDMLAAVEVAAPGKVIETISNPYGIA
                     TVFHLNSDETKNIIPVARALIGNRSAVVIKTPEGDVKARTIPAGHIELQSGSRTQRVN
                     VAEGSEKIMQAIMSLPKLDNASGEPGTNIGGMLEKVRQTMAGLTDKLPADIFIQDLLA
                     VDTFVPVDVQGGLAGEFSMEQAVGIASMVKSDHLQMAAIASEIEQELQVSVKIGGAEA
                     EAAILGALTTPGTNTPLAILDLGAGSTDASIINGKGEIIATHLAGAGDMVTMIIQSEI
                     GLEDRYLAEDIKKYPLAKVESIFHIRHEDGTVQFFDTPLSPTVFAKVVIVKQDGFVPI
                     PGDVSIEKIKLIRRSAKERVFVTNTIRALKYVSPTGNIRDIPFVVIVGGSALDFEIPQ
                     LITDALSHYSLVAGRGNIRGKEGPRNAVATGLILAGGAKA"
     gene            complement(48285..48797)
                     /locus_tag="U0280_000124"
     CDS             complement(48285..48797)
                     /locus_tag="U0280_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diol dehydratase small subunit"
                     /protein_id="HEM2270090.1"
                     /translation="MNQEALENMVRNILQEVNSGAVSTTTSQKVSGDTLTVRDYPLGT
                     KRPELVKTSTSKSLDDITLKSVLDGTIKPEDVRVTAETLKMQAQVARDAGRATLANNF
                     ERAAELTIVPDERILEIYNAMRPYRSSREELLAIADELESVYHATICSNYVREAAQLY
                     QERKKLKGDN"
     gene            complement(48814..49473)
                     /locus_tag="U0280_000125"
     CDS             complement(48814..49473)
                     /locus_tag="U0280_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol/glycerol family dehydratase medium
                     subunit"
                     /protein_id="HEM2270091.1"
                     /translation="MVEINEKVLRGIISEVLDELQLKEDKVSFQKEQPSVAVSDESFL
                     TEVGDAEPGRQKDEVVIAVAPAFGKYQTKNIVGVPHKQILREVIAGIEEEGLKARVVR
                     VFRSSDVAFVAVEGDKLSGSGICIGIQSRGTALIHQKDLQPLSNLELFPQAPLITLET
                     YRAIGKNAAKYAKGESPNPVPMVNDQMARPKFQAKAALLHIKETKHVVQGKNAVELQV
                     N"
     gene            complement(49511..51175)
                     /locus_tag="U0280_000126"
     CDS             complement(49511..51175)
                     /locus_tag="U0280_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol/glycerol family dehydratase large
                     subunit"
                     /protein_id="HEM2270092.1"
                     /translation="MKSKRFEELAKRPVNQDGFVKEWIEEGLIAMESPNDPKPSIKIE
                     NGKVVEMDSKKLADFDLIDHFIAKYGVDLSRAEEVMQMDSVKLANMLCDPNVPREKIV
                     LLTTAMTPAKIVEVVSQMNVVEMMMSMQKMRSRRTPTTQAHVTNLRDNPVQIAADAAE
                     AAIRGFDEQETTVAVVRYAPFNALSLLVGSQTGRGGVLTQCSLEEATELELGMRGLTC
                     YAETISVYGTEPVFTDGDDTPWSKGILASAYASRGLKMRFTSGTGSEVQMGYAEGKSM
                     LYLESRCIFITKAAGVQGLQNGSISCIGIPGAVPSGIRAVLAENLIAVMLDLEVASGN
                     DQTFSHSDIRRTARLLMQFLPGTDYISSGYSATPNYDNMFAGSNFDADDFDDYNILQR
                     DLKVDGGLTPVTEEEVVAVRNKAARVIQAVFDKLGLPEVTDAEVEAATYARGSKDMPE
                     RNMVEDIKAAAEMMDRGVTGLDVVKALSAGGFDDVAESVLNMLKQRVSGDFLHTSAII
                     DKDWNVISSVNDLNDYAGPGTGYRLEGERWEKLKDIAVAVDANELE"
     gene            complement(51194..51997)
                     /gene="pduB"
                     /locus_tag="U0280_000127"
     CDS             complement(51194..51997)
                     /gene="pduB"
                     /locus_tag="U0280_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduB"
                     /protein_id="HEM2270093.1"
                     /translation="MSEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTE
                     FVGRAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATN
                     TEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHI
                     ELQYTARASHALNTAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPAD
                     GTSFSNEVILCISGDSGAVRQAVISAREIGKKLLGALGDEPKNDRPSYI"
     gene            complement(51990..52277)
                     /gene="pduA"
                     /locus_tag="U0280_000128"
     CDS             complement(51990..52277)
                     /gene="pduA"
                     /locus_tag="U0280_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HEM2270094.1"
                     /translation="MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTV
                     MVRGDVGAVKAATEAGAAAARNVGTVMSTHVIPRPHTDVEEILPVRVKSDE"
     gene            52580..53464
                     /locus_tag="U0280_000129"
     CDS             52580..53464
                     /locus_tag="U0280_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PocR ligand-binding domain-containing protein"
                     /protein_id="HEM2270095.1"
                     /translation="MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFT
                     PFCQLIRSNPKYRSLCQKCDMFGGLEASKTGKPLIYRCHAGLTDFSVPIVVENQLSGF
                     LLSGQVICEESSEVGNIQAEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQY
                     YLKSEMEKSREEQKQKIVFHHAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVY
                     LSSYYFSKLFKKEMNVNFINYVNQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCK
                     VFRKEFEVTPKGYRETLK"
     regulatory      complement(53618..53808)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(53874..54449)
                     /gene="cobC"
                     /locus_tag="U0280_000130"
     CDS             complement(53874..54449)
                     /gene="cobC"
                     /locus_tag="U0280_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ribazole phosphatase"
                     /protein_id="HEM2270096.1"
                     /translation="MQLIFVRHGETDWNVAKKYCGQLDVALNENGIRQMEQLREKLEN
                     YSIDLVVTSDLMRVKQSANILSNAKTLRFPALNEMNFGDFEGYTYQEISTKFPKAWNE
                     YCNNWQTALFSNGESFPIFYERVVAILEEEMEKWQQLDTVLLVGHLGVLRVIALFLQK
                     QTIAQYWDIDFKQGCYSLWDNKSQHFLISNQ"
     gene            complement(54450..55196)
                     /gene="cobS"
                     /locus_tag="U0280_000131"
     CDS             complement(54450..55196)
                     /gene="cobS"
                     /locus_tag="U0280_000131"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEM2270097.1"
                     /translation="MKTLILLIQFFTRIPLPVQINMDEINLKKGSALLPFVGVIIGAW
                     NWLIFTLVALLMPLPVAIIAGLFAEIIITGGFHVDALADTADGLFSSRKRERMLEIMK
                     DSRVGANGVIAICFYFLFYGSLFLSVPDTQQIGWLFFVLPIVAKGVTMLLFAKMTYAG
                     SKEGLGSIFLGVPWWPVVIAQVIVLVALGAFFSYIGVIAYAGVILFTIIYRAFVYKRI
                     GGMNGDTLGAGGQMGQLICLFCLVLLWGLI"
     gene            complement(55198..55755)
                     /gene="cobU"
                     /locus_tag="U0280_000132"
     CDS             complement(55198..55755)
                     /gene="cobU"
                     /locus_tag="U0280_000132"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HEM2270098.1"
                     /translation="MSEMMLVTGGARSGKSSFAEKEATKYNRVLYVATGIAFQNDTEF
                     QARIKKHQATRPEHWDTFEAFKGIAAYLERNGNKYDVIMLDCVTMLVTNLFFSLLGER
                     ELTNEIADEVEAGIQSEVRAILKAGEQSSAKFIFVTNEIGLGVVPENKLTRVFRDIIG
                     RINQQIATEVEEVYFVVSGIPKRWK"
     gene            complement(55748..56491)
                     /locus_tag="U0280_000133"
     CDS             complement(55748..56491)
                     /locus_tag="U0280_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEM2270099.1"
                     /translation="MPQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTAR
                     LTLRVALLEMLASGAVVVAVSDVIGAEMEPTGKRVIAGLKDELIKADLGHIELNGSTE
                     ENMNVTQTSVGVLVTGFATKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHL
                     VKKLVEHSDVLEVVPVGSKGMAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVIL
                     VAVKASEVKAFEQNFPAAKCLGELRNYHE"
     gene            complement(56516..56947)
                     /locus_tag="U0280_000134"
     CDS             complement(56516..56947)
                     /locus_tag="U0280_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutP/PduV family microcompartment system
                     protein"
                     /protein_id="HEM2270100.1"
                     /translation="MKKMMVMGSVGCGKTTLCQKLHGYDILYKKTQAVEYFQEMIDTP
                     GEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFSPMFASIFAKPVIGIVTKVDLA
                     ESEKDIERAERELRMAGAKHIFYISSLEETGIEELRAYLED"
     gene            complement(56953..57303)
                     /gene="eutS"
                     /locus_tag="U0280_000135"
     CDS             complement(56953..57303)
                     /gene="eutS"
                     /locus_tag="U0280_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HEM2270101.1"
                     /translation="MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEGAS
                     AIGILTITPSEASIIASDIATKSGDVRIGFIDRFSGSVVLTGDVSSVESALQQVVYSL
                     HEILDFSIPKITRS"
     gene            complement(57451..58005)
                     /locus_tag="U0280_000136"
     CDS             complement(57451..58005)
                     /locus_tag="U0280_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2270102.1"
                     /translation="MKMDTLGFLELNSISKGIEAVDTMLKAANSELIYAKASCPGKYY
                     ILIAGTVDSVAQSIEAGTKIGAANIVGNLVIPRVSDQVIKAINKTEVPDEMNAVGVME
                     YYSCSGSIIAADAAVKAADVQLMDIRLATGIAGKSFVVLTGDTAACEAAVEAGLAAAK
                     EEALLINKVVIPRPRKEVFESLIY"
     gene            complement(58002..59366)
                     /locus_tag="U0280_000137"
     CDS             complement(58002..59366)
                     /locus_tag="U0280_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEM2270103.1"
                     /translation="MSQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECE
                     PLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS
                     VTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAP
                     VVRKQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKST
                     IAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGH
                     DIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGLSPRQVNIHVKK
                     ELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVF
                     IPTKMHIGAPSIPVVSEGDIVKKGDLIAKIPDASLGANIHASIDGQIIRITEEQVHIK
                     KVMS"
     gene            complement(59485..59964)
                     /locus_tag="U0280_000138"
     CDS             complement(59485..59964)
                     /locus_tag="U0280_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HEM2270104.1"
                     /translation="MKYPIMLDITGKRVVIIGGGKVALRKVKGLLHTGADILIVGLDV
                     LPEIKELQVQVKEEAYRAEHLIGAFLIFICTNNPEVNQMVLKDRLPEQLVNDTTEQKN
                     SDFFNMATVSKNELLVGISTGGGNPGYAKKVKREVRQLVENLETEEIGKRNKNDKTC"
     gene            60056..60463
                     /locus_tag="U0280_000139"
     CDS             60056..60463
                     /locus_tag="U0280_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2270105.1"
                     /translation="MFNQAKRISTFFTFNGNGEEAFNFYLDTFPDAKKIGLTYFTKPE
                     QGGDIGKVLNATFEIKGASFMIMDMTNNASPDFSWATTTLYFADTEDEFDTLFEKLAK
                     EGTVMMGPEAVEALRKVAWVTDKYGITWQLAFV"
     gene            60594..61166
                     /locus_tag="U0280_000140"
     CDS             60594..61166
                     /locus_tag="U0280_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEM2270106.1"
                     /translation="MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLL
                     LESISNDPITIFINSQGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEK
                     ENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISK
                     DTDRNFWLSVNEAKDYGIVNEIIENRDGLK"
     gene            61231..61578
                     /locus_tag="U0280_000141"
     CDS             61231..61578
                     /locus_tag="U0280_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270107.1"
                     /translation="MKLTKENFQKLDQIHLSLENRHSMSEIIAILSESYIEITQNGVV
                     KDFSYYKSLTTLGNSSLEIMDYDIKILDETKVLSYYKLKNTSENSYTMRSNVWIIENG
                     SWKLTFHQGTKIV"
     gene            complement(61613..63148)
                     /locus_tag="U0280_000142"
     CDS             complement(61613..63148)
                     /locus_tag="U0280_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2270108.1"
                     /translation="MKKTIKITTSLLLSFACVFSIGDFTKPHTVEAETVYSLTDSKPI
                     NEIFPDPKLAQVVANWLKLPSATSPVTQNQLNTVKSLHFDSKGVQSLEGVEYLKNLTQ
                     VFGYGNQVSDLGPLSNLTQLEIIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPI
                     KNLTNMLELNVSANPISDISAVKNMTQLEFLTIRDCEVSDLSPVENLSNMLMFWAGRN
                     NISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTL
                     ETLTLSFNQIIDISSLKNLTNLTRLELANQTRVLDAVEVDDPLILPAPVIDENGSRVQ
                     PTKVSHAGIYANGEITWEGLQSNYILNYEYNLPVAIGSLTTTYSGKITQPLLEKPVNP
                     ITPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVTPVNPSNQVNPI
                     DPVKSVLQVTETLMKQTTSVNTIVAKDNRNLPKTGDSGMHSSLVSGLMLAVSSVILLR
                     KRK"
     gene            complement(63428..63718)
                     /locus_tag="U0280_000143"
     CDS             complement(63428..63718)
                     /locus_tag="U0280_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270109.1"
                     /translation="MSKERCACCNCLTIDVRGEFEICPICFWEDEGYFVFDKEEIYSH
                     YQDIFSIEDLLNIRSSANNGLTLLDARQNFKLFGACELAMKKYVREPNAEEL"
     gene            complement(63715..64185)
                     /locus_tag="U0280_000144"
     CDS             complement(63715..64185)
                     /locus_tag="U0280_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2270110.1"
                     /translation="MEITLQQPTSADFSFIEWLWGDLATTEVLGGPFSFPEEMRMDWL
                     KSKSQASNAYFIIKKGIESVGEVSFRDFEKGTAHLNIKVAACYRGQRIAQKALQLFLD
                     FFQTDCGGIVMLDEVRRKNEAGIGFLVKAGFEVIEEKEWTMVLKWSAQAEGGFE"
     gene            complement(64305..65444)
                     /locus_tag="U0280_000145"
     CDS             complement(64305..65444)
                     /locus_tag="U0280_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 26/phosphotriesterase HocA family
                     protein"
                     /protein_id="HEM2270111.1"
                     /translation="MINNEIREVIGLHQINENDQKLTVENAEVIIRNHVLIKLILNQA
                     DCYKEIDYNLELTDTNELVGRKNAKPKALTTKTILKAKTKELRLKINKISHRIELKLG
                     VQHFENIYFEEGMLFTKENVQEKIAANYGSDWLSILDKAKLKVKTRQTIQQGSIFSYP
                     IGNEYGFGLVIGCFQAFRKQKIMPQDSSHYLRLMMGVPLVIRSFNYTSKQNTVDLSLL
                     KKQELLNPEFIMDDLVSRGDFPIIGRVDLEEADISFPMNFSFNGVSTTYAGYQAIGEP
                     DRDIIKKYEEEITVRFDWGFGSKTMPAKEFLKRSSGKESFLPYSGLGMTPIAGYSKKL
                     VSPKSIFSEEELKQIYAVLDINGEMSFDDFNENYNGLTAQNILSI"
     gene            complement(65469..65815)
                     /locus_tag="U0280_000146"
                     /pseudo
     CDS             complement(65469..65815)
                     /locus_tag="U0280_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
BASE COUNT        18518 a        14424 c        11533 g        21347 t
ORIGIN      
        1 tttaccatat agtgcaacaa gaataagaaa aataataaag atgaatgtag taattccaat
       61 attgttttcc atttgaaaca cgattaacaa ttcaataagt aaaaacaaac tcactatcgc
      121 accaaaaatc gtccaacgtt tgcggatatt tttgtaaagt tgaattaggg aagtctcgtc
      181 agtgaaaata gcttcctctg tttctccagg agctacagct ttgcggaaat acatccaatt
      241 gccatttaat actggatagc taaaaacagt ctcccagcca gcatcttcga aaagtgtttt
      301 gtaggcatct tcgtctcctt cattttcttt gaaatcaatc gcatagctgt atttcgcagg
      361 ctctccctgt ttgaaatgat atctaaaaga tttatatttt tgaaagaacc aaccattttg
      421 tgccatttca tttaaatagg cttcttcttt ctccatattg tccacggtaa aaaacttaac
      481 gacttttttc tccattatta gacctccctt gagtttctat acaattcttc gatgcgcgct
      541 ttttctaatt gcaaaatatc tgtgccaatt tcagtaattt gatagatttt ccgattactc
      601 tcttcttgaa taatttggat caaattatct ttgttcattt tggataagct tccgtaaata
      661 gtcccgggac caagcttgat tcgatcatct gtcatctttg cgacgttttc gataatcgcg
      721 taaccgtgcc ttggtttgac gagcgatagt aatatgtaaa aagcggtttc ggtcattgga
      781 agataggctt tccgtaattt ttcattcata actatatcgc acctcgatgt atttgatgct
      841 tataatatat cacggctcga tataatttgc aataccccat tttttatttc ttgaaatacc
      901 gttttttctt tgataattag ccattttgtt ggattttggg ccatttttct agcaattagt
      961 ggttttgttc gttggtcaaa taaatcgtcc caataaaaca ttttctttaa catgttgaac
     1021 cgaattgggt aatgagctgc ttctaatcgt attaattgtt taatttggcg cttaataatt
     1081 tgggagcgga tttgtttttt aggtaaatca agaaaaataa ccacgtccgc ttggttaatg
     1141 ctctcgtcca cccatgcttc caaatgaacg ccttcaataa tccagttttc ttgttgaaga
     1201 atcttattta atacagctat tttttcattg tcggttcgtc ttacctctgt ttcttctcgt
     1261 ttccagacaa tgcgatctgt ttcaaaataa tcgatttgtt gccactcgga aagctttttt
     1321 gctagagtgg ttttgccgct tccgacggat ccgataatac gaattttcat aaaaaaacct
     1381 cgctttaaat taattactat ctttttaccc cgcttttatt ttataattat ctcattgtga
     1441 taaaagggag ggaaattttt gattatatta tttattgtat caggtttgtt agctgggatg
     1501 gtattaccag ttcaaacggc catcaatacg cgacttagta catatacgaa atcaccgttt
     1561 ttagcttcgt gggtttcttt tatggtaggg acaactgttt tacttatcgt ttgtttattt
     1621 acacaaaaat catggccaat atcttcagaa atgattgcct caaatccttg gtatatctgg
     1681 gttggtggtg gaacattagg cgttattttc ttaacggcca atattttact tttacctcga
     1741 cttggttcgg cacttcttgt gatgattacg gtttgtggac aaatgattat ggcgattatt
     1801 attgataact ttggtttatt tcaagtacca atgcatgaga ttaatatcga acgtctactt
     1861 ggcgttatct taatgttcgg cggcatttac ttgatgcaac gcttttaaaa ggaggagaaa
     1921 acatgacaaa aagatcatcc aaatcattat tactatttat ggcaatggga cttgtttctg
     1981 gactactttc cccgattcaa acgtcgatta atagccaact tcggctcact gtcggttctc
     2041 cttttgtggc atcatttatt tcctttttag ttgggacaac gttacttacg cttgtttgtt
     2101 taattgtcga gcgtcgtttg acttttcaac tgaaaggtgt cggccgaatt ccttggtggg
     2161 ttttcactgg cggtgcgctt ggagtgctct tcgtaacttc taacatttta cttttaccat
     2221 tactcggctc agcaatgacg gttgttttag cgctttgtgg gcaaatgatt attgcactta
     2281 ttattgatca ttttggtttt ttcggggtta ttcctcatcc aattaaccgt tatcgtatga
     2341 ttggtgtttt attaatgctt gttggtgtat ttttaattca acgtttttaa aaaaggaaaa
     2401 cctctccggc tttgatgtct ggagaggttt tttattattt ctttttattg cggaaaacga
     2461 gttcggaatt tttgtaaaaa atgtctgttt caccagcgcg gtaattgacg actctggcaa
     2521 cggcaaaaaa gtaatccgat aaacggttga cgtattttaa tacttcttcg ttacttgaag
     2581 caatttttaa cataccgacg atttcgcgtt cagctcttct tgttacggtt ctagccatgt
     2641 gcagtaatga ggctgcttgc gttccacctg gtaggataaa tttttctatt tctgggggtt
     2701 catcggcgta gatgtcaatt cggtcttcta gccacgcaac aggctcactt gttaatttat
     2761 acgcacgctt gccttcttcg gttgcaagat cccctcctgc atcaaataat tgctgttgaa
     2821 tttgttcgag ttcggcttga atttctggtt cagccccaag tgttgttatc gtgtagccaa
     2881 tcagcgaatt aagttcatcc aaagttccat atgcatcgat acggatatta tctttactta
     2941 ctttgctacc cccgataatt cttgtcattc ctttatcgcc ggtttttgtg tagatacgca
     3001 tattttttct cctttcatga ttttttctag ttggtccatt tgaatatttg cttctaaaag
     3061 ggccgctagt ttgtcgtatt cttgttcttt gtgttctttc agattaatga tttcatgcgg
     3121 ataaacggat ttgtttttac ctgttagtag ttcgtcaaat agatttccta agaaaacatc
     3181 attgtcgaaa ataccatgaa tatatgtgcc gatgatattt ttgttgacag agatagcgcc
     3241 atcttggtgg gtttcttcgt ttccgttcac cgctttaatt tcgcaaaatg gactagtgct
     3301 ctcgcctcgc ttcgtctcac ccatatggat ttcgtaacct tcaactgctt cacctgaatg
     3361 cgtcacacct gtaatttgag tagtgcgttt ttggtcgaga aaaatggtct cggtatctag
     3421 caaaccaagt ccggctattt ctaattgttt actctccact tgattcggat cgagcatttt
     3481 tttaccgagc atttggtagc caccacaaat cccgattact tttccggcat ttttagcata
     3541 gttttgaatg gcatttttaa gtccagattc ttcgaggaaa gccatatctt ctagtgtatt
     3601 tttacttcca ggaataatga ctaaatctgg gtttccaaaa tcagctatat tacggatgta
     3661 gcgtacactt atgtcgggct ggatttccag aatatgaaaa tctgtgaaat tagaaatcct
     3721 cggtaaacaa ataatcgcga tatcaagtag tgcgttacta tccggcacgt aatttttccc
     3781 acttagagaa acgctgtcct cttcttccag ttgtagattg gcataaggaa tcacaccgat
     3841 aaccgggaca tttgtgagtt cctcaatcat atcaattccg ggttgtaaaa gagctacatc
     3901 gccacggaat ttattgataa taacaccttt gattcgagcc cgctcttctt catttaacag
     3961 cataatggtg ccgtatatcg aagcaaaaac gccacctttg tcaatatcag caactaagac
     4021 aactggggca tcgaccattt ttgccatgcc catattcacg atatctcggt cgtttaagtt
     4081 gatttcggct gggcttccag caccttctag tacaataata tcattttcat ctgctaaact
     4141 ctggtaaact gcctggattt tcgggataag ggtttgtttg aaatcgtggt acgtcacagc
     4201 atccatatta tctaaaattg cacccataaa aaccacttgc gactgcctgt cattggtcgg
     4261 tttaagtaac acgggattca tccggacatc tggaaaaaca ccagctgctt ctgcttgaaa
     4321 aacttgtgcg cgtcccattt catctcctgt cgccgttatg aaagaattga gtgacatatt
     4381 ttgagattta aatggaacaa ctcgctttcc tttatttttg aataggcggc ataggcctgc
     4441 aaccagtaca cttttcccgg catcagaagc ggtaccttga atcattattt gctttaccat
     4501 taattagtca ccttccccgt atgcgcgaaa aaatcggctt cttttttgaa cagtggatag
     4561 ccagcttgtt gatgcaattt gatgagccaa ggctgtacta atcccgcttg ttcgacatta
     4621 cttttctcta agaaaacgtt gctcgtttcc ccgtctgtca aaacgcttcc gtccttcagc
     4681 atatagacat aatcacaaat ttcataaatt aaatcgatat catgactgga aataagtatt
     4741 ttctttcctt ggcttgcaag acgttcgatg atttccatca tgattttttt gccaatcgga
     4801 tcaagaccag cagttggttc atctaaaagt aaccaatctg tatcaagaac aagggcaccc
     4861 gcaattgcga cacgtttttt ttgaccgtag cttaaatact ggactggttt atgctgaaag
     4921 tcctttgccc caacaatgtc taatactttc gtcactcgtg cctctacttc cgtttcgcta
     4981 acacctaggt ttctaagtgc aaaggctaca tcatcacgaa cattcgaata aaaaatttgt
     5041 tggtcgggat cttggaaaac gatgcttact ttttttcgta aagcaaataa tgcttttttc
     5101 gtatacgcga gtggttttcc ttcaaaataa acggtgccat cgctcggttt gttaatacca
     5161 agtaactgca taaaaagcgt cgatttaccg gagccattcg caccaataag tccgataata
     5221 ttgccttttt ctaaatcaat tgaaacatcc gttaaggctt gtttgccatc ttcgtattgg
     5281 aatgaaatat gttctgtttt aagcaaattg gcttcctcct agatatgaaa ttctccttga
     5341 tatagcttca catcaagtgt tataaccatt tcattatatc ttttcataac acgattaaat
     5401 aaagtattta cgagcatgcc aaatgaacga taactatttt ttatgccgtg ataaccaaaa
     5461 cgcaggctct gcgcttttcg aattgccgcc gcttcctcta agaaaataaa gataaaacgg
     5521 taaattaaaa tggtcagttc aatcagtact tttggaataa aaattcgctt catcactttt
     5581 gttaattgta ccacgggaac ggtcaagacg aaaaagtagg ttgcggctaa gcaagcgata
     5641 ctccggaaaa agacttgtgt tgccgtcgta atagtcacgt ctgatacacc gagatacaaa
     5701 ctcccaatcg aaatcgaagc gagaaaactg cttggatctt tagaaatcga aatgagaatc
     5761 gaaagtaaac taaaaagtag aaatgaaaat ggtaaaagga gccatttcaa atattgttta
     5821 aagtgaattt taacgacata gagcgtcaat ggtaccatgc agaagaacag tattgcttgg
     5881 atgagcacag gaccagttaa cgcgagtatt agaatcgcga cataaaataa tgcttttaat
     5941 gatggcgaaa aagctatcca ccggttttga taagcatatt tatcaatggt taacatcgtt
     6001 ctcagctttc cgcttgccac gacttacacc aatgacatac gcgataattc ctgttccgat
     6061 acaaccttga agcgtaaata ataagctttc aatttcacca ctttttggtt cataaagagg
     6121 ttcaaaccac ggttcatagc ttggatcgat tttggtgatt tccgcctctg cttccccgtc
     6181 cgagccgccg tattctcccg ttttattgaa gaagaatgga ctaaccatta acaatactac
     6241 taatagaatt aaaatgacat tgatatttat ttttttcatc gtaattgtgc caccttttct
     6301 ggtaaatttt tgctaataag attgtacatg actaccgtta gcaatccttc tgcaatcgca
     6361 attggaactt gtgtcacaca gaaaatcgcc atgaacttca gaatggatgc catcatgccg
     6421 gatgctggat ctgggaaaac gactccgagc tggacgctgg tagttaagta ggttgctaag
     6481 tcagctgtca tcgcacataa gaaaatcgaa acacttttat tacagtttaa tttacgagcg
     6541 agtttgtata cgacaaaacc aaccattgga ccgataaccg ccatcgacat tgcgtttgcg
     6601 ccaagagttg taataccgcc gtgtgcaagt agtaacgctt ggaaaagtaa gacaatcaca
     6661 ccaagtacac tgacaacgag cggtccgaac ataacagttg caaggccaac accagtcgga
     6721 tgagaacaag atcctgtaac ggacggaatt ttaagcgctg aaagaacaaa gataaaggct
     6781 gcgcatagtg ccaacagtaa tttgttgttt ttatctaggg caattaattt acgaatacga
     6841 attaaaccaa gtacaaggaa tgggataaat acaatgaacc aaaagacagc ccatttaaca
     6901 ggtaaaaagc cctccataat atgcattgcg tgtgcggatt ctgggttcgt taaagtaaaa
     6961 taaataacac ctattaaaac aaatggtaga aacttccata attttttcat ttatattgct
     7021 cccttctttt tttcacgata atcgtggtaa agtatgacat tttttcgtct gggtttatct
     7081 cgttcatgcc gtatgtgatt ttttcagtcg ccatggcaac atcgcttact actactgctg
     7141 catcaagtaa attcagtttt tttagtaatg tcgtaagaag gggtaaattg cttgctgctt
     7201 tcattaagac aactgtgtca aataaagtga gcgcttgttc gattttttca gcacctgctg
     7261 ttacagggat gacagcgaaa ctttcctcgt ccattacgag tggtaattca atcttggagg
     7321 cgatattgga aaaggacgaa atacctgcga gtgtcactgt ttcaatctct ccttttaata
     7381 attcgagtaa atagctataa gtgctgtaaa ccattggatc gccaagtgtg atgaaaccaa
     7441 catcatgccc gttttgaaca tctgctttga tttcttcggc gatttctttc catgcaagca
     7501 ttttttcttc tttgttgtaa ctcattggaa aatggcgttc tttaatgatt aatgtatctt
     7561 ttaaataagg gctgacgatt ttcttagcta aactttcgcc gccttttttg ggttgtggcg
     7621 tgtagagaat ttctaaattt ccgagtcttt ctgctgcttc catcgtgact aacttgctat
     7681 ctccaggacc tgtaccaatg ccgtaaaatt tagccacgtg ctttcaccct ttctattgcc
     7741 gtgtggatat gatcgataaa ttgggcttga ataagcggat tttcgcctag accttgcaaa
     7801 tgacattcag tttgaatgcc agcttgttcc agcgtgcttt tccaagaatc ctcgtcatca
     7861 gaagccatat cgttcgtagc gtgatcacct gctacaagca taaacggcat taggtgcgct
     7921 ttttttatat ttgcttgttg taatcgttca attacttggt caagaccagg gtaactttct
     7981 accgcacaaa ggtaaattgg ttcgtttaac aacatatggt caaggcatgc ataggcgctg
     8041 aaagcacgat gcttcgaacc atgtcccatg agaattagcg cttcttgttc ttttaaaggt
     8101 ggcatttggt ggcgaatggc ttcgattgct ttttcgtaat cttccatcga atcaagtaac
     8161 ggttggctga caataatgga atcgaaatcc ggcttgaatt tttccacctg tgcagtgatt
     8221 ttttcaaatt caccaccact aataatatgt agcgactgaa taatgacttc tttgtagcct
     8281 aattccttta gttggtttaa tgcttggctt ggtgtgttaa tatgcatatt gtcacgagtt
     8341 tttagttttt tgatgatttt attggatgtg aatgcacgaa acacgttgta atctgggaac
     8401 tcttgggcca cttttttttc acaggcttca atcgtttttt ctcttgtttc aggataactt
     8461 gtgccaaaac taacgactaa aatcgctttt ttcattgtgg tactccttct aattttgttt
     8521 tttggattag ttcaattaag ctctctggtg tggcgctttc ggcttcgata aaattgttga
     8581 taccgaatga tgctaacgtt gcgctcgtga accttccaat ggaaagaatt gttttcgttt
     8641 gtaaaatggc tttttcttcg gttgttagta cgtcgagtaa attttgaacg gaacgcgaac
     8701 ttgagaaaca aacttgttca aagcttgcaa ggtcaaatgg tcgttctgtc acaggacgca
     8761 tatcatataa cggcatcatt tccatcgctt ccacttctgc taaaattgcg ttaacttctg
     8821 ccgtatcaac tatgcttccg ataattaagt tgctcacatt tttctgtaac cgtggtaaat
     8881 gctccaaaat taattccgtg ctccgccttt taatgaaact atctggaata attccttttt
     8941 cactaaaagc ttcttttgtt tgtttgccaa tagcggtaag atgggtattt tttagagaac
     9001 gaatatctaa atcaagctgg gctaaataat caaaaaatcg ttctaccgct tctttggatg
     9061 tgaaaagaag tccgcttact tctcttagtt cttcttttgt tttcgttggc acaacatcta
     9121 ctacttgaat attgggatac attgttactt ctccgcctaa atcgcgaatt tgttccgcga
     9181 gcatactttt tccagctcgt gctcttggaa gtaatacttt tgtatggaaa agtggcattt
     9241 cctcaaagaa gttaagctgc ggtcgtaagc tcaccacatc accaacaaca ataagtgccg
     9301 gcgaagaaat accagattcc gctacttttt gttcgatgtt ttgtaagttc ccggtaaccg
     9361 ttaattgttt gccgcgagat gcccattgta caatcgcaac acccgtttcg gcttttcgac
     9421 cattttctag taagttcgca caaatattag gcaaattagt cattcccatc aggaaaacga
     9481 gcgtaccttc cagtctagca agggcttccc aatctagtgg atcgcgtcct tttttcaaat
     9541 gtccggtaat cacgtgaaaa ctcgaagcaa aattacgatg tgttactggg attccagcgt
     9601 aggcaagccc accaattgcg gatgtgattc caggaataac ttcaaatgga attcccgctt
     9661 tatagagtgt ctctccttct tccccgccgc gaccaaacac ataagggtct cctgctttta
     9721 gacgaacaac cagctcattt gtcgcagctt ctttaacaag aatttgctcg atttcctctt
     9781 ggggaattgg atgatgaagt ggttcttttc cgacataaat gagtttacaa ctagcttttc
     9841 gttcttggag catcgctggt tcaacgaggc gatcgtatac aataacatct gccttttgca
     9901 gtgcagctaa gcctttcacg gttagcaact gtgcatctcc aggacctgca ccaattaaca
     9961 tgacttttcc cattagtaga cctccaattg agttaaaatt tctggtagtt cgcttaaatg
    10021 atttatttcg attggataat ttaatttttt gcgacgaatc acaataactg gaatatttaa
    10081 ttctgcggca gctgcgagtt tttcttgaaa gccaccttgt tttccactct ctttagtgat
    10141 taatacatct gccccagtca tttctagttg agttcggttc gcttctttgg tgaacggtcc
    10201 tttcatgcca atgatctggt cggcaacgag acctagttct tcggctgaac gaattacatc
    10261 agacactggt aaaatacgag cgatgatatg tcgattgttt aaaccagcta cgaattctgg
    10321 taaattttta ctaccagttg taagaaagat tcgtttccca agtttcattg caactgcaca
    10381 agcttcctca atatctgcta ccaaataagt attatctgtt tgttcactag tgcgttcaaa
    10441 acgaatataa ggaatgtccg cttctttgca tgcctccatc gctgtttcag aaacaatggt
    10501 cgcaaatgga tgagtcgcat caataacgag gtgaactttt gtagcatgcc attttaggag
    10561 catttcctct tttgataatc tgccacaaaa tacgttttcg gcatgttgtt tcgctaaagt
    10621 ttctccgtaa tcggttgcga cagagagtat aaaggcttgc tttttttccg ttagccagtc
    10681 gctaatcgcc aagctatccg aagttcctcc tagcacgaaa atcatagtgt gtaacctcgt
    10741 ggtgtgatca ttttgccatt tttcacgtag gtttctttgt ttcctacaat caccatcgtt
    10801 gtcatatcca ctaactcata atcaatatct cgcatcgttg taatgatttt tcgctcttct
    10861 tttcgaccaa catctttcac aataccaaca actgtgtccc ctgatttatg ctccatcatc
    10921 ttttgaaaag cattggccaa atgattggcg cggcctttac ttctcggatt gtaaaaacag
    10981 acaacaaaat cggccattgc agcgtgggtt agacgttttt cgattacttc ccatggtgtc
    11041 attaaatcgc ttaaactaat atggcaaaaa tcgtgcataa ttggcgcgcc gagaacagca
    11101 gcggctccaa tacttgcggt aattcctgga atcactttga cttctaaatc tgggttgctt
    11161 ttttctgcga gttctaaaac tagaccagcc ataccgtaaa ttcctgcatc cccacttgaa
    11221 acaactgcta ctttttttcc tgttagtgca atatcaacgg cttcttggca acgatcgatt
    11281 tcgcggcgca tgcctgtttt cactacttct ttatctttaa ttagctcttt gatgagtttg
    11341 atgtacgtta cgtaaccaac aatcacctcc gcgtcttcta ttgcttgcag tgcttcaccg
    11401 gtcattaatc gtttatctcc tgggccaatt ccgattacat aaatcatttt gccacctcac
    11461 tatttttagt taatttccct gctgcgaaag tcacgccatt ttcagcaaat cggcttgtaa
    11521 caacatttcc gttactacca atgtctgctg acgatagggc gacatttcct acttgaacag
    11581 ttttttgaac aaaagcggat gttggatatt ttccagcaac tgtttgtaat tcttctgctg
    11641 gatggacaat aaatgggaca cgccatttct ccgctaaatg aagaattgcc ggttcttccg
    11701 cttttaaagt aatactatga atctcacgga atgcccgcgg gtgtatgttt tcttgttcac
    11761 aaaaatgtgt aaatgctgca gctatcgttt ccgctgaaac gccttttctg caaccgaccc
    11821 cgaggataaa ttgcttaggt accagctgga tgcgttcatg tgtcgccact tgtagtttat
    11881 atttagttga aatgtaaact tgcgggctaa cttcttccat tgtaaaaccg cgtgtatcta
    11941 tatctaatgg ctcatcgatg tacaatccaa cttcttttcc tgctgcaagt aaaccattga
    12001 tgcgtttcgt tgtcgcttta aaatctggta aataaccatt taattgtttg gcgatattat
    12061 caatggcagc tacatttgcg cggtctgttg cggttgtaat tactgccgca ccacctgtta
    12121 tcgcagcgat ttgttcggtt agttcatttg ccccgccaac atgtcctgaa agcaagctga
    12181 taataaattt cccatgttca tccatgacaa gtactgctgg atcagacagc ttgtcttcta
    12241 tcgctggagc aagcgttcga accgcaattc cagtcgccat aatacaaatc aatgcttgat
    12301 attttgtgaa aatttcgcgc atcgctgttc caaaatccgg cgttaaagaa tttgtttgct
    12361 cattgcaatg ctttcctggt acaaaaatcg ttgctgctac cgtttttgtt aacgttattg
    12421 ctaaatcgcg accacgttct gtgacagcaa taatcgccag tttatctgta ttcatgtttg
    12481 aaatccttgt cgtatagctt agaataataa aactcttctc caaggaaatc accgaccata
    12541 ataagcgccg ttttcgtaat tccagcttct gttacttttt ctgcgatatc ttctaacgtg
    12601 ccggttactt tcttttcttc cgcccaagtc gctttgtaaa tgacagctgc tggggtttct
    12661 ggtttataac cgcctttgat taattctgaa acgacttttc taataccttg aacggacaag
    12721 aaaattacca ttgaagtttg gtgcgccgcg tatgaacgga gggattcacg cgatggtact
    12781 ggagttctgc cagccattcg ggtaataatt acactctgac ttacttctgg aactgtatac
    12841 tccaccccaa aactgcttgc cgcgccaagg aatgaactca cacccggtgt acatgtgaag
    12901 ggaatcgaac gctttttcat ttcctcgacc tgttcacgaa tcgaaccata aatagaaaag
    12961 tctccggttt gcaaacgaac cacttcttta ccagcagtca cgcccgcttc catgcagtcg
    13021 atgatttcga ttaaattcat gcttgcacta ttatggattt cgcagtctgg tttacaatat
    13081 tctagcaact ccgggtttac gagcgaccct gcataaataa cgacatccgc ctcttttaat
    13141 aattgatatc cttttaaggt aattaactct ttatctcctg gtcctgctcc gacgaaatgt
    13201 acttctgcca ttttcttcac tcctctagtt ttttacagcc aataatgacg gttggatttt
    13261 gtggttcaaa ataatgacct gctccaagtt tatgccaact cgaaacttgg atttgtttca
    13321 tcgttaattc actcactgtt aatttttcca aatggttcat tgcagttaac gcattttcaa
    13381 gcaaaataaa attaagtacc aaaccgcctc ccgggttcaa atgtgccaac gaccagtcga
    13441 taatatcggt taaattgcca ccacttccac caataaaaat agcatcaaat gtttcctttt
    13501 caggcaattc aattggcgcg tatgcttcga taactgttac attttctaat ccaaatttcg
    13561 cttgattttg tttaattaaa tccactgcat ctgggtttcg ttcaatcgca gtaacttgga
    13621 ttttcgggaa attacaagca acttgaagac caacgctccc agtccccgct ccaacatcta
    13681 gtaatttctt tgacgtatca tctaagttaa gtaaatcaat gcttgccgct cgcacttctg
    13741 cttttgtcat cggtacttta ccacgaataa aaacctcatc cttcatctac aatcaccact
    13801 acattcatat cgtatttttt tgctacttgt tctggtttca acttatgaat tcgttcctct
    13861 tttgaactca aattttctcc aataaacagg atttttttta atccacgttg taaaatttca
    13921 gcagcgattt catatggacc aatgattgta tctgttacca tcgcgacttt ttcgtgttgt
    13981 aacaagaagt cgaagtttgg cgttttaccg tggctgctcg taataaaaca gtcattcatc
    14041 ggtaattgaa ttcgatgaaa catcatttga atcgcactaa ttcccggaac aatccggaca
    14101 tcttctgaaa aatttgccag cgcccagttg ccaatcccat ataatagtgg atctccggaa
    14161 gctagaataa ccacgttttt gttttgatgc gggatgtttt tcaaatctgc tagttttttt
    14221 ggcaaaagca ttggcgttgc tgtcgttagt tctgtgattt cttgtaattg tcttgttgat
    14281 ccatacacta tttcggcggt acttaacact tgttttgctt cgtttattac caaatttgta
    14341 tctcctggtc caatcccaac tactgtaatc atcgccattc ctcccggagt acatcgatat
    14401 ctttcgttgc agcaagcaac ccacgttcgg tcgaaaaagt aactacatcg acttccacac
    14461 taggtttcgt gaatttcaaa aatcgttctg atcttgcttt gattttttgc acaatgacgt
    14521 catatacttg ggtaaagcca gcttcttcaa ttaattcgcc tgctgcctct gtcgtattgc
    14581 acttctccac tgcttgtaaa agcgataacg gggcgccgag caaagctaaa ttagcgacta
    14641 aaatttccgc ccgcgcatct gcatctttac tgtacgtcgt aaaaatccct gctgaaacct
    14701 tcaccaattt gccaaaatga ccaaccatta gcactttttt gaaagctaga cgctgtgttt
    14761 cttttaacat ataaccaacg aaattactca tggaaacaat atttccgctt gaaaaaccaa
    14821 gcgtattctg aacaaaatca tccccgtaat taccgggaac aagaataatt tggtcgagac
    14881 cttgattccg tttcatttca agctccatcg ataaggattt tttccagcct tcatccgaca
    14941 taggggtaac aatgccagtc gttcctaaaa tagaaattcc accgataatc cctaagttgc
    15001 tattcatggt tcgtttcgcg cgctcttctc cttctggtgc atagactagt atctttgcac
    15061 cacgattttc gccaagcgat tcgcgtacgg ttgctaaaat atttttccgc ggtgccggat
    15121 taatcgccgc ttctcccact gcaacagaaa ttcctttttg tgtagcgcga ccgataccaa
    15181 caccaccatc taatacgact tccgcgttat cggttagatc aacatctaca aaaatccaca
    15241 ttccgtgtgt cgcatcaata tcatcgccac catctttttg aaccgctgct gtggctttgt
    15301 ctttcgaaaa cttttgatac gccacgggga tttccagaat cgttccgcca gtagttgtga
    15361 cttgtactgc actcacttct tcttgcgtta gaatcatttc cacacaagct ttagcagcag
    15421 cagccgcaca cgtaccagtc gtatagcctt tacggtattt tttgccgtta taataaataa
    15481 aatcttccat tactcgtcgc cttctttaca tcgtaatcaa gattgcatta atgatagctg
    15541 cagcaagatt actaccgcct tttctaccgc gtgcgacaat ggctgggata tctgtttcta
    15601 aaatttcctc tttacattca gccgctccga caaaaccaac cggtactgcc actactgcat
    15661 ctgcttgcaa ttccccactt tctgtcatct cgataatttt atacaccgca gttggcgcat
    15721 ttccgaggac aaatagtttc ggtccatctt ttaaagaagc gagtttaatt ccagccatag
    15781 agcgtgtaat cccatgctgt ttggcaatct ccatcgtctc tgggtcactc acataacaat
    15841 gatatttaca cccaagttca tctaaaagtc gtttattaat tccactaagt gccatattcg
    15901 tatccgtgaa aatagttcct ttattttgaa gaacatgaat gattttcgcg atggcatctt
    15961 gttgaaaaac gaggctatct aagtaatcaa aatctgccgt cgtatgtatt gcacgcttga
    16021 taatcgcttc ctctaacttg ttttgaaatg tgtaatctgg acgaatatca ttaataattt
    16081 gttgaataat ttcaaagctt ttctcttcaa ttttggctgg attcttaata tagttcatct
    16141 tgccactcct ttaaaataat agtagataaa tacttgcaaa aatgataaaa gcgatcgttg
    16201 aagccgtata tagcaaatga atcgtttggc taatttcttt ttctgaaacg ggtttatttc
    16261 cacttccaat ggttggttta atgactgttt caccgaagta ctcatgcgtt ccaccaagtg
    16321 tgattccaag cgctcctgct actgcacctt caggataagc gcaattagga ctcgtatggt
    16381 ttttccgatc tcgaagcccg atttgccaag aagcacgccc gtcatacctt aaaataaaac
    16441 ttgcaatgac aaggaaaaac caagctaatc tcgctgggat aaaattggca atgtcatcca
    16501 ttttcgcgga aacaaaacca attgcgcggt atttttcgtt tttataaccg accatcgaat
    16561 ccagtgtatt aaccgcttta tacatcaaag caagtaccgg cccaccaatg aataagtaaa
    16621 aaagtggtgc gataacgcca tccgctgtat tttccgccac agtctctatc gtcgctttac
    16681 taatttcttc tgcggttaac ttatccgtat cccgaccaac aatcattccc acttgcactc
    16741 ttgcagcagc caaatccccg tccgccaagg tccgctgtat tttccgagcc tctttcgcaa
    16801 ggcaagtcat cgcaagcgtc gtatagccta agtaaacaaa aacagctatg taaagccagt
    16861 aagcaatttt ggcactaaga aatagaatga accaggatac aactccagtc ataccaaccg
    16921 tgagaacaaa tagcaatcca ccggcaaaat acagtgattt accatgaaag atttttcgta
    16981 aaataatagt caaccactta atcaagttgc cgatcgcttt aataggatgc ggccagctat
    17041 atggatcacc taataagcaa tctaaaatga atgatgacgt ataaaataac aatatcatcg
    17101 ctctatcgct ccaaacatat gcgttattat caatagattt tgatagaaat ggatatgcag
    17161 gtaactagcg aacgtattac ctttttgata accgccgtgc cattctttga caattttgcc
    17221 atcccgcttt ttcgttaatt tcatacgtgt tggttcggtc gtttcaaaaa cagaatgatg
    17281 aaattcatga ccgcgaatag ctgtcccttt tttaccaagt agtgtgtctt ctaaaggttc
    17341 ggcgatacag tagccaaact tccgaagccg cgttgtcatc ttactaactc catcaaaaac
    17401 ccctaccatt tcataggatt cagcttccat ttctaaactc gaaccaagat acatcaatcc
    17461 gccacactcg gcatatattg gcttgccttg ttcatgcgcc gccaaaatcg attcgcgcat
    17521 tgacttgttc ttcgctagct gttccgcaaa aacctccgga aatccaccac cgatataaat
    17581 aaaatcagcg tccggaactt ccctttcttc tagcggacta aacggaatca gtgtggctcc
    17641 agttgagcga ataaaatcca agttatcttg atagtaaaaa tgaaatgcgg cgtcgagcgc
    17701 ataagcaacg cgcactcccg aaaagtccgg tacttgtatt tctggtgggt gtacggtcaa
    17761 tttcgcacca gtcttactaa ttgctaacaa cctatctaaa tcaacatgtt ccgcaatcaa
    17821 atcaccaagt aactcccatt tcgtttctaa ttccgtcatt tcctcttttg gcactaatcc
    17881 gagatgacgt tctggaagtg ccaccgccgc atttttcggc aaatacccta aaacaggtac
    17941 atccgtatag cgttcaatcg ccccttttat caatgaaaaa tggttttctg aagcaacgcg
    18001 attaataatc accccagcaa tggttaattc cggatcaaaa cgattaaatc catccacaat
    18061 tgccgccgca gaagtggata tcgctttacc atccacgact aaaattacag gcgttttcgt
    18121 gcatttagca ataaaagatg tactcgaatt atcacgatca ataccaagtc catcaaaaag
    18181 acccattaca ccttcaatga cggaaatatc cgccgactct ccgtgctttt gaaaaagagt
    18241 agctagcatc gcatcatcat ctatcagaaa actgtctaaa ttgatagaag caacgcctgt
    18301 tatcgcttga tgataatttg tatcaatata atctggacct actttaaatg gttgaacccg
    18361 cagacctctt ttttttagcg cgtgcataat tccaagtgtg atcgttgttt tacctgtacc
    18421 acttgatgca gctgcaatta agattttgtt catctttttt cacctttcac tttagccata
    18481 aaaaaagacg ccaaacagaa cattggcgtc tttttgagat ttacgcaaat aagctatttc
    18541 cttgtagcac aaagaaactt ccccatcgtg aaaatctact taatcaagac aactcgctcc
    18601 cttagaagtt gtttttggat atcgaatata aaagcggtct cctgacttaa catcatccta
    18661 ctcaccagtc ttcccggaat tgcttccagt gacatatgtt tggttttcgt ccgtattaca
    18721 gtagctaggg cctgtagagg attttcacct ctttcccgga ttaatatatt cacctattta
    18781 gttgtttagt acccggcaat tcgtcttttc cagcgttctg gcaatacttg gtaaacgact
    18841 tctgcgacaa aaatgttgca aatcgaacca atagcaagca ctgggaacaa aacaaacacc
    18901 gcttgatgca ttaatggata aagtgcaagt aatgataatg gacaattaaa aacaaaagca
    18961 acaatactag aaacactaac cgcaactaat tgattctttt ctgctagttt ttggcgcgta
    19021 aagccatatg caatcatcgt tacgcccatc attccagcaa caatcaaatg aattggtagt
    19081 gtgagcggaa aacccgctag taatgctgat gttaaatgac cgaaaatccc aagcactgct
    19141 ccgtacatcg gaccaagcag caaagtccca ataaaagctg gggctgcgtc aaatgcaact
    19201 gaacccatta attttatgtt tgcgccaatt acacacattg caatcaacat cgcacataag
    19261 actaattttt gaattttcaa ttgaaaagat caccctctca tgaaagcgtt atttccattt
    19321 cattatatcc ctgttaaacc actggtacaa ggtcacttag agcactgaaa acaaaatagt
    19381 gcaagctttt aaaatccctt tttttctgtt ttatatggca aaaatagcca ccagtgtgaa
    19441 ctttttctca atttctattt ttgagattta aaaaatgaca atattttgtt ataaaaaaga
    19501 atttattgtt ctatttaaaa tgcaggatta aacgttattt aaagcgattt tatggtataa
    19561 ttagtgcaga aataaaacag ggagggaagg actttggaga aagaaaaagt tgtaaatatt
    19621 caacctttga tggatagtca agtagagagc caattcaccc aacaaattca agaagatttc
    19681 aacaaaaaaa atccagatca ctctgcccta cttcattcac ttgaaaccgt tgaagtgctt
    19741 gatgttttaa gcgattatta ctctgcacat gaaaaacaaa aacaaccaag aaaagaaacc
    19801 actagcgtaa acaaaactgg taaagagcat aaagaaatca agcaagctat tcgttacatt
    19861 aaaaaaaaca ttcaccgctc catcacatta gaagaagttg ctaattatgt ctatctaagc
    19921 ccgttttatt taagtaaatt atttaaaaac gaattaaata ttaattttat taattacgtc
    19981 aacgaacaaa aaatgctcta tgcgaaagaa caactagaaa aaagtgactg ggcggtccat
    20041 acaattgcta aaaatttagg tttttcaagg gcaagttatt tttgcaaagt ctttaaaaaa
    20101 gaattcgata tgacaccaaa agaatatcgc gactccttaa aataaaaaac gatttcagcc
    20161 aaagccgaaa tcgtttttta ttattattat gactgccaat cagccggata agtaacataa
    20221 ataaatcttg cttcaccagt tacggaaaac ttgatttggc taccttttgg aatgaaaata
    20281 atttctcctg gacctgctga aacagttcga ccatcaatga caacatctag tctgccttcg
    20341 ataatgtagt ctacttcatc ataatccaag aaccaatcga aagttgtatc tttcatttcc
    20401 attaaaccaa aacctagacg tttactttct tctagtgtta ctaagtcttt tgtataaaca
    20461 acatcgctag gatttcctgt gtctaatcga tcttcctctg aaacttttac tacaggaagt
    20521 ttcaccgata gaataccact tggatcaacg tgtttggaac tttggcccat tttttctagg
    20581 acaacttgtt ttactagttg ctcaattaat tctttactaa tatcagccat tatctttcac
    20641 cgccgtttgt tcttttgctt tatttttctt catcattcgg ttagccatat agataccgac
    20701 agctacggca gttactcctc cgacaagttt tccaacaatc atcgggaaaa tcatatcttg
    20761 ggcaacccca gctgtgaaac ctagatgatc ccctaaaaca aaggccgcag atacggcaaa
    20821 agcaacgtta ataattttac cgcgctcatc catatctttt agcatttgga acattgggat
    20881 actatttgca agtgtcgcaa ccataccagc cgctgcaact tcattcatac ctagcaattt
    20941 acccattttc ataagtggtt tattgaacac ttttgtaata acaaaaacta aacagaaagc
    21001 tcctgctaga actagtgcga taccaccaac gatttcgata ccttcgccaa ttggtgcaat
    21061 tcctggaata atagttaatc cagtaagttg ttgaatagct ccagcaacta gcccaatagt
    21121 agcaacgatt actacccctt ttccaaaaat cgtgaagcct ttaatcatgc cttctggttt
    21181 gaaccaaagg cctaacataa taagggcagc tacaagaata attggtacta agtttttgaa
    21241 aatcatgatt ggagagaatc cagctacaag tccaccgatt aaacaaccaa ttggaatcgt
    21301 aataatacca gataatacgc cagttgctaa atatttatga tcttcttttt taataattcc
    21361 tagtgctact ggaatcgtga aaacaatagt aggtcccatc atggatccta gaatagctcc
    21421 cgcaaataga ccagcgtcgg gagttagcgc aagttcttga gctagcgcaa aaccacccat
    21481 gtcattcgca agtaacgttg ttgcaaacat tgccgggtca gccccaagcg ccgtataaat
    21541 tggtacaaca atcgggctta aaatttttgc taaaactggc gctaatgtaa tgataccgac
    21601 cattgctagc gttagcgatc ccattgccat aataccttct tcaaattgtg cacctaagcc
    21661 aaatttgttg ccgataattt tgtcaatagc tcctagaatc ataaagatta ccattaaata
    21721 aataataatt tcattaatgc tcaaaagtgt tcctccattc tatagatagc gttttaaaag
    21781 ttcatcagga gaaggaatga ccgtatgatg tatcaccttt tttggttcgg cggtttcgat
    21841 tagaatccgc atcccttctt gaatagcact aacttcccct gtaaaaacag ccacaaattt
    21901 cccaccaatc gaagcaccga gcgtcatgcg tttcaaatga atagccgatt ttttcagcgc
    21961 ttcatttact gcatttagtc cagcgcccaa ctgactgatt tcgataattc ctactgcgtc
    22021 aacttccact ttagggtgtt tattgtttag aaaagcaagt aattcttcgt gcgccatatg
    22081 caaaatataa gaagaaacat gaaatttgcc agcttcttct tttgcatctt gcatcgcact
    22141 agtaagttca ccggaagcac cttgcaaaat aatcaaaaat ttaccaggac atgtcggacg
    22201 aaaagtaaat aaagttacat tgcctgcttt caagaaaaca tcggccattt cgtacccttt
    22261 acttatactc ctgagttcaa gaatacctaa ggactgttca gccataacgt tctaccgagt
    22321 cgataatgcc gacgatacat gcgtccactg ggatcgtgtt gtccccagtg gatgctcgtg
    22381 ctgcgctacc agttgtaacg agcacaagat cgccgtttcc tgctccggca ttatcagctg
    22441 ccactatgga atgtcttaca tcttccgttt catcggtaca aatctctact agtagtagtt
    22501 ttaaaccatt cagtttttcg tcttttcttg ttgcccataa actcccggta acttttccaa
    22561 tttgcatgcc gctcttcctt cctaactttc tttaatgcta attcgttttt cctgtaagta
    22621 atcttttgca agtggtgtta agaaacttcc tttaggcaaa atgaattcgc ttttgttctt
    22681 agtaagtttt tcaacatcct gttcggtgat gactttactt tctttggtct cttttaccgg
    22741 actttcgata aattcgacac caaatcggct cagtttctcc tcatattctt gaaaaagttg
    22801 tctgatacca tatttagcgg aacgtttata agcatgcgct ttgataccac tcttcattat
    22861 ccaagttggc cgccctgcta aaagatgatc tgtaataaat tgttcttttt tattcatcgg
    22921 agcaaacaaa ctgattcgag ctaattcagc gatatccaat tcttccagta gtaaaatgtc
    22981 acaagcgcgt tccgaacgat cataaagcga aacttgatat tcttttagat aacactgtct
    23041 gagagtgtgt tctgaatctt gtcccatgat aatcattttt ttctctggaa gttgtaatcg
    23101 tctcatgact tcctcagtga cagcttttat gagtgcgtct agttccatac tcatttagcc
    23161 tttgttttct tgattatttg acctcgaatt ccctttttaa aaccacatgc gttggcttcg
    23221 tcataatcaa tgtgcatata tgtagcaaaa tcagggctaa tccgaacaac aacatcatca
    23281 aaaattagtg gtctgtcacc gttaattttc acttgaacaa tttcactttg ggatacttgt
    23341 tgtttttctg catcagcagg cgtcatatga atatggcgtt ttgcaacaat aagtccttct
    23401 gataattgaa cactgttttt tgcggataat agtaaaattc ctggtgtccc tgctatgtct
    23461 ccactttcac gaaccggtgc tttaattcca agcgccgtac catctgtgga gcttatttct
    23521 acttgtgttt ttttacggat tgggcctaaa attacaacgt tatgaataac gctttttggt
    23581 ccaacgatgc taattctttc tttacaaaca tattgacctg gttgagatag gtcacggaaa
    23641 tgagtaagtt catacccagg tccaaatagt gcatcgactg tttcacgatc taaatgaacg
    23701 tggcggccgg atgcttctac ttctacgcca gtttcaagta acgcacggcg agtgacttct
    23761 tcaataaggc ttgttattaa ctcattattc atgaataagc ctccttactt tttatattca
    23821 cctgttctca cgcggaacat cagtatccag aataaactag acaatcggtt aagcgcttga
    23881 atgatgtctg gtcgtttaat ggaataatcg gcttccttaa atgctaaaaa ggcagctaat
    23941 tccgtttcgc ggaccatcgt tcttattttg tttaatcgaa tgaccgcatt ccccatcgtg
    24001 taatcaggca taaaatgtgt catttgatag tattttttcg gattatgact acgttcccgc
    24061 agttcttttt catccattcc aagcaaatga actgattcga tttgctcgtt taaaacttcc
    24121 gatcgtacaa tatttcttac aaaggtgagg atttcttgta aatcttccgc aagatcttta
    24181 aactcagctg caacggaaca ttgggtttcc agaatttcag cttccagtgt atctaatttt
    24241 ccgcggaaag cgatttgtgg atggtcttta aacacaagca ggttaccacg caaatgcgtc
    24301 atatgttcag gcttctcatc taaggctcca ccataaatcg tttggaattt tgctctagta
    24361 gtttcttttt tcactggctc cactactact tttgtttctg caatttcatc aatataatga
    24421 aggtcaattt tcttttcaga caagaaactc ttagctgaag gtgtgataat tgtgcctttt
    24481 tttatatcaa gttttttggt tgtttttaaa tcggtgtgta aataggcttt tcgtaactca
    24541 tcttctgtca aaatagccaa agaaccacat ccttttgtcc catttacaat tggtgttagt
    24601 aatgttggga agctttgtat tgcttaaatc tggtaaaaag cgaaagtttc gggcaatttc
    24661 cgagtctgat ggaacccttt tgccttacgc tcacgctttt tcctgattta tgttaaaagt
    24721 tagtcttatt cagcgctttt tggtagaatt gcgtctactt cgctgtgtgg acgtgggatt
    24781 acgtgtacag atagtaattc accaacgcgt tctgctgctg ctgcgcctgc atctgttgct
    24841 gctttaactg cgccaacatc gccgcgaacc ataactgtta ctagaccgcc accaacttgt
    24901 tctttaccca taagtgttac gttagctgct ttcaccattg cgtctgctgc ttctactgct
    24961 cctactaaac ctttagtttc gatcatacct aatgcgtttg cgtttgccat tttaaaattc
    25021 ctccaattag tgttttattt tttattttaa ttctgctaaa actttttcga ctaaactttg
    25081 gatgagtgcg tctgcatcaa ccggaagttc agatgttgct tggttttctt ctttacgaat
    25141 atcttctaac tctaaaacgc cagtagcgat gcgacgaatg ttgaaaagat tttcaggtcc
    25201 gatattatca gatgatgaac ttcctccaac tgccccacaa ccaagtgtta aagcaggtac
    25261 aagatttgtt gttgcgccaa ttccgccaag tgctcctggt gtattaacta agagacggga
    25321 aactggtttt ttcagtgcga attcgcgaat gatttcttta tcttcagagt ggatgattaa
    25381 agtatgtcca gctccttcat gataaagaat atccatgcta agttcacaag cttcttgcca
    25441 agtttcggct gtatagaacg ccaagattgg agctaatttt tctcttgaat aagggatttt
    25501 agcgccaact tttgtttctt cagcgataag tactcttgcg tcagctggaa cagttagacc
    25561 agcaaggtta gcgatatgtt gcacgctttt acctacgatt gctggattca tcgaaccatt
    25621 tggacgtaag atgaatttac caagttgaac agcttctgca tcggataaga agtgtgctcc
    25681 ttgttttcta aattcagcaa tgacagcttc tttattcaca cgttccacaa cgacagattg
    25741 ctcagatgcg caaattgttc cgttatcgaa tgttttggaa tcaagaatat gtttcactgc
    25801 gcgaggaatg ttagcactgc gttcgataaa tgctgggcca ttacctggac caactccaat
    25861 tgctggagta ccagatgaat aagccgcttt taccattgca gatccacctg ttgcaaggat
    25921 aactgctgta tctttgtgtt tcatcagttg atctgttcct tggatggttg gaacagtcat
    25981 acagctgata gcgccttttg gacaaccagc tttttctgct gcttcactaa tgattcttac
    26041 tgtttcaaga attgctttta atgcgtttgg atgtggagaa aatacgatac tatttccggc
    26101 tttaatggaa ataagtgttt tgtaaataac agtggatgta gggtttgtag aaggaattaa
    26161 tcctgctact acgccaagtg gaactgcaac ctccattact ttcttttcgt tatcttcttt
    26221 taacatacca atggttttca tatctttgat gtaattgtaa acatgtttcg acgcaaagac
    26281 gtttttgatt actttgtctt gccaaattcc gaaaccagtt tcttcatggg ccattttcgc
    26341 aagtttttcg cgagcaccat aaccggcatc agctattgct tttacaattg tatcaatttg
    26401 ttgttggctc attgcagcaa gttctttttg tgctttgtta gctgattcaa tgaggttacg
    26461 aacttcttgg attgagcgta aatctttatc ttctagtgcc actagttttc actccttcca
    26521 taaatgtctt ttagtgcgtg aacaagttta tccttgttcg catatttaat cttgcttttt
    26581 gggataggca cattatttaa tgtgtaagca agtttcctta gatcaataac tttcattgcg
    26641 cgaagttttt tctctgcact tttcgtgttt gtgttcactt ctacgacttg ttgaataact
    26701 tcttttggtt cttcttgttc gacttctttt ggttgtgttt taacttcttc ttgaggaaca
    26761 aaaagtgctt ttgtatcttc gctcattctt gcgataacat ggcttgatac taaacaacct
    26821 aagtcttctg ttgcagcttt ccctgcttcg atagctgcat ttactgcacc tacatcacca
    26881 gttaattcaa ccgtagttaa accaccacga atgacttcac attgaatcag ttcgacattt
    26941 gctgctttta aacaagtatc ggcagcaaca acagcaccaa gaaaacctgt gacttcaatt
    27001 aaaccaagcg cttcatttgg cattttttag caccacctta atattgaagt ggattttcag
    27061 ccacattttc tactgccatt ttgaacgcat cacaagctgc tttacatgca gattggctac
    27121 cagtcaaaag tgctccgccg aagtttgttt cggatggtgg gccatagaaa gctccgattg
    27181 ttacgtctgc tgcttttagt gctgcatcta acgcatacat agcttcaagt ggaggggcga
    27241 ttaagtaagc aatcgcttca ccttctgcaa cattcgcttc ttttgaaagg aatgtaccag
    27301 ttcttgaaac acagtgcgcg aagtaaggaa cactatcatc ttcatttgca ctaacaaagc
    27361 tagcgccatt ttcgatgaaa tctactgcta cagaaagacc actttttact tccgcagggc
    27421 ttggtccggc gataataccg ataacttcac cagcgaattt tgtggatgca tttccagcac
    27481 cagcatacat acttttcgca taaacaacat ctacttctgc tgcttttgtt gcttcgtcaa
    27541 gcgctgtata agttacatca tcacaatcag atgtaataat accaaggctt ctttgatgcg
    27601 gttttaagtc taattgttta aatagaccat tatctacgtt agatacaact ttgacactta
    27661 aaacggatgc aggtaattta tcatttttca tgaagtttcc tcctctaact agcttatttt
    27721 aaatcaatac cagaacattt tttctcaagc atattgtgaa ttaattcagc aatgtatgct
    27781 cctgcttcaa ctggtggagt tccgccgcta tggatgttag aaataacagt acgacgagct
    27841 tctggcatac caattgttgg tttgtaagca atataggcac tcatggattc agcagtgact
    27901 aggcctggac gttcacctac aagtaagcaa actacgtcag cgccagtgat ttcaccgatt
    27961 tggtccatag aaggtacacg acaatgttta acgaaaataa tgttatcaaa atctaagtta
    28021 tacattttca aaccttgttt aatggatggc aagatatctt tgatgttagc ttcaattgcc
    28081 gctgagctaa gtccatcacc aacaacgatt tgaagtttgg cgttttttgt cgtattcgca
    28141 cgaatcactt ctaccatttc gttgtcaaat tcacgaccta agtctgggcg agttaagtat
    28201 tcatctttat cttgacattt agtgttcact gggatgaagt tcatttcttt tactaaatcc
    28261 tcagaaacgt aagagaaaac ggaatcttgt gctacggcat ggtccgcacg gaaacgaaga
    28321 attgtttctg ttttgtaacg tggaccagca cgccataaac caagtcgagc cggtgtcatt
    28381 tgtttcattt tcaaataacc ttcacgatca gctggttctg gtactagtaa ttgttttttg
    28441 atatctactt cagtaatatc cgggatgcta ccttctgtta taactgtttc aactacagat
    28501 ttagttggcg cagctgctac tgtatcggtt gttttaccac cggacatttc tgttaaaatg
    28561 ccttcaatca tttgttttaa ttcttgttcg ttcatcgctt agttcctccc ttccttattt
    28621 taggaaaata gatgcatctc cagcacggct agttaattta ccattttcgc tgaatcccat
    28681 tttttccatc cactgatcaa attctttaat tggttttaag ccaaataatt cacgtaaagt
    28741 ggctgtttcg tggtaaccag ttgtttggta gttaagcata acgtcatcac catgaggaat
    28801 acccatgata aagttacatc ctgctgcagt tagaagtacg gacaagtttt ctacgtcgtt
    28861 ttggtcggct ttcatatggt tggtgtaaca aacatcacaa cccatagaga taccagttaa
    28921 tttacccatg aagtgatctt caaggccagc gcgaattact tgtttagaat catataagta
    28981 ctcaggtccg ataaatccaa ctactgtatt tactaggaat ggatcaaatt tcttcgcgaa
    29041 tccataacaa cgagcttcca ttgttacttg gtctacgccg aaatgagcgt cagaagaaag
    29101 ttcagaacct tgtcctgttt caaagtacat tacgtttggt ccagtcgcag caccactttg
    29161 aagggctaat tgtctagctt cttcaatcgt tgctccgtca aaaccgaaag ctgtattacc
    29221 tttttcagaa cctgcgatag attggaatac aagaccagtt ggagcgccgc gacgcattgc
    29281 ttccatttga gtcttcacgt gtgcaagtac acaagtttgt gttggcacat cccatttgct
    29341 tcggaattct tcaaatttat taagtaaacg aacaacgcta tcagtagaat catctactgg
    29401 gttaagtccg attaccgcat cgccaatccc gtaagttaat ccttccatta aggaagcaag
    29461 gataccatca ggatcatcgg ttggatggtt tggttgtagt ctagcggaga aagttccagg
    29521 aagaccgatt gttgtattcg catgtgcgat tacacggatt tttttcgcgc cataaattaa
    29581 atctagattg gacattaatt ttgtaacagc agcaataatt tctgatgtta ggccgcgtgc
    29641 aacacgttta atgtcagcat ctgttgtttt atggtctaaa atccattccc gtaattcttc
    29701 cactgtccag tttttgatgg aatcatggat acggtcattt acttggtctt gaataatacg
    29761 cgttacctca tctgtttcat atgggacaac cggattatta cgtaaatctc caagcgtcat
    29821 tttagaaagc accacttttg cagctacacg ttcttctgca gattcagcag caactccggc
    29881 taaacggtcg cctgattttt cttcgtttgc ttttgccaac acatcagtga tggatttgaa
    29941 ctggtatgta tggccgaata aattcgtttt taaaatcatt cgataaatcc tcctctcaaa
    30001 attaaagcta tttatgtgga tcagttaaag actaaggttt taactactac tggtagcact
    30061 ttcccgtcag caactggttt tcctatatca atataatcac cattatcgac tttgacacta
    30121 tccaagcaaa ttagtggatg cccggctggt aaatgcccga agatgctttg tccgagggct
    30181 tttgccatgt cgtgccatgt aatgataatt aagggatgac caagtgcgat tggttctttc
    30241 attccttcgc aaatggcttt cgcatattct gttacttgct ggaaacttgg gctattttcg
    30301 ccttcaattg caagtgcaat atgttccatt tcattctcta ttttgaacca gctaagtttt
    30361 tccttgatga cttctgccat attttcatct tcttcttgtt tggcaagttt caaaattgga
    30421 atgtttttta ctgggaaaat tttctcggtg taagtaatcg tactaccgct aatttcagct
    30481 gtgtgtgaac cggctccgac cactgttgcc cgtatggttt cgacagattc gatatacttt
    30541 ttttcagtca ttaaactaga ttctgcaatc gcttttccta gcaataaccc aatatctcca
    30601 tatctaaaag gatcacttag cgcacccgtt gagatgcagt ctgcaacgcc tccggaaaaa
    30661 gagatacatt caatctccgt taagaatttc aatcctttat tcgtaatgat tgtttcataa
    30721 aaatcatttg gcgccccgag gccaacacta ttcttaagca gctcaaccat ttcacctaaa
    30781 acgggttgca agttttctgg tgaagttgtt tcaccaagtt taaccggata acctcgtttt
    30841 tctattaaag cttgaatttt tggagcaata taggtgattt ttcttgtttc acggtctact
    30901 ttaattaacc gaccaccaat atctaagcaa gcagtatcaa tgagttctcc gcgatcaaac
    30961 agcgataagt tcgtggttcc gccgccaata tccaaattca caacagaggt attattctct
    31021 ttggcatagg tatgagcacc tgctcctttt ccagcaatga tgctttctaa gtcaggtcct
    31081 gctgttgcta caacaaaatc cccagcaaaa ccactcattg catctaatac attgctggcg
    31141 ttatctttac gagctgtttc acccgtgata ataactgctc ccatgccaat ttcttctttt
    31201 ttaattcctg cattggcata ttctttcgtt acaaaatcac gaatcgcctc cacatcaatc
    31261 aaattatcag caagaatcgg tgtgaacaga atctcacttc taaaaataat ccgcttatct
    31321 gaaatgacaa tacgcggcac ggtgaaactt gatgccatat tttgaatttc taactcggat
    31381 aaaatgagtt gtgttgtcga cgtaccaagg tcaatcccta cacttaaaat tgtttccgtc
    31441 aaaaccctca ctcctttcta gcaaaaagaa aaagcttaaa gacaaataac agtatcgtta
    31501 cttggcttta agcttcatcg ctttttcata gctacttctt tgtagcatgg atagaattgt
    31561 atttaaaatc aaacattgtt ttcgttccgt gttcattcga ttcaatggtt actttgcctc
    31621 gaagtttatc tttaatgtaa cttttgacaa tggaaagtcc taggcttttt tcggacactt
    31681 tacgaacgtt gaacccatga ccgttgtccg ttacttctgc gtgaataata tttttctctt
    31741 cttttatttg tagtaaaatt tcgcctgatt catttggatg aaatgcgtga tcataggagt
    31801 tttgtaagag ttcgttcatg acaagcgcca gtgccacggt tcggtcactg tccaaataaa
    31861 tgcgtttatc aatatccatt cttacagcta cttttggaca atctgtacaa catctttcaa
    31921 tattgtaggc gactgtttcg atgaccatat aaaggttaat gccgtcttcc atttgcttcg
    31981 ataaaagctc gtgtgtcgct gcaatggcaa ggattcggct gacactttca tttagaatct
    32041 tctgtgcctc cacacttgta gaacgtctgc cttgaattcg caataaggaa acaacagatt
    32101 gcaaattgtt tttgacacgg tgatgaattt cacgaatagc aacggattta gaaacaattt
    32161 ctgcttcttt cactttaata tccgtgatgt catgcaagat gagaataaag cggcattcct
    32221 gctcgtcttc ttcttttaca aaaatctgct tcataataaa gtaattcccg gcgataacca
    32281 cttctttttt taactgaatc ggttgttttc cagtttcaat ttgatacatg attgcgtcaa
    32341 acatcatctg gtcgagggat aaattatcat aatgcatgcc ttggatgtct tccatataac
    32401 caagtctttc gtaatactga tccgcagcgc aattcttttg ctgcaaaatc ccgtttcggt
    32461 caaaaatcaa aatggcatca tctagttgat cagtaattga atccgttagt ttactcatgg
    32521 cagacagcgt ggtagaaaca tctcgataag ccgtttcttc attgtcaatt tcaaaatgag
    32581 ctttaatttc ggcgctaata tcattttcta gaattagcac ggcaataact cgctgtttat
    32641 tacgaatcgg ataaactttt tggcgaatta atacgttttc ttgtgttttt gcaagtagat
    32701 cgttagagtt catacctgtt tccaatgttc taagtacacc tggctcatta gaccttaggg
    32761 ctgtttctcc gactactttg tttttgtaaa gtgatttggt tgtttttggt ggtgtatgat
    32821 gaataacaag tgcttcacta gttagcttat tgtatacatc aataaataca tctacatctt
    32881 gatacatggc tgaaacactt aacgacttgg ctgtgtgaat taattcttca atatcgtgct
    32941 ccgataaatc tgtgtagcgt aagcacattt ctcgaatcgt tttagtcatc gctcatcaca
    33001 atcgtttctg cgatttccat catcggacag cgtttgtcca tgctcaggtt acgaatcata
    33061 ttgtaagctt cttcttctgt gatgttgttc tcaatcataa gcacaccttt tgctttttca
    33121 atcacttttc gttcttctaa ttttttggtg agcttttcta attgctgctc taattttctt
    33181 gtttctcgcc ctttggcaat actcatttca acagttggaa tcaaactttt ttcatcaagt
    33241 ggctttacta aataacctaa tgctccaaac cctttagctt tctcggtgtt tttcggatca
    33301 ctaaaagcgg taagtaagat aattccgcca gcaaggcctt ctgaaataat tcgtttccct
    33361 gcttttaagc cgtctaagag tggcatttga atgtccatga taacaagatc tggctgatgg
    33421 cttttgcaaa gttcgattgc ttcaaaacca tctgtcgctt cccctacaac attgtagttc
    33481 gcttcttcta agatgtctcg gatgtccatt cttgtaatag gttcatcatc ggctattaca
    33541 attcttccat tcattcctgt cacgtcctct tcttctgcta ttgattgatt cgtcacaata
    33601 aaggacaaaa tcattctata gaagcattta cttgagcgaa agagtaaaag agctagagaa
    33661 aaaattctcc aagaaaatag aaagagcccc ttaaaaatat tgtgcaatat ttttgaggga
    33721 gccccgttgc tctgctatat ttataattcc acacgtcttt gtgctcggtt ctattataaa
    33781 gtagcatgaa aacgatgtca ataggttatt tgattccagt tgtgaaataa ataactttta
    33841 tgccaacatt ttttcaagaa tcgcactaac atctgtttct gtcggtattc taggattggt
    33901 tgcagtacat ccgtcattta gcgcgccttc cgcgatttga gcaatatttt catttaaatc
    33961 tgtgcggcta ataccacatt ctgttaatgt agttggcata ttgagtttct tttgaagttg
    34021 tttaatggca ttaattaagc tacgaacacc aagacgtgta ttcgatgctg gcatttttag
    34081 taattttgca atcgctgtat aacgttccgc tgctcggtta tccggattgt taccaaaatc
    34141 acttgtaatt ccagcattat aactaattac gtgcggtaaa agtaatgtat tcatacgacc
    34201 atgtggaatt ttaaatttcg caccggctgt atgcgcaata ccgtgattta agccaagaga
    34261 agtaatgtta aatgccattc ctgcaagaca agaggcatta tgcatttttt cgcgagcttc
    34321 taaatcattt ccgtctttat aagcacgctc taagtatgtg aatactaatt ggataacttt
    34381 ttccgccatt gcatccgagt aatcattcgc ttttgtagat acataggctt caagcgcatg
    34441 cgttaacaca tccataccag tatctgctgt aattgctggt ggaacagatt ttactaagtc
    34501 tgcatctaaa attgcttcat ctggcaaaat agcatctgta attagtgggt atttaatggc
    34561 tttttctttg ttagtaataa cagagaaact agttacttcg gagccagttc cactagttgt
    34621 tggaatgaca atgaaaggca ttgcgcgcac cgtaccaagt ttttggccga agaatttcat
    34681 cgctttcgcc gcatcaatcg ctgatccgcc accaattgca atcatcaagt tagcatcaca
    34741 ttcattcaaa acttcaattc ctgctaccac gttttcaatc ggtgggtctg gaatgatttc
    34801 gctaaaaatc gtatatgtat tcgatggatc aattttttct gtaatcgcat taatcattcc
    34861 ggaactaacc ataaatggat ctgttacgat aaagatttgt ttgtctttaa aatcgagtaa
    34921 acgatctgtt gctccttggc caatataaag atctgtttta aaactaactt tttgcatgag
    34981 attacctcct agttttttta aaataaaaaa agaagctttg agtagagaaa tttcctcttc
    35041 caactcaaag cttctttgct aagtaaacag tacgcctttg taccgtaaaa tattttattt
    35101 gtccacttta ttaaaaacca aacccgtgga aatgtcaaat ctttttttgt aaataggcaa
    35161 tgaagataca ttccttgtat cactcttttc gtcgttgaaa agatcattgc ccaccataaa
    35221 acgaagcggt gcacatcttt gtgcgtatgg tgcttgataa aacgtagctc gttcagcttc
    35281 tcggcaccaa accatttaca gtgggcttat ttgttttaaa aacaaataaa aaagccccag
    35341 tgagacaact acactggaac caagaattat acatgctttg cctcgaagca gtataaccag
    35401 ttaaaacaat tagataaaag acctgactta gagtgtctaa ctccttacag tggcgggacc
    35461 gtgctggact ttcaccagac ttccagtatc taactgtttg tatgaacgaa ttcgtttatc
    35521 aaagttatta tagcataaaa tagaccgctt gcaagaagaa tttgctttac gagataattt
    35581 gaaccccacc actgacaaac tcacggaaat aatatcgact gtaaaaagtc gtgacatagc
    35641 gccgttctag ctcaaataaa atttcgagtg gatccgtttt ttcgagttca taaagtatac
    35701 cgacaacggt accactatgc gaaacattta accccactaa atccaagttt tccgtcactt
    35761 ccacaatctc tcgccaaaat ggttttggca aaatagtttg gttgcaggct gcactaactg
    35821 atgcggcttt accaagtaag tgaatggatt tttgcgtgac ggcttgttga aaatagtcca
    35881 ttccttttgc tagatgtcct tcgtttttga gtaattgcgc ttggtgattt tcttgccgat
    35941 aagtagctgt ttctaaaatg gtaagcggtt ctaacacaac gacgcctagc tttggcatcc
    36001 aattggagct ttgaatgatg tcccctctta agtgatcgaa caaagttagt gattcaaaaa
    36061 tagtgctatc cgttggttct agttgtaaac atagcttggc aatttcagct tctgagatag
    36121 atttattcag ccattttgct gtagcgccaa ttgttgcggc aatatcagcg gtggaacttg
    36181 ccatgccttt cgcgaccgga atagttgact tcacttgtaa agatacttgc gggaggtctc
    36241 ttttagccac accaaaatac tcgcaagtgg tttggaatgc gagccatgct tttgtatgcc
    36301 cggagttatt tagtcctact ttatcagata aagtgacttc ggaataccag ttgattgggt
    36361 atgaaattag cttctctccg cctaaaatcc agccttgcaa aagttcgcca caagatgccg
    36421 gacacctcgc tttaattacc actaaaaatc acctcaagtg cggttaagag ttggcgatta
    36481 tcttctctac ttttcactgc cactcggtaa taattctccg tgagacctcg gtaattagcg
    36541 caacttcgga taaaaatccc ttttaaaagc aatttttttc gtaaatcaaa cggtttttcg
    36601 aggtggaaaa atatgtaatt tacacttggt cggtacacgg taagcgctga aaatttactt
    36661 aagcctcggt ataaaaagtc tcgttccgca ttaatccaat cgaatgtttg tctaatatag
    36721 gcttcatcct ctaatagcat ttgccctgct aagtcagcaa atgtattaat cgaccagggt
    36781 tcgcgcattt gcatgagtgc ttcggctaat aagtcatttt ttgtcagcaa ataaccgagt
    36841 cttaagcctg gaatcgcgaa aaacttcgta aaggcgcgaa taattgctaa atgcggaaat
    36901 ttttctaaat agttgatcat cgaaattgtt tcattttctt ctaaaaagtc cataaaagcc
    36961 tcatcgataa ttaaatatat gtttcgcttt tcacataaat cagcaatttt tatcatttct
    37021 tgttgcgcga tgagttgtcc tgttggatta ttggggttgc acaaacaaac agcttcgata
    37081 tccgtatctt gttcaagcat ttctagtacg atttgcgccg cagcaaaatt ggtttctttc
    37141 gttaactcag cataaacaat ttcggcatca aaaaaagcac gttcgtattc cgcaaaagta
    37201 ggcgcaagta agagtacttt ttgcgccttt gttacttttg ctattccgaa aatcagctct
    37261 gtcgccccgt ttccagggat tacattcgct aggtcgagtt gatgaaacga ggcaattcgc
    37321 gcacggagcg ccaagtaatc tggttctgga tattctacca gtttgtccaa atttgttgtt
    37381 atcgtttgtt tcaaactagc tgggactcct aatggattaa tattcgcact gaaatcgagc
    37441 accatttctt tcgttaatcc gtgttgtttt gctagttcat tatagttgcc accgtgagaa
    37501 gccgtcgtta ttttcacatc aaatcgctcc ttaacttatc gtttgttttg catacttttc
    37561 tacatcgcga gcaatcatta gttcttcatt ggttggaata atgcacactt tgaccgcttc
    37621 atcatcattg ctaattatca tatcacccgc attatttttt gtcacatggc atgttacacc
    37681 aagataactt agctgttctg ttaccatttg gcggattaat ggcgaatttt cacccacacc
    37741 cgctgtaaat aataatgcgt cgcaaccgtt cattgcggag gcataagcac cgatgtagtt
    37801 gcatatttgg ccagtaaaca tacgaagtgt taatagcgcg cgtgaattac cttctttggc
    37861 tgcaatttcg atatctctga aatcacttga aattcccgat acgccaagga cacctgattc
    37921 actagacatc atatgcatca cttcatccaa gctatagcct aattcatcca ctaaatacgg
    37981 gatgattgtc gcgtcaattg taccagaacg tgttcccatc atcaagccag catttggtgt
    38041 aaagcccatg gaagtattca ctgatttccc agcttcaatc gcacaaacac tcgctccatt
    38101 gcctaaatga caagaaataa tttttaattt ttctaaaggt ttttcgagaa cttctgctgc
    38161 ttttccagcc acatatttat gactcgttcc atgaaaaccg tattttcgaa tatgatgttt
    38221 ttcataaagt tcataaggaa gcgcatataa aaagttttct tctggaatcg tttgatggaa
    38281 tgcggtatca aatactgcaa cagaaaccgc atttggcagc aattcacgaa aagttttgat
    38341 tccgatgata ttcgctggat tatgtagcgg cgcaaggttt gtcacagctt caatcccttt
    38401 caccacttca tctgttacaa cacaggacgt aacaaaatct tctccgccat gcgcaacacg
    38461 atgtccgacc cctgtaattt cgctcagatc attgattact tgatgcgcct tcagctgctc
    38521 cagtaaaatc tcgactgctt ccccgtggtt attgattgct cgtatttctt tgattttttc
    38581 attttgaaag gacatgttga aaatggcgtc tggtagaccg attctttcaa ttaagccctt
    38641 aactaaaact tcttctcctg gcatcgtaaa aatttggaat ttcagtgaag aactccctgc
    38701 gtttatcgcc ataattttgt gcatatagct cagtcctttc tcatttttaa aggagtaaac
    38761 aaagccattc ttgtttactc catgcttttt tataataaaa tgttaaatag tccaatggct
    38821 aagagaccac caatgattgg tccgacaatt ggaatccaag cgtaacgcca gtctgaccca
    38881 cttttatttg gtactggtag taaaaagtaa gcaagtcttg gtcctaaatc acgagctggg
    38941 ttaatcgcat aacctgtcgt tggtccaaaa ctcattccga tggcaactac tagaaagcca
    39001 aggattaatg gatttaaacc atctgtaaaa ctgttcgctc caatcataag taaaccaaaa
    39061 atgaaagcaa atgttgcgat aatttcactg attaaattga aaggtgtatt tctaatcgct
    39121 ggtcctgtgg aaaaaatacc atgtgtatca atttctgggg gagtcgcttt aaaatgcgga
    39181 tagtagtgta aaataacgat ggatgctccg acaaatgctc cggcgatttg cgcgataata
    39241 tatggcacca catctgccca agggaatgat cctccaactg caagcgcaat agttacagct
    39301 ggatttaaat gcgccccgct atatgctcct gcgacataaa tccctatcat taccgcaaaa
    39361 ccccaaccaa atgtaacaac tacccagttt gctccttgag ataatgattt atttaaagtc
    39421 aatcctgcta aaaggccgtt cccaaacata attaaaacca tcgtaccaat aaattccgcc
    39481 aaatatgctg acatagttta tcctcctttt taatgtaaat tctaaattat ttgttctaaa
    39541 atttctttta gttcttgatg tgagggtgtc gtaggactag ttggtaagca agcgtctttc
    39601 agtgcattcg ttgcaatttc gtccattttt gcatagactt tttcttttgc tacaccggcg
    39661 tctgtcaatg tgcgcggcat ttgcatatgt tccatcatcg ctacaattct ttcgcgaagt
    39721 aagcggacag ctgtttcgtt cgagtctgat ctggaagcaa tgccacaaat gcgtgccatt
    39781 tctgcatatt tttgttctgt ttcacgattt ttaaatgcgt taaaacgaat cactgcatct
    39841 agtaagatcg cattggctag cccgtgtggt acgtgaaact gtgcaccaag ttgatgcgca
    39901 atactgtgat tcaagcctaa attggcgcag ttaaaagcca ttccagccat agtagaagca
    39961 ttatgcattt tttctcgatt cgctaaatta cgaccatcat cataacagct cgttaagaaa
    40021 cgtaacgtta attgcacact tttttcacca agagcatcgg tataatcgct tgcatcttta
    40081 gagacataag cttcaattgc gtgtgttaag acgtccatcc ctgtgttcgc tgtaatagct
    40141 ggaggtaccg taacaaccag ttgcgcatcc aaaatagcca tatccggaat tagttcatct
    40201 aagaaaagcg gatatttaat tttcgttgtt ggatcagtga taacggttgc ggctgtaact
    40261 tctgaacccg taccgctggt ggttggaatt gcaataaaag tactgatatt gattttttcc
    40321 aaacgtttgg cgaaatagta gattccttta gccgtatcaa tcgctgaacc accaccaaaa
    40381 gcaatcatga cttgcggttg gattttgcct gcctcactaa cccctccagc tactttggaa
    40441 ataggtggat caggtacgac atcggtaaaa atatgcacat tattggatgt atctaattgt
    40501 ccaattaaac cttgaagccc ttccccatca gccaaaaaac ggtcacagat aatccagaca
    40561 tttttatttt taatttcttt taaaacttgt aaactattcg taccaaaagc tacttttgtt
    40621 ttaatttgaa agctgttcat tcagtttgcc tcctcttaac gaatcgaaaa accatctgtt
    40681 aaaacacaac ggcgacgtct agcaaaatga cgcgctgtag tggttccttc tccggtaggc
    40741 gttgcaatag tgaaagtagt gctaccttct cctctaaagc ctaatcccgc aaatgaagga
    40801 ccatttttga caaagatgga tgtttgcata tctcgtgcag ctttatttaa tctagaaata
    40861 ttttgtgaat gcatcgtagc tgtgtgatgc aagccttgct ctaactcaat agcgacatca
    40921 agcgcttcgt caaaattagg aactcttaca acaggaacaa tcggcatcaa taattctaca
    40981 gttgcaaaag gatgtgtttt ttctgtttcc acaataatta aacgtggtga aaaatcacaa
    41041 acaatccccg cttcttttaa aatttctgaa gcactttttc cgactagttt tttgtttgtt
    41101 acgcctttat ctgtgacagc tactttttct agtttttgaa tatcgcttgg attggtcaca
    41161 tgtagtgcac catttttttc catttggaac attaagaaat ctgcgatgct atcaactgca
    41221 acaatacttt tctccgcaat acatagaata ttatggtcaa aagatgcgcc gtctacgata
    41281 tcagcagctg ctttttcgat gtttgctgtc tcatctacaa tagatggcgg attcccggca
    41341 cctgcgccaa taactttttt accggattgc atggcttgaa gaactacacc agggccacct
    41401 gtaataacaa ggagcggtac tttcggatga ttcatcattt cttgcgcggc ttgaatagat
    41461 ggtttttcga ctgtaacaac taaattatca atgccgcaac tttcacggac aatcgtattc
    41521 aacttttcaa tcaaccaaag agaaatattt ttcgcacctg gatgcgggct ataaaatact
    41581 gcattcccag ctgcgagcat gccgattgta ttgcaaatca aggtttccgt tgggttcgtg
    41641 cttggtgcaa cagctccgat tacgccatat ggagaaagtt cgtaaagcgt catgccatta
    41701 tcaccagtag caacttctgt atacaaatct tccacacctg gcgttttttc aatcgctaac
    41761 gtgtttttca aaattttatc tgctacattt cccatacctg tttcagcaac tgctcgcgct
    41821 gcaatggatt caatttctgg ataaagtgct tcgcgaattg ctttcacaac gttgcggcgt
    41881 tcttctaatg atttttcttt atagttattt tgtgctataa ctgctgcttg aacggcctcg
    41941 tcaactgtat caaaaacccc acttttcgcg cctttgaccg ttgtttttac tggtgcatct
    42001 ttttgttctg ctaatttttc taaaagaact ttttttacca gttgttcgag ttctaatgat
    42061 tccatacaga attacccctt ctctatcatt gataatgctt ttttcgcaat gtggatatcc
    42121 tcttccactg atccgccgct aatccccatt ccaccaataa tagctccatc ttttccgtag
    42181 attggaacac caccgccaaa ggttacaata tcaccatttg tcagtgtttc taattgataa
    42241 agtggggctc ctggctgaac tgcttctgtt aatttttctg tactagtttt cattgctaca
    42301 gcggaatatg cttttttcgt tgccagttct gcacttacta aaagagcgtg ctccattcga
    42361 taattaaatc tggcattgcc gtgcgcatcg acaatagcaa gtgttactgg aacgccaatt
    42421 tcttccgata caatacaaac ttggtgcatt aatttttcac aaaaggaaaa agataaatcg
    42481 cttgtaactg acttttcttg gccagtttgc tctaagtatt tggcaacaat gagcttggtc
    42541 gctttatcga gcatttgtct aaaatcctct tctctagcaa ggatgtacaa gaaatccgat
    42601 aagcgattta cgaattttaa taactctttt cggatagctg tttgttctga caaacgaact
    42661 aataatcgct caccacgcct agcaacagtc cttgcgctat gaagaaatgc tcctgctgtg
    42721 cttgatccag gaagaacaaa actatcgact tttggcaact ttgcagtata atcatcaatg
    42781 actttttcaa gttgattgat gtcgttttct gtaataataa ttttgctagc gagggatgct
    42841 tcgtgctctg ttgcaagttc tgcgcaaacg taaaacaact gccgctccac gtttctaagc
    42901 aaagtcttat tctcagctga agtcacgaat ttttctgcta cactaatttc tgcatttagc
    42961 tcatcaaacg agccatacgt ttcgacacgg tcatcatatt ttttcacacg attcccatca
    43021 aataatgcag tcgttccctt atcgccggtt ttggtataaa tactcacgag ttattcactc
    43081 cttacttatc aaaactatcg acaattgcaa taattgccga atcaatcgca ctatttggtt
    43141 ccgcaaaaac acttctagct gcattgccac gagcaacaag cacatactcc ccaattcctg
    43201 ccccaacaga gtcacacgct acttcttctg agcgcacatg ctctccattt gcatcaaccg
    43261 gttgtacaat catcaatttt ttaccagtaa gtgagtcttc tttttttgtg gaaactacac
    43321 ttcctgttat ttttgccata aacataacgt cactgccttt cccgcactgc aatattattt
    43381 ttcgttaaat attcatttgc aagcggtgta ataagctgct ttttatattt gcaaagtgta
    43441 cttccgcttg ggattaccgc gctatcaccg taacaaatca cttgaccatt tgaatgaaag
    43501 agtctctcac ctttatttgt aaaaactggg aactctagct gactaagcat tgtataatca
    43561 agccaaggtt caccattatc atatagttca agctcaatgg ttactccata atctgtagct
    43621 ttttcgaacc aagcagttaa tgattctgct cggtttccac tgagaattcg ctcaagaaaa
    43681 tgtttgttta cttgtgttaa tcgaatcgtt ccactttcta taaaaatcgc aactggatcg
    43741 cgtggaagtt tgctgatagc gatagaagtt ttatttgtcg cacgaagctt caagcgctgg
    43801 acaatgattt tcactaattt ttctatcata gattctcgct ccctgaactc atagcaatac
    43861 caagtggcgt gacatactgt ggataattcg gttgaaaaac aggcgtcttc aaatagcttt
    43921 caaacgtatc tttgaactgg ctatatgcgg aagcaccgcc aacaatgtaa agtggctctg
    43981 agggagattt ctcgagatga acacgggtaa tttctgccat tttttccact actggacgca
    44041 tcacagaaaa atgctcacta gaatcttttt gctcgcgttt attctgctcg gctttttcta
    44101 ctggaacacc gtaatatccc gcaagaacaa gcgtcatatg cgttccccca gttggttcat
    44161 ctgcggtata aattacttca ccattttcaa aaacgctgat tccagttgtc ccgccaccaa
    44221 catctacaac tgcgccatct tgtaatccta gaactgctgc cgctgcggtc ggttcatcaa
    44281 tggtgtacag tgcttccatt ccggcgctct caataacatt ggcgaccacc tttttattgt
    44341 ttcctactgt acctggcggg atggctccag aagcatgtgt taaagttata cctaaacatt
    44401 tttctgcgcg ttctttcagt cgtgtcacaa cctctacaga ctcgcggtaa ttgacaacga
    44461 gaccatcgcg aacagcatct gcgaattcaa acgctccaaa aagtggcaca tcatgttcat
    44521 ctagaacaac aaacacgatg gaggaagtac ctaaatcgac gccaactttc actttctgat
    44581 cagcagaaac tttttgttta atatctttat tcattagcgc tgcaagctgt tccattcgtt
    44641 catttgctgt ttgtagaata tccatttcag cacctcctta tctcgtcacg acttgattat
    44701 ttttgcaaag cacgtaccag caatatctgc tgcatttgct tcatccgtat caatatgcat
    44761 ttctggtata aattgattgt ttactcgaat cgtacaatga tttaaaacaa gacttcgcat
    44821 ttctgaacct actagaacgg atacttcatc gccttgtttc acaccatatt catgcgccac
    44881 actttctggt aaatggatgt ggcgtttcgc gacaatcgct ccttttggta agcagatttc
    44941 gctatgtttc gaaacgagtt tgatcccagg tgtcccgtca atatctccgg aaacgcggat
    45001 tggaatcttc ataccaagca ttcttgcatc cgttttagaa agctctactt gcgaaaactt
    45061 ccgaagtggt cctaaaatgc ggacacgatg cagttcccct ttttctgaaa caacagtaag
    45121 tgtttgttca gcggcgaatt cacctggttg tttgagccat tttttcactt gaataggttc
    45181 gtttggaaaa agttggttat agtcattttc tgttagatgg atgtggcggt tagagactcc
    45241 aataggaatc tctgtttcca caccactaag tttatctgtt actatttgct tgattattgc
    45301 ttttaattct tctctttcca cggcttatag accttttggt agcaacgttt ctacatcatt
    45361 gtgtggacgt gggataacgt ggatagattg tacttcgcca acgttacgag ctgctgctgc
    45421 gcctgcatcg gttgctgctt ttactgcacc aacatcaccg cgaaccataa cagttacaag
    45481 acctgaaccg attttttcat accctactag tgatacattt gctgctttta ccattgcgtc
    45541 agctgcttca attgcgccaa caagaccttt agtttcaatc attccaagtg cattattcat
    45601 tattatttcc tcctcaaatt gggtttactt ctcttcttca aaatggatac aatcttgtct
    45661 tggatcccct tttactcgtg ggcaaagcgg gtcatgacat agattgcaag tcgcttctgc
    45721 cgggacttcg gtttcttcca ctttttctgt ttcaaccatt acttccggct gttctggctc
    45781 tatttcttct tttggccaaa atactgtaaa aatctcttcc cctggtcgag gaatgacttt
    45841 tttcgcaata aaactgtctg aggctattgc ggtttgttcg cctgcttcaa gcgccgcatt
    45901 cacagcagca acatcacctt ccactttcac ggtaatccag ccaaaacctt ttgctttttc
    45961 cgtgtctaca agttggatat tggctacttt tgccattgta tctgctacgg ttatcgctga
    46021 agcaagtcct ttaatttcaa tcattccaat tgcttgatgc attccttcac ctccttattt
    46081 aaaaggtaca cccttgacaa gtcgcgccgc attcattccc atatttcgct ggttttctag
    46141 tgtggttgcg caaaaacgat acgctgaaaa tagtggttta tctgggggta aattacgata
    46201 atgaattact aaatgatcat ttttcagcgt aacccctact agaagcggag aactcgcaga
    46261 tgctcgaaat gctgcttgca cttcgtcttt caaagacata atttctaatt cacatggaat
    46321 gccttcttct tctattccaa ataaaacttg tttaatactg tctggattcg cgtctacatc
    46381 tgcatgaaaa taaattgctg gcttactaac aactggaatc atgccttagc acctccagct
    46441 agaattaagc ctgttgcaac tgcatttcta gggccttctt taccacgaat attcccacgg
    46501 ccagcaacga gtgaataatg agaaagtgca tcggtaatta attgtggaat ctcaaaatca
    46561 agggctgatc ctccaacaat tacgacaaat ggaatatctc gaatattccc agttgggctg
    46621 acatatttta aagcgcggat ggtattcgtt acaaagacac gctccttagc tgaacggcga
    46681 attaacttga ttttttcaat tgatacatcc ccaggtattg gcacaaagcc atcttgtttt
    46741 acaatcacca ctttggcaaa aactgttgga gaaagcggcg tatcaaaaaa ttgcactgtg
    46801 ccatcttcat gccgaatgtg gaaaatactt tcaactttag caagcggata ttttttaata
    46861 tcttcggcta aataacggtc ttcaaggcca atttctgact ggataatcat cgttaccata
    46921 tcgccagcgc cggctaaatg agttgcgata atttctcctt ttccgttgat aatcgaggca
    46981 tctgtggatc cagcacctaa atctaaaatg gcaagtggag tattagttcc cggtgtagta
    47041 agcgctccga gaatggcagc ctctgcttct gcaccaccaa ttttgacgct tacttgcagt
    47101 tcttgttcga tttctgaggc gatggctgcc atttgtaagt gatcactttt taccatggag
    47161 gcaataccaa ccgcttgttc catggaaaac tcacctgcaa gcccaccttg aacgtctact
    47221 ggaacaaatg tatccacagc tagcaaatct tgaataaaaa tatcagctgg taatttatct
    47281 gttagcccag ccatcgtttg gcgcactttt tctagcatgc caccgatatt tgttcctggt
    47341 tctccgctag cattgtcgag ttttggaagt gacataatgg cttgcatgat tttctcagaa
    47401 ccttctgcga cattgacacg ctgcgttctg gatcctgatt gaagttcgat atgccccgct
    47461 ggtattgttc gagctttgac atcaccttct ggcgttttaa tcaccaccgc cgaacgattg
    47521 ccaattaaag ctcgtgccac aggaatgata tttttcgttt catctgaatt caaatgaaat
    47581 actgtcgcaa taccatatgg gttagaaatg gtttcaatga cttttccggg agctgcaact
    47641 tcgacagctg ctaacatatc gaccggcact ttatcaataa aaccaacttc atcgacaatc
    47701 ggaatcttat ggtttagtcg gttatgcacg agaaccccgt catctgcttg aagaattgca
    47761 gctgtgattt gatagccatt ttcgacgtaa gtattaattt gctttgctgc atcttcaaaa
    47821 tcgactgttt tcgggataat cacaatgtag tcctcatctt ttgatttaga tgtaacgtca
    47881 tccaacagca ccgtcacacc tgaacccata ccaagtcccc ctggtgtttt aggattgtga
    47941 ccaatcatcg tagactcagt aatgattgtt tctgtaatag tttccattgc cacatcgcca
    48001 atcactggag tcgcttcatt gatacggatt tcggctaagt tctcggtcgt cgcatttact
    48061 ttctctaaag caagtcgcaa cgctttaaaa atcccgtgaa gattttgttt tgttcctttg
    48121 ataccggttg tgtccgtaat agcactagca acaaacgctg cttccttcga agagtttgcc
    48181 attgcaagtg ccacttccgt tgtagaattc ccgatatcaa tccctgcaat atacttcatt
    48241 catttcaccg catttcctac ataatcgcga gcaaaaggag aattttaatt atcgcctttt
    48301 aatttcttac gctcttgata aagctgtgct gcttcacgaa cataattaga acagatagtt
    48361 gcatgataaa cactctctaa ttcatccgca attgcaagta attcttctct tgaggaacga
    48421 tacggacgca ttgcattata aatttctaaa atgcgttcat ctggaacgat cgttagctct
    48481 gctgcacgtt cgaaattatt cgcgagtgtt gcacgtccgg catctcttgc tacttgtgct
    48541 tgcattttaa gcgtttccgc tgttacacga acatcttccg gtttgattgt gccatctaga
    48601 acacttttca acgtaatgtc gtctaatgat tttgatgtcg atgtttttac aagttctgga
    48661 cgttttgttc cgagtggata atctcgtact gtcagtgtat ctccgctcac tttttgggaa
    48721 gttgttgtgg agactgcgcc actatttact tcttgtaaaa tatttctaac catattttct
    48781 agtgcttctt gattcatcat tttcacctca ctattagttt acttgtaatt cgactgcgtt
    48841 tttcccttga acaacatgtt ttgtttcttt gatatgaagt aaagctgctt tggcttggaa
    48901 tttcggacga gccatttgat cattgaccat tggcactgga tttggtgatt cacctttggc
    48961 atatttcgcc gcgtttttac caattgctcg gtatgtttct agcgtaatta atggcgcttg
    49021 cgggaatagc tctaagttag aaagtggttg taaatctttt tggtggatta atgctgtacc
    49081 gcgcgactga atgccgatac aaatgccaga accacttaat ttgtcgcctt ctactgcaac
    49141 gaaagctacg tcagaagaac ggaatacacg aaccacacgt gcttttaacc cttcttcttc
    49201 aatacctgca atcacttctc gtaaaatttg tttatgtgga acaccgacaa tattttttgt
    49261 ttgatattta ccaaaagctg gcgcgaccgc aataacaact tcatcttttt gtctacccgg
    49321 ctccgcgtcc ccaacttctg ttaaaaagct ttcatccgaa actgcaacac ttggctgttc
    49381 tttttggaaa gaaactttat cttcttttag ctgtaattca tctagtactt ccgagataat
    49441 tccgcggagt actttttcgt taatttcaac catgtctctt aatcctcctt tataaaaaat
    49501 gggaagtagc ttattctaat tcgtttgcat caactgcaac agcgatatct tttaattttt
    49561 cccagcgttc gccctctaag cgataaccag ttccaggacc tgcataatca tttaagtcat
    49621 tgacggaact aatgacattc cagtctttat caatgatggc agatgtatga aggaagtccc
    49681 cagatacacg ttgtttcaac atatttagta cactttcagc aacatcatcg aatccgccag
    49741 cagataacgc tttaacaaca tccagaccag taacaccacg gtccatcatt tcagcagctg
    49801 ctttaatatc ttctaccatg ttacgttctg gcatatcttt acttccacgt gcatacgttg
    49861 ctgcttctac ttccgcatcg gttacttctg gaagacctaa tttatcaaag acagcttgaa
    49921 ttacacgtgc cgctttattt ctaactgcaa cgacttcttc ttcggtaact ggcgttaaac
    49981 caccgtctac ttttaaatca cgttgcaaaa tattgtaatc atcaaagtca tctgcatcaa
    50041 aattggaacc agcaaacata ttgtcatagt taggtgttgc actgtaacca gaggaaatat
    50101 aatctgttcc tggtaaaaat tgcatcaata aacgagctgt acgacgaata tccgagtgcg
    50161 agaatgtttg gtcgttacca gaagctactt ctagatctaa cattacggca attaaattct
    50221 ctgcaagaac cgctctaata ccacttggta cggctcccgg aattccgata caactaatcg
    50281 aaccattttg taacccttga acaccagccg ctttcgtaat gaaaatacag cgagattcaa
    50341 gataaagcat cgatttacct tctgcgtaac ccatttgaac ttcagaacca gttccggatg
    50401 tgaagcgcat tttcaaaccg cgagacgcgt aagcacttgc caaaatacct ttggaccaag
    50461 gtgtatcgtc tccgtctgta aatacaggtt ctgtaccata aacagaaatc gtttctgcat
    50521 aacaagttaa accacgcata ccgagttcta attctgttgc ttcttcgaga gaacattgcg
    50581 ttaatacgcc accacggcca gtttgcgaac ctactaataa gctaagcgcg ttaaaaggtg
    50641 cataacgaac taccgcaacg gttgtttctt gctcgtcaaa accacgaatt gctgcttctg
    50701 ccgcatctgc agcaatttga acaggattat cacgcaagtt tgttacgtgg gcctgagttg
    50761 ttggtgttct gcgagagcgc attttttgca tcgacatcat catttcgaca acgttcattt
    50821 gtgaaactac ttctactatt tttgccggtg tcatagctgt tgtaagtaaa acgatttttt
    50881 cccgtggcac atttgggtcg caaagcatat ttgcgagctt cacagaatcc atttgcataa
    50941 cttcttccgc acgagataaa tcgacgccat atttagcgat gaaatggtca attaagtcaa
    51001 agtcagcgag ttttttgctg tccatttcga ctacttttcc attttctatt ttaatgcttg
    51061 gtttcggatc attcgggctt tccattgcga ttaggccttc ttcaatccat tcttttacaa
    51121 aaccatcttg attgaccggg cgttttgcta attcttcaaa gcgttttgat ttcatcagtc
    51181 gttaccctcc gttctaaatg taggatggac gatcattttt cggttcatcc cctaaagctc
    51241 caagtaattt tttaccaatt tcacgtgctg aaataacagc ttgacggact gcaccagaat
    51301 ctccagaaat acaaagaatc acttcattgg agaaacttgt tccatctgct ggcgaggagt
    51361 atgcaacgac atctacgtta gcggatttca ctgcagtatc tgccataaca acgccaatcc
    51421 cagccggtgc accaaccata agaccgaatg cttttcctac aggtgcgccg aatgctgtat
    51481 taagtgcatg acttgctcgc gctgtatatt gaagttcgat gtgtccagct tcgttgccgt
    51541 aaacatctcc gaaagtttta tctaattcat tcagtgcaac ttctactgca cgtttgacat
    51601 cagaaacatc atcaccacca aagataatta aagaaccgtg acccgcaccg ccttttgtat
    51661 cacgtggtaa ttcgattttt actacttctg tatttgttgc ttttacagct tcatctgctg
    51721 ccataatatg tgggcctgca ccagtacggg ctcctaaaat acctatagaa cggtaagact
    51781 tttcaagctt cattgcttct aaaagttgtc cgtctacatt cgcaatcact aggccgattg
    51841 tatctcctat tgctcttcct acaaattctg ttaattgaac tgctttttca ctcatttgac
    51901 gtgatcctcc atcctctact agtttttccg gggcatcatt aaccgtttcc attacctgtt
    51961 ttagaatttc gtcaattagt ttattttgct cactcatctg acttcaccct cactggtaaa
    52021 atttcttcca catcagtatg cggacgagga ataacatgtg tactcatcac ggtacctaca
    52081 tttcttgctg ctgccgctcc tgcttctgtc gctgctttca ccgcaccaac atcaccacga
    52141 accatgacag taaccagtcc agacccgatt ttttcgtacc ctgttaatgt tacattagct
    52201 gatttaacca tggcgtcagc ggcttcaatg gcgccgacta gccctttagt ttcaactaag
    52261 cctagtgctt cttgcatggg tgtacctcct tctcaaaata agtattttac tctctcagta
    52321 taggcaatcc ggaatataaa tagttgccgc ttccaaatag aaaaaaagaa gacgccaatc
    52381 gtgttttaac acaattttgc gcctccaaaa aaaataacga caaaaagcca tccaataatg
    52441 catggtttgg gctttctctt atgaaattac tcttagcaat atattgttat cttcatggca
    52501 agaaaatgta agcgcattat aaatatgcta tactaagaac gacagaaaca cgccaagtct
    52561 cgccgaaagg ggaatagcta tgttactaca gtccaaaagc aacgaaatgc tcattgaaaa
    52621 agtaatggat gagttctcag ccgcaaccag tttagcctcc gttgttgtag atatacacgg
    52681 taccgaagtt tctagattat gtaactttac tcctttttgc caacttattc gctccaatcc
    52741 caaatatcgc tccctttgcc aaaaatgtga tatgtttggt ggactggaag cctccaaaac
    52801 cggaaagcct ttaatttatc gatgtcacgc cgggttaaca gatttctcag ttcccatcgt
    52861 cgtcgaaaac caacttagcg gatttttact tagtggccag gttatttgtg aagaaagtag
    52921 cgaagttggt aatattcaag cagaagaaac cgattggaaa aatgataaag agctcatctc
    52981 cgcatttcgc tctgtccctg ttttcagctc caagaaaatt aattcttctg ccgaaatgct
    53041 cacgattatc tcccagtatt acttgaaatc cgaaatggaa aaaagccggg aagagcaaaa
    53101 gcaaaaaatt gtttttcatc atgcaaaaat agcgcatcat gaagaaaata aagaaattcg
    53161 gaaagcactt aagtatatcg agaaaaatct caaccgaccg attacacttg atgaagtggc
    53221 aagtcatgtg taccttagct cttattattt tagtaagtta ttcaaaaaag aaatgaatgt
    53281 gaatttcatc aattatgtga accaaaagaa aatgtcactt gccaaagaaa tgttgaaaaa
    53341 tccacgtttg tccattgata atatcgcacg gaacctaggc ttcacacaaa caagctattt
    53401 ctgtaaagtc ttccggaaag agtttgaagt tacgccaaaa ggctaccgcg aaacattaaa
    53461 ataagtttta tctaaaagtc atgttctctt ccctttagga atatgacttt tttgttgcct
    53521 gaaaaacaaa aaaactttca tccgtcatcg aatgagagtt tatgcacagc aaataagcta
    53581 tacgacccgc atacgctttt taggaccccg aaaaagagtt gcttccggct tatttggcga
    53641 gtatcctgac ttggcttcat ccaacaatcg aaccttccca tacgctaaaa acgtacagtg
    53701 gctatctcga ttcttgtcca ccttacagtt gcgggggcag tttcggcatc gcaccgaatt
    53761 cctctttcag aaatgtacat acattccacc aacataagac ctatttaact acctacatct
    53821 taccacaaag tatttataaa aaaagcgttt tcatctgaaa caacaaaaat ctactattga
    53881 ttagaaataa gaaaatgttg agatttgttg tcccagagcg aataacatcc ttgcttaaaa
    53941 tcgatatccc aatattgtgc tatagtttgt ttttgtaaaa aaagcgcaat gactcgtaaa
    54001 acaccgagat gacccacgag caacaccgta tcaagttgct gccatttttc catttcttct
    54061 tctaatatcg caactactcg ctcataaaat atcggaaaac tttccccatt tgaaaatagt
    54121 gccgtttgcc agttattaca gtattcattc cacgcctttg gaaacttagt gctaatttcc
    54181 tgatatgtat aaccttcaaa gtcaccgaaa ttcatttcat tcaaagccgg aaaccgaagc
    54241 gtctttgcgt tacttaaaat atttgccgac tgcttcacgc gcataagatc actcgtaaca
    54301 actaaatcga tcgagtaatt ctccagcttt tcgcggagtt gctccatttg tcgaatacca
    54361 ttttcattta acgcgacatc taactgacca caatattttt tcgctacatt ccagtccgtt
    54421 tctccgtgtc gcacaaaaat aagttgcact taaatcaacc cccaaagcag cactaaacaa
    54481 aataaacaaa taagttgtcc catttgtcca cccgcaccaa gcgtatcccc attcatacca
    54541 ccaatccgtt tataaacaaa tgcccggtaa ataatcgtaa acagaatcac gccagcataa
    54601 gcaatgacgc caatataaga gaaaaacgcc cctaaagcaa ctaacacaat cacctgcgca
    54661 atcacaaccg gccaccaagg aactcctaga aaaatcgaac ctagtccttc tttcgatccc
    54721 gcataggtca tttttgcaaa aagcaacatt gtcactcctt tagcaacaat cggtaaaacg
    54781 aaaaataacc aaccaatttg ttgcgtatct ggaacagata ggaataaaga gccataaaaa
    54841 agaaaataaa agcaaatcgc aatcacgcca ttcgcgccta cacgactatc tttcataatt
    54901 tccagcatac gctctctttt ccgagaagaa aaaagtccat ccgccgtatc cgccagtgca
    54961 tcaacatgaa aaccgccagt aatgataatt tctgcaaaaa gccccgcaat aatcgcaact
    55021 ggtaagggca tcaaaagagc caccaaagta aaaatgagcc aattccaagc gccaataatc
    55081 accccgacaa acggcagcaa agcactccct tttttcaagt tgatttcatc catatttatt
    55141 tggacaggta acggaattcg cgtaaagaat tgaattaata aaatcaatgt tttcatatta
    55201 cttccacctt ttcggaatgc cactcacgac aaaatagact tcttctactt ccgttgcaat
    55261 ttgctgatta atacgaccaa taatgtctcg aaagacgcgt gttaacttgt tttcaggtac
    55321 aacccctaat ccgatttcgt tcgtaacaaa aataaatttg gctgaggatt gctctcctgc
    55381 ttttaaaatt gcgcgaactt ccgattgaat tcccgcttct acttcatcag caatctcatt
    55441 tgtcaactcg cgctcaccaa gcaacgaaaa aaacaaatta gttactaaca tcgttacgca
    55501 atcaagcatt attacatcat atttatttcc atttcgctcc aaataagcag caatcccttt
    55561 aaatgcttca aaagtatccc agtgttctgg acgtgttgct tgatgttttt ttatcctagc
    55621 ttgaaactct gtatcatttt gaaatgcaat tccggtcgcc acatataaaa cacgattata
    55681 tttggtagct tctttttcag caaaactact tttaccactt ctagcgccac cagttacaag
    55741 catcatctca ctcatggtaa ttcctcaact ctcctaaaca tttagccgct ggaaagttct
    55801 gctcaaatgc ttttacttca cttgctttaa ctgctactaa aataacagaa gcaggccccg
    55861 cagttttatt catggtcgct tcattaaaaa cgtcactggc tttgaaagta caatcattaa
    55921 gccgtgctaa agtatttgcc tcataagcca ttcctttcga cccaaccggc acaacttcaa
    55981 gcacatcgct atgctccacc aattttttca ctaaatgata atctggcatc tccgccatcc
    56041 tctgcaaaac ttctgctcca acaatcggtt cgccaaatgc aaataagacc gcagcttcgt
    56101 gcacatttat aagcttaagt gcagctttag tcgcaaaacc agttacaaga acgcctacac
    56161 tagtttgtgt tacgttcata ttttcttcag tacttccatt taattcaata tgacctaaat
    56221 cagccttaat aagttcgtct tttagccctg cgataacacg tttaccggtc ggctccattt
    56281 ccgctccgat aacatcactc acagccacta ctacagcacc tgaagcaagc atttctagta
    56341 gagcgactct caaggtcaaa cgagctgtga cttccggcgc gactcttaaa ccatcatgca
    56401 ctttctcacc aaacccagcg ctaatatcac agctcgtcaa aacacagcca ccaggcacat
    56461 caattacaga taaatccctc acttgaggca taaaataacc cccacttagt taaaattaat
    56521 cttccaaata tgcccgaagc tcttctattc cagtttcctc taacgaagaa atataaaaaa
    56581 tatgcttcgc gccagccatg cgtaattccc gctctgctcg ctcgatgtct ttttctgatt
    56641 ccgctaaatc cacttttgta acaatcccaa taaccggttt agcaaaaata ctggcaaaca
    56701 tcggtgaaaa cgtctgcttc ttctccgtta cactctgtaa aattgcgatt acagatgcat
    56761 cagccgcagt cacagtgagc gcgctgtaga gttgtctatg ctgtacaaat tcacctggcg
    56821 tatcaatcat ttcttgaaaa tactccacag cttgtgtttt tttatataaa atatcatatc
    56881 catgtaattt ctggcacagc gttgttttac cacaaccaac tgaacccatt accatcattt
    56941 tcttcaagtg actcagctcc tagtgatttt tggaatagaa aagtccaaaa tctcatgtaa
    57001 tgaataaacg acttgttgta aagctgattc aacagaagaa acatcacctg taagtacaac
    57061 ggacccacta aaacgatcaa taaagccaat tcgtacgtca cctgatttag ttgcaatgtc
    57121 actcgcaata atggaagcct cacttggcgt aatcgttaaa attccaatcg cacttgcgcc
    57181 ttcttctaat cctaattttg tataaatatc acggtttggg ttggcgatta aatgcgccag
    57241 cgtcacctgt tttcccggta catattcttg tattacacgc tctttattat catcaaaact
    57301 cattttcttc actcctcttc tagacaaact atctcaaaat aatcctatca tatttaagcg
    57361 ccactatttt gtcagattgt tcaaaaggca cgcaaccaca gtcagtgcgt acctttctca
    57421 aaaactctat gacaatatat tgttatcttt ttaatagatt aaactctcaa aaacttcttt
    57481 acgaggtctt ggtataacta ctttattaat taaaagtgct tcttctttgg ctgccgcaag
    57541 tccagcttcc acagccgctt cacatgctgc tgtatcacca gttagaacaa cgaaagattt
    57601 accagcaatc cccgttgcca accgaatatc cattaactga acatctgcag cttttactgc
    57661 ggcatctgca gcaataattg atcctgaaca ggaataatac tccataacac caactgcatt
    57721 catctcatct ggcacttccg ttttgttaat tgctttaatt acttggtcgg acacgcgagg
    57781 aatgactaaa ttcccgacga tatttgccgc accaatcttc gttccagctt caattgattg
    57841 agctacagaa tctactgtcc ctgcaattaa tatataatac ttcccagggc agcttgcttt
    57901 agcataaatc aattcggagt tggccgcttt tagcattgtg tcaaccgcct cgatgccttt
    57961 cgaaatacta tttaattcga gaaatcctaa tgtatccatt ttcatgacat caccttctta
    58021 atatgaactt gttcttcggt tatacgaata atttgaccgt caatacttgc atggatattt
    58081 gccccaagag acgcatcagg aattttcgca attaaatcac cttttttcac gatgtcccct
    58141 tcacttacta ctggaataga cggcgcgcca atatgcattt tcgttgggat aaatacttca
    58201 tctacatcta gataatgcat tgtttctaaa tgaacgtctg catattgttg taagcccatt
    58261 ttgattagaa tatttttggg agcaattgat ttatattcac gcatcggatc aggcgtaaat
    58321 tcttttttat cagtttgata acgaacgcct tgttttaaaa gttctttttt cacatgaata
    58381 tttacttggc gcggtgagag ccccatcgga caagcaatta cctcacaaat gccacattca
    58441 cagcaaatca tcgcttcttc ccaaatcgga tctggtttaa tatccgttat atcttctgca
    58501 accgcgaaat ggcgcataac tttatgcgga tgaatatcgt gacctaattg ttttcttgga
    58561 cataaatccg aacaaagtga acactgaata caagccgatt ttgtttcatt aaaaatttgt
    58621 tccactgttt ggtaatgtag cttgtgcaga taaccagtat cctctgccac aatcaaaccc
    58681 gaagttgttt tcgttactac tttttcagca atggtagact tgtcatttaa tttccccatc
    58741 attggtccac catctaaaaa taaatactcg tctaaattag ttccaccagc tgctgctaaa
    58801 cagacttcaa atggcgttcc aactgggaca tctaaaagtt tcggctctcc aactgctcca
    58861 gttactgtca gctgtttacg aacaactggt gcgtcatctt gaattgcatg aaagacgttc
    58921 cacattgtcg agacattcga tacaatacag ccaaccatta gtggaatacc gcttggtggc
    58981 acaacgcgtc cagtcacttc aaagaccatg acttgctcgt caccagttgg atagacatta
    59041 tccatctcat gtattgtcac acttgcatct agttctgtaa ttgctgaccg taaagccgca
    59101 atttcctctg tgtaataccg ttttgttgca ataacggcaa attctgcacc tacttggctt
    59161 ttaaccattt caattgcttt aatcgtttct actgcatggt ttctcatgac aaaatgatct
    59221 gtttttagga gcggttcaca ttccgctgcg ttaataatta agtattccac ttcaccgcta
    59281 aatttggcat gggtcggaaa gcccgctcca ccacaaccaa caactccggc atctttaatc
    59341 ttttctaaaa tggacatttg gctcaacacc ctcttaatag tttttcagta tacttcaatg
    59401 atagagcgtt tacattccaa aatctatagt aaaattttgc aacctaaaag agagcaatat
    59461 aatagaataa aaaacctact aaaattagca ggttttatca tttttattac gctttccgat
    59521 ttcttctgtt tctaaatttt ctactaactg gcgtacttcc cgttttactt tcttggcgta
    59581 tccaggattc ccgcctcctg ttgaaatacc gactagcaac tcattttttg atacagttgc
    59641 catattgaaa aaatcggaat tcttttgttc agtcgtatca ttcactagtt gttctggcaa
    59701 gcgatctttc agtaccattt gatttacttc tgggttattc gtacaaataa atatcagaaa
    59761 agcaccaatt agatgttctg cccggtaagc ttcttctttc acctgcactt gaagctcttt
    59821 aatctctggc aaaacgtcta acccgacaat taaaatatca gctccggtgt gaagcaaccc
    59881 ctttacttta cgaagcgcca ccttcccacc gccaattatg acaacccgtt tccctgtaat
    59941 atcaagcatt atcggatatt tcatcatcaa gcccccgcac atttttcttc attttaacac
    60001 ataattgaaa catttttcgg gtatagttaa aataattcaa aaggaggtaa aataaatgtt
    60061 taatcaagca aaacgaatct ccacattttt cacgtttaac ggcaatggcg aggaagcatt
    60121 taatttttat ttagacactt tccccgatgc gaaaaaaatc ggactaactt actttacaaa
    60181 accagagcaa ggcggcgata ttggcaaggt tctcaatgct acttttgaaa taaaaggtgc
    60241 atcattcatg attatggaca tgactaacaa cgcctcccct gactttagct gggccactac
    60301 aaccctttat tttgcagata cggaagatga atttgacact ctttttgaaa aactggctaa
    60361 agaaggtaca gttatgatgg ggccagaagc agtagaagcg cttcgaaaag tggcatgggt
    60421 tacggataaa tatggcatta cttggcaact cgcattcgta taaaattaag aagagaaaac
    60481 gccgtcctaa agcgttttct tttttatatt caaaatgttt gaccattttc gaccattatg
    60541 ataagatacc tgtattacaa ataaactaag gctttttaag gaggaatttt ttcatggcag
    60601 agaatacaaa gaatgaaaac atcacaaaca tccttaccca aaaattgatt gatacacgca
    60661 cagtgttaat ttacggggaa atcaatcagg agttagccga ggacgtttct aagcaacttt
    60721 tactacttga atctattagc aatgatccaa ttacgatttt tattaatagc caaggcggac
    60781 acgtcgaagc tggtgacacg attcatgata tgattaaatt tattaaaccg acagtaaaag
    60841 tcgttggaac tggttgggtt gcaagtgccg gcattaccat ttacttagct gccgaaaaag
    60901 aaaatcgctt tagccttcca aatacgcgct atatgattca ccaacctgct ggcggtgtcc
    60961 aaggtcaaag cacagaaatc gaaatcgaag caaaagaaat tatccggatg cgcgaaagaa
    61021 ttaatcgcct aatcgctgaa gcaaccggtc aatcatacga aaaaatctcc aaagatacag
    61081 accgcaactt ctggctttct gtaaatgaag caaaagatta cggcatcgta aatgaaatca
    61141 tcgaaaatcg cgatggctta aaataaaaac caaaaggttc acttacaaaa tgaagtgaac
    61201 cttttttatt ccctttatgg aggacttaaa atgaaattaa cgaaagaaaa ttttcaaaaa
    61261 cttgatcaaa ttcatttatc actcgaaaac cgtcactcca tgtccgaaat tatcgctatt
    61321 ttaagcgaat cttatattga aatcacacaa aacggtgttg ttaaagactt ttcctattat
    61381 aaatcgctaa caacacttgg caatagcagt ttagaaatca tggattatga cataaaaatt
    61441 ttagacgaaa cgaaggtctt atcctattat aaattgaaaa acacaagtga aaatagctat
    61501 acaatgcgaa gcaacgtctg gattatcgaa aatggctcgt ggaaactcac ctttcaccaa
    61561 ggtacaaaaa tcgtatagaa aaggaatttg actaaaagcc aaattccttt ttttattttc
    61621 gttttcgtaa taaaatcacg ctagaaacag ctagcattaa accactaact aaactagaat
    61681 gcattccact atcccctgtt ttcggtaaat ttctattatc tttagctact atcgtattaa
    61741 cagaagtagt ctgtttcatt aaagtttcag taacttgaag aactgatttc actggatcaa
    61801 ttggatttac ttgatttgac gggtttactg gagtgactgg gtctactggg tctactgggt
    61861 ctaccggatc taccggatct accggatcta ccggatctac cggatctacc ggatctaccg
    61921 gatctaccgg atctaccgga tctaccggat ctaccggatc taccggggta atcggattaa
    61981 caggcttctc caacagtggc tgcgtaattt taccagaata cgttgttgtt aacgaaccaa
    62041 ttgctacggg taaattatac tcgtaattta gaatataatt actttgcaac ccttcccatg
    62101 taatctcgcc atttgcataa atacccgcat gacttacttt tgtcggttgt actctgctgc
    62161 cattttcatc aattactgga gcgggtaaaa tcaatggatc atctacctca accgcatcta
    62221 atacacgcgt ttgattcgct agttctaacc tagttaaatt ggtcaaattt ttcagggacg
    62281 aaatatcaat tatttggttg aaactaagag tcaatgtctc gagtgtagtt gatgttgcta
    62341 aactactaat atcgctcacc tgattcgctt ttatatcgaa gtcttcaagg ctagtaagat
    62401 ttttaattac actcacatcc ttgatttgat tcccaaataa acttaaacca agcagtttgg
    62461 acatattttt gagtggagta atatcactaa tattatttct ccccgcccaa aacatcagca
    62521 tattagacag attttcgact ggcgataaat cacttacctc acagtctctt atagtcaaaa
    62581 attccagttg tgtcatgttt ttaacggcac taatatccga aataggattg gcgctaacat
    62641 tcagttctaa catgttcgtt aaatttttta tcggttcaat cgtttgtaag ttattaaact
    62701 caaaatcaag tgacattaat gctgtcaaat tcgcaattgg ggttaaatca cttatttgat
    62761 ttcttggcat ctgaatgatt tctagttgcg ttaaattact taatggccct agatcactca
    62821 cttggttacc atagccaaat acttgtgtga gattttttaa atattctact ccttcaagac
    62881 tttgaacacc ttttgaatca aagtgcaaag atttaactgt attcaattgg ttttgcgtaa
    62941 ctgggctagt tgcagaggga agctttaacc aatttgctac aacttgcgcg agctttggat
    63001 caggaaaaat ttcattaatc ggctttgaat ctgtaagcga atagactgtt tctgcttcga
    63061 ctgtatgtgg cttagtaaaa tccccaatac taaatacaca agcaaagctc aaaagtaaac
    63121 tggttgtaat cttgatagtt tttttcatag tatcctcctt gattgtcaac caacataata
    63181 ctctgtttat ataatcaaat caacagaata aggaggcaat ttttcttgtt tcaggaaatt
    63241 attttccctc cttttattcg gaagctaatt cccattcacc cttggtaata ttgctttcac
    63301 cgtacttatc atacccattt atttttcatt aaaatatgtc taaaaaatga accaatataa
    63361 gaaatcagct tttttaacta ctaaaaaagt aagttaggct tttaaatcta acttacttgc
    63421 tcatttttta taattcctct gcatttggct ctcttacata ttttttcatt gccaactcac
    63481 aagcaccaaa cagtttgaaa ttttgtcgtg cgtctaataa cgttaaacca ttgttagcac
    63541 tagagcgaat atttaacaaa tcttctatcg agaaaatatc ttgatagtga gaataaatct
    63601 cttccttatc aaagacaaaa taaccttcat cttcccagaa acatatcgga caaatctcaa
    63661 actcgcctct aacatcaatt gttaaacagt tacaacatgc acatctttct ttactcattc
    63721 aaaacctcct tctgcttgag cactccattt gagcaccatc gtccattctt tttcttctat
    63781 aacttcgaaa ccagctttca cgagaaaccc aatgcctgct tcatttttcc gtctaacttc
    63841 atccaacata actattccac cgcaatcagt ttgaaaaaaa tccaagaata attgcaaagc
    63901 tttttgagcg attcgctggc cccggtaaca tgcagccact ttaatattta aatgagctgt
    63961 ccctttttca aaatcacgaa agctaacttc accaacagat tctatacctt tttttataat
    64021 aaaataagca ttgctcgctt gagattttga cttgagccag tccattcgca tttcttcagg
    64081 aaaagaaaat ggcccaccga gtacttctgt cgttgccaaa tctccccata accattcaat
    64141 gaaggaaaag tcagctgagg taggttgttg taaagtgatt tccatgaaat tcctccttgt
    64201 ttacttggta gttaaaagtt cactaatgaa cttgatgatt gcattttaca atgttatcat
    64261 ttggtgcaaa ttgggaaagt ttttaattag taccactaaa gccatcaaat cgataaaata
    64321 ttttgagcgg taaggccgtt ataattttca ttaaaatcat caaacgacat ttccccgttt
    64381 atatctaaaa ccgcataaat ttgctttagt tcctcttctg aaaagatgga tttaggagaa
    64441 actaactttt tcgaatatcc agcaattggg gtcattccta atccagaata aggtagaaat
    64501 gactctttcc cactacttct cttcaaaaat tctttcgcag gcatcgtttt gcttccaaat
    64561 ccccaatcaa atctaacggt aatttcctcc tcgtactttt taataatatc cctatctggt
    64621 tcacctattg cttgataacc ggcatacgtt gtagacactc cattaaaaga aaaattcatt
    64681 ggaaaggaaa tatccgcttc ttccaaatct accctaccaa taatcggaaa atccccacgc
    64741 gacactaaat catccataat aaattccgga tttaagagct cctgtttttt caaaagtgat
    64801 aaatcaactg tattttgttt acttgtatag ttaaagctac gaataacaag cggaactccc
    64861 atcatcaatc ggaggtaatg cgagctatct tgaggcatta ttttttgttt ccgaaacgcc
    64921 tgaaaacaac caatcacaag cccaaaacca tattcatttc caattggata agaaaaaatg
    64981 gaaccttgct gaatggtttg tctcgttttc actttgagct ttgctttatc taatatgctc
    65041 aaccaatcac ttccataatt tgcagcaatt ttttcttgta cattttcttt cgtgaaaagc
    65101 atcccttcct caaaatagat attttcaaaa tgctgaacac ctagttttaa ctctattcga
    65161 tgactgattt tatttatttt caaccttaat tctttggttt tagcttttaa aattgttttt
    65221 gtcgtcaatg cttttggttt tgcatttttt cggccaacta attcatttgt atctgtaagc
    65281 tctagattat aatcgatttc tttgtagcaa tcagcttgat taagaatcaa ttttatcagc
    65341 acatgatttc tgatgattac ttctgcattt tccacagtca atttctgatc attttcatta
    65401 atttgatgta atccgatcac ttctcgtatc tcattattaa tcatctctac tcgcctttcc
    65461 tgttgtattt ataacttctc tcgatatcca tccacttttt tagccacaaa ggaaattgtt
    65521 tctgccaaat ctttctgttg ctcgtacaag tttttcatat gattatttaa aatttctatc
    65581 cgatttggaa gtgtcatgtc tccttgcttt tgtaatgcag caaaattttt aatgtttgtt
    65641 attgtcatcc ctgtttgctt cattttagta aaagctgtac ccagcaataa tcttcttccg
    65701 tataaacacg ataatttttt tcatttctag caggaattaa taattcttct tcctcgtaat
    65761 atcgaagcgt atcaatcgaa agccccgttt taatggcaaa atctttaata tacatctagt
    65821 tc
//
LOCUS       DASDXX010000003        41702 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.003, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000003 DASDXX010000000
VERSION     DASDXX010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 41702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41702
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.003"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..223)
                     /locus_tag="U0280_000147"
     CDS             complement(<1..223)
                     /locus_tag="U0280_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2270112.1"
                     /translation="MDKEIKYAFVTGASGEIGQAICLSLAKAGWNLYLHYYQNKQAVE
                     KLLPQLLAEDVDVILIQADFDDLTSLTEME"
     gene            complement(315..1601)
                     /locus_tag="U0280_000148"
     CDS             complement(315..1601)
                     /locus_tag="U0280_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM2270113.1"
                     /translation="MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYG
                     AIDNNFVPIGETEFTKVPDGIAHFLEHKMFEKEDGDVFFKFGEKGAFTNAFTSFTKTA
                     YLFSSTSRVEENLETLIDFVQEPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIE
                     NMYHNHPVKIDIAGTVESIAEINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDLIR
                     ANQAKKEFAEAAPIKRHFPEEPKTVAVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAL
                     KQEIIGDVALEMLFGTTSDTYLKLYNEGIIDDTFGYDYTLQDSFSFVLVGGDAKDPDK
                     QTEKIKEAMKEAAKNGLNESDLALVKRKRIGQFLRSLNSPEFIANQFSQYVMKSASLF
                     DILPLLEEVTLEEVNAFVKNLDQEERTTSFQLLPEQ"
     gene            complement(1582..2874)
                     /locus_tag="U0280_000149"
     CDS             complement(1582..2874)
                     /locus_tag="U0280_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM2270114.1"
                     /translation="MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKR
                     ALLSILLETNSEKYPTQTAFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVS
                     DGIHILEDAFAFIEQALFHPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRL
                     VEEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPL
                     IEKMAFAPRAERKGVFYTKEAPNVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQ
                     LANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAGIDEVNYEQALKIIE
                     EQVVAMKQGNFTEDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRKANLDLENWIA
                     KIKQATKEEVVAVINKIKPDTIYFLSKGGEELHGKNHI"
     gene            complement(2991..3941)
                     /locus_tag="U0280_000150"
     CDS             complement(2991..3941)
                     /locus_tag="U0280_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270115.1"
                     /translation="MTAILATIISSTLLMAGPLIFTALGGVYSERGGVVNIGLEGMMV
                     MGAFSAIVFNLTFQDTFGNLTPWISLIAAMVVGGLFSLVHAVATINFRADHVISGVAI
                     NFLATGLSLFLVKVIYDKGQTDQIKYYFGKPDIPVLSDIPVIGDIFFKNIPVMSYVAI
                     LFAIASWFIIYKTRFGLRLRSVGEHPLAADTMGIKVRWMRYQGVIISGILGGLGGAVY
                     AQSFTLDFGHATISGQGYMALAAMIFGKWNPLGAMGAAIFFGFAQCLAITGGSLPFFK
                     DIPDVYLQIAPYVLTILALVGFIGKSEAPKADGVNYIKGK"
     gene            complement(3938..4990)
                     /locus_tag="U0280_000151"
     CDS             complement(3938..4990)
                     /locus_tag="U0280_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270116.1"
                     /translation="MSKRLQALVIPVTAVILGLICGAIIMLIFGYDPIAGYSALIQGV
                     IGENFYIGETIRQATPYILVGLSVAVAFKAGLFNIGAEGQMLMGWLGSIIIAVNFDGL
                     TKWIHLPLAIITGMVFGALWAFIPGILKATLRVNEVIVTIMLNYTALYIFNYVVQNLL
                     TDGLDKTQEIHASASLQSELLQSLTDYSSLHWGILIALGFALIIWLMLNKTTFGYEIE
                     AVGFNENASQYAGMSVKKTIIFSMVIAGALAGLGGVMEGLGTYGTAYVLTSSPGIGFD
                     GIAVALLGGSSPIGIVFSAILFGALKVGALNMPAVAGVPNELVNVIIALIIFFVASSY
                     IIRWAMAKFKKGAKAE"
     gene            complement(4983..6524)
                     /locus_tag="U0280_000152"
     CDS             complement(4983..6524)
                     /locus_tag="U0280_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270117.1"
                     /translation="MDFVIEMLGIRKEFSGFVANDNITLQLKQGEIHALLGENGAGKS
                     TLMNVLFGLYEPDGGEIRVRGTKENINSPNKANELGIGMVHQHFMLVDKFTVAENIIL
                     GKEPSKLGVIEKKKAIEEIKEISDRYGLRVDPNAVVRDISIGMQQRVEILKTLYRGAD
                     ILIFDEPTAVLTPQEIKELIQIMRSLIKEGKSIILITHKLKEIMDVCDRVTVIRRGKG
                     MGTVNVPETTPQDLANLMVGREVVFTTEKIDAKPGKDVLEVKDLVVKESRGVESVRGL
                     NLTVRAGEIVGIAGVDGNGQSELISAIAGLSKVTSGSILLNGEHIENKKPRKITEAGL
                     GHIPEDRHKHGLVLEMSLGENIALQTYYKKPISSKGFLNHKAMYDFARELIEEYDVRA
                     SSEYVAAKSLSGGNQQKAIIAREIHRNPDFLIAAQPTRGLDVGAIEFIHRRLIEQRDN
                     GKAVLLMSFELDEIMNVSDRIAVIYEGKIVAIVDPKETTEQELGLMMAGSSKQEAEMG
                     EKEHV"
     gene            complement(6956..8029)
                     /locus_tag="U0280_000153"
     CDS             complement(6956..8029)
                     /locus_tag="U0280_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEM2270118.1"
                     /translation="MKKRTFALALSMIIASGVILGACGSSSDDKKSSDDKSSKDFTVA
                     MVTDTGGVDDRSFNQSAWEGLQKFGKANDMEKGTDGYNYLQSASEADYKTNLNTAVRS
                     DYDLIYGIGYKLKDAIEEVSKQKPKNQFAIVDDTIDDRDNVVSIGFKDNDGSYLVGVV
                     AGLTTKTNKVGFVGGVKGTVIDRFEAGFTAGVKAVNPNAQIDVQYANDFAKADKGQQI
                     ASSMYSSGVDVIFHAAGGTGNGVFAEAKNLKKKDPSRAVWVIGVDRDQWDEGKVTAND
                     GKDYNVTLTSEIKRVDIAVEDLATRAKAGDFPGGTKIEYGLDKDAVGLSEHQDNISKD
                     VLAKVEEYKQKIVDGDIKVPEKP"
     gene            8382..9221
                     /locus_tag="U0280_000154"
     CDS             8382..9221
                     /locus_tag="U0280_000154"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM2270119.1"
                     /translation="MAKIGFIGFGSMASLIATKIIETEVATPEELILYSNSKNEHFNQ
                     FYNKYPTAKLADNEAEIFTKADHSFVCKLPLAVLPLMKDCAAVLTPDRHVISIAAGVS
                     TSDIIEITPGLQVSKLIPSLTTAVNVGTTLIAHADTVNQANTSWLETTFEHFGHVMTI
                     REENMDIASDLTSSSPGIIAAIFEQFVEAALRRSSLSDAEVFQMINFALAGTSKLLVE
                     EDYTFSGLIERVATKGGITAEGIELSEEQLPQFFDELLDRTQTKYASSKKEIQAQKQD
                     LLL"
     gene            complement(9255..11528)
                     /locus_tag="U0280_000155"
     CDS             complement(9255..11528)
                     /locus_tag="U0280_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM2270120.1"
                     /translation="MATQKKKTSGRKKSSTRSKKKQSASFRLEITGVILIAIGVIGLL
                     QLGFVGRGFFALAEMFVGLLSYVLLAGSVILGGYMVIRRKMPHLFSKRLVGIYLIVLG
                     FLTYIHMYFIIHNLGANASVISSTWKLVLENLFRPNQVGFVGGGMIGAVITSVTYFLL
                     DRLGTNLIAVLLIIYGFSLVSGISIRQFFSKIAEFVRYLFAKGKVATEKGKEVKAKRD
                     KKKAEKIVEVEPDEVLDVVDPAQEEKAPPIISNFSSKVEQEKAPVEEKTTKQEQDLEM
                     FQQESFENEIYQLPPVDILAPAKVTDQSKEYDQIKVNAKKLEDTFESFGVKAKITQVH
                     LGPAVTKYEVQPSVGVKVSKIVSLSDDIALALAAKDIRIEAPIPGKSAIGIEVANQNV
                     AMVSLREVLENNPKNNPDEKLQIALGRDISGEAMMASLDKMPHLLVAGATGSGKSVCI
                     NGIITSILLRAKPHEVKMMMIDPKMVELNVYNGIPHLLAPVVTNPKKAAQALQKVVAE
                     MERRYDLFSHTGTRNMQGYNDYVKKHNELNEEKQPELPFIVVIVDELADLMMVASNDV
                     EDAITRLAQMARAAGIHLIIATQRPSVDVITGVIKANIPSRIAFAVSSSIDSRTILDM
                     GGAEKLLGRGDMLLLPVGSSKPTRIQGAFLSDAEVEDVVNYVISQQKAQYSEEMIPDD
                     IPEVEGEVTDELYHEAVELVVEMQTASVSMLQRKFRIGYNRAARLIDEMEQRGVVGPH
                     EGSKPRRVNVEINPEHE"
     gene            complement(11679..12605)
                     /locus_tag="U0280_000156"
     CDS             complement(11679..12605)
                     /locus_tag="U0280_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2270121.1"
                     /translation="MSYVQINESFMEELALKKVKQERRKRLKWFVYKFLMITFGAILM
                     GVGLELFLVNNRILDGGVVGISIIISQLTPLPLGVLTFVLNIPFFIIGYRKIGKVFAL
                     FTLYGIAVMSIVTLVLHDMDPVTDDLLLATVFGGMTLGLGVGLVIRNGGALDGTEIIS
                     IIINGRTPFSTGQIIMFINIVIFIVAGLVFNWDRAMYSLITYFLAYKVIDIVIQGVDE
                     SKSAFIISRYYEEIGAEIMEQLGKGVTYLDATGGYSGDVRKVVFVIVSRFEEVKVKAI
                     LDEIDPDAFLAVGGSMSEVRGGKLMNTKTPHL"
     gene            12856..13815
                     /locus_tag="U0280_000157"
     CDS             12856..13815
                     /locus_tag="U0280_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HEM2270122.1"
                     /translation="MSDYQVLLYYKYTTIDDPETFAKEHLAACKEMELKGRILVATEG
                     INGTVSGTVEATNKYMDYMANDARFADMVFKIDAADAHAFKKMHVRPRAEIVSLSLEE
                     DVNPLEVTGTYLEPSEFREALLDEDTVILDARNDYEFDIGHFRGAVRPDIQNFRELPG
                     WIEDNREQLADKKIVTYCTGGIRCEKFSGWLKTAGFDDVSQLHGGIATYGKNEETKGE
                     LWDGQMYVFDERIAVPINQVNPTIVGKDYFDGTPCERYINCANPYCNKQILASIENEK
                     KYLRSCSHDCRVHPANLYTKNLSKEEFTERLQAIDETLPEMVQ"
     gene            complement(13855..14931)
                     /gene="fni"
                     /locus_tag="U0280_000158"
     CDS             complement(13855..14931)
                     /gene="fni"
                     /locus_tag="U0280_000158"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEM2270123.1"
                     /translation="MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPR
                     YNVKDIDLTTTIVGTNVPFPLYINAMTGGSRHTKKINAELAEIAREVAIPMAVGSQSA
                     ALKNSSLIDTYKIVREINPNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQEL
                     VMQEGDRSFSHWLTRIEEYVKLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKG
                     GTNFAQIENDRRRDQAYDFLLDWGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVK
                     ALALGADSVGMAGQIIYSLKKEGVTKTIEKLELWKEQLRGLFVLANAKNISELKTTPL
                     IISGELAKWGALREIDLVKLANRK"
     gene            complement(14960..15307)
                     /locus_tag="U0280_000159"
     CDS             complement(14960..15307)
                     /locus_tag="U0280_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HEM2270124.1"
                     /translation="MTKWNVYLTKGEYEPWWFFEEWETSIQADFAFSDKEAAFLKYQE
                     LADELLRNYPNHQTKKDCLLAAWNEEEVEYCEDCEDDIQTFHGLILFSDGEVYQPTPE
                     EKETIFKPVLTFA"
     gene            15447..15728
                     /locus_tag="U0280_000160"
     CDS             15447..15728
                     /locus_tag="U0280_000160"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEM2270125.1"
                     /translation="MARDTAILRVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSV
                     EIHAIAEEENLNKFIDAIKKGPSPGCRIEHVYIYKGAPVEERKTFDIVY"
     gene            15814..16095
                     /locus_tag="U0280_000161"
     CDS             15814..16095
                     /locus_tag="U0280_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270126.1"
                     /translation="MISILQILLEPEFISLTVTFLLMLTIFSYWSAITLLKPKMVLPA
                     DAICLKLVKISLRAQIYITTPNFVINWLAITRKCSAITDDEDSFSFSNV"
     gene            16132..16959
                     /gene="yidC"
                     /locus_tag="U0280_000162"
     CDS             16132..16959
                     /gene="yidC"
                     /locus_tag="U0280_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM2270127.1"
                     /translation="MKKKNIILISVLLGALLLLTGCSMDPSQNTDGFFSTYLIQPFTS
                     FIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQA
                     RLKRATSKEEQATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIA
                     SHTFLWFNLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVS
                     FTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK"
     gene            complement(16996..18447)
                     /locus_tag="U0280_000163"
     CDS             complement(16996..18447)
                     /locus_tag="U0280_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEM2270128.1"
                     /translation="MTTSPFSLKSRSLKFKWTFGASAAIFLTFFLFSYAIYQGIGQML
                     LNEEEPEVKELLLATTSTLTNQDLTDNEEIKYLFNNDKTVNRKLQDQVINLYDKDGHF
                     INKYYFSRSQDITSIDFSQYFVSGTDKFIMNKPTIDGQKMMTAQMPIVADDNTTVIGY
                     AQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRLARTMNDIR
                     KNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRTPVQIME
                     GHLKLLTRWGKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQISQTKELQITDV
                     NATVEQVRRNFEVMYENFTFTLKEDDTDLRALIQHNHLEQILIIIMDNAVKYSGDGTE
                     VDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAKQ
                     LVEGYLGTINAVSEPDKGTTIKITLPYIEPKSK"
     gene            complement(18444..19124)
                     /locus_tag="U0280_000164"
     CDS             complement(18444..19124)
                     /locus_tag="U0280_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2270129.1"
                     /translation="MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNE
                     EWDAILLDLMLPHLNGVEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKP
                     FAIEELLARLRSLLRRVENAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYE
                     LLLTLMENVNIVLTREVLLNKVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVR
                     GTGYVMRT"
     gene            complement(19315..20733)
                     /gene="gndA"
                     /locus_tag="U0280_000165"
     CDS             complement(19315..20733)
                     /gene="gndA"
                     /locus_tag="U0280_000165"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HEM2270130.1"
                     /translation="MAKQEIGVIGMGVMGRNLALNIESRGHTVSIFNRSTEKTKAVME
                     ENADKKLVPTYSLEEFVESLEVPRRILIMVKAGDATDMMIEAVKPFLNEGDILIDGGN
                     AFFKDTIRRNKELSEEGFNFIGTGVSGGEEGALKGPSIMPGGQRKAYDLVAPILREIA
                     AVADGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYTILKEIGGLSHDELADVF
                     EEWNNGELDSYLIEITKNILKVKDEETGKPIVDVILDKAGQKGTGKWTSQSALDLGVP
                     LSLITESVFARYISALKDERVYASTVLSGPSNYRFEGDKKAFVESVRRALYFSKIASY
                     AQGFAQMRAASEENDWDLQYGEIAKIFRAGCIIRARFLQKITDAYNKDKNLKNLLLDP
                     YFKDIAHNYQGDLRTVVAEAVKAGIPVPTFTAAISYYDSYRSEVLSANLIQAQRDYFG
                     AHTYERVDKPGVFHTEWPQVED"
     gene            complement(20878..21975)
                     /locus_tag="U0280_000166"
     CDS             complement(20878..21975)
                     /locus_tag="U0280_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEM2270131.1"
                     /translation="MMISNVKKYFTELIQTPSVSGKETAILTYIKKHLAKLNIEYSLD
                     EDYGLIARIPATKEKFPTIFFCSHVDTHPNAATPVFQMEQDVFTVEEGTSLGADDKAA
                     VAAMLAAIDYFCAERTAHGEIEFIFTTKEELGMIGMRLFPEEKITAAYGYCLDAPGEV
                     GNYQLQANTLVALEFTIASSEAAQMSPISIARMALHATRPGRIDRENKWEIQSFSGGI
                     NDENQQDAQLEVLFTSAASFRKALLHIQTIRERFAQTCEKYGALLTHDTKLIYEGYRI
                     RSKHPLMNIFQKAAKKQSLETREIFLEGGTDANVLNEKGIPTMLLSAGYENAHTEEET
                     VSVEQLEKLTQLVIDLAESAKNEKILLRKLN"
     gene            22093..22188
                     /gene="prli42"
                     /locus_tag="U0280_000167"
     CDS             22093..22188
                     /gene="prli42"
                     /locus_tag="U0280_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stressosome-associated protein Prli42"
                     /protein_id="HEM2270132.1"
                     /translation="MTNKKVVRVVVILMLIAIVLSSVLTGVLMFL"
     gene            complement(22345..23595)
                     /locus_tag="U0280_000168"
     CDS             complement(22345..23595)
                     /locus_tag="U0280_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEM2270133.1"
                     /translation="MAVEKITMPKLGESVTEGTISSWLVKPGDTVEKYDAIAEVLTDK
                     VTAEIPSSFSGTIKEILAEEDETLEVGEVICTIETADAGSSEPVAEVEQTETKAPEKQ
                     ETKQVKLADAPASGRFSPAVLRIAGENNIDLSTVEGTGKGGRITRKDLLQVIENGPVA
                     KREEMKSAPQEKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEV
                     DATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHAN
                     INISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVN
                     STGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGL
                     LAGKFLQAIKANVEKISKENTALY"
     gene            complement(23626..24609)
                     /locus_tag="U0280_000169"
     CDS             complement(23626..24609)
                     /locus_tag="U0280_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM2270134.1"
                     /translation="MPVISYIDAITMALKEEMERDDKVFILGEDVGKKGGVFKATAGL
                     YDEFGEDRVLDTPLAESAIAGVGIGAAMYGYRPVAEMQFADFIMPAVNQIISEASRIR
                     YRSNNDWSCPIVIRAPFGGGVHGALYHSQSVEKVFFGQPGLKIVVPSSPYDAKGLLKA
                     AIRDNDPVLFFEHKRAYRLLKGEVPETDYIVPIGEANVVREGDDITVITYGLAVQFAQ
                     QAAERLAAEGVEAHILDLRTIYPLDQEAIIEATKKTGKVLLVTEDNKQGSIISEVAAI
                     ISEHCLFDLDAPIARLAGPDTPAMPFAPTMEKHFMINPDKVADAMKELAEF"
     gene            complement(24626..25621)
                     /locus_tag="U0280_000170"
     CDS             complement(24626..25621)
                     /locus_tag="U0280_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEM2270135.1"
                     /translation="MTLKEAGLTEDKLIKMYETMLMARRLDERMWLLNRSGKIPFTIS
                     GQGQETAQIGAAFAFDLDKDYALPYYRDLAVVLAFGMTAKDIMLSAFAKAEDPNSGGR
                     QMPAHFGQKSNRIVTQSSPVTTQFPHAAGIGLAAKMAGDEIAIYASTGEGSSNQGDFH
                     EGINFASVHKLPVVFVIHNNQYAISVPASKQYAAEKLSDRAIGYGIPGERVDGTNMGE
                     VYAAFKRAADCARNGEGPTLIETVSYRFTPHSSDDDDSSYRSREEVDEAKGKDPLKIF
                     QAELLEEGYLTEEKIAEIEKSIAKEVNEATDYAESAAYAEPESSLLYVYDEEANS"
     gene            complement(25646..27073)
                     /gene="lpdA"
                     /locus_tag="U0280_000171"
     CDS             complement(25646..27073)
                     /gene="lpdA"
                     /locus_tag="U0280_000171"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM2270136.1"
                     /translation="MATEYDVVILGGGTGGYVAAIQAAKNGQKVAVVEKGKVGGTCLH
                     RGCIPTKALLRSAEVLQTVKKASEFGISVEGTAGINFLQAQERKQAIVDQLEKGIHQL
                     FKQGKIDLFVGTGTILGPSIFSPTAGTVSVEFEDGSENEMLIPKNLIIATGSKPRTLN
                     GLSIDEENVLSSDGALNLETLPKSIIIVGGGVIGMEWASMMHDFGVEVTVLEYADRIL
                     PTEDKEVAKELARLYKKKKLIMHTSAEVQAASYKKTDTGVEIKAIIKGEEQTFAADKI
                     LVSVGRSANTENIGLQNTDIATENGFIQVNDFYQTKESHIYAIGDCIPTIQLAHVAME
                     EGTIAANHIAGKVAEKLDYDLVPRCIYTSTEIASVGITEEQAKERGYEVKKGKFFFRG
                     IGKALVYGESDGFIKIIADKKTDDILGVSMIGPHVTDMISEAALAQVLNATPWEVGNT
                     IHPHPTLSESFREAALAVDGNAIHG"
     gene            complement(27088..28155)
                     /locus_tag="U0280_000172"
     CDS             complement(27088..28155)
                     /locus_tag="U0280_000172"
                     /EC_number="2.7.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate kinase"
                     /protein_id="HEM2270137.1"
                     /translation="MSFDVLTINPGSTSTKLAVYQGDKVLFEETVRHTMQELADFNNV
                     QEQFDFRWQVLRRVMDAYGYDVKKLQAVVGRGGLLRPVAGGTYMVTEKMIDDLKENKY
                     GEHASNLGALLAKKLADELTIPSFIVDPVVVDEMQEIARISGNAFIARKSIFHALNHK
                     AAGRKIAKELGKDYEKMNFVIAHLGGGISVAAHRQGKAVDVNNALDGDGPFSPERSGS
                     LPMNDFLEACFSGKWTKRELHELIVGRGGMISYLGTNSMLEVEAKVQAGDVKAIEAFD
                     AMAYQVSKEIGACSVVLQGKVDAIILTGGLARSELFTNKIIEQTNWITSVIIEPGEDE
                     LEALNSGVQRVLAGLEKEKEY"
     gene            complement(28292..29158)
                     /locus_tag="U0280_000173"
     CDS             complement(28292..29158)
                     /locus_tag="U0280_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM2270138.1"
                     /translation="MTKSRFFSDVIETSSFVFAVAGADDEVVLETIRLALNQNLGKFL
                     LFGKKEDKTLTANENVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIPTATLMHHVL
                     KKENGLRTDQLLSQIAIFDIPTYHKPLLITDCAMNVAPKTKEKIAITENAIAVAHQIG
                     IANPKIALLSAVEEVTAKMPSTVEAQEVVQHFDNTIAVSGPLALDVAISKEAALHKGI
                     TDSSAGEADILIAPNIETGNALYKSLVYFAGAKVGSAVVGAKVPIVISSRNDSPENKL
                     ASFILTVRLVEK"
     gene            complement(29288..30979)
                     /gene="recN"
                     /locus_tag="U0280_000174"
     CDS             complement(29288..30979)
                     /gene="recN"
                     /locus_tag="U0280_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEM2270139.1"
                     /translation="MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGL
                     LVGGRGSADFIRHGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRS
                     GKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
                     TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQK
                     NILANFEKLNENLQGAYAAIQGEPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSY
                     YMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKTIEDIIQYEQEISSE
                     MEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEK
                     AIFSVRFEANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFS
                     RHQGITSIIFDEVDTGVSGRVGQAIAEKIYAVSVGSQVLCISHLPQVAAMANHHYYIT
                     KKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVKQTY"
     gene            complement(31002..31451)
                     /gene="argR"
                     /locus_tag="U0280_000175"
     CDS             complement(31002..31451)
                     /gene="argR"
                     /locus_tag="U0280_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HEM2270140.1"
                     /translation="MNKGHRHIIIRELITSNEIDTQEDLVELLLERDVKVTQATVSRD
                     IKELHLVKVPTQTGGYKYSLPADNSFNPHQKLKRALIDCFIGIDNVQFMIILKVMPGN
                     GNSVGALIDNLDWPEKAGTICGDDTCLIICRSEENAKTLTDRFIDML"
     gene            complement(31642..32466)
                     /locus_tag="U0280_000176"
     CDS             complement(31642..32466)
                     /locus_tag="U0280_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEM2270141.1"
                     /translation="MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPG
                     EKIPIDSELQVKGKQMPYVSRGGLKLEKALQVFDFEVKDKLMLDIGASTGGFTDCALQ
                     NGARHSYALDVGYNQLAWKLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFIS
                     LKLILPVLRTVLVTGGDVMTLIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALD
                     NGYDLMGLDFSPITGGEGNIEFIAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK"
     gene            complement(32463..34292)
                     /gene="dxs"
                     /locus_tag="U0280_000177"
     CDS             complement(32463..34292)
                     /gene="dxs"
                     /locus_tag="U0280_000177"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEM2270142.1"
                     /translation="MSCFYLDLLKIKDPSFMKQLDIQELEALAADIRAFLITSTSKSG
                     GHIGPNLGVVELTIALHYSFNSPKDKFIWDVGHQSYVHKILTGRASQFGTLREHGGLD
                     GFPKRKESIHDVFETGHSSTSLSAAAGMVIARDIKKEEFYVIPIIGDGALTGGMALEA
                     LNHIGDMGKDMIVILNDNDMSIAPNVGAIHNILGKLRTSDTFKQTKAKVDGTFFEELG
                     FMYLGPINGHDIEEVITNLELAKRTKGPVLLHIVTKKGKGYQPAELDSRGTWHGTGPY
                     KVETGSFIKPAKRAASWSSVISNELIRLAEKDERIVAITPAMPVGSKLEKFAKAFPER
                     FFDVGIAEQHATTMAAGLATQGMKPFLTIYSTFLQRAYDQLVHDVCRQKLNVVIGIDR
                     AGLVGADGETHQGIFDISFLNSIPNMTISMPKDEVEARQLMDTAFSYNDGPFAIRYPR
                     GEAPGAQVAESNTLIPIGKWETIIQPIDAVILTFGPTIRLALKAAEQLELEGYHVGVI
                     NARYIKPLDEALLHQILKQKIPILTVEESLLKGGFGASVLEFIEASNYSDVVMHRIGL
                     PDEFISHGSVSIILESFGISTTGIVLKIKEMLAQSGKLRAKRL"
     gene            complement(34459..34659)
                     /locus_tag="U0280_000178"
     CDS             complement(34459..34659)
                     /locus_tag="U0280_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEM2270143.1"
                     /translation="MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQGDGFKSLDEG
                     QAVTFDVEEGQRGPQAANVQKA"
     gene            complement(34858..35739)
                     /locus_tag="U0280_000179"
     CDS             complement(34858..35739)
                     /locus_tag="U0280_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM2270144.1"
                     /translation="MQDLTLFLEQYKKVIDESLFKEISERNIEPRLKESMLYSVQAGG
                     KRIRPMLVFATLQALKVNPLLGVKTATALEMIHTYSLIHDDLPAMDNDDYRRGKYTNH
                     KVFGDATAILAGDALLTLAFSILAEDENLSFETRIALINQISFSSGAEGMVGGQLADM
                     EAENKQVTLEELSSIHARKTGELLIFAVTSAAKIAEADPEQTKRLRIFAENIGIGFQI
                     SDDILDVIGDETKMGKKTGVDAFLNKSTYPGLLTLDGAKRALNEHVAIAKSALSGHDF
                     DDEILLKLADLIALREN"
     gene            complement(35742..35969)
                     /locus_tag="U0280_000180"
     CDS             complement(35742..35969)
                     /locus_tag="U0280_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEM2270145.1"
                     /translation="MATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK
                     LCQDKLQSAEKRMAKVVTDAGEEIPFEADGE"
     gene            complement(35959..37311)
                     /locus_tag="U0280_000181"
     CDS             complement(35959..37311)
                     /locus_tag="U0280_000181"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEM2270146.1"
                     /translation="MEQDKYLTVAAITKYIEKKFEVDPYMKQVFVRGEISNLKQPASG
                     HLYFTVKDEFAMLRSVMFHKAVQKIGFVPEDGMNVLITGRIGVFTKAGRYQFYAEHME
                     PDGVGALYIQLEQLKSQLEKEGLFAETHKKVLPSFPSKVAVVTSKTGAAVRDILTTIH
                     RRMPSVEVIVYPTIVQGEKAAQKIVENIGKINQRNDIDVMIIGRGGGSLEELWAFNEE
                     PVVRAVYDSDVPVISAVGHETDFALSDFSADVRAATPTAAAELAVPDYRDLEERLAER
                     KYRLLAVTRQELERKERSLEQLKQHLILNGPKHQLEQQMERTDYFSERLNNAFSKQIF
                     VKQTVFDRLNDRLHYYHPNKEIELQKEQMALRLQALEKAMKQLLKDKQQSFFRQIDAL
                     EHLSPLSLLKRGFGVTYKENMLVKSVQELEVGDNIQVKMQGGQIEALITAKEEDISGN
                     "
     gene            complement(37330..38184)
                     /gene="folD"
                     /locus_tag="U0280_000182"
     CDS             complement(37330..38184)
                     /gene="folD"
                     /locus_tag="U0280_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEM2270147.1"
                     /translation="MGEIIDGKKLAKEIQEKVTREVAELVKEGKKPGLAVVLVGDNQA
                     SRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEH
                     ISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQIEGKRA
                     VVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDY
                     IKPGAIVIDVGMDRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKA
                     AKRIWKMN"
     gene            complement(38281..38667)
                     /gene="nusB"
                     /locus_tag="U0280_000183"
     CDS             complement(38281..38667)
                     /gene="nusB"
                     /locus_tag="U0280_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEM2270148.1"
                     /translation="MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLV
                     EGVMANKAEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIE
                     IAKIYSDEKSSKFINGVLANIAPEDK"
     gene            complement(38698..39105)
                     /locus_tag="U0280_000184"
     CDS             complement(38698..39105)
                     /locus_tag="U0280_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM2270149.1"
                     /translation="MAYTKDLRKQNDAPLGKIEIAPEVIGVIAGLAASEIENVAYMQG
                     GFATEMREKFSGAVNYRKGVKVELTEEGILIELYCSVLFGATIPLVAQNIQDAVRDTI
                     FNMTGLNVLEINVHIVGVQFEKTETLSFDDFEL"
     gene            complement(39109..40473)
                     /gene="accC"
                     /locus_tag="U0280_000185"
     CDS             complement(39109..40473)
                     /gene="accC"
                     /locus_tag="U0280_000185"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEM2270150.1"
                     /translation="MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQL
                     ADEAYCVGPAATKDSYLNMSNIISLAVLTNCDAIHPGYGFLAENADFAELCEDCNITF
                     IGPSASAISQMGTKDVARETMRKAGVPIVPGSQGIVKDVEDGKKIAKKIGYPVIIKAT
                     AGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNH
                     GNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEF
                     IFDHHENNFYFMEMNTRIQVEHPVTELVTGVDLVKQQFLVASGEELQIKQADVKLTGW
                     AMECRINAENPEKNFMPAPGEIKFYLPPGGLGVRIDSAAYPNYKIPPYYDSMIAKVIC
                     YAETREEVIQKMKRALSEFAIDGIPSTIPFHLRVLDNDVFLSGDFNTKFLEQNDVMNL
                     SKEG"
     gene            complement(40487..40966)
                     /gene="accB"
                     /locus_tag="U0280_000186"
     CDS             complement(40487..40966)
                     /gene="accB"
                     /locus_tag="U0280_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEM2270151.1"
                     /translation="MLSIDEIKQLIELIDESTLDEFELETKDSKILLKKNKTVVAAAV
                     QEAPIAITQAPAQAAPVAQAQTAAPQTEANTAEDASLEVITSPMVGTFYASASPEDAN
                     FVSVGSKVSAQSVVCIVEAMKLFNEITADIDGEIAEILVSSGELVEFGQPLFKVRKK"
     gene            complement(41125..41682)
                     /gene="efp"
                     /locus_tag="U0280_000187"
     CDS             complement(41125..41682)
                     /gene="efp"
                     /locus_tag="U0280_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011231892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEM2270152.1"
                     /translation="MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNL
                     RTGAIQEKTFRGGEKVAKAQIDNRKMAYLYADGTNHVFMDNESYEQIELPEDQIAHEL
                     KFLKENMEINIIMYQGETIGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVV
                     QVPFFVNEGDKLVINTTEAAYVSRA"
BASE COUNT        11894 a         8781 c         7085 g        13942 t
ORIGIN      
        1 tctccatctc tgttaaactt gttaaatcat caaaatcagc ttgaatcagt ataacatcta
       61 catcttctgc tagtaattgt ggcagtaatt tttccactgc ttgtttattt tgataatagt
      121 gaagatacaa gttccaacca gctttcgcaa gtgacaaaca aattgcttga cctatttccc
      181 cgctagcccc tgttacaaaa gcatatttta tctctttatc caaaaaaagg caaccctttc
      241 cagtctattt cttttatgat agcatgactc agcaatttat gctatttttt ctactaaaaa
      301 aagacataat ttgtttattg ttctggaagt aattggaaac ttgttgttcg ctcttcttga
      361 tccaaatttt taacaaatgc atttacttct tctagggtaa cttcctccaa taaaggtaaa
      421 atatcgaata aagaagctga tttcataacg tattggctaa attggttcgc aataaactcc
      481 ggagaattca gcgaacgcaa aaattgacca attcgtttgc gttttactaa tgctaaatca
      541 gattcattta agccgttttt ggcagcttct ttcattgctt ctttgatttt ttcggtttgt
      601 ttatctggat ctttggcatc tccaccaact aatacgaacg agaagctatc ttgtaaggtg
      661 taatcatagc caaatgtgtc gtcaatgatt ccttcgttgt ataacttcaa gtaagtgtca
      721 gaggttgtgc caaagagcat ttccaaggct acatctccaa taatttcttg ttttaaagca
      781 gcttggcctt ctaaagagcc aatatcttct ttaatcccta caaggttctt agcaatttga
      841 acagggaaat gaattttacg ctctttcact gcaactgttt ttggttcttc agggaaatga
      901 cgtttgatcg gtgcagcttc agcgaattct tttttcgctt gattggcgcg aatcaggtcc
      961 atcatttgtt ctggttctaa attccctaca acaaaaagga ccatgttgct agggtgatag
     1021 aatgtgttat agcaaagata cagtaaatct ttgttaattt cggcaatcga ttcaacggtt
     1081 ccagcaatat cgatttttac tggatgatta tgatacatat tttcgattac gccaaaataa
     1141 gcgcgaaaat caggatcatc atcatacatt ctgatttctt ggccgataat acctttctct
     1201 ttttcaacag tttcttctgt gaaatacggc tcttgtacaa agtcaatcag cgtttccaag
     1261 ttttcttcca ctcgagaagt actcgagaaa agataagctg tttttgtgaa agaggtaaat
     1321 gcattcgtaa acgcgccttt ttcgccaaat ttgaagaata catcgccgtc ttctttttca
     1381 aacattttat gttctaagaa atgggcaata ccatctggta ctttcgtgaa ttctgtttca
     1441 ccaattggga cgaagttatt atcaattgca ccgtaatttg ttgtgaatac agcataagtc
     1501 ttactaaaac cttgttttgg aagaagatac acttgtaagc catttgccat tttttcatga
     1561 aagactgctt cttttacttg ctcaaatgtg attttttcca tgaagttctt ctcctccctt
     1621 acttaagaaa taaatggtat ctggtttaat tttattgata acagcaacta cttcttcttt
     1681 ggttgcttgt ttgattttcg caatccaatt ttctaagtct aagtttgctt tacgcagaac
     1741 attgttatat acaagttcga ttaacccttg cgcttgatca tttgtttcaa gcaattgatt
     1801 aataagcatt tcttttgttt ggtttaattc atcttctgta aaattgcctt gtttcattgc
     1861 tactacttgt tcttcaataa tttttaaggc ttgttcgtaa tttacttcat caattccagc
     1921 tgaaataatc atataacctt tgaaagaatc aattcggctt gaagcataat aagccagact
     1981 cgctttttcg cgaacgttga taaagatttt cgaattagca aatccgccaa gaagcccatt
     2041 tgcaagttga agtgcaacga aatcatcatc tccaaataag gtttctgttt gataaccaag
     2101 tacaagtttc ccttgattaa tcgcttgttg ctcatgaata gtgcgcacta catttggagc
     2161 ttcttttgta taaaaaacac cttttcgttc agcacgtggc gcaaaagcca ttttttcgat
     2221 aagaggcaat acttcttctt ttgttacatc tccacaaata aatatttcga tagcatcttc
     2281 tgcaataaat tgtaagtagt attcatataa atctttcgct gtgatagcat caatgtcttc
     2341 taaaacgcca gctgagccaa aacgaaactc atcatcgcgg aacatttctt ctactagtcg
     2401 tttagaagca aaacgaattt tgtcatcgta aataccttct aaactacttt tcaagttctc
     2461 tttttcgcga gcaagtgttt catcattgaa agcgccgttt gtcacatttg gatggaataa
     2521 tgcttgttct ataaaagcaa aagcatcttc caaaatatga attccgtccg atacatattg
     2581 cccatcaatc atatcgaaaa taacagttaa tacgtgttca ttaccttttt tagctgttgt
     2641 tgtataaaaa ttagcaccgt aaagattcgc taattgcttt ctgaaagctg tttgagttgg
     2701 gtatttttca ctatttgttt ctaataatat tgaaagtaaa gcccgtttag ttactgtttc
     2761 tctttctaat ggagcgcgaa atttgaaaac aattttattg gatttatatt tttgggttgg
     2821 aacaattgtt agtgcaaccg gaccaacttt ttcttgaaat attttgtctg tcattataat
     2881 gctcctttca agcaatgatc tcactttcct attgtatctt aagttgttgc cacgcacaat
     2941 tttctagcat aaaaaacagc ctagaattta atctaggctg tttactcgta ttatttacct
     3001 ttaatgtagt tcacaccatc tgcttttggt gcttcggatt taccgataaa gccaacaagc
     3061 gctaagatag ttaatacata aggcgcaatt tgtaagtaaa cgtctggaat gtctttgaag
     3121 aatggtagcg atccgccggt aattgccaaa cattgcgcaa atccgaagaa aatagctgcc
     3181 cccattgctc caagtgggtt ccatttacca aaaatcatcg ctgcaagggc catataacct
     3241 tgaccggaaa tagttgcgtg tccgaaatca agtgtaaagg attgggcgta aaccgcgcca
     3301 cctagaccgc caaggatacc agaaatgata accccttggt atctcatcca gcgaactttg
     3361 attcccatcg tatctgctgc aagaggatgt tcccctacag aacgaagacg aagaccaaaa
     3421 cgcgttttat aaataataaa ccaagatgcg attgcaaata gaatcgccac ataactcatt
     3481 accggaatgt ttttgaagaa aatatcacca ataactggaa tatcacttaa aacaggaata
     3541 tccggtttac caaagtagta cttaatttga tctgtttggc ctttatcata aattactttt
     3601 acaaggaata aagatagacc ggttgctaaa aagttaatcg ctacaccact gattacgtgg
     3661 tcagcgcgga agttaatagt tgcaacagca tgtacaagag agaataatcc cccaacgacc
     3721 atcgccgcaa taagtgaaat ccaaggagtt aaattgccga aagtgtcttg gaaagtaagg
     3781 ttaaagacga tagcagagaa tgctcccata accatcatac cttctagtcc aatattaacc
     3841 acaccgcctc gttctgaata aacgcccccg agagcagtaa aaattagtgg gcctgccata
     3901 agcagtgtac tagaaataat tgtcgctaaa atggctgtca ttctgctttc gcccccttct
     3961 taaattttgc catcgcccag cggataatgt agctggatgc cacaaagaag ataatcagag
     4021 cgataattac attgaccaat tcgtttggaa cgcctgcaac tgctggcatg tttagtgctc
     4081 ctacttttag agcgccgaac aagatggcag agaagacaat cccaattgga gaacttcctc
     4141 cgagtaatgc aacggcaata ccgtcaaaac caatccctgg agaagaagtt aatacataag
     4201 ccgttccgta tgttccaaga ccttccatta caccaccaag accagcaagc gctccggcaa
     4261 taaccatgga aaagataatt gttttcttta cactcatacc ggcatattgc gatgcatttt
     4321 cgttaaatcc aactgcttcg atttcgtaac caaaagtagt tttgtttaac attaaccaaa
     4381 taataagtgc aaaacctagg gctattaaaa tcccccaatg tagagacgaa taatctgtaa
     4441 gtgattgtaa taattcagat tgtaaggaag cggacgcatg aatttcttgc gttttgtcca
     4501 aaccatctgt aagtaaattt tgtacgacat agttgaaaat ataaagtgcc gtgtaattaa
     4561 gcatgattgt tacgataact tcattcacac gtaaagttgc ttttaatata cctgggatga
     4621 atgcccaaag tgcaccaaaa accataccag taataatcgc aagtggtaaa tgaatccatt
     4681 tagttaaacc gtcaaagttt acagcgatga taatggaacc taaccatccc atcagcattt
     4741 gaccttccgc accaatattg aaaagtccgg ctttaaatgc aactgcaaca gatagaccaa
     4801 ctaaaatgta cggtgtagct tggcggattg tttcaccaat atagaaattt tctccgataa
     4861 caccttgaat cagagccgaa taaccagcaa ttgggtcata tccaaaaata agcatgataa
     4921 tcgcaccgca gataagtcca aggataacgg ctgtaactgg gataactaat gcttgtagtc
     4981 gtttagacat gctctttctc ccccatttcc gcttcctgtt tggatgaacc agccatcatc
     5041 agaccaagtt cttgctccgt tgtttctttc ggatcaacaa tagcaacgat tttcccttcg
     5101 tatataaccg caatacggtc acttacattc atgatttcat ctaattcgaa cgacataagt
     5161 aaaacagctt ttccattatc tcgttgttca atcaagcgtc tatgaatgaa ttcaattgct
     5221 ccaacatcta gtccacgtgt tggctgagcc gcaattaaga aatctggatt acggtgtatc
     5281 tcccttgcaa taattgcttt ttgttggtta ccaccagaaa gcgattttgc tgctacgtat
     5341 tcgctacttg cacgaacatc gtattcttca attaactcac gcgcaaagtc gtacattgct
     5401 ttatgattta agaagccttt gctagaaata ggttttttat aatatgtttg taaagcaata
     5461 ttttctccta gagacatttc gagtactaaa ccatgtttat gacggtcttc tggaatatgt
     5521 cctaaaccag cttccgtaat tttacgaggt tttttgtttt cgatatgctc gccattaaga
     5581 agaatactac cactagttac tttagaaaga cctgcaatcg ctgaaataag ttcactctga
     5641 ccattaccat cgactccagc tattccgacg atttcgccag ctctgacagt caaattaagt
     5701 ccacgaacac tttcaactcc gcggctttct ttcacaacta aatcttttac ttctaaaaca
     5761 tctttgccag gtttggcatc tattttctct gttgtaaaga ccacttcacg accaaccatt
     5821 aaattagcca aatcttgtgg tgttgtttcc ggaacattaa cagtacccat acctttacca
     5881 cggcgaataa cagttacacg gtcacaaaca tccatgattt cttttagttt atgtgtgatt
     5941 aaaatgatgg atttgccttc tttaataagg gaacgcataa tttggattaa ttctttgatt
     6001 tcttggggtg tcaaaacagc tgttggttca tcaaaaatca agatatctgc accacggtaa
     6061 agcgttttta gaatttccac acgctgttgc ataccgattg aaatatctcg tacaactgca
     6121 tttggatcaa cgcgtaagcc gtaacgatca gaaatttctt taatttcttc aatcgctttt
     6181 ttcttttcga taacaccgag tttgcttggc tctttaccaa ggatgatgtt ttctgcaacc
     6241 gtgaatttat ccactaacat gaaatgttga tggaccattc cgattccaag ctcatttgct
     6301 ttgttcgggc tattgatatt ttctttcgta ccacgaacac gaatttcgcc accatctggt
     6361 tcatataaac caaacaagac attcattagc gtagatttac ctgcgccatt ctcacctaac
     6421 aaagcatgaa tttctccctg ctttaactgt aaggtaatgt tatcatttgc tacaaatcca
     6481 gagaattcct tcctgattcc taacatttca ataacaaagt ccacttcttc actccccttg
     6541 tcgtctggtt caaactggaa aaacagccac acgcgcgatt ctctcgaagg acgccgcctc
     6601 tccccgtact tcctcccgaa gaaggttccg agttttttat ccgtttgttg ttcaatgact
     6661 tttcagctta aatactttgg tatgttgtaa aatgcgattt ataataccat ctatgtacga
     6721 aagtttactt tgcattttta agctattaaa aaagccatct ccttatttta tttctaaatg
     6781 gcattcattg caatcataaa ttccaatata ccgattattt tcttttagta aaagggttta
     6841 cctatcaaat taaaacgctt acaaattatt tttttatgaa agccggtacg tttgataccg
     6901 actttcataa aaggttttac ttcgttcata ttactcattt tttataacta taaaatcaag
     6961 gtttttctgg aactttaatg tccccatcaa cgattttttg tttgtactct tctactttag
     7021 caagaacgtc tttagaaata ttatcttgat gttcagaaag ccctacagca tctttatcaa
     7081 gaccgtattc aattttagtt ccgcctggga aatctccagc tttagcacga gttgcaaggt
     7141 cttctacagc gatatcaaca cgtttgattt cagatgtaag agttacattg taatctttgc
     7201 catcgtttgc tgtaactttt ccttcgtccc attggtcacg gtcaacaccg attacccaaa
     7261 cagcacggct aggatctttt ttcttcaggt ttttagcttc tgcaaagaca ccgttaccag
     7321 taccaccagc agcatggaaa attacgtcaa ctccacttga atacatggaa gaagcgattt
     7381 gttgtccttt gtctgcttta gcgaaatcgt ttgcatattg tacatcaatt tgtgcgttag
     7441 gattaacagc ttttacacca gcagtgaaac cagcttcaaa acggtcgata acagttcctt
     7501 ttactccacc aacaaatcca actttatttg tttttgttgt taagccagct actacaccaa
     7561 ctagataaga accatcgtta tctttaaatc caatacttac tacattatca cggtcatcaa
     7621 ttgtgtcatc aacaatagcg aattgatttt taggtttttg tttagaaact tcttcaattg
     7681 catctttcag tttgtaacca attccataaa ttaaatcata atcgctacga acagcagtgt
     7741 ttaagtttgt tttgtagtct gcttcagaag ctgattgcaa gtagttgtaa ccatctgtac
     7801 ctttttccat gtcgttagct ttaccaaatt tttgtaagcc ttcccatgct gattggttaa
     7861 acgaacggtc atcaacgcca ccagtatctg taaccattgc tactgtaaaa tctttactgc
     7921 tcttatcatc gctacttttt ttatcgtcgc tactcgaacc acaagcacct aggataacgc
     7981 cagaagcaat aatcattgat agtgctaaag caaatgtacg ctttttcacc ttaaaacccc
     8041 tcccgagaga tataatgtta gtcagagctt tctgtcaaaa caaacattca ggcgcgtatt
     8101 aaaaaattat gtatggtccc tttttcggaa aacgcacaaa aacatttaac gtcttctcta
     8161 actgttctta atataacatg gaaaataaaa taaataaata accaacttca taaattttta
     8221 atgcaaatga attcagaaaa tttaattctg tcggaatcat tcgttttttt gtcaatcctt
     8281 aggcacaagc gcattaacgt gaaaaagtaa acaatcaagt ttagttgcaa tcctctttta
     8341 ttcccttcat aataaaatga ataatgaaag gcgggatgga aatggcaaaa ataggtttta
     8401 ttggttttgg aagtatggca tcgttaattg cgactaaaat aatagaaact gaggttgcaa
     8461 ctcccgaaga actcatcctt tattccaatt caaaaaacga acatttcaac caattttata
     8521 ataaatatcc aactgctaag ctagctgata acgaagccga aattttcaca aaagcagatc
     8581 atagcttcgt ttgtaagtta cctctcgcag ttttaccact tatgaaagat tgtgctgcgg
     8641 tattgacacc tgatcgtcat gtgatttcta ttgcagctgg tgtgagtact tcagatatta
     8701 ttgaaatcac tccgggttta caggtaagta aattaatccc ttctctcaca actgctgtta
     8761 atgttggaac tactttgatt gcgcacgctg acacagtgaa tcaagctaac acttcttggt
     8821 tagaaacgac atttgagcat tttggacatg taatgactat ccgagaggaa aatatggata
     8881 tcgctagcga tttaactagc tcttctcctg gaataattgc tgctattttc gagcaatttg
     8941 tagaagctgc tcttagaaga tcttcattat cagatgcgga agtatttcaa atgattaatt
     9001 ttgctttagc tgggacttct aaattattag tagaagaaga ttacacgttt agtggcttaa
     9061 ttgaacgcgt tgctacaaag ggcgggatca ctgctgaagg cattgaactc agtgaggagc
     9121 agttacccca attttttgac gaactccttg accgaactca aacaaaatat gcttctagta
     9181 aaaaagaaat tcaagcacaa aagcaagatt tacttttata aaaaagggtt gcgactacaa
     9241 atcgcaacct ttttttattc atgctctgga ttaatttcca catttactct tcttggttta
     9301 cttccttcgt gaggtccaac tacacctctt tgttccattt catcaatcaa cctagctgca
     9361 cgattatagc caatacggaa ttttctttgt aacatcgaaa cggaagctgt ctgcatttct
     9421 acaacaagct ccactgcttc gtgatacaat tcatccgtta cttctccttc gacttctgga
     9481 atatcatcag gaatcatttc ttcgctatat tgtgcttttt gttgcgaaat aacgtaatta
     9541 actacatctt ctacttctgc atccgataaa aaagcgcctt gaattcgggt aggtttacta
     9601 gagccaactg gaagtaacag catatcgcct cgtccaagta acttctctgc tccgcccata
     9661 tcaagaatcg ttcttgaatc aatggaactt gaaacggcaa aagcaattcg agacgggata
     9721 ttcgctttaa ttacgccggt tataacatct actgatggac gctgtgttgc gataattaaa
     9781 tgtattcccg cagcacgtgc catttgagca aggcgagtaa tcgcatcttc tacgtcattg
     9841 gaagctacca tcatcaagtc agctaactca tctacaatta caacaataaa aggcaattca
     9901 ggttgttttt cttcgttcag ctcattatgt ttttttacat aatcattgta gccttgcata
     9961 ttacgagtac ctgtatgcga aaataaatca tagcgccgtt ccatttccgc aacgactttt
    10021 tgcaatgctt gggctgcttt tttaggattg gtaacaactg gtgcgagcaa gtgtggaatg
    10081 ccattataga catttagctc aaccattttt ggatcaatca tcatcatttt gacttcatgt
    10141 ggtttggcac ggagtaaaat gcttgtaata ataccattaa tacacacaga tttcccgcta
    10201 ccagttgctc ctgcgacgag taaatgaggc atcttatcga gacttgccat cattgcttct
    10261 ccagaaatat cacgaccaag tgctatttga agcttctcgt ctggattgtt tttagggttg
    10321 ttttctaaca cttcacgtaa agaaaccatg gctacatttt ggttcgctac ttcgattcca
    10381 atagcagatt tccccggaat tggcgcttca attcgaatat cttttgctgc tagagcaagt
    10441 gctatatcat cactgagtga aacaatcttg ctcactttaa caccgacaga tggttgtact
    10501 tcatattttg tcactgcagg gccaagatga acttgggtga tttttgcttt cactccgaag
    10561 ctttcaaagg tatcttctaa tttttttgcg tttactttaa tttggtcata ttctttactt
    10621 tgatccgtta ctttagccgg tgctaaaata tcaacggggg gcaattgata aatctcattt
    10681 tcgaacgatt cttgctgaaa catttctaaa tcttgctctt gtttggttgt tttttcttcg
    10741 actggtgctt tttcttgttc tactttggag ctaaagttag agatgattgg cggcgctttt
    10801 tcttcttgcg cggggtctac tacatctagt acttcatcag gctcaacctc aactattttc
    10861 tctgctttct ttttatcacg tttcgctttc acttctttgc ctttttcggt cgcaactttg
    10921 ccttttgcaa ataagtaacg aacaaattcg gcaattttgg agaaaaattg ccggatggaa
    10981 atacccgata caagggaaaa accatagata ataagtagaa cagctatcaa attcgttcct
    11041 aatctatcta ataagaaata cgtaacggag gtaattactg ccccaatcat tcccccacca
    11101 acaaaaccaa cttgatttgg tctaaataaa ttttctaata ctaatttcca agtactagaa
    11161 ataacggagg catttgctcc taagttgtgg ataatgaaat acatatgtat atatgtcaaa
    11221 aagcctaaaa caataagata aataccgact agtcttttgc taaataagtg aggcattttt
    11281 cttctaatca ccatgtaccc accaagtatc acgctacccg caagtaatac atagcttaaa
    11341 agaccaacaa acatttcagc cagagcaaaa aaaccgcgac cgacaaagcc taattgtaaa
    11401 agtccgataa ctcctattgc tattaaaata acccctgtta tttctaaacg aaaagaggct
    11461 gattgtttct tttttgagcg tgttgacgat tttttacgtc cgctcgtttt tttcttttgt
    11521 gtcgccattt caagtcccac ccattccttt tttgcttgtt ttattatagc acatctatcc
    11581 gttctgtcgc tcatactata gccctattat acaaacaaat gtttcctttc gtcaaaaaac
    11641 catatatccc aagtaggaga tatatggttt ctgttttgtt ataggtgcgg tgttttcgtg
    11701 ttcatcagct ttccgccgcg gacttccgac atacttcctc cgacagctaa gaaggcatct
    11761 ggatctattt catccagaat ggctttcact tttacttctt caaatcttga gacgataacg
    11821 aaaactactt ttcttacatc accggaatac ccgccagttg catctaagta tgtaacacct
    11881 tttccaagtt gctccataat ttctgctcca atttcctcgt aatagcggct gataataaaa
    11941 gcacttttcg attcatctac accttgaata acaatatcaa ttactttata cgctaggaaa
    12001 tacgtaatta aggaatacat cgctcgatcc cagttgaaca caagtccagc aacgataaaa
    12061 ataacaatat taataaacat aataatttgt cctgttgaaa atggcgtccg accgttaata
    12121 atgattgaaa tgatttctgt tccatcaagc gcccctccgt tacgaataac aagacccacc
    12181 ccaagaccaa gcgtcattcc gccaaaaaca gtcgcaagta gtaaatcatc tgtcactgga
    12241 tccatatcgt gtaaaacgag cgttacaatc gacatgactg caattccgta caatgtaaac
    12301 agcgcaaata cttttccgat ttttcggtaa cctatgatga aaaacggaat attaagtaca
    12361 aaagttaaaa cccctagtgg cagcggcgtt agttgcgaaa taataatcga aataccaacg
    12421 actccaccat ctaaaattcg gttgtttaca aggaaaagtt ccagcccaac ccccatcaaa
    12481 attgcgccaa aggtaatcat taaaaactta taaacaaacc acttcaacct tttcctgcgt
    12541 tcttgtttta ctttttttaa agctagttct tccataaacg attcatttat ttgcacatag
    12601 ctcacgccca atccttactt cattctttat tttaggcaat gaaaacagga tttgctttca
    12661 tcaacaaaat tttcgcttca tatttaataa gtataccata gctgttttgt acttgtacat
    12721 atagttaact ataagaagca tttttttacg gttcggttac ttgccagtct gaatttgcta
    12781 tagtatagta ttaatgcgca aacttgtgga gaatttttct tacacatgaa atatattttg
    12841 aagggtgata agattatgag tgactatcaa gtgttgttat attacaaata cacaacgatt
    12901 gatgatccag aaacttttgc aaaagagcat cttgctgctt gcaaagaaat ggaattaaaa
    12961 ggccgaattt tggtggctac tgaggggatt aatggcaccg tttcgggtac agtagaagca
    13021 acaaacaaat atatggatta tatggcaaac gatgctcgct tcgctgatat ggtatttaaa
    13081 attgacgcgg ctgatgctca tgcttttaag aaaatgcatg tacggcctcg tgctgaaatt
    13141 gttagtttaa gtttagaaga agatgttaat cctttagaag ttacagggac ttatttagag
    13201 ccttctgagt ttcgtgaagc attgttggat gaagatacgg ttattttaga cgctagaaat
    13261 gattatgaat ttgatatcgg tcatttccgc ggcgctgttc gtccagatat tcaaaatttc
    13321 cgtgagttac caggatggat tgaagataat cgcgagcaac ttgctgataa aaaaatcgtc
    13381 acttactgta ctggtggtat tcgttgtgag aaattttctg gttggttaaa aacagcgggt
    13441 tttgatgatg taagtcaact tcacggcggg attgcgactt acggtaaaaa cgaagaaacc
    13501 aaaggggaac tttgggacgg ccaaatgtac gtttttgatg aaagaatcgc ggttccgatt
    13561 aaccaagtaa accctactat cgttgggaaa gattactttg acggcacgcc ttgcgaacgt
    13621 tacatcaatt gtgctaaccc gtattgcaat aagcaaatcc tagcttctat cgaaaatgag
    13681 aaaaaatatt tgcgtagttg ttcgcatgat tgccgcgttc atcccgcaaa tctttatacg
    13741 aaaaatttat ctaaagaaga attcactgaa cgccttcaag caatcgatga aactttacca
    13801 gaaatggttc aataaataaa aaaccagctt tgctaaatga atagcagctg gtttttattt
    13861 tctattagct agtttgacta aatcgatttc tcgtaatgcg ccccatttag caagttcacc
    13921 acttatgatt aatggcgttg tttttaattc tgagatgttt ttcgcatttg caagaacaaa
    13981 taagccacgt agttgttctt tccatagctc cagtttttca atggttttgg tgacgccctc
    14041 tttttttagt gaataaataa tttgtcctgc catacctaca ctatctgctc cgagcgctaa
    14101 tgctttaacg atatctaacg ggttcctaat accacctgac gctaaataag caatctttgg
    14161 cgcatcttgg tgttgcatgt ctattaaagc ctgtccggtg gaaatacccc aatcaagtaa
    14221 gaaatcatat gcttgatcac ggcggcgatc attttcaatt tgggcaaagt ttgttccgcc
    14281 ttttccagct aaatctacgg tttgaacgcc gatatcagct agcgttttta ctgtttcacg
    14341 cgtcattcca aagccaactt cttttacaac tactggaact ggcgaaagct tgacgtactc
    14401 ttctattcta gttagccaat gactaaaaga acggtcgcct tcttgcataa ctaattcttg
    14461 tgccgggtta atatgaattt gaagtgcatt tgcctctaac atttcgatcg cccgaagtcc
    14521 ctcttgaagg gctacttctg gactaatatt tgctaaaatc atcccattcg gattgatttc
    14581 tctgacaatt ttataggtat ctattagcga actatttttt agagctgcag actgggaacc
    14641 aacagccatt gggatagcta cttcgcgtgc tatttcagca agttcggcat taattttttt
    14701 cgtatgccga cttccacctg tcatcgcatt aatatacaat gggaaaggca cattggtccc
    14761 cacaatagtt gtggttaaat cgatatcttt cacattatag cgcgggatag aagttccaat
    14821 cagttgaata tcttctaaac tcgatggcgc taactgctca ttctgtttta ctccaagagc
    14881 cacgtgttcg tcttttcgac gttctcttaa taagtcatcg ttcttctgca tgtgttaatc
    14941 ctccaaattt cttttcgcct caagcaaagg ttaaaacagg tttaaaaatc gtctcttttt
    15001 cttcgggagt tggttgatac acttccccat cagaaaataa aataagcccg tgaaatgttt
    15061 gaatatcatc ttcacagtcc tcgcagtact caacttcttc ttcattccaa gctgctaaca
    15121 aacaatcttt ttttgtttga tgattaggat aattccgtag taactcgtct gctaactctt
    15181 gatacttcag aaaggcagct tccttatctg aaaaagcaaa gtcggcttga atggaagttt
    15241 cccattcctc gaaaaaccac caaggctcgt attctccttt agttagatag acattccatt
    15301 ttgtcatatc aaaaactccc aacagtaaat atagtacact tattatagca taagctttct
    15361 ggaaatactg gaatgcaaat ttttgaaagt aatgctaaaa aaagatacac tagtaataag
    15421 gaaaaataaa aggagttggt ttcgttatgg ctagagatac agcgattttg agagtgactg
    15481 gatttgtgca aggtgttgga tttcgttaca caaccaaaca cgttgcttac aaatatgaca
    15541 ttagtggaac agtgaaaaat ttagatgacg gttccgttga aattcatgca attgctgaag
    15601 aagaaaactt aaataaattc attgatgcta tcaaaaaagg cccatcgccc ggttgtcgta
    15661 tcgaacacgt ttatatttac aaaggtgccc ctgtagaaga acgaaaaaca tttgatatcg
    15721 tttactaaaa ttccaaaaat agtagttgtg ctatagctct ttttgcatta tagttaatga
    15781 gtactaaaac cttgaaagga gcgactgcgt ggcatgattt ccattttaca aattttactt
    15841 gaaccagaat tcatttcact cacagtaacg tttttattaa tgttgacgat tttcagttat
    15901 tggtcagcca ttacattatt aaaaccgaaa atggtgctac ccgctgacgc tatctgctta
    15961 aagctagtaa aaatttcact tcgagctcaa atttatataa ctacgcctaa ttttgttatt
    16021 aattggctgg ctataaccag gaaatgtagc gccattactg atgatgaaga cagtttttca
    16081 ttttccaacg tatgaattga ttattttact atttaggagg aaaatgaaac attgaaaaag
    16141 aaaaatatta ttttaattag tgttttactt ggtgctttac tattacttac aggttgtagt
    16201 atggaccctt cacaaaatac agatggtttt ttcagcactt atttaatcca accatttact
    16261 agttttatta tgttcgttgc aaagtttgtt gggggtaatt acggaattgc gattattatt
    16321 acaacgttac ttatccgtgc actaattatg ccactaaact tgcgtactgc taaagctcaa
    16381 atgggaatgc aatccaaaat ggccgttgcc aaaccagaaa ttgatgaaat tcaagctcga
    16441 ctaaaacgtg caacatcgaa agaagaacaa gccactattc aaaaagaaat gatggccgtc
    16501 tattccaagt ataatatcaa tccaatgcaa atgggttgtt taccattact tattcaaatg
    16561 ccaatattga tggctttcta ttatgctatt cgcggatctt ccgaaattgc tagccacaca
    16621 ttcttatggt ttaacttagg ttcaccggat atggtgctag caattatcgc cgggcttgtc
    16681 tacttagcac aatactttgt ttccatgatt ggttattcac cagaacaaaa gaaacaaatg
    16741 aaaattatcg gtttaatgtc tcctattatg attttattcg tttccttcac agctccctct
    16801 gcactagcgt tatactgggc tgtcggcgga ctcttcttag caggtcaaac attactaacg
    16861 aaaaaacttt acatgaataa acacccagaa attaaagtaa tggagcaaga agaaaaagaa
    16921 ttcgagcaaa tcgtggaaga acaaaagaaa gaaaaataaa aaaaaccgca acctcgtcat
    16981 aaggttgcgg tttttttatt tggattttgg ttcaatgtaa ggaagtgtaa tttttatcgt
    17041 tgtaccttta tctggctcac taaccgcatt aatcgttcct aaatatcctt cgactaattg
    17101 tttagcaatc gcaagtccga ggccattacc acctttttcg cggcttctgg ctttatctac
    17161 acggtagaag cgattgaata ttttatcaat ctcttcttgt gagatgcctt ccccgtaatc
    17221 gcgcacatca atatggattt gcttttgttc tttatagaca tgcatatcca cttcggtgcc
    17281 gtcacctgaa tacttcacgg cattatccat aataataatt aaaatctgct ctaaatgatt
    17341 atgttgaata agtgctcgta aatcagtatc atcttctttt aaagtaaacg tgaaattttc
    17401 atacatcact tcaaaattac gtcttacttg ttctacagtt gcatttacat cggtaatttg
    17461 taattctttt gtttgtgaaa tttgttccgc tcttgataaa tcaagcattt cttgtactaa
    17521 ttttttcata cgttctaatt ccgttaacga agcgtttaat gattcatcaa gtacagccgg
    17581 atcatctttt ccccaacgag tgagtaattt taaatggcct tccataattt gcactggggt
    17641 acgtaattca tgagaagcat cctctacgaa ttgcttttgc tgttcaaaac tagtttcaat
    17701 tcgtgtcatc atatcattaa aaacaacggt caattcgcca atttcatcgc gggaattggt
    17761 tttcgtttcg attcgttttt ggaaaccatt ttttcgaata tcattcattg ttcgagctag
    17821 acgagtcagt gggtttaaga aattttgtgc tagcaagtag ccgagcattc cactaataaa
    17881 gagcgccact gccccaagta aaatcatcgt aacgagaagc cggtccatca tccgattata
    17941 ggaagtgagc ggatttacca cctgcgcgta accaatcacg gtcgtattgt cgtccgctac
    18001 aatgggcatt tgcgccgtca tcatcttctg tccgtcaatc gttggtttat tcataataaa
    18061 cttgtccgta ccactaacaa aatactgcga aaaatcaatg ctagtaatat cttgacttct
    18121 tgaaaaataa tacttattaa taaaatggcc gtctttatca tacagattaa ttacttgatc
    18181 ttgtaatttt cgattcaccg ttttatcgtt attaaataaa tacttaattt cctcattatc
    18241 ggtcaaatct tgattcgtta aagtgctcgt tgttgctaga agcagttctt ttacttctgg
    18301 ttcttcttca tttaacaaca tttgcccaat tccttggtaa atggcatagg aaaataagaa
    18361 aaaagttaga aaaatagctg cactagctcc aaaagtccat ttgaatttca aagaacgact
    18421 ttttaaggaa aatgggctag tcgtcatgta cgcatcacat accctgtccc gcgaactgtt
    18481 tggatataac tttcttcgtc aggatgatca attttatttc gtaagtaacg aacgtacaca
    18541 tccactacat ttgtttctac ttctgtttca taaccccata ctttattgag taacacttcc
    18601 cgcgtaagaa cgatattaac attttccatt aacgtaagta aaagttcata ctctcgtttt
    18661 gttaagtcaa tgatttcttc gtcgcgtttg acaatgcgat tttccttttc aacaattaga
    18721 ttacgatact gtagcgttgt ttgtttagca gattgttctg cattttccac ccgacgcaat
    18781 agcgagcgaa ggcgcgcaag taattcttca atagcgaagg gtttgacgat gtaatcatct
    18841 gctccgtgat ccagtccgga tacacgatcg ataactgagt cacgtgcggt tatcataata
    18901 atgggtgttt gtttcacttg gcgtacacga cgacaaactt ctacaccgtt taaatgcggc
    18961 aacattagat cgagtaaaat agcatcccat tcttcattaa gtgcgagttc tagtccagca
    19021 cgtccatcat tagcaaccgc tgtttcataa ttttcatgtt gtaattcgag ttcgataaag
    19081 cgtgctaagt ttttttcatc ttctacgatt aatattctat tcatttggcc taaccctctc
    19141 tttcggtcat tacactatat tcctattact attgtaacga actttagctc aaaaacaact
    19201 aataacagcg cataaataga tattttcact attttttagc actttaccat gatttactaa
    19261 ttcaaatctc ataaaaaagg cacccactcg ttaaagtgga tgccttatct tccatcaatc
    19321 ttctacttgt ggccattctg tatggaatac gccaggtttg tcgactcttt catacgtatg
    19381 agcgccaaag tagtcgcgtt gtgcttggat tagatttgca gataatactt ctgaacgata
    19441 gctatcgtag tagctaattg ctgcagtgaa tgttggaact ggaattccag cttttactgc
    19501 ttctgcaaca actgtacgaa ggtcgccttg gtagttatgt gcaatatctt tgaaatatgg
    19561 atctaataat aagtttttaa gatttttatc tttattataa gcatcagtaa ttttttgtaa
    19621 gaaacgagca cggataatac aaccagcgcg gaaaattttc gcaatttcgc cgtattgtaa
    19681 gtcccaatcg ttttcttcac tagctgctct catttgtgca aaaccttgtg cataagatgc
    19741 gattttgctg aaataaagcg cacgacgaac agattcaaca aatgcttttt tgtcgccttc
    19801 aaaacgataa ttagatgggc cagataaaac agtacttgca taaacgcgtt catctttaag
    19861 tgcagagatg taacgagcaa atacagattc tgtaattaag gaaagtggaa cacctaagtc
    19921 gagtgcgctt tggctagtcc atttaccagt tcctttttga cctgctttat caaggataac
    19981 atcgacaata ggtttgccag tttcttcgtc ttttactttt aggatgtttt tagtgatctc
    20041 gattaaatag ctatcaagtt ccccgttgtt ccattcttca aatacgtcag caagttcatc
    20101 atggcttaat ccaccgattt ctttcaaaat agtgtaagct tctgcgatta attgcatatc
    20161 gccgtattcg ataccattat gcaccatttt aacgtaatgt ccggcaccgt ctgggccaat
    20221 ataagtcaca caaggttctc cgtctgctac tgcagcaatt tcacgtaaaa taggtgctac
    20281 aaggtcatat gccttgcgtt gaccacctgg catgatagaa ggacctttta gtgcaccttc
    20341 ttctccgcct gatacaccag ttccgatgaa gttaaatcct tcttcactta gttctttatt
    20401 acgacgaatc gtatctttga agaaagcatt accgccatca attaaaatat cgccttcgtt
    20461 taagaaaggt ttaactgctt caatcatcat atctgtagca tcgccagctt ttaccataat
    20521 aaggatacgg cgaggcactt caagagattc gacaaattcc tctaaactat aagttggtac
    20581 taattttttg tccgcatttt cttccataac tgctttcgtt ttttcagtcg agcggttaaa
    20641 gatagatact gtatgaccgc ggctttcaat gtttagagcc aagttacgac ccataacgcc
    20701 cattcctata acgccaattt cttgttttgc cattttgcac ttcttccttt ccggtttatt
    20761 aaggcagaaa aatctgtctt acttcaacat gacacataaa agtatcaaca tcatttacta
    20821 tatcaaagaa ttgcttcttg gacaatgaat caatccgaat tatttgactt tttttcacta
    20881 atttagtttt ctgagaagaa ttttctcgtt ttttgcggat tctgctaagt caatgacgag
    20941 ttgagtaagt ttttctaact gctcaacaga tactgtttct tcttctgtgt gcgcattttc
    21001 gtatccagct gataagagca tggtcggaat acctttttca ttcaacacat ttgcatctgt
    21061 tccgccttct aaaaatattt ctcttgtttc caaagattgt ttttttgcgg ctttttgaaa
    21121 aatattcatt agtggatgct tagagcgaat tcggtaccct tcataaatta attttgtatc
    21181 atgcgtcaaa agagcaccat atttctcgca agtttgcgca aatcgttctc taatggtctg
    21241 gatatgcaaa agcgccttac gaaaacttgc tgctgatgta aaaagaactt ctaattgggc
    21301 atcttgttga ttttcatcat ttattccacc agaaaacgac tgaatttccc atttgttttc
    21361 tcggtcaatt ctgcctggcc gcgtggcatg taacgccatt ctcgctatag aaatcggtga
    21421 catttgggca gcttcagaac ttgcaatagt aaattctaat gcgactaacg tatttgcttg
    21481 taattgataa tttccgactt cacctggtgc atctaaacag tatccataag ctgccgtaat
    21541 tttttcttcc ggaaataaac gcattccaat catgccgagt tcttctttcg tcgtgaaaat
    21601 aaattcaatc tccccatgag ctgttcgttc tgcacaaaaa taatcaatag ccgctaacat
    21661 agctgctact gctgctttat catccgcacc taaagaagtg ccttcctcta ccgtaaatac
    21721 atcttgctcc atttggaaaa ctggcgttgc cgcatttgga tgcgtatcca catgactaca
    21781 gaaaaaaatc gttggaaatt tctctttagt agcaggaatt cgagcaatta aaccataatc
    21841 ttcatccaaa ctatattcaa tgtttaattt tgctagatgt ttttttatat acgtcaaaat
    21901 agctgtttct ttccctgaga cagatggagt ttggattaat tcggtaaaat atttttttac
    21961 attggatatc atcatttttc cacctacatt cttcctattt gccttaaaaa tcaataaatg
    22021 acttgaaatt tactttaatt ataagtaaga tatatatatc tgaaatgctt tatgagagga
    22081 gttttcttcc gcatgactaa taaaaaagta gttcgcgttg tcgttatttt aatgctaatc
    22141 gcgattgtat tatccagtgt tttaaccggg gtattaatgt ttttataaat atccgacgtc
    22201 tgagccaatt tggttcaggc tttttttatt ttttctcaaa aaaaagagca gcacccgaaa
    22261 gtactaccca agacatctag ggagtttagg ggtatggatc tagatgtact aaacaatacc
    22321 cgctaaacct agattaaaac atttttaata caatgctgta ttttctttgg aaatcttttc
    22381 gacattggct ttaattgctt gtaagaattt acctgctagt aagccatcta aaatacgatg
    22441 atcgatggat agacataggt tcaccatatc tcgcacggca atcatatcgt caataatgac
    22501 aggacgttta acaatcgatt ccacttgaag aatagcggcc tgagggtggt taataatccc
    22561 cattgattga acagagccaa atgaaccagt actatttaca gtgaaagtcc caccttccat
    22621 atcagcttgg cttagtttac cattacgcgc ttttccagca agttcgctaa tttcgcgagc
    22681 aatgccttta atagattttt cgtccgcatt tttaataact ggaacgtaca ataaatcacc
    22741 agctgcaatc gcaatcgaaa tattgatatt cgcgtgctcg ataattttat cgcctgccca
    22801 tgtgctgtta agttgcggga attctttcaa tgcttgtgca acggctttga tgaaaaaggc
    22861 gaaataagtt aatgaataac cttcttcttt tttaaagctg tctttaactg cattacgata
    22921 gcgaacaaga ccagtagcat caacttccac catcatccaa gcatgcggaa tttcttgttt
    22981 actcacgctc atatgtttag caatggcttt tcttacgcca ttgattggta tttctttatc
    23041 accagctgca gaacgaacag gaggagttgg cattgctgct ttttcttgtg gagcagactt
    23101 catttcctcg cgtttcgcta ctggaccatt ttcaatgact tgaagtaaat cttttcttgt
    23161 aattcggcca cctttaccag tgccttctac agttgataaa tcaatattgt tttcacctgc
    23221 aatacgcagt acagctggag aaaatcttcc actagctggt gcatctgcta gtttcacttg
    23281 ttttgtttct tgtttttctg gcgcttttgt ttctgtttgt tctacttcag ctacaggttc
    23341 cgaacttcct gcatctgctg tttcaattgt acaaataact tcgcctactt ctagagtttc
    23401 atcttcctct gctaaaattt ctttgatagt gccactaaag gatgatggaa tttcagctgt
    23461 tactttatct gttaaaactt ccgcgatagc atcatatttt tcgacggtat cgcctggttt
    23521 aactaaccat gaactaatcg taccttctgt aacactttcc cctaatttgg gcatggtgat
    23581 tttttcaact gccacaggtc ttcactcctt tattttaaaa cgggtctaaa attccgctaa
    23641 ttctttcatt gcatctgcca ctttatctgg attgatcata aagtgttttt ccatcgtagg
    23701 agcaaaaggc attgctggcg tatctggtcc tgcgagtctt gcaatcggag cgtctaaatc
    23761 gaatagacaa tgttccgaaa taattgctgc cacttcacta ataatacttc cttgcttatt
    23821 atcttctgtt acaagaagta ctttacctgt ttttttcgtt gcttcaataa ttgcttcttg
    23881 gtctagtgga tagattgtcc gtaaatcaag aatgtgggct tccacaccct cagctgctaa
    23941 acgttctgct gcttgttggg caaattgaac cgcaagtccg taagtaatta ctgtaatatc
    24001 atcaccctca cgaacgacat ttgcttcgcc gattggtacg atataatctg tttctggtac
    24061 ttcacctttc agtaagcgat aggcacgttt atgctcaaag aaaagtactg gatcgttgtc
    24121 acgaatcgct gcttttaaca gccccttcgc atcatatggt gaggatggaa caacaatttt
    24181 caaacctggt tgtccaaaga atactttttc aactgattga gaatgataaa gtgccccgtg
    24241 taccccaccg ccaaaaggtg cgcgaataac tatcggacaa gaccaatcgt tattagaacg
    24301 gtagcgaatt ctggaagctt ctgaaataat ttggttgaca gcaggcataa taaagtccgc
    24361 aaattgcatt tctgcaactg gacgatagcc atacatcgcc gctccaattc ctactccggc
    24421 aatagccgat tcagcaagtg gtgtatcgag tactcggtct tcaccaaatt cgtcatatag
    24481 gccagcagtc gctttaaata cgccaccttt tttcccaaca tcttctccta aaataaatac
    24541 tttatcatcg cgctccattt cttctttaag cgccatggtt attgcatcaa tatatgaaat
    24601 gactggcatt caaattccct cctaatcagc tattcgcttc ttcatcatat acatatagta
    24661 aagatgattc tggttcagcg tatgctgcac tttccgcgta atcagttgct tcgttaactt
    24721 ctttcgcaat acttttttcg atttcagcga ttttttcttc tgttaagtaa ccttcttcga
    24781 gtaattctgc ttggaaaatt ttcagtggat cttttccttt tgcttcatct acttcttctc
    24841 tggaacgata actactatcg tcatcatcgg aggagtgtgg tgtgaagcga taagagactg
    24901 tctcaattaa agtaggtccc tcgccgtttc ttgcacaatc tgctgcacgt ttaaatgccg
    24961 catatacttc tcccatattc gttccatcca cacgttcacc agggatgccg taaccaattg
    25021 ctcggtcaga tagtttttct gcggcatatt gtttcgatgc tggaacggaa atagcatatt
    25081 ggttattatg aatcacgaaa acaactggca acttatgtac agatgcaaag ttgattcctt
    25141 cgtggaaatc gccttggtta gaagatcctt ccccagttga tgcataaatc gcaatttcgt
    25201 caccagccat ttttgctgca agaccaattc ctgctgcgtg cgggaactgg gttgttacgg
    25261 gtgaactttg tgtaacgatt cggtttgatt tttggccaaa atgagctggc atttgacgtc
    25321 cgccagagtt tggatcttcc gctttagcga acgcggataa cataatatct ttcgctgtca
    25381 tcccgaatgc taacaccact gctaaatcac ggtaatatgg taatgcataa tctttatcta
    25441 aatcaaaggc aaacgcagcg ccaatttgtg ccgtttcttg tccttgtcca gaaatggtaa
    25501 aaggaatttt cccagaacgg ttcagcaacc acatacgttc atccagtctt cttgccatta
    25561 gcatcgtttc atacatttta attaatttat cttctgttaa acctgcttct tttaaagtca
    25621 tttttgttcc tcctttaaag ctgtattaac cgtgaattgc attgccatcc acagcaaggg
    25681 cagcttctct aaaactttct gataaagttg ggtgcgggtg aatggtgtta cccacttccc
    25741 acggcgttgc atttaaaact tgtgctaaag cggcttcgct aatcatgtcc gttacgtgcg
    25801 gtccaatcat gctaacgcct aggatatcgt ctgttttttt atctgcaata attttaatga
    25861 agccatctga ctctccgtaa acgagtgctt tcccgatacc acggaagaaa aatttgcctt
    25921 ttttcacttc ataaccacgt tcttttgctt gttcttctgt aataccgaca cttgcgattt
    25981 ctgtagaagt ataaatacag cgaggaacta agtcgtagtc aagtttttca gccacttttc
    26041 cggcaatatg gttggctgca atcgttcctt cttccatcgc aacgtgcgca agttggattg
    26101 ttggaatgca atcaccaatc gcgtagatat ggctttcttt tgtttgataa aaatcattta
    26161 cttggataaa accgttttcg gtcgcgatat ccgtgttttg caaaccgata ttttctgtat
    26221 tagctgaacg accgacagaa acgagaattt tgtctgctgc gaaagtttgc tcttcgcctt
    26281 taataattgc tttaatttcc acaccagtat ccgttttttt ataactagct gcttgaactt
    26341 cagcagatgt atgcatgatt aattttttct ttttataaag tcttgctaat tctttagcta
    26401 cttctttatc ttctgttggc aaaattcgat ctgcatattc tagcacggta acttctacgc
    26461 caaaatcatg catcatcgaa gcccattcca tcccgataac tccaccgcca acgataataa
    26521 ttgattttgg taaagtttct aggtttagcg caccgtcaga tgataaaaca ttttcttcat
    26581 caatgcttaa accatttaat gtgcgcggtt tggagcctgt cgcgataatt aaatttttag
    26641 gaatgagcat ttcattttca gagccatctt caaattcgac tgaaactgtt ccagctgttg
    26701 gtgaaaaaat agatggtcct aaaatagttc ccgttccaac aaacaagtca attttccctt
    26761 gtttaaataa ttggtgaata cctttttcta attgatctac gattgcttgt tttctttctt
    26821 gtgcttgtaa aaaattgatt ccggcagttc cttctacaga aataccaaat tcacttgctt
    26881 tttttactgt ttgcagaact tccgctgaac gtaataacgc tttcgttgga atacatccac
    26941 gatgaagaca cgttccacca actttccctt tttcaacgac ggctactttc tggccattct
    27001 tagctgcttg aattgctgcg acgtaaccgc cagttcctcc gccaagaata acgacatcat
    27061 attctgttgc cacattatct cctcctttta gtactctttt tctttctcaa gaccagcgag
    27121 cacacgttgc acaccgctat ttaatgcttc taattcgtct tctccgggtt ctataatcac
    27181 actggttatc cagtttgttt gctcaataat tttgtttgta aaaagttcac ttctagcaag
    27241 gccaccagtt aaaattatgg cgtcaacttt accttgcaat acaacggaac atgcgccaat
    27301 ttctttgcta acttgataag ccattgcatc aaaagcttcg atagctttca cgtcacctgc
    27361 ttgtacttta gcttccacct cgagcatgct gttagttcct aaatatgaaa tcatcccacc
    27421 acgaccaaca atcagttcat gcaattcgcg ttttgtccat ttaccgctaa aacatgcttc
    27481 tagaaaatca ttcatcggta aagaaccaga acgttccgga ctaaaagggc cgtccccatc
    27541 taaggcatta ttcacatcca ccgcttttcc ttgtcgatga gcggcaactg aaattccacc
    27601 gccaagatgc gcgataacaa aattcatttt ttcataatct tttcctagct ctttggctat
    27661 tttccgacct gctgctttat gatttaatgc atgaaaaata ctttttctag caatgaaggc
    27721 attgccagat atccttgcaa tttcctgcat ttcatccacg acaaccggat ccacaataaa
    27781 actaggtatt gtcagttcat ctgctaattt ttttgcaagc agtgccccta aatttgaggc
    27841 atgctctccg tatttatttt cttttaagtc atctatcatt ttttctgtaa ccatatatgt
    27901 accgccggca actggtcgaa gtaagccccc tcttccaact accgcttgta atttctttac
    27961 atcataacca tatgcatcca tcactcgacg tagaacttgc cacctaaaat caaattgttc
    28021 ctgtacgtta ttaaagtcgg ctagttcttg cattgtatgt ctgacagttt cttcaaaaag
    28081 tactttatcg ccttggtaaa cagcgagttt ggtagacgtg gaaccaggat ttatggttaa
    28141 aacatcaaaa gacatttgct ttcctccaaa tttaattgtg aaaaatgcgg taggttatca
    28201 ttttcccatg gactattgta acacgtaggc tgtaatcaaa taaaagcctt tgcattcaga
    28261 ttgttaaagt ccgtctattc acattatttc atcatttctc aactagtctt acagttagta
    28321 tgaatgaagc taatttgttt tccggtgaat catttcttga ggaaatgaca ataggtactt
    28381 ttgccccgac cactgcacta cctactttag ctccagcaaa gtagactaat gatttataaa
    28441 gtgcatttcc tgtttcaata ttaggagcaa ttaatatgtc tgcttctccc gctgaactat
    28501 ccgtaattcc tttatggaga gccgcttctt tggaaatagc tacatcgaga gctagcggac
    28561 ccgagacggc tattgtgtta tcaaaatgct gcactacttc ctgtgcttct actgtggatg
    28621 gcatttttgc tgtcacttct tccaccgcac taagtaacgc aattttagga ttagcgatgc
    28681 cgatttgatg cgctacggct atggcatttt ctgtgatagc aattttctct tttgtttttg
    28741 gcgctacgtt catggcacaa tcagttatca ataatggttt gtgatacgtt ggaatatcaa
    28801 aaatggcaat ttgactcaat aattggtctg tacgaaggcc attttctttt tttaatacgt
    28861 gatgcatcaa tgtggcggtt ggaatgaatc cttttactaa aatatctgct tctttatttt
    28921 ttaccgctaa aatggcgcct tgtgctgcgg cttcagcggt atctgtttga atccatgtaa
    28981 cgttttcatt cgcggttaac gttttgtctt ccttcttgcc aaataaaaga aatttaccta
    29041 aattttggtt taatgcaaga cgaatcgttt cgagcacaac ttcatcatct gctcctgcta
    29101 cggcgaaaac aaatgaactt gtttctatta catctgaaaa aaatctactt tttgtcataa
    29161 aaataactcc tttatcgcac aaaaaagccg cattccgaat tagtagttgt ttttatgacc
    29221 aggtaataat tttctacctt attcatttta agcaaaaact attcgatatg caagcaattt
    29281 cgttttttta atacgtttgt tttacttttt ccgcttgttc aatcatttct tttgcatgtt
    29341 gtttggttaa ttcggtgact tctattccag caatcattcg actgatttct tctactttct
    29401 cttccccttt aagcactgta acggaagttg ttgtccgttt gttttggact tttttcgtaa
    29461 tgtagtagtg atggttcgcc attgctgcaa cttgaggtaa gtgactaatg catagtactt
    29521 gcgagccaac tgaaacagca taaatttttt ctgcaatcgc ttgaccaacg cgaccactta
    29581 caccagtatc tacttcatcg aaaataatcg aggtgatacc ttggtgccta gaaaaaatgg
    29641 tttttaatgc taacatcatt ctagataact ctccaccaga agcgattttt gctaatggtt
    29701 ttaaaggttc acccgggttt gttgacatat agaaaacgac gctatcttgc cctgaatctg
    29761 ttagttccat tttgtttgct tcgaagcgta cactaaaaat ggctttctcc atatataagt
    29821 gatttaattc ttgtttgatt tgtttttcta atgtaacagc cgctttttta cggatttccg
    29881 ttagtgtatt tgcttgtttt gttagttctg ctttaagtgt tgctaatttg gtctctaaat
    29941 gcccgacatg tgattcacta tctgtcagtt tttccatttc gctgcttatt tcttgttcgt
    30001 attgaatgat atcttcaatt gttttaccat atttgcgttt taattggttt aaatcattca
    30061 aacgtgattc aatttgattc agttcttctg gttggaattc gagctgatct agtgattgcc
    30121 taatttggct catgctatct tctaacatat agtaactaga agaaatggcc tcactaaccg
    30181 ctttataatc cgtatgaata ctcgccgctg cctccatttg acgcattgct tctccaacaa
    30241 attccagccc accaggctca ccttgaatcg cggcataagc tccttgtaaa ttttcgttaa
    30301 gtttttcaaa attggctaag atattttttt gttctaacaa gcgatcttct tcaccagctt
    30361 gcaaattggc attttcaatt tcctgttgtt gaaaacggag catatccaga cgttgcgcta
    30421 attcccgctc atttttcgtc caattttgcc actctttctc gattgtttga tattctttga
    30481 aattagtttg gtacttggtt agtgctggct tgattttgtc agaagcgaaa cgatcaagta
    30541 atgacaaatg aaactcctca ttcatcaatt cctgatgttc atgctgacta tggatatcta
    30601 ttaatttcga gccaatttgg cgcaagagaa cggtagttac aagtttgcca ttaattcggc
    30661 aactattttt ccccgagcga aacaggctgc gttctagtac aaccatatca tccgaagcat
    30721 ctatcccatt ttcaattaac gcatttcggc aagcaaggtt atcctctgct agcgcaaaaa
    30781 gcccttgaag ttctaaacgt tcttctccat gacggataaa atcagctgat ccgcgtccgc
    30841 caacaagaag accaagcgca tcaataataa ttgatttacc agcgccggtc tcccccgtaa
    30901 gtaccgtcat cccttcttga aaagttaaag aaagcgattc gatgatagca aagtttttaa
    30961 ttgtcatttc ttgaagcaaa atctttcacc tccaacaaat tttaaagcat atctataaaa
    31021 cgatctgtta atgttttcgc attttcttcc gagcgacaaa taattaaaca agtgtcatct
    31081 ccacaaatag ttccggcttt ttccggccag tccaagttat cgattaatgc accaaccgag
    31141 tttccatttc ctggcattac ttttaaaata atcataaatt gcacgttatc aatgccaata
    31201 aagcaatcaa tcaaagcgcg ttttaatttt tgatgtgggt taaaactatt atcggcaggt
    31261 agactgtatt tgtaaccacc tgtttgtgtt ggaactttga caagatgaag ttctttaata
    31321 tcacgggaaa cagttgcctg ggtgacttta acatcgcgtt ctaacagaag ttctactaaa
    31381 tcttcttgcg tgtcaatctc attggatgta atcaattctc gaataataat atgacgatga
    31441 cctttattca ttccttcttc acctcacgat aattttctac ttacatctta tccgaaaaaa
    31501 cgcataaagt cacggattta gtgcaaattt atgcaagaaa agtttcttta atactttata
    31561 cataggtaat acattgcaaa atgagccaaa acagcatgat aaaagcaaaa accggaaaac
    31621 atcactgctt tccggtatac attatttatc taattttgta tgtgcttttg tgataagttt
    31681 cgcaatcgca tttggttcca aatgattagt tccagtttcc ccaccagtcc atttaagatg
    31741 cgcgataaat tcgatgtttc cttctccacc tgtaataggt gaaaaatcaa gtcccatcaa
    31801 atcataacca ttatcgagcg caaattgaac aatatgttca actaccgatt catgtactgc
    31861 tggatcacga ataatccctt ttttaccgac ttgctctcgg cctgcttcaa attgtggttt
    31921 gataagtgtc atcacatcgc caccggttac aagcacagtt ctaagtactg gtaaaattag
    31981 tttgagtgaa ataaaggata catcaatcgt tgcaaaatct gctaaacctt cggaaaaatc
    32041 agctggcgtt acatgacgga aattagttct ttccatcaca gtgacgcgat catcgttgcg
    32101 cagtttccat gcaagctgat tatagccaac atcgagcgca taagagtgtc ttgccccatt
    32161 ttgtaaagcg cagtctgtaa aaccaccagt tgatgctccg atatccagca taagtttatc
    32221 tttcacttcg aaatcaaata cttgcaatgc tttttctagc tttaatccac cgcgactaac
    32281 ataaggcatt tgctttcctt ttacttgaag ttcgctatca atagggattt tttctccagg
    32341 tttatctaca cgttcttctt tccgataaac aattcccgcc ataattgcac gttttgcctt
    32401 ttctcttgtt tcaaatagtc cttgttctac tagcagaata tctgcgcgtt ctttttttat
    32461 tgtcatagtc tcttcgccct taacttcccg ctttgtgcga gcatttcttt tatttttaat
    32521 actattccag ttgttgatat gccaaatgat tccaaaatta tggatacaga accatggcta
    32581 ataaattcgt ctggtaaacc gattcgatgc attacaacat cgctataatt actcgcttct
    32641 ataaattcta acacactcgc accaaatcca ccttttaata gtgattcttc tactgttaaa
    32701 atgggaattt tttgctttaa gatttggtgt aaaagtgctt cgtctaacgg tttaatatag
    32761 cgcgcattaa ttactccaac gtggtatcct tctaactcta attgttcagc tgcttttagc
    32821 gctagccgga tggtagggcc aaaggttaaa ataacagcat caatcggctg aatgattgtt
    32881 tcccactttc cgattggtat aagcgtatta gactcagcta cctgcgcacc aggagcttcg
    32941 ccgcgtggat agcgaatcgc aaagggccca tcattatacg aaaacgcagt atccattaat
    33001 tgtctagctt ccacttcatc tttcggcatg ctaatagtca tgtttggaat actatttaaa
    33061 aatgaaatat caaagatacc ttgatgtgtt tcgccatcag cgccaacaag cccggcccgg
    33121 tcaatcccaa tgaccacatt caacttttgc cggcaaacat catgaactaa ctgatcatag
    33181 gctctttgta aaaaagtgga ataaatagta aggaacggtt tcatcccttg tgttgctagc
    33241 cccgctgcca ttgttgtcgc atgctgttcc gcaatcccaa catcaaaaaa gcgttctggg
    33301 aaagctttcg caaatttttc taatttagag ccaacaggca ttgccggagt tatcgcaaca
    33361 atccgttcat ccttttctgc caaacgtatt aattcattgc taataactga actccatgac
    33421 gctgcacgct tagccggctt aataaagcta cctgtttcga ctttataagg tcctgtacca
    33481 tgccaggtgc cacgagagtc taattcggcc ggttgatacc ctttgccttt ttttgtaacg
    33541 atatggagca gtacaggccc ttttgtgcgt tttgctaatt ccaagttagt aataacctct
    33601 tctatatcat gcccattaat tgggcccaaa tacataaacc caagctcttc aaaaaaagta
    33661 ccatcgactt tagcttttgt ttgcttaaat gtatcagagg tccttaattt tccaagtatg
    33721 ttgtggattg ctcccacgtt tggcgctatc gacatatcat tatcatttaa aataactatc
    33781 atatcttttc ccatatcgcc tatatgattc aaagcctcta aagccatgcc acctgttaag
    33841 gcgccatcac cgattatcgg aataacataa aattcttcct ttttaatatc tctcgcaata
    33901 accatcccgg ctgcagcaga caaagaagtt gagctgtgcc ccgtttcaaa tacatcatga
    33961 atagattctt tccgctttgg aaatccatct aatcccccgt gctcacgtaa agtaccaaat
    34021 tggctcgccc ttccagttag gattttgtgc acatatgact ggtgaccaac atcccaaata
    34081 aatttatctt ttggactatt aaaagaataa tgcaacgcaa tcgttagttc taccacacca
    34141 agattcggac caatatgccc acctgattta gaagtagaag taattaaaaa agcgcgaata
    34201 tctgccgcaa gtgcttctaa ttcttgtata tccaattgct tcataaagga aggatccttt
    34261 atttttaaaa gatccaaata aaaacaactc actttccaaa gagccacttg catgaatgtg
    34321 tgcaaggtct tttttctcaa ttaattgttc ttattatagc aaacaatcac cattaaacca
    34381 aacaaggtaa aataatttta ggcaaataaa aaagcaaatc accgaaatga tttgcttttt
    34441 cttattcaaa aaatagaatt acgctttttg aacgttagct gcttgaggtc cgcgttggcc
    34501 ttcttcaacg tcgaaagtta ctgcttgacc ttcgtctaaa gatttgaatc cgtcgccttg
    34561 gatagcgctg aaatgtacga atacatcgtc accgttttcg cgttcgataa aaccaaatcc
    34621 tttttctgcg ttaaaccatt ttactgtacc ttgttccatg ttcatgttcc tcctcgtgtg
    34681 ttatgcacac taattattta ctattcttgc ttaacggcac gagatggaaa gttgttcaca
    34741 atcgtatctt tcacccacaa aaataatctt acattagtat aacacggtat tttaggaaaa
    34801 gcaaatcaat ttgaattata tatgtgaaaa aaatttgaaa ttactagata attatgatta
    34861 attttctcta agtgcgatta aatcagcaag tttcaagaga atttcatcat caaaatcatg
    34921 ccctgaaagc gctgactttg caatcgcaac atgctcattt aatgcccttt tggcaccatc
    34981 aagcgtgagt aatccgggat aggtactttt gttcagaaaa gcgtcgaccc ctgtcttttt
    35041 acccattttt gtttcatcac caataacatc taaaatatcg tcactgattt ggaatccaat
    35101 cccaatattt tccgcaaaaa tccgtaatct tttcgtttgt tctgggtcag cttctgcaat
    35161 tttcgcagca gaagttacgg caaaaattaa taattcgcct gttttccgtg catggatgga
    35221 tgatagttct tctaatgtca cttgtttgtt ttctgcctcc atatctgcaa gttgaccgcc
    35281 aaccattcct tctgcaccac tactaaaact aatttgatta atcaaagcta tgcgtgtttc
    35341 aaaagataaa ttttcgtctt ccgctaaaat agaaaaagca agcgttagta aagcgtctcc
    35401 tgccaaaatc gcagttgcat ccccaaaaac tttatgatta gtatatttgc cgcgacgata
    35461 gtcatcatta tccattgctg gtaaatcatc atggatcagg ctatacgtat gaatcatttc
    35521 taacgccgtt gctgttttca cacctaaaag cggatttact tttaaggctt gaagtgtagc
    35581 aaaaactagc atgggacgaa tccgttttcc acctgcttga acagaatata acatggactc
    35641 ttttagtcta ggttcgatat ttcgctcgct tatttcttta aaaagcgact catcaatcac
    35701 ttttttatat tgttctagaa aaagggttaa atcttgcaaa tttattcacc atccgcttca
    35761 aaaggaattt cttctcctgc atctgtgact acttttgcca ttcgtttttc tgctgattgt
    35821 aatttatctt ggcacaattt tgttagttcg attccttttt ggtacatatc gagagaatct
    35881 tcaagtgagg cactaccatt ttcgagtgct tctacgattg tttctaattc tgcaattgct
    35941 tcttcaaaag ttttcttttt agttgccact tatatcttcc tccttcgcgg taatgagtgc
    36001 ctctatctgt ccgccttgca ttttcacttg gatattatcg ccgacttcaa gctcctgcac
    36061 tgatttaacc agcatattct ctttatacgt tacaccaaat cctcgtttca ataaagaaag
    36121 aggactcaga tgttctagcg catctatttg ccgaaagaaa gattgttgtt tgtctttcaa
    36181 aagttgtttc atcgcttttt ctaatgcttg aagtcgtagt gccatctgtt ctttttgtag
    36241 ttcaatttct ttattcggat ggtaataatg tagccgatca tttaatcggt caaaaactgt
    36301 ttgcttaaca aatatttgtt tagaaaaagc attatttaat cgttcggaaa aataatctgt
    36361 acgttccatt tgctgttcta attgatgttt cggaccattt aaaatcaagt gttgtttaag
    36421 ttgctctagt gaccgttctt ttctttctaa ttcttgtctg gtgactgcga gcaaacggta
    36481 tttacgttct gctaatcgtt cttctaaatc gcgataatct ggaacagcaa gttctgccgc
    36541 cgcagttggc gttgcggctc gtacatctgc agaaaaatca cttaacgcaa aatcagtttc
    36601 atgtccgacc gctgaaatta caggtacatc ggaatcatat actgctcgaa caacaggttc
    36661 ttcattaaaa gcccatagtt cttcaagcga accaccacca cgcccaataa tcataacatc
    36721 aatatcattt cgctgattaa tcttgccaat gttttcgaca attttttgag ccgctttctc
    36781 cccttgaaca atagttggat aaacaatcac ttccacagaa ggcattcttc gatgaatggt
    36841 ggttagtata tcacgaacag ccgcaccagt tttggacgta acgacagcga ctttggacgg
    36901 gaaagaagga agcacttttt tatgcgtttc cgcaaaaagc ccttcctttt ccaattgcga
    36961 ttttaattgc tctaattgaa tataaagcgc tccgacacca tctggttcca tatgttctgc
    37021 atagaactga tagcgaccag cttttgtaaa tacgccaatt cgtcctgtga taaggacatt
    37081 cataccatct tctgggacaa aaccaatttt ttgaactgct ttgtgaaaca tgacagaacg
    37141 aagcatcgca aattcatctt ttaccgtaaa atatagatgt ccactcgctg gttgttttaa
    37201 attagaaatt tcaccgcgca caaaaacttg cttcatgtag ggatctactt caaacttttt
    37261 ttcgatatat ttggttattg ctgctaccgt caaatattta tcttgctcca tcatttcaca
    37321 tccaattaat caattcattt tccaaatgcg ttttgctgct tttaatgtgt tcgcaagtag
    37381 cattgtgatt gtcatcgggc caacgccacc tggtaccggc gtgataaatc ctgcttcttc
    37441 taccacatca tcaaagtcca catcaccgca tagcttatta ttttcgtcgc gatccatgcc
    37501 aacatcaata acaatcgcgc ctggtttgat ataatctttt ttcacgaatt tcgctaggcc
    37561 tgtcgctaca acaagaatat ctgcttcttt cgctacttga ggtaaatctt ttgtacggct
    37621 atgcgcaatg gttactgtcg cgttttcatt taacagtaat tgagctactg gtttccctac
    37681 gatgttactt ctaccaataa caacagcgcg tttgccttct atttgagtgc cggtcgattt
    37741 tataagttca ataattcctg ctggtgtaca aggaacaaaa gaatcttttc cgatgaataa
    37801 attacctaca ttcactggat ggaaaccgtc aacatctttg tcatagctaa tagtatcaat
    37861 tactttttct tctgaaatgt gttctggtag tggtaactgc acgagtatgc catgaatagt
    37921 tttatcttcg ttaagctcct ctacaacaga tagtaatttt tcttctgtta cattttctgg
    37981 aagttcaatt aaaacggatt tcatccccgc ttcttctgtc cgtttttgtt tatttcttac
    38041 atatgtacga gatgcttgat tgtcgccaac gagcacaaca gcaagccctg gtttcttacc
    38101 ttcttttact aattcagcta cttctcttgt tactttttct tgaatttctt ttgctaactt
    38161 tttgccatca ataatttctc ccatgagtat tgccccctta aaaatacttt ccacgtaatt
    38221 attcttaaaa aaatcacgaa ataagggagt gcaagagatt tcccttgcac tcaatcaagc
    38281 ttatttatct tccggtgcaa tattagcaag tacgccatta ataaatttac ttgatttttc
    38341 atcactgtaa atttttgcaa tttcgatgga ttcattcaaa ctaactctat ttggcacatc
    38401 atccaagtac ttaatttcat agacacttag tcgaagtaag gatagatcga ctttactcaa
    38461 acgatccatg cgccaattat ctaaattagg ctcaatgata gcatcaattt cagctttatt
    38521 cgccattacg ccttcgacta atttttccat atagtcgtct tgctcgtctt ccatgatgtt
    38581 tttaatagct tgatctagcg acatttcgtt tagctctatt tggaatagtg cttgaagtgc
    38641 tttctcgcgc gcttctcttc ttttcatgtt aaagctgctc cttttgttcc ttgaatttta
    38701 tagctcaaaa tcatcgaagg aaagtgtttc tgttttttca aattgtacac caacgatatg
    38761 aacgttgatt tcaagtacat ttaaaccagt catattaaaa atggtatctc tgacagcatc
    38821 ttgaatattt tgagcaacaa gtggaatagt tgcgccaaat aagactgaac aataaagttc
    38881 gattagaatt ccttcttcgg ttagttctac ttttacgccc ttacggtagt ttacagcacc
    38941 actgaatttc tcacgcattt ctgttgcaaa gccaccttgc atataagcaa cattttcaat
    39001 ttcacttgcg gcaagtccag caattacgcc gattacttca ggtgcaatct caattttgcc
    39061 aagcggtgca tcattttgtt tacgcaaatc ttttgtataa gccattattt agccctcctt
    39121 agaaagattc attacatcgt tttgctccaa gaatttggta ttgaagtcgc ctgataaaaa
    39181 cacatcatta tctaatacac gtaaatggaa cggaatcgtt gaaggaatgc catcaatggc
    39241 aaattcggac aacgcacgtt tcattttttg aatcacttct tcccgtgttt ccgcataaca
    39301 gattactttg gcaatcatcg aatcatagta tggtgggatt ttgtagtttg gatatgctgc
    39361 tgagtcaatt cgaacaccta agccacctgg aggaagataa aatttaattt cacctggagc
    39421 tggcataaag tttttctctg gattttcagc gttaattcga cattccatcg cccaacctgt
    39481 taatttcaca tctgcttgtt taatttgtag ttcttcccca gaagcaacta gaaattgttg
    39541 tttcactaaa tcaacaccag taacaagctc ggttaccggg tgttctactt ggatacgcgt
    39601 attcatttcc ataaagtaaa aattattttc atggtgatcg aaaatgaatt caatcgttcc
    39661 tgcgccagaa taattcacgg ctttggcagc tttaacagca gctttcccca ttttttggcg
    39721 agttttttca tcaatggcag gtgatggtga ttcttcaatt agcttttgta agcgacgttg
    39781 aatactacaa tcacgttctc ctaaatgaat aacgttacca tggttatcag caagcacttg
    39841 aatttctaca tggcggaaat cttgaatata cttttctaag taaacgccag gatcaccaaa
    39901 tgcggcttcg gcttcttgtt gggtagtttg aatgccagaa attaattttt cttcattttc
    39961 tgctacacgg atacctttac cgccaccgcc agctgttgct ttaatgataa ccggataacc
    40021 gattttctta gcgatttttt tgccatcttc tacatcctta acgattccct gcgaaccagg
    40081 aacgattgga acacctgctt tacgcatcgt ttcgcgggct acatcttttg ttcccatttg
    40141 cgaaatagcg gaagcacttg gtccgataaa agtaatatta cagtcttcgc ataactccgc
    40201 gaaatctgca ttttcggcta agaaaccata gcctgggtga atagcatcac agttcgttaa
    40261 aactgcaaga ctaataatgt tggacatatt taaataacta tcttttgttg ccgcgggacc
    40321 tacacaataa gcttcatccg ccagctgaat atgtagcgct tctttatctg cttccgaata
    40381 aatcgccact gtctccactc caagttcttt tgcagcgcga atgatacgga cagcgatttc
    40441 tccacggttc gctaccagta cttttttaat catgtttttc gaccccttat ttttttctaa
    40501 ctttgaatag tggttgtcca aattcgacta attcgccact tgaaacaaga atttctgcga
    40561 tttctccgtc aatatcagca gtaatttcat tgaataattt cattgcttct acaatacata
    40621 caacagattg cgcagatact ttagatccaa cgctaacaaa attagcatct tctggtgaag
    40681 cagatgcgta aaaagtccca accattggcg atgtaatgac ttctaaacta gcatcttccg
    40741 ctgtatttgc ttctgtttga ggagcagctg tttgagcttg tgctactggt gctgcctgag
    40801 ctggtgcttg tgtgatagca attggtgctt cttgaactgc tgcagcaaca accgttttat
    40861 tctttttaag caaaatctta ctatctttcg tttctaactc aaattcatct agggttgact
    40921 cgtcaatcag ctcgattagc tgtttaattt catctattga taacatacca tttacactcc
    40981 ttaataatac taaaaataaa aaattgcatg aatcacgcat tgtccttatt gtaccatact
    41041 ttttattcaa aaggtgtact ggaagcgcta agaaatagaa aaacagctga agaattaact
    41101 ccagctgtag taaacgattc ttgcttacgc ccgagaaaca tacgctgctt cggttgtatt
    41161 aattactagt ttgtctcctt cattaacgaa aaatggcact tggacaacaa gaccagtttc
    41221 aagagtggct ggtttagaac cgcctgaaga agtatcacct ttaattccag gatcagttgc
    41281 agtaacaact aattctactg tgttaggtaa atcaataccg attgtttcgc cttgatacat
    41341 gataatatta atttccatat tttcttttag gaatttaagt tcatgagcaa tttggtcttc
    41401 tggaagctca atttgttcat aagactcatt atccatgaat acgtgatttg tgccgtcagc
    41461 atacaagtag gccattttac ggttgtcgat ttgcgctttt gctacttttt cgccaccacg
    41521 gaatgttttt tcttggattg cacctgtacg aaggttacgt aatttggaac gaacgaatgc
    41581 tgctcctttt ccgggtttta catgttgaaa atctagcaca cgccaaatac cattatctac
    41641 ttctattgtt aaccctgttt taaagtcatt tactgaaatc atgtttttcc tcctgtaatt
    41701 tg
//
LOCUS       DASDXX010000004        35228 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.004, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000004 DASDXX010000000
VERSION     DASDXX010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 35228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35228
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.004"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..225)
                     /gene="ffs"
                     /locus_tag="U0280_000188"
     ncRNA           complement(<1..225)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="U0280_000188"
                     /product="signal recognition particle sRNA large type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01854"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01854"
     gene            complement(501..2015)
                     /locus_tag="U0280_000189"
     CDS             complement(501..2015)
                     /locus_tag="U0280_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEM2270153.1"
                     /translation="MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETG
                     KAEESPTEIFEAVLSSIQAVMKNVNKEELAGISFSSAMHSLIMVGSNGELLTECITWA
                     DGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIK
                     SYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDLLPKVVPETYQLTG
                     VKKEYAELMGIPENLPFIVGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTNQFQI
                     DSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVP
                     PGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEA
                     VSAPDDIIYVTGGISAHDGWCRLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKD
                     LNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS"
     gene            complement(2128..3066)
                     /locus_tag="U0280_000190"
     CDS             complement(2128..3066)
                     /locus_tag="U0280_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2270154.1"
                     /translation="MKKLLSGLIIVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVN
                     QSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGW
                     IDSRAFTNVGKPTIADTVPALWNSKKAIITTKPKNTTATTYFFQKNSAGNWYEVRHFT
                     SHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDK
                     SYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGC
                     VAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN"
     gene            complement(3109..4056)
                     /locus_tag="U0280_000191"
     CDS             complement(3109..4056)
                     /locus_tag="U0280_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2270155.1"
                     /translation="MKKFHGLVLTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTD
                     TTENIITEEKPEPAVPTKDTTVTTSQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTA
                     TLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDSEDGKTTAVKLNYLVKEKTAQL
                     TITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQI
                     TAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATAKPADVAKVT
                     KDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK"
     gene            complement(4199..5938)
                     /gene="cydC"
                     /locus_tag="U0280_000192"
     CDS             complement(4199..5938)
                     /gene="cydC"
                     /locus_tag="U0280_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydC"
                     /protein_id="HEM2270156.1"
                     /translation="MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLIS
                     KSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEP
                     QALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFA
                     ALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKT
                     FISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTM
                     IAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPTLPTFEEETKEIERINT
                     ENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLP
                     TAGKVTMNGVEVENLRPQIPEITSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAK
                     KVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDP
                     ITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPR
                     YKRLYQLDRPIEL"
     gene            complement(5938..7662)
                     /gene="cydD"
                     /locus_tag="U0280_000193"
     CDS             complement(5938..7662)
                     /gene="cydD"
                     /locus_tag="U0280_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydD"
                     /protein_id="HEM2270157.1"
                     /translation="MGKDLRNYKGIKKIMAILAVFTLVQGAAIIVMAITLARAITDLF
                     HEHAFQSVTIQIGLFAGAYFLRHFLNVWKKQIVYRYAAKLAKTMREELLDSLFALGPR
                     FARAEGTGKVVTMVMEGVADFRNYLELFLPKMMNMAIIPAMIWVYIAFQDWTSAFILM
                     ITLPILIVFMIILGLAAKKQADSQFETYRVLSNHFVDSLKGLETLRYLGLSHDHEGKI
                     ASVSSRYRKATMKTLRVAFMSSFALDFFTMLSIALVALFLGLGLIDGNMNLPIALSVL
                     ILAPEYFLPVREVGSDYHATLDGQEAGRVIQGIIDQAKAEKPETNALPLTTFAENTEF
                     SFENITVKHDVDAADSLHEASFTVKGFEKVGIIGATGAGKSTLIDVLSGFLTPTSGGF
                     RWNGESGASLASSDWQTQVTYIPQHPYLFHDTIAGNIRFYHPNSTDEEMKKAAESAGL
                     NKLVAGLEDGYETLVGEAGRMLSGGQEQRVALARAFLTDRPIVLMDEPTAHLDIETEY
                     ELKKPMLDLFENRLVFFATHRLHWMLEMDRIIVLDHGAVVETGTHEELLSRKGFYYNL
                     VKAQLEEV"
     gene            complement(7662..8675)
                     /gene="cydB"
                     /locus_tag="U0280_000194"
     CDS             complement(7662..8675)
                     /gene="cydB"
                     /locus_tag="U0280_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEM2270158.1"
                     /translation="MSLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRV
                     LVNTIGPFWDANEVWLLTAGGAIFAAFPNWYATMFSGYYIPLVFLLLALIGRGVSFEF
                     RGQKDSPLWIKTWDWVIFFGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVF
                     SVWGGVTITLMCLLHGLLFITLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNT
                     DMFQVRPVLVPLMIGIVVVMYVLSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPR
                     VMISSINSAFDLTIENAASGQYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKRVSSKEK
                     MTY"
     gene            complement(8662..10068)
                     /locus_tag="U0280_000195"
     CDS             complement(8662..10068)
                     /locus_tag="U0280_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEM2270159.1"
                     /translation="MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGK
                     EIYKKMSKFWGHIFLINFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLA
                     FFMESTFIGLWIFGWDKLGKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKN
                     GRAEMNDFLQLITNGQLLVEFPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQ
                     IAMVMAVIGGFGVAFSGHSQAQYLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEE
                     KKNEWEVNVPYALSFLSYGTLTGSVEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIM
                     VGAGMLMILFALIGIVLAWKKKLVNAKWYLRFMIPMIGFPFLANSMGWIMTEIGRQPW
                     VVFGYMKTADAVSPNVSSGQILFSIIAFSTIYTILAILLVYLFIREIKKGPDGHKPEK
                     AEISVDPFDKGDESFVTK"
     gene            complement(10450..10920)
                     /locus_tag="U0280_000196"
     CDS             complement(10450..10920)
                     /locus_tag="U0280_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEM2270160.1"
                     /translation="MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRE
                     TSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAK
                     DPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSEMLRSFFQDLRKRNKLNRS"
     gene            11115..12692
                     /locus_tag="U0280_000197"
     CDS             11115..12692
                     /locus_tag="U0280_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HEM2270161.1"
                     /translation="MNSENLIAPELYNITDEIAKFSSEKTALIWKNEHNETKNWSYRH
                     LLEQANKFANVVKDAGIKKGDHVIVMTPRLLETYAIYMGLWKAGAIIIPASELLKAHD
                     LEYRIHHANVKAIVSYNGMTAEFDKIESIPSVSKKIIVGEKLSGWDHYETLMEAASTE
                     FERVETSRDDACLLAFTSGTTGNPKGVVHIHGWGYAHIRIAADHWLDIHEDDIVWATA
                     GPGWQKWVWSPFLSVLGKGATGFIYNGRFIPEKQLHLLEEEKINVLCCTPTEYRLMAK
                     VNNLREHDLSSLRSAVSAGEPLNREVIQVFQDNFDIKVRDGYGQTESTLLIGTLVDTP
                     IRPGSMGKPIMPEYMAIIDAEGNPVGVGEIGDIAMRRDFPALFKEYYKEPERLQKAIR
                     GDYFVSGDRAIRDEDNYYWFQGRNDDIIISSGYTIGPFEVEDALTHHPAVKEVAVVAS
                     PDEIRGTVVKAFIVLKDGYEGTEDLVHELQTFTKEQTAPYKYPRRIEFVEALPKTDSG
                     KIRRVELRDAEFASVHG"
     gene            complement(12734..13453)
                     /locus_tag="U0280_000198"
     CDS             complement(12734..13453)
                     /locus_tag="U0280_000198"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2270162.1"
                     /translation="MKIIVEKDYENMSKTTMQLLLGKMYQDKLVHLAITAGSTPKRMY
                     ELIVEEMKEKAPLTNVSYYNFDEIPIGDEKYGVTIANLKAMYFDPAGIPEEQIHMLDT
                     KNYTDHEAHLKAVGGLDAILIGIGEDGHFCGNLPGVTKFGDETRLVSVQSRPDMFDIL
                     LGEVGGDVEKVPEYYVTMGPKSVMHAKEVILFANGKKKAAIIKKALQGPVTEDIPSSI
                     FQLHPNFTVVLDEEAASELNI"
     gene            13533..14267
                     /locus_tag="U0280_000199"
     CDS             13533..14267
                     /locus_tag="U0280_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2270163.1"
                     /translation="MEPLFSIGEMAKKSQLSIQRLRYYDKIGLLVPAFTDPTSGYRYY
                     KTAQEEQLNLIQALQYMGFSLQELKQYLDKNTSESLPDLLIKYQQKLMDEEARIARKK
                     WLIDRYQGLLKRETDTTKPLTAVRLLLTEPLLTPVHADILNDPAFHQEVQKTVSRLGL
                     SKSYQQFPGYCILDGQTYLFIELDHSIGAPGERRLLSSERQAFVTPQNWETPPENENY
                     LLQETVAWINQELVRGYSYETKLTFE"
     gene            14321..14782
                     /locus_tag="U0280_000200"
     CDS             14321..14782
                     /locus_tag="U0280_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2270164.1"
                     /translation="MEIKQIKAKDTQDIRHRVLRPEQPEENAIYPNDDMEGTFHLGAF
                     EKDVLLGIASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLADGEAKIWKRGA
                     DIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN"
     gene            complement(14802..15245)
                     /locus_tag="U0280_000201"
     CDS             complement(14802..15245)
                     /locus_tag="U0280_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM2270165.1"
                     /translation="MAKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGL
                     AKENLENTTVHGGFTVLGANLFCSDSFGKEVKPSNQISIMLDSNSEDPAAVADADAFF
                     EKVSSSERVTVTLPFEEQFWGGKMGQFVDEYGISWMIHTQPYSKL"
     gene            complement(15303..16655)
                     /locus_tag="U0280_000202"
     CDS             complement(15303..16655)
                     /locus_tag="U0280_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2270166.1"
                     /translation="MKEQSKRLGEDSIPSLMARLSIPAFIGMFVMGMYNIVDTIFVSY
                     GVGPSGVAALSIAFPVQMILMAMAAMFGIGGASIISRSLGAGEQKQADKVFHQVIWLV
                     LISSIFIAIVTFIFLDPLITLFGAPADIHDIASDFLSLILLGAVFQTFAMAMNNIVRS
                     EGNAKTAMLTMIISAILNMILNPIFIMGFGMGVRGSALATVIAQAVGAIWLLIYFLSG
                     KSTLSLKGFSFRMDFPLIRRIMAIGFPSFIMMSAGSIVTVAVNWMLNIYGGTMAIAVY
                     GIANRIASFVIMPINGVTQGMQPIVGFNYGSRQFERVMKAVKVSMIAATVMSLIAWGL
                     VEIFPGMLVRIFSNDPELIAQGTNAVRFMLLAAPTIGFQIVCGGLYQALGRARISFII
                     SLMRQIICLVPLLLILPQFFGLDGIWYAFPLADLGAFTVCLVIMSKTWRRIFKNPEIV
                     "
     gene            complement(16652..17101)
                     /locus_tag="U0280_000203"
     CDS             complement(16652..17101)
                     /locus_tag="U0280_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2270167.1"
                     /translation="MADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLY
                     KEDGISQESMAKRFMVDKASVTRHIKRLEELGMIRREIDAKDRRIQRIFVTETGFQMR
                     DLIEEVTAEWSALLTANFSEKEKDDLMHLIGRLSDNAIIAVEGGESE"
     gene            17271..18152
                     /locus_tag="U0280_000204"
     CDS             17271..18152
                     /locus_tag="U0280_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HEM2270168.1"
                     /translation="MHIKILKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLS
                     EEEAMLLHTLFPEPLPTFPKESTQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTK
                     NMLQEWQKALLSFFSPEAELIMFSTNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQ
                     STFFMGLFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRMKESLITNEL
                     NDLFHQDDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDG
                     LLLAYLSTLQTNNSNHE"
     gene            18237..18692
                     /locus_tag="U0280_000205"
     CDS             18237..18692
                     /locus_tag="U0280_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003768635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2270169.1"
                     /translation="MTKNNISFYVVDASEELTMNIKEASEKSGVSADTIRYYERIGLI
                     PPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELL
                     KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSNS"
     gene            18692..19096
                     /locus_tag="U0280_000206"
     CDS             18692..19096
                     /locus_tag="U0280_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEM2270170.1"
                     /translation="MTTLENSVIFDKGELITNDYFTGNAYLKMLVPEDTVYNCPIGNV
                     TFEPGARNNWHKHDGGQILLVTGGTGYYQEEGKPAQLLREGDVVTIPKDVKHWHGATK
                     DSWFVHLAISTNVELGGTTWLEPVSNEHYNNL"
     gene            complement(19139..19750)
                     /locus_tag="U0280_000207"
     CDS             complement(19139..19750)
                     /locus_tag="U0280_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2270171.1"
                     /translation="MYKAIIFDVDGTILDTERAVLHSLQAVLAEEGLSYELDELRFVL
                     GITGAAAVEQLNILDPEKVLDKWIEREATFIEEVEVFEGIHKVLHAIPESGVVTSKNA
                     LEMEKGFYPFNIQDHFQAIVCASDTENHKPHPDPLLKGLEILGREPHEVLYVGDSSYD
                     MKCAHAAGAHFGLALWGAKTTDGFEKAELVFEKPEDILAYVSK"
     gene            complement(19764..20132)
                     /locus_tag="U0280_000208"
     CDS             complement(19764..20132)
                     /locus_tag="U0280_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiR family transcriptional regulator"
                     /protein_id="HEM2270172.1"
                     /translation="MKLDGVCKINSALGMEYQFGEFYIDRDYLVFDQDFSLGMKKRQT
                     FPVAKLGHIALVREEEEIMLTFSCDNIEFEINGNSHDNLREFRDLLQNKGTNSAEIQK
                     AESKKKARYTTHHYHNFAKS"
     gene            complement(20215..20967)
                     /locus_tag="U0280_000209"
     CDS             complement(20215..20967)
                     /locus_tag="U0280_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2270173.1"
                     /translation="MSATSLYRLFAPQIEFLSPAEKQVFFYIDNHISTIEKMSLTSLA
                     ESTNVSTTTVIRMCHKLKLSGFSELKFLLHSDKTETKPLSKDYSSTFLEKIRLGIEQL
                     PKKEIEQVATRIAYAPKIYIACLGMTKTLGEYFSKSLVTSKKNVVFTYDSFIIDILPQ
                     IVERDDLIIIISESGGTENTLSLAEHLKYNLSNVIAIVNNPNAQISQYVETIIYASSE
                     EFDEDSFKHHHAPLLIVIDLILNIFEQQKKLI"
     gene            21133..23091
                     /locus_tag="U0280_000210"
     CDS             21133..23091
                     /locus_tag="U0280_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2270174.1"
                     /translation="MKLSDITSEPLIFLDKDWRTKEEVFDGLIDALHNQGVLSDKNEF
                     KKAVLEREKISETGLEKGFAIPHGKSKAVKKAAFAFARINQPINSWGSIDPTNEVKYI
                     FLLAIPENEAGSTHLELLAALSKRLLDPAFIESISTAPTVNEFITVLDSEQQEDEKVD
                     YTRKIVAITACAAGIAHTYMAAEALELAGKELGIEVIVEKQGANGIEDRITPEILKGA
                     EAVIFATDITAKDKERFAGMPFIQRRVAEPLRSGKEMIETVLSKPDGYVKADTDGSEQ
                     QFDNNKSSVFSQIYRGILTGISYMLPVIVAGGLMIGIGQLGATAFGLEKVIGNPEYAT
                     NSNQLIVIFHYLGLYGNMIMKFMYPVFGAFLAYSIADRPGLAPGFIGGAFAAGLHYTF
                     WGIDGGIPSGFFGVLILGIIAGFVAKFLNEKIKLHKNLQAMKPMFLIPGITVLVLFFV
                     NYYVVDPVFGGLNAWLQELIIQNQDASAVLLSTIIACLTAFDLGGPVNKAAGAIAIGL
                     AADGIFPLTARVLAIVIPPIGLGLATVLDKYVVKRRVFDENLRVAGTTSIFLGFIAIG
                     EGAIPFMLQNPLITIPINMIGASLGAVTAVLLGAVQWLPLPAIWGWPLVENFWAYAIG
                     LIVGIAFITFANIFVRYGLITRKENKIK"
     gene            23152..25800
                     /locus_tag="U0280_000211"
     CDS             23152..25800
                     /locus_tag="U0280_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM2270175.1"
                     /translation="MKKNKIVHVVAHSHWDHEWYFTMEDSNILLIENLDYLLNVLETK
                     DSFASYSFDGQMSVIERYLDIRPENKARVEKLIQDRRLFVGPWYTQTDSLLVKTEAVI
                     RNLLYGYKMGEEFGHSMSIGYSPDIFGQHAYLPAIYKSFNMEHSIFQRGVYNDQVQDD
                     LNFHWTSPDNKSIPTNNIFFGYGPGKFLSSEKSYVETRLLPILDRLAEMNTHTDVLLL
                     PAGGDQVLVRENFPEIVAELNEMDLGYTFILSDYEAFMNDAWTSTFPNEITGELLACQ
                     KSRIHHTCRSERYDIKRLNYLVENRLVNILEPLATMANKFGIKYPKPWLDIIWKKLFD
                     SHAHNGIGASNSDDANHDIVVRLTSALRMTDGLINLLKKQITKAVSQEMGDENIALLF
                     NTNPVAEERTAKLTLFTPEKSFQLFSGDAEVTFSVVHQEKLDGGRKVIVTAKGEKEVA
                     VPDYYRTEIYLKSGLIPALGYKTLQVKAVTTEMDQLISISKQTIENEKIIVQFENGKI
                     NLLNKEQQSIINDLIRFENVADAGDSFDFSPLEGDQAIYIETSELLTVEKNHLYSKMM
                     LKHTALVPKDLEARAQKTSTETFEILTEIELFDGEEFVRVRHTIDNKVKDHRIRALIK
                     TNVAEPKYSYADQGYSLMKRSVTNPYLANWREDKFVEAPVPIFPVENIVAVSEEDATL
                     ALLVGGIKEYEILPKTAEIALTLFRSNGLLGKDDLMWRPGRASGINNKVVPTPDGQML
                     EEMIFEYAVYVQPEKLNEQTLYAQSNIFEGHTETYHLQNLNTFEERLERFEVDYPIDR
                     LPAQNSIFELDNPNVFMSTCKKSWDGTGTIIRLFNPSDKEETVRWTTNASSFEVSLAE
                     EKIAELKENTICIPKKGFATILLEGE"
     gene            25802..27484
                     /locus_tag="U0280_000212"
     CDS             25802..27484
                     /locus_tag="U0280_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HEM2270176.1"
                     /translation="MQTELVNQIEVKLRKIYQAAYQPAYLEKMLACAENYSNNARGSI
                     DTISEKNVYLIAYGDSIFEKNKHPLQTLNEFLQEYAQDVITDVHLLPIFPSTSDDGFS
                     VTDYKQIDEQLGDWDDVQKMSENFRVMLDFVANHMSKSSDWFKRFSDNEAPYNQFFIE
                     KNSQFDYKNVTRPRTSPLFHKYENGKELWTTFSEDQLDLNVRNIDCLVALTDVLLFYA
                     SKQATSIRLDAIGFLWKTSGTTCMHLPETHEIITLWRLLIDELYPNLQIITETNVPHE
                     ENISYFGDGENEANMVYQFPLPPLVLHTFTCHDTTKLSKWAKSISQVSSTATYFNFLA
                     SHDGIGMRPATGILSDEEINSLVQKAVQNGGQVSYKDNADGTQSVYELNINYGEALQN
                     LGEDTTEELVTKKIIAAHSILLTLQGIPAIYYHSLLGSKNDLVGYEESGINRRINREK
                     LEKNQLVHELETDTYRQTIFTSLKKLVPIRRNHTAFSPFATQEILDLGPDVFAIKRES
                     EEECIYGIINVTSHNIRKTLAFSGTNLLTNQPVTSELELTAYEVVWIKKAVQ"
     gene            27481..28614
                     /locus_tag="U0280_000213"
     CDS             27481..28614
                     /locus_tag="U0280_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM2270177.1"
                     /translation="MKIVIAPDSFKESATAVEVANAIKKGWTKARPADQISLAPVSDG
                     GEGFLTVLSESSEVELFQAEVTNLNGHKITASYGILASQETAIIESANTIGLDLIPAV
                     DRNPAYASSKGVGELILAALNHNVKKIIIGLGGSGTNDGGAGLIQALGVALLDKNKQP
                     IPPGGIHLQELAYIDASNLNPKLKNIQFQIACDVTNPLLGENGATFVFGAQKGATPEM
                     LVQLERAMQNYGAKLDQFSSQKITTKKGAGAAGGIAAGLMTFLNTDVLSGSALVMELS
                     NMKDKMKDADIVIVGEGRMDKQSMMGKIPVQIAQEAKKQGCFVLAIVGSLALENNIAQ
                     QHGIDAFFPNIPEITDLPTLFENTTKNLERTAENIAKLTLIGK"
     gene            complement(28619..29575)
                     /locus_tag="U0280_000214"
     CDS             complement(28619..29575)
                     /locus_tag="U0280_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2270178.1"
                     /translation="MPNIKEIAKLARVSVTTVSRVLNNHPYVVEEKRARVQAVIDELD
                     YSPNRSAMDLARGKTNTVGVIIPYNDHPWFDKIVNGILEVAFKNRYSVTLFPTGYDPK
                     EEEKYLMRLKTKQVDGLIITSRANNWDVILPYLAYGPIIACEYVESKEVSCSYIDRVK
                     AYRAGFQFLEDEGYKKVAFTAGRASRESTSTYGKINAYEQVFGSVGDNRFLSECYTLE
                     DGLKAGEHFFAEGKDWPDAIYANGDEVAAGVMYHVKKLGLRVPEDVAILGQENLPIGK
                     VLEITTLDHNLKKLGENAFTIFEQGKLQRIKVEHELIRRKTV"
     gene            complement(29643..30977)
                     /locus_tag="U0280_000215"
     CDS             complement(29643..30977)
                     /locus_tag="U0280_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM2270179.1"
                     /translation="MNPDPESQQIILQLILIVVLTMLNAFFASAEMALVSLNKNRVKS
                     QAETGDKKAVMLAKLVDDPSKFLATIQVGITLAGFFSSASAATSIATRLESVFGGSSF
                     AKELSIIVVTIVLSYITLVFGELYPKRLALQKSEKIARVSVRPIMAVGVVLRPFVKFL
                     SFSTDILVKLTRMEKNTDNEKMTREEMQLLIETGRRDGVIEVEELQMLRGVFEMDNKY
                     AREVMVPRTDAFMIDAETESEELCDALLSENFSRVPVFTGDQDSVLGILHMKDFFAEA
                     RKSGFENIDVKALVKDAYFAQETMFIDDLLKNMQRTRNQMAILMDEYGGVAGIVTVED
                     LLEEIVGEIDDENDVFSDEVKKIDETTFIVEGRMPLDDFNEMFHVELPSRGVDTVAGF
                     VLTLTGTIPEEDDKVVVEYGTLRFTVEEMNDARLVSVRVEKDIQTSELEQMA"
     gene            complement(31095..31784)
                     /locus_tag="U0280_000216"
     CDS             complement(31095..31784)
                     /locus_tag="U0280_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HEM2270180.1"
                     /translation="MNKLNEALKKAEHIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP
                     EYMLSHTCLVREPEKFYQFVTENMYYPDAEPNAIHTKMAEIEAEKDVTIITQNIDGLH
                     EKAGSKKVVNFHGSLYHCYCQKCGMSVTAEEYLKSDIHSGCGGVIRPDVVLYEEAIPE
                     SAIDQSLAAIRQADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKEQISLPYPFEMM
                     ESDAVKVFAEI"
     gene            complement(31777..32067)
                     /locus_tag="U0280_000217"
     CDS             complement(31777..32067)
                     /locus_tag="U0280_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mitomycin resistance protein mcrB"
                     /protein_id="HEM2270181.1"
                     /translation="MPTELIKLPGIGKKMVLMLNEIGVEEVADLKGKNPLELYEDTCD
                     KRGERMDPCVLYTYRCAVYVAETDEAEQDVDLRKWWNWKDKQHINERNLKNE"
     gene            complement(32057..33265)
                     /gene="lde"
                     /locus_tag="U0280_000218"
     CDS             complement(32057..33265)
                     /gene="lde"
                     /locus_tag="U0280_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Lde"
                     /protein_id="HEM2270182.1"
                     /translation="MENWKKNLYVVWVGCFLTGTGLNLIMPFLPLYIEELGVHNPDQV
                     SMWSGIALSSTFLVSAIMSPIWGKLADQKGRRIMLLRAALGMAIAMILMGLVSNVYQF
                     VGLRLLMGIFSGYISTANALIATQVPRHRSGWALGALSTAAVSGVLIGPLIGGALSDT
                     FGVRPVFYITGALLLGSFFLTLFFVKEKFTPVEKKEMRSGKEVFLSLKNPGLIISLFI
                     TTMMIQIASNSVNPILTLYVRDLAGNAQNIAFISGMIASVPGVAALIAAPRLGRWGDR
                     IGSERILLGALIGSMLLQIPMAFAQNPLQLGILRFLLGLTDGALLPAVQSLLTKNTPR
                     EVSGRIFGYNQSFQYIGNVIGPLVGSSVAAHFGYGDVFLVVAGFIFINVLISFYFNRK
                     MHGEKGNHAN"
     gene            complement(33382..33729)
                     /locus_tag="U0280_000219"
     CDS             complement(33382..33729)
                     /locus_tag="U0280_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270183.1"
                     /translation="MNQTFIVKKEHVSQYPNPLFVNKNESIWVFEEDTEYPGWIFCKV
                     KSTGKEGWVPKQIIQLSNDGKSGTVSEDYSARELNVKPGDKLESNRELNGWVWCVTEE
                     NEAGWVPRGNLEA"
     gene            complement(33748..34392)
                     /gene="fsa"
                     /locus_tag="U0280_000220"
     CDS             complement(33748..34392)
                     /gene="fsa"
                     /locus_tag="U0280_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEM2270184.1"
                     /translation="MRFFIDTANVEEIKKANRMGFIAGVTTNPSLVAKEGRDFNEVIQ
                     EITSIVDGPISGEVVSLEADEMIAEGRVIAKIHPNMVVKIPMTGEGLAAVKVLTEEGI
                     KTNVTLVFSATQALLAARAGATYVSPFLGRLDDIGDDGLVLIRDIADIFEIHGIPTEI
                     ISASVRHPIHVIECAKAGADIATVPFKVFEQMLKHPLTDSGIDKFLADWEAAKK"
     gene            complement(34534..35223)
                     /locus_tag="U0280_000221"
     CDS             complement(34534..35223)
                     /locus_tag="U0280_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2270185.1"
                     /translation="MLFLKELESNLTVSKLMELCFEHPSYKDYCSVISTKKGEVLESL
                     SPAGTKVYFVLSGIYGMIVEEDAEMEEESYKESIVRFLQKGDSFGLYHLFYDEWSPHV
                     SMQSLGHGEVMEVDSNFLFSIFDKKDENNFFMIKVMAEELREAHTFAKLSFLKKEERI
                     RKAILKCAQTLGTFSDNGILLPREITQEVLARYTNTSREYVAHTVMHLIKEDIIRNRP
                     KPLLVMDKTRL"
BASE COUNT        10656 a         7654 c         6382 g        10536 t
ORIGIN      
        1 atagttagct cgggccaggc gacctcgcgg cacatgagaa gcactgctta atgctgcttc
       61 cttccggacc tgacatggtt cacaggttcc cattgcgcaa gacccaacct tcaacaccac
      121 ttgtcaaggg cagaccaaac aattacgatg cctcaaatga ggaattcaac cccgctagag
      181 cggattgcgg gttacagggc gccgctacct ccccgtctag cacgacaaat ttgctaccaa
      241 taattaaatg ccaaataaaa attatttagc gcaaactctg aaaagagctc aattactagt
      301 gtaccttttt cgtgtaaaaa gtgcaagcgg gaacacggaa atatttttta acgtaagtaa
      361 acactcatga ttgctgcgat aatcgtacca actacacaaa tacctactaa tgttaaagct
      421 atccatacta tttttttatt catggtttct ccccctcgtt atcacttttc ttttagtgat
      481 tatatcatga aatccaaaat ttagctgtta atatcaaact tcttttgcca actatttaat
      541 tggctgtagc tcgacattaa ctgtgtggtt acttgtttaa aaatcagacg taattccgcg
      601 tatttaagga cgttctcact tggatgatat accgctttaa taggcagcgt atgttttaga
      661 ttcaaatctt tcaaaattcc gagtgagcgc ataccaataa ttgctgctcc taaactcgag
      721 ccttctatcg tatgcggaac acgtatctca cggttcaaaa tatccgctag aagtctacac
      781 caaccatcat gcgcagaaat cccacctgtg acgtaaataa tgtcatctgg agccgaaacc
      841 gcctcataaa cttctgcaag attaaaagca acaccttcca aaatcgcacg aataaaatgg
      901 gcttttgtat gattaatcgt cagcccaaca aaacctcctc gaatatcatt agtccaaaat
      961 ggtgcacgct cgcctaacaa atatggctgg aataaaagac ccgcagcgcc cggaggaact
     1021 tcctctattt ttgcaataaa gcttgcgaaa tcacgcctac taatttcagc ttcagagcca
     1081 aattgttgca aaccccactc gactactttt ccaccattat tcactgcgcc gcctgcgata
     1141 aagtatccat caccagctcc ataacaaaac gtccgaccac gagaatctat ttggaattga
     1201 ttggtaagtt tgcgaactgc accacttgtg cctactgtaa tcgtaacatc attttggccg
     1261 gtcgcttgaa taccaatatt agctagcgcc ccgtcactcc cccctacaat gaatggtaaa
     1321 ttttctggga ttcccattaa ttcagcgtat tcttttttca caccagttaa ttgatatgtt
     1381 tctggtacaa cttttggcaa gagatcagga gtcaatttga caatttccat tgcttcaaat
     1441 tcccagtcgt gctccataat gttatatagt ccagtccccg atgctaacga ttcatccatc
     1501 acccaaacac caaataatcg gtataaaata taggatttaa tatcaacaaa tttttctgtg
     1561 cgtttaaata aagtaggctt ttcctccttc aaccagcaaa ttttggcaaa ggggctcata
     1621 gggtgtatcg gcgttcctgt ggcctcatac agttggaata agtaattatc cctttttact
     1681 ttttcaagcg tctcactgct tcgtccgtcc gcccaagtga tacattcagt caaaagctct
     1741 ccattacttc caaccataat taaactatgc atcgcagaac taaacgaaat ccccgctaat
     1801 tcttctttat tcacattttt catcacagct tgaatagatg ataaaactgc ttcgaaaatt
     1861 tccgtggggc tctcttccgc tttcccagtt tcatccgtta ttagttcata atgcgtcgcc
     1921 tgccggaaaa tcacttctcc tcgttgatta aaaagtactg cctttgtgct tgaagttcca
     1981 atgtctacgc ccattatgta tggtttactc gtcaaacaat tcaccccgcg ttttcgtttc
     2041 tttttattat acgtcaaata gaagaaaatt tggggctagg ctacttagct tttttgccaa
     2101 acaaaaaagc tagagaaatt ctctagctta atttataccg taaaaagttt ttattcggct
     2161 ttcttcacct aacacaataa gtgtattttt atccgcgaat tttagcactt cttttgtatt
     2221 ggcttcactt tgagcgacgc aacctaatgt gtaattgtat tttggtgaat caacatggta
     2281 aaacacagcc gatcccttac cttttacacg tttagcgttg tatttcactt ccattccgta
     2341 tttgtactgc ggaatcttca ttttttcatc tgcagaacta gaggaattgc gttcttgcca
     2401 agtgttatag gatttgtcgt tagagttaga aatccaataa cttctattag taatcgctct
     2461 gaatgtcagc ttcgtaccag gattaccctt ttgcccaaat gcaatgcctg tacgataaac
     2521 gccaactgga gttccagaac ttttttcaga gaactttgga tcaaatcccc atttgccaat
     2581 atgactggta aaatgacgaa cttcatacca atttcctgca ctattttttt ggaaaaagta
     2641 ggttgttgcg gtagtattct ttggttttgt ggtgatgatt gcctttttac tgttccaaag
     2701 agctggaacg gtgtcagcaa ttgttggttt gccgacattc gtaaaggcac gcgagtcaat
     2761 ccatccgatt gtagtatttc ctagcttaca ataataccat ttagctcttg ctgtttttcc
     2821 ttcgcgcgta ataatcaacg tcttcttgtc atatttctta gctgaaccga ggtacttaac
     2881 actactactc gttttgtaca tcttgctatt aataccatca tttcgttttg actgatttac
     2941 tacccctttt agattaactg ctttgtcata aatgattttt tcgtaggatg ctgcttcggc
     3001 attaaaggag tgaccaagta ggctaaccat taaaacaata attaaaccgc ttaataactt
     3061 cttcattatt cgctccttat ttttgagtta ttccctatag caattagttt attttttacg
     3121 tttcctaagt aataacactg ccacaagaat aactataaca cccgctacca cgaaaatcca
     3181 ttctgtacct ttgtcacctg tgcttggcaa atctgttttg tcatcttttg taacttttgc
     3241 aacatcagca ggttttgctg ttgcgctttt gaccgcgttc tttgtttcga ttttcttcac
     3301 tttatctgga gctgttacga ctgcttcatt ttgttttttc gctgggactt gataggttac
     3361 ttcttcacta taattacccg attcatcaaa agcatatgcc gtaatttgtt ttggtgttgt
     3421 cgcccattct gcataaaaat aaccatcttt atccgcagtt gttgttcctt ctccaaagtt
     3481 ttcatctgcc ggagaactca tatatacact agcgaatggt tttgttttac ctgtgaaaat
     3541 ttttgtttct aaatcaaaat tcatatctgt aatagtcagt tgggccgttt tttctttgac
     3601 taagtaattg agtttgactg ctgttgtttt gccgtcttca ctatctccaa ggagcgtgac
     3661 ttcttggata cctgtttgtg cagtacttag tttagaattg gctgctaagc gataattggt
     3721 tagttttgta tcggtgtaat cagttaatgt tgcggtgaaa tctttgagat caatcttact
     3781 attttgttca tacgagtaaa cttcttgaga atcggtaata tctatcgttg tttgaacttt
     3841 gcttttttgc gatgttgtta cagtcgtgtc ttttgtcggt actgctggtt ctggcttttc
     3901 ttcagtaatt atgttttcag tagtatctgt tgttttttct tctgtaggtg ttgaattgtt
     3961 accattttca tttgtttcag cgcttgctgc caatgagaat ggaatgatta gacaagttac
     4021 taacgcagta agcactagcc cgtggaattt tttcataata aattcccctt tcattttgct
     4081 tagtttaata ataagcagaa atgtgatgaa agtcaatttt aaattacaat attgttacaa
     4141 atattaaaac tgcgatacaa aaaaaccttg ctaagattgt acttagcaag gcttaatttt
     4201 ataattcaat cgggcgatct agttgataaa gtcgtttata gcgtggttct tctgccatta
     4261 attcagcatg aggtccttcc attaacgttt ttccctcttc taaaaacaag acgcggtcca
     4321 ttttttcggc accaactaaa tgatgcgtta cccatatgag tgacttatct gctaacgttt
     4381 caaagatagt cgctagtaaa tcgcgttctg taattgggtc cagaccaact gttggttcgt
     4441 ctaaaataac gattggtgtg ttttgtagta gaatccgagc gagagcgata cgaccacgct
     4501 caccacctga aaaacgttca cccatttcac tcatttgtgt atgatagcca tctggcatgc
     4561 tcattataaa atcgtgcaac tgaacttttt tcgccgcttc gtatacttct tcgtccgatg
     4621 catcttgatt tccaaggcgg atgttgttta agacggtcgt actgaaaagg tgcgctttct
     4681 gatttaacat tgatgtgatt tcaggaattt gcggtcttaa attctccact tcaactccgt
     4741 tcatagttac ttttccagct gttggcagta aagctccttg aactaattta agaaaagttg
     4801 atttccctgt tccacttcga ccgataatcg ccactttttc accttgttgc aatgtgaagt
     4861 caaaaccatt taagatttct ggtgactttt catcgtacgc gaaagttaga ttttctgctt
     4921 ttaaaacaac attttctgtg ttgattcgct ctatttcttt cgtttcttct tcaaaagttg
     4981 gtagcgtcgg atcttctatt ttgtctaaac gagcaagcga gtcttggtat aatgatttgt
     5041 cactgatagc acttgaaact ggtacaaacg cttctgctag cgccataatt gccaaaacaa
     5101 aagcggcaat catcgttcca gaaaatgctc catcacgtga ttctgctgta ctccaataaa
     5161 ccatcacgat aaccataaag ccaacaacta actgactaaa gaaatcgcgc caattaacaa
     5221 aatgaaactg tttattttct gttcgaagca tgtctgcctc gtctttttcg tagttagaaa
     5281 taaatgtttt ttcacgtcca ctgaatttcc aatcactaat accaaacact gcatcggtaa
     5341 atttttgata taaactattg cgcccttgtt ttagataagc attctttcca cgagcatata
     5401 aaagtgatac ccatggaaga acgagcacaa ggaggccaat caagagtaca aagagcgcag
     5461 caaatggaat cgagaatgct ccaagcgcga taacgacgcc cgcgtaaagc acgaggctaa
     5521 caattgccgg tagcattgta gttaaataga aattttgtaa atgctcaatg tcacctgcga
     5581 ggaggcccag aatatcgcca gttttataac gtgattttag tagtaacgct tgcggctcaa
     5641 gtaaacgata caagcgaaca cgcatctttt ccagaattcg aaggacaagc gaatggctcg
     5701 aaaggcgttc cacatagcgt gaaacggagc gcataatacc aaatgcacga acaccaactg
     5761 tcgaaatata aaccgccatg atggattccg gcatcaagga cgatttcgaa attaaatgtc
     5821 cagacgtaaa cataagtgct ccagcagagg caaaagttag tgttccaagg aagatgacaa
     5881 gtaaaaacaa gccgcggttt tctttaatat atgggataat ccagctactt ttccgcatca
     5941 tacttcctcc aattgggctt tgactaaatt gtaatagaaa cctttacgcg aaagtaattc
     6001 ttcgtgcgtt ccagtttcaa cgacagcccc gtgatctaaa acaataattc ggtccatttc
     6061 gagcatccag tgcaaacgat gcgtcgcgaa aaagacaagt cgattttcaa ataagtctag
     6121 cattggtttt tttaactcat attccgtttc aatatctaag tgggctgttg gctcatccat
     6181 taacacaatt ggacgatccg ttaagaatgc acgagccagt gcgacacgct gttcttgccc
     6241 accactcagc atccgcccag cttctccgac aagcgtttca taaccatctt ccagtcccgc
     6301 tacaagctta tttaaaccgg cagattctgc tgcttttttc atttcctcat ctgtagagtt
     6361 aggatgataa aagcgaatat ttccagcaat tgtatcgtgg aaaaggtatg gatgttgcgg
     6421 aatataagtg acttgggttt gccaatcact cgaagcaagc gacgcaccac tttccccatt
     6481 ccaacgaaaa cctccagaag tcggggtcaa aaagccactc aaaacatcaa tcaaggtaga
     6541 tttcccagcg cccgtcgcac caataatccc aactttttca aatcctttta ccgtaaaact
     6601 ggcttcatga agcgaatcag cagcatctac atcatgcttt acagtaatat tttcaaacga
     6661 aaactccgta ttttcagcaa aagttgttaa aggtagtgca ttcgtttccg gtttttctgc
     6721 tttggcttgg tcaataattc cttgaataac gcgaccagcc tcttgaccat caagtgtagc
     6781 atgataatcc gagccaactt cacgaactgg taaaaagtat tctggcgcaa ggattaggac
     6841 actaagcgca attggcaaat tcatgttacc gtcaatgaga ccaagaccta ggaacagcgc
     6901 aacgagcgca atcgataaca tcgtaaagaa atctagcgcg aatgacgaca taaatgccac
     6961 acgcaacgtt ttcatcgtag ctttacgata acgcgaacta accgaagcaa ttttcccttc
     7021 atggtcgtga ctaagcccca aataccgcaa cgtttccaaa cccttcaacg aatctacaaa
     7081 gtggttagag agcacgcgat acgtttcaaa ttgagaatct gcttgttttt ttgcagctaa
     7141 tcctagaata atcataaata caattaaaat cggcaaagta atcatcaaaa taaaagcaga
     7201 ggtccagtct tgaaaagcaa tatacaccca aatcattgct ggaataattg ccatattcat
     7261 cattttaggt aagaacagtt ccaagtaatt tcggaaatct gctacacctt ccataaccat
     7321 cgtgacaact ttcccagttc cttccgctcg agcaaaacgc ggtccaagcg caaacaaact
     7381 atcaagcaac tcttcccgca ttgttttcgc aagttttgca gcgtaacggt aaacgatttg
     7441 ttttttccat acgttcaaaa agtgacgcaa gaaataggcc cccgcgaaga gacctatttg
     7501 tattgtgact gattgaaacg cgtgctcgtg aaataagtca gtaatcgcac gagctaaagt
     7561 tatcgccatc acgataatcg cagcaccttg aactagcgtg aaaactgcga gaatcgccat
     7621 tattttttta attcctttgt agttccttaa atcttttccc attaatacgt cattttctcc
     7681 ttactagaaa cgcgcttacg gaaaacatag tagctccaaa tttggtaacc aagaacaaac
     7741 ggcagtagcg taacggcaac tatcgtcatc acactaagcg aatattgtcc ggaagctgca
     7801 ttttctatag ttaaatcaaa cgcactgttg atagaactga tcattacacg tgggaatagt
     7861 gacacgaaaa tcgtcgcaat cgtgaagaca attccaagtc cgccgaatgt aaatgccaaa
     7921 atatcacgat ctttccaaat aaacagggca gatagcacgt acataacgac tacaattcca
     7981 atcatcagtg gtacaagtac aggtctaact tggaacatgt cagtattgaa gtaagcaagt
     8041 acaacgaaaa ttactagagc tggtacagta ataaaccaaa cacgtttcgc catacgacga
     8101 gcacggtctt gaatatcctc ttctgtacgt aaagtaataa atagtaatcc gtgaagtagg
     8161 cacatgagcg taatcgtcac gccaccccat acggagaata cggtaatgta atcaaagaac
     8221 ccagcgtaca tatccatatc actattaatc ggcatacctt gaatcaagct agcaaataat
     8281 acaccaaata ggaatggcgg taaaatacta ccgaagaaaa taacccaatc ccatgttttt
     8341 atccaaagcg gtgaatcttt ttgaccacgg aattcaaaag aaacaccacg gccaattagc
     8401 gcaagtaata agaatactag cggaatataa taaccactaa acatggttgc ataccagtta
     8461 gggaaagcgg cgaaaatcgc gccccctgca gttagtaacc aaacttcatt tgcatcccag
     8521 aacggcccaa tcgtattaac gagcacgcgg cgttccagtg catttctagc cataaatcgt
     8581 gtagacatcc caacaccaaa gtcaaaacct tcaaggaaga agaatccaat gaataagatg
     8641 gcgattaata gaaaccataa ctcatttagt gacaaagctt tcatccccct tatcaaacgg
     8701 atctacggaa atctctgctt tttctggttt gtgtccgtct ggtccttttt taatttcacg
     8761 tataaacaag taaaccaata gaatggctaa aatcgtataa attgtcgaga acgcaattat
     8821 cgagaacaaa atttgtcctg atgaaacgtt tggcgatacg gcatcagcgg ttttcatgta
     8881 accgaaaact acccatggtt gtcgccctat ttctgtcata atccaaccca tggagttcgc
     8941 taggaacggg aagccaatca ttggaatcat gaaacgtaaa taccattttg cattaacgag
     9001 ttttttcttc caagcaagca cgataccgat taatgcgaat aaaatcatta acataccagc
     9061 gccaaccatg atacggaagc tccaaaatgc tgttttaact ggtgggatgt agtcaccttc
     9121 accatatttt tcttcgtatt gtttttgcag cgtgttcata ccttccacgc taccagttaa
     9181 tgttccgtaa gataagaaac ttagcgcgta cgggacattg acttcccatt cgtttttctt
     9241 ctcttctggg ttgatcttgg caatcatcgt ccacggagct gggtcagctg tatcttccca
     9301 tatcccttcc gttgctgcca ttttcattgg ttgtgtttta accaagtatt gtgcttgtga
     9361 gtgaccactg aaagccacac caaagccacc gattaccgcc atgaccattg caatttggaa
     9421 tgatcgttta aagaaggcga catcttgttt tttgagcatc ttatacgcac tgacaccagc
     9481 aatgaaaaag gccccagtgg caaatgcccc gaatataacg tgcgggaact ccacaagtag
     9541 ttgtccatta gtaataagtt gcaagaagtc attcatttct gcgcgtccgt tcttaaattc
     9601 aaaaccaacc ggatgttgca taaatgagtt cgctgctaaa atccagaaac tagacataat
     9661 tgttccgatt gaaacaagcc aaatacatgc taaatgaagt tttttgccaa gtttgtccca
     9721 accaaaaatc caaagtccga taaacgtaga ttccataaag aatgcaagta acgcttcgat
     9781 tgcaagtggt gctccgaata cgtccccaac aaatctagag taatccgacc agttcatccc
     9841 aaactggaat tcttgaataa taccggttac gacaccgact gcgaagttaa taaggaatat
     9901 gtgtccccaa aacttcgaca tttttttgta aatttctttc cccttcacga catacaacgt
     9961 ttccataaga gcaaccataa atacaagtcc aattgaaagt ggtacaaata agaaatggaa
    10021 aatcgttgtt gatgcgaatt gaaaacgggc taaaaatagt ttatccaccc ttttctcctc
    10081 ctttttgtgc taaaaattac tgcttcgttc cctgatttgt gcttccctct taaaaatcat
    10141 gtgaaaaacc gcccaaagtg acgcgttcag ttgctctgta attcacaaag cataataaaa
    10201 taatatgtaa tccttatttt tcacagattt aggaactagt taagaaagat tttcacttta
    10261 taatgagttc tatctggagt atattttatc ctattttgcg acaaatttat ttagtacttt
    10321 cgatgttatt ttgttttagt tagattgtga tatttttcgc aattattatc tggctgtaaa
    10381 tgttggtaag gcttattgct ttttatttca caatgaaaga tttaaaagta tgatttctta
    10441 caataagcat taagacctat tcaatttatt ccgttttcgt agatcttgga aaaaacttct
    10501 taacatttcg ctgctttctt tttccattaa tcctgcttct acttcacacg tatgattaaa
    10561 tcggtcatct tggagtaaat tcattaacga tccggctgtt cccgcttttg gatctttggc
    10621 tccgtaataa actttttcaa tccgcgaaag taaaatggcg ccgctacaca tcggacatgg
    10681 ttctagcgta acgtatagtt ctgcaccgct aagtcgccat gaattttgat gtttacacgc
    10741 atcttgaatc gcaagcaact ccgcatgggt cactgcattt tggctcgttt cacgcaaatt
    10801 atgcgcccgc ccaataattt ctccatctaa aacaacgact gcaccaattg gaacttctcc
    10861 aatatctcgt gctttctcgg cttcttcaag cgcttgttgc ataaagaaag ctcgttccat
    10921 ctatgcacct catttctaaa aagtcactca ttgttatttt agcatagctt ggattggatg
    10981 taggaataat ctgctcaaac tttcacagga acactttagt tgctttcgcg gaacatttat
    11041 attaccatat attaatacta ggtcctaaaa caaaattatc aaaatataca atctacttat
    11101 aaaggagagt cattatgaat tcagaaaatt taatcgctcc agaactttat aatattaccg
    11161 acgagattgc taaattcagt tctgaaaaaa ctgctttaat ttggaaaaat gagcataacg
    11221 aaacaaaaaa ttggagttac cgccacctgc ttgaacaagc gaataaattt gccaatgttg
    11281 tcaaagacgc aggcataaaa aaaggtgacc acgttatcgt catgacacct agattactcg
    11341 aaacgtacgc aatttacatg ggcttatgga aagctggtgc cattatcatc ccggcatccg
    11401 agctacttaa agcgcacgat ttagaatacc gcatccacca tgcaaacgta aaagcaatcg
    11461 tttcttacaa tggaatgact gctgaatttg ataaaattga aagcatccct tctgtttcga
    11521 aaaaaattat tgttggggag aaattatccg gctgggatca ctacgaaaca ttaatggaag
    11581 ccgcttcaac cgaatttgaa cgcgtggaaa cttcgcgcga tgatgcttgt ctgcttgcat
    11641 tcacgagtgg aacaacaggt aatcctaaag gcgttgtaca tattcacggc tggggttacg
    11701 cgcatattcg tatcgctgct gatcattggc tcgatattca cgaagacgat atcgtttggg
    11761 ctacagccgg acctggttgg caaaaatggg tttggtctcc tttcctttct gtactcggaa
    11821 aaggtgccac tggcttcatt tacaacggtc gtttcattcc tgaaaaacaa cttcatttac
    11881 tggaagaaga aaaaatcaac gtgctgtgct gtacgccaac agaatatcgc ttaatggcta
    11941 aagtaaataa tttgcgcgaa catgatttaa gttcccttcg tagcgccgta tcagcaggag
    12001 aacctctaaa ccgcgaagta attcaagttt tccaagataa ttttgatatt aaagttcgcg
    12061 acggctacgg tcaaacggag agtacactgt tgattgggac actggttgat acgccgattc
    12121 gccctggttc gatgggtaaa ccgattatgc cagaatacat ggcaattatt gacgctgaag
    12181 gaaatccagt tggtgtcggt gaaattggtg atatcgcgat gcgtagagat ttcccagcac
    12241 ttttcaaaga gtactataaa gaaccagaac gtttgcaaaa agcgattcgc ggtgattatt
    12301 tcgtttctgg tgaccgcgct atccgcgatg aagataatta ttactggttc caaggccgga
    12361 atgacgatat tattattagc tctggttaca cgattggacc gttcgaagta gaggacgcgc
    12421 tcacacatca tccagccgta aaagaagtcg ctgttgtcgc aagtcctgac gaaatccgcg
    12481 gtacggtcgt aaaagcattt atcgtcttaa aggatggtta cgagggcacg gaagatcttg
    12541 tgcatgaatt acaaacattc acgaaagaac aaaccgctcc gtataagtat ccgcgccgga
    12601 ttgagtttgt tgaggcatta ccgaaaactg attctggtaa aattcgccgc gttgagttgc
    12661 gtgatgcgga gtttgctagt gtgcatggat aatcaaaaac ccagccttcc taaatagaag
    12721 gttgggtttt cttttaaata ttcaactcac tcgccgcttc ctcgtccagc accactgtaa
    12781 aattagggtg taactggaaa atcgagcttg gaatgtcttc tgtcactggg ccttgtaggg
    12841 cttttttgat aatcgctgct tttttcttgc catttgcgaa taggatgact tcttttgcgt
    12901 gcatgacgct ttttggtccc attgttacgt agtattcggg gactttttcc acgtcgccgc
    12961 caacttctcc gagcaaaata tcgaacatat ctgggcgtga ttgaacggaa acaagtcggg
    13021 tttcatcgcc gaatttggtt acgccaggta agttcccgca gaagtgacca tcttcaccaa
    13081 tcccgattaa aatcgcgtcc aaaccgccaa ctgctttcaa atgcgcttca tggtctgtat
    13141 agtttttcgt atctagcatg tgaatttgtt cttctggaat tcccgccgga tcaaagtaca
    13201 tcgcttttaa attggcaatg gttacgccgt atttttcgtc cccaattgga atttcgtcaa
    13261 aattataata gcttacattt gtcagtggtg ccttttcttt catttcttct acaatcagtt
    13321 cgtacattcg cttcggtgtg gagcctgctg tgatggctaa atgaaccaac ttgtcttgat
    13381 acattttccc taaaagcagt tgcatcgttg ttttactcat attttcgtaa tctttttcca
    13441 caataatttt catttttttc acctctcgct ttgaattacc tttatgataa agtgtatagt
    13501 aactatagag tcaagacgaa agggtgataa atgtggaacc gcttttttcc attggggaaa
    13561 tggcaaagaa aagccaactc tccatccaac gactgcgcta ttatgataaa attgggcttt
    13621 tggtcccggc ttttaccgat ccaacttctg gatatcgcta ctacaaaacg gctcaagaag
    13681 aacaactcaa cctcattcaa gcgttgcagt atatggggtt ttccttgcaa gaactgaaac
    13741 aatacctcga caaaaacaca tcggaaagct tgcccgattt gcttataaaa taccaacaaa
    13801 aattaatgga tgaagaagct cgcattgccc gtaaaaaatg gcttattgac cgttatcaag
    13861 gtttgttaaa acgggaaact gacacgacaa aacctctaac tgcggtccga cttttgctta
    13921 cagagccact tctaacgcct gttcatgcgg atattttaaa cgacccggct tttcatcaag
    13981 aagtgcagaa aaccgtgagc cgccttggtc tttcgaaaag ctatcagcag tttcctggtt
    14041 attgtatttt agacgggcag acttatcttt tcattgagtt ggatcattct attggcgcgc
    14101 ctggtgaacg gcgtttgtta tcaagcgagc ggcaagcttt tgtcacgccg caaaactggg
    14161 agacacctcc agaaaatgaa aattaccttt tacaagaaac ggtggcttgg attaatcaag
    14221 agctggttcg tggttattcc tatgaaacaa aattaacttt tgaatagata ttttagaaag
    14281 attggttata atagaaagaa ataacgtgga ggtgggcgcc gtggaaatca agcaaatcaa
    14341 agcaaaagac acgcaagata ttaggcaccg ggttcttcgc ccagaacagc ctgaagaaaa
    14401 cgcaatttac cctaatgatg atatggaggg tacttttcat ttaggcgctt ttgaaaaaga
    14461 tgttttactt gggattgcca gtttttatcc agaaaaatcg actgttatta tgaatcctgc
    14521 ccagtaccga attcgcggtg tggcgacaga acgccggatg cgcttgaaag gcctcggcac
    14581 agctttactt gcagacggtg aagcgaaaat ttggaagcgc ggcgcagata ttatttggtg
    14641 caatgcgcgg attgtcgctg ttggttttta tgaaaaacat ggctaccgca aagtcggcaa
    14701 atcgtttgtc attcctggca tcggcgaaca ttacttaatg aaaaaagtga atccaaataa
    14761 aaaagtggac caagataact aatatctggt ccacttgttt tttataattt agaataaggt
    14821 tgcgtatgaa tcatccaaga aattccgtac tcatcgacga attgtcccat ttttccgccc
    14881 caaaattgct cttcgaaagg taacgttact gttactcttt ctgagctgct cactttttca
    14941 aagaaagcat cggcgtcggc tactgccgct gggtcttcac tgttagaatc aagcataatc
    15001 gaaatttgat tggatggttt tacttctttg ccaaatgaat ctgaacaaaa taagtttgcg
    15061 ccaaggacgg taaagccacc gtgaacagtt gtgttctcta ggttttcttt tgctaagcca
    15121 aacatttcgc tttgttcctc acttactgga agccttgaaa tattcgttgc tccgaacact
    15181 tcttcataat atcctaaagc ctcttttgca ttttcaaaag ccaaatacgg gtacattttt
    15241 gccataaaaa tcgctccttt atttttgaga cactagttag aaaataccca attcgtttta
    15301 ccttaaacta tctcgggatt tttaaaaatt cggcgccatg ttttgctcat aatcactaga
    15361 cagacggtga acgcgcctaa atctgctaat gggaaggcgt accaaatacc atctaaaccg
    15421 aagaactgcg gcaaaataag taaaagtggt actaaacaga tgatttggcg cattagggaa
    15481 atgatgaatg aaattcttgc tcgaccaagt gcttgatata gcccaccgca gacaatttgg
    15541 aaaccaattg ttggcgcagc tagtagcata aatctaacag cgtttgttcc ttgtgcaatc
    15601 agttctgggt cgttagagaa aattcgtacg agcattcctg ggaaaatttc taccaatccc
    15661 caagcaatta gtgacatgac agttgcagct atcattgata ctttaacagc tttcattacg
    15721 cgttcgaatt gtctggaacc gtagttgaag ccgacgattg gttgcatccc ttgtgtaaca
    15781 ccattgattg gcataatgac gaacgacgca atccggttcg caattccgta tacagcgatc
    15841 gccatcgttc caccataaat attaagcatc cagtttaccg caaccgttac gatactacct
    15901 gcggacatca taataaatga cgggaacccg attgccataa tccggcgaat cagcgggaaa
    15961 tccattcgga atgagaaccc ttttaaagat aaagtacttt ttcctgataa aaaataaatc
    16021 aagagccaaa tcgcgccaac agcctgcgca ataacagttg caagggcaga accacgaacg
    16081 cccataccaa agcccataat gaaaattggg tttaaaatca tatttaaaat agcggaaata
    16141 atcatggtta acatcgctgt tttcgcatta ccttctgagc gaacgatatt attcatcgcc
    16201 atagcgaagg tttggaacac tgcgcctaac aaaataagcg ataagaaatc actggcaata
    16261 tcatgaatat ctgccggtgc tccgaaaagc gtaataagcg gatctaaaaa aataaaggtt
    16321 acaattgcaa taaaaatgct ggaaataagt actaaccaaa taacttgatg gaatacttta
    16381 tccgcttgtt tttgttcccc agcaccgagc gagcgggaaa taatcgacgc gccaccaata
    16441 ccaaacatag ctgccattgc cattagtatc atttgaactg ggaatgcaat tgaaagtgct
    16501 gcaacccctg atggcccaac gccatatgac acgaaaatcg tatcaacaat attatacatc
    16561 cccataacaa acatgccgat aaatgccggt atcgacaatc tcgccatgag tgaaggaatg
    16621 ctatcttcac ctaatcgttt actctgttct ttcattcaga ttctcctcct tcgactgcta
    16681 taatcgcatt atctgaaagt cgtcctatca aatgcattaa gtcatctttt tccttttcac
    16741 taaaattcgc tgttaaaagt gcggaccatt cggctgtcac ttcttcaatt aaatcgcgca
    16801 tctgaaaacc agtttccgtc acaaaaatcc gctgaatacg tctatctttc gcatcaattt
    16861 cgcggcgaat catccccagt tcttccaaac gcttaatatg ccttgtcaca cttgctttat
    16921 caaccataaa ccttttagcc atagattctt gggaaatacc atcttcttta taaagcgtcc
    16981 ataaataacg taattgacct atattaagac cagtttctag taatttttta tttttaaaag
    17041 tgctttctga acgatgaata attgcgatgg ctttcgctaa gctttcctgt ctatctgcca
    17101 tttatccgac tcctcataaa aaaatccgcc acataattag ttgcggcgtc aaccattata
    17161 gtatagcagg attttagttg actgcgcaac ctttttattt cccgggcaat aatttgactt
    17221 cctatctttc ttttgtaaaa ataaagaata gagaaggggt gctatccact gtgcatatta
    17281 aaatattaaa aaatagatat cccaatatag tcgtttcaaa aaatccaata aaatccagtt
    17341 cagatacgat ttcttttttc gaagaaccgt attattttac tattcctaaa agcaatcttt
    17401 cagaagaaga agcgatgtta ttacatacgc tatttccaga accattacca acatttccta
    17461 aagaatccac ccaattttgg ttcgatttat tgtttggaaa caaggaattg gcgatgacaa
    17521 atgagaaaga aacatatcgc attacgcagt ttcatattaa gacaactaca actaaaaaca
    17581 tgttacaaga gtggcaaaag gctttgctga gttttttcag tccagaagct gagttaatta
    17641 tgttttcgac taactatggc gttattattg aaaaatcaac ggggtcgctg cttggcgaag
    17701 aggaactaat cgccgttgcc ggtacgcttg aaaatgattt ctatatacaa tctacatttt
    17761 tcatgggtct tttccatccg ttaaatgatc gattgcgtgg tttatttgca gaagaacgtg
    17821 ccattttcaa ccataataat cgtgaggtag ttcagaccgt ggcttccgaa agtttaaaag
    17881 ttatcgcgct tcgaatgaag gaaagtttaa tcacgaatga actcaacgac cttttccatc
    17941 aagatgatac ttggattccg ctgattcaca cattatttaa aaaccaagga aacatcagtc
    18001 tcacggctaa agagcttttt atgcaccgaa ataccattca atatcgcttg gataaatttt
    18061 atgagcaaac aaacttatcg ctccgcaaga tggatgggtt gctcttagct tatttatcta
    18121 cacttcaaac aaataatagc aatcatgaat aaatgatcat ggttgctttt tcgcttgact
    18181 taaagtccac ttcaaggaat acaatcatta tagaaaatca gtaaaggaga atagtcatga
    18241 ccaaaaataa tattagtttt tatgtagtag atgcttcgga agaattaacc atgaatatca
    18301 aagaagctag tgaaaaaagt ggcgtttctg ccgatacaat tcgctactat gaacgcattg
    18361 gtttaattcc acccatccac cgtaatgaaa gtggggttcg taaatttggc gcagaagacc
    18421 tacgatggat tttatttact cgccaaatgc gccgagctgg tttgtctatt gaagccttaa
    18481 ttgattactt ggcacttttc agagaaggcg aacacacgct ggaagctcgc gccgaattgc
    18541 tgaaaaagca acgcatagag ctgaaaaatc gcattgatgt tatgcaagaa gcgctcgatc
    18601 gacttgactt caaaatagac aattacgata cccacctcat tccggctcaa gaagaactaa
    18661 aagattttaa tgttgaaagg agtaattcat aatgactaca cttgaaaata gcgttatttt
    18721 tgataaaggt gaactgatta ctaatgacta ctttaccggt aatgcttatt taaaaatgct
    18781 tgtccctgaa gacactgttt acaattgtcc gattgggaac gttacgtttg aaccgggagc
    18841 tagaaacaac tggcataaac atgatggcgg acaaatccta cttgtgacag gcggaactgg
    18901 ctactatcaa gaagaaggaa aacctgccca gttgctcaga gagggcgacg tggtaacaat
    18961 ccctaaagac gtgaaacatt ggcacggcgc tacgaaagat agctggtttg tccacttagc
    19021 catttcgaca aatgtggaat taggcggaac gacctggtta gaacctgttt ccaacgagca
    19081 ttacaataat ttataacaaa aaacccgcta gccttcattc aaggttggcg ggttttactt
    19141 atttacttac ataagctaaa atatcttctg gtttttcgaa gacaagttct gctttttcaa
    19201 agccatctgt tgtcttcgcg ccccaaagtg ctaagccaaa atgagctccg gccgcatggg
    19261 cacatttcat atcgtacgaa gaatcaccaa cataaagcac ttcatgtggc tctcttccaa
    19321 gaatttctaa ccctttcagc agtggatctg ggtgaggttt atggttttcg gtatcacttg
    19381 cgcaaacaat cgcttgaaaa tgatcctgaa tattaaacgg atagaaacct ttttccattt
    19441 ctaacgcgtt tttagaagtg acaacaccgc tttctggaat ggcatgcagt actttatgaa
    19501 tgccttcgaa cacctctact tcttcaatga aagttgcttc tcgttcaatc catttatcca
    19561 atactttctc tggatccaga atgtttaatt gttccaccgc agctgctccg gtaattccaa
    19621 ggacaaatcg taattcgtcc agttcataac ttaatccttc ttcggctaaa accgcttgaa
    19681 gagaatgcaa aacagctctc tccgtgtcta gaattgttcc atctacgtca aaaattattg
    19741 ctttatacat ataatttcct ccttcaagat ttagcgaagt tgtgataatg gtgcgttgta
    19801 tatcttgctt ttttcttact ttccgctttt tggatttctg cgctgttggt gcctttattt
    19861 tgaagtaaat ctcgaaattc gcgcaaatta tcatgggaat ttccatttat ttcgaattca
    19921 atattatcgc agctaaatgt tagcatgatt tcctcttctt ctcgaactag cgcaatatgc
    19981 cctaattttg caactggaaa cgtttgtctt tttttcatac ccaaactaaa atcttggtca
    20041 aaaacaagat agtctctatc gatgtaaaac tctccgaatt gatactccat tccaagtgct
    20101 gaattaatct tgcatacccc atctaatttc atatcattcg cctccttcat tgccttatat
    20161 attagtttta aatgatgaaa tgggtttcat gtcaagcaat ttcataaaaa tattttaaat
    20221 aagttttttt tgctgttcaa aaatatttag aatcaagtca atcacaatta acagtggggc
    20281 gtgatgatgt ttaaatgaat cttcatcaaa ctcctcactg gaagcataaa taatcgtctc
    20341 cacatattgg gaaatctggg cattgggatt attcacaatc gcaatgacat tcgataaatt
    20401 atattttaaa tgttccgcga gtgaaagggt gttttcggtg ccaccgcttt cagaaataat
    20461 aataatcaaa tcatctcttt caacaatttg tggcaaaata tcgataataa atgaatcata
    20521 ggtgaaaact acattctttt tcgatgtaac aagacttttg gaaaaatatt ctcctaatgt
    20581 tttcgtcatg cctagacaag caatatagat tttaggtgca tacgcaattc ttgtcgcgac
    20641 ttgctcaatt tctttctttg gaagttgctc aattcctaaa cgaatttttt ctaaaaatgt
    20701 agatgaatag tcttttgaaa ggggttttgt ttctgtttta tccgagtgaa gtaaaaattt
    20761 cagctcagaa aaaccggaaa gctttaattt atgacacatt ctaataacgg ttgtggtact
    20821 gacattggtt gactccgcta gagatgtgag ggacattttt tcaatggtag aaatatggtt
    20881 gtcaatatag aagaaaactt gtttttcagc aggacttaaa aattcaattt gaggcgcaaa
    20941 caagcgataa agtgaagtag ctgacataat aaatacctcc atggctatcc gaattaattt
    21001 tagtatacat gaaataaaag cgaatgaaca acactgcgta caattgtacg attttcgtac
    21061 tttttcaaaa aaataatatg gtataactaa agtaacctag ggaaaagact gttaataaag
    21121 gagctgatag cattgaaatt aagcgatatt acatcggagc cactcatctt tttagataaa
    21181 gattggcgca ctaaagaaga agtatttgat ggattaattg atgctttaca caatcaagga
    21241 gttttgtcag ataaaaatga attcaaaaaa gctgtcttag aacgcgaaaa gatttctgaa
    21301 actggtttag agaaaggttt tgctattcca catggtaaat ctaaagctgt taaaaaagct
    21361 gcttttgcat ttgctcgtat caatcaacca attaattctt ggggcagcat tgatccaaca
    21421 aatgaagtaa aatatatctt tttattagct attccagaaa acgaagccgg atcaactcat
    21481 ttagaacttt tggcagcttt aagtaagcgt ttactcgatc ctgcttttat tgagagcatt
    21541 tctaccgctc cgacagtaaa cgaatttata accgtgctag attctgaaca acaagaagat
    21601 gaaaaagtag attatacacg aaaaatcgtt gctattacag catgtgcagc gggtatcgcc
    21661 catacgtata tggcagcgga agcccttgaa ctagctggta aagaacttgg tattgaagtt
    21721 atcgtcgaaa aacaaggtgc gaatggtatt gaagaccgca ttactcctga aatccttaaa
    21781 ggcgcagaag cagtcatttt cgcgacagat attaccgcaa aagataaaga acgtttcgcc
    21841 ggaatgccct ttatccaaag acgtgtcgct gagccacttc gtagtggtaa agaaatgatt
    21901 gaaactgtat taagcaaacc agatggctat gtcaaagctg atacagatgg ttcagaacaa
    21961 caatttgata ataataagag cagtgttttc tcgcaaattt atcgtgggat tttaactggt
    22021 atttcttata tgttacctgt tattgtcgca ggtggtttaa tgattggtat tggccaactt
    22081 ggcgcaactg cctttggtct tgaaaaagtt attggtaatc cagagtatgc aacaaactct
    22141 aaccagctta ttgtaatctt ccattatctc ggtttatacg gaaatatgat tatgaaattc
    22201 atgtatcctg ttttcggtgc cttccttgct tactcaattg ctgaccgtcc tggacttgct
    22261 cccgggttta tcggtggtgc tttcgcagca gggctacatt acaccttctg gggcatagat
    22321 ggcggtatac catctggatt cttcggtgtt ctaattttag gtatcattgc cggatttgtt
    22381 gctaaattct taaacgaaaa aattaaatta cacaaaaatt tacaagctat gaaaccaatg
    22441 ttcctgattc cagggattac cgttttagtc ttgttcttcg tcaattacta tgtggtcgac
    22501 ccggtattcg ggggcttaaa cgcatggtta caagaactaa ttattcaaaa tcaagatgca
    22561 agtgctgtac tactttcgac aattattgct tgtttgactg catttgactt aggtggacca
    22621 gtcaataaag cagctggagc tatcgcaatc ggactcgcag cagacggaat tttcccgcta
    22681 actgctcgtg ttttagcaat cgttatcccg ccaatcggac ttgggcttgc gactgtatta
    22741 gataaatatg ttgttaaacg tcgtgttttt gatgaaaact tacgtgttgc aggtacaacc
    22801 tctattttcc tagggtttat tgccatagga gagggcgcga taccgtttat gctacaaaat
    22861 ccacttatca ctattccaat taatatgatt ggtgcttctc ttggtgcggt tactgccgtt
    22921 ttacttggtg cagtacaatg gcttccactc ccagcaattt ggggttggcc gctcgttgaa
    22981 aatttctggg cctatgcgat tggtttaatc gtaggtatcg cctttatcac attcgcgaat
    23041 atcttcgtac gctacggcct aatcacacgt aaagaaaata aaatcaaata aaaaaatagg
    23101 ctgacaggta ctctcgttag tacctgtcac ttaatttgag aggtttttaa aatgaaaaaa
    23161 aataaaattg tacatgttgt cgcacattcc cactgggatc acgaatggta tttcaccatg
    23221 gaagattcca atatcttatt aattgagaat ttagactatc ttttaaatgt tttagaaaca
    23281 aaagattcct ttgcaagtta ttcctttgat ggtcaaatgt ctgtcattga gcgttactta
    23341 gatattcgtc cagaaaataa agcgcgcgtt gaaaaactta tccaagatcg tcgtctgttc
    23401 gtcggtccgt ggtatacaca aaccgatagc ttgttagtta aaacagaagc tgtgattcgc
    23461 aacttacttt atggttataa aatgggcgaa gaattcggcc atagcatgag tatcggttat
    23521 tccccagata tttttgggca acatgcttat ctgccagcta tttataaatc atttaatatg
    23581 gagcatagca ttttccagcg tggtgtttat aacgatcaag tgcaagatga ccttaacttc
    23641 cactggacat ctccagacaa caagtccatc ccaaccaaca atattttctt cggttatgga
    23701 cccggcaaat ttttaagcag tgaaaaaagc tatgtagaaa ctcgtcttct gccaatttta
    23761 gatcgacttg ctgaaatgaa cacacataca gatgtccttc ttttaccagc aggcggcgac
    23821 caagtacttg tgcgcgaaaa cttcccagaa attgtcgcgg aattgaacga gatggactta
    23881 ggttatacct tcattctgtc cgattacgaa gcatttatga atgatgcttg gacttctact
    23941 ttcccgaacg aaatcactgg tgaactgctt gcttgccaaa aatcacgaat ccaccataca
    24001 tgtcgttcag aacgctacga tattaaacgt cttaattact tagtagaaaa tagattagtc
    24061 aacattctag aaccacttgc aacaatggcc aataaattcg gaatcaaata tcctaaacct
    24121 tggttagata ttatttggaa aaaattattt gatagccacg ctcataacgg tattggtgct
    24181 tcaaattcag atgacgcaaa ccatgacatc gtagttcggc taactagcgc acttcggatg
    24241 acagatggct taattaacct tttgaaaaaa caaattacga aggccgttag tcaggaaatg
    24301 ggcgacgaaa atattgcgct attattcaat actaacccag tggcagaaga aagaactgca
    24361 aaactaacat tattcactcc tgaaaaatca ttccaactgt tctcaggtga tgcggaagtg
    24421 actttcagcg ttgtacatca agaaaaatta gacggtggac ggaaagtaat cgtaactgca
    24481 aaaggcgaaa aagaagttgc tgttcctgat tattatcgta cagaaatcta cttgaaaagc
    24541 ggcctaatcc ctgcacttgg ttacaaaaca ttgcaagtga aagccgttac tacagaaatg
    24601 gaccaattaa tcagcatttc caaacaaaca attgaaaatg aaaaaatcat tgttcaattc
    24661 gaaaacggga aaatcaatct tttaaataaa gaacaacaaa gcattataaa tgaccttatt
    24721 cgcttcgaaa atgtggctga cgctggggat tcttttgact tctcaccact tgaaggcgac
    24781 caagccatct atatcgaaac aagcgaatta ctaaccgttg aaaaaaatca tctatatagc
    24841 aaaatgatgt taaaacatac tgctttagtt ccgaaagatt tagaagcccg cgcacaaaaa
    24901 acaagtacag aaacatttga aattttaaca gaaatcgaac tttttgacgg tgaagaattc
    24961 gtccgtgttc gccatactat tgacaataaa gtaaaagacc accgcattag agcattgatt
    25021 aaaacaaatg tagcagaacc taaatattct tacgcagacc aaggttatag cctcatgaaa
    25081 cgcagcgtca caaaccctta ccttgcaaat tggcgcgagg acaaattcgt ggaagcacct
    25141 gtgccgattt tcccagtgga aaatatcgtc gctgtttctg aagaagacgc aacacttgcc
    25201 ttgttagttg gcggtatcaa agaatatgaa atcttaccga aaactgctga aatcgcatta
    25261 actcttttca gaagtaatgg tttgcttgga aaagatgatc tcatgtggcg tccaggtcgt
    25321 gcttccggta ttaataacaa agtcgttcct acaccagacg gtcaaatgct cgaagaaatg
    25381 atttttgaat atgctgtgta cgtacaacct gagaaactaa atgaacaaac gctctacgcg
    25441 caatctaaca tttttgaagg tcatacagaa acctatcact tacaaaacct aaatacattt
    25501 gaagagcgcc tagaacgttt tgaagtagat tatccaatcg accgtttacc agctcaaaat
    25561 tctatctttg aattagataa cccgaacgta ttcatgagca cttgcaaaaa atcgtgggat
    25621 ggcactggca caattatccg cctatttaac ccatcagaca aagaagaaac cgttcgctgg
    25681 acaaccaacg cttccagttt tgaagtttca ctagcggagg aaaaaatcgc agaactaaaa
    25741 gaaaacacta tctgtattcc taaaaaagga tttgcaacta ttttgttgga aggagaataa
    25801 tatgcaaacc gaactggtta atcaaataga agtaaaacta agaaaaattt atcaagctgc
    25861 ataccaaccc gcatacttgg aaaaaatgct cgcatgcgcc gaaaactatt ctaataatgc
    25921 gcgtggttcg attgatacta tttccgaaaa aaacgtctat cttattgcct atggcgacag
    25981 cattttcgaa aaaaacaagc atccgttaca aacattgaat gaattcctac aagaatatgc
    26041 gcaagatgtt attacagatg tccacttgct gccgattttc cctagtacgt cagatgatgg
    26101 cttctctgtc acagactaca agcaaattga cgaacagctt ggcgactggg atgacgttca
    26161 aaaaatgtct gagaacttcc gagtgatgct tgatttcgta gccaatcata tgtcgaaatc
    26221 aagtgattgg tttaagcgat tctccgataa cgaagcgccg tacaatcaat ttttcatcga
    26281 gaaaaacagc caatttgatt ataaaaacgt cacacgtccg cggacttctc cgctgttcca
    26341 caaatacgaa aacggtaaag aactttggac tacttttagc gaagatcagt tagacttaaa
    26401 tgtccgtaat atcgattgcc ttgtagcctt aacagatgta ctgcttttct atgcatccaa
    26461 acaagcgaca agcattcgac ttgatgccat tggattttta tggaaaactt ctggcactac
    26521 ttgtatgcac ctgccagaaa cccatgagat catcacgctt tggcgtctgc tgattgatga
    26581 actatatcca aatctgcaaa ttatcacaga aacaaacgtc cctcatgaag aaaacattag
    26641 ttattttggc gatggtgaaa atgaagcaaa tatggtttat cagttcccgc ttccgccact
    26701 tgtgctccat accttcactt gccatgatac aacgaaactt tcgaagtggg cgaaatccat
    26761 ttcacaagtt tctagcacag cgacttattt taacttctta gcaagtcatg acggaattgg
    26821 tatgcgccct gcgaccggaa ttctttccga cgaagaaatc aattctctcg tccaaaaagc
    26881 ggtccaaaac ggtggccaag tttcctataa agacaacgca gatggcacgc agtcggtata
    26941 cgaacttaat attaactacg gtgaagccct gcaaaacctg ggcgaagaca caaccgaaga
    27001 actcgtaacg aaaaaaatta tcgctgccca tagtattttg ctaacacttc aaggcatccc
    27061 agcgatttac tatcattccc ttctaggttc taaaaacgac cttgttggtt acgaagaatc
    27121 cggtattaat cgccgcatca atcgtgaaaa actggaaaaa aatcaattgg ttcatgaact
    27181 tgaaacagac acttatcgac aaaccatttt cacatcactg aaaaaattgg tgccaatcag
    27241 acgaaaccac accgcttttt caccatttgc aacccaagaa attttagatt taggaccaga
    27301 tgtttttgcg attaaacggg aatctgagga agaatgtatt tacggaatta tcaacgtcac
    27361 ttctcataat atccgcaaaa cgctcgcttt ctctggcacg aatttattaa ccaatcaacc
    27421 cgtaacgagt gaacttgaat taactgcata tgaggttgtt tggattaaga aggcggtcca
    27481 atgaaaatcg tcatcgcacc tgattcattc aaagagagcg ccactgctgt tgaagtagca
    27541 aatgctataa aaaaaggctg gactaaagca cgtccagccg atcaaattag ccttgcccct
    27601 gtttctgacg ggggtgaggg ttttcttact gttttaagtg agtcttccga ggtggaatta
    27661 tttcaagcag aagtaaccaa cctaaatggt cacaaaataa cggcctccta cggtattctc
    27721 gctagccaag aaactgcgat tatcgagtcc gccaacacga ttggattaga tttaatccca
    27781 gccgtagacc gtaatccagc ttacgcgagc tctaaaggcg tcggtgaact tattttggcg
    27841 gcactgaatc acaacgtcaa aaaaatcatt atcggccttg gtggaagtgg cacaaacgat
    27901 ggcggcgctg ggctaatcca agctttgggc gttgcactac ttgataaaaa caaacagcct
    27961 attccgcccg gtggcattca tttgcaagaa ctagcctaca ttgatgccag caaccttaat
    28021 ccaaagctga aaaacattca attccaaata gcctgcgacg tcacgaatcc acttcttgga
    28081 gaaaacggcg ctaccttcgt tttcggtgct caaaaaggcg caactcccga aatgctcgtt
    28141 caactagagc gcgccatgca gaactacgga gcaaaactcg atcaattttc atctcaaaaa
    28201 atcactacaa aaaaaggagc cggagccgct ggtggtatcg ctgccggact aatgactttc
    28261 ctaaatacag acgtgttaag cggttcagct ctagttatgg aactttctaa tatgaaggat
    28321 aaaatgaaag atgcggatat cgttattgtt ggtgaaggac gaatggacaa gcaatcgatg
    28381 atggggaaaa tccctgttca aattgctcaa gaagctaaaa aacaaggttg tttcgtccta
    28441 gcaatcgtcg gtagccttgc actcgaaaac aatatcgccc aacaacacgg tatcgatgcg
    28501 tttttcccaa acatcccaga aataacagat ttacccactc ttttcgaaaa tacaacaaag
    28561 aacctcgaac gcacggcgga aaacattgcc aaactaactt taattggcaa ataatttttt
    28621 aaactgtttt ccttctaatc aattcatgct ccactttaat tctttgcaat ttaccttgtt
    28681 caaaaatagt aaaagcattt tctcccaatt tttttaggtt atgatcaagc gttgtgattt
    28741 ctaaaacctt accaattggg agattttctt gccctaaaat agcgacatct tccggaacac
    28801 gcaagccgag ttttttcacg tgatacataa cccctgccgc aacctcgtca ccattcgcat
    28861 aaatcgcatc aggccagtct ttcccctctg caaaaaaatg ctccccagcc ttcaaaccat
    28921 cttcaagcgt ataacattca cttagaaacc gattatcacc cactgaacca aaaacttgct
    28981 cataagcatt gatttttcca tatgtactcg tactttcacg cgatgctctc cccgctgtaa
    29041 aagccacttt tttataacct tcatcttcca aaaactgaaa tccagcccgg tatgctttca
    29101 cgcggtcaat ataagagcac gatacctctt ttgattccac atactcgcac gcaataatcg
    29161 gtccatacgc taggtacggc aaaatcacgt cccaattatt ggcacgcgaa gtaataatca
    29221 ggccatccac ctgtttcgtt ttaagacgca tcaagtactt ttcttcttct ttcggatcat
    29281 atcctgttgg aaaaagcgtc accgaataac ggtttttaaa agctacttcc aaaataccat
    29341 ttacaatttt gtcaaaccac gggtgatcat tataaggtat aatcacgcca accgtatttg
    29401 ttttcccacg cgctaaatcc atggcgctac ggttaggtga ataatctaat tcatcaataa
    29461 cagcttgcac acgggctctt ttctcctcca caacatacgg atggttattg agcacacgtg
    29521 acactgtcgt cactgaaact ctcgctaatt tggctatttc tttaatattt ggcattttaa
    29581 aaacctcatt cctaagaaaa aagtgcggac agatttctca taccgcactc ctatttttat
    29641 cattaagcca tctgttcaag ttcgcttgtt tggatgtctt tttcgacacg aaccgaaacc
    29701 agtctggcat cattcatttc ttctactgta aatcgaagtg taccgtattc tactactact
    29761 ttatcatctt cttctggaat tgtcccagtt aaagtaagca caaatccagc cacagtatct
    29821 acgccacgtg atggaagttc cacgtgaaac atttcattga aatcatcaag cggcatgcga
    29881 ccttctacga taaatgtcgt ctcatcaatt ttcttcactt catccgaaaa cacatcattt
    29941 tcatcgtcaa tctcgccaac aatttcttct aataaatctt ctacagtgac aataccagca
    30001 acaccaccgt attcatccat taaaatagcc atttgatttc tagttctttg catattttta
    30061 agtagatcgt caataaacat cgtctcttgc gcaaaatacg cgtctttaac gagcgccttc
    30121 acatcaatgt tttcaaaacc tgactttctc gcttccgcaa aaaaatcttt catatgcaga
    30181 atacctagca ccgagtcctg atcgcctgta aaaacgggaa cccttgaaaa attctcactt
    30241 aataatgcgt cacaaagttc ttccgactct gtttcggcat caatcataaa cgcatctgtt
    30301 cgtggcacca tcacttcacg cgcatattta ttatccattt caaatacacc acgaagcatt
    30361 tgtaattctt ctacctcaat tacaccgtca cgtcgaccgg tttcaatcag tagctgcatt
    30421 tcctctcgcg tcattttttc attatccgta tttttctcca ttctcgttaa tttcacaaga
    30481 atatcggttg aaaaagacag gaatttcacg aacggacgaa gcacaacacc aactgccatg
    30541 attggtcgta cagaaacacg ggcaattttt tctgattttt gaagtgctaa acgttttgga
    30601 taaagttcac cgaaaactaa cgtgatatat gataacacaa tagttacgac gataatggat
    30661 aactctttcg caaaactact tcctccaaaa acagattcaa gtctagtcgc aatactagtg
    30721 gcagctgacg cactggagaa aaatcccgca agcgtaatac caacttgaat agtagctaga
    30781 aatttacttg gatcatctac gagtttagct agcataaccg cttttttatc accggtttct
    30841 gcctggcttt ttacacgatt tttgttcaat gatacaaggg ccatctctgc tgaggcaaag
    30901 aatgcgttga gcatcgtcaa caccacaata agaattaact gcaagataat ctgctgactc
    30961 tcggggtcag ggttcatatg gaactctcca ctccttattt tcatcaagaa aacgaccatg
    31021 cattttctct aaatattccg gacaatttgc cggttaagaa aattttatca cgccacccct
    31081 attactgcaa ggtttcaaat ctccgcgaaa actttcacag cgtcactttc catcatttca
    31141 aatggataag gaagcgaaat ctgttcttta tttacagcaa aaatccgcgc ttttttattt
    31201 cgataatccg ttaaattaca aaacggactc acgcgaaaag atgtccctac tatcactatc
    31261 aaatccgctt gtcttatagc tgcaagagat tgatctatcg cactctctgg aatcgcttct
    31321 tcataaagca ccacatccgg acgaatgacg ccaccacaac ccgaatggat atccgatttc
    31381 aagtactcct cagcggtaac agacattccg catttttggc aataacaatg atataaacta
    31441 ccgtgaaaat ttacgacttt ttttgaacct gctttttcat gcaaaccatc aatattttgc
    31501 gtaataatcg tgacatcttt ttccgcttcg atttcagcca tttttgtatg aatcgcattt
    31561 ggctctgcat ccggatagta catgttttct gtaacaaatt gataaaactt ctccggttca
    31621 cgcacaagac acgtatggct caacatatat tccgggctac tcatcccagc atataagccg
    31681 tttttcgagc gataatccgg aattccagaa gggacagaaa cacccgcccc agttagaaaa
    31741 acgatgtgtt cagctttttt gagtgcttca ttcaacttat tcattcttta aattcctttc
    31801 atttatatgt tgtttatctt tccagttcca ccattttcgc aaatcaacat cttgctccgc
    31861 ttcatccgtt tccgcaacat agactgcgca gcgatacgta taaagtacac acggatccat
    31921 tctctcgcct cgcttatcgc aagtatcctc atataattca agcggattct tcccttttaa
    31981 atcagcaacc tcttcaaccc caatttcatt taacattaac accatttttt tacctattcc
    32041 tggtaatttt attagttcag ttggcatgat ttcccttctc tccgtgcatt tttcggttga
    32101 aataaaaact gattagtaca ttgataaaaa taaagcctgc aactacgagg aagacatctc
    32161 cgtaaccaaa atgggcggca acacttgacc caacaagcgg tccgataaca ttcccaatgt
    32221 attgaaacga ttgattataa ccaaaaatcc gacctgaaac ctcgcgcggt gtattttttg
    32281 taagcaatga ttgaaccgct ggaagcaagg cgccgtctgt aagccctaat aagaaacgta
    32341 aaatccctag ttgtaatggg ttttgtgcga aagccattgg aatttggagt aacattgaac
    32401 ctatgagcgc acctaacaat attcgctccg aaccaattcg gtctccccat ctcccaagtc
    32461 tcggtgccgc aataagcgcc gcaacccctg gaacagatgc aatcatccca ctaataaaag
    32521 cgatgttttg cgcatttcct gccaaatcac gcacgtataa tgtcaaaatc gggttcactg
    32581 agttggacgc aatttgaatc atcattgtcg taataaataa ggaaataatc aagcccgggt
    32641 ttttaagcga taagaaaact tctttccctg accgcatttc ctttttttct actggtgtaa
    32701 atttctcttt tacgaagaac agtgtgagga aaaagctacc taaaagaagt gctcctgtga
    32761 tgtaaaacac tggtctgacg ccaaatgtat ccgacaacgc tccgccaatt aacgggccaa
    32821 ttagcacacc cgaaaccgcc gccgtagata atgccccaag agcccagccg ctacgatgac
    32881 gaggaacttg tgtagcaata agggcatttg ctgttgaaat atatcctgaa aaaatcccca
    32941 ttaataagcg caaaccaaca aattggtata cattgcttac gagtcccatc agaatcatcg
    33001 ctatcgccat acctagcgca gctcgcaaaa gcataattct ccgccctttt tggtcagcta
    33061 gtttacccca aattggtgac ataatagctg atactaaaaa ggtcgaactg agtgcaatcc
    33121 ctgaccacat gcttacttga tccggattat gcactcctaa ttcttcaata tacaatggta
    33181 aaaatggcat gattaaattt aatccggttc cggttagaaa gcaccccacc cagacaacat
    33241 acaaattctt cttccaattt tccataaacc cacctagatt cttctatcgt tatccttaat
    33301 tattccacaa aaaaagcgaa agtaaaacta aacccttcgc ttttttgcta tatttgcgta
    33361 aaatgtttca cgtggaacat tttatgcttc taaatttcct cgtggtaccc aaccagcttc
    33421 attctcttct gttacgcacc aaacccaacc attaagttca cgattacttt ctaatttatc
    33481 gcctggttta acatttaatt cgcgcgcaga gtagtcttct gatacggttc cactctttcc
    33541 atcattactc aattgaataa tttgtttagg aacccagcct tcttttccgg ttgacttcac
    33601 tttacaaaaa atccagcctg gatattctgt atcttcttca aacacccaaa tagactcatt
    33661 tttattcaca aaaaggggat ttggatattg actaacatgt tcttttttca cgataaatgt
    33721 ttgattcata gttagaaacc tacctcttta ttttttcgcc gcttcccaat ctgcaagaaa
    33781 tttgtcaatc ccactgtcgg tcaacggatg ttttagcatt tgttcgaaca ctttaaatgg
    33841 caccgtagca atgtcagctc cggctttggc acattcaata acgtggattg ggtgtcgcac
    33901 acttgctgaa ataatttctg ttggaatccc gtgaatctcg aaaatatccg caatgtcacg
    33961 aattagaact aagccatcgt cgcctatatc atctaatcga cctaaaaacg gtgatacgta
    34021 tgttgcgcca gctcgtgctg caagcaaggc ctgtgtggca gaaaacacaa gtgttacatt
    34081 ggttttaatg ccttcttctg tcaacacttt tacagctgcc aaaccttcgc ctgtcatcgg
    34141 tatctttaca accatattcg gatggatttt tgcaataact cgaccttccg caatcatctc
    34201 atctgcttct aaacttacta cttcgccact aatcggtccg tcaacaatgg atgtgatttc
    34261 ttgaatgacc tcattaaaat cgcgaccttc ttttgcaaca agtgatggat ttgtcgtgac
    34321 tccggcaatg aatcccattc tgttagcctt tttaatctct tctacgttcg ctgtatcgat
    34381 aaaaaatctc attaaaacat cctccttttc tatcaagcgc tttcaattac agagccatta
    34441 taacgcaaaa atttaaataa tgcttttgaa gtgcttttcc acaaaaaaaa agaatgccac
    34501 tgagcattcc aaaaagtttc acgtgaaaca aaattataat cgagttttgt ccatcactag
    34561 gagaggcttt ggtctatttc taattatatc ctctttaatt aaatgcatga ctgtatgagc
    34621 cacgtattct cgtgatgtat ttgtgtatct tgcaagtact tcttgcgtga tttctcttgg
    34681 taacaatatc ccgttatcag aaaacgttcc taaagtttga gcgcatttga gaatggcttt
    34741 gcggattcgt tcttcctttt tcaagaagct tagttttgca aatgtatggg cttcacgtaa
    34801 ttcttctgcc atcactttaa tcataaaaaa gttgttctca tcttttttgt cgaaaataga
    34861 gaacaagaaa ttgctatcta cttccataac ttctccgtga cctaagctct gcatcgaaac
    34921 atgcggactc cattcatcgt aaaaaagatg atatagtcca aaactatctc ctttttgcaa
    34981 gaaacgaaca atgctttctt tatagctttc ttcttccatt tctgcatctt cctctacaat
    35041 catcccgtat atgccgctta gaacaaaata tacttttgtt ccagccggac ttaaactttc
    35101 tagaacctca cctttcttgg tgctgataac cgagcagtag tctttgtaac ttggatgttc
    35161 aaagcacaac tccattaatt tgctaaccgt tagattggat tcaagctctt ttaagaatag
    35221 catattct
//
LOCUS       DASDXX010000005        34964 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.005, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000005 DASDXX010000000
VERSION     DASDXX010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 34964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34964
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.005"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            32..898
                     /locus_tag="U0280_000222"
     CDS             32..898
                     /locus_tag="U0280_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2270186.1"
                     /translation="MLKTLRTKNICFIMLGTAIYAFGLVNFNIANNLGEGGLAGVTLF
                     LLHFFQIDPAYSNLILNIPLFILGWRVLGNRSLIYTGIGTVSLSLFLWIFQRIPYTLD
                     LHSDLLLVALFAGGFSGIGLGLVFRYGGTTGGSDIIAKLLNHTKGISMGRTLFAIDAI
                     VLVASLSYLDVRQVMYTLVAVFIGSRVIDFVQEGAYAARGALIISKDNDAIASHVMLA
                     MNRGVTVLEGRGGFSKKDQDVLYIVVAKNEIIQLKNIVQAIDPHAFVSVSVVHDVMGE
                     GFTLDENKNPIY"
     gene            complement(888..1994)
                     /locus_tag="U0280_000223"
     CDS             complement(888..1994)
                     /locus_tag="U0280_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEM2270187.1"
                     /translation="MQKIVIIGGGIVGASAAYLLSKENVQVTLIDSDEPGQATRAAAG
                     IICPWLSKRRNKYWYELAKNSAAFYKELAGTLEGDTGRNSGYKQVGVLALRKTEEKVT
                     ELFNLANERRLDAEVMGEIVKLSEEETKQKFPLVKPGFGSVYVSGAARVNGSLFCERL
                     LYAAKENGVKIKSGRAHFSTDGKVRVDGEDEHYDKLIIAAGAWLKELLDEASFHTEVL
                     AQKGQLLELDFSEFQTDEWPVILPPSAKSIVPFDNGKIIVGATHEKTAGFDTKPTVEG
                     KAEILTEVSQFMEGDLASKVAHVAVGTRPYTPDFAPLIGQLPGFESVFLANGLGASGL
                     TTGPYVGKLLADLALGNTVDLALENYEPSKYISR"
     gene            2314..3450
                     /locus_tag="U0280_000224"
     CDS             2314..3450
                     /locus_tag="U0280_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2270188.1"
                     /translation="MPNILDSLWNSMALFLSALFFHGMALRSIREKKPAWFQIKFSNE
                     IINYALGIYYGLLGVYFIIRGLPGTDSGIYTDMLLNILIVLHLFSSAGPATIALLLIV
                     AGKLFLGDALFANLIYAFLIIGFHFVCMEVAKLRLSSVQKVVLVKLSAIPLMLFYLHQ
                     KIHLLYTINDLPVWILYFLVSFFITFIIVSAAYYIDTSNKLIYDLQQSTILDPLTGLT
                     NFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGNGVLSTFSQMLLK
                     ISFPPNTLISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIVASGSVITISA
                     GIANYDGRNYPNPNELLNAADQALYNAKRNGRNQVHIRETEPVV"
     gene            3476..4603
                     /locus_tag="U0280_000225"
     CDS             3476..4603
                     /locus_tag="U0280_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2270189.1"
                     /translation="MFELVNSYIDSLALFLAILFIQGMSFRKIRQYRPNWFQNGGRRL
                     FLSILLGVYYGLAGIYFIYEGAYENNPVIYTNMRILILMVTSVFGGRVPLIFAYLVML
                     FGRISFDIASPVTSRYVILMTLIFAACLLVTFWKKQRFSRFVALIILNFPAILYYFVN
                     NFDEGRILQGFEIIEYFLLFFVTALLVFYACNYIDKSNLVIQNLTETAMTDSLTNLPN
                     MRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNR
                     TFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERAKFPYNPASGKVTVSIG
                     VASASSNFSTTESLFEAADQALYQAKQNGRNQIAVHQGELE"
     gene            4600..5604
                     /locus_tag="U0280_000226"
     CDS             4600..5604
                     /locus_tag="U0280_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside transferase"
                     /protein_id="HEM2270190.1"
                     /translation="MKRFILIFILIILIGAGFFFFLRPEPKKTVSAPKETTPTSTSVQ
                     TYVKENYTAKNGLIVDYKNAQEPHYLAESIGLYMEYLVEVNDSKTFQEQVSHLEKNFI
                     TEDNFIKWEATDATTTNAIVDDFRITEALYQASEKFIFPSYKKMADKILANTKKYSAE
                     QGVPVDFYDFVHKKKADTLHLSYLNIQAMQQINYRDKAYLPIQTVNADPFFTEVFQNE
                     QFQYADPSEVNMIDQMLIAMAYFDENGDVEPNFDNFLQTELASKGKVYARYQRETKNP
                     SSENESTAVYAFLTQYFNKTNQAKNGKITKELLEKMDTSNPETTHFFDYINKEITLKK
                     "
     gene            5623..6306
                     /locus_tag="U0280_000227"
     CDS             5623..6306
                     /locus_tag="U0280_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEM2270191.1"
                     /translation="MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHW
                     NAISDFIEEAEQDGLQKAFELLTLHNAVKRFNKSGDTPLFVNISYDTFLENQEELHDT
                     LLDNGKIVFEFLETSKLPQERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAH
                     HSDFVKTDRLLLRDLFESDGKKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGI
                     PYAQGYYFH"
     gene            6417..8060
                     /locus_tag="U0280_000228"
     CDS             6417..8060
                     /locus_tag="U0280_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HEM2270192.1"
                     /translation="MTVKPGFDYMNNPLLNKGTAFSKEERASYQLDGLLPPIIETIEQ
                     QAVRIETQIENLETPLHKHQLLTNLYNENRTLYYYVVTKNVTDYLPIIYTPTIGDAVI
                     QYHKEYTAPDEALFIDAFAPEKLSASIKNYAKNNPNIDMIVITDGEGVLGIGDWGVNG
                     VKIAVGKLAVYTVAAGLAPDRVLPVVIDAGTNNETLLNDPLYLGNKRPRLSESEYDAF
                     IASFVNVMKEVFPKAILHWEDFGRANASRILHNYRDKICTFNDDIQGTGAMVVAAVLA
                     TIQVSKIPLSEQKIIIFGAGTAGIGIADQLSAQWMRETGLPFESAKKHFYLVDRNGLV
                     LDNMTDLTTGQKKYAHPSTEWSNVPTDTLENLMEAVHPTMLIGCSGVTGAFKESIVKK
                     MTQYTERPAILPLSNPTKLAEATASDLIQWTDGKALIVTGSPSKPVEYQHTTYEIGQA
                     NNALLYPGLGLGALVTRAKYITDGMLAAASMAVAEQISPNKAGAALLPHVRTLRETSR
                     AVAIAVANQAIKENIHQVELTNVTEAIEREMWQPIYKGV"
     gene            8063..9070
                     /locus_tag="U0280_000229"
     CDS             8063..9070
                     /locus_tag="U0280_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HEM2270193.1"
                     /translation="MFYKTKQSLDQLVQNGSTPGISYQIKTNYLEENNIMGLKSVFPE
                     AEILPRTTENIYDIASLTKVIATTTRILQLIEQQRFQLNDPIQMYLPDFRYNNVTILH
                     LLTHSSGLAQNIPNFSMNNREDVIRYVYATPQINIPGTVVTYADANFLLLGYLISKMD
                     GNYEKAIQNNILEPLSMTNTSFHPANKKQVIPTELDQTRGLIQGDVHDFKAWTAKSGT
                     GHAGLFSTLSDLSKFRDALMLQHGAPILSEKTWQLMQINHTPGLNRSRGLGWDLRGDS
                     VLYHTGFTGTFMVLDLKHQASLIVLSNRVHPSRANPNFVDKRDSIVDTFLEEVANTTE
                     V"
     gene            9303..11582
                     /gene="pflB"
                     /locus_tag="U0280_000230"
     CDS             9303..11582
                     /gene="pflB"
                     /locus_tag="U0280_000230"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM2270194.1"
                     /translation="MTKAWDGFKGTAWQENISVGQFVQDNYTPYDGDESFLEKSTPRT
                     TKLNEKINKLVEEMDAKGGVLDMDNAIVSNVASHKAGYVDQENEVIVGLQTDKPFKLA
                     FMPNGGLRTAEQCLTDNGYSIDQELHDFYVKNRSTANDGIFRAYTDDIKRARHSHIVS
                     GLPDAYSRGRIIGLYQKPALYGVDRLIAEKQQDLKKIAISSDENIRLREEIWLQIKAL
                     KDLIVLGNEYGLELGRPAENATEAVQWTYMGYLASIKQANGAASSFGRIPIFLDIYIQ
                     RDLEKGIITEFDAQELIEQLTLKLRMVRFARTDGYNELYASNPTFVTTSMAGMGADGR
                     HRVTKTDYRFLHCLDNLGNSAEPNLTVLWDARLPESFKEYCMKMSVKHSSIQYENDKL
                     MQEEGYGDMQCISCCVSPLNPEADKDKGETHNLQYFGARVNVLKCLLGAINGGKDDLH
                     KNQVFDVVEPITTEYLEYEEVLEKFDKSMDWLTDTYVDAMNIIHFMTDKYNYESMQMA
                     FLPSKVTANMGFGICGFANVVDSLSAIKHAKVKTIRDEDGFVYDYEVEGDFPRYGEND
                     DRADDIAVMVLKMFKDKLDSHKLYKDSEATVSVLTITSNVAYSKQCGNSPVHKGPVFD
                     ENGKIVKEPEFFSPGANPSNKAKGGFLDNLASLSKLPFHYANDGISLTIQGAPKMFGK
                     TTEEQHHNLVGILDGYFTKGGQHINLNVLNHDEVIEKIKAGIPVILRISGYCLNTKDL
                     NEEQKMELCQRMFHEKLIG"
     gene            complement(11630..12895)
                     /locus_tag="U0280_000231"
     CDS             complement(11630..12895)
                     /locus_tag="U0280_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2270195.1"
                     /translation="MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMS
                     GGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRM
                     FPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVI
                     VAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDV
                     SLSVLNAKGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFP
                     NVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKADLDETADYKQVSPKK
                     IEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDI
                     NGYTGGYNITCALVTGHTAGAYAAEVSNA"
     gene            complement(13005..13688)
                     /locus_tag="U0280_000232"
     CDS             complement(13005..13688)
                     /locus_tag="U0280_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallopeptidase"
                     /protein_id="HEM2270196.1"
                     /translation="MSFSQYIIYFIIVAAIPLWAQYRVKTTYAHYSKVGVANGLTGAE
                     VARHILDTNGLTNVPVHETKGILSDHYDPRKKAVFLSEANFRGRSIAGAAVAAHEVGH
                     AIQDQQDYAFMRFRSALVPVTMFSSNISWVFLIIGMLANVASFMLLGIILMAVGVLFQ
                     LITLPVEFDASKRALVQLESGGLVASSELPQAKKVLSAAAMTYVAAMAVAVLELLRLL
                     LIFTNMNRN"
     gene            complement(13775..14371)
                     /locus_tag="U0280_000233"
     CDS             complement(13775..14371)
                     /locus_tag="U0280_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1405 domain-containing protein"
                     /protein_id="HEM2270197.1"
                     /translation="MLYSLLANRAFLRLLFFGNLLGAIYGYIWYLPQLQMTEPRFWLF
                     VPDSPTAILFFTLALVAFLGKKHWPLMEALGFVCLVKYGLWAVGMNIFYMIDQGMLVW
                     GSVALILTHGFMAVEGILYAPFYRFRIGHFMIAAVWVFHNDVIDYVFGQMPIYMGLEK
                     YLPEIGYATFWLTVFVLWFVYDKTIKNKHLTLEFPHDE"
     gene            complement(14459..15004)
                     /locus_tag="U0280_000234"
     CDS             complement(14459..15004)
                     /locus_tag="U0280_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpiB family protein"
                     /protein_id="HEM2270198.1"
                     /translation="MKASISIDEKKDFIRWFLNKHQMKTREAMWVLNYIAGHDQIVKY
                     VHFVDNLEGCARGLSLSAHGVESEPFLFFKGNIMTTDPEKAFHDIRLNWDEELYVELH
                     FEEAMSSPEYALVREDNPFTAVKLADEEKEMADALIYQSVHQFSREKVLQQIDEALDT
                     RDEAAFHKLVRILQQMDTEKE"
     gene            complement(15040..16293)
                     /locus_tag="U0280_000235"
     CDS             complement(15040..16293)
                     /locus_tag="U0280_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2270199.1"
                     /translation="MELANKMLHALEHEDMALAKKYFDEVVQAGTDEEQYYLAEELFT
                     LGFLDETEDLYELLLAKYKDEGELLVRAAEVALEKDDIDSAQDYLEKVNKEDEAYIES
                     LLVLADLYQMQGLFEVSEQKLLEAKQMAPNEPIIDFALGEYYLSQARFASAVQSYQTA
                     VEAGLTIISNGAVSVYERIAEAFAASGAFEEALSYYERALEDKESVDTLFGMGLTAYQ
                     AKDYTKAIHALEHLREHDPSYTTLYSYLAKSYEENGEPEKAIAVLRDGLTQDEFNKEM
                     FLEAGKLAVTLRLPEEAEEFYRQAIVLDEEYSEAIMQLNKLLLAKEDYEGVIELVEGL
                     GEEVISEPQIFWDVSVAYQETEQYNKAKANYELAYSHFTNNPTFLKEYGLFLREEGEY
                     AKSQEVLRNYLELEPEDTEILSLFD"
     gene            complement(16425..17711)
                     /gene="aroA"
                     /locus_tag="U0280_000236"
     CDS             complement(16425..17711)
                     /gene="aroA"
                     /locus_tag="U0280_000236"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEM2270200.1"
                     /translation="MKLITNKQGLVGAITVPGDKSMSHRSIMFGAIAEGKTVIRHFLR
                     ADDCLGTIKAFKALGVKIEETEEEIIVHGTGFDGLKQADGPLDIGNSGTTIRLMMGIL
                     AGRDFDTVILGDESIAKRPMNRVMLPLQQMGAKMHGKDGSEFAPITINGKQSLKRMEY
                     HMPVASAQVKSAIIFAALQAEGETIIHEKEKTRDHTEHMIRQFGGEIEMDGLTIRVKG
                     GQTFTGQEMTVPGDVSSAAFFIVAGLITPGSEIELTHVGLNPTRTGIFDVVEQMGGSL
                     VVKDSSRSTGKLAGTVVVKTSDLKGTEIGGDIIPRLIDEIPVIALLATQAEGTTIIKD
                     AAELKVKETNRIDAVATELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDHRIGMML
                     QIAALLVEEGDVELERPEAVSVSYPTFFEDIRSLLK"
     gene            complement(17725..18828)
                     /locus_tag="U0280_000237"
     CDS             complement(17725..18828)
                     /locus_tag="U0280_000237"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEM2270201.1"
                     /translation="MKGTVVIVGLGLIGGSIALAIKAKHPEAHIIGIDVSYHSLEVGK
                     SLGVIDEIGESILIDGPKADLLVFCCPVKETEQLLTRLPGLRLKENVIVTDTGSTKGT
                     IMEASTALRESGITFIGGHPMAGSHKSGVRAAKELLFENAYYLLTPTKDVAEDKVAEL
                     RTWLSGTNAKFLVLSPNEHDEITGMLSHLPHIVAAALVNQTQSFTEEHPAAFRLAAGG
                     FRDITRVASSDPRMWTDISISNQKTLTKQLTIWRDSMNEALEMLESEDASSIYAFFDG
                     AKEFRDSLPVHQGGAIPSFYDLFVDVPDYPGVISEVTRYLGEEEISLTNIKILETRED
                     IFGVLQITFQSDEDRDRAKRCIETRSNYTCHYE"
     gene            complement(18849..19931)
                     /gene="hisC"
                     /locus_tag="U0280_000238"
     CDS             complement(18849..19931)
                     /gene="hisC"
                     /locus_tag="U0280_000238"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEM2270202.1"
                     /translation="MKWKKSLTGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTS
                     PKVAELQANSSVETEIYPDGWASSLRTVVADFYQLEEEELIFTAGVDELIELLTRVLL
                     DTTKNTVMATPTFVQYRQNALIEGAEVREIPLLVDGAHDLDGMLNAIDDNTTIVWVCN
                     PNNPTGNYIDLADIQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEKLIRTYKNLIITR
                     TFSKIYGLASARVGYGIADKAIIEQLNIVRPPFNTTSIGQKLAIEAIKDQAFIEACRT
                     SNANGIKQYEAFAKRFEQVKLYPANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALG
                     FPTAVRITIGKEEENSAVIALLEKLL"
     gene            complement(19931..20305)
                     /gene="aroH"
                     /locus_tag="U0280_000239"
     CDS             complement(19931..20305)
                     /gene="aroH"
                     /locus_tag="U0280_000239"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEM2270203.1"
                     /translation="MRAIRGATTIETNSPEAIYAATKELFEEILTQNEITDSEQLTSV
                     IITVTEDIFAAFPAKAVRETPGFEYVPVMGMQEIPVPNSLPMCIRFMVFTDLHKPLEA
                     INHVYLRGAKVLRPDLVKEEDA"
     gene            complement(20302..21399)
                     /locus_tag="U0280_000240"
     CDS             complement(20302..21399)
                     /locus_tag="U0280_000240"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEM2270204.1"
                     /translation="MPEITVRAKSKTYPVYINEFALEDVREKWTESLAKFSHVFVLTD
                     EHVAELHKAKLDAVLADLPVVTYYVAPNGEEAKTFRVYEDVMTKLIETGLDRKAVLIA
                     FGGGVIGDLGGFVAATYMRGIPFYQVPTTVLAHDSAVGGKVAINHPLGKNMIGNFYQP
                     EAVIYDTQFFATLPEREMRSGFAEMIKHALISDQTLLRALMDTFTEPKDFYTKDLTPF
                     LQRGIEIKANIVAQDETEQGVRAYLNFGHTFGHALEAYGNFGKWLHGEAITYGMIYAL
                     TMSETIYGLDFDLAEFKTWLKQLGYDTTFDATVPFNKILENMRHDKKTTFNEISMVLL
                     EEIGEPVIFKAEDDLIFETYKRVMRNGGNGI"
     gene            complement(21402..22568)
                     /gene="aroC"
                     /locus_tag="U0280_000241"
     CDS             complement(21402..22568)
                     /gene="aroC"
                     /locus_tag="U0280_000241"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEM2270205.1"
                     /translation="MRYLTAGESHGPGLTTIIEGLPAGMPLLAEDVNKELKRRQGGHG
                     RGARMRIEKDQVQITAGIRHGKTLGAPVAMFVENKDWKHWETVMSIEPVPEKNEKSRR
                     VSRPRPGHADLVGGMKYGHNDMRNVLERSSARETTVRVAAGAVAKKLLHELGIEVAGH
                     VLEIGGTRANLTRDYAVSEIQETSEASPVRCLDGVAAEEMMQKIDDAKKNGDTIGGIV
                     EVVVGGVPAGLGSYVQWDKKLDAKIARAIVSINAFKGAEFGVGFEAARKPGSEVMDEI
                     LWSKEDGYTRRTNNLGGFEGGMTNGMPIVVRGVMKPIPTLYKPLQSVDIDSKETFNAS
                     VERSDSCAVPAASVVAEAVVAWEVAVAVLEKFDGDRFDTLKKHVEEHRNLTKEF"
     gene            complement(22772..23215)
                     /gene="ndk"
                     /locus_tag="U0280_000242"
     CDS             complement(22772..23215)
                     /gene="ndk"
                     /locus_tag="U0280_000242"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEM2270206.1"
                     /translation="MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDREL
                     AEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIR
                     ADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI"
     gene            complement(23234..24199)
                     /gene="hepT"
                     /locus_tag="U0280_000243"
     CDS             complement(23234..24199)
                     /gene="hepT"
                     /locus_tag="U0280_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component II"
                     /protein_id="HEM2270207.1"
                     /translation="MKLNFLYANMQKDIDSVEKELKKALSGAAAETTSDAALHLLEAG
                     GKRIRPMFVCLSARLAPNADFDAVKNASVAIELIHMASIVHDDVVDNADLRRGRETIK
                     SKWGNHIAMYTGDFLFAKSLEYMTEIKDVAAHKMLSHVTVELSTGEIEQLKDKYNFDQ
                     SVRNYLRRIKRKTALLIAASCGLGGVVSGQSEADYQKLYRFGYYVGMAFQITDDVLDF
                     VGTEKELGKPAGEDLRQGNVTLPVFFAMEDPFLKKRISQVTEETPAEEIAVLVEEVKK
                     AGAKQAEDVATAYLKKAVEILDSLPQVPELKPLKQIVRVLDKRNY"
     gene            complement(24210..24923)
                     /gene="menG"
                     /locus_tag="U0280_000244"
     CDS             complement(24210..24923)
                     /gene="menG"
                     /locus_tag="U0280_000244"
                     /EC_number="2.1.1.163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethylmenaquinone methyltransferase"
                     /protein_id="HEM2270208.1"
                     /translation="MTETKEEKVHKVFEKISPSYDRMNSVISFKLHVKWRKETMKLMR
                     VQKGTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVEL
                     IHGNAMELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIP
                     GWKQVFNAYFRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVRY
                     ISHSGGASATHFGFKKKEQ"
     gene            complement(24946..25713)
                     /locus_tag="U0280_000245"
     CDS             complement(24946..25713)
                     /locus_tag="U0280_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component 1"
                     /protein_id="HEM2270209.1"
                     /translation="MTYQAREAGLKEVEQLVHEQAVYQYLQENNEGGQMDKDQMLFLH
                     EAISGSDLTDASAYRVVSATLYMILAHDTHEKIDEPGDVVQLTRKEQELTVLAGDFYS
                     ALYYRTLAELEMIPLLRALQSGVQETNTAKTNIYQLHVATDEEYLSQLTLTNAAIFAK
                     FAKYFMKDDTFIALGCQFFLLKRLQTELATYKEIGASRLKRAFDHGYFAKEAVSNFES
                     WLVAIIHDVKSEVKRLKDKSEPLSNILGKRIIEVIND"
     gene            complement(25770..26339)
                     /gene="folE"
                     /locus_tag="U0280_000246"
     CDS             complement(25770..26339)
                     /gene="folE"
                     /locus_tag="U0280_000246"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEM2270210.1"
                     /translation="MEQIDKQKIADAVKVILEAVGENPEREGLIDTPMRVARMYEEVF
                     AGLKKDPSVHFDTIFEEQHEELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAG
                     LSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPG
                     TKTITSAVRGAFKNDDKLRSEVLALIKHN"
     gene            complement(26575..26850)
                     /locus_tag="U0280_000247"
     CDS             complement(26575..26850)
                     /locus_tag="U0280_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEM2270211.1"
                     /translation="MANKTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQ
                     LIGFGNFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKEAVK"
     gene            complement(27261..28241)
                     /locus_tag="U0280_000248"
     CDS             complement(27261..28241)
                     /locus_tag="U0280_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEM2270212.1"
                     /translation="MEVTRTDKAVTLTWNKEEVSEGTVVFVSSSPKLEDNSDPVFKVT
                     NDVDHYSYDTKDIPIYFFLETPNGDRTTVSERILPLESVFNFRDMGGYASKNGKHVKW
                     GKLYRSSNLVNINENDAALLQKLHIKWICDLRSSSEVQAQPTPAIEGVLNKHIPIGTA
                     KNEETKLPVTNDTTIYEPLMGESYRVFVQSVEGFREIFTEVLEDAKAGLPFVFHCTAG
                     KDRTGVLGALLLTLLDVPEKTIFDDYAITNRYQDDILQEMGGIVALFSNGTEKIDLET
                     FRPMAEARPEYLEIAFDEMKKQYGSVANYLEKGIGITAAEKAAFQKEMLE"
     gene            complement(28344..29360)
                     /locus_tag="U0280_000249"
     CDS             complement(28344..29360)
                     /locus_tag="U0280_000249"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM2270213.1"
                     /translation="MTQKKVAILGAGSWGTGLALVLADNNHQPVIWGNLDKIVNEINE
                     SHTNSHYLPDIILPTEVKATLSLDEAIDGAEIVVIAIPTNAMRIVCKQLNEALKEPTI
                     LVHVSKGIEPETNLRMSEVIEDEIDASKRKALVVLSGPSHAEEVALRHPTTLCASCKD
                     LSAAEIVQDRFINNNLRIYTNDDVIGAEIGGALKNIIALGAGISDGLGYGDNAKAALM
                     TRGMAEITRLGVAVGSNPQTFYGLTGIGDLIVTCTSVHSRNWRAGNMLGKGENLDEVL
                     EKMGMVVEGVRTAKAVHGWAKKLDIDMPITESIYAILFENKDAREAVDLLMGREKKIE
                     KESF"
     gene            complement(29383..30693)
                     /gene="der"
                     /locus_tag="U0280_000250"
     CDS             complement(29383..30693)
                     /gene="der"
                     /locus_tag="U0280_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEM2270214.1"
                     /translation="MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYN
                     SAEWLGKEFNIIDTGGIDLSDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQ
                     VAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVR
                     AHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY
                     TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK
                     RIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQ
                     RLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKP
                     PTFVVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK"
     gene            complement(30837..31982)
                     /gene="rpsA"
                     /locus_tag="U0280_000251"
     CDS             complement(30837..31982)
                     /gene="rpsA"
                     /locus_tag="U0280_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEM2270215.1"
                     /translation="MSEDLFDVEVRNFEEGDKVTGTVTSVEDKQVYVGIPGSKLDGVV
                     PISELSNIHVETASDVVSVGDTLDLIVTKVEDDILVLSKRKVDAEKASDDIKAKFESG
                     EVFEAVVSDVVKGGLVVDLGVRAFVPASLVEDHFVEDFADYKGTTLTFKVVEFEPENN
                     RVILSHRAVVETEKASQKQALLSEIKEGDVIEGTVQRLANFGAFVDIGGVDGLVHISQ
                     ISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGIAEKAPVGSVL
                     EGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEAD
                     KRLSLSIKELKDAPVEEADYELPEENTGFQMSDLIGDKLKGLQNDDK"
     gene            complement(32341..33015)
                     /locus_tag="U0280_000252"
     CDS             complement(32341..33015)
                     /locus_tag="U0280_000252"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEM2270216.1"
                     /translation="MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTY
                     IALKNNIAYEDEKAIATLLQKTVIRFEPGEVQQVFVGEENVTEVIRSLEVTNHVSIVA
                     AHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKEN
                     MAKGFAGDLGQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDEVANKILSLA
                     ELKINN"
     gene            complement(33031..33993)
                     /locus_tag="U0280_000253"
     CDS             complement(33031..33993)
                     /locus_tag="U0280_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEM2270217.1"
                     /translation="MAKVALITTGGTIASKKTASGKLASGELSGEELAALCQLPTEIQ
                     IDIYSTFQLPSMHITLPDLISLKQLIESIFMDETYDGIVVTHGTDSLEETAYFLDLAV
                     TDARPIVVTGSQRAPEEPGTDAYVNIRHAIYTACEINLRQAGTVVVFNERIFAARYVK
                     KVHASNIQGFSAFGFGYLGIIDNDQVFLYQKPLEHECFDIRLDLPEVVVIKCYIGADG
                     LFIDAAIDSGVSGIVLEGVGRGQVAPKMMPAIIRALDAGIPVVITTSAEEGNVYTTYD
                     YEGSTFDLYNRGVILGKDYDSKKARMKLMVLLASQEEINQTNFR"
     gene            complement(34074..34793)
                     /locus_tag="U0280_000254"
     CDS             complement(34074..34793)
                     /locus_tag="U0280_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2270218.1"
                     /translation="MVKTRKEKREYEEPADYDMSSEGQDEFNNEPPMLSRSDSRRGKK
                     KTIFRYPLLNLLIVFFLLIPIVIVIVFVTVQNMGSSNEVKTETESTVNVSDNTQSKEE
                     KEKAKKAAEEKAAAEKAAEEKKAAEEKAAADKKKQEEDAVKAANAKKEQEAAEEKAAA
                     DKAAAEKAAAEKAEQQKANEASQQKAGGSHTVKAGDTLYSIARSTYGQAGAAAGVEKI
                     KQANGLGSDNVPVGTVLTIPQ"
BASE COUNT        10279 a         7720 c         5867 g        11098 t
ORIGIN      
        1 tattaaatag gtttcaggga ggaaaaaagt tatgctaaaa acattacgca cgaaaaatat
       61 ttgctttatt atgcttggta cggcgattta cgcatttggc ttagttaatt ttaatatcgc
      121 caataacctt ggtgaaggcg gtttagctgg agtaacctta ttccttcttc acttcttcca
      181 aattgatcca gcgtactcta acttaatttt aaatatacct ttgtttatat taggttggcg
      241 agttctaggc aatcgttccc tcatttatac gggtatcgga acggtgagtt tgtccttatt
      301 tttatggatt ttccagcgaa taccttatac gctagattta catagcgatt tacttttagt
      361 cgcccttttt gctggtggct ttagtggtat tgggcttggc ctcgtgtttc gctacggtgg
      421 gacgactggt ggtagtgata ttatcgccaa actgctaaat catacgaaag gcattagcat
      481 ggggcgcacg ctatttgcta ttgatgcaat tgttctcgtt gcctcactct cctatttaga
      541 tgtccgtcaa gttatgtaca cgctcgtcgc cgtattcatc ggctctcgcg taattgattt
      601 tgttcaagaa ggagcttatg cggctcgcgg tgcgctcatt atttctaaag ataatgacgc
      661 gattgcttcc catgtgatgc tcgcgatgaa tcgcggggtg acagtgttgg aaggtcgcgg
      721 tggcttctct aaaaaagacc aagacgtcct ttatatcgtc gttgcgaaaa atgaaataat
      781 tcaattaaaa aatattgttc aagcaattga cccacatgcc tttgtttccg tcagtgtcgt
      841 tcatgatgtg atgggagaag gtttcacact cgatgaaaac aagaatccta tctactaatg
      901 tatttacttg gctcatagtt ttctaaagcc aaatcgacgg tgtttccaag tgctaaatcc
      961 gctaaaagtt tgccaacata aggcccggta gttaaaccag aagcaccaag accattcgct
     1021 aaaaagactg actcaaatcc aggaagttga ccaataagtg gcgcaaaatc aggcgtgtat
     1081 ggtctagttc cgaccgccac atgggccact ttactcgcta aatccccttc cataaactgg
     1141 ctgacttctg ttagtatttc tgccttacct tctactgttg gtttcgtatc gaagccagca
     1201 gttttttcat gcgttgcacc gacgataatt ttcccattat caaaaggaac aattgatttc
     1261 gcgctcggtg gtaaaattac tggccattca tccgtttgaa attcgctaaa atcaagttcc
     1321 agcaattgcc ctttttgcgc taaaacttct gtatgaaaac tcgcctcgtc tagcaattct
     1381 tttaaccaag cgcctgctgc aatgattaat ttgtcgtaat gttcatcttc cccgtcaaca
     1441 cgaacttttc cgtcagtaga aaaatgcgct cgccccgact tgatttttac cccattttct
     1501 tttgcggcat aaagtagcct ttcacaaaat aaactaccgt tcactcgtgc tgctccgctt
     1561 acatagaccg agccaaatcc cggtttaact aacggaaatt tttgctttgt ttcctcttct
     1621 gacaacttta caatttcacc cataacttcc gcatcgaggc gtcgttcatt cgcaagatta
     1681 aacagttctg ttactttttc ttctgtcttt cgaagtgcga gcacaccaac ttgtttatag
     1741 cccgaattcc gcccagtatc tccttcgagc gtccccgcca attccttata aaaggcggca
     1801 ctattttttg caagctcata ccaatatttg tttcgccttt tagaaagcca cgggcaaatt
     1861 attccggctg cagcacgcgt tgcttgtccc ggttcatctg aatcaattag cgttacttgc
     1921 acgttttctt ttgacaataa ataggcggca ctagctccaa caattccccc gccgataatc
     1981 actatttttt gcatcgttac acccctctat atcaattgtg acacaagttg acttttttat
     2041 aactctttgt aataatatgt gaaaatagtt aagtttacaa actactaaaa atcctctaca
     2101 tcattctatc cattgtactg aaatccagct ttaattacaa aaaggcagat tttagcttat
     2161 ctcgtcgtca ttaccacata tcctcttaga gaacgctttc gcccattggt tggttctttg
     2221 tactgcgtct cagctaaaaa ttcatttatt tttccttctg cctatattaa cagttcagct
     2281 gattagttat gctgagatat gggagatttt tttatgccaa atattcttga ttcattatgg
     2341 aacagcatgg cgcttttttt atcagcgctt ttttttcacg gaatggcact gcgatctatt
     2401 agagaaaaaa agcctgcttg gttccaaatt aaattttcta atgaaattat taattatgca
     2461 ctgggcattt actacggcct tctaggtgtt tattttatta tccgcggatt acccggcaca
     2521 gattctggga tttatacaga tatgctactt aatattttaa ttgtcctgca tttattttct
     2581 tcggcaggtc ctgctactat cgcactatta ctaattgtcg caggaaaact ttttctcggt
     2641 gatgcgctgt ttgccaattt gatttacgcg tttttaatta tcggttttca ctttgtatgc
     2701 atggaagtcg ctaaacttcg acttagttcc gttcaaaaag tcgttttagt caaacttagt
     2761 gcgattcccc ttatgctatt ttatttacat caaaaaatac atttattgta taccataaat
     2821 gacttacctg tttggatact ctattttttg gtttcttttt ttattacgtt tattattgtt
     2881 tcagcggctt attatatcga tacatcgaat aagctaattt atgatttgca gcaatccacc
     2941 atccttgacc cgctaacagg tttgacgaat ttccgtcatt ttgaaaaggc gttcgaagca
     3001 gcatttaacc atgctacgtt aaaaaaatcg aatctaagtg tgattattat tgatattgat
     3061 tattttaaac gggtaaatga tacatatggc catttagtcg gaaatggggt tttatctact
     3121 tttagtcaaa tgctattaaa aatcagcttc ccgccaaaca cattgatatc aaggattggc
     3181 ggcgaggaat tcgccattat tttgccaaat attaatgtca gtgaaacgga gcatttggcg
     3241 gagaaaatcc gacgtaaagt cgaaaaaatt gatgttccga ttgttgcttc tggctccgtt
     3301 attactattt ctgctggtat cgcaaattat gacggcagaa attatccaaa tccgaacgag
     3361 ctactaaatg cagccgatca agcgctatat aatgcgaaac gaaatggacg aaaccaagtg
     3421 catattcgcg aaacagaacc agttgtttaa gagagtaaaa aggagatgag tccatttgtt
     3481 cgaactagtt aattcataca tagatagttt agcgctcttt ctcgctatcc tttttatcca
     3541 agggatgtct tttcgaaaaa taagacaata tcgcccaaat tggtttcaaa atggtggtag
     3601 acggctattt ctttccatcc tactaggcgt ctactatggt ttagcaggta tttattttat
     3661 ttatgaaggt gcttacgaaa ataatcccgt tatttacacg aatatgcgga ttttgatttt
     3721 gatggtaaca agtgttttcg gtggccgcgt tccactcatt ttcgcctatt tagtaatgct
     3781 ttttggtcgg attagttttg atattgcttc tcctgttact agtcgctatg tcattttgat
     3841 gacgctcatt tttgccgcgt gtttacttgt tactttttgg aaaaaacaac gcttttcgag
     3901 atttgttgct ttaatcattt taaacttccc agcgattctt tattatttcg tgaataattt
     3961 tgacgaagga cgaatcctgc aaggttttga gattatcgag tatttcctgc tattctttgt
     4021 aaccgcctta ctggtatttt acgcctgcaa ttacattgat aaaagtaatc tcgttatcca
     4081 aaatttgacg gaaactgcga tgacggatag tttaactaat ttaccaaaca tgcgcttttt
     4141 cacccaacag tttggttgga tttttgcgaa atcgcaaaaa aggaaaaaat ctttatctct
     4201 tttcatcatt gatattgatc attttaaaga aataaacgat tttcatggtc atcaagctgg
     4261 taataccgtt cttgctcagt ttagtagcat tcttaaaaat cgcaccttcc cgccaagaac
     4321 catgtttgca cgaattggtg gcgaagaatt tgctgtttta cttcaaaacg ttggtacaga
     4381 gcaagctgct ttaattgctg attttttccg tgaagaagtg gaacgagcga agtttcctta
     4441 taatcccgca agtggcaaag ttactgtatc tataggtgtt gcttctgcta gttccaactt
     4501 ttcaacaacc gaatcacttt tcgaagctgc tgaccaagcg ctctatcaag caaaacaaaa
     4561 cggccgcaat caaattgctg ttcatcaggg ggaactcgaa tgaaacgatt catcttaatt
     4621 ttcattttaa ttatccttat tggcgccgga tttttctttt tccttcgtcc agaacctaaa
     4681 aaaacagtga gtgcaccaaa agaaaccaca cccacttcca cctctgttca aacgtatgtg
     4741 aaagaaaact atactgcaaa aaacggttta attgtggatt acaaaaatgc gcaagaaccg
     4801 cattatttag ccgaaagcat cggactttat atggaatatt tggtcgaagt gaatgatagt
     4861 aaaactttcc aagaacaagt aagtcattta gaaaagaatt ttataaccga agataacttt
     4921 attaaatggg aagcaaccga cgcaacaacg actaatgcga ttgtagatga tttccgtatt
     4981 acagaagcac tttatcaagc gagcgaaaaa tttattttcc cgtcctacaa aaaaatggca
     5041 gataaaatcc tagccaacac caaaaaatat agcgctgaac aaggtgttcc agtagacttt
     5101 tacgattttg ttcataagaa aaaagcagat acgctccatt taagctatct aaatatccaa
     5161 gcgatgcaac agattaatta tcgagataaa gcctatctac caattcaaac tgttaatgct
     5221 gacccatttt ttacagaagt gtttcaaaat gaacagtttc aatatgctga ccctagtgaa
     5281 gttaatatga ttgatcaaat gctcattgcg atggcttatt ttgatgaaaa tggtgatgta
     5341 gagccaaatt tcgataattt tttacaaaca gaattagctt ctaaaggaaa agtttatgca
     5401 cgttatcaaa gagaaacaaa gaatccaagt tcagaaaacg aatctaccgc cgtttatgcc
     5461 tttttgacac agtattttaa caagacaaat caagctaaaa atggtaaaat caccaaagag
     5521 ttattagaga aaatggacac gtcaaatcca gaaacaaccc attttttcga ttatataaat
     5581 aaagaaataa ctcttaagaa ataacggaaa gaagttggac aaatgaaaaa gcccactgta
     5641 cgtgagatta ttgatcaaaa tcactttgat acaatatatg aaccgattgt tgttgtagaa
     5701 aacacacaaa ttttcggata cgagtcactc acccgcttaa aaacagatca ctggaatgcg
     5761 attagtgatt ttatcgaaga agcggaacag gatggtctgc aaaaagcatt tgagctgctc
     5821 acgcttcata acgcagtgaa acgctttaac aaaagcggag acacgccact atttgtcaat
     5881 atttcgtatg atacattttt agaaaatcaa gaagagttgc acgataccct acttgataac
     5941 gggaaaatag tttttgaatt tttggaaaca tccaagttac cacaagaacg aatgaacgac
     6001 ttagaaaaac aactgcttca attccagaaa aaacacgaaa ctaaatttgc tattgatgat
     6061 tttggctccg gttatgcgga cttgcatcgc gtttttgcgc accattctga ttttgtcaaa
     6121 accgatcgct tattactacg agatttattt gagagcgatg gcaaaaaaat cttctttgag
     6181 caacttcata attatgttaa aaagcatcat aaatccttaa ttgtcgaggg agtggaaaca
     6241 aaagagcagc tagaattcct tcaagaaatc ggcattccct atgcgcaagg ttattatttt
     6301 cattaaaaat aaaaaagaaa atctgcttat tgtcaggttt tctttttgtt tggaatcagt
     6361 tgttattctt ctttccccca tgtaaaatag aatagaataa aaaggagtgc tgaaaaatga
     6421 ctgtaaaacc aggttttgac tatatgaata atccattatt aaataaagga accgcttttt
     6481 caaaagaaga aagagcaagc tatcaattgg acggattact gccaccaatt atcgaaacaa
     6541 ttgaacaaca agccgtgcgc atcgagacgc aaatagaaaa tttagaaaca cctttacata
     6601 aacatcagct tttaacaaac ttatataatg aaaatcgcac cctctactat tatgtcgtaa
     6661 caaaaaacgt gactgactat ttgccaatta tttatacacc aactatcggc gacgcagtta
     6721 tccagtacca taaagaatac actgcgccgg atgaagcctt atttattgat gcctttgcac
     6781 ccgaaaaatt aagcgcatca ataaaaaact acgcaaaaaa taatccgaat attgatatga
     6841 ttgttataac agatggtgag ggtgtgcttg gaattggcga ctggggtgtg aatggtgtga
     6901 aaatcgctgt tggaaaatta gcggtttata cggttgcagc tggacttgca ccagaccgtg
     6961 ttctgccagt tgttattgac gccggaacga acaacgaaac acttcttaac gatccactat
     7021 atctaggaaa taaacgcccc cgcctttcag aaagtgaata tgacgctttt attgcttctt
     7081 ttgttaatgt tatgaaagaa gttttcccga aagccatcct tcactgggaa gactttggac
     7141 gcgcgaatgc aagtcgtatt ctgcataatt accgcgataa aatttgtaca tttaacgatg
     7201 atattcaagg tacaggggcc atggtggttg ctgctgttct tgcgacgatc caagtttcca
     7261 aaataccatt aagcgagcaa aagattatta ttttcggggc tggaactgct ggaatcggta
     7321 tcgctgatca acttagtgct cagtggatgc gtgaaactgg tcttcctttt gaatcggcga
     7381 aaaagcattt ttatttagtc gaccgaaatg gtttagtgct tgataatatg accgacttaa
     7441 ctaccgggca aaagaaatat gcacatccgt cgactgagtg gtctaacgtg cccacagata
     7501 cgttagaaaa cttaatggaa gcagttcatc caacaatgtt aatcggctgt tctggtgtca
     7561 ccggtgcctt taaagagagc atcgtcaaaa aaatgaccca gtatacagaa cgaccagcga
     7621 ttttgccact ttctaatcca acaaaattag ccgaagcaac tgcttctgat ttaattcagt
     7681 ggacagatgg aaaagcgctt attgttacag gtagcccttc caaaccagta gaatatcaac
     7741 atactactta tgaaatcggt caagcgaaca atgcacttct ctatccgggg ctcggactag
     7801 gtgctcttgt cactcgtgcg aaatatatta cagatggtat gctcgctgct gcttccatgg
     7861 ctgtcgctga gcagatttca ccaaacaaag caggcgcagc ccttctacca catgtgcgca
     7921 cccttcgcga aacatcgcgt gcagtagcca tcgctgtcgc taaccaagct attaaagaaa
     7981 acatccatca agtcgaatta acgaatgtca ccgaagctat cgagcgggaa atgtggcaac
     8041 ctatttataa aggagtttag atatgtttta caaaacgaag caatcactag atcaactcgt
     8101 ccaaaacggc tccactccgg gaattagtta tcaaataaaa actaattatc tggaagaaaa
     8161 taacatcatg ggattaaaat ccgtttttcc agaagcagaa atcttaccaa gaacaacaga
     8221 aaacatttat gatatcgctt ctttgaccaa agtaattgct acgactactc gtattttgca
     8281 acttatcgaa caacaaagat tccaattaaa cgaccctatt caaatgtatt taccagattt
     8341 ccggtacaat aatgttacga ttttacattt actaacacat agctccggcc ttgcacaaaa
     8401 tatccctaac ttctcaatga acaaccgaga ggacgttatt cgttatgtgt atgccacgcc
     8461 acaaattaat attcctggaa ccgtagtcac atacgccgat gctaattttc ttttactcgg
     8521 ttatttgatt agtaaaatgg acggcaatta tgaaaaagcc atccaaaaca atattttaga
     8581 acccctgagt atgacaaata caagttttca tcccgcaaat aaaaaacaag tcatcccaac
     8641 cgaacttgac caaacgcgcg gtttaattca aggtgatgtc catgatttta aagcttggac
     8701 tgccaaatca ggcacaggcc atgccggact ttttagcacc ctaagcgatc tttccaaatt
     8761 ccgagatgcg ctcatgctac aacacggtgc tccaattctt tctgaaaaaa cttggcaact
     8821 gatgcaaata aatcataccc ctggtctcaa tagaagtcgc gggctaggct gggatctacg
     8881 cggtgattct gtcttatatc ataccggatt cactggtact tttatggtgc tcgatttgaa
     8941 acaccaagcc agtttaattg ttctttctaa ccgcgttcat ccaagccgag ccaacccaaa
     9001 tttcgttgac aaacgtgaca gcattgtcga cactttttta gaagaagttg caaacacaac
     9061 ggaagtctag catattagct aggcttcttt ttctgccttt tgcctcccgc cctacttcga
     9121 taaaaactgt attaacacag ctgttgaaag ccttttctag ttatataaaa gaaatttatt
     9181 ttctttctgg ttttatattg ttttcgtttt cacaaaggag tatgctgttc aatgaagaaa
     9241 gattctaaag acttgtttct ggctttaagt gaaaaggaac acaattgaag gaggaaatta
     9301 taatgacaaa agcatgggat ggttttaaag gaaccgcatg gcaagaaaac attagtgtag
     9361 ggcaattcgt tcaagacaac tacactcctt acgatggcga tgaaagcttt ttagaaaaga
     9421 gcacaccaag aacaacgaaa ctaaatgaaa aaataaataa actagtagaa gaaatggatg
     9481 caaaaggcgg cgtacttgat atggataacg ctatcgtatc caatgttgca tctcacaaag
     9541 ctggttacgt ggatcaagaa aatgaagtta ttgttggttt acaaacagac aaaccattca
     9601 aattagcatt tatgccgaat ggtggtctta gaacagccga acaatgttta acagacaacg
     9661 gctattccat tgatcaagaa ttacatgact tctacgtaaa aaatcgttct acagcaaatg
     9721 atggtatttt cagagcatat acagacgata tcaaacgtgc gcgtcactcc catatcgtta
     9781 gtggtcttcc tgatgcatac tctcgcggaa gaatcatcgg cttgtaccaa aaaccagcac
     9841 tttacggtgt ggatcgttta atagcagaaa aacaacaaga cttgaaaaaa attgcgattt
     9901 cttctgatga aaacattcgt ttacgtgaag aaatttggtt acaaatcaaa gcacttaaag
     9961 acttaatcgt tttaggtaac gaatacggtt tagaacttgg acgtccagct gaaaatgcaa
    10021 cagaagcggt acaatggact tacatgggct accttgcttc tatcaaacaa gcaaacggtg
    10081 ctgcaagctc attcggtcgt attccgattt tccttgatat ctatatccaa cgcgatttag
    10141 aaaaaggcat tatcactgaa ttcgatgcac aagaattaat cgaacaatta acccttaaat
    10201 taagaatggt tcgttttgca agaacagatg gttacaacga actttacgct tccaatccaa
    10261 cattcgttac aacttcaatg gctggtatgg gcgcagacgg tcgtcatcgt gtgactaaaa
    10321 cagattatcg tttcttacac tgcttagata acctaggaaa ctcagcagaa ccaaacttaa
    10381 ctgtcctatg ggatgctcgt ttaccagaaa gctttaaaga atattgtatg aaaatgagtg
    10441 taaaacattc ctccattcaa tacgaaaatg ataaattaat gcaagaagaa ggctacggcg
    10501 atatgcaatg tatcagctgt tgcgttagcc cacttaaccc agaagcagac aaagacaaag
    10561 gtgaaacaca taacctgcaa tatttcggtg ctcgtgtcaa cgtactgaaa tgtcttcttg
    10621 gagctatcaa cggcggtaaa gatgatcttc acaaaaacca agtattcgac gttgtagaac
    10681 caattacaac cgaatacctt gaatacgaag aagtactaga aaaattcgat aaatcaatgg
    10741 actggttaac agacacttat gtagatgcga tgaacatcat tcactttatg acagataaat
    10801 acaactatga aagtatgcaa atggccttct taccatctaa agtaacagcc aacatgggct
    10861 tcggtatttg tggattcgct aacgtagtag atagcctaag tgccatcaaa catgccaaag
    10921 taaaaactat ccgtgacgaa gatggttttg tatatgacta tgaagtagaa ggcgacttcc
    10981 ctcgttacgg tgaaaatgat gaccgtgccg acgatatcgc tgtaatggtt cttaaaatgt
    11041 tcaaagacaa attagactcc cataaactat acaaagatag tgaagcaacc gtttctgttc
    11101 taacaatcac ttctaacgtt gcttactcaa aacaatgtgg taactccccc gtgcacaaag
    11161 gacctgtatt tgatgaaaat ggcaaaatcg tcaaagaacc agaattcttc agcccaggag
    11221 ctaacccttc taacaaagca aaaggtggtt tcttagataa ccttgctagt ctttctaaat
    11281 taccattcca ctatgcaaat gacggaatct ccttaacaat ccaaggagct ccaaaaatgt
    11341 tcggtaaaac aacggaagaa caacaccata accttgttgg tattctggat ggttacttta
    11401 caaaaggtgg tcaacacatc aacttaaacg ttcttaacca cgatgaagta atcgaaaaaa
    11461 tcaaagctgg tatcccagta atcttacgta tcagcggtta ttgcttaaat acgaaagatc
    11521 taaatgaaga acaaaaaatg gaactttgcc aaagaatgtt ccacgaaaaa ttaatcggtt
    11581 aataagaaaa aaagaaccaa atctgcgaat aacagatttg gttctttttt tatgcgttcg
    11641 aaacttccgc cgcataagct cctgccgtgt gcccagtcac tagcgcacaa gtaatattat
    11701 atccacccgt ataaccatta atatctagta tttccccgca gaaaaataat ccttccatca
    11761 acttcgattg catctctttt ggtttaattt cctttacaga aaccccacca cctgtcacaa
    11821 acgctttttc aaaatcaagc gtgccattca cttcaaaagt gaaatctttt aataactgaa
    11881 taaactgctc gatttttttc gggcttactt gtttataatc agccgtttca tctaagtctg
    11941 ctttttcaag taaaaacaat aacattttct cttgtaaaag cgaacttaac gaatttttca
    12001 aggctttctt cggattctct tctaacaatt tatacacatc tttcgaaagt tccgcagcgg
    12061 atacattcgg gaataaatca agacgcatct tcaccgtgct agcgcctgtt ttctttaatt
    12121 ctcgaaggac gaacatacta caacgaagag ccgctggtcc tgacacacca aaatgcgtga
    12181 aaatcatatc catttgatgc gtaataatcg gcttcccttt tgcatttaaa acagaaaggg
    12241 acacatcacg aagcgacgtt ccttgtaaca ctttttgttt aataaaaggc tcactagacg
    12301 taattggcac ttctgtcgga taaagttctg tgatggtatg tcctgctttt ttcgcccaag
    12361 catagccatc tccggtcgaa ccagtccgtg gaacagattt accgccaact gcaacaatga
    12421 ccgcactcgc tgaaatttct tggccgtctt tcagcgtcac ccctttcaca tgtccatcct
    12481 cataatccac ttgtttcacg gctgtttgca tgtaaatttt tacgcctagt ttttccatcc
    12541 gctgaatcat tgcctcagcg acagaacgcg cgctattcga tacaggaaac attctaccgt
    12601 ggtcttcttc ttttaacgcc acgccaagtc tttcaaaaaa gcgaataata tcttcattat
    12661 caaaggcatg aaacgcacta tataaaaagc gaccattacc aggaatatgt ttaataattt
    12721 cttctgctgg tcgcctgttc gttacattac aacgtccgcc accagacata attaatttac
    12781 gtcccaattt tggtcctttt tcaattaata gtactcgttt atttttctct gctgcactga
    12841 tagccgccat aagtccagat ggcccgccac caataacaat tacatcataa tccattgtcc
    12901 cgctccttta ctttatccgt gtttaagtat agcaagcatt cggctcagtg ccaagctttt
    12961 ttcaccaaac aaaaaaccca agaaaaatct caggtttttt gattctaatt tcgattcata
    13021 ttcgtaaaga taagtagcaa tcttagaagt tctagtacag ctacggccat tgcagcaaca
    13081 taagtcattg cagcagcact taatactttt ttcgcttgtg ggagttctga agatgcgact
    13141 agtccgccgc tttctaattg aacaagtgcc cgtttactag cgtcaaattc aactggtaac
    13201 gtaattaatt ggaaaagtac acccactgcc atcaaaataa tccccagcaa catgaaacta
    13261 gcaacgtttg caagcattcc gataattaag aacacccaag aaatattgga actaaacatt
    13321 gttacaggaa caagcgccga acgaaaacgc ataaatgcat aatcttgctg atcttgaatc
    13381 gcgtgtccta cttcatgggc tgcaacagct gccccggcga tagaacgacc gcggaagtta
    13441 gcttcagaaa gaaaaaccgc tttttttcga ggatcgtagt ggtcacttaa tattcctttt
    13501 gtttcatgaa ctggaacatt cgttaaacca ttggtatcca aaatatgacg cgcaacctcg
    13561 gcaccagtta aaccatttgc cacaccaact ttggaataat gtgcataggt agtttttacc
    13621 cgatactgtg cccaaagtgg aattgccgcg acgataataa aataaataat atactgacta
    13681 aacgacattt aatcatcttc ctcctactac tttttttcgg tgaatatcct tatgttctta
    13741 gtataaatta actatcacca agactcaacc tctttcactc atcatgagga aattctaatg
    13801 ttaagtgctt attttttatc gttttatcat atacaaacca tagaacaaat accgttaacc
    13861 aaaatgtcgc ataaccaatt tccggtaagt atttttctaa ccccatataa atcggcattt
    13921 ggccaaatac ataatcaatt acatcattat gaaataccca taccgctgca atcataaagt
    13981 gcccgattcg aaaacgataa aacggcgcat aaagaattcc ttctactgcc ataaaaccat
    14041 gcgtcaaaat caatgccaca gagccccaaa caagcatccc ttggtcaatc atataaaaaa
    14101 tattcatacc aactgcccat aaaccatact tcactaaaca tacaaaacct agtgcctcca
    14161 ttaaaggcca atgctttttc ccaagaaaag caactagcgc caaagtgaag aacaaaatcg
    14221 ccgttgggct atcaggtaca aacagccaaa agcgcggctc tgtcatttgt aattgcggta
    14281 aataccatat gtatccataa atcgctccaa gtaaattacc aaagaaaagt aatcgtaaaa
    14341 aggcccgatt tgcgagtaaa ctatataaca atatccccca gctcccttaa aaaatcctag
    14401 cacagcaagg aaatgatgca tctttcacat catttccata ctaactagga tttatttctt
    14461 attctttttc cgtatccatt tgctgtaaaa ttcgaactaa cttatgaaaa gcagcttcat
    14521 cacgtgtatc cagcgcctca tcgatctgtt gtaatacttt ttctcttgaa aattggtgca
    14581 cagattgata aataagcgca tccgccattt ctttttcctc atccgcaagc ttcactgctg
    14641 taaaaggatt atcttcacga acaagtgcgt attcaggcga agacattgcc tcttcaaaat
    14701 gaagttctac atacaactct tcgtcccaat ttaaccgaat atcatgaaat gctttttctg
    14761 gatcagtcgt cataatgtta cctttaaaaa ataggaacgg ttcggattca acgccgtgag
    14821 cactaagtga aagcccacgc gcacaccctt ccaaattatc aacaaaatga acatatttta
    14881 caatttgatc atggccagca atataattta aaacccacat tgcttctcta gtcttcatct
    14941 ggtgtttatt taaaaaccag cgaataaaat ctttcttctc gtctattgaa atggatgcct
    15001 tcatctttcc tcagtccctt cctgtattct ttttagcatt taatcaaata aagataaaat
    15061 ctctgtgtct tctggctcta gttctaaata gttacgcaaa acttcttgtg atttcgcgta
    15121 ctctccttct tcccttaaaa ataaaccata ttcctttaag aaagtaggat tgtttgtaaa
    15181 gtgcgagtat gccagttcat aatttgcttt tgctttatta tattgttctg tttcctgata
    15241 tgcaacactt acgtcccaga aaatttgtgg ttccgaaata acttcttccc caaggccttc
    15301 cactaattcg ataacccctt cgtagtcttc tttcgcaagt aataatttgt tcaactgcat
    15361 aattgcttcc gaatattctt catctagcac aattgcttga cgataaaatt cttcggcttc
    15421 ttctggcaaa cgtagcgtaa cagcaagctt cccagcctct aagaacattt ctttattaaa
    15481 ttcatcttgc gttaagccgt cccgaagcac tgcaatggct ttttccggtt cgccgttctc
    15541 ctcataactt ttcgctaaat aagagtagag cgttgtgtaa gagggatcat gttcacgcaa
    15601 atgttcgagc gcatgaatag ctttcgtgta atcttttgcc tgataagccg ttaaacccat
    15661 cccgaaaagt gtatcaaccg attccttatc ttcgagcgcg cgttcatagt aagataacgc
    15721 ttcttcaaat gccccactag cagcaaaagc ttcagcgata cgttcatata cagacaccgc
    15781 accattcgaa ataatcgtta atcctgcttc tacagcagtt tgataagact gtacagcgga
    15841 tgcgaatctt gcttgcgata aataatattc cccaagtgca aaatcaataa tcggctcatt
    15901 tggcgccatt tgtttcgctt cgagtaattt ctgctcactg acttcgaata aaccttgcat
    15961 ctgatataaa tcagctaata cgagcaaact ttcaatatat gcttcatctt ctttgtttac
    16021 tttttctaaa tagtcttgcg cagagtcgat atcgtctttt tcaagtgcta cttcagctgc
    16081 acggacaagc aactcgccct catccttgta ttttgctaat agaagttcgt ataaatcttc
    16141 cgtttcatct aggaatccaa gtgtaaataa ttcttctgct aaataatatt gttcttcatc
    16201 tgttcccgct tgcactactt catcaaaata tttcttcgca agcgccatat cttcatgctc
    16261 taacgcatgt aacattttat tagctaattc catttctgca ccttctttaa taataagtcg
    16321 tttttctatt ataccattac ttcactcata agaaaaagtg attgcctctc ttaaataaaa
    16381 ataccagcgc tgatgtgatt agcatacagc actggtagaa gtgattattt taaaagtgag
    16441 cgaatatctt caaagaaagt cgggtaagaa acagaaactg cttctgggcg ttctaattcc
    16501 acatcgcctt cctcgacaag aagtgctgca atttgtagca tcatgccaat acggtgatcc
    16561 ccgtagcttg ttacattggc cgcatgaagt ggtgttttcc cgcggataat taaaccgtct
    16621 tcggttggag taatatctgc gcccattttg tttagttctg tcgcaaccgc atcaatccgg
    16681 tttgtttctt ttacttttag ttcagcagcg tctttaataa tcgtcgttcc ttctgcttgt
    16741 gtcgctaaaa gtgcgataac cggaatttcg tcaattaaac gaggaataat gtcgccaccg
    16801 atttccgttc cttttaaatc gctagtttta actacaaccg tacccgctaa tttaccagta
    16861 cttctgctag aatctttgac aactaaactt ccacccattt gctcaactac atcaaaaatc
    16921 cctgttctag tagggttcaa gccaacatgc gtaagttcaa tttcactgcc gggtgtgatt
    16981 aagccagcta cgataaagaa cgcagcagag gaaacatcgc ctggaaccgt catttcttgc
    17041 ccagtaaatg tttggccacc tttgacgcga atggttaagc catccatttc aatttcaccg
    17101 ccaaattggc gaatcatgtg ttccgtatga tcacgagtct tttctttttc atggataatc
    17161 gtttcacctt ctgcttgtaa agctgcaaaa ataatcgcgc tctttacttg tgcactagca
    17221 actggcatat gatattccat gcgttttaat gattgcttcc catttatcgt aattggagca
    17281 aattcagagc catctttgcc atgcattttt gcccccattt gttgcagtgg tagcatgaca
    17341 cggttcatcg gacgtttcgc aattgattca tcccctaaaa tgactgtgtc aaaatctcgg
    17401 ccagctaaaa tgcccatcat taaacgaatc gttgttcccg agttaccaat atcaagtgga
    17461 ccatctgcct gttttagccc atcaaaacca gttccgtgaa caataatttc ttcttcggtt
    17521 tcttcaattt ttacacccaa tgctttaaat gccttaattg ttccaaggca atcatctgca
    17581 cgtaagaaat gacgaatgac cgtttttcct tctgcaatgg ccccgaacat aatgctgcga
    17641 tgggacattg atttatctcc agggactgtg attgcgccaa ccagcccttg tttatttgta
    17701 attaatttca tcgtcatttc tctcctattc gtaatggcat gtatagttac ttcttgtttc
    17761 aatgcaacgt ttcgcccggt ccctgtcttc atccgattgg aaagtaattt gtaacacacc
    17821 gaaaatatct tcccgtgttt ccaaaatctt gatgtttgtt aaactgattt cttcttcgcc
    17881 cagataccta gtcacttcag aaattacccc tggataatct ggtacatcga caaataaatc
    17941 gtaaaaagat ggaatcgcac caccttgatg aactggaagt gaatctcgaa attcttttgc
    18001 cccatcaaaa aaggcatata tagaactcgc gtcttcactt tcaagcatct caagcgcttc
    18061 gttcatactg tctcgccaaa tcgtcagctg tttcgttaac gttttttggt tgctaataga
    18121 aatatccgtc cacattcttg gatcagaaga agcgacccgt gtaatatcac gaaatccgcc
    18181 tgccgcaagt cgaaatgctg caggatgttc ttctgtaaag ctttgcgtct ggttcactaa
    18241 agccgccgcc acaatatgcg gtaagtggct caacatgcca gtaatttcat catgctcatt
    18301 tggtgataac actaagaact tagcattcgt accagacagc cacgtcctaa gttcagccac
    18361 tttgtcttct gctacatctt tcgttggtgt taacaaataa taggcatttt caaacaacag
    18421 ttctttagca gcacggacac cacttttatg cgaaccagcc attggatgac cgccaataaa
    18481 cgtaatacca ctttctctaa gtgccgtgga tgcttccatg atggttcctt ttgtactacc
    18541 tgtatctgta acgatcacat tttcctttaa acgcagccct ggtaaacgcg ttaataactg
    18601 ttctgtttct tttaccggac aacaaaaaac aagtaaatct gcttttggcc catctattaa
    18661 aatactttcg ccaatttcgt caatcacacc gagagacttt ccaacttcta acgaatgata
    18721 ggaaacgtca attccgatga tatgtgcttc tgggtgtttg gctttaatcg caagggcaat
    18781 agaaccgcca attaacccaa gcccaacaat aactaccgtc cctttcattc aaaaacgcct
    18841 ccaaacactt acaataattt ttctaaaagt gcaattaccg cactattttc ctcttctttt
    18901 ccgatcgtaa ttcgaacagc agttggaaaa ccaagcgccg cgccagaacg cgtaatatag
    18961 ccattttttt ccaagtagct aaaaatagtt cctgcttcaa ttcctaaatc tattaaaaca
    19021 aagttgccat tcgctggata cagttttact tgctcaaaac gtttcgcaaa cgcttcgtat
    19081 tgtttaattc catttgcatt agaagttcgg catgcttcaa taaaagcttg atcctttatt
    19141 gcttctattg ctaatttttg accgatgctc gttgtattaa acggcggacg aacgatattt
    19201 agttgctcaa tgattgcttt atccgcaata ccataaccaa cacgagcgct tgccaaacca
    19261 taaattttac taaaggtccg ggtaataatt aaatttttat aagtgcgaat tagtttttca
    19321 tgtttttcag gctgcggcgt cacatattca atatatgctt catctaaaac aacaagtaca
    19381 tcacttggta ctttatctaa aaacgcttga atatctgcta aatcaatgta attcccagtt
    19441 gggttattcg gattgcaaac ccaaacaatc gtcgtattgt catcaatcgc attcaacata
    19501 ccatctaaat catgcgcacc atccacaagt agcggaattt ctcttacttc ggcgccttcg
    19561 attaacgcat tttgacgata ctgcacaaat gtcggtgtcg ccatcactgt attttttgtc
    19621 gtatccagta aaacccgcgt caacagttca atcagttcat ccacaccagc tgtaaaaatc
    19681 agttcctctt cttccagttg gtagaaatca gcgaccactg tacgcaagct agaagcccag
    19741 ccatctggat aaatttctgt ttccacacta gaattggctt gaagctccgc cacttttgga
    19801 gaagttccca gtgggttttc gttagatgat agtttggtga ttttcgttaa accaagttct
    19861 gccatcactt cttcttcgcg ttttccaggt ttataagaag atagacctgt aagtgatttt
    19921 ttccatttca ttacgcatcc tcctctttta ctaaatctgg gcgcagtact tttgctcctc
    19981 gtaagtagac atggttgatg gcttcgagtg gtttatgtag atctgtgaat accatgaaac
    20041 gaatgcacat tggaagcgaa tttggcaccg gaatttcttg catccccatg acaggaacat
    20101 attcaaagcc aggtgtttca cgcaccgcct tagctggaaa agcggcaaaa atatcttctg
    20161 tcactgtaat gatgacggat gttagttgct cactatctgt tatttcattt tgcgttaaaa
    20221 tttcttcaaa taattctttc gtcgctgcat aaattgcttc cggtgaatta gtttctattg
    20281 tcgttgcccc tcgaattgct ctcaaatgcc attccctcca tttcgcatca cacgtttgta
    20341 agtttcaaaa atcaaatcat cttccgcttt aaaaataacc ggttctccaa tttcttcgag
    20401 taaaaccata cttatttcat taaaagttgt ttttttatca tgacgcatat tttccagtat
    20461 tttattaaat ggaacagttg catcaaatgt cgtatcatag cctaactgtt ttagccacgt
    20521 tttaaattct gctaaatcga aatccagtcc gtaaattgtc tcactcatcg tgagtgcata
    20581 aatcatccca taagtaatcg cctcgccgtg cagccacttg ccaaagtttc cgtaggcttc
    20641 aagtgcatga ccaaatgtgt gaccaaaatt caaataagcg cgcacgcctt gctcggtttc
    20701 atcttgcgca acgatatttg ctttaatttc aatcccacgt tgtaaaaacg gcgtcaaatc
    20761 cttcgtataa aagtctttcg gctccgtaaa tgtatccatt aaggcccgta gtaacgtctg
    20821 atcgctaata agcgcatgtt taatcatttc cgcaaaacca gagcgcattt cccgttctgg
    20881 caaagtagca aagaactggg tatcataaat gactgcttct ggctggtaaa agttcccaat
    20941 catgtttttg ccaagcggat gattgatcgc aaccttgcca cccacggcac tatcatgcgc
    21001 aagaaccgtc gtaggcacct gataaaaagg aatgcccctc atatacgtag ccgcaacaaa
    21061 accacctaaa tcaccaataa cgcctccacc aaaagcaatt aaaaccgctt tacgatcaag
    21121 acctgtttca atcaattttg tcatcacatc ttcatataca cgaaacgttt tcgcttcttc
    21181 cccgtttggc gccacataat aagtgactac aggtaaatca gcgagaaccg cgtcaagctt
    21241 tgctttatga agttccgcca catgctcgtc tgtcaaaaca aacacatggg aaaatttagc
    21301 taggctctcc gtccactttt cccggacatc ttctaatgcg aattcattaa tatatactgg
    21361 gtatgtttta cttttagcac ggactgtaat ttctggcatg tttaaaactc cttcgttaag
    21421 tttcggtgtt cctccacatg ttttttaagt gtgtcaaaac gatcaccatc aaatttttct
    21481 aacacagcaa ctgcaacttc ccaagcgaca acagcttcag ctaccacact tgcagcaggt
    21541 actgcacaac tatccgaacg ttctacactt gcattaaacg tttcttttga atcaatatcc
    21601 acactttgaa gtggtttgta taatgttgga attggcttca ttacgccacg aacaacaatt
    21661 ggcataccat tggtcattcc gccttcgaat ccaccaaggt tatttgtacg tctcgtgtag
    21721 ccatcttctt tactccataa aatttcatcc atcacttcac taccaggttt tctagcagct
    21781 tcaaaaccga caccgaattc agcgccttta aatgcattaa tacttacaat cgcacgcgca
    21841 atttttgcat ctagtttttt gtcccactgt acgtagctac caagtccagc tgggacacca
    21901 ccaactacaa cttctacgat accgccaatg gtgtcgccat ttttcttcgc atcatcaatt
    21961 ttttgcatca tttcttctgc cgctacgccg tctaaacaac gcactggaga agcttcggat
    22021 gtttcttgaa tttcgctaac cgcgtaatca cgtgttaagt tcgcacgagt tccaccaatt
    22081 tcaagtacat gaccagctac ttcaatgcca agttcatgca ataatttttt cgctactgct
    22141 ccagctgcca cacggacagt cgtttcgcgc gcgctagaac gttctagtac gttacgcata
    22201 tcgttatgac catatttcat accgccaact aagtccgcat gtccaggacg tggacgggat
    22261 acgcgacggg atttttcatt tttttctgga actggttcaa tgctcataac cgtttcccaa
    22321 tgcttccagt ctttattttc aacaaacatt gctacaggtg cgcctaatgt tttaccatga
    22381 cgaatccctg ctgtgatttg tacttggtct ttttcgatac gcatccgtgc cccacgacca
    22441 tgcccacctt gtcttctttt tagttcttta tttacatctt ctgctagtaa aggcattcct
    22501 gctggcaacc cttcaataat tgttgtaagc cccggtccgt gtgattctcc tgccgttaag
    22561 tatctcatct gctcatctct cctttttcta tttcagctag attttctagc gtttatattt
    22621 tagcgcttta aagtatatgt gtaatatctt aacatatgcc acgcgagaaa acaatacttt
    22681 cgtttcattc tttcatctta ccaaaaaacc gcatgaaatg gtaatttctc tataaaaaaa
    22741 gagcctaggt ttccctaaac tctatactat gttaaatcca agtgtcgatt gccttttgat
    22801 aacttaaaat ttcctgcggt gcaaaaaaca actgaatttc ccgtttcgca ctttctgggc
    22861 tatccgatcc atgaatcaca tttcgatttg tatgtaccgc ataatcagcg cgaattgttc
    22921 cggggtcagc ttctaacgga tttgttttgc ccatcatacg gcgagctgtt gcaatcgcat
    22981 catctccttc taacaccatc gcaaacactg gtccagaagt aataaatcca attaaatcct
    23041 cgaaaaaaga ttttccaata tgttccgcgt aatgtttttc tgctagttca cggtcaattt
    23101 gcattaattt tccagcaact atttttaagc cttttttctc tattcttgtg acaatttcac
    23161 caataagtcc tcgttctaca ccatccggct taaccattac ataagtttgt tccataaaga
    23221 atcctccctc acgttaataa tttcttttat ctaaaacacg aacgatttgt tttaatggtt
    23281 ttaattcagg cacttgcggc aaagaatcca gtatttctac agctttcttt aagtaggctg
    23341 ttgctacatc ttcggcctgt tttgcgcccg cttttttgac ttcttccact aaaacagcaa
    23401 tttcttctgc tggagtttcc tccgtaacct ggctgatgcg tttttttaga aaaggatctt
    23461 ccattgcaaa gaatactggc aatgtcacat ttccttgtct taaatcttcc ccagctggct
    23521 taccgagttc tttttctgtt ccaacaaaat caagtacatc atccgtaatt tgaaacgcca
    23581 tgccaacata ataaccaaaa cgatataact tctgataatc agcttcactt tgaccagaaa
    23641 caacaccacc gagtccgcaa ctagctgcta tcagtaaagc tgttttccgt ttaattcggc
    23701 gtaaataatt acgcacactt tggtcaaaat tatatttatc ttttaattgt tcgatttcac
    23761 ccgtagaaag ctccaccgta acatgtgata gcattttatg cgcagcaacg tctttaattt
    23821 ctgtcatata ttccagtgat ttggcaaaca aaaaatcacc ggtatacatc gcaatatggt
    23881 tgccccactt cgatttaatc gtctcgcgtc cgcgtcttaa atccgcatta tccaccacat
    23941 catcatgcac aatcgacgcc atatgaatta attcaatcgc tacactcgca ttttttactg
    24001 catcaaagtc tgcattagga gcaagtcttg ctgataagca aacgaacatt ggtctaattc
    24061 gttttccacc agcctctaat aaatgaagtg ctgcatcaga agtagtttca gcagctgcgc
    24121 cagaaagggc ctttttaagt tctttttcaa ctgagtcaat gtctttttgc atatttgcat
    24181 ataaaaagtt aagtttcatg cttgccacct tattgttcct tctttttaaa tccaaagtgg
    24241 gttgcactcg cgccgccact gtgtgaaata tatcttacgt atgaaaatcc ggcttcttga
    24301 aacatttccg caagtctagc cattcctgga aactcacgcg ttgattcttg taaccagcta
    24361 tattctttat aacttttcgc aaaaaacttc ccgaaaacag gcattacata gcgaaaataa
    24421 gcattaaaca cttgtttcca gccaggaata ttgggttgag acgtatcaat acatgccagc
    24481 tgtccacctg gttttagcac acggtacatt tctcgcagca cttgcatata atccggtaca
    24541 tttctaagcc caaagccaat cgtcacatag tcaaaactat tatctggaaa aggtaattcc
    24601 attgcattcc catgaataag ttctacattg tgcaaatccg cttcttttac tttttcgcga
    24661 ccaaccttca gcatattttc actaaaatca agccccgtca catgaccttc aggaccaatt
    24721 tcttccgcca tcataatcga ccaatctgcc gttccacagc aaacatcaag aacattcgtc
    24781 cctttttgaa cacgcattag cttcattgtc tctttacgcc atttcacatg tagtttaaaa
    24841 ctaataacac tattcattcg gtcataactt ggagaaattt tctcaaatac tttatgtact
    24901 ttttcttctt tagtttccgt catatcccga atctccttct atttatcagt cgttaataac
    24961 ttcgatgatt ctttttccta gtatattaga aagcggttct gatttatctt tcaaccgttt
    25021 cacttcactt ttcacatcat gaataattgc tactaaccag ctttcaaaat tagatacagc
    25081 ttccttcgca aaatagccat gatcaaacgc ccgcttcaat ctagacgctc caatttcttt
    25141 gtaagtagca agttctgttt ggagtctttt gagcaaaaag aactgacaac caagcgcgat
    25201 aaatgtgtca tctttcataa aatacttcgc aaacttggca aaaatagccg catttgttaa
    25261 cgtaagctga gataaatact cttcatctgt tgcgacatgt aactggtaaa tattggtttt
    25321 tgctgtgttt gtttcttgaa ccccgctttg caatgctcga agcagtggaa tcatttctaa
    25381 ttcagcaagt gtgcggtaat agagagcact ataaaaatcc ccagcgagaa ccgtcaactc
    25441 ttgctcctta cgtgttagct gtacaacatc gcctggttca tcaatttttt catgtgtatc
    25501 atgcgctaaa atcatgtaca gcgttgcact aacgacgcga tatgcagaag catcagtcaa
    25561 atcagagcca gaaatcgctt catgaagaaa tagcatttga tctttgtcca tttgcccgcc
    25621 ttcattattc tcttgtaaat attgatagac tgcttgctca tgtaccaact gctccacttc
    25681 ctttagccca gcctctcttg cctgataagt catttaacaa tcccctttga atctccttat
    25741 tatgtaaaaa attataccat aaaggatatt taattatgct taattaaagc taaaacttca
    25801 cttctaagct tatcgtcatt tttaaaagca ccacgaacag cacttgtaat tgtttttgtt
    25861 ccaggtttat ttacaccgcg gatagtcatg cacatatgct ctgcttccat gatgaccatt
    25921 acacccaacg gttttagttt ttccatcata atttctgcaa cagtcgttgt aatccgttct
    25981 tgtaactgcg ggcggcgact tacatcatcc actacgcgag caagtttact aagaccagca
    26041 actcttccat tttgtggtaa gtatgctaca tgagctactc caaaaaaagg gacaaggtga
    26101 tgttcacaca tagacgaaaa gcgaatgtct ttcacaagta ctaattcttc atgttgttct
    26161 tcaaaaatag tatcgaaatg aacagaagga tcttttttca gcccagcgaa aacttcttca
    26221 tacatacgag ctactcgcat tggtgtatca atcagtcctt cacgttctgg attttctcct
    26281 actgcttcta aaataacttt taccgcgtca gcaatctttt gcttgtctat ttgctccatc
    26341 cttaattccc ctatcttttt agcattatat accttgtata tcttaacaca gccaaacttc
    26401 aaggtaaatt taatttgctt gaataagtga taataatagg ggtttttttg ctttcgtaag
    26461 tatattccct atttctaaaa cagaaaacca ctaaaaatgg gcataaaaaa actagcctag
    26521 cttaattata aaattaaggc cagactagag ttagtgctta aaagtctatg tagcttattt
    26581 aacagcttct ttaagcgctt taccaggttt gaaagctggt actttacttg cagggatgtc
    26641 gatttcttct ttagtacgag ggttacgacc tttacgggca gcacgttcac gtacttcaaa
    26701 gttaccaaat ccgattaatt gaactttttc acctttagat aaagaagttt gaatagtttc
    26761 gaatacagct tctactgctt tcgctgcgtc ttttttagaa agatcagcta gttcagcaac
    26821 gctatttact aaatcagttt tatttgccat tgtgttttca cctccttcac agaatactac
    26881 aaaataagca ggtacaagat atacctgtat ttctcttttt ttccaaaaac aaaaatcaat
    26941 ttggaaatct aaggagaatc atgactgaaa tggcttaact acaagcctta acagtaattc
    27001 tgataaaaga ttatcacata atccctacaa ctgcaaggaa taatgccaaa ctgacaccgt
    27061 ttcttaacat tttcaatcac aaatattttc tttaaatgct tgaaaacgtg atagtatcaa
    27121 cctgttatcc ataatactaa cttggaagcc ttagaatagc aagcgatacc accacaatta
    27181 gctaaaatag ttcttttttc ataaaaatat gggtaaattt gcgtctatta cctgaaaact
    27241 ctaggtttct gagcctagtt ttattctaac atttcttttt ggaaagctgc tttttctgcc
    27301 gcagtaattc caattccttt ttctaaataa ttagctactg agccatattg ttttttcatt
    27361 tcatcaaagg caatttccaa atattcagga cgagcttctg ccattggcct gaacgtttct
    27421 aaatcaattt tttcggttcc attcgaaaag agcgccacga ttcctcccat ttcttgtaaa
    27481 atgtcgtcct ggtagcgatt agtgatggcg taatcgtcga aaatcgtttt ttctggtaca
    27541 tctaacaatg ttagtaataa tgcccctagg acgcctgtac ggtcttttcc tgcagtgcaa
    27601 tggaaaacga acggcaatcc agcttttgca tcttctaata cttctgtaaa aatttctcta
    27661 aagccttcca ctgattgcac aaacacgcgg tagctttcac ccatcagcgg ttcataaata
    27721 gttgtatcat ttgttaccgg tagctttgtt tcttcatttt tggcagtacc aataggaata
    27781 tgtttattta gcacaccttc aattgcaggc gtaggttgtg cttgtacttc cgaactactg
    27841 cgcaaatcac aaatccattt aatatgtagt ttttgaagca aagctgcatc gttctcatta
    27901 atattcacta aattagaaga gcgatataac ttaccccatt ttacatgctt gccgtttttg
    27961 gatgcataac cgcccatatc tcgaaaattg aatacacttt caagtggcaa aattcgttct
    28021 gaaacagtgg ttctatctcc gtttggtgtc tctaaaaaga aataaatagg aatatccttt
    28081 gtgtcatatg aatagtgatc aacatcattt gttactttga aaacaggatc actattatcc
    28141 tctagtttag gactgctact tacaaaaacg actgtgcctt cgctgacttc ttctttgttc
    28201 caagttagtg ttacggcttt atctgtacga gtaacttcca tattatccac ctacttttta
    28261 ttatttggct cttctgctac attttagcat atttcataaa aaaagagcca aaataagcgg
    28321 atagcccatt ctgactcttt ctattaaaat gattcttttt cgatcttttt ttcgcgaccc
    28381 attaataaat caactgcttc gcgagcatct ttattttcga ataaaatcgc gtaaatcgat
    28441 tcggtaattg gcatatcaat atctagtttt ttcgcccaac catgtactgc tttagctgtt
    28501 cgaacacctt caacgaccat gcccattttt tctaatactt catctaaatt ctcgccttta
    28561 cctagcatat taccagcacg ccaattacgt gaatgcacac tagtacaagt aacgattaag
    28621 tcaccaatac ctgtcaatcc gtaaaatgtt tgcggattag agccaacagc aacaccgaga
    28681 cgagtgattt ctgccatccc gcgagtcatt agtgccgctt tagcattatc gccataacca
    28741 aggccgtcag aaattcctgc acctagtgcg ataatatttt tcagcgcgcc accaatttct
    28801 gcaccaatca catcatcatt cgtataaata cgcaaattat tattgatgaa acgatcttga
    28861 acaatttctg cagctgataa atctttacag ctcgcacaaa gtgttgtcgg atgacgaagc
    28921 gcaacttctt ccgcatgact tggtccagaa agaacaacaa gcgctttacg tttggacgca
    28981 tctatttcgt cttcaatcac ttcggacatt cgaagatttg tttctggttc aataccttta
    29041 ctcacatgca ctaaaatggt tggttctttt agcgcttcat ttaactgctt acaaacgatt
    29101 cgcatcgcat ttgttggaat agcaattacg acaatttctg caccatcaat agcttcatca
    29161 agtgacaatg tcgcttttac ctcagttggt aaaataatat ctggcaaata gtgactattc
    29221 gtgtgcgatt cgttaatttc attcacaatt ttatctaagt ttccccaaat aactggttga
    29281 tgattattat cagctaggac aagtgcaaga cctgttcccc aacttccagc gccaagaata
    29341 gctacttttt tctgtgtcat tatatttttc ctcccgaaaa ctttacttac gcttacgagc
    29401 aatcactcga attggcgtac cctcaaacgg aaatgcctct ctaatccggt tttctaagaa
    29461 acgttcatac gagaaatgca ttagttctgg atcattaaca aatacaacaa acgtcggtgg
    29521 ttttacagcc acttgtgttg tatagaaaat cttcagtcgt ttacctttat ccataggtga
    29581 tgggttcatt gcaacggcat cactaataac atcattcagc atacttgatt gtacacgtaa
    29641 tgaatggtta tcgcttactt gattaataag tgggaatagg ttatttaagc gttgttttgt
    29701 tttcgcagat acaaagacaa ttggtgcata gcttaagaat tggaattgct cccgaatatc
    29761 ttccgtccat acgttaattg ttttttcatc tttgttaatt gcatcccatt tgtttactac
    29821 aataataatc gcacgtccgg catcatgcgc atatccagca attcgtttat cttgctcacg
    29881 aataccttct tctgcgttga taaccacaag aacaacgtct gagcgttcaa ttgctctcat
    29941 tgcacgtaaa acactatatt tctctgtgct ttcatacact ttcccacgtt ttctcattcc
    30001 ggctgtatca atcatgacat aatcttggcc atcgaaagta taagttgtat caattgcatc
    30061 acgagttgta cccgcaatat cagaaacaat aacacgatct tctccaagaa gtgcatttaa
    30121 aatagaagat ttaccaacat ttggtcgacc aatcaaacta aatttcactg tatcgtctgg
    30181 atattcttcc tcttcttctt ttggaaaatg agcccgaaca gcatcaagca tgtcgccaag
    30241 ccctagccca tgtgaaccag aaattggata cggttcacca aacccaagag aataaaagtc
    30301 ataaatttga tctcgcattt ctgggttatc tactttatta atcgctaaaa caattggttt
    30361 attagaccgg taaagaattt ttgctacttg ttcgtctgca tcggtaaccc cttcacgacc
    30421 attggtaata aaaataatta cgtctgcttc atcaattgcg atttccgctt gtgcgcgaat
    30481 ttgctctaag aatggttcat cggaaagatc aataccacct gtatcaataa tgttaaattc
    30541 ttttccaagc cattccgctg aattatatat gcggtcacgt gtcacaccgg gaacatcttc
    30601 cactatggaa acacgttcac caacgattct gttaaaaata gtcgatttgc caacgtttgg
    30661 acgtccgaca atcgctacaa ctggttttgc cattatttca ccttcttttt tctcgaatcc
    30721 tatttatcaa actttcttta gtttatcagt aaaacagctt actggcaatg aaaagttcga
    30781 tttgaaaaag aaaaagagcc catgggaaca gtctccctag gctcttttgc gtacaattat
    30841 ttatcgtcgt tttgaagacc ttttaattta tcaccaatta aatcgctcat ttggaatcca
    30901 gtgttttctt ctggaagttc ataatcagct tcttcaactg gagcatcttt taattcttta
    30961 atgcttaatg ataaacgttt gtctgcttca tttacttcaa gtactttcac ttctactgtt
    31021 tgcccttctg aaaggacttc ttgtggtgtc ccaatatgtt catgagaaat ttgagaaata
    31081 tgaaccaaac cttctactcc tgggaatatt tccacaaatg caccaaaagt aactaggcgt
    31141 actacttttc cttctaaaac agaaccaact ggcgcttttt cggcaatgcc gtcccaaggt
    31201 ccaggtaaag tcgctttaat agaaagagaa atacgttcat tttcaggatc aatcccaata
    31261 actttaaccg ttactttttg accttcttct aacgcttctt gtggtgttgc aatatgttta
    31321 taagaaattt gtgagatgtg aactaatccg tccacgccac caatatcaac gaatgcacca
    31381 aaattagcta aacgttgaac agtaccttca atcacgtcgc cttctttgat ttcgctcagt
    31441 agcgcttgct tttgactagc tttttctgtt tccacaactg cacgatggct taaaatcact
    31501 cggttatttt ctggttcaaa ttctactact ttgaaagtaa gagtagttcc tttgtaatct
    31561 gcgaaatctt ccacaaaatg gtcttccact aaagaagctg gaacgaacgc acgaacacct
    31621 aggtcgacaa ctaatccacc tttaacaaca tcactgacta ctgcttcaaa aacttcacca
    31681 gattcgaatt tagctttaat atcatcagat gctttttctg catccacttt tcgtttagat
    31741 aaaacaagta tatcgtcttc tactttagtg acaatcaaat caagtgtgtc gccaacgctc
    31801 acaacgtcag aagctgtctc cacatgtata ttggaaagtt cacttattgg aacgacacca
    31861 tcaagtttgc tacctggaat accaacataa acttgtttat cttccacgct tgtaactgtg
    31921 ccagtgactt tgtctccttc ttcaaaattt ctaacttcca catcaaataa atcttcagac
    31981 atgtgtagcc ctccattcgt tagtcgaatt ttaggaattt ctaattcaga agcaaccttc
    32041 acgcttgctt catctgcttg actagttttc ctagataggc aaattccgat taaataaaga
    32101 aaaatatcaa atacaccttc tgtaaaactg atcttccagc tagaaaatcc tttcaagata
    32161 cttttcacaa agtaaaaaat ctctcttata acatcctaca aatccagaca tttgtcaagc
    32221 tcttttaagg ggttggaaaa gcctacaggg cgtgaaatcg cttcgtttgt ttagcctttc
    32281 acggttaaat taaaaaagtg ctacatttcc atttagttaa gaaaatgtag cacttttttg
    32341 ctaattattg atttttagtt ctgctagtga aagaatttta ttggctactt catcaatcga
    32401 cattgatgtt gtatctactt caatggcatc atctgctttt tttaaggggg agtgtgttct
    32461 tgtataatct aaatgatctc gttcttcaat ttcttttttg agttggccta aatctccagc
    32521 aaaacctttc gccatattct ctttatagcg acgttccgct cgttcttcta cgcttgctag
    32581 taagaatatt tttagttcgg cgttaggaag aactgcagta ccgatatcac gaccatccat
    32641 tacaattccg ccttctgtag caaaaacttg ttgacgttct tggagtgctt cacgaataga
    32701 cgggtgtgcg gcaacgatag atacatgatt ggtcacttct aaagaacgaa tcacttctgt
    32761 gacattttct tcacctacaa atacttgttg tacttcgcca ggttcaaaac gaataactgt
    32821 tttttggagt aaagtagcta tagctttttc gtcttcatat gcgatgttat tttttaaagc
    32881 gatataggtt actgcacgat acatggcacc cgtatcaata tagacaaagc gcaatttttt
    32941 tgcaacgatt ttcgccaccg tgcttttccc agccgcagcc ggtccatcaa tcgcgataca
    33001 tatcttttta gtcataaaat aaaactcctt ttatctgaaa ttggtttgat taatttcttc
    33061 ttgtgatgct aaaagtacca ttaatttcat ccgtgctttt ttgctatcgt aatcttttcc
    33121 taaaataacg ccacgattat acaagtcaaa cgtgctacct tcataatcat atgtagtata
    33181 tacatttcct tcttccgcac ttgttgttat gacaactgga attcccgcat ctaatgctct
    33241 gataatagct ggcatcattt ttggcgccac ttgccctcgt ccaacacctt ctaaaacgat
    33301 tcctgatacg ccactatcta tcgctgcatc aataaacaaa ccatctgcac caatataaca
    33361 tttaatcaca accacttctg gtaaatcaag gcgaatatca aaacactcat gctccagtgg
    33421 tttttgatac agaaaaactt ggtcattatc aataataccc agatagccaa acccaaaagc
    33481 actaaaacct tgtatgttgg atgcatgaac tttttttaca tatctcgctg caaaaattcg
    33541 ttcattgaaa acaacgactg tcccagcttg acgtaaattt atttcacacg ctgtataaat
    33601 tgcatgacga atattaacat aggcatctgt ccctggctcc tcaggtgctc gctgagatcc
    33661 agttactacg attggtcgcg catcggttac tgcaagatca agaaaatagg ctgtttcttc
    33721 taatgaatct gttccgtgcg tcactactat tccatcatat gtttcatcca tgaagataga
    33781 ttcgataagt tgcttcagac tgattaaatc aggtagcgta atgtgcatag atggtaattg
    33841 gaaagtagaa tagatatcaa tttgaatttc tgttggtaat tggcataatg cagctaattc
    33901 ttctccagat aattctcctg atgcaagttt tcctgatgct gttttcttac ttgcaattgt
    33961 accgcctgtt gtaattagtg ctacttttgc cacggttatt cccccctaca ttttcctttt
    34021 aaacaaacaa atgagtctcg gaagcgtttc ccagacccat tcagtgttgt ttattactgt
    34081 ggaattgtta gaactgtacc aactggaaca ttgtcacttc ctagtccatt ggcttgttta
    34141 attttttcta ctccagcagc tgcccccgct tgtccatatg ttgaacgtgc aatactataa
    34201 agggtgtccc cagctttaac agtatgagat cctccagctt tttgctgtga ggcttcattc
    34261 gctttttgct gctcagcttt ttcagcagca gctttctcgg cagcagcttt gtcagccgca
    34321 gctttttctt cggcagcttc ttgttctttt tttgcatttg cagctttcac tgcatcttct
    34381 tcttgttttt tcttatctgc cgcagctttt tcttcggcag cttttttctc ttcagctgcc
    34441 ttttcagccg ctgctttttc ttcggcagct tttttcgctt tttctttttc ttctttagat
    34501 tgcgtgttgt cagatacatt tacggttgat tctgtttctg ttttcacttc atttgatgaa
    34561 cccatatttt gtactgttac aaatacaatc acgataacga ttggtattaa tagaaaaaaa
    34621 acaatcaata aattaagtaa tgggtatcta aaaatggttt tcttttttcc tcttctgcta
    34681 tcagaacggg ataacattgg cggttcattg ttgaattcat cttgaccttc agaactcata
    34741 tcataatcag ccggttcttc gtattcccgt ttttcttttc ttgtttttac cactcaaagt
    34801 tcctccttta gtgctttcta aacttatcct atgcactatt attggcacag agaagtgtta
    34861 catatgatgt taataaatga aatacctttg aaataattat acccataaac gcaacataca
    34921 acaacactta aaccactttt ttagaaaaaa aagcaagaat tatt
//
LOCUS       DASDXX010000006        33055 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.006, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000006 DASDXX010000000
VERSION     DASDXX010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 33055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33055
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.006"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(117..1628)
                     /locus_tag="U0280_000255"
     CDS             complement(117..1628)
                     /locus_tag="U0280_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEM2270219.1"
                     /translation="MNQSETKALEALQNGSDIRGIAIATEKYQITLTDERVEKIAYGF
                     AKWLKEEKKVEGQAKVAIGHDSRLSAERLKAALVKGLTFAGINVVDVGLATTPAMFMA
                     TQYEDYDCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADKSFIENGLNL
                     GKVTKQDLLSTYAADLTDKIRAGITDAADKMKPLLGSHIIVDAGNGAGGFFAEKVLAE
                     LGADISGSQFLDPDGNFPNHIPNPDNEEAMASLKKAVLASGADLGVIFDTDVDRAAIM
                     DKNGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLQTFIEAKGGKQHRFKRGYR
                     NVINEALRLNADGTPSEIAIEVSGHAALKENYFLDDGAYLIAKILMTYATLRKNGKDL
                     PDLIADLREPAESEEIRLSITATDFKAYGKEVLADFLTFVEADPDMELEPVNQEGIRV
                     NTKGALGEGWFLLRMSLHEPVMPMNLESDEAGGIRKVKNRLAGFFASKAELKM"
     gene            complement(1697..2572)
                     /locus_tag="U0280_000256"
     CDS             complement(1697..2572)
                     /locus_tag="U0280_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM2270220.1"
                     /translation="MLSKMEINKRALKENMALLACPICGEAFEFKEPQSFVCLEGHGF
                     DIAKPGYVHLLKQAHKTKYDQALFESRKKVIASGFFEKLIERVTEIIAEKKKEQLVLY
                     DAGCGEGSHLARVVSNLQATGVNVQAVGLDIAKEGVKQAARDYPGTSWTVADLANCPN
                     QAETADVILNILSPSNYVEFKRLLKKDGFLLKVVPEANYLRELREFIYVDEKSSYSNE
                     SVTSRLAEKLSVEHVERVTYKAPIAKELFADFLEMTPLGWHIEADKKSELLGNPPEEL
                     TVDLQIIIANRAHLL"
     gene            complement(2625..3107)
                     /locus_tag="U0280_000257"
     CDS             complement(2625..3107)
                     /locus_tag="U0280_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM2270221.1"
                     /translation="MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGR
                     KTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYR
                     LFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
                     "
     gene            complement(3123..4067)
                     /locus_tag="U0280_000258"
     CDS             complement(3123..4067)
                     /locus_tag="U0280_000258"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEM2270222.1"
                     /translation="MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFDLQEGFPI
                     MTTKRVPFKLVVSELLWFLHGDTNIRYLLQHNNNIWNEWAFERFVKSDDYKGEDMTDF
                     GLRAERDSAFKEVYQAEMEKFKARILEDEAFANKYGELGNIYGKQWREWKTSQGETID
                     QLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSA
                     DIFLGVPFNIASYALLTHLIAREVGLEVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHK
                     LPKLVLSDKPATIFDFDVADISLDGYNPDPAIKAPISV"
     gene            complement(4080..5972)
                     /locus_tag="U0280_000259"
     CDS             complement(4080..5972)
                     /locus_tag="U0280_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM2270223.1"
                     /translation="MKQLKVENLTKTYGGKSLFENISLTITEGERIGLIGVNGTGKST
                     LLQIISGSESGDKGTVTKAKDYTIGYLAQDPEFNEEDTVLSAVFDGDTAALRAMRKYE
                     EVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELS
                     GGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFL
                     DRVTNHMVELDRGSAYRYVGNYEKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGP
                     QGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQV
                     LQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNE
                     EMDPDMRMIAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRL
                     FLLRILMERPNVLLLDEPTNDLDTQTLTVLEDYLESFNGTVITVSHDRYFLDKVVNKL
                     LVFRAIGEVEIFYGEYSDYLKELEAKAKPAKSMKKMANTSVEKAAPEKKEKVKLTYQE
                     QLEWDGIEDAISELEQTIESLNETLEQTGADFTKAAEISELITAKETELEQMMERWEF
                     LSQYAE"
     gene            complement(6092..7774)
                     /locus_tag="U0280_000260"
     CDS             complement(6092..7774)
                     /locus_tag="U0280_000260"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009928213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEM2270224.1"
                     /translation="MSNKVKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKL
                     SYDTIHSLKDKEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSKKDKKTVIALREPSL
                     GPTMGIKGGATGGGYAQVIPMEDINLHFTGDFHAITAANNALSAFIDNHMQQGNDLDI
                     DGRRIVWKRVVDLNDRALRKVVVGLGGPIQGVPREDGFDITVASEIMAIICLASDLKD
                     LKKRLSEIVIGYNYKKEPITVGEMGYEGALTLLLKDALKPNLVQTLEHTPAIVHGGPF
                     ANIAHGCNSVSATSTALRLGEYVVTEAGFGADLGAEKFLDIKVPALGKAPDCVVIVAT
                     IRALKMHGGALKTELSEENVDALAKGFTNLQKHTESIQTFGIPYVVAINKFITDSDAE
                     VAKLEALCKEHGIPFSLTEVWEKGGDGGLELADKVIAAVESGEADYKRIYDDAWSMEE
                     KLEAIVTKVYGGIGVELSSKAQKQIVEFKKYGWDRYPICMAKTQYSLSDDPTLLGRPT
                     DFVIHIREFIPKLGAGFVVALTGDVMTMPGLPKKPAALNMDVDENGNAQGLF"
     gene            complement(7932..8360)
                     /gene="mntR"
                     /locus_tag="U0280_000261"
     CDS             complement(7932..8360)
                     /gene="mntR"
                     /locus_tag="U0280_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HEM2270225.1"
                     /translation="MPTPSMEDYIEKIYSLIETKGYARVSDIADELFVHPSSVTKMVQ
                     KLDKDEYLIYEKYRGLILTPKGTQMGKRLLERHALLESFLSIIGVDPSHIYHDVEGIE
                     HHLSWNSIDRIGDVVQFFENHPDALKTLKAMETTKPETKE"
     gene            8725..8925
                     /gene="cspD"
                     /locus_tag="U0280_000262"
     CDS             8725..8925
                     /gene="cspD"
                     /locus_tag="U0280_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein CspD"
                     /protein_id="HEM2270226.1"
                     /translation="MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEG
                     QAVTFEVVEGNRGAQAANVEKA"
     gene            9049..9450
                     /locus_tag="U0280_000263"
     CDS             9049..9450
                     /locus_tag="U0280_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI family protein"
                     /protein_id="HEM2270227.1"
                     /translation="MEVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAE
                     FIAIKLGLEEAIKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLEAILEMADSFEL
                     FFAEWRNVSQNKQADQLARQAIKKQKQPGVK"
     gene            complement(9469..10341)
                     /locus_tag="U0280_000264"
     CDS             complement(9469..10341)
                     /locus_tag="U0280_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease"
                     /protein_id="HEM2270228.1"
                     /translation="MTENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQG
                     FMRHMFAAIRQSNPTHTLICWDMGSQTFRNELYDGYKTGRTAPPEEMIPQFDLAKEVA
                     AGFGFVNLGVPGFEADDCIGTITVQASNTIATTVLSGDKDLLQLIAPTNDVWIMQKGY
                     GNYKRYDEATFFEEMGISPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIE
                     GVLNNLDKLKPAQQTKIQEDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDAFAV
                     VEKYGLKTLTRDIE"
     gene            complement(10419..10688)
                     /gene="rpsN"
                     /locus_tag="U0280_000265"
     CDS             complement(10419..10688)
                     /gene="rpsN"
                     /locus_tag="U0280_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEM2270229.1"
                     /translation="MAKKSKVAKHERQQALVEKYAELRRTLKAEGRYDELRKLPRDSS
                     PSRLHNRCELTGRPHGYMRKFGMSRIRFRELAHQGQLPGVTKASW"
     gene            complement(10811..11869)
                     /gene="chiA"
                     /locus_tag="U0280_000266"
     CDS             complement(10811..11869)
                     /gene="chiA"
                     /locus_tag="U0280_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase ChiA"
                     /protein_id="HEM2270230.1"
                     /translation="MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQ
                     VLVGYWHSWKSSGNDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGI
                     NDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDI
                     DLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSL
                     ANYYDYIAPQLYNQGGDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIP
                     ANKFVFGLPANVDAAATGYVKDPQIVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAG
                     VPYSNGFSNAYGPIVGTK"
     gene            complement(12061..13368)
                     /locus_tag="U0280_000267"
     CDS             complement(12061..13368)
                     /locus_tag="U0280_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HEM2270231.1"
                     /translation="MLGKGKIAALGFQHVLAMYAGAVIVPLLIGGALGFNGEEMTYLV
                     SIDIFMCGIATLLQLTVNRFFGIGLPVVLGCAVQAIAPIILIGQDMGIGAIYGSIIVS
                     GLFVLLIAPFFSKVVRFFPPVVTGSVVTVIGLTLIPVAINNLAGGEGAKDFGSMYNLG
                     LGFGTLLLIILVYRFGQGFSKAIAVLIGLVGGSLFAALYKGISLGPVSEASWFHMPKP
                     FYFGTPTFEWPAIITMILIALVSMVESTGVYFALSDITERKLTQKDLTRGYRAEGLAI
                     MLGGVFNTFPYTAYSQNVGLVQLSGIKTRKVIYAAAGFLIVLGLIPKIGAVTTIIPTP
                     VLGGAMVAMFGMVVAQGIKMLGKVNFTSQENLLIIACAVGVGLGVTVVPDLFNAFPSF
                     VRLFTSNGIVAGSVTAITLNIIFNMIPHRKDKKVADPEPQHAK"
     gene            complement(13375..13953)
                     /locus_tag="U0280_000268"
     CDS             complement(13375..13953)
                     /locus_tag="U0280_000268"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HEM2270232.1"
                     /translation="MKLLEEFIQEKGTVLPGNVLKVDAFLNHQIDPVLMQAMGNEFAK
                     RFQDLGITKIVTIESSGIAPAVFAGLALSVPVVFARKKKSVTLTDNLFTSTVYSYTKK
                     ESNDISVSKQFLTADDTILVIDDFLANGQAALGLLEIAEHAGAKVAGIGIVIEKSFQQ
                     GRELLNKTGIPVYSLARIASLENEEILFLEEE"
     regulatory      complement(14035..14135)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            complement(14181..15689)
                     /locus_tag="U0280_000269"
     CDS             complement(14181..15689)
                     /locus_tag="U0280_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HEM2270233.1"
                     /translation="MVETLEEEFLAYIKKMEALEEALALVYWDLRTGAPSKGMEGRSD
                     VIGVLSEEIFNMQTSEEMAAFIAGLNLDKENLSEITLKTLEESQKKYDLNKKIPSKEY
                     AEYTKLVAQAETAWTTAREQNDFAAFEPFLTKILEMKRKFVEYWGYEENKYDTLLDQY
                     EPGVTVSVLDSVFEKVRDGIMAIREKIANEGVKPDATILNTKISEAKQKEFSIRILNK
                     MGFDFEAGRLDETVHPFATGLNTGDVRITTRYNENDFKMAVFGTIHEGGHAIYEQNFD
                     AALVGTPLANGASMGIHESQSLFYEIIIGSSLAFWKSNYADFQAITKPAFDHVTLEDF
                     YRAVNISESSLIRIEADTLTYPLHIMIRYELEKALINGELEVKDLPKAWGDKYEEYLG
                     IRPDNDTNGVLQDIHWAGGDFGYFPSYALGLMYAAQFFNQMQKEIPNIDAIIASDDYS
                     ELKTWLTEHVHKFGKTKKPLEILTDTTGEGLNPTYLLDLLEKRYAYVYQFNK"
     gene            complement(15709..16857)
                     /locus_tag="U0280_000270"
     CDS             complement(15709..16857)
                     /locus_tag="U0280_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEM2270234.1"
                     /translation="MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSA
                     IARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKST
                     LYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL
                     HKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPG
                     FNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG
                     LGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS
                     VYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED"
     gene            complement(17019..17400)
                     /gene="rnpB"
                     /locus_tag="U0280_000271"
     ncRNA           complement(17019..17400)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="U0280_000271"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            complement(17437..17778)
                     /gene="gpsB"
                     /locus_tag="U0280_000272"
     CDS             complement(17437..17778)
                     /gene="gpsB"
                     /locus_tag="U0280_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HEM2270235.1"
                     /translation="MTSEQFEYHLTGKEILEKEFKTGLRGYSPEDVDEFLDMVIKDYS
                     TFTQEIEALQAENIRLVQELDNAPLRTSTQPAPTFQAAAQPAGTTNFDILKRLSNLEK
                     HVFGNKLDDNE"
     gene            complement(17910..18455)
                     /locus_tag="U0280_000273"
     CDS             complement(17910..18455)
                     /locus_tag="U0280_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HEM2270236.1"
                     /translation="MKSIAVTGYKNFELGIFKKDADEAVYIKETIKRHLLPLVEDGLE
                     WVIISGQLGIELWAGDVVAELKADYPIKLAILEPFEKQSANWNEANQLWASEVLEKAD
                     YHAFITKRPYESPAQFAARDGFIIDNTDGALLVYDLEKEGSPKFFYDRAIQAKEQSNY
                     YIDCIDFYALQEVVEDMNQTF"
     gene            complement(18452..18817)
                     /locus_tag="U0280_000274"
     CDS             complement(18452..18817)
                     /locus_tag="U0280_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YppE family protein"
                     /protein_id="HEM2270237.1"
                     /translation="MELLNRTEKLLLQNEKNWELYLSNREEAKPFDFYKDMKPFVDEA
                     KNSADAFLELAIPWVNKERPPYLGELQLRQACDNVQMTAVSAFNGKSFYKHFLDHYQS
                     TKYTLTRVRDFLKRKEELM"
     gene            19064..19669
                     /gene="recU"
                     /locus_tag="U0280_000275"
     CDS             19064..19669
                     /gene="recU"
                     /locus_tag="U0280_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HEM2270238.1"
                     /translation="MAIGYPNGKKYAASHEVLPQQKRKAPVTYGKRGMSLEDDLNDTI
                     AYYLTHEIAVIHKKPTPVQIVSVDYPKRSSAKIKEAYFKTPSTTDYNGVYKGKYVDFE
                     AKETQNTTSFPLSNFHDHQMTHMANVLKQDGIVFVIIAFQKLGETHFIPFEKFYPFWE
                     RMQSGGRKSVTIAEIQDVSDQIPYGLNPRLDFLQSIDKLYF"
     gene            19701..22184
                     /locus_tag="U0280_000276"
     CDS             19701..22184
                     /locus_tag="U0280_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEM2270239.1"
                     /translation="MADKPQTRSQYRNKQSGGSKKKSQKRGKRVVANIFKTIFFVGLF
                     LAFFGIAAGATVFYDYAKDAPKLTDSKLRDPLSSKLLDKDGKVFAEVGTERREYIEYK
                     DIPETLKNAILTTEDARFYEHDGIDPIRLGGAVIANLTDGFGAEGASTLSQQIIKMSY
                     LDYTNKTLARKAQEAWLALQLEEKYSKNDILEIYVNKVYMSDRVHGMQTASEHYFGKN
                     LKDLTLAQTALLAGMPQSPNNYNPYEHPEAAKKRRDQVLTNMYTHDKITKEEMTEAQK
                     TSITTGLRSKKDREDKIYKYDSYVTQVLSEIPKEYDVYRDGLTIHTALDRDAQEYTEK
                     MLNTNEIVNFTDDEMQAGIVLQDTKTGRVQAIGGGRKQKVTRGYNYATQVKRSVGSTM
                     KPIADYGPAFEYLDWSTAHILEDEPYTYSGGTPINNWDFAYKGPISVRQALYQSRNIP
                     ALKTLQAVGLDKSEEFVNKLGITYDEGQNVESNAIGANSSNPMQMAGAYAAFGNKGIY
                     NKPHTVTKIVLSDGQTEIDTEPQSTVAMKESTAYMVSDVLKDVLSIGTGTSAAVPGVP
                     AAGKTGTTNIPPEFTSKYYYPSGAARDSWFAGYTTNYSIAVWTGYDDKKKYVSASEQK
                     IAQRMFSKLMAHASAGKTTADFKMPSNVVSVPILKGSNPIARAAAGTASDKVSYELFL
                     SGTAPTKTASTPEDEKKKAEEAAKKKKAEEDKKKTDEEKKKEEEAKKKAEEEAKKKAE
                     EEAKNLTAPAGLRASYNAGSKQINVSWSAVDGATYEVTVNGSTTTVSSTSVSVSGGNP
                     GDTVSINVVAVKDGNRSPASSTTVKIPDS"
     gene            complement(22227..22718)
                     /locus_tag="U0280_000277"
     CDS             complement(22227..22718)
                     /locus_tag="U0280_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270240.1"
                     /translation="MAEFKYAVELTHPDFPAPDVILEEYDPESIYVSGLPFWQEQQFF
                     TKGGGVIPWKNETERACRKLAKHMTNLAESMEADLKVHKKPSPVTVRDALGIFLSILF
                     WSNHRPVQLDNLMDQIKTLETKPLNLDERLEYVLKRGNTYLGFRQLNELMLEQRKLIA
                     KRS"
     gene            complement(22711..23370)
                     /gene="nth"
                     /locus_tag="U0280_000278"
     CDS             complement(22711..23370)
                     /gene="nth"
                     /locus_tag="U0280_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEM2270241.1"
                     /translation="MLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCT
                     DVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILIEFN
                     GEVPKTHAELESLPGVGRKTANVVLSVGFGIPAIAVDTHVERISKRLGICRWKDSVVE
                     VEETLKRKLPKELWSDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFD
                     G"
     gene            complement(23381..24100)
                     /locus_tag="U0280_000279"
     CDS             complement(23381..24100)
                     /locus_tag="U0280_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HEM2270242.1"
                     /translation="MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEVELVLLLQIQSF
                     AAEAEFFPSMEMLTNRTTLPLEETIKTMDSLLKKGVIAIEQSQDNSRMISEQYNLAPL
                     WGKLVALYENKEADSKHEKELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTSP
                     DLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQ
                     TEVKKSAGSIPLYDWLEKRKG"
     gene            complement(24250..25542)
                     /gene="asnS"
                     /locus_tag="U0280_000280"
     CDS             complement(24250..25542)
                     /gene="asnS"
                     /locus_tag="U0280_000280"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEM2270243.1"
                     /translation="MKITINQASEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQ
                     GVVVKAEVGDDIFATAKALTQETSLYVTGTINEDTRSPFGYEMAVSGVEVISESHDYP
                     ITPKEHGTEFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGS
                     APEGTTELFHTKYFDEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIE
                     FWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDVSHLEKMVAPFPR
                     ITYTEAIERLHELGFDDIVWGDDFGAPHETAIADSFEKPVFITHYPKAIKPFYMPEDP
                     ENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGS
                     VPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP"
     gene            complement(25556..26737)
                     /locus_tag="U0280_000281"
     CDS             complement(25556..26737)
                     /locus_tag="U0280_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2270244.1"
                     /translation="MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDF
                     NTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLQKDQFLNYETNQIFVGTGAK
                     HVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAANFEK
                     AITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADL
                     VSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTAN
                     AQYAALEAYVGSQEVPEKMYKAFEERMERFYPELSSIPGFKPKKPDGAFYFFIEVKEA
                     AHKKGFQDVDAFVAALLEEAKVAVIPGSGFGMPDYIRLSYATNPDLFQEAINRIKSFM
                     K"
     gene            complement(26760..27344)
                     /locus_tag="U0280_000282"
     CDS             complement(26760..27344)
                     /locus_tag="U0280_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5590 domain-containing protein"
                     /protein_id="HEM2270245.1"
                     /translation="MYLCENENAYRRRNSGNLEIEMSEIILRNRKPKRKIGKWIAIIL
                     GIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLT
                     GKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKNPKKILHVNLGMEKE
                     TPIWEVAYLDKNDKLNYFDINFETGEWYREIENL"
     gene            complement(27389..30175)
                     /gene="dinG"
                     /locus_tag="U0280_000283"
     CDS             complement(27389..30175)
                     /gene="dinG"
                     /locus_tag="U0280_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HEM2270246.1"
                     /translation="MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTF
                     LNPEKPIPAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLER
                     EMTRAGISLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTA
                     DLLLLLLEKLENLPLPVIRQMTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHR
                     GLVIRKKEVEKPTYSRADLLEFPETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMK
                     SGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQAQLFEKDVPLLTKL
                     TGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLLVWLTETTTGDIDEVN
                     LSSGGELFWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFS
                     GRETLPKYAFAVIDEAHHFADSARMQGSFVLSYRKIKYFLNQLGSLEKYSLLTRLAMA
                     FPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDAWNDKVY
                     YAAEKVLHLLKESEKNMETLLEQGKQEENELGEAESAFLEEMYAFLLDWKNMVKQLEQ
                     MLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVK
                     GKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPDDMPPIKDTPIERYTLELAKY
                     IRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTKQFQ
                     MFDKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQ
                     TYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQ
                     ADLLEEVSEFFKEG"
     gene            complement(30272..30655)
                     /locus_tag="U0280_000284"
     CDS             complement(30272..30655)
                     /locus_tag="U0280_000284"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEM2270247.1"
                     /translation="MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKV
                     QIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTTEEAKTHE
                     PKIVVLDEKNHIEMILPEEKAHTTL"
     gene            complement(30659..31516)
                     /locus_tag="U0280_000285"
     CDS             complement(30659..31516)
                     /locus_tag="U0280_000285"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEM2270248.1"
                     /translation="MLIIRNKQDLKEAILEQKKANKTIGYVPTMGFLHEGHMTLVSHA
                     RKETDFVVMSVFVNPTQFGPNEDFDAYPRDEAHDAKLAEEGGVDILFVPTVEEIYPTE
                     LATKLHVIKRVSVLDGADREGHFDGVVTVLTKLFHLVNPDNAYFGQKDAQQVAVVSGL
                     VEDYFFPINLRIIATVREADGLAKSSRNVYLTEKERKEAPVIHEALQLGRELIESGET
                     NEAKIVQVMTDKINEQPSHENIAYLALYSYPEFTPVTDWTKGIIIAAAVKYSKARLID
                     NELINVKRR"
     gene            complement(31520..32353)
                     /gene="panB"
                     /locus_tag="U0280_000286"
     CDS             complement(31520..32353)
                     /gene="panB"
                     /locus_tag="U0280_000286"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEM2270249.1"
                     /translation="MKRPVDFFAMKENGEKITMITAYDYPSAKNVEQAEADMILVGDS
                     LGMVVLGYDSTVPVTMDDMIHHTKAVKRGAPDTFVVTDMPFMTYHGSVDETIQNARKI
                     IQESGAHAVKLEGAGEVVNKIARLTEAGAPVVAHLGLTPQSVGLTGSYKVRAKSAQEA
                     QELMDNALAVEAAGAIALVLEAIPRQLAEKVSKALSIPTIGIGAGVETDGQVLVYHDI
                     IGYGISRRAKFVKAYADIDERIEPALASYVKEVKAATFPEVKHSFTMAEEDLKGLYGR
                     E"
     gene            complement(32520..32993)
                     /locus_tag="U0280_000287"
     CDS             complement(32520..32993)
                     /locus_tag="U0280_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2270250.1"
                     /translation="MKKILLLLTSITVILTLGACGDNKKETEEKANQTEKESASFLTT
                     ISTKDFKQKMADKTTGFVYVGRPTCEDCQAFQPMLKKELKKRQPDQKMAYYNTDKASE
                     KSRDDMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE"
BASE COUNT         9542 a         7188 c         5666 g        10659 t
ORIGIN      
        1 tatttactgt ataactataa taacatattc acaatcatac tgtactatgc agctagcatt
       61 atttagaact caaagcatat taaaaagcag ccaaaatata tcagctgctt tgtagtttac
      121 atctttaatt ctgctttact cgcgaaaaat cctgctaaac gatttttcac ttttcggatg
      181 ccgccagctt catcactttc taaattcatc ggcattaccg gttcatgtaa gctcattcgt
      241 agtaagaacc agccttcacc aagcgcacct ttcgtattca cacgaattcc ttcttggttc
      301 acaggttcta attccatatc cggatcagct tctacgaaag tcagaaaatc agctagaact
      361 tcttttccat aagctttaaa atcggttgcg gtaatactca aacgaatttc ttcgctttca
      421 gccggttctc ttaaatcggc tattaaatct ggcaaatctt ttccattttt tcgtaaagtg
      481 gcataagtca ttaaaatttt ggcaatgaga tatgcgccat catccaagaa ataattttct
      541 tttaatgcgg catgaccact tacttcgata gcaatttctg atggtgttcc gtctgcattt
      601 aggcgcagtg cttcattgat aacattacga taaccacgtt taaatcggtg ttgtttcccg
      661 ccttttgctt cgataaaggt ttgcaaatgc ccagatgttg tggagtcagt cacgatagtt
      721 gttcctggtt tttcttctaa aataatacta gagataacag caattaatgg gttgcggttt
      781 aaactttcgc catttttatc cataatcgca gcacggtcta catccgtatc aaaaatcacg
      841 cctaaatccg ctccactagc aaggaccgct tttttcaaac tagccatagc ttcctcattg
      901 tcagggttcg gaatatgatt aggaaaattt ccatccggat ctaaaaactg gcttccagaa
      961 atgtctgcgc caagttctgc caatactttc tcagcaaaaa agccgccagc gccgttccct
     1021 gcatcgacaa taatatggct tcctagaagt ggcttcattt tgtcagctgc atctgtgatt
     1081 ccagctctaa ttttatccgt taagtctgct gcatatgtag aaagtaaatc ttgttttgtt
     1141 accttcccaa gatttagtcc attttctatg aatgatttat ctgcgtgagc cacgatataa
     1201 tcaatatctt cgtgttcagc tccaccagat ttcgtaaata attttagtcc attatacata
     1261 aaaggtaagt ggctcgctgt aatcataatg ccggcatcgc agtcatagtc ttcgtactga
     1321 gttgccataa acatggccgg cgtagttgca agccctacat ccaccacatt gattcctgca
     1381 aaagttaacc ctttgacaag tgccgctttt aaacgttcag ctgaaagtct gctatcatgg
     1441 ccaattgcca ctttcgcttg accttccact tttttctcct cttttagcca tttcgcaaag
     1501 ccataagcaa tcttttctac acgttcgtct gttagcgtaa tctgatattt ttccgtagca
     1561 atagctattc cacgtatgtc tgatccgttt tgcagtgctt ctaacgcttt cgtttctgat
     1621 tgattcatgt cattcctcca gcttctgtat ttttcccctt cattatagct taaattgcga
     1681 aattttcaca tagcttttac aaaagatgtg ctctattcgc gataataatt tgcaagtcaa
     1741 cggttaattc ttccggtggg tttcccagta attcgctttt tttatccgct tcaatatgcc
     1801 aaccaagtgg cgtcatttca agaaaatctg caaataattc tttggcaatc ggcgctttgt
     1861 aggtcactcg ttcgacatgt tctacgctta acttttctgc taatcgtgat gtgaccgact
     1921 cattcgaata actacttttc tcatcaacat aaataaattc acgtaattcg cgtaaataat
     1981 tcgcttctgg cactactttt aacaaaaacc catccttctt taaaagccgt ttgaactcca
     2041 cgtaattcga tggcgataaa atatttaaaa tgacatccgc cgtctctgct tgattcgggc
     2101 aattggctaa atcagctacc gtccaagaag taccaggata gtcgcgtgcc gcttgtttca
     2161 ctccctcttt ggcgatatct aagccaaccg cttggacatt aacaccagtc gcttgtaaat
     2221 ttgatacgac tcgcgccaaa tgacttcctt ccccgcaacc cgcatcatat aaaacaagtt
     2281 gttctttttt cttctccgca ataatttctg tcactcgttc gattaatttt tcaaaaaagc
     2341 cactcgcaat cactttttta cgggattcga ataatgcttg atcgtatttt gttttatgcg
     2401 cttgttttag taaatgtacg taacctggtt tggcgatatc aaacccgtga ccttctaggc
     2461 atacaaatga ctgcggctct ttaaactcga atgcttcgcc acaaatcgga caagcaagaa
     2521 gcgccatatt ttctttcaaa gcgcgtttat ttatctccat ttttgataac aattaatact
     2581 cactccactc gaaaaacgtt gcccgcaaac aggcaacgtt tctactaatt tctttcatac
     2641 gtataaaaag tgtaattgta cttatttttt tcatcttttt catggaattc tttcgccact
     2701 tcggaaaaat tctcccaatc cacttcagga aacgcagtat cagcctcaaa ctctgcatca
     2761 atttttgtca caatcagctg atccgccaca tccataaata aacgatagat ttctgcacca
     2821 ccaactatat agattggttc ccccgtctca gcaagggcta aaacagcttc ttttgaatga
     2881 agtatctctg catcatctaa cttgagacct tgatctcgtg tcaatacgat tgtctttcta
     2941 tttggtaaag cttttcctaa cgattcatag gtttttcgcc ccatgacaag tgttttccca
     3001 gtcgtcgttt ttttgaaaaa ctgcaaatct cccggtaagt gccacggcat tttgttatct
     3061 tttccaatat taccagcgcg gtcttgtgcc caaacaaaaa taatcatcca agaaaacctc
     3121 ccttatactg aaattggtgc tttaattgct ggatctggat tataaccatc cagtgaaata
     3181 tccgctacat caaaatcaaa aatcgttgct ggtttatctg aaagcactaa ttttggaagt
     3241 ttgtgcggtg ttctagacag ctgttctttc acttgctcaa tatgattgtt ataaagatgc
     3301 gcatcaccca tagtatggat aaactcgcca acttccagcc ctacttcacg tgcaatcagg
     3361 tgtgttagaa gtgcatagct tgcaatatta aacggtacac caaggaaaat atcggcacta
     3421 cgttgataca gctgacatga taattttccg tccgctacat aaaattggaa tagcgaatga
     3481 catggcggta aagccatatt cggaatatct tctggattcc aagcagacac aatcaaacga
     3541 cgcgagttcg gattcgtttt aatcatttca atcaaatccg ctaactgatc aattgtttct
     3601 ccttgtgaag tcttccattc gcgccattgt ttaccgtaaa tattacctag ctcaccgtat
     3661 ttattcgcga acgcttcgtc ttctaaaatc cgagctttaa acttctccat ctccgcttga
     3721 tacacttctt tgaaagctga atcacgctca gcacgcagtc caaagtcagt catatcttcg
     3781 cctttataat catcgctttt cacaaaacgc tcaaaagccc attcattcca aatattatta
     3841 ttatgctgta aaaggtagcg aatattcgta tctccatgta aaaaccatag cagttcactt
     3901 actacaagtt taaatggtac ccgttttgtt gtcataatcg gaaagccctc ttgtaaatca
     3961 aaacgcattt gataaccaaa tgtgctgatt gttccagttc cagtgcgatc tcctttttgt
     4021 gttccattct ctaaaacgta cttttctaaa tccaaatatt gtttcatcgt tcgcactcct
     4081 tattccgcgt attgtgataa aaattcccag cgttccatca tttgttcgag ctccgtttct
     4141 tttgccgtga tgagttcgct aatttctgct gcttttgtaa agtctgctcc ggtttgttcc
     4201 aatgtttcat taagcgattc aatggtttgt tctaattcac taatggcatc ttcaattccg
     4261 tcccactcga gttgttcttg gtaggtgagt ttaactttct cttttttctc aggtgctgcc
     4321 ttttcgaccg aagtattcgc catttttttc attgatttcg ctggttttgc tttagcctcc
     4381 agctctttca aataatcact atattcaccg tagaaaattt ctacttcacc aattgctcgg
     4441 aaaacgagca atttgtttac gactttatcg aggaaatatc tatcatggct aaccgtaatt
     4501 acggtaccat tgaatgattc taaatagtct tctaatacgg ttaatgtttg cgtatctaag
     4561 tcattagtcg gctcatccag taataagaca tttggtcgtt ccatcaaaat gcgaagtaag
     4621 aataaccgtc gtttttctcc acctgataag ctaccaattt tcttcccgtg ggaatttggt
     4681 gggaataaaa atcgttctaa catcgcactc acactgatta cttcgccacc agaagttgtg
     4741 acttgctctc ccgcttcttg caaataagca atcattcgca tatccgggtc catttcttca
     4801 ttttgttgcg tatagtaacc gatttgtacg gtttgacctg tgactacttc cccagcatct
     4861 ggtgctagtt ttccagccaa catgttcagt aaagtcgatt ttccagttcc gttgttccct
     4921 gtaataccaa ggcgttcacc aggttggata atcaagctga aatcctgcaa tacttgtttt
     4981 tcatcaaagc gtttttccaa gtttttcagt tcgaaaacat cttttccaag acgactagta
     5041 acaaaatcaa tcgccagttc tgagtcatcg gtttttgttt tcactttttt ctctaaatcg
     5101 tggaaacggt cttgtctggc attttgttta gtggcgcgac cttgaggacc gcgacgcatc
     5161 catgctagtt ccttacgata aaggttttta tttttctcag attcacggac ttcgttttcc
     5221 atccgaatgg ctttagattc catgaatttc tcgtagttcc caacgtatcg ataagccgaa
     5281 ccccggtcga gctccaccat gtgatttgtc actcggtcaa gaaaataacg atcatgggta
     5341 acaagcaaga cagccccttt aaagcgattt aaatattctt ccaaccaacg aattgactga
     5401 aaatccaagt ggttggtagg ctcgtccaaa atgagtaaat ctggcgtctc gattaagact
     5461 tgcgccaaac ctacccgttt tcgttgccca ccagaaagct cgcttatttt cgcggttaaa
     5521 tctgtaattc ctaaacgctc caaaatcgtt ttcgcttctg tgttcatatc ccaagccgca
     5581 ctagcatcca tttcttggct ggcggctgta taagcatcgt gtaatttggt attttccgca
     5641 tcaagtgaca tcgcaagtaa cacttcttcg tacttgcgca ttgcccgaag cgccgcagta
     5701 tccccgtcaa aaacagccga aagaactgta tcttcttcat taaattcagg atcttgcgcc
     5761 aaataaccaa tcgtataatc ttttgctttc gtaacagtac ctttatcccc agattcacta
     5821 ccagaaataa tttgcaataa cgtcgatttc ccggtaccat ttacaccgat taaaccaata
     5881 cgttcgccct ctgttatcgt tagcgagata ttttcaaaca ggctttttcc accatatgtt
     5941 tttgttaaat tttccacttt taattgtttc atttagtccc atccatttcc tgttcgtcct
     6001 tatctattct agctgaaaac atagaacata gcaattgctt aagatgaaaa aagttccaaa
     6061 agcggctctt ccacttttgg aacttttact tttaaaataa accttgtgca ttcccatttt
     6121 catcgacatc catattaagt gccgctggtt ttttcggtaa acctggcatc gtcattacat
     6181 cgcctgttaa agcaacgaca aaaccagcac caagttttgg aatgaattcg cgaatatgaa
     6241 taacaaaatc agttgggcgt ccaagtaatg ttgggtcatc cgataaggaa tattgggttt
     6301 tcgccataca aatcggataa cgatcccaac catatttttt gaattcaacg atttgtttct
     6361 gcgccttgct ggaaagttcc acaccaatac cgccgtatac tttcgtcaca atcgcttcta
     6421 gtttttcttc catcgaccac gcatcatcat aaatgcgttt gtagtccgct tctccacttt
     6481 caacagccgc aatgacttta tccgcgagtt caaggccacc gtcgccgcct ttttcccaaa
     6541 cttctgtcag agagaaagga atcccgtgtt ctttgcagag cgcttctaat ttcgctactt
     6601 ctgcgtcaga atcggtaatg aatttgttaa tggctacgac ataaggaata ccaaatgttt
     6661 gaatagattc ggtatgtttt tgtaaattcg taaaaccttt agctagcgca tccacatttt
     6721 cttcgctaag ctcggttttc aaagcgccac cgtgcatttt cagtgcgcga atcgttgcta
     6781 caataacaac gcaatctggc gcttttccaa gggcaggaac tttaatatct aaaaatttct
     6841 cggcaccaag gtctgcacca aatccagcct ctgtcactac atactcacct agtcgaagtg
     6901 ctgtgcttgt cgcagaaaca ctattacatc cgtgagcaat attcgcaaaa ggtccaccat
     6961 gtacaatggc gggtgtatgt tctaatgttt gcaccaaatt aggttttaaa gcatctttta
     7021 atagtaaggt tagagcgcct tcgtagccca tttcgccaac tgtaattggt tcttttttat
     7081 agttataacc gatcacgatt tcacttaaac gtttctttaa atcttttaaa tcacttgcta
     7141 aacaaatgat cgccataatt tcagaagcaa ccgtaatatc aaaaccgtct tcacgtggaa
     7201 ccccttgaat aggacctcca agaccaacaa ccacttttcg aagtgcacgg tcgttcaaat
     7261 caactacacg tttccaaacg attcttctac cgtcaatatc taggtcattc ccttgttgca
     7321 tatggttatc aataaatgcc gataaagcat tgtttgctgc tgtaatcgcg tgaaaatcac
     7381 cagtaaaatg taaattaata tcttccattg gaataacctg cgcgtatccg ccacctgttg
     7441 ccccgccctt aatacccatg gtaggtccga gcgatggttc gcgaagtgca ataacggttt
     7501 tcttatcttt tttagagagt gcgtcgccaa gaccaactgt cactgtcgat ttcccttcac
     7561 cagcaggcgt tgggttaatc gccgtaacaa gaacaagttt tcctggttct ttatctttta
     7621 gcgagtgaat ggtatcatag gataactttg ctttatactt tccgtaaagt tcgagtgcat
     7681 ctgcgtctag tcctaaatgt tccgcaatag tcgtaactgg tagaatttct gcttttgatg
     7741 caatttcaat atctgatttc actttatttg acatgatatc ccctccgaat atgtatattg
     7801 taacaaagaa ttaagatgtt ttggcttctt tagtgcatca aaaaagcgcg acaccaagcg
     7861 atgtaacacc attttgattc taaagtaaag cctgattgcg caaaaatcaa catctcaacc
     7921 ttggattacc gttattcctt tgtttctggt ttggtcgtct ccatcgcctt gagcgtcttc
     7981 agtgcatccg gatgattttc aaaaaactga acaacatctc caattcggtc aatcgagttc
     8041 cagctcaagt ggtgttcaat accttccaca tcatgataaa tatgggacgg atctacgcca
     8101 ataatactta aaaaactctc taataatgca tgtctttcta ggagcctttt ccccatttgt
     8161 gttcctttag gcgtcaaaat taatccacga tatttctcat agattaaata ttcgtcttta
     8221 tccagtttct gcaccatttt tgttacagag gaaggatgga caaatagctc atcagcaata
     8281 tccgaaaccc tggcataacc tttcgtctca ataagggaat agattttttc aatataatct
     8341 tccatactag gtgttggcat agctataccc tccaacttaa attctttcac atagccaatt
     8401 gtactataat atcgcccttt ctaaaagcaa ttaccctttc gaaaacgaaa tttctcctag
     8461 agcggtcttc cgaaaaaaaa ccgtaattag taccaattta agacatttaa gtcaaaagta
     8521 tgcccttaca agtccaaaaa tttaaaaaat atcgaaaatc agcttgacgt ttataggtat
     8581 tttgatttat agtgttagta tcatatgcgg caacgctatg aactgaaaag gtagtatttg
     8641 cgagaaattt ttttaagtta aaatgaaagc gttttaacaa atgattctag caattattag
     8701 ccatacttag gaggatttat ttcaatgcaa aatgggaaag taaaatggtt taacaatgaa
     8761 aagggttacg gttttatcga atcagacggc ggcgaagata ttttcgttca cttcacagcg
     8821 atccaaggtg atggctacaa atctttagaa gaaggccaag cggtaacatt tgaagtagta
     8881 gaaggtaatc gcggcgctca agcagccaat gtagaaaaag cctaatccag ttgccaaata
     8941 gacacggact taaaaccggt atccttttac cggttttttt attgcaaaaa aatagctttc
     9001 cttctataat aaagccacat ctattcatct aaataggagg cacataatat ggaagttttc
     9061 gtcgatggtg caagtgctgg aaatcctgga ccaagtgggg ctggaatcgt cttaaaagca
     9121 gaaggtattt atgaacaatt cgccattccg ctcgcagtta tgacgaatca tgaagcagaa
     9181 tttattgcga ttaaactcgg actggaagaa gccataaaaa aacaagctac attaattcgt
     9241 ctatactcag attcgaaagt tgcaatcgaa gcaattcata aacgacatgc gaaaaatcct
     9301 ttattcaagc cgcatttaga agcaatttta gaaatggccg attcatttga attgtttttt
     9361 gctgaatggc gtaatgtaag tcaaaataaa caagccgacc aacttgcgcg ccaggctata
     9421 aaaaaacaga agcaacctgg agtcaaataa ccagattgct tctgtttttt attcgatatc
     9481 gcgcgttaac gtttttaaac cgtatttttc aactacagca aaagcatcct cgcggaaacc
     9541 gtcatatttc aagctaggca agtctatttc tagtgggact tctgtatgaa tccgagctaa
     9601 tttttgactt aattctagca tcgctaagtc ttcttggatt ttggtttgtt gcgctggttt
     9661 cagtttatca aggttgttca agacgccttc aatagactca aattcttgaa taagcttaat
     9721 cgctgttttt tcaccgattc cacgaacacc cggataacca tctgaagtat cgcccattaa
     9781 tgctttcaca tcaataaatt gtcttggaga aatacccatc tcttcaaaaa atgtcgcttc
     9841 atcatatcgt ttataattgc cataaccttt ttgcataatc cagacatcat tcgtcggtgc
     9901 gattagttgc agtaaatctt tgtcgccact taaaacagtt gtagcaatcg tattactcgc
     9961 ttgaacggta attgtcccaa tacaatcatc tgcttcaaaa cccggcacac ctaaattgac
    10021 aaagccaaat ccagcagcta cctctttcgc taaatcaaac tgcggaatca tttcttctgg
    10081 tggcgctgtt ctgcctgttt tataaccatc atataattca tttcgaaatg tttgcgaccc
    10141 catatcccag caaattagtg tatgcgttgg gttactctgg cgaatcgctg caaacatgtg
    10201 gcgcataaaa ccttgcaccc cattcgtcgg gattccatgt tggttaaaca taaattgttt
    10261 ggaaacggct gttgcataaa atgctcggaa aagtagtgcc attccatcaa caacgagcaa
    10321 attttctcga ttttcggtca tatataatcc tccaatttcc ttctactgcc atctattgta
    10381 gcataattat aactggctcg cagaaaaaaa ggagcttttt accagcttgc ttttgtcacg
    10441 ccgggtaatt gtccttgatg tgctagttca cgaaaacgaa tccgcgacat accaaattta
    10501 cgcatgtagc cgtggggacg tccagttagt tcacaacgat tgtgtagccg ggacggggaa
    10561 gaatcgcgtg gtaatttgcg taattcatcg tagcggcctt ctgcttttag cgttcggcga
    10621 agttccgcat atttttccac gagcgcttgt tgacgttcat gtttggcaac ttttgatttt
    10681 ttagccatgt gtctctcctt tcttaaataa taatcattac gatttacatc atacgccgat
    10741 ttaattagga aagcaagtct tctgttttaa aaaaaccgat atccagttaa actgaatatc
    10801 ggttgtccta ttatttagtt ccaactatcg gaccatacgc gttagagaaa ccattactat
    10861 aaggcactcc tgctttattt ttacctgcat cccagttcac cgaccaagtc ataatccctt
    10921 tcactggtgt gccttttgct tgtaaacgag tgaaaacatt tttgacgatt tgcggatctt
    10981 ttacataacc agttgcggct gcatccacat tggctggtaa accgaacacg aatttattag
    11041 ctgggatttt caagtaacca cgagtcccat taataaagga gtccgccata taatataaga
    11101 aagattcttt taatgtatca ttattttgcg caatccattg gtttgtttca tcaacccaaa
    11161 caccatcgcc accttgattg tatagttgtg gcgcaatata gtcataataa ttagcaagtg
    11221 aggttaggta gctttcatag gcactacctg gttttaaata aggaaattct ggtgccatcg
    11281 taattaggaa atttttccct tccgctttat aatgatcttt aacgattttt agcgctgctg
    11341 ggataaccgt tttattatct cccgcggtaa tcgcactttg ttctaagtcg atgtctaatc
    11401 catcaaagcc atatgtttct acttggcgga taatttcatt cgcgaacgcc tcttcatccc
    11461 cagcttttag ttccacgtgt ccatctgctc cacctagtgc caaaagaacg gcccgacctt
    11521 ctttatttaa tgcgccgact tgcgccctga aatcgctatc atttattccc actggtttaa
    11581 atgtcggaat gcgatttacc ccgtcccctt tcataaagga aacatctacc acgttataag
    11641 ctttcggtgt atcttttagg gcgatatcag ccgaagtccc ttgttgatag ccatcatttc
    11701 cggaagattt ccaactatgc cagtacccaa ctagcacctg tttgttagaa atatctggca
    11761 ttacagaagc gtcatccgtc gccgcttgtg ctgtactgcc aaatgccccc agtcccgcac
    11821 caactaaaag taaagacaaa ccaccaacca ttacttgttt tccattcatc tacttttccc
    11881 ccttacttta tctaccccaa gcttgctttt ttggagctac tagaaaatac ccatcataat
    11941 gaaaataaaa ctagaaaaac agcaaaaaag cgaaattgat atagaccaat ttcgctttca
    12001 aataaatgaa tgtgtataag taaccgagaa aaaatagccc aattaaaact gttttatttt
    12061 ttacttcgca tgttgtggtt ctggatctgc tactttttta tctttgcgat gtggaatcat
    12121 attgaaaatg atattcagtg taattgctgt cacactgccc gcaacaattc cattactcgt
    12181 aaataagcga acaaaggatg ggaaggcatt gaacaaatct ggtacgactg taacgcctaa
    12241 accaacacca actgcacacg caatgattaa caagttttct tgagaagtga aattaacttt
    12301 tccaagcatc ttaatccctt gtgcgacaac catgccgaac atcgcgacca tagcgccgcc
    12361 gagaactggt gtcggaataa tcgttgtcac tgcgccaatt tttggaatca gaccaagaac
    12421 aataaggaaa ccagctgccg cataaatcac tttacgtgtt ttaataccag aaagttgaac
    12481 gagtccaacg ttttgcgaat aagccgtata ggggaatgta ttaaatacgc cgccaagcat
    12541 aatcgcaagc ccttctgccc ggtaaccacg cgttaaatct ttttgcgtta atttgcgttc
    12601 ggtaatatca gataaagcga aatatactcc cgttgattcc accatgctga caagcgcaat
    12661 taaaatcatc gtaataattg ccggccactc aaaggtcggt gtgccaaaat aaaatggttt
    12721 tggcatatgg aaccaactcg cctcactcac aggaccaagc gagatccctt tataaagcgc
    12781 tgcaaaaagc gaaccaccaa ccagaccaat taaaacagca atcgccttcg aaaacccttg
    12841 tccaaaacga tacactaaaa taattaaaag taatgttcca aaaccaaggc cgagattata
    12901 cattgagcca aaatcttttg ctccttctcc accagcaaga ttattaattg caacgggaat
    12961 aagtgttaaa ccaatcactg ttacaaccga accagtcaca acaggaggga aaaatcgtac
    13021 aactttggag aaaaatggtg ctattaataa tacaaaaagt cctgaaacaa taatcgaacc
    13081 gtaaatcgcg ccaatgccca tatcttgtcc aattaaaata atcggcgcaa tagcttgaac
    13141 cgcacatcca agtacaaccg gtaaaccaat tccaaagaag cggttaaccg ttaattgtag
    13201 caatgtcgca atcccgcaca taaaaatatc aatcgaaact aagtaagtca tttcttctcc
    13261 attaaaacct agtgctccac caattaatag tggaacgatt actgctcctg catacattgc
    13321 tagaacatgt tgaaatccta aagctgcaat tttcccttta cctaacattt actcctattc
    13381 ctcctctaaa aataagattt cttcgttttc aagtgaggca attcgtgcta gtgaataaac
    13441 tggaatccct gttttattta ataattcgcg accttgttgg aaagattttt caatcacaat
    13501 accaattccc gccacttttg ctccggcatg ttctgcaatt tcaagtaagc cgagtgccgc
    13561 ctgaccattt gctagaaaat catcaataac taaaatcgta tcatctgctg ttaaaaattg
    13621 ttttgataca gaaatatcat tcgattcttt tttagtatac gaatagacag tgcttgtgaa
    13681 taaattgtcc gttaatgtca ctgatttttt cttgcgggca aacacgactg gtacggaaag
    13741 cgcgagccct gcaaaaacgg cgggtgcgat acccgatgat tcaatcgtta caattttcgt
    13801 aatccctaaa tcttggaacc gtttagcaaa ttcatttccc atcgcttgca ttaaaaccgg
    13861 atcaatttga tgatttaaaa aagcatctac ttttaaaaca ttccccggta aaaccgtacc
    13921 tttttcttga ataaactctt ccagtaattt caaaacgatt ctcctttcaa aataaaaaaa
    13981 ctgcttctct aaaaatagag aagcagtata gaagccacca attttcggag tgacttcttt
    14041 atacaaacta ctcatagtcc ggttatttac ggtaaccagg tagaaactcg tcgcccaatc
    14101 gcaactatta tataagtatt tcggttttaa gttatgttgt ttattatagc tttctaaagg
    14161 agcagggtca agctaatttt ttacttattg aattggtaaa cataagcgta tcttttttct
    14221 agtaaatcta gcaaatacgt tggatttaag ccttctccag ttgtatctgt tagaatctcg
    14281 agaggtttct tcgttttacc aaatttatgc acatgttcag tcaaccacgt ttttaattcc
    14341 gaataatcat cgcttgcgat aatcgcatcg atattcggaa tttctttttg catttggtta
    14401 aagaactgcg ccgcgtacat taaacctaat gcataagacg ggaagtaacc aaaatcgcca
    14461 ccagcccagt gaatatcttg cagaacgcca tttgtatcat tatctggacg aatgccgaga
    14521 tattcttcgt atttgtcgcc ccatgctttc ggtaaatctt ttacttctaa ttcaccgtta
    14581 ataagtgctt tttcaagctc atagcgaatc ataatatgaa gcggataagt taatgtatca
    14641 gcttcaattc gaatcaacga actttcagag atgttcactg cgcggtaaaa atcttccaaa
    14701 gtcacatgat caaaagccgg ttttgtaatc gcttggaagt cagcataatt acttttccaa
    14761 aatgctaaac tagaaccgat aataatttca taaaataatg attgtgattc atgaatgccc
    14821 attgatgcgc cgtttgcaag tggagtacct acaagtgctg catcaaaatt ttgttcgtaa
    14881 atcgcatgac caccttcatg aatcgtacca aaaacagcca ttttaaaatc attttcattg
    14941 taacgggtcg taatacgaac atcgccagta tttaaaccag tcgcaaaagg atgcacggtt
    15001 tcatctaaac gacctgcttc aaagtcaaag cccattttat tcagaatgcg aatgctaaat
    15061 tctttttgtt ttgcttcgga tattttggta tttaaaatcg tcgcatctgg cttcacgcct
    15121 tcatttgcga ttttttcgcg aatcgccata attccgtcgc gtactttttc aaatacggaa
    15181 tcaagcacag atacggttac acctggctca tattgatcaa gtaatgtgtc atatttattt
    15241 tcttcataac cccaatattc aacaaattta cgcttcattt caaggatttt tgttaggaac
    15301 ggttcaaaag ctgcaaaatc attttgttcg cgagctgttg tccaagccgt ttctgcttgc
    15361 gctactagtt tagtatattc cgcgtattct ttacttggga tttttttgtt taaatcatat
    15421 tttttttgag attcttctaa agttttaaga gtgatttcag atagattttc tttatcaagg
    15481 ttaagtccag caataaaagc agccatttct tcagatgttt gcatattgaa aatctcttca
    15541 gatagaacgc caataacatc agagcgacct tccattcctt ttgacggggc gcctgtacga
    15601 agatcccaat aaactaatgc cagtgcttct tccagtgctt ccatcttttt aatatacgct
    15661 aaaaattcct cttctaatgt ttctaccaaa cttaactcct ccattcaatc aatcttcttt
    15721 tttaggacgt ggttttcttg gaccccagta ttgatataaa tctgtgcgca agtaaccatt
    15781 gtataatttc cgttttttcg tcgctttttt accataaact tcttcaaaaa gttcataaga
    15841 ggtaaggaca tatactgacc atgtcggcat gcgtttataa acaataccca tttcgcggta
    15901 aagttggcgc actgcttcct cgtcttctaa acgttccccg tatggtggat tcgcaacaac
    15961 gaccccgtac tcatcttctg tttgaaagtc agctacttgt agttgtctaa aggtaattaa
    16021 gtcaccaagg ccagcttcga ccgcattttg ctttgcgatt tcaattaaac gagcatcaat
    16081 atcgccacca ataatattta gcggttgatc atagttagct aaatcttccg cttcttgtct
    16141 cgcatccgcc caaacttgct tcggcatcca atcccatgtt tctgacacga actcgcggtt
    16201 aaaaccaggc gcaatatttt gcccaattag tgccgcctca attggaattg ttccagaacc
    16261 acaaacggga tcataaaatg gtctatctgg atgccaactc gtaagtagta caagtgccgc
    16321 cgccattgtt tctttgattg gcgcactacc ttgtgctaaa cggtaaccac gtttatgtaa
    16381 tcccgcacca ctagtatcaa ttgttagcgt cacttcatct tttaaaatag aaacttctaa
    16441 cttaaataac gcgcctgttt ccatcaaacg accagaacga cgatactttt cactgacacg
    16501 gttaacgatg gcttttttta caatcgcttg gcaatcaggc acactataaa gcgttgactt
    16561 aactgattta ccagccactg gaaactgtgc atcaagcggt aaataatctt cccaaggtaa
    16621 agctttcgtc ttttcaaata gttcatcaaa tgtcgttgct ttaaaaacac caaccacaat
    16681 tttcacacgg tcggctacac gaagccatag attggctcta gcaattgcag ataaatctcc
    16741 ttcaaaatat actttaccgt tttctacttt tgggtcatag cctaaacgcg ctacttcttt
    16801 cccaacaatt gcctctaaac ccgaagcagc cgttgccacc aactgaaatg atttcattgt
    16861 ttcccatcct ttaattaaat ttctaatgaa aaaagctgtt ttaagaggag gaggtttgtt
    16921 ttaaataggc attcaaccag gtcgaacacc caccttaaaa cttgcgctcc ggccttctaa
    16981 aacagccttc aatgttaaat taaatcctgt aaataacgct ctgtaagcca tgttctgttc
    17041 tttactacgt acagggtaat agtaaagaga taaccatcta tctgcgcaaa aatacatttg
    17101 cgcctcgtcc cttgttcttg attcctcggg aaaagtgccc ctaccataag tttgagtttc
    17161 tcgctcgtgg ggtttacctc gttccacttc cgagcatttc tgccggaact tcgtcactgt
    17221 ggcaccttca aggttataag accatatccg aagacttagg tcattcacct gccgtcaaac
    17281 cggaaatccg gaatgccctg gcttattgtt tgaccaggca cgatcactac gggcatcaca
    17341 gcaccgtgcg agcatggact ttcctctgct tccataagaa aacagcgatt atccgaacgt
    17401 tattcattta ttcttaactt acttatacta gcatacctat tcgttatcgt ccagcttatt
    17461 tccaaaaaca tgtttttcta aattagaaag acgctttaga atatcaaagt tggtcgttcc
    17521 agcaggttgt gccgctgctt ggaaagttgg agctggttgt gttgaagttc taagtggagc
    17581 attatcaagc tcttgtacaa gtcgaatatt ttccgcttga agtgcttcga tttcttgcgt
    17641 aaatgtactg taatctttaa taaccatgtc taaaaactcg tcaacatctt caggactata
    17701 accacgaagc ccagttttaa attctttttc caaaatttct ttacctgtta agtgatactc
    17761 aaattgttcc gaagtcatat aactccacct ctatctctat tcttacgtat ttttgttcta
    17821 atcatatact tacccttatt ttttcaaatc tcacaccatt tgtcaatcta ttcgagtgtt
    17881 ttttatgaaa ataactgttt acttccatat taaaacgttt ggttcatatc ctctacaact
    17941 tcttggagtg cataaaaatc aatacagtct atataataat tagactgttc ttttgcttga
    18001 atcgctcggt cataaaagaa tttcggcgaa ccttcttttt ctaaatcata tacaagtaat
    18061 gcgccatccg tattatcaat aataaaacca tctcttgccg caaattgcgc tggactttca
    18121 taaggacgct tcgtaataaa agcatggtaa tcggcttttt ctagtacttc gctcgcccat
    18181 aattggttcg cttcattcca gttagcactt tgcttttcaa acggttcaag gattgctagt
    18241 ttaatcggat agtctgcttt taattctgca accacatcgc cagcccaaag ttcaattcct
    18301 aactgaccag aaataatcac ccattcaagc ccatcttcca cgagtggaag caaatgccgt
    18361 ttaattgttt cttttatata aaccgcttca tctgcatcct ttttaaaaat tcccagttca
    18421 aaatttttat accccgtcac tgcgatggat ttcacatcaa ttcctctttt ctttttaaga
    18481 aatctctcac tctcgttagt gtatacttgg tagattggta gtgatctagg aagtgtttat
    18541 aaaaagactt tccattaaat gcacttactg cagtcatttg aacattatca caagcttgtc
    18601 ttaattgtag ttctcctaaa taaggaggac gctctttgtt tacccacgga atagctaatt
    18661 ctaaaaacgc atccgcgcta ttttttgctt cgtcaacgaa aggtttcata tctttataaa
    18721 aatcaaacgg ctttgcttct tcacggttac ttaaatataa ttcccaattt ttttcgtttt
    18781 gaagaagcaa tttttccgta cggtttaaaa gttccattct atcactcttt tcttcacatt
    18841 ttcagatact tcaagcatag cataggacgc aaaatcttgc ctaaaattag attattagct
    18901 aaaatatggt aaaatagacg aaggtacgtt ctatttatga ggtagtttca tgccgaaaag
    18961 agctattttg catttaattg atactatcat tttcattttt atttgttata atagatgata
    19021 gtctaaaatt cagaatagaa attttctgat agaggtgaaa aaaatggcta ttggttaccc
    19081 taacggcaag aagtatgcag cgagtcatga ggttcttcct caacaaaaac ggaaagctcc
    19141 tgtaacttat ggtaagcgtg gtatgtcttt ggaagatgac ctaaatgata cgattgcgta
    19201 ttatttaact cacgaaatag cagtcatcca caaaaaacct acccctgtcc aaattgtcag
    19261 tgtggactac ccaaaaagaa gtagtgccaa aattaaggaa gcctacttca aaacaccatc
    19321 cacaacagat tataatggtg tgtataaagg aaaatacgtt gattttgaag caaaagaaac
    19381 gcaaaataca acttcttttc cgttgagtaa ttttcacgat caccaaatga cacacatggc
    19441 aaacgtctta aaacaagatg gtattgtatt tgtcattatt gctttccaaa aactcggaga
    19501 aactcatttc attccctttg agaaatttta tccgttttgg gaacgtatgc aaagtggtgg
    19561 aagaaaatca gttactatag cagaaataca agatgtatca gaccaaattc cttatggtct
    19621 aaatccaagg cttgacttct tgcaatccat agacaaatta tacttctagt caaacctttt
    19681 ttaaaggaga gagattttta atggcagata aaccgcagac aagatctcag tatcgcaata
    19741 aacaaagtgg tggttctaaa aagaaatccc aaaaacgagg aaaacgagta gtagcgaata
    19801 ttttcaaaac tattttcttt gtgggattat ttttagcttt ctttggtatt gcggctggtg
    19861 caactgtctt ttacgattac gcaaaagatg caccaaaact gaccgactcc aagctacgag
    19921 atccactttc atctaagtta cttgataaag atggaaaagt tttcgcagaa gttggaaccg
    19981 aacggcggga atatattgaa tacaaagata tacctgaaac actaaaaaat gcaattctaa
    20041 caacggaaga tgcgcgtttt tatgaacatg atggcattga cccaattcga cttggtggag
    20101 cagtaattgc caatttgaca gacggttttg gcgcagaagg tgcaagtacc ctttcgcaac
    20161 aaatcatcaa aatgtcctat cttgattaca caaataaaac acttgcaaga aaagctcaag
    20221 aagcatggtt agctcttcaa ttagaagaaa aatatagcaa gaatgacatc ttagaaattt
    20281 atgttaataa agtctatatg tcagaccgtg tccacggcat gcaaacagct tccgaacatt
    20341 acttcggtaa aaatttgaaa gaccttacgt tagctcaaac agccctactt gcaggtatgc
    20401 cacaaagtcc gaataactac aatccttatg aacacccaga agcagcaaaa aaacgtcgtg
    20461 atcaagtttt aacaaatatg tatacacatg ataaaattac aaaagaagaa atgaccgaag
    20521 ctcaaaaaac atctatcact accggacttc gctcgaaaaa agatcgtgaa gataaaattt
    20581 acaaatacga ttcttacgtc acacaagtgt taagtgaaat tccaaaagaa tacgatgttt
    20641 atcgtgatgg tttaactatc catacagcgc ttgaccgtga tgcccaagaa tatacggaga
    20701 aaatgctcaa tacgaacgaa attgttaact tcactgatga tgaaatgcaa gccggtatag
    20761 tgcttcaaga tactaaaact ggacgtgttc aagcaatcgg aggcggacgt aaacaaaaag
    20821 taactcgggg atataactat gcaacccaag taaaacgttc tgttgggtct accatgaaac
    20881 caattgctga ctatggtcct gcttttgaat atttggattg gtcgactgcc catattttag
    20941 aagatgaacc atatacgtat tctggcggaa cccctattaa caactgggat ttcgcataca
    21001 aaggaccaat ttcagtaaga caagcacttt accaatcacg taatattcca gccctaaaaa
    21061 cccttcaagc tgttgggcta gataaatccg aggaatttgt taataaactt ggcatcacct
    21121 atgatgaagg acaaaacgta gaatccaacg ctattggagc aaacagttcc aacccaatgc
    21181 aaatggctgg tgcctatgct gcattcggta acaaaggaat ctataacaag ccacacactg
    21241 ttacaaaaat cgttttatca gatggacaaa cagaaattga cacagaacca caaagtactg
    21301 ttgctatgaa agaatcaact gcttatatgg tttcagatgt tctaaaagat gttctttcta
    21361 tcggaacagg tacatcagca gccgtaccag gcgtacctgc tgctggtaaa acaggtacaa
    21421 cgaatattcc acctgaattc acttcgaagt actactaccc tagtggtgct gcccgtgact
    21481 catggttcgc tggatataca accaattatt cgattgctgt atggaccggc tatgatgaca
    21541 agaaaaaata tgtttcagca agtgaacaaa aaattgcgca gcggatgttt agtaaattaa
    21601 tggctcatgc atctgccggt aaaactactg cagatttcaa aatgcctagc aatgttgttt
    21661 ccgtcccaat tctaaaagga agcaacccaa ttgcacgcgc tgctgcaggc actgcaagtg
    21721 ataaagtaag ttacgaatta ttcttatccg gaaccgctcc aaccaaaact gcttctactc
    21781 cagaagacga gaagaaaaaa gcagaagaag ctgcgaagaa gaaaaaagcg gaagaagata
    21841 aaaagaaaac agatgaagag aagaaaaaag aagaagaggc taagaagaaa gcagaagagg
    21901 aagctaagaa aaaggctgaa gaagaagcca aaaatcttac tgcccctgcc ggcttaagag
    21961 caagttataa tgccggctct aagcaaatca atgtttcttg gtctgcggta gatggtgcaa
    22021 cctatgaagt aacagtcaat ggttctacta cgacagtatc ttctacttcc gtttcagtaa
    22081 gcggaggtaa tcctggagac actgtttcca ttaacgtcgt cgctgttaaa gacggtaatc
    22141 gaagccctgc ctcctctact acagttaaaa ttccagatag ttaatacaaa aagagcggaa
    22201 gatgtttaaa catcttccgc tcttttttat gatcttttcg caattaattt acgctgttct
    22261 aacattaatt catttaattg ccgaaaacct aaatacgtat tacctcgctt taatacatat
    22321 tctaaccgct catctaaatt gagtggtttt gtctccaacg ttttaatttg gtccatcaaa
    22381 ttatctagct gtactggccg gtgattactc caaaataaaa tagataaaaa aataccgagc
    22441 gcatctctaa ccgttacagg agatggtttt ttatgcactt tcaaatcagc ttccatactt
    22501 tcagccaaat tagtcatatg tttcgccaat ttgcgacaag ctcgctctgt ttcatttttc
    22561 caaggaataa ctccaccacc tttggtaaaa aactgttgtt cttgccaaaa aggtagacca
    22621 ctaacataaa tggattctgg atcatattct tctaaaataa catccggtgc tgggaaatca
    22681 ggatgtgtta attctactgc atatttaaat tcagccatcg aatcccctca ctttcgcttg
    22741 tttttttcct tctctgcata aatagagtaa gggacaggtc gggcattctg ggtttcttgc
    22801 tttacaatga tatcttccaa agaaaatcat ataatgatgt gcatcagacc agagttcttt
    22861 tggtagcttt ctttttaacg tttcttccac ttctacaaca gaatctttcc atctacaaat
    22921 ccctaagcgt ttactaattc gttcgacatg tgtatctact gcgattgctg gaataccaaa
    22981 gccaactgat aaaacaacat tggccgtttt tctacctaca cctggaaggc tctcaagttc
    23041 cgcatgcgtc tttggtactt ccccattaaa ttcgattaga attttctcgg ataatccttg
    23101 aatatttttt gctttattac gatataagcc aatagagcga atatcttcca tcaattcttc
    23161 cagtggaaca gccaaataat cttctggtga gtgatatttt tcaaacagcg aggcagtcac
    23221 gcgatttact aacacatctg tacattgagc ggataagaca acagccacca gtaattcaaa
    23281 cgtattttta tgaactagct cacagtgtgc tgctggaaac atttttgcca tttcttctat
    23341 gcataatacg gtttgtttat tcgataacaa tttgtgtacc tcaccctttt cttttttcaa
    23401 gccagtcgta tagaggaatc gaacctgcgc tttttttcac ttccgtttgg ttaattgctt
    23461 ggcttgtgcg cccattttga tgaaattctt ccgctacacg cttggcatct tctattgtct
    23521 taactccttg tttcgaccag ttaagcagaa tcctatcaat atatcggaaa tttaattttt
    23581 gcgaaataac agcttctttt aatgcttctt tgattaaatc cgggctcgtt ctatcttgct
    23641 ctacccacgc ggataacatt tctgcttcca ttggagaaag cggtcttcca aactctgctt
    23701 cgaatagagt atataaactg gtttgttttt ctaactcttt ttcatgttta ctatctgctt
    23761 ccttgttttc atataaagcg actagtttac cccagagtgg tgccaaatta tattgttcag
    23821 aaatcattcg tgaattatct tggctttgtt cgatagcaat cacacctttt ttcaagagtg
    23881 agtccatcgt tttaattgtt tcttccagtg gaagcgttgt tctattggtt aacatttcca
    23941 tcgacgggaa aaattctgcc tctgctgcaa aggattgaat ttgaagtaat agcactagtt
    24001 ctacttcgtt taagccaatg gttgcatagt ttttcactag cacttgcggt aatgtcactt
    24061 gcccttcagc catccatttt tcaagaattt ttggattcat atttaacacc tcactacaaa
    24121 attataacat ggttttcgag ggaaaaatat aaaagtactg ctaaaatcat gaaatcccgc
    24181 ggaaaagatt attttcaatt taaagtccac aaaaaaagtg aagccagtat gttggcttca
    24241 ctttttaact tacggatata aacggtttag taaacgtggg aacggaatgg tttcacgtac
    24301 atgttctgtg cccgaaatcc aagcaactgt acgttctaag ccaagaccaa aaccggaatg
    24361 tggaacagag ccataacgag ctaagtcaag gtaccagctg taggcttctt gatccaaatc
    24421 gaagtcttcc attctagctt gaagcgtttc taaatcgtga atacgttccg atccaccaat
    24481 gatttctccg tatccttctg gagcaatcat atcagcgcac aacacaactt gatcgttttc
    24541 tggatcttcc ggcatataaa atggtttaat tgcttttgga taatgtgtaa tgaaaactgg
    24601 tttttcgaag ctgtctgcaa tcgctgtttc atgtggtgcc ccgaagtcat ctccccaaac
    24661 aatatcatca aagcctaatt cgtgtaaacg ttcgattgct tctgtataag taatacgcgg
    24721 gaacggtgca accatttttt ctaaatgact aacatcacga ccaaggcgat ctagttctaa
    24781 gcggcagtta tcaagaactg cttttactag gaatgccacg tagttttctt gtacttgtaa
    24841 gctatcttct aatttgtaaa atgccatttc cggttcaatc atccagaatt caattaagtg
    24901 acggcgagtt tttgatttct cagcacggaa agttggaccg aatgagaata ctttaccgaa
    24961 agccattgct gctgcttcca tgtacaattg accactttga gatagaaacg catcttcatc
    25021 aaaatatttc gtatggaaaa gttcggttgt tccttctgga gcacttccgg tcaagattgg
    25081 tggatcgatt tttaggaatc cttctttatt gaaaaactca tagctagcgc gtataatttc
    25141 gttacgaatt ttcataatcg catgttgacg gttagaacgt agccataaat gacggtggtc
    25201 cattaaaaat tccgtgccat gctcttttgg tgtaattgga taatcatgtg attcgctaat
    25261 tacttctaca ccagatacag ccatttcata accaaatggt gaacgagtat cttcgttaat
    25321 tgtacctgtg acatataaac ttgtttcttg ggttaatgct ttagcagttg cgaaaatatc
    25381 atcgccaact tctgctttta cgacaacgcc ttgcataaat cctgttccat cacgtaattg
    25441 taagaaagca attttaccac ttgaacgctt attcgcaagc catgctccaa tagttacttc
    25501 ttttccgaca aattcggatg cttgattgat tgtaattttc acttgtctac actccctatt
    25561 tcataaaact tttgattcga tttatagctt cttggaataa gtctggattt gttgcataag
    25621 aaaggcgtat ataatcaggc attccgaatc ctgagcctgg aatgactgcg actttcgctt
    25681 cttctaaaag agctgctaca aaagcatcta catcctgaaa acctttttta tgtgccgctt
    25741 cttttacttc aataaagaaa taaaaagcgc catctggttt tttcggttta aaacctggaa
    25801 tgctacttag ttctggataa aagcgttcca ttcgttcttc aaaagctttg tacatttttt
    25861 ctggaacttc ttgactacca acatacgctt caagtgcagc atactgggca ttagcagttg
    25921 gattacttgt taaatgatcc gctaacttac tcattccagc aatgatttct ttatttgcag
    25981 ctgcgtaacc aattcgccag cccgtcattg aatatgcttt agatacacca ttaataacaa
    26041 tagttaaatc atacaaacgg tcactcaaac tcgcgataga gactaaatca gctttgttac
    26101 catagtataa tttttcgtat atttcatcag ataaaatgta aatctgatgt ttttcagcaa
    26161 cttcaccaat agcaataagc tcctctttcg tatagcacat accagaaggg ttattgggtg
    26221 aatttaaaac gattgctttt gtttttttcg tgatagcttt ttcaaaattt gctgctgaaa
    26281 ttttgaaatc cgcgtcaaaa ccagtttcta caaaaacagg aataccacct gctaatttga
    26341 cttgttcggg ataagttacc caatatggaa ctggaataat gacttcatcg cctggatcta
    26401 aaatcgtttg aaacgcagag tagagtacat gtttagcacc agtacctacg aaaatctggt
    26461 tcgtttcgta gtttaagaac tgatcttttt ggagcttatc aacaatcgct tgttttagct
    26521 cgatgattcc actagaagga gtatatttgg tgaatccttt gttcatggac tcaattgctg
    26581 catcgataat attctgcggg gtattgaaat ctggttcccc agcacctaag ccgataacat
    26641 caattccttc ttgtttcatt tgttttgctt tagccgtaat cgcaagtgtt ggcgacgggg
    26701 ccactccttt gacacgtttt gataacggta agtccatttt attccctcct ccaatttagt
    26761 tacaagtttt caatctctct gtaccattca cctgtttcaa agttaatgtc aaagtagttt
    26821 agcttgtcat tcttatctaa gtaggcaact tcccaaatag gcgtttcttt ttccattcct
    26881 aaattcacat gtaaaatttt ctttggattc ttttcttttg tgactttatc gcgtgcttgt
    26941 tgttctgtaa tcccatcaga tgcgaattta acatatactt tgtcggattt tttctttgga
    27001 acccaaacaa tgatattctt attcttactg ttcttaccag ttaatacgta atacacttct
    27061 tttggcccat tataaagata aaattgatct gttgttttta aatcaacttg gccacttatt
    27121 cggtctaagg cttctgtttc tgcattggtt actggttttt ctgcatatct aaagtacaga
    27181 aaagctgcta cgacaagcac aataattatg ccgagaataa tcgctatcca tttgccaatc
    27241 ttacgcttag gttttctatt tcgcaaaata atctcgctca tttctatttc taaattaccg
    27301 gaattcctcc ggcgatatgc attttcattt tcgcatagat acattatagc aatagcggcc
    27361 taagatttga agtcatatca ggaaaaattt aaccttcctt aaagaattca ctcacttctt
    27421 ctaataaatc cgcctgtttg cctttcaaga ttggcgcgct tgggattgac tctaaaaatg
    27481 cttttccaaa ttttgtcgta tctactcgat tatcaaaaac aaatacgatt ccgcggtcgg
    27541 attctcttct aattaaccga ccaaaacctt gcttaaatcg cagtacagct tcaggtagag
    27601 aataggtttg gaaagcattc tccccgcgtt ctttgcgaag ggatatttgt gcttttgtat
    27661 aagggtcatc catcggagcg aatggtaatc tcacaataac tagacatgac aagtcttctc
    27721 ctggaatatc aatcccttcc caaaagcttg tcgtaccaag caaaatagac ttatcaaaca
    27781 tttggaattg ttttgtcagt cgtgcggcgc ttcccgctga aactccttgc gctagaagga
    27841 catactcttc taatgatttt tcatttttca tatgataata cgttttttgt aacatatcag
    27901 aagcggtgaa aagaacgagc atccgtccat tcgttttcac tgctatgtgg cgaatatatt
    27961 tcgcaagttc caaggtatat cgctcaattg gtgtgtcttt aattgggggc atatcatctg
    28021 gaatcatcac tcgcgcattt tctttataat caaacggtga aggaatgcgt ttttccataa
    28081 tttgttcttc ttccagaccg agacttttcc gtaaataatc aaacttccct tttacggtta
    28141 aagttgccga agtcatgatg acactttctt ttttagcaaa aaactctttt ccaagtgtcg
    28201 gctccacttc catcaagaca gcttttagac gaatgctaga aatagaatga tttttgtctg
    28261 cttgtaaata aatggtcaaa ataggcgact tcttatgcaa catttgctcc agttgtttta
    28321 ccatattctt ccaatcaagt aaaaaagcat acatttcttc caaaaaggcg ctctctgcct
    28381 cacctagttc attttcttct tgtttcccct gttctaacaa tgtttccata tttttttcgg
    28441 actcttttag caaatgtaat actttttcag cagcgtaata aaccttgtca ttccaagcat
    28501 ctttttcgct gttttctact aagacaactt cttgtaaatt tttacgcgcg aagtttaact
    28561 gcattttcag aagaccgaaa aactcttcca ccgcatcact taacttcatt gccgcaatat
    28621 ctaaatcata taaactgtct gcttctggga aagccattgc aagccttgtg agaagggaat
    28681 atttttctaa agagcctagc tgattcaaaa aatattttat ttttcggtaa gacagaacaa
    28741 aacttccttg catacgagca ctatccgcaa aatgatgggc ttcatcaatt actgcaaaag
    28801 catacttagg caatgtttct cttcccgaaa aatggtcatt taaaagtagt gcgtgattaa
    28861 caatgactaa atctgcattt ttggcttgtt tgatgttgaa tttatagaaa tcgtgtgcga
    28921 gccaaggatc atgtttttca gataaaaacc agcctgtgtg cttcatccga ttccagaata
    28981 actccccgcc gctagatagg ttcacttcat caatatcacc agtcgttgtt tccgtcagcc
    29041 atacgagcaa tttaagcttc gtcacaacta catcatattg cgtatcgact tcttgaagta
    29101 actgctcaaa tttaaacaaa ttcaaataat gatcgcgccc ttttagtaag ctagctttca
    29161 ctttgaatcc tgttaatttc gttaagagtg gtacatcttt ttcaaacaat tgagcttgaa
    29221 gcaagttggt gtatgtacta ataactaccg gtaattcagc ttgtttcgct tggtaaatag
    29281 ctggtaaaaa gtaacctaac gatttcccaa tccctgttcc cgcttcaatc aaggcatgtt
    29341 ttcctgattt catcgcttgg aaaaccaaat tcatcatttc aaattgacca cttcttgcat
    29401 aaagtggcgc tccagctttt ttgaatagtg ccattttagc ttcgtctgtt tcaggaaatt
    29461 caagtaaatc tgctctacta taggtgggct tttcgacttc ttttttgcga ataactagtc
    29521 cacgatgttc tacgaatgct ggatcaagtg gcttgttttc tcgctctttt cgcatttcaa
    29581 tttcaaataa gagctctggt aaatagcttt ttagactgcc agaaatcgtt gtcatttgac
    29641 gaatgacagg tagtggtaaa ttttctagct tttctaagag aaggagtagt aaatctgctg
    29701 tcacttccgc atcactatcc gcacggtgcg gtttatcgtg cccaagatta aattcatcgg
    29761 acaagtcttg tagtttataa ctatcgatgc ccggatacat aattctagct aattccacag
    29821 tatcgagttt tttcattttg ccaagagaaa ttcctgcacg cgtcatttct cgttctaaaa
    29881 atgtccagtc aaatgacaca ttatgtgcca caaaaatagt atcttctagt aaattcgcga
    29941 taatcggtgc gacatcttca aacagtggag catttttaac gtcttttggg gagattcccg
    30001 ttaattcttg aataaacgca ggaatcggtt tttctggatt taaaaatgtc gtgtatgttt
    30061 ccagacgttt tcctgattca acaaagcaag cagcgaactg gataatccgg tcctctcgtg
    30121 aagcttgatt tcctgttgtt tctaaatcga cgactatata gcgtttctgt ttcatctgct
    30181 ccacctcttt ccttcactgc ttttattcaa aaataacgat gcaaacaaac gagtagcttg
    30241 agcagaaatc cactcaagct ccccgaactg attataaagt cgtatgcgct ttttcttctg
    30301 gaagaatcat ttcaatatga tttttttcat ctaaaacaac tattttgggt tcatgtgttt
    30361 tcgcttcttc ggtagtaaac attccgtaac tcataataat tactacgtcg ccaacttgga
    30421 cgtgtctagc tgcagctccg tttagacaaa tcacaccact tcctggctca cctgggataa
    30481 tataggtttc aattctagca ccgttattgt tatttacaat ttgaactttt tcgtttggaa
    30541 gcatatccac tgcttctaaa atagcagaat caatcgtaat acttccaaca taatttagat
    30601 tggcttctgt tacagtcgct cggtgaattt tgccattcat cattgttcta aacatttttt
    30661 accgcctctt cacatttatt aattcattat caattaaacg agctttcgaa tattttactg
    30721 ccgctgcaat gattattcct ttggtccagt ctgttactgg tgtaaattca ggataggaat
    30781 agagcgctaa gtaagcaatg ttctcatggg atggttgctc atttatttta tctgtcatga
    30841 cttggactat tttagcctca tttgtttccc cagattcaat aagttctcgc cctagttgta
    30901 aagcttcatg aatcaccggt gcttcttttc gttctttttc tgttaaatag acatttcgtg
    30961 aacttttggc aagtccatct gcttctctaa cagtcgcaat gattcgtaaa tttataggga
    31021 aaaagtagtc ttctactaga cctgaaacaa cggccacttg ttgagcatct ttttgaccga
    31081 aataggcgtt atctgggttc actaaatgaa atagcttcgt taaaaccgtt actactccgt
    31141 caaaatgacc ttcacgatca gcaccatcaa gtacagaaac tcgtttgatg acatgtagtt
    31201 tggttgctag ttcggttgga tagatttctt cgactgtagg tacaaataaa atatccacgc
    31261 cgccttcttc tgcgagcttt gcatcgtgcg cttcatctcg aggataagca tcaaagtctt
    31321 cgttcggacc gaactgggtt ggattaacaa aaacactcat aacgacaaaa tctgtttctt
    31381 ttctcgcatg gctgacaagt gtcatatgtc cttcatgtaa aaagcccatc gtcggaacgt
    31441 aaccaattgt tttattcgct tttttttgct ctaaaatagc ttctttaagg tcttgtttat
    31501 ttcgaataat taacatttgc tattcccttc cataaaggcc ttttaagtct tcttcagcca
    31561 tggtaaagct atgtttcact tctggaaacg tcgctgcttt tacttctttt acgtagcttg
    31621 ctagtgctgg ttcgattctt tcatcaatgt ccgcatacgc ttttacaaat ttggcgcgac
    31681 gactgattcc ataaccgata atatcgtgat aaacgagtac ttgtccatct gtttctacgc
    31741 ctgctccaat accaattgta gggatagaaa gtgctttact tactttttca gcgagttgac
    31801 gtggaattgc ttcaagtacg agtgcaatcg ctccagcagc ttctacagct aacgcattat
    31861 ccattagctc ttgtgcttct tgggcagatt tagcacgtac tttatagctt ccagttaagc
    31921 caacactttg cggggttaag ccaagatgcg cgacaactgg agcacctgct tctgttaggc
    31981 gagcaatttt gttaacgact tctcctgctc cttctaattt tacagcatga gcgccacttt
    32041 cttggataat cttccgtgca ttttggatag tttcatccac tgaaccatga tacgtcataa
    32101 acggcatgtc tgtaacaaca aatgtatctg gtgccccgcg cttcacggct tttgtatgat
    32161 gaatcatatc atccatcgta actggtacag ttgaatcgta gcctaatact accattccaa
    32221 gtgaatcgcc gactaaaatc atatcagctt ctgcttgttc tacattctta gcagaaggat
    32281 agtcatacgc ggttatcatc gttattttct ctccgttttc cttcatagca aaaaaatcta
    32341 ctggtctttt cattttctta gctccttttc gtccctgtta aattacttta atcaaggcaa
    32401 aaaacatatt tttttagtag cattagtatg atccggtaaa ggtatcatcc attcattgct
    32461 accatatgta taataacata aatagatgct tacttaaagt atgtaaattg aagagaggcc
    32521 tactctgaaa cctctccact tactttattc atccaattcg ttaatttcgc cggttcatcc
    32581 gttgctgcat aggtagacgc tacttttcca tcttttaaat aaaccatcgt tgggacagaa
    32641 tcgatgtcca ttttttctaa aagagcaatc atatcatcgc gactcttttc ggaggcttta
    32701 tctgtgttat aataagccat tttttggtct ggttgtcttt ttttaagttc tttctttaac
    32761 ataggttgaa atgcttggca atcttcacag gtcggacgcc caacgtaaac aaagccagtt
    32821 gttttatcgg ccattttttg cttgaaatct ttggtggaaa tggttgttag aaaagaggcg
    32881 ctttcttttt ctgtttgatt tgctttctct tccgtttctt ttttattatc gccgcatgct
    32941 ccaagtgtaa ggattacggt aattgatgtt aatagtaata gtattttttt catctaaaca
    33001 gctccttcgc atttattgta cttgattttt cccaaaaaag aaaaacccga aaaag
//
LOCUS       DASDXX010000007        31457 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.007, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000007 DASDXX010000000
VERSION     DASDXX010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 31457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31457
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.007"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            30..1235
                     /locus_tag="U0280_000288"
     CDS             30..1235
                     /locus_tag="U0280_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEM2270251.1"
                     /translation="MESVFMFFCTLLVWLMTPGIALFYGGMVRRKNVLSTAMYSFSSM
                     AIVSILWVIVGYSLAFAPGNGFIGSFDWTFLHNVGFAANDTYSDAIPHILFMMFQMTF
                     AILTVAIISGAFAERMNFSAYLIFIILWSLLVYSPVAHWVWGDGGWLRNLGALDFAGG
                     NVVHISSGVTGLVLAIMIGRRKEADSASPHNLPLALIGGILVWFGWYGFNVGSALTID
                     NVAMIAFVNTNTAAAAGIIGWGLVEWLTNKKPTMLGTISGAIAGLVSITPAAGFVTVP
                     SSLIIGFLGGALCFWAVFWLKGKVKYDDALDAFGLHGIGGIWGGIATGLFATTKVNEA
                     GADGLFYGNASLVVKQLIAIGSTVAYVAIATAIIVVIIKLFLPIRVNEEQEYKGLDLT
                     LHGEKAYQE"
     gene            1249..1614
                     /locus_tag="U0280_000289"
     CDS             1249..1614
                     /locus_tag="U0280_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEM2270252.1"
                     /translation="MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKG
                     FIELYRGTKKESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEV
                     VKISTGETGIDALQDKPSK"
     gene            1764..2144
                     /locus_tag="U0280_000290"
     CDS             1764..2144
                     /locus_tag="U0280_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270253.1"
                     /translation="MRKIPIFTVLVAILLFGGYYLYQHASSKVDVTFNFVVDQKSKNN
                     TITGKIDGAGNKSITLPLSEESWDAVKKGNRYNVEATFYNKNKISSSEAKELDGPFWS
                     NDSNRGLLVNKVHVENIQELSDDF"
     gene            complement(2184..3959)
                     /gene="aspS"
                     /locus_tag="U0280_000291"
     CDS             complement(2184..3959)
                     /gene="aspS"
                     /locus_tag="U0280_000291"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEM2270254.1"
                     /translation="MEKRTSYCGELNEAHIGQSVVLHGWVQKRRDLGGLIFIDLRDRE
                     GIVQVVFNPEFSKEALEIADSVRNEFVVTIKGTVHARGEKAINEKLATGKVEVLAEEI
                     TILNSSKTPPFYIEDGVNVSDELRLKYRYLDLRRPEMNNIFKMRHTVTRTFRNKLDAL
                     GFFDIETPYLTKSTPEGARDYLVPSRVYPGNFYALPQSPQILKQLLMTAGFDKYYQIV
                     RCFRDEDLRGDRQPEFTQIDLETSFLTKEEIQAITEDMLVDVVKEAKNITIDKPFPRM
                     TYKEAMDRFGSDKPDIRFGLELQNVSDVVKDVDFKVFQSAIENGGEVKAINAKAAAAN
                     FSRKDLDALGVFVANYGAKGLAWLKVEAGELKGPIAKFFPEEKATELKASLQAEDGDL
                     LLFAADKADIVAASLGALRNKLGKELNLINEEELAFLWVTDWPLFEYDEEAGRYVSAH
                     HPFTLPKEEDIPLLETDSSKVMAEAYDIVLNGYEIGGGSLRIYKKEVQESMFRALGFT
                     DESAKEQFGFLMDALEYGTPPHGGIALGLDRIVMILAGRNNLRDTIAFPKTGSAVDPL
                     TNAPGEVSEAQLAELKLETVKKETN"
     gene            complement(3961..5238)
                     /locus_tag="U0280_000292"
     CDS             complement(3961..5238)
                     /locus_tag="U0280_000292"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEM2270255.1"
                     /translation="MDLQLPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVF
                     EHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQP
                     IKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLINI
                     KLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLI
                     QSAPSILDFLNEESVAYFENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEG
                     FGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYV
                     ITAQPEAELKAVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQ
                     TGNYQLKNMETGEQEAVSETTILEKLINTKGEN"
     misc_binding    complement(5302..5529)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            5689..6972
                     /locus_tag="U0280_000293"
     CDS             5689..6972
                     /locus_tag="U0280_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2270256.1"
                     /translation="MKNKFIFITVVSILLIAAGIFTTIAMANANSVVVKAEVLNVRSG
                     PGLAYDVTSQARKNEVLRVVGEENQWYKVQLDNGNSGWVASWLVENTDVSAASNSVAI
                     VSSDGGLNVREKPSTSSKALGLLNNGDQVTVTSQQNGWAQIQYNGTSAWVSSDYLTIR
                     ESVTKVDESELQTVTIRDDSTNIRNKPSRDGAVIEKANSGQGFAIQGVQGDWYKIRTT
                     SGEEGYVANWVVDVSDKGQTSSPRSKTTKLSEATIVIDPGHGGNDPGAKGSNGTIEKE
                     MTLKTAKQLKQKLEARGAKVILTRNSDKYVSLKGRTNIAAENNADVFISIHFDSLEDA
                     SKGVSGQTTYYYDNSDKSLAESINTTLGKDLPTTNRGARVGDYYVVRENSQPAVLLEL
                     GYLSSAKDESNINSASYRSQIAESVTDGLSNYFSN"
     gene            complement(7010..7462)
                     /locus_tag="U0280_000294"
     CDS             complement(7010..7462)
                     /locus_tag="U0280_000294"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEM2270257.1"
                     /translation="MRVLLQRCYEASVSVEEEVISEIAGGLCLLVGFTHKDTPETVDY
                     MAKKIVGLRIFEDESEKMNISLAERGGAILSVSQFALYADVSRGKRPSFTKSAPAEKA
                     ETLYDLFNQKLTEAGFIVETGVFGAMMDVKIVNHGPVTIMLDSDEMRK"
     gene            complement(7478..9694)
                     /locus_tag="U0280_000295"
     CDS             complement(7478..9694)
                     /locus_tag="U0280_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM2270258.1"
                     /translation="MAKEQNLTAEQVIDMASHYMNQEHLALVKKAYEFARDSHKEQFR
                     KSGEPYIIHPIQVAGILVELKMDPSTVASGFLHDVVEDTPVTLADLEEVFGSEVAMLV
                     DGVTKLGKIKYKSHEEQQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQ
                     RRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRIVHLMKQKRDARERYL
                     HDVIDGVNENLDELNIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVSSIK
                     DCYAVLGIIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQ
                     IAEYGVAAHWAYKEGKVVNSKTSFDNKLTWFREILEYQNESDNAEEFMESLKLDLFSD
                     VVYVFTPKGDVYELPNGSVPLDFAYRVHTEIGNKTIGAKINGKIVTLDYKLKTGDIID
                     ILTSKHSYGPSRDWLKLVQTSQARNKIKQFFKRQAKEENVEKGRDLVEKEIRQLGFES
                     KKIMTPENLRKLADKLNFSHEDDLFAAVGYNGITALQVANRLTEKLRKERELEAETEK
                     LLTQSENKPSNSDANNEKLKIKHNAGVVVQGVGNLLIRLSRCCNPVPGDAIVGYITKG
                     RGISIHRQDCPNVQAIEPERLIEVDWEDADSQAKNDYNVDIEIYGYNRNGLLNDILQV
                     INSLTSNINGVNAKVDNNKMATLVVTLQIHNINHLQRVVDKIKQIPDVYTVRRLMN"
     gene            complement(9900..10421)
                     /locus_tag="U0280_000296"
     CDS             complement(9900..10421)
                     /locus_tag="U0280_000296"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEM2270259.1"
                     /translation="MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIV
                     EYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTN
                     KLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHK
                     KLNGYDRLILMQL"
     gene            complement(10411..12762)
                     /gene="recJ"
                     /locus_tag="U0280_000297"
     CDS             complement(10411..12762)
                     /gene="recJ"
                     /locus_tag="U0280_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEM2270260.1"
                     /translation="MIHSKYLWNIEEAAEDKASQLAEQLKISLPLAKLLWKRKITTQG
                     QFDKFFHPEKYESYDPFLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMK
                     TLRHLGANAEFYIPNRFTEGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEI
                     GLDVIVTDHHEPREVMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPKEL
                     LDLVAVGTVADLVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIG
                     FGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAME
                     AIEAKETLGNVLVVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSV
                     DAFHLYQALDKHRDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEASFLSEEDFRPAL
                     KIEEKINIADVSVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTML
                     ATEENDATLDSIGFGVGDLVEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHW
                     QLFDVRNKSEWARILQEQTESRVFVCFEERTIGTLGEKNYILVDEKADFTADFQTEEL
                     VFADMPTKTELVETIVRETKPERIFVHFDAAEGNQIPAIPDRLAFAELYSLIKKFQPF
                     PIKKYTPRLMQKFGWNKEQIDFMSKVFFDLEFAKMESGQIIINEVVEKRNLDESLVYQ
                     QKVEEITTRKKLLYSNYTELHSWMESMMETSIYPNAEELENGN"
     gene            complement(12867..13211)
                     /locus_tag="U0280_000298"
     CDS             complement(12867..13211)
                     /locus_tag="U0280_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HEM2270261.1"
                     /translation="MKENKVQWQVIAGIILALIIAIFAVINVDPVEVNFLFAQAEWPL
                     ILIILGSVLCGCLIIFFLNIAKSRGMKKQVKQLTSEKAELERQLAAAKAMKTHSSKVE
                     TRDTENVVDTTK"
     gene            complement(13309..15573)
                     /gene="secDF"
                     /locus_tag="U0280_000299"
     CDS             complement(13309..15573)
                     /gene="secDF"
                     /locus_tag="U0280_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecDF"
                     /protein_id="HEM2270262.1"
                     /translation="MVKKSKIVIFFLVVAIIFGAVFGTAKMVMQNINLGLDLQGGFEV
                     LYEVSPADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQE
                     EARKMLSTTAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASV
                     TKTILAEAPDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFT
                     TEEAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAV
                     YRLPGVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKE
                     EIKVGRSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILV
                     SFLTAVWGSRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFV
                     KHHRLFLSIFAAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAI
                     NMPSDDIVFQGSGSKTAVVSYKGTLSQNDVAKFKNYFEDKYKHEPSISTVSPTVGKEL
                     AKNGFWALGVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFI
                     AAVLTVIGYSINDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILT
                     VIFTVLALVLFGSESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKKGPIST
                     VKKKKPRNNGQPVV"
     gene            complement(15674..15964)
                     /locus_tag="U0280_000300"
     CDS             complement(15674..15964)
                     /locus_tag="U0280_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="post-transcriptional regulator"
                     /protein_id="HEM2270263.1"
                     /translation="MDTFSEWYEDLAPAISIKVEDFHILGYREIKASHIWAFLTEEKW
                     KNEPTPALHERINDVMQMNIGQLMQFIMTTAEQESNNHVSQADSMLQPNVED"
     gene            complement(16107..16436)
                     /gene="yajC"
                     /locus_tag="U0280_000301"
     CDS             complement(16107..16436)
                     /gene="yajC"
                     /locus_tag="U0280_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM2270264.1"
                     /translation="MGGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDK
                     IITIGGLHGIVEAIEDGTVILKCGNSKLTFDRNAIRTVLEKGNAVSNPVVAETTSDDT
                     EVVEDNK"
     gene            complement(16470..17609)
                     /gene="tgt"
                     /locus_tag="U0280_000302"
     CDS             complement(16470..17609)
                     /gene="tgt"
                     /locus_tag="U0280_000302"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEM2270265.1"
                     /translation="MSAIRYELIKTDKQTGARLGKIHTPHGTFDTPMFMPVGTLATVK
                     TMSPEELKAMGAGIILSNTYHLWLRPGEELIREAGGLHKFMNWDQPILTDSGGFQVFS
                     LSKMRDIKEEGVHFRNHLNGDKLFLSPEKAIQIQNALGSDIMMSFDECPPYPASHEYM
                     KKSVERTSRWAERGLKAHVRPEDQGLFGIVQGGAYEDLRAQSAKDLVSLDFPGYSIGG
                     LSVGEPKDVMNRVLEHTTPLLPANKPRYLMGVGSPDSLIDGVIRGVDMFDCVLPTRIA
                     RNGTCMTSSGRLVIKNAKFTHDFRPIDENCDCYTCKNYSRAYIRHLIRCEETFGIRLT
                     TYHNLHFLLNLMKQVRGAIMEDRLADFREEFFEQYGFNRPDAKNF"
     gene            complement(17696..18724)
                     /gene="queA"
                     /locus_tag="U0280_000303"
     CDS             complement(17696..18724)
                     /gene="queA"
                     /locus_tag="U0280_000303"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEM2270266.1"
                     /translation="MKVEDFDFDLPEELIAQTPLLDRTSSRLMVLDKKSGDIKDQHFT
                     DIISYLNEGDALVLNDTRVLPARLHGIKDETGAHIEVLLLKQKEGNAWETLVKPAKRI
                     RKGATITFGDGALKAICLEELEHGGRILEFSYEGIFYEVLEQLGEMPLPPYIKEQLAD
                     QDRYQTVYAKENGSAAAPTAGLHFTEDLLAKISAKGVEIIFVTLHVGLGTFRPVDVED
                     TTNHKMHSEFYRLTEESAERINKIKAQGGKVVAVGTTSIRTLETIASRHDGKLVAESG
                     WTEIFISPGYTFQAVDALITNFHLPKSTLIMLVSALSDRTKILAAYNHAVEEQYRFFS
                     FGDAMFIH"
     gene            complement(18728..19735)
                     /gene="ruvB"
                     /locus_tag="U0280_000304"
     CDS             complement(18728..19735)
                     /gene="ruvB"
                     /locus_tag="U0280_000304"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEM2270267.1"
                     /translation="MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFI
                     EAATLRNEALDHVLLYGPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTS
                     LEPGDVLFIDEIHRLSRAIEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGAT
                     TRAGLLSAPLRDRFGVIDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGT
                     PRIANRLLKRVRDFAQVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFR
                     GGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQRTPRGRIATETAYNHLGISYEKE
                     V"
     gene            complement(19751..20356)
                     /gene="ruvA"
                     /locus_tag="U0280_000305"
     CDS             complement(19751..20356)
                     /gene="ruvA"
                     /locus_tag="U0280_000305"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEM2270268.1"
                     /translation="MYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRLEGTEA
                     QVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIE
                     SEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAV
                     LALEALGYSTRELKKVIPKLSKEEDLTSDAYIKLALQLMTK"
     gene            complement(20480..21415)
                     /locus_tag="U0280_000306"
     CDS             complement(20480..21415)
                     /locus_tag="U0280_000306"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM2270269.1"
                     /translation="MKPRKVMIIGAGNVGTAAAHAFVNQKFVEELILVDLNKERVEGN
                     RKDLADAAAFMPGKMDITVRDASDCADVDIAVITVTAGPLKEGQTRLDELRSTSRIVS
                     SIVPEMMKGGFNGIFLIATNPCDIITYQVWKLSGLPRERVLGTGVWLDTTRLRRLLAE
                     KLDIAAQSIDAFILGEHGDSQFPVWSHSSIYGKPVNEYSVEKLGEALDLKQIGETARD
                     TGFEIYHQKGCTEYGIGGTIVEICRHIFSGSQRALTVSCVLDGEYGESGLAIGVPAVL
                     SQNGVKEIISLKLDEKEKEAFANSVAVIKKSIQSI"
     gene            complement(21485..22210)
                     /locus_tag="U0280_000307"
     CDS             complement(21485..22210)
                     /locus_tag="U0280_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2270270.1"
                     /translation="MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNL
                     NPSLRLVMDKAKAVNMPNDNIKRAIDKAAGNTSGENYDEVTYEGYAPGGIAVLVHALT
                     DNKNRTSTNVRVAFNKNGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEA
                     GADDVEVSEDVFEIFTDPATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQF
                     DKMLEALEDDDDVQEVYTNAEIN"
     gene            complement(22321..23169)
                     /gene="pheA"
                     /locus_tag="U0280_000308"
     CDS             complement(22321..23169)
                     /gene="pheA"
                     /locus_tag="U0280_000308"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011702338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEM2270271.1"
                     /translation="MKIAYLGPAASFTHAAAAKAFPKEEMIAKSTIPDCIMAIEKEDV
                     DVAVVPIENTIEGSVNITLDYLFHFSSVPVVAEIVLPIAQHLMVHPAHVSAWKSVQKV
                     MSHPQALAQCHTFLQAELYGVEREVTPSTAYAAKWVSNNPTELVAAIAPRMAANEYGL
                     EIVKENAQDLELNQTRFFVLSRKPVSILLPKEEEKTSISVILPNNMPGALHKVLSTFA
                     WRDIDLSKIESRPLKTSLGEYFFLIDVLSEGKETLVTNALDEITLLGGTANKLGTYHV
                     HRLQTT"
     gene            complement(23236..24525)
                     /gene="obgE"
                     /locus_tag="U0280_000309"
     CDS             complement(23236..24525)
                     /gene="obgE"
                     /locus_tag="U0280_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEM2270272.1"
                     /translation="MFVDQVKIYVKAGNGGDGMVAFRREKFVPNGGPAGGDGGKGADV
                     VFVVDEGLRTLVDFRFKRIFKAEHGEHGMSKSMHGRGAEDLVVKVPQGTIVKDIDTGE
                     IIADLVAHGQRAVIAKAGRGGRGNKRFATPANPAPELSENGEPGQERNVQLELKVLAD
                     VGLVGFPSVGKSTLLSVVSAARPKIAAYHFTTIVPNLGMVDAGDGRSFVMADLPGLIE
                     GASQGVGLGHQFLRHIERTRVIVHVIDMSGSEGRVPYEDYMAINNELEQYNLRLMERP
                     QIIVANKMDMPDAEENLNEFKTKIAEDIPVFPISAVTKTGLRELLLAIADKLETTPEF
                     PLNEILEQEDEDTVLYKYVAEEPDFEISREPDGTFVLSGAKIERLFTMTNFERDASIS
                     RFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD"
     gene            complement(24684..26177)
                     /gene="glpK"
                     /locus_tag="U0280_000310"
     CDS             complement(24684..26177)
                     /gene="glpK"
                     /locus_tag="U0280_000310"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEM2270273.1"
                     /translation="MEKKYILALDQGTTSSRAMIIDEEGEVIGVAQEEFDQIFPKPGW
                     VEHNANEIWASILAVIAGVLLKTNISSKEIAGIGITNQRETTVIWDKESGNPIYNAIV
                     WQSRQTEDICKQLRKDGYEDTIRSKTGLLIDPYFAGTKARWILDHVDGAQERAEKGEL
                     LFGTIDTWLVWKLTGGRAHITDYSNASRTLLYNIYDLEWDDELLKMLNIPKAMLPEVR
                     PSSEVYADTVPYHFFGEEVPVAGIAGDQQAALFGQGCFEKGMAKNTYGTGCFLLMNTG
                     EKAVRSENGLLTTLAWGIDGKVEYALEGSIFVAGSAIQWLRDGLRMVRQSSDSENYAS
                     RIESSDGVYVVPAFVGLGAPYWDSDVRGAVFGLTRGTEKEQFIRATLESLAYQTRDVL
                     YAMEQDSGISLKTLRVDGGASANNFLMQFQSDILGVPVERPENKETTVLGAAFLAGLA
                     VGVWKDKNEIKKHWKLDKRFEVEMKDEQREDLYEGWHKAVKAAQAFK"
     gene            complement(26252..27070)
                     /locus_tag="U0280_000311"
     CDS             complement(26252..27070)
                     /locus_tag="U0280_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM2270274.1"
                     /translation="MIDTSLATQFLGEVIGTAILIILGAGVVAGVSLKRSKAENGGWV
                     VITLAWGLGVTMGVYVSGYMSMAHLNPAVTIGMALAGAFPWNYVLPYILAQFIGAFIG
                     ATLIWLHYYPHWKQTEDKPTKLGVFATAPAIRHFTSNFFGEALGTFILVFGLLSLGAN
                     SFSDGLNPLVVGALIVAIGMSLGGTTGYAINPARDLGPRIAHFVWPISGKGGSDWGYS
                     WVPVIGPIMGGALGALGYNAIINGELGMWFWVFAVLFVLILILTMQLDKKKDLA"
     gene            complement(27436..27726)
                     /gene="rpmA"
                     /locus_tag="U0280_000312"
     CDS             complement(27436..27726)
                     /gene="rpmA"
                     /locus_tag="U0280_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEM2270275.1"
                     /translation="MLKFDIQHFAHKKGGGSTSNGRDSESKRLGAKRADGQFVTGGSI
                     LYRQRGTKIYPGTNVGRGGDDTLFAKTDGVVRFERMGRDKKKVSVYPEVQEA"
     gene            complement(27740..28057)
                     /locus_tag="U0280_000313"
     CDS             complement(27740..28057)
                     /locus_tag="U0280_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal-processing cysteine protease Prp"
                     /protein_id="HEM2270276.1"
                     /translation="MIQVDVMREDNQIISFTMSGHADFAEHGSDLVCAGASSIAFGMV
                     NAISEVRDFEPVIEESEGYLYYSVPADYVGDDVVQILLTGMENQLRSLAYSYPDHIKI
                     NSK"
     gene            complement(28076..28384)
                     /gene="rplU"
                     /locus_tag="U0280_000314"
     CDS             complement(28076..28384)
                     /gene="rplU"
                     /locus_tag="U0280_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEM2270277.1"
                     /translation="MYAIIETGGKQIKVEAGQEIYVEKLAGEVGDVVTFDKVLFVGGD
                     SAKVGVPFVEGATVTAKVEKQGRAKKLTVYKYKPKKNYHKKQGHRQPYTKLTIDAINA
                     "
     misc_feature    complement(28397..28475)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            complement(28541..29902)
                     /locus_tag="U0280_000315"
     CDS             complement(28541..29902)
                     /locus_tag="U0280_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HEM2270278.1"
                     /translation="MKKLVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGF
                     IQKIDRKVEAAFVDLGNNNKGFIHLKDIPESYDKTQGAKIPVQIVREGSATKLPLLTG
                     ILEFSGDLLIYLYGKEYISISKRIGDKIRLKKITETMVEENEAVIIRSNAEFATKEQL
                     QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFA
                     KMLEMLWPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWVVD
                     VNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE
                     ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETL
                     AFELERELSGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWEVADERVPFYQIGR
                     VEN"
     gene            complement(29955..30755)
                     /gene="minD"
                     /locus_tag="U0280_000316"
     CDS             complement(29955..30755)
                     /gene="minD"
                     /locus_tag="U0280_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HEM2270279.1"
                     /translation="MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLR
                     NLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQ
                     MVDLINQLRPDYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLL
                     EKEDIEPPKLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDP
                     VAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK"
     gene            complement(30758..31435)
                     /gene="minC"
                     /locus_tag="U0280_000317"
     CDS             complement(30758..31435)
                     /gene="minC"
                     /locus_tag="U0280_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HEM2270280.1"
                     /translation="MKKNVQIKGTKDGISIFLSDKASISELQQELTQLLADQKQNPYS
                     GEKLEVQVQIGNRLFSEEEEREISTIIHENSQMKISAFYSNVMSKDEAKKWKENDQIF
                     SMATIIRSGQVVQVPGDFLLIGDVNPGGQIRSNGNVFVLGNIKGIIHAGFEGNGNAIV
                     AGKFLYPSQVRIADKVYGFDSEDYKEVTETDLFSAFVNDAGEIVIDGIHKIRKIRPEI
                     SNFQGGR"
BASE COUNT         9129 a         6789 c         5322 g        10217 t
ORIGIN      
        1 agtttatcta acaaaaagga gagttgagta tggaatcagt atttatgttc ttttgtactt
       61 tattggtttg gttaatgaca ccaggtattg cattatttta cggtgggatg gttcgacgca
      121 aaaatgtgtt gagtacggcc atgtatagtt ttagttcgat ggcaattgta tctatccttt
      181 gggtgatagt tgggtattca ttagctttcg cccctggaaa cggctttata ggaagttttg
      241 actggacctt cctccataat gttggcttcg cagcaaacga tacttactca gatgctattc
      301 cacatattct attcatgatg tttcaaatga ctttcgcaat tttgactgta gctatcattt
      361 ctggggcatt tgcagaaaga atgaatttct ccgcttattt gattttcatt atcttatggt
      421 cgttacttgt ttattcccct gttgctcact gggtttgggg tgacggtggt tggttacgta
      481 atctcggcgc acttgatttc gccggtggga atgttgttca tattagttca ggtgtaacag
      541 gattagtcct tgcaattatg attggacgta gaaaagaagc cgattctgct tcacctcata
      601 atttaccttt agcgcttatt ggtggtattc tagtttggtt tggttggtat ggttttaatg
      661 ttggtagcgc ccttacaatt gataatgtgg ctatgatagc ttttgttaat acgaatacag
      721 ctgctgctgc aggtattatc ggttggggtt tggttgaatg gttgacgaat aaaaagccaa
      781 ctatgcttgg aaccatttcc ggagcaattg ctggtttagt atccattacc cctgccgctg
      841 gatttgttac cgttccaagt tcacttatca ttggtttcct cggcggagca ctatgcttct
      901 gggctgtgtt ctggttgaaa ggaaaagtaa aatatgatga tgcacttgat gcattcggac
      961 ttcatggaat cggaggtatt tggggtggta tcgcaaccgg ccttttcgcc acaacaaaag
     1021 taaatgaagc tggagcagac ggattattct acggcaatgc ttctctcgta gtaaaacaat
     1081 taatcgccat tggttcaacg gtagcatatg tggctatagc gacagcaata atcgtcgtaa
     1141 ttatcaaact atttttacca atccgtgtaa acgaagaaca agaatataaa ggacttgatt
     1201 tgacgctgca cggcgaaaaa gcatatcaag aataaaggag gcaacaatat gtctggatta
     1261 acaaaaatcg aaatcattac tcgcccaaac cgctttcact tgtttcaaaa agagcttgcg
     1321 aaaatcggcg tgagcggctt aactgtcaca aaagcactcg gtacagggtt agaaaaagga
     1381 tttatcgaac tttatcgcgg tacaaaaaaa gaaagcaata ttcatgaacg aatgaaaatt
     1441 gaaatcgttg tttccactgt cccggttgag gatgtacttc gtgtcgttaa agaaacgcta
     1501 cgtactggcg aacccggcga cggaaaagta tttatttacc cacttgcaga agtcgttaaa
     1561 atcagcactg gcgaaaccgg aatcgacgca ttacaagata aaccatcaaa atgaatagtt
     1621 aaaatggtga attaattaaa aatggggcct ctattctaaa aaatcaatga gaaatggcgt
     1681 ttaccccttc cgcttcttag cttttacact tataatgaaa aaggaagaac gtttagaaca
     1741 gataaggagg cgcgaaattc cctatgcgta aaatccccat tttcaccgtt ctagtagcta
     1801 tcctgctttt tggcggttat tatctttatc aacacgcttc gtcaaaagta gacgttacct
     1861 ttaatttcgt ggtggaccaa aaatcaaaaa acaataccat cactggcaaa attgatggcg
     1921 ctggaaacaa atcaattaca ctaccacttt ctgaagagag ttgggatgca gtaaaaaaag
     1981 ggaatcgcta caatgtggaa gccacttttt ataataaaaa taaaatcagc tccagtgaag
     2041 cgaaagaatt ggacggccca ttctggtcca atgattccaa tcgagggtta ttagttaata
     2101 aagtacacgt tgaaaacatt caagaattaa gtgatgattt ttaaaacgaa aagaaggtga
     2161 gcatttgcgc tcaccttctt tttttagttt gtttcttttt tcactgtctc gagtttcaac
     2221 tctgctagct gtgcttcact cacttcacct ggtgcatttg ttagcggatc cactgcacta
     2281 cctgttttag ggaatgctat tgtgtcacgc aagttatttc ggccagctaa gatcataacg
     2341 atacgatcta atccaagcgc gataccacca tgaggcggtg taccatattc taacgcatcc
     2401 attaggaagc caaattgttc tttcgctgat tcatccgtaa agccaagtgc acggaacatc
     2461 gattcttgca cttctttttt ataaatccgt aatgaacctc cgccgatttc atatccattt
     2521 aatacgatat cataagcttc tgccattact ttagaagagt ccgtttcaag aagtggaata
     2581 tcttcttctt ttggtaaagt gaatggatga tgcgcagata catagcgccc tgcttcttca
     2641 tcatattcaa ataacggcca atcagtcacc cataagaaag caagttcttc ttcattgatt
     2701 aagtttaact ctttaccaag tttattacga agcgccccca gtgatgctgc aacgatatct
     2761 gctttatcag ctgcaaatag taataaatcg ccatcttctg cttgtagaga tgcttttagt
     2821 tctgttgctt tttcttcagg gaagaattta gcaatcgggc ctttcagttc accagcctct
     2881 acttttaacc aagcaagacc ttttgccccg tagttagcaa caaaaacacc tagtgcatct
     2941 aaatctttgc gtgaaaaatt agctgcggct gcttttgcat tgattgcttt cacttctcca
     3001 ccattttcga ttgcggattg gaaaacttta aaatcaacat cttttacgac atcggataca
     3061 ttttgtaatt ctaaaccaaa acgaatatcc ggtttatcac tgccaaaacg atccattgct
     3121 tctttatatg tcatacgagg aaacggtttg tcgatagtaa tatttttcgc ttctttcact
     3181 acatctacta acatatcttc cgtaatcgct tggatttctt ctttcgttaa aaagctagtc
     3241 tctaaatcga tttgtgtaaa ttcaggttga cggtcaccgc gcaaatcctc atcgcggaag
     3301 caacgtacga tttggtaata tttatcaaac ccagcagtca ttagtaactg ttttaaaatt
     3361 tgcggagatt gtggcaatgc atagaagtta ccagggtaaa cacgacttgg tacaagataa
     3421 tcgcgtgcac cttctggcgt acttttcgtt aaataaggtg tttcaatatc aaagaatccg
     3481 agtgcatcca gcttattgcg gaacgttctc gttaccgtgt gacgcatttt gaaaatgttg
     3541 ttcatttccg ggcgtcgtaa gtctaaataa cggtatttca aacgcaattc atccgaaaca
     3601 ttcacaccat cttcaatata aaatggtggt gttttagacg aatttaaaat ggtaatttct
     3661 tctgctaaaa cttctacttt accagttgct aatttttcat tgatagcttt ttcaccacga
     3721 gcatggactg tccctttaat agtaacaaca aattcatttc gaacactatc agcgatttca
     3781 agcgcttctt tcgaaaattc aggattgaaa acaacttgga caattccttc gcgatcacgt
     3841 aaatcaataa aaattaaacc acctaagtcg cgtctttttt gcacccaccc atgaaggaca
     3901 acactttgac caatatgcgc ttcgtttaat tcaccgcagt aacttgtacg tttttccatt
     3961 ttaattctcc cccttggtgt ttattaattt ttctagtata gttgtttcag acacagcttc
     4021 ttgctcgcct gtttccatat ttttcaattg ataattgcct gtttgtaatt cttcttcacc
     4081 aagaataatg gtatatacgg cattttttct attggcgtct tttagttgtg ctttgaattt
     4141 acgttttaag taatcttttt ctgcactaat gccgttttgt cttaatttat ttacgagtgt
     4201 tacggctttt agttctgctt ccggttgcgc tgtaatcaca taaacctcta acggtttttt
     4261 cgcaggtatt ttgatgtccg ctttttctag cgccagtaaa atacgttcca caccaatacc
     4321 aaagcccatt cctggtgtat ctgggccacc aaactctctc actaaaccgt gatatcttcc
     4381 gccaccacaa agcgttgttt tcgcgccaaa tccttcttct acgctcataa tttcaaatgt
     4441 cgtatggtta taataatcta aaccacgaac catcgttgaa tcaatttcaa acggaatctc
     4501 tagcgcattt aagtattttt ttacattttc aaaataggca acagattctt catttaaaaa
     4561 gtccagaata gatggtgccg attgaattag tggattgtca tgatcttttt tacagtctaa
     4621 aatacgcagt ggatttttgt gtaaccgcac ttggcattcc gcacaaaatt catcaatatg
     4681 tggttcaaaa tgcgcaacca gggcttcccg gtgttttaga cgactttctt tatcaccaag
     4741 actattaatg accaatttaa tatttattag accaattttt ctgaaaaact ccattgctag
     4801 tgaaattact tctacatcaa tagaaggatc atcacttcca agcgcctcaa tgcccatttg
     4861 agtaaactgg cgttgtcttc cgccttgtgg acgttcataa cgaaacattg gctcattata
     4921 atacattttg attggttggc ttacttcgcc gtataattta tgctcaacaa aagcacgaac
     4981 aacagaagcg gtcccctctg gtctcagcgt taaacttctg ccacccttat cttggaaagt
     5041 gtacatttct tttgatacga tatcggtgga atcaccaacc ccgcgttcaa ataattctgt
     5101 atgttcaaaa acaggtgttc taatttcttc atattgatag ttctcacaca cttttttaaa
     5161 ctctgtctct aaaaaatgcc atttactaac ctcttctggc aaaatatctc gtgtccctct
     5221 cggtaattgc aaatccatca ccataagcct cctttttcac ttcaaaatat aaagaaaaac
     5281 ccccgtcact tgttataaaa aacaagggac gagagtttgt ttacacccgt ggtaccaccc
     5341 taattagaac tactaatgag tcctcactta agtcagttaa cgcctgaata cgttcttgct
     5401 tactgttttc aacaagaaac ctcgagagtg tcttttcaga aaatgtgact atctttatcc
     5461 tttcagccaa atgggataaa ttctctgtat agcatggatt tccttacttt tctctgtcgc
     5521 tagttttaaa tatgaattat tctaagatta ctaaaaacac actgaaaagt caacattttg
     5581 ccagtttttt tataaaaaac cactttctag ttccatgaaa gcgcatttta tggtaacatt
     5641 ttactgtcag ataaaagttt atgagtatat gggtggtgtt agctttaaat gaagaataaa
     5701 ttcattttta tcaccgttgt ctccatttta ttgattgcag caggtatttt tacaaccata
     5761 gcaatggcga acgcgaattc cgtagtcgtc aaagcagaag tcttgaatgt ccgcagcggt
     5821 cctggtttag catatgatgt aacgagccaa gccagaaaaa atgaagtact ccgggtagtc
     5881 ggtgaagaaa atcaatggta caaagttcag ttagataacg gaaatagcgg ttgggttgca
     5941 agctggttag tagaaaacac tgatgtcagc gcagcaagta acagtgtcgc tatcgtttct
     6001 tctgacggcg gtttgaatgt acgtgaaaaa ccaagtacct caagtaaagc acttggattg
     6061 ctaaataatg gtgatcaagt aacagttact agccaacaaa acggctgggc gcaaatccaa
     6121 tataacggta caagcgcatg ggttagctcc gattacttaa cgattcgtga atctgttaca
     6181 aaagtagatg aaagcgagct acaaacagta accattcgcg atgactccac taatattaga
     6241 aataagccaa gtcgtgatgg cgccgtcatc gaaaaagcaa attctggtca agggttcgct
     6301 attcaaggag tacaaggtga ctggtataag atacgtacga caagcggcga agaaggttat
     6361 gtagctaact gggtagtcga tgtttctgac aaaggtcaaa catccagccc tcgaagcaaa
     6421 acaaccaaat tatccgaagc aaccatcgtt attgaccccg gacacggtgg caacgatccg
     6481 ggcgctaaag ggtcaaatgg cacaattgaa aaagaaatga ctttgaagac agcaaaacaa
     6541 ttaaaacaaa aattagaagc tagaggcgct aaagtaatcc taacgagaaa cagtgataaa
     6601 tatgtctctc taaaaggaag aacaaatata gctgccgaaa ataatgcaga tgtgtttatt
     6661 agtattcact ttgatagctt agaagacgcg agcaaagggg taagcgggca aacaacttat
     6721 tattatgata atagtgataa atcgcttgct gaaagtatta atactacgct cgggaaagac
     6781 ctccctacta ctaatcgtgg tgcaagagtc ggcgattatt atgtagtcag agaaaattct
     6841 caaccagcag tccttctaga acttggttat ctaagttctg caaaagatga aagtaatatc
     6901 aactcagcat catacagaag ccaaatcgct gaatcagtaa cagatgggct atctaattac
     6961 ttctctaatt aaaaaaaaca atcattcagg agactgaatg attgtttttt tatttacgca
     7021 tttcatctga atcgagcatt attgttactg gaccgtgatt gacaattttc acatccatca
     7081 ttgcgccaaa tactccagtt tcaacaataa aacccgcttc tgtaagtttt tgattaaata
     7141 agtcatacag tgtttctgct ttttctgctg gggcggattt tgtaaagctt ggacgttttc
     7201 ctctacttac atcagcgtat aaagcgaact gggaaacgct aagaatcgcg ccgcctcgtt
     7261 ctgctaaaga aatattcatc ttctcggatt catcttcaaa aattcgtaat ccaacgattt
     7321 tttttgccat atagtccacg gtttctgggg tatctttatg ggtgaatcca actaataaac
     7381 aaagacctcc agctatttcg ctaatgactt cctcctccac actcacggaa gcttcataac
     7441 accgttgcag tagtacacgc atcgcttctc cactccttta gttcattaat cttctcactg
     7501 tataaacatc tggaatttgt tttattttat ccactacgcg ttgtaaatga ttaatattat
     7561 gaatctgtag cgtgaccact aatgttgcca tcttgttgtt atcaacctta gcattgacgc
     7621 cgttaatatt ggaagttaga ctgttaatca cttgtagaat atcatttagc aaaccgttac
     7681 gattatagcc ataaatttcg atgtctacat tatagtcatt tttcgcttgt gaatcagcat
     7741 cttcccagtc cacttcgatc agccgctctg gttcaatagc ttgaacattt gggcaatctt
     7801 gacgatgtat agaaatgcct cgaccttttg taatataacc aacgatagca tcaccaggca
     7861 ctggattaca acatctggat agtcgaatca atagattacc tactccttga acaactactc
     7921 ctgcattatg cttaatcttc agtttctcat tgttagcatc tgaattcgaa ggtttatttt
     7981 ctgattgcgt caataacttc tctgtttctg cttctaattc acgttctttt cgaagttttt
     8041 ctgttaagcg gttagctact tgtaaagctg taatgccatt ataaccaaca gctgcaaaca
     8101 aatcatcttc atgcgaaaaa tttagtttat cagctaattt acgaagattt tctggcgtca
     8161 taattttttt cgattcgaat ccaagttgtc taatttcttt ctcaactaaa tcgcgacctt
     8221 tttcgacatt ctcttctttt gcttgtcgtt tgaaaaattg tttaatttta tttcgcgctt
     8281 gcgaagtttg aactaattta agccagtcgc gacttgggcc gtaagaatgt ttggacgtta
     8341 aaatatcaat aatatcgccc gtttttaatt tatagtcgag tgtcacaatt tttccgttaa
     8401 ttttagcccc gattgttttg tttccgattt cggtatggac acggtaagca aaatcgagtg
     8461 gtacagagcc atttggtaac tcgtacacat cgccttttgg agtaaatacg taaacaacat
     8521 ccgaaaataa gtcgagtttc aagctttcca taaactcttc cgcattatcc gattcatttt
     8581 gatattctaa aatttctcgg aaccatgtta atttattatc gaatgaagtt ttggaattaa
     8641 ccactttgcc ttctttatag gcccagtgtg ccgcaacccc gtattcagcg atttggtgca
     8701 tttcgtgcgt tctaatttga acttcaagcg gttctccttg aggccctata accgtcgtgt
     8761 gaatcgattg atacatattc gacttcggca tcgcaatata atctttaaag cgacctggca
     8821 tcggtttcca gcgcgtatga ataataccaa gaacagcata gcaatccttg atactactaa
     8881 cgacaattcg aacagccaac aaatcataaa tttcgttaaa ttgtttattt tgttcgctca
     8941 ttttccggta aatcgaataa atatgttttg gtcttccaga aatatccgct tgaatattga
     9001 gttcatctag attttcattc acaccgtcaa tcacatcatg caaataacgc tctcttgcat
     9061 cccgcttttg tttcattaag tggacgatgc gataatattg ttgtggattt aaataacgca
     9121 gcgctgtatc ttccagctcc catttcactc gcgaaatacc caagcgatgt gcaagtggcg
     9181 caaaaatttc taatgtttcg ttcgcaattc tacgttgttt ttccacgggc aaatgtttta
     9241 atgtccgcat attatgcaaa cggtccgcca gtttgattaa aataacgcga atatcctgcg
     9301 ccatcgcaat gaacattttc cgatgatttt cagcttgttg ctcttcgtgt gatttatatt
     9361 taattttacc aagtttcgtt actccgtcta ctagcatggc aacttcactg ccaaaaactt
     9421 cttctaaatc cgctagtgtg actggcgtat cttccacgac atcatgtaaa aatccagatg
     9481 caacggtcga tggatccatt tttaattcga ctaaaatgcc ggcaacttga attggatgaa
     9541 taatatacgg ctcacctgat ttacgaaatt gctctttatg agaatcgcgc gcaaattcat
     9601 acgctttttt tacgagcgct agatgttcct gattcatata atgagaagcc atatcgatga
     9661 cctgctcagc tgtcagattt tgttctttcg ccatttacat tcaccctctt atctccatgt
     9721 catatataca acttaaaaac acccaaaaac tgagtgttct aaaaaatatt cttgtttaat
     9781 attatagcat gagccgtctt tgtttagaaa gcacttttcc ttgatttttc acattttctg
     9841 gcagttttca gctttttaat caaaaaacta cccctaaaat aataggagta gtttgatttt
     9901 tataattgca taaggattaa acggtcgtaa ccatttaatt ttttatgtcc ttctagctct
     9961 tttagttcga ttaagaaagc acaaccagca acaataccgc ctaattcttc tacaagtttg
    10021 atagttgctt cgattgttcc accagttgca agtaaatcat ctgtaattaa aacgcgttgc
    10081 cccggtttaa tcgcatcact atgcatagat aatttattcg taccatattc taaatcgtat
    10141 tccatttcga ttgtttcacg aggaagtttt cctggtttac gaacaggcgc aaaaccaatt
    10201 cctaacgcat aagcaactgg gcagccaata ataaagccac gtgcttctgg tccaacaata
    10261 atatcaattt ttaattcttt tgcgtattcc acaattttat ctgtagcaaa acgatatgct
    10321 tctccgtcat tcataagggg tgtgatgtct ttaaatacaa tccctttttt gggccaatcg
    10381 ttcacaatcg ctacataatc ttgtaaatct ttaatttcca ttttctagtt cctccgcatt
    10441 cgggtaaatt gatgtttcca tcattgattc catccaacta tgaagttccg tatagttaga
    10501 gtacaacagt ttttttcttg tagttatttc ttctaccttt tgttgataaa caagtgattc
    10561 gtccagatta cgtttttcaa caacttcatt aataataatc tgaccacttt ccattttagc
    10621 aaattctaaa tcaaaaaaca cctttgacat gaaatctatt tgctctttat tccagccaaa
    10681 cttttgcatt agccgtggtg tgtacttttt aattggaaat ggttggaatt ttttgatgag
    10741 actatacagc tcagcaaagg ctaaccggtc tggaattgct ggaatttgat tcccctctgc
    10801 tgcatcaaaa tggacaaaaa tacgctctgg tttcgtttca cgaacaatcg tttccactaa
    10861 ttcagtcttc gttggcatat ccgcaaaaac aagttcttct gtctggaaat ccgccgtaaa
    10921 atcagctttt tcatccacta aaatatagtt tttttctcca agcgtgccaa tcgttctttc
    10981 ttcaaaacaa acaaaaactc ttgattctgt ttgttcttgg agaatcctag cccactcaga
    11041 tttattacgt acatcgaaaa gttgccaatg cgagatgtga atgtccatca tgcgtagttg
    11101 tggttttttc acattattcc attcattgat ggataattcc ccaaccacgt ccacggctgc
    11161 atttggagaa attttttcta ccaaatcgcc tacaccaaat ccgatagaat ctaaagtggc
    11221 atcattttcc tctgtagcaa gcattgtttt taaatgggtt ttatctgccc caattctttt
    11281 cgttcctttt aaatgcatat tttctaacaa gaaaattggt ttagggttat ccattccaaa
    11341 aggagctaat ttttcaagtt gagcaataaa tgctacggaa acatccgcaa tatttatttt
    11401 ctcttctatt ttcaaggctg ggcggaaatc ttcttcagaa agaaaactcg cttcttcttg
    11461 taatttagct tctaattctg ttagattttc agcgggcaat gtaagacccg cagccattgg
    11521 atgcccacca aatgcagtca ttaaatcacg atgtttatca agcgcttgat acaaatgaaa
    11581 tgcatcgacg cttcgaccag atcctttggc aattccagta actggatcaa ttcctagtac
    11641 aatcgccgga cgagaatatg ttccaactaa tttagaagca actatcccta aaatccctgt
    11701 attccaaccc tctccgtaaa caacgagcac atttcctaat gtttcttttg cctcaattgc
    11761 ctccatcgcg agcttcgttg tatcaacaac tatttgttta cgttctttat tcgcatcatc
    11821 aatttcttct gctaagaaaa gtgcttcttc tggatcctct gttaaaagta aatccgccgc
    11881 tggatctgct gggcctaaac gaccaacagc attcagtcgt ggagctaaac caaagccaat
    11941 agtttcttcc gtagcctctt ctaacttcaa actagctttt ttagctaaca ctgaaagtcc
    12001 aaggttcgcg gattcgcgca attggcgcaa tccaagttgg acaagtaagc gattttcatc
    12061 tgttaaagaa actaaatctg ccaccgttcc aactgcaact aaatcaagca attctttcgg
    12121 ttcttctcca agtaatgcat gcgataactt ataagcaaca cccacacccg ctaattcatc
    12181 aaaaggataa gctgacttag gatgcttcgg atgaattact gcaacagctt ccggcataac
    12241 ttcccgtggt tcatggtgat ccgtcacaat aacatctaaa ccaatctctt tggcatgcgt
    12301 cattacttca agcgccgcaa taccattatc aaccgtaata attaaatccg ttccttggtt
    12361 tttagccata tcaaaagcag tgatatttgg accataacct tccgtaaaac gattaggaat
    12421 ataaaattca gcatttgctc ctaaatgccg cagtgttttc attaaaacgg caatactagt
    12481 aactccatct gcatcataat ctccgtaaac taaaatctgc tcatttagtt ctatcgctcg
    12541 cttaattcta gcaaccgcaa gatccatttc agcaaataaa aatgggtcat agctttcata
    12601 tttttctggg tggaaaaatt tatcgaattg tccttgcgtt gtaatttttc ttttccaaag
    12661 tagttttgca agtggaagcg aaatttttag ctgttctgct aattggcttg ctttgtcttc
    12721 cgccgcttcc tcgatattcc ataagtattt tgaatgaatc acattacccc acctctcaac
    12781 cttcctatta tatcgaaaat cactagaaaa accaagagga atcttctaac aaaaaacgcc
    12841 aacatatttt gtcagcgtcc cattttttat ttagttgtgt ctaccacatt ttctgtatca
    12901 cgtgtttcta ctttagatga atgagttttc attgctttag cagctgctag ttggcgttct
    12961 aattctgctt tttcggatgt taattgtttt acttgtttct tcattccacg cgatttcgcg
    13021 atatttaaga aaaagataat taaacaacca caaagaacag agcctaaaat aattaaaatt
    13081 aatggccact ccgcttgcgc aaataaaaag tttacttcta ctggatctac attaataact
    13141 gcaaaaatag caataatgag tgctaaaata atccccgcaa ttacttgcca ctgtacttta
    13201 ttttctttca tgttttttct cctccttgca caattatctt attatttacc cgtttctagg
    13261 ctattaaaaa cgaccgaatc tctttttatg aaattcggcc gttcgttttt atacgacagg
    13321 ttgcccgtta ttacgtggtt ttttcttttt aactgtgcta attgggcctt tttttcgtag
    13381 ttgtcgtgct ttgaatacgt accacaattg cattgccata aagatggagg agaatacact
    13441 cgaaacaagt ccaacaagta aggcgatgga gaagttcaga atagactcac taccaaatag
    13501 tacaagtgcc agtacggtga aaataaccgt taaaatggta ttaattgaac gagtgaatgt
    13561 ttggcgtaat gctttattaa ccgcattcgc aatttcttct ttcgttttga aacgttgcat
    13621 cttcatacta atatcccgta tccggtcggc ggtgactatc gtgtcattaa tggaataacc
    13681 gataaccgtc agcaccgcgg caatgaaggt taagtcaacc tccagccttg ttacactgaa
    13741 gaatatgaag atgataaatg cgtcgaatag taaggacaga atcgccgcaa tacccatata
    13801 aaattcaaac cggactgcaa tataaagtac aatcagcaca gacgccacac cgagtgccca
    13861 gaagccattt ttggcaagtt ctttaccgac agttggtgaa acggtactaa tgcttggttc
    13921 gtgcttatac ttgtcctcaa aatagttttt aaatttagct acatcatttt gtgataatgt
    13981 ccctttataa gaaacaacgg ctgttttaga ccctgatcct tggaaaacaa tatcatccga
    14041 tggcatatta atcgcatcta aatctttctt aatttgcgtt tctgtcagcg tttgattagc
    14101 tgttacttcc gctcgtgtcc cactggcaaa gtcaatacct agatttagcc taaatatgga
    14161 gagaataaca ataccgacaa taacaattgc agcaaaaata gataagaaca gacgatgatg
    14221 ttttacaaaa tcaaagcgat caaagtgtgt ttttaagcta aagctattaa ttccctcatg
    14281 taaattatga atatcttttc gtttaactgc aaagaatcct ggtttattgt taagccaatt
    14341 acttttcact aataagccta ataagaatct tgatccccaa acggctgtca agaagctgac
    14401 taaaatacta atgattagaa ccgtagcaaa acctttgatg gagcttgttc caaagtagaa
    14461 gagaaccgca gctacgataa gtgtcgtcaa gttaccatct aaaatcgcac ggaatgcttc
    14521 tttaccgccg acctcaaaag ccgctttcgt cgacctaccg actttgattt cttcttttat
    14581 ccgctcgtag gttattacgt tcgcgtcaac agccatacct atccccagaa tcaaacctgc
    14641 aatccctggt aaagtaagtg ttgcgttaag cagactcagt attaatagta ctaaataagt
    14701 gtatgcaact aaagtgatac aagcaataac gcctggtaaa cggtaaactg ccatcatgaa
    14761 aataaagata gcaatgaccc caataatacc agctaaaatt gtttcttgta acgcatcttg
    14821 cccaaattga gcaccaacag atgtcgagta aacttctttc attttaacag ggagtgcacc
    14881 agagtttagc aaatcagcta aatcttttgc ttcttccgtt gtgaaacttc cggaaatttc
    14941 tactttatct gtatcaagca cgctactaac gtttggtgct gataagtaag ctgggtcttt
    15001 cttctcgcgt tctgttttgt atttttgtcc ttctttccaa tctaaccaaa taactaattg
    15061 attgtcaggc gcttccgcta gtattgtttt tgttacacta gcaaatttat ctgcactttt
    15121 tagttttagc gtaacgattg ggttgttgct tgaatcgaaa gcttgtttgg caccgcccgc
    15181 aactaagtca ctaccattca tcatcatctt gtcatttgca tctctaaatg ataattgggc
    15241 tgtggttgat agcatttttc gtgcttcttc ctgatcagtt accccagcaa gttgaacacg
    15301 aatacggtta tccccttcga tttgaatact tggttcagct acacctaatg aattgatacg
    15361 cttgtcgagt gaagttaccg tatctgtcaa tgtttgtttg gatacagttc ctttgccatc
    15421 agctggtgaa acttcatata gaacttcgaa tcccccttga agatccaagc ctaggttgat
    15481 gttttgcata accatttttg cggtaccaaa tacagcacca aagataattg caactactag
    15541 aaagaaaata actatcttac tcttttttac catttctgtt tcgttcctcc ctcatctaaa
    15601 ccataacaaa tcccagtcta acaacaaata cttctatttt atgtatgaaa cccaagcatt
    15661 tgctaacagg ctgttaatct tccacatttg gttgaagcat actatctgct tgagaaacat
    15721 ggttattaga ttcttgttca gctgttgtca taataaattg cattaattgt ccaatattca
    15781 tttgcataac atcatttata cgttcatgca aagcaggggt tggttcattc ttccactttt
    15841 cttctgttaa aaatgcccaa atgtggcttg ccttgatttc tcggtaacct aaaatatgaa
    15901 aatcttccac ttttattgaa atcgctggcg ctaaatcttc ataccattcc gaaaatgtat
    15961 ccatatcaag tcgtcccctt tcttaaacaa taagcatatt cccattttat ctaaaaaaag
    16021 cttaaatggg aagtataagc tctattttta tggttaaaaa atgccatttc accgtttaaa
    16081 gggaaatggc atttttattt caagtattat ttgttgtctt ctacaacttc agtgtcatca
    16141 gaagttgttt ctgctacaac tggattagaa actgcattac ctttttcaag tacagttctg
    16201 attgcgttac ggtcaaaagt taatttgctg tttccgcatt tcaaaatgac tgtgccatct
    16261 tcaattgctt caacaatacc gtgaagtcca ccaatagtaa taattttatc accttttgct
    16321 aaactacttt gcatattttg tacttctttt tgacgttttt gttgaggtct gattaataag
    16381 aagtaaaaca aaacgatcat caagataatt ggtataaatg ttacaatacc gcccatattt
    16441 tccaactcct ttcgatactt tatatatatt tagaaatttt ttgcatcagg acgattgaat
    16501 ccatattgct caaaaaattc ttccctaaaa tcagcaagac gatcttccat aatagcgcca
    16561 cgaacttgct tcattaagtt taacagaaaa tgaagattat gataagttgt aagtcgaatt
    16621 ccaaatgttt cctcacaacg aatcaagtgt cgaatgtatg cacgtgagta atttttacaa
    16681 gtataacagt cacaattttc atcaattgga cggaaatcat gggtaaactt agcattttta
    16741 ataactaagc gaccactaga tgtcatacaa gtaccatttc gtgcaatacg tgtgggaaga
    16801 acacagtcaa acatgtccac tcctcgaatt acgccatcaa tcaatgagtc aggcgaacct
    16861 actcccatta gataacgtgg tttattagct ggtagtagtg gtgtcgtgtg ttccaaaacg
    16921 cgattcatca cgtcttttgg ttcaccaaca gacaatccac caattgagta tccagggaaa
    16981 tctagagata ccagatcttt cgcactttgc gcacgtaaat cttcgtaagc tccaccttgg
    17041 acgataccga acaaaccttg gtcttctggt ctaacgtgcg cttttaagcc acgttcagcc
    17101 cagcgagatg ttctttctac tgatttcttc atatattcat gcgacgctgg atatggtgga
    17161 cattcgtcaa aactcatcat gatgtcagat ccaagcgcat tttgaatttg aatcgctttt
    17221 tctggtgata ggaaaagttt gtctccgttt aaatggttac ggaaatgaac gccttcttct
    17281 ttgatatcac gcattttact caaactaaac acctgaaaac cacctgaatc cgttaagatt
    17341 ggttgatccc agttcataaa tttatgtagt ccgcccgctt ctcggataag ttcttctcca
    17401 ggacgcaacc ataaatgata cgtattgctt aaaataatac ctgcacccat ggcttttaat
    17461 tcttcgggtg acattgtttt taccgtcgca agcgtgccaa ctggcataaa cataggtgta
    17521 tcaaatgtgc cgtgcggtgt atggatttta ccaagacgag cacctgtttg tttatctgtt
    17581 ttaattagtt cataacgaat ggcagacatg tgttacctct ttcttattta ctctattcac
    17641 tagcataacg aaaattacca atgaaaacaa gcttttctat taattttttc gcaatttaat
    17701 gaataaacat ggcatcgcca aaactaaaga agcgatattg ttcttctaca gcatgattat
    17761 aggctgctaa aattttcgtg cggtccgata aagcagacac gagcataatt aatgttgatt
    17821 ttggtaaatg gaaattcgtt attagtgcat ctactgcctg aaaagtatac cctggggaaa
    17881 tgaagatctc tgtccaacct gattcagcca ctagtttgcc gtcatgacga ctcgcaattg
    17941 tttctaatgt tcggatagaa gtcgttccaa ctgcaacaac ttttccgcct tgtgctttga
    18001 ttttattaat tcgctcagca gattcttctg ttaaacgata aaattcagaa tgcattttat
    18061 gattggtagt atcttctacg tccactgggc ggaatgttcc gagccctaca tgaagcgtca
    18121 cgaaaatgat ttctacacct tttgcgctaa ttttcgccag taaatcttct gtaaaatgaa
    18181 ggcccgctgt cggcgctgct gctgaaccat tctctttcgc atagacggtt tgataacgat
    18241 cctgatcagc aagttgttct ttaatgtatg gtggaagtgg catctcgcca agttgttcta
    18301 aaacttcata aaaaatgcct tcataagaaa attctaaaat ccgaccacca tgctcgagct
    18361 cttccaagca aatcgctttt aaagcaccat caccaaaagt aatggtagca ccttttcgaa
    18421 ttcttttggc aggttttact aaagtttccc atgcattgcc ttctttttgt ttcaaaagga
    18481 gcacttcaat gtgcgcgcca gtttcatctt taataccatg cagccttgct gggagaacac
    18541 gtgtgtcatt taatactagt gcatcccctt cgtttaaata gctgataata tcagtgaaat
    18601 gttggtcttt tatgtcacct gactttttat caagcaccat tagccggctt gaagtccggt
    18661 ctaatagtgg ggtttgtgcg attaattctt ctggtaaatc aaaatcgaaa tcttctactt
    18721 tcatgcttta tacctctttt tcataactta ttcctaaatg gttatacgcc gtttcagttg
    18781 cgattcttcc gcgcggcgtc ctttgtagaa aaccgatttg tagtaaatat ggttcttgca
    18841 tatcttcaat ggtttctcgt tcttctccaa tacttgcagc gattgtatcc agtccaactg
    18901 gaccgcctct aaatgattgg ataattgtgt ggagcaattt ttggtcaatg gtatctaatc
    18961 ctcttggatc tacttgaagc aaagtaagtg cttctttcgc tagcttttct gttaccgttc
    19021 cgtttcctcg aacttgcgcg aaatcacgta cccgttttaa taaacgattg gcaatccgtg
    19081 gggttcctct tgaacgtcta gctatttcac gtgcaccaag atcatcaatc tttgtatcta
    19141 atatattcga agttctgagt acaatttctg ttaactgctc ttctgtataa aattccaagt
    19201 ggtcaattac gccaaaacga tctctgagtg gtgccgataa aagtcccgct cgtgtggtag
    19261 ctccaatcaa tgtaaatggt ggtaagtcta gacgaacaga gcgcgcagtt ggacctgttc
    19321 caatcacaat atccaaacaa taatcttcca ttgccggata taaaatttct tcaatcgctc
    19381 tcgataaacg atggatttca tcaataaata aaacatcccc tggctcaagg cttgttaaaa
    19441 ttgtcgccaa gtcacctggt cgttcaattg ctggtccact cgttgtttta atttgactcc
    19501 ccatttcagc tgcaataacc attgcaagcg ttgttttacc aagccctgga ggtccgtata
    19561 aaagcacgtg atccaaggct tcattccgga gtgtggcagc ttctataaaa actgttaaat
    19621 tattctttac tttgtcttgc ccaatatatt gtgaaaggtt ctgtggccgc aaactagttt
    19681 caaaagatac ttcttctgcg tctaccgttt cacttgaaat aattcgttca tccatgccac
    19741 aagctcctct ctattttgtc attaattgta gtgctagctt gatatatgcg tcgcttgtta
    19801 ggtcttcttc ttttgacaat tttggtatta ctttttttag ttctcgcgtg ctataaccga
    19861 gcgcttctaa agctaataca gcttcttcta attgcggaga aagtccagca accatatcgt
    19921 tttctggagc aacataaaca atttcgctcg cgacaacatc agctagtttg cctttcaaat
    19981 caagaatgat ttggcgtgct gtttttttac caacgcttgg aaatttggtt aaataaacat
    20041 cgtcttcgga ttcaatagca gaaatcagtg gaacgacatc gcctgaagca ataatagcta
    20101 gcgcgctttt tggtccaatg cccgaaacac tcaataattt tttgaataaa taacgttctt
    20161 ctgttgtttg aaaaccgaat agagaaatat tatcctcccg cacatgttga tacaaaaaga
    20221 cttgtgcttc tgtaccttct aatcgttgaa aggaaaacgg gtttcctgta attatttgat
    20281 agccgatttg tcctgcctcg acaacaatat attcgggtgt aatcgtcgta acggttcctt
    20341 ttatgtaatc gtacaattta ttcgtcctct cttcatttca cgtcatacat tatatgatag
    20401 cataaaacgg aacgtctgta ctagtttttg tttataaaag aaacgcttat ttagtttaca
    20461 taataatatt attgacacct taaatagatt gaatactttt tttaataacc gccacagaat
    20521 tcgcaaatgc ttctttttct ttctcatcta attttaaaga gatgatttct tttacaccat
    20581 tttgacttaa aacggctgga actccgatag ctagaccact ttctccgtat tcgccatcga
    20641 gcacacaaga caccgttaaa gcacgctggc tcccactaaa tatatggcga caaatctcga
    20701 caatcgtacc acctatgccg tattctgtgc agcctttttg gtggtagatt tcaaaaccag
    20761 tatcccgagc agtttcacct atttgtttca aatctagtgc ctcgcctagt ttttccacac
    20821 tatattcatt cactggttta ccataaatag atgaatggga ccacacgggg aattgagaat
    20881 ctccgtgctc accaaggata aaagcatcga tactttgagc agcaatatct agtttttctg
    20941 cgagtaaacg gcgtaacctt gttgtatcaa gccatacccc cgttccgagt actcgttctc
    21001 ttggtaaacc ggacaatttc cacacttggt atgtgatgat atcacacgga ttcgtcgcga
    21061 ttaagaaaat accattaaac ccgcctttca tcatctcggg cacaatgctt gaaacgattc
    21121 ttgaagtact tctcagttcg tctaaacgag tttgtccttc ttttaaagga ccagcagtta
    21181 cagtgattac agcgatatct acatctgcac aatcgctcgc atcacgaaca gtaatatcca
    21241 ttttaccggg cataaatgca gctgcatcag ccaagtcttt ccgattccct tctacacgtt
    21301 ctttatttaa atctacaaga attaactctt ccacaaattt ttgattaaca aatgcgtgtg
    21361 ctgcagctgt tcctacattt ccagctccaa ttatcattac tttacgcggt ttcatatttt
    21421 cttcctccta gtgattcata taaaacaccc ctattcaaat tgtccgaaaa aggggtgtgt
    21481 tgacttaatt tatctctgcg ttcgtataaa cttcttgcac gtcatcatca tcttcaagtg
    21541 cttctaacat tttatcaaat tgtgtttgat tattttctgc aacttcatta taaaccgttg
    21601 gaaacatgga taattcagca gtagcaaaag tgtacccggc ttcttgcaaa gcctctttca
    21661 cttccggaaa agtagccgga tcagtaaaaa tttcaaatac atcttcgctt acttccacat
    21721 catctgcccc tgcttcaata gcctccagca tgaattcctc ttcgtccaca tctaaacctt
    21781 cgcgtaaaat aacaagataa cctttacgat caaacatata gctcacacta ccggtttcac
    21841 caagacttcc accgttttta ttaaaagcta cacgaacatt ggtgctcgta cgatttttat
    21901 tatctgtaag cgcatggaca agaaccgcaa ttcctcccgg cgcatatcct tcataggtta
    21961 cttcatcata attttcgcca ctcgtattac cagcagcttt atcaatagct cgcttaatat
    22021 tatcgttcgg catgttgacc gcttttgctt tatccataac taatcggagt gacgggttta
    22081 aattcggatc aggacctttt ttcgctgcaa caaaaatttc tctcgctaat ttttggaata
    22141 ctttggaacg cttggaatct tgtgcatttt ttctaccttg aatattattc cattttgaat
    22201 gtcctgacat atatttcact ccttttagat ttagtaaagc ttttctccta caaattctaa
    22261 cgtaaaaagg gaggaatcgc aataaaaaag ttaccgcaaa aaattgcgat aactctttat
    22321 ttaagtcgtt tgtaagcggt gaacgtgata agttccaagt ttatttgccg ttccacctaa
    22381 aagtgttatt tcatcaagcg cattagttac gagcgtttct ttcccttctg aaagtacatc
    22441 aatcaagaaa aagtactcgc ctaatgaggt tttaagcggt cttgattcga ttttacttaa
    22501 atcaatatcc cgccaagcaa acgtagataa gactttatgt aacgcacctg gcatattgtt
    22561 aggcaaaata acagaaatag acgttttttc ttcttctttt ggtaataaaa ttgaaacagg
    22621 tttacgactt aaaacaaaaa atcttgtttg atttaattcc aagtcttgcg cattttcttt
    22681 gacgatttca agcccgtact cattcgccgc catgcgtggt gcaatagctg cgacaagttc
    22741 tgtcggatta ttactaaccc attttgcagc ataggctgta gaaggtgtaa cttcacgctc
    22801 tactccatat aattctgctt gaagaaatgt atgacactgg gcaagtgctt gtgggtggga
    22861 cattactttt tgcactgatt tccaagcgga tacgtgtgct ggatgaacca ttaaatgttg
    22921 cgcaatcggg agaacaatct ccgctactac agggacactt gaaaaatgaa ataagtagtc
    22981 cagcgtgata ttgacgcttc cttcaatcgt attttcaatt ggaacaacag ccacatccac
    23041 gtcttccttt tcaattgcca taatacaatc tggaatcgta ctcttagcta tcatctcttc
    23101 ttttggaaaa gcctttgctg ctgccgcgtg tgtaaaagat gctgctgggc ctaaataagc
    23161 aattttcatt ttcaactctc cttttatcgt agctaggaaa aaagcgtgcg ccaactaatt
    23221 ggcgcagcac tttatttaat ccataaattc aaattcataa tcaagcaggc gaacgatatc
    23281 gccgtcttta gcaccacgtt ttctaagcgc ctcatcgaca cccattgcac gaagctgacg
    23341 agcaaaacga ctaatagatg catcgcgctc gaagtttgtc atcgtgaata agcgttcaat
    23401 ttttgcacca cttagtacaa aagtaccgtc tggctctcta gagatctcga agtcaggttc
    23461 ttcagcaaca tatttgtaaa gaactgtatc ttcgtcttct tgttccaaaa tttcattaag
    23521 tggaaattct ggagttgttt ctaatttatc cgcaatagca agaagtaatt cgcgaagtcc
    23581 cgtttttgtt accgcagaaa ttgggaatac cggaatatct tcagcaattt ttgttttaaa
    23641 ttcgtttaaa ttttcttctg catctggcat atccatttta ttagctacaa taatttgtgg
    23701 acgttccatt aggcgcaagt tgtactgttc aagttcatta ttgatagcca tatagtcttc
    23761 gtatggaacg cgtccttctg agcccgacat atcaatgaca tgcacgataa cacgtgttct
    23821 ttcgatatga cgtaagaatt gatgccctaa accaacacct tgactagcgc cttcaattag
    23881 acccggtaaa tcggccataa caaagctacg accatctcct gcgtcaacca ttcctaagtt
    23941 tggaacaatc gtcgtaaagt gatacgcagc gatttttggt ctcgcagcag aaacaacaga
    24001 taatagggtt gatttaccga cacttgggaa accaactaaa ccaacatctg ctaacacttt
    24061 aagttctaat tgcacatttc gttcctgtcc aggttctccg ttttcagaaa gttctggagc
    24121 cggatttgct ggtgttgcaa agcgtttgtt accacgtccg ccacgtccag cttttgcaat
    24181 aactgcgcgt tgaccatgtg cgactaaatc agcaataatc tcacccgtat caatatcttt
    24241 tacaatggtt ccttgtggta ctttgacaac taaatcttct gcgccgcgtc catgcatact
    24301 tttactcatg ccatgttcgc cgtgctctgc tttaaagatt cgtttaaagc ggaaatcaac
    24361 caatgtacgc agaccttcat ctactacaaa tacaacgtct gctcctttac caccgtcacc
    24421 gccagcagga ccaccgtttg gtacaaattt ttcgcgacgg aatgctacca taccgtcccc
    24481 accattacca gcttttacat atatcttaac ctgatctaca aacataattt ttatattctc
    24541 ccgttcctta aaagtcttat ctttcattat aacgaataaa ctatacatct gtcactatat
    24601 ttatttctat ttccaaatat ttatttgttt tacataacaa aaaagcgcca aatgctttta
    24661 cacatttggc gcatcttaaa attttattta aaggcttgtg cagctttgac agctttatgc
    24721 caaccttcat ataaatcttc tctttgttca tctttcattt ctacttcaaa acgtttgtct
    24781 agtttccaat gttttttaat ttcgtttttg tctttccaaa cgcctaccgc aagtccagct
    24841 aagaatgccg cacctagaac ggttgtttct ttgttttctg gacgttctac cggaacgcct
    24901 agaatatcgg attggaattg cattaagaag ttattagcag aagccccgcc atccacacgt
    24961 aacgttttta agctaatacc agaatcttgt tccattgcat aaagcacgtc tcttgtttga
    25021 taagcaagag attccaatgt cgcacggata aattgttctt tttcggtacc acgagttaat
    25081 ccaaaaacag caccacgaac atcggaatcc cagtaaggtg cgcctaaacc aacgaatgct
    25141 ggtacaacat atacaccatc actagattca atccggctcg catagttttc agaatcgctt
    25201 gattgacgaa ccattcgtaa cccgtcacgt aaccactgaa tagccgaacc agcaacgaat
    25261 atactacctt caagtgcata ttctactttt ccatcaattc cccaagctag tgttgttaat
    25321 aagccgtttt cagaacggac tgctttttcc ccagtgttca ttagtaagaa acaaccagtt
    25381 ccataagtat ttttcgccat ccctttttca aaacaacctt gtccgaataa agcggcttgt
    25441 tggtcaccag caatacctgc aaccggcact tcttcaccaa agaagtgata aggcactgtg
    25501 tccgcataca cttcagagga aggacgaact tcaggtaaca ttgcttttgg gatattaagc
    25561 atttttagaa gttcatcatc ccactctaaa tcgtaaatat tataaagaag tgtccgagaa
    25621 gcattggaat aatctgtaat atgagcacga ccaccagtta atttccaaac taaccaagta
    25681 tcgattgttc cgaaaagaag ttctcctttt tcagcacgtt cttgcgcacc atctacatgg
    25741 tcgagaatcc agcgagcttt tgtacccgca aaatacggat caatcaaaag accagtttta
    25801 gaacgaatgg tatcttcata gccgtcttta cgtaattgtt tacaaatatc ttctgtttga
    25861 cgagattgcc aaacaatcgc attataaatt ggatttccgc tttctttatc ccaaataaca
    25921 gtagtttcac gttggtttgt aataccaatc ccagcaattt ctttagaaga aatatttgtt
    25981 ttgagtaata cgcctgcaat aacagctaaa atcgaagccc agatttcatt ggcattatgt
    26041 tcaacccaac ctggtttagg aaaaatttga tcaaattctt cttgtgcaac gccaattact
    26101 tctccttctt cgtcaataat catcgctctt gaactcgttg ttccttgatc cagtgctaaa
    26161 atatatttct tttccatgta aaattcctcc tctagtttta agtacaacga aagcccgaag
    26221 accttcgctt ggagctagtt attattctag cttatgctaa atcttttttc ttgtcgagtt
    26281 gcatcgttaa aataagaatt aaaacaaata atactgcgaa cacccagaac cacattccta
    26341 gttctccgtt aataatggca ttatacccta aagcacctaa tgcaccgccc atgattggtc
    26401 caataactgg aacccatgag taaccccaat cagatccacc tttgccagaa atcggccaaa
    26461 caaaatgcgc aattctcggt ccaaggtcac gagctgggtt gatggcataa ccagtagttc
    26521 caccaagaga catcccgata gctacgatta atgcgccgac aacaagtgga tttaatccat
    26581 ctgaaaaaga atttgcacct agtgatagta atccaaatac taaaataaaa gtacctaatg
    26641 cttcaccaaa aaagttagat gtaaaatggc gaatagctgg cgccgttgca aaaacaccta
    26701 gttttgttgg tttgtcttct gtttgtttcc agtgaggata gtaatgtaac catattagcg
    26761 ttgccccaat aaatgctccg ataaactgag caagaatata tggcaatacg taattccacg
    26821 ggaaagcacc tgcaagcgcc ataccaatag ttacagcagg gttaagatgg gccatactca
    26881 tatatcccga aacatataca cccattgtaa cacctagccc ccaagctaaa gtaataacga
    26941 cccagccgcc attctccgct ttagatcttt tcagtgaaac acctgctacg acaccagcac
    27001 ctaaaataat taggatagcc gtaccaataa cttcacctag aaattgtgtt gctaaacttg
    27061 tgtcaatcat cttttccaac tccttcttct tgcttatttg tatcaccgga attttaacac
    27121 ttactagtcc ccttacattc cgattatcaa ttaacttcaa aaaaagaatg acaatcaaaa
    27181 cgtaggcaca ctagtaccct tgcatcgttt cgattgtcat ctcttctcct gacattttaa
    27241 ttaacttgag tctatttaat catatcaaga aaacgctgtc aatcaaacga cttgtcctat
    27301 ttttcacaat gtctcttcat ctgcctcttt acatttaccc caattcacga gagttataac
    27361 cctttttaaa agaaattaat tcacaaagat gaaaacacaa aaaaaccgcc acaagtgacg
    27421 gttttaaatt tgtatttaag cttcttgtac ttcaggataa acgctaactt ttttcttgtc
    27481 gcgtcccata cgttcgaaac gtacaacgcc gtcagtttta gcgaataaag tatcatcgcc
    27541 gccacgtcct acgttagttc ctggatagat tttagtacca cgttgacggt aaaggataga
    27601 tccaccagta acaaattgtc cgtccgcacg ttttgcacct aaacgttttg attcagagtc
    27661 acgtccgtta gaagtcgaac cgccaccctt tttgtgcgca aaatgttgaa tatcaaattt
    27721 taacatgaaa ttccacctcc tatttggagt taatttttat atgatcagga tagctgtacg
    27781 ctaatgacct tagttgattt tccatccctg taagcaagat ttgcaccacg tcatctccga
    27841 cataatcagc aggcacagaa tagtaaaggt aaccctccga ctcttctatt acaggctcaa
    27901 aatcacgtac ttccgaaata gcattcacca ttccaaaagc aatagaggat gctcctgcac
    27961 ataccaaatc actgccatgt tcggcaaaat cggcgtgtcc actcattgta aaagaaatta
    28021 tttggttgtc ttctcgcata acatcgactt gaatcattgt tttcgtcctt tcaaattaag
    28081 cattgatagc atcaatagtt aattttgtgt aaggttgacg atgaccttgt tttttgtggt
    28141 agttcttttt cggtttatat ttataaactg tcaatttctt cgcacggcct tgtttttcaa
    28201 ctttagctgt tacagttgcg ccttccacga atggaacgcc aactttagcg gaatctccac
    28261 ctacgaatag aactttgtca aaagtaacaa catcaccaac ttcacctgct aatttctcaa
    28321 catagatctc ttggcctgct tctactttga tttgtttccc acctgtttca ataattgcgt
    28381 acatacttgc acctcctcat atactaagac tcgccatcac aggggattta cacgaagtaa
    28441 acacttgacc cagctctgtg cggttgtagc ttggtgcgct acaaacataa cagtaaaatg
    28501 atagcataag caagcagcct atgtcaacca attgttgatt ttagttttcc acccggccaa
    28561 tttgataaaa cgggactctt tcatccgcca cttcccaatc aattggcgca ttacttagcg
    28621 tattcaaatc taaaaaagta tctaaaacat cttctgtcgt aataatttgg atattgcttg
    28681 gctcattttg cataatccct gaaagctctc gttctaattc gaaagcaagc gtctctttgg
    28741 aagccacatg gcccgtcgca taacaaactg gacaaggcat cgttgtcgtt tctaaaaagg
    28801 attgctgttt tttgcgtctc gtcagttgta atagccctga ctgcgataaa gcagcaactt
    28861 gtgttgtaat atattcttcg cgagttttga tctctaacgc ttcataaagc gctgtgtagc
    28921 ccaattctga cattcctcca ataaaatcca ctaatatcat cccactcata ttacgtaacc
    28981 taatttgtcg aaggatttca ggaactgctt tgagatttac tgattctact gttttttctt
    29041 ttgctgtggt acctttaaat ttacctgagt ttacatcaac aacccacatc gcttctgttt
    29101 tttcaataaa taaagaagaa ccattactta aatgaaccac tggtcgtgcg agcctatcta
    29161 tttgagcttt gatacctagg tccgcaaata aatcagcgct tttctttatg atgatttgct
    29221 tatccggcca tagcatttct agcattttag caaactcaaa atcatccgta attacttctg
    29281 atggtgcgta tcgttgaatg aactgtttcg tactatttaa aattcccgaa gccactgata
    29341 atagtaagcc aggttttttc cgcttgctag cttcttttaa taatgtttga tgtttatctc
    29401 tcgcttgaac caaggcttgt tgcaattgct ctttcgtcgc aaattctgca ttagatcgaa
    29461 taattaccgc ttcattttct tccaccatgg tttccgttat tttctttaat ctgattttgt
    29521 ctcctattct tttagaaata gaaatatatt cttttccata caaataaata agcaagtcac
    29581 cagaaaattc cagtatacca gttaataacg gaagtttcgt cgcgctgcct tcccgcacaa
    29641 tttgaactgg aattttagca ccttgcgttt tatcatagct ttccggaata tcttttaaat
    29701 ggatgaaacc tttgttatta ttacctaaat caacaaaagc tgcttccact tttcgatcga
    29761 ttttttgaat aaatccataa taaatatcac caacttgaac tttttcagaa ggtcgtacaa
    29821 tttcaatatc tattaacaaa tcatcttcca ttgctgctat tcgtttttct ataggagccg
    29881 cacttactac tagctttttc atacaatcac cttttataaa gacccttcat cttaaagata
    29941 aagggtctaa ttttttattt cccgctaaaa agttgcttta agcgagcgaa aaatcccgct
    30001 ttttttgttt caatcgacat taaagggata gattctccaa gaatacgtcg agcaatatta
    30061 cgataacctt gtgaagcacg gttatttggt aacatagcga caggatcccc actgttcgaa
    30121 gagcgaataa cttcatcatc atcaatgata ataccaagta attcaattga taaatgtgtg
    30181 gtaatttcat caatatccat tacatcacca ttcatcatca tttgtgtacg aatacggtta
    30241 ataattaatt ttggtggctc aatatcttct ttttccagta aaccgataat tctatctgca
    30301 tcacgaactg ctgatatttc tggcgttgta actacaattg ctttgtctgc accagcaacg
    30361 gcatttttat agccagtttc aattcctgca ggacaatcaa ttaaaataaa atcatagtct
    30421 gggcggagtt gattaattaa atccaccatt tgttcacccg aaacagcatt tttatcagta
    30481 gtttgcgccg ctggaagcaa gaaaagtaaa tcatcaaaac gtttatcttt aatcattgct
    30541 tgatgaattt tacagcgacc ttctaccaca tctactaaat cataaataat tcgattttca
    30601 agacctaaaa caacatctaa attgcgaagg ccgatatcca tatcaatcaa gcacactttc
    30661 ttaccttgaa gagcaagtgc cgttcccaag ttagcagttg aagtagtttt tcctactcca
    30721 cctttcccag aagtaatgac tatagcttct cccatgttta acgccctcct tgaaaattag
    30781 aaatttcagg tctaattttt cttatcttat gtattccatc aattactatc tcacctgcat
    30841 catttacaaa tgcagaaaac aaatctgttt cagtgacctc tttataatcc tcactatcaa
    30901 atccgtatac cttatcggca attctaactt gtgagggata aagaaatttt cctgctacaa
    30961 tagcatttcc gttgccttca aagccagcat gaataattcc tttaatattc cctagaacaa
    31021 atacattgcc atttgaacgg atttgtcccc caggattaac atcgccaatc agcaaaaaat
    31081 cccctggaac ctgaacaact tgtccagaac gaataatcgt tgccatagaa aaaatttgat
    31141 cattttcttt ccattttttg gcctcgtctt tagacatcac attactataa aatgcactaa
    31201 ttttcatttg gctattctca tgaataatag ttgatatttc acgttcttct tcctctgaaa
    31261 acagacggtt accaatttga acttgcacct ctaatttttc accagagtat gggttttgtt
    31321 tctgatctgc aagcaattga gttagttctt gttgcaattc agatatactc gctttatcac
    31381 taagaaaaat actaatgcca tcttttgtgc ctttaatttg aacattcttc ttcatatacc
    31441 atttcacccc gcaacat
//
LOCUS       DASDXX010000008        30701 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.008, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000008 DASDXX010000000
VERSION     DASDXX010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 30701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30701
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.008"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(324..1085)
                     /locus_tag="U0280_000318"
     CDS             complement(324..1085)
                     /locus_tag="U0280_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2270281.1"
                     /translation="MKVQRIQAIENLIHEKGSISLDDLCEQFNVSKNTVRRDIAKLLQ
                     KNTIQKVYGGVVSVYNNPEEIRPFENRDTENHTEKQLIGKAAADFIEENDLIFIDSGT
                     TTSCLAAALPTDKDITIITNSLDVINFASEMDNVKLIVIGSTFKTSTKSFVGVENWGF
                     FEKYNITKAFMAATALSTTHGVMNSDILEYEIKRHMMEKAREKFLLVDHTKVDKSALL
                     TYGELAEFDWLVTSKDMAGGCLGYCEDVGVLVRLV"
     gene            1280..2746
                     /locus_tag="U0280_000319"
     CDS             1280..2746
                     /locus_tag="U0280_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEM2270282.1"
                     /translation="MADVRKLKNYIDGEWVESKTDKYEDVINPATGEVLCQVPISTRA
                     ELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEELARLITLENGKNLSEAR
                     GEVQRGIENVEFAAGSPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPC
                     WMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILEN
                     EIIKAVSFVGSKPVGEYVYKTGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAA
                     FGSAGERCMACAVVTVEEGIADEFLAALRTAAQNVKIGNGLDDGVFLGPVIREENQKR
                     TIAYIEKGLEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTIWKDEIFAPVLSVIR
                     VKNLQEAVRVANQSEFANGACIFTNNAKAIRYFREKIDAGMLGVNLGVPAPMAFFPFS
                     GWKSSFYGTLHANGKDSVDFYTHKKVVTARYSLKGYEE"
     gene            2759..3580
                     /gene="iolB"
                     /locus_tag="U0280_000320"
     CDS             2759..3580
                     /gene="iolB"
                     /locus_tag="U0280_000320"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HEM2270283.1"
                     /translation="MGKLLRKPLNERIAPGITFVQDINQANSPLSYVGFRLIEMEKGA
                     IYQEELTDLECCIVALTGKITVSEGDNIFAEIGTRANVFEKIPTDSVFISGGRTFQVK
                     ADTEKARVALCYSQANRDLPTTLIKASDNSIEQRGKYQNKRLVHNILPDVSEVASSLL
                     VVEVYTDGGNFSSYPPHKHDRDNLPAESLLEESYYHEINPEQGFIFQRVYTDDRTLDE
                     TMAVEHQNAVIVPEGYHPVGVPDGYDSYYLNVMAGPKRVWKFHNDPDHEWILERD"
     gene            3597..4574
                     /gene="iolC"
                     /locus_tag="U0280_000321"
     CDS             3597..4574
                     /gene="iolC"
                     /locus_tag="U0280_000321"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HEM2270284.1"
                     /translation="MNLNKHSERKFDLITVGRACIDLNAVEYNRPMEETMTFSKYVGG
                     SPANIAIGTAKLGLKVGFIGKISADQHGRFIEKYMRDLNINTDGMVKDTEGRKVGLAF
                     TEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKA
                     VSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVIIGTRDEFDMMENQVGG
                     KNEATKAHLFQHQAEIVVIKHGVEGSFAYTKAGETFQAKAYKTKVLKTFGAGDSYASA
                     FLYGLFSGESIETALKYGSAAASIVVSKHSSSDAMPTADEIKALIAQAE"
     gene            4587..6503
                     /gene="iolD"
                     /locus_tag="U0280_000322"
     CDS             4587..6503
                     /gene="iolD"
                     /locus_tag="U0280_000322"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HEM2270285.1"
                     /translation="MTEKTIRLTTAQALVKFLNQQYIEVDGEMAPFVDGIFTLFGHGN
                     VVGIGQALEEAPGHLKVYQGKNEQGMAHAAIAYAKQKNRQRIYACSTSAGPGSANLIT
                     AAGTALANNLPVLFLPADTFATRQPDPVLQQLEHESSTAITTNDGFQAVSRYFDRVQR
                     PEQLMSALIRAFEVMTNPASAGPATICIAQDTEGEAFDYPVEFFQKRIHYLNRQIPTK
                     RELTEAARLIKASKTPVIIVGGGARYSRAREELIALSEQTNIPLVETHAGKSTLEFDF
                     KNNLGGTGILGTLAANKAIRDADLVIGIGTRYTDFTTSSKTAFDPTTKFININVSRMQ
                     TYKLDAFQVVGDARATLAELAPLLQDYQTQFGNKIAAYKTEWLDERARLQNTKFNREA
                     FTPEIKVQFDQATLNEYADRLQTEFTQTEALITINDNVAPDSIVVCSAGSLPGDLQRL
                     WNPAVPDTYHLEYGYSCMGYEINGALGAKMAAAKKQEVYAIVGDGSFCMSHSELLTSL
                     QYGKKINIMLFDNSGFGCINNLQMANGSDSFFCEFRDSDNQIMQVDYAKIAEGYGAKV
                     YRANTKEDLISALEDAKTQSKTTLIEMKVLPKTMSEGYLNWWNVGVSEVSNKESIKQA
                     YEEKQANLKNARLY"
     gene            6635..7006
                     /locus_tag="U0280_000323"
     CDS             6635..7006
                     /locus_tag="U0280_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chaperone"
                     /protein_id="HEM2270286.1"
                     /translation="MEVFAEYLAEIENPDHRARTQEVLTWVAETFPDLKPEIKWNTPM
                     FTNNGTFIIGFSIAKQHMSVSPEVAGIERFEADIKEAGYSHTKGIFRITWAKPVDYDL
                     LAKIIEFNIQDKANYTSFWRV"
     gene            7100..7468
                     /locus_tag="U0280_000324"
     CDS             7100..7468
                     /locus_tag="U0280_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270287.1"
                     /translation="MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGY
                     LMSLAMVLAGILIICAYRNDFLIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISF
                     LMGLFIFTDYTRHQDTGEER"
     gene            complement(7492..8607)
                     /locus_tag="U0280_000325"
     CDS             complement(7492..8607)
                     /locus_tag="U0280_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEM2270288.1"
                     /translation="MAERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGE
                     YLLMVTPMFWAWVGQTMFFNRFGEKIKLPELYMLPQMFFLILMTASFDLTFSNTYYTF
                     LIGYLGIRLITVIQYFVISKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLV
                     MYLGIAVDIILPLFLAKTLRKVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLD
                     PYTIGYTLLGFLIICTLWASYFHSFEKIVNHHKETHGQYLIYGHFFIIISVMLLAANV
                     HLLFEGHLERNVLLLMLFGSVAVFFVSKQFVFAAHKKAEVTFSFWKDALLLLLLVGLF
                     FVNLYSDFPLFVSFVSIWVCALVDLGLQFGTSRSARM"
     gene            8738..9403
                     /locus_tag="U0280_000326"
     CDS             8738..9403
                     /locus_tag="U0280_000326"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM2270289.1"
                     /translation="MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPTEEDMFSC
                     FRLCPYDQVKVVILGQDPYHGPGQAHGLSFSVQKGVRIPPSLRNIYKELKTDLDIEPA
                     DHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILW
                     GNHAIKAASGITNPQHLLIKGVHPSPLAASRGFFESKPFSKTNAFLEEHGRKPIDWDL
                     NEQ"
     gene            9571..9870
                     /locus_tag="U0280_000327"
     CDS             9571..9870
                     /locus_tag="U0280_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270290.1"
                     /translation="MKHNFTEDDFVYGESWGLVHRGVLEDKEVERMKALRDKVVGKKG
                     VAQTTLKPIGSVRIDGEVYEARLKTGYLEVGKPIIAVGIDFGYVLVNEDIQEGEK"
     gene            9867..10811
                     /gene="floA"
                     /locus_tag="U0280_000328"
     CDS             9867..10811
                     /gene="floA"
                     /locus_tag="U0280_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463922.1"
                     /note="flotillin-like protein involved in membrane lipid
                     rafts; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin-like protein FloA"
                     /protein_id="HEM2270291.1"
                     /translation="MTMIGPIIIAVLIIIFLIVFFTLVPVGLWISALSARVPVGLGTL
                     IGMRLRRVVPSRVVKPLIKAVKAGLDLEVNQLESHYLAGGDVDNTVDALIAAHRANIE
                     LDFSRAAAIDLAGRDVLEAVQTSVTPKVIRTPEFTGVAQNGVEVKVITQITVQSNIER
                     IVGGAGEDTVIARVGEAVVSTVGETREHTDVLENPNSISKKVQEQGLGDGTAYTILSI
                     DIAEMRIGDNIKAKLDIEKANADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPR
                     ALSRALEEGNLGVMDYYKMENVQSDTAMRESIAHEDEK"
     gene            10846..11295
                     /locus_tag="U0280_000329"
     CDS             10846..11295
                     /locus_tag="U0280_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270292.1"
                     /translation="MDLSDFLNSGWESVLVVLGIVGVIINFLSKAGKGTEEENKKAPQ
                     PRPNLRSMHQASRTQTTKKPEKRKVSQGTFTQNKEQDKVIAEQKAAQQKMLREIRRES
                     DVAKGKNIIKSTSSHHKKARKLRGRLQEAIITKEILDKPVSLRKNHL"
     gene            11439..12122
                     /locus_tag="U0280_000330"
     CDS             11439..12122
                     /locus_tag="U0280_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEM2270293.1"
                     /translation="MKIIATRRKIFFAFIALMISFSVLFLPTTNASAATTYKMTTTAD
                     VNVRAADNTKGKVIGFYKKGTTVTFTAKTKNNWYKTTYKGKVGYVSGKCVTTYKAPVA
                     TTQSFTALNNEARKHIGKRYKIGATGPSCFDCSGYTQYVYSKGVKKSIPRTAKQQYAS
                     AKKIKAQELKKGDLIFFNYGKGVAHVGIYVGNGKMLNAQNNGVKYDTITSGYWKKYIA
                     GYGRVANLK"
     gene            12178..12603
                     /locus_tag="U0280_000331"
     CDS             12178..12603
                     /locus_tag="U0280_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2270294.1"
                     /translation="MQYKIKEMPLEELEPKVVEGLLEHKERLGYDIPKKDTEYIGFAA
                     LSEVGEIVGGVTAKISYGELYVSLLSVDPSTQGSGVGTELMAQIERYGRANNCHHISL
                     TTFSYQAPGFYKKCGFTELGRVKDFPIIGEEKYFFIKYL"
     gene            complement(12606..13406)
                     /gene="proC"
                     /locus_tag="U0280_000332"
     CDS             complement(12606..13406)
                     /gene="proC"
                     /locus_tag="U0280_000332"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM2270295.1"
                     /translation="MKKIGFIGAGNMGTAMIRGLAQANLDNSEAIIVGGRNLEKLKPL
                     EAAFTGLQITTDTEKLVEQADIIILAVKPYTIPEILTSVKEQLTPDKIIISVAAGVTI
                     QDLEELTSAKTKIVRVMPNTPALVGEAMSSISPNINVSSEEINEVTAIFTSFGEAEVV
                     SENLMDAVIGVSGSSPAYVYMFIEALADGAVLSGMPRDKAYKFAAQAVLGAAKTVLET
                     GEHPGKLKDMVTSPGGTTIEAVKSLENDGFRSAVINAVQAAANKNSSM"
     gene            13754..13966
                     /locus_tag="U0280_000333"
     CDS             13754..13966
                     /locus_tag="U0280_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270296.1"
                     /translation="MDEWWLIRIIKYIEIVSKAGHLTTKKEHFFDNCPQVSKSKQHGK
                     LALDTIFDAMFLMVESAINGVFISYN"
     gene            14481..15704
                     /locus_tag="U0280_000334"
                     /pseudo
     CDS             14481..15704
                     /locus_tag="U0280_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728127.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5011 domain-containing protein"
     gene            15821..16471
                     /locus_tag="U0280_000335"
     CDS             15821..16471
                     /locus_tag="U0280_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2270297.1"
                     /translation="MPKIAKGNRLENVAFEYIKNKITTGEYPTGYRVVEAKLSQELNM
                     SRTPIRRAIINLCHSGFLVHQYNRGAFVQNTEVTITEFFSRMKLVELLMYESTEKLIL
                     REDYIVVDDIIEIAEKVIQYEKNKEYELMRDTFEDFIVAFIGKLNNDYFNRIIQELWN
                     EINDNATKEVRLIIVSASDRIAEELANIIEILKSWNYGELKKCFQHIMNAMILIAF"
     gene            16516..17115
                     /locus_tag="U0280_000336"
     CDS             16516..17115
                     /locus_tag="U0280_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014952531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270298.1"
                     /translation="MLVIVAASVGYYFIKENERKTPQTIDYKTVETKRTDLSVYVSAE
                     GHIVKKENEWPDYEDFAVKIMVDELEINQIKEKQTADVYVEAVNNKVYKGKVVDINEK
                     GIINGSVTSYAVTIDLEDETKVKENMSVSADVLVALEKKILTIPIEAVNTDKADKHYV
                     YTVDANKQKKKIWIEVGKHNTKSIQVVKGLTEKQLVIIP"
     gene            17133..17807
                     /locus_tag="U0280_000337"
     CDS             17133..17807
                     /locus_tag="U0280_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270299.1"
                     /translation="MIQLFNISKSYQMGECTIKALDNVSLQIDQGEFLAIIGPSGSGK
                     STLMNILGILDRATIGEYYLNKTNLMRISDKKISRIRNRKIGFIFQQFNLMPRLTAFE
                     NVELPLVYRGVGKATRKKVVLKSLERVGLLDKEKHIPAQLSGGQQQRIAIARAIAGSP
                     ELILADEPTGALDSKTGEEVMTLLREIHREGNTLIMITHDKEIANQAERIIEIKDGKL
                     REWNKL"
     gene            17804..18970
                     /locus_tag="U0280_000338"
     CDS             17804..18970
                     /locus_tag="U0280_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270300.1"
                     /translation="MTLLQSIKLALKQLLSTKFRTFLTMLGIIIGVFSVILLVSIGEA
                     ISKNVSTQLGDMGSNLLTVNFYSDNPNDKFTYKDAKKLLNEDEIGSPEVMQTKEVRTS
                     EKTASNQVAGINEYYASIKNLELASGRFCSNVDVIYAQKVTIIGSEIAKTYFKEQNPI
                     GEYLQIAGARYMVIGVLKEKGESLFGSADKKLFIPISSAERLFKTDTVDLYYIQTKKV
                     EQVPAAVKVVKKKMSQFFPSNEDAYTVANQQQALDTFDSITGTLTIGLGAIAGISLLV
                     GGIGIMNIMLVSVSERTREIGIRKAIGASSGNILMQFLIEAVVLSLVGGCIGILLGIF
                     SAQIVTTTSSFEMYVSASTILLAVGFSMCIGIVFGVIPAQKASKKMPIDALRAD"
     gene            18989..19132
                     /locus_tag="U0280_000339"
     CDS             18989..19132
                     /locus_tag="U0280_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003760374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BH0509 family protein"
                     /protein_id="HEM2270301.1"
                     /translation="MEKEQQTDDTWVLVEIVSLITNVERQRLRELSYTELEEFYERVV
                     VEQ"
     gene            19203..19685
                     /locus_tag="U0280_000340"
     CDS             19203..19685
                     /locus_tag="U0280_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEM2270302.1"
                     /translation="MNESICKRDNGGAVVNFELEINATKAEVFALLTTNAGLAKWFNE
                     LEVGELGADGYLLFVMTPEEKITMPIRAFETNQKLAFEWDQDEVDFELNEITANKTRL
                     TFREQLTTITEHSPRDISGWHICLKKLQASAEGKIYDFNKTEFETLFAKYQKELNIEK
                     "
     gene            19854..20312
                     /locus_tag="U0280_000341"
     CDS             19854..20312
                     /locus_tag="U0280_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2270303.1"
                     /translation="MIVSEEQLFLNQHLRTKEEVLAFIADKAEEIGITTDSAQVERDL
                     WAREKEYATAVQQLIAIPHAKTEAISEAKLLFIRLTEPIDWESKEGFKAQAIFAILVP
                     ASEASQQHLKILSSVAVNLLEEAFQEQILTIKTEHELMDYLKDNLEGELI"
     gene            20309..20641
                     /locus_tag="U0280_000342"
     CDS             20309..20641
                     /locus_tag="U0280_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HEM2270304.1"
                     /translation="MKVVGVTSCIAGLAHTPMAAKALEKAGVKLGHDVKIEQQGAMGT
                     IDEITPAEVSAADVVIIAADKVIDGEERFKGKPVVRVKIGQCVANGEAVLSKVVAAIE
                     ARKQKEAN"
     gene            20645..21757
                     /locus_tag="U0280_000343"
     CDS             20645..21757
                     /locus_tag="U0280_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017471260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HEM2270305.1"
                     /translation="MKGKLNEAKDHLMSGISYALPVIIAGSLVVAVAKLIGIIGGVTN
                     LDAYADASGFYHYVYLFQNVGWAAIGLLNLVLAGYIAYSIAGKPALAAGFVGGVLATS
                     TNAGFLGAVVAGFFAGWLTNWVKKHVRITGPAASSLPLIILPLITVGATGILMSLILG
                     GPLGWLNQTLLDWVTEMCKNDTNVIILALILGAMIGFDLGGPVNKAAWMAGNALFMSG
                     IYLPSIMINVAICIPPLGYGIATLLRKKNYSTTFKEAGNGALIMGLIGVTEGAIPFTL
                     RSPGKLIPLNVIACAIGSAVTMGLGAYVKMPPIGGMYGFFTIGNGWAYLVGGLVGAFI
                     IGICANLFVNFTEEETAAADDAVDDIDISFDEIEIK"
     gene            21779..24406
                     /gene="mngB"
                     /locus_tag="U0280_000344"
     CDS             21779..24406
                     /gene="mngB"
                     /locus_tag="U0280_000344"
                     /EC_number="3.2.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosylglycerate hydrolase"
                     /protein_id="HEM2270306.1"
                     /translation="MAKTKVHVIPHSHWDREWYFTSSRSTIYLVKHLKEVIETLEAKD
                     DYHFYLMDAQSSLIEDYLRYCPEDKTRLEKLIAEKRLITGPWYTQTDQLVISQESIVR
                     NLLYGTRIAREMGHSMAVGYVPDAFGQGGNMPQIYKEFGISKFLFWRGVADNRLKQTE
                     FIWRGDDGTEMLAEQIPFGYYYGANIPENEAELKTYLDDQIGALEEKASTRNVYFPNG
                     LDQAPVRKNLPELVAKFNELDSTREYQIASPETFFADLEKDVTNLPVIAGELTEGKHS
                     RLHKSIFSTRADLKQANNEIENFLSNVLEPVLSISYSLGNRYPHNELAEIWKLMFENA
                     AHDSIGGCNSDTTNRDVKHRYKLASDLATNLLDLNMRLISEKIEQKQPFQFTVFNPLP
                     YEKSGVIKMTAYIPEDNFEIEDTQGNTLEYTILEKTDLTDYVLNQHIDLNPSKSIYLP
                     EKVFLATMLVNVNSLPALGYDTIYFNLEKETAEQEPTQSTMTKIENEFYEIQLAANNS
                     LTIHDKKAGRTYTDQMLFVENGDDGDSYNYSPPRKDLVISSEEAVVESLESSISSVNQ
                     TLTISFKLNVPYNLEERANGEKSNEMTIKTVISLRKNEELIRFDVQVANQVLSHRLCV
                     TFATEIASKFSTADQLFAPIQRPVRLPEMDVWEAEEWQEAPISIEAMQSFVSLHDEAH
                     GVAVMTEGVREYEIIGENYDTISLTLFRTFSHMGKTDLLYRPGRASGESIVATPDAQL
                     LGEINATFALTLFESSFDEADIAKKAKEYLSNPPVYQMSDFLNGRLIYVYRDEEKTLD
                     ATYSLALPTIDGAIISAVKKAEDADAFITRFFNPYLQKEITIPEVFQGKERHLDESES
                     NEKQTRLKHAKVQSYLFEK"
     gene            24439..26373
                     /locus_tag="U0280_000345"
     CDS             24439..26373
                     /locus_tag="U0280_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2270307.1"
                     /translation="MGYFAYKRLETLYGMLLDAGSHLSAQKLSQDLHISERTIRTDIA
                     KLTEFLESYGATITLTRGAGYKIEILDSLVFQAFQAEKNKPKNAGYFDLDNPEERVKY
                     EIFMLLSSGDYIKLEDLADTIFASRATISNDMKQVRKVIAVYDLTLVSKPGSGVKIIG
                     EEEKMRYALTALIASKNAPESYLETFFEWHKQKDKLQKLMTAVTDYFFATNIRFTDEA
                     LQNLLLHMMILVERIELGHTLEKFELTDVSEEEIAIATKLSTIIESLFEIDIADADKN
                     YLLLQIASKRILNVEDKEISEFDDYAYIEGMLNRIESHYFYHLQDDMQLKKDLVAHIH
                     SMLYRVKYHMTVKNPMTEHIKRYYPLAYEITLDAVESLKKDYPYDINQNELAYLALHI
                     GASLERNYQISYYRHKSALIVCGSGFGTARIVEAKVKSAVSNLDITKVVSIQEYNRFI
                     HIEEDIILSTVRIPEKNKPVIKISNIPTNEELKMLGAIIQEQTDPNRGFLSNFFTADF
                     FARSSMTNKTAILEEMVDSLRQQNIVGEGFLQSVLEREKLGSTVLGTGIAIPHPLGLM
                     AKETKIVIRILDKPIKWDQKQSVRAVFLLCISKNDYEEAINIYELLVELVREEYGEKL
                     SRLSDFHAFTALANDILKKK"
     gene            26500..26916
                     /locus_tag="U0280_000346"
     CDS             26500..26916
                     /locus_tag="U0280_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2270308.1"
                     /translation="MNRQTEFTLLIVGASLSILTFLGAMLYTIIFGLNTLMVADTFGY
                     YSSSEETIVLGIITFFSVVAAFFALGSAVFGFIGAFKVKSDGPKVKTLGVCFIVLGGL
                     QVFTIHGILFLIAGILTITKKEYKTNSKEDEGTKWE"
     gene            26907..27305
                     /locus_tag="U0280_000347"
     CDS             26907..27305
                     /locus_tag="U0280_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270309.1"
                     /translation="MGMITFLPIFFIFAIFLGLAAKVLLAIWIYKDAEQRGMNAILWC
                     LLMVFINVIIILVIYLIVRNKGEVMKQNLGLLISGIGIAVLNTLMAIMAFIFIIFFAV
                     NDGGMHNMMDGYNYDYDDGYEYDMDNFEDF"
     gene            27414..28421
                     /locus_tag="U0280_000348"
     CDS             27414..28421
                     /locus_tag="U0280_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEM2270310.1"
                     /translation="MDTVILITVIIVIMGLAFDFINGFHDIANAVATSISTRALKPRV
                     AIGIAAVMNFLGAISFTGVAESLTKSIVDPFSLNNGEFVVLCGLIAAVIWNLMTWLVG
                     MPSSSSHALIGAIAGASIASASSFSVLNWSGFTTIIIALIISPIIGFTVGYLIYSLFK
                     HLFHDKKLGKMNRRFRFIQIGTAAAQAYSHGTNDAQKTMGIITLALVASGLLKESAGI
                     PFWVQVSCAASMAIGSSVGGYRIIKTVGTKIMKITPVTGVASDLSSLSVIMTATLIHL
                     PVSTTQVIDSSIMGVGTANHKKEVNWRTGKNMVVTWFITLPLAGLLAAVVYWISAAIF
                     L"
     gene            28437..28817
                     /locus_tag="U0280_000349"
     CDS             28437..28817
                     /locus_tag="U0280_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2270311.1"
                     /translation="MKIEHVALWTTNLEQMKQFYVTYFGATANDLYENKTKGFTSYFL
                     SFEDGARLEIMSRTDVTGITTGENLGWAHIAISTGTKEAVDELTEKLRQDGFAIAGEP
                     RMTGDGYYESVVLDPEGNRIEITW"
     gene            28886..29278
                     /locus_tag="U0280_000350"
     CDS             28886..29278
                     /locus_tag="U0280_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HEM2270312.1"
                     /translation="MDIVTNKIVVEKYNFETIMEENEQFENKIELEVHEVEPVNGNVE
                     LMSKGKIFKITIPFLLVLENFRIDGRISRIIQLKDFFGDFSDLEAVDVEGLSNPLIDY
                     IKRLTYDVTEIAFDEPGVSLDFNANHNS"
     gene            29291..29713
                     /locus_tag="U0280_000351"
     CDS             29291..29713
                     /locus_tag="U0280_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HEM2270313.1"
                     /translation="MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVA
                     VISQDGKVVREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMG
                     WKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN"
     gene            29941..>30701
                     /locus_tag="U0280_000352"
     CDS             29941..>30701
                     /locus_tag="U0280_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2270314.1"
                     /translation="MKAKNNFFKQLISIMTVLSLLFMVLGIQGNNEVKAATLATPPAP
                     INQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLE
                     YLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP
                     LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN
                     YNQIEDISPLASLTSLHYFTAYVNQITDITPVANMT"
BASE COUNT        10426 a         5382 c         6339 g         8554 t
ORIGIN      
        1 catttacttc ctgctataaa gtttcctatg agaccgatgc aaaatggcgt ggagatttca
       61 aagttagaaa tacagggccg aaatcaggct attatgctca agacatttcg ttaaatagat
      121 atgcggaaaa tgaagacttt attgaatgtt cttttgatgc atcaattatg acaatgaata
      181 ttatttgtaa ggaaatcatt gtagaggaag taagtgtcat agaaaattcg tttttttgga
      241 aaaattatta aaataaagtt cagagtttgt gaatataaaa agaagtccca tttcatcaaa
      301 tggggcttct ttcatcacac aaactaaacc aacctcacca aaaccccaac atcctcacaa
      361 taccccaaac acccaccagc catgtccttc gacgtaacca accaatcaaa ttccgccagc
      421 tccccgtaag taagcaaagc cgacttatcc accttcgtat gatccactag caaaaatttc
      481 tccctagctt tttccatcat atggcgctta atctcatact ccaaaatatc cgaattcatc
      541 accccgtgcg tagtagacag cgcagttgcg gccataaaag ctttcgtaat attatatttc
      601 tcaaaaaatc cccaattctc cacgccaaca aatgatttag tactcgtttt aaaagtcgag
      661 ccaataacaa tcaatttcac attatccatt tcactcgcaa aattaatcac atctaggctg
      721 ttcgtaataa tagtaatatc cttatccgtt ggcagagccg cagcgagaca gctagtcgtt
      781 gtgccggaat caataaaaat caaatcattt tcttcaataa aatcagccgc cgcttttccg
      841 ataagctgtt tttctgtgtg attttctgta tcacgatttt cgaacggccg aatttcttcg
      901 ggattattat aaacagaaac gacgccacca tagacttttt ggatggtgtt tttttggaga
      961 agtttggcaa tgtctcggcg aacggtattt ttggaaacat tgaattgttc gcataaatcg
     1021 tcgaggctaa tactgccttt ttcgtgaatt aaattctcaa tcgcttgaat gcgttgtact
     1081 ttcattttaa attcatcctt tggcaaaatt attttaatta cactatttat aacacatgct
     1141 caaaaggtaa tcaactatga ttttttatgg tgaagttagt gacaaaaatt aaattgactc
     1201 tctaatttta ttggcttaag atggggttat aatcgattaa tggttaactt atgagtaatt
     1261 ttaagtggag ggatttttta tggcagatgt acggaaatta aagaattata ttgacggcga
     1321 atgggtcgag agtaagacag ataaatatga agatgtcatc aatccggcga cgggggaagt
     1381 gctgtgccaa gtgccgatat cgacacgcgc agaattagat caggcggctg tcattgctga
     1441 acaagctttt gaaaaatgga gccaagttgc tgtaccaaga cgtgcacggg ttctatttag
     1501 tttccaacag ttactcattc aacataaaga agaactagca agactgatta cactcgaaaa
     1561 tggtaaaaat ttatccgaag cacgcggtga agtccaacgt ggtattgaaa atgtcgagtt
     1621 cgcggctgga tcgccaacac taatgatggg tgattcgctg gcttcgattg caaccgatgt
     1681 ggaggcggca aattatcgct atccggtcgg ggttgttggt ggaatcgcac catttaactt
     1741 cccgatgatg gtaccatgtt ggatgttccc aatggccatt gcgcttggta actcgtttat
     1801 tttaaaacca tccgagagaa cgccactttt aatggagaaa ttggtggaat tattttctga
     1861 agcgggtctt ccaaaaggtg tattcaatgt agtgtacggt gcgcatgatg tggttaacgg
     1921 aattttagag aacgaaataa ttaaagcggt ttcttttgtt ggttctaagc cagttggtga
     1981 atatgtctac aaaacaggga gcgcaaattt aaaacgagtg caagccttaa caggtgcgaa
     2041 aaaccataca attgtgctta atgatgcgga tttagaagat accgtgacga atgttatttc
     2101 agcggcattc ggatcggcgg gtgaacgttg tatggcatgt gcggtcgtca cagttgaaga
     2161 aggcatcgcg gatgagtttc tagcggcact tcggacagcc gcgcaaaatg tgaaaattgg
     2221 aaatgggtta gacgatggcg ttttcctcgg tcctgtaatt cgcgaagaaa accaaaaacg
     2281 cacgattgct tatattgaaa aaggcttgga agaaggcgcg aaattaacag tagatggtcg
     2341 ggaaactgga ctttcagaag ggcactttgt tggtccaaca attttggaag atgttacgac
     2401 ggatatgacg atttggaaag acgagatttt cgcaccagtt ttatccgtga ttcgtgtgaa
     2461 aaatctccaa gaagctgttc gggttgcgaa tcaatctgaa tttgcaaatg gcgcttgtat
     2521 tttcactaat aatgccaaag caattcgcta ctttagagaa aaaatcgacg ctggaatgct
     2581 tggtgtgaat ttgggcgtac ctgctccaat ggcgtttttc ccgttttctg gttggaaatc
     2641 gtccttttat ggaacgcttc atgctaacgg caaagacagc gtggattttt acacgcataa
     2701 gaaagttgtc actgcgagat attcattaaa aggttacgaa gaataggagg gcgcaaaaat
     2761 gggcaaactg ttacgaaaac cgttaaatga aagaatagcg cctggcatta cgtttgtgca
     2821 ggatattaac caagctaatt ctccgctaag ttatgttggt tttcgcttaa ttgaaatgga
     2881 aaaaggtgct atttatcagg aggagcttac tgatttagag tgttgtattg ttgcgcttac
     2941 tgggaaaatt acagtgagtg agggtgacaa tatttttgcg gagattggga caagagcgaa
     3001 tgtctttgaa aaaattccga cagatagcgt gtttatttct ggcggacgga cgtttcaagt
     3061 gaaggcggac acagaaaaag ctcgtgtagc gctttgctac tcccaggcga atcgagactt
     3121 gccaacgaca cttattaaag ctagtgataa ttcgattgag cagcgcggaa aatatcaaaa
     3181 taaacgactg gtacataaca ttttgccaga tgtaagtgag gttgcgagca gtttgttggt
     3241 tgtggaagtg tatacggatg gcggaaattt ttcgagttat ccgccgcata aacatgaccg
     3301 cgataatctg ccagcggagt cgcttttgga agaaagttat tatcatgaaa ttaatccgga
     3361 gcaaggtttt atttttcaac gtgtctatac ggatgaccgg acgcttgatg aaacgatggc
     3421 tgtggagcat caaaatgcgg ttatcgttcc agaaggctat cacccagttg gcgtgccaga
     3481 tggatatgat tcatattatt tgaacgtaat ggctggaccg aaacgggttt ggaaatttca
     3541 caacgatccg gaccatgaat ggattttaga acgagactaa gaggaggatt tggagcatga
     3601 atctaaacaa acatagcgaa cgaaaatttg atttaatcac agtaggacgc gcttgtattg
     3661 atttgaacgc agtcgaatac aatcgtccaa tggaagaaac gatgactttt tctaaatatg
     3721 tgggtggttc cccggcaaat attgcgatag gaaccgcaaa actaggctta aaagtaggct
     3781 ttatcggcaa aatttctgct gatcaacatg gtcgttttat tgagaaatat atgcgtgatt
     3841 tgaatattaa tacggacgga atggtgaaag atacggaagg ccgcaaagtt ggcttggcgt
     3901 ttacggaaat taaaagccca gatgaatgca gtattttgat gtatcgcgaa aatgtagcgg
     3961 atttgtattt aacgccagaa gaaatttcgg aagattatat aaaagaggct cgcgtgctgc
     4021 tcatttctgg aacagcttta gcgcaaagtc catcgcggga agctgtttta aaggcagtta
     4081 gtttagctcg gaaaaatgat gtagccgttg cttttgaatt agattatcgc ccttatacgt
     4141 ggacaaacac cgaagaaacg gcggtttatt attcacttgt cgcggaacaa gcggatgtga
     4201 ttattggcac gcgcgacgaa tttgatatga tggaaaatca agtcggtggc aaaaatgaag
     4261 caacaaaagc gcatcttttc caacatcaag cagaaattgt tgtcattaag catggggtgg
     4321 aaggctcatt cgcatataca aaagcgggag aaacattcca agcaaaagca tataaaacaa
     4381 aagtgctcaa aacattcggc gcgggagatt cctacgcatc agccttctta tacggtttat
     4441 ttagcggtga aagtatcgaa acagccctta aatacggaag tgccgcggct tcgattgttg
     4501 ttagcaagca tagttcctca gacgcgatgc caacagctga tgaaatcaaa gcgctcattg
     4561 cgcaagcgga ataggaggag attatggtga ctgaaaaaac gattcgacta acaaccgcac
     4621 aagctttggt aaaattttta aatcagcaat atatcgaagt ggacggcgaa atggcaccgt
     4681 ttgtggatgg tattttcacg ctgtttggac atggaaatgt ggttggtatc gggcaagcct
     4741 tggaagaagc cccaggtcat ttaaaagtgt atcaaggaaa aaatgagcag ggcatggcgc
     4801 acgcggcaat cgcttatgca aaacaaaaaa atcgccagcg catctacgcg tgttccacat
     4861 cagcaggacc aggttccgcg aacttaataa cagcagccgg caccgcactt gcaaacaatt
     4921 tacctgtgtt attcctgccg gccgacacat tcgcaaccag acagcccgac ccagttttgc
     4981 aacaattaga gcatgagtcg agcacggcaa taacaaccaa tgatggcttc caagcagtct
     5041 ccagatattt tgaccgtgtg cagcgaccag aacaactcat gagcgccctg attcgcgctt
     5101 tcgaagtaat gaccaaccca gcgagcgcgg gaccagcaac aatctgcatt gcgcaagaca
     5161 cagaaggaga agcattcgat tatccagtcg aatttttcca aaaacgaatt cactatctta
     5221 atcggcaaat cccgacaaag cgtgaactaa ccgaagcagc tcggctcatc aaagcgagca
     5281 aaaccccagt tatcatcgtc ggaggtggcg cccgctattc aagagcacgc gaagaattga
     5341 tcgccctttc cgagcaaacc aacattccgc tcgtcgaaac acatgccggg aaatcaacgc
     5401 ttgagtttga cttcaaaaac aacctaggtg gcacgggaat cctcgggacg cttgctgcca
     5461 ataaagctat ccgtgacgcc gatttagtca tcggaattgg cacgcgctat accgatttca
     5521 caaccagttc caaaacggca ttcgatccaa caaccaaatt tatcaatatc aatgtcagcc
     5581 gcatgcaaac atacaaatta gatgccttcc aagtggtcgg tgacgctaga gcaaccctag
     5641 ctgaactcgc accactttta caagattatc agactcaatt tggaaacaag atagccgcat
     5701 acaaaaccga gtggctagac gaaagagcac ggctacaaaa caccaaattc aaccgagaag
     5761 catttacgcc agaaatcaaa gttcaattcg accaagcgac cttaaacgaa tatgcagacc
     5821 gcttgcagac cgaatttacg caaacagaag cacttatcac aattaatgac aacgtggcac
     5881 cggatagcat tgtcgtttgt tcggccggtt cacttcccgg agatttgcaa cgactctgga
     5941 acccagccgt accagacacc tatcacttag aatatggcta ttcctgcatg ggctacgaaa
     6001 taaacggtgc tctcggcgcg aaaatggccg cagcaaaaaa acaagaagta tacgccatcg
     6061 ttggcgacgg cagcttctgc atgtcacact cagaactact aacatcctta caatacggca
     6121 aaaaaattaa cattatgctc ttcgataatt ccggttttgg ctgcattaac aacctccaaa
     6181 tggcaaacgg cagcgacagt tttttctgcg aattccgcga tagcgacaac caaatcatgc
     6241 aagtcgatta cgccaaaatt gcagaaggat acggagcaaa agtctataga gccaacacga
     6301 aagaagattt aatcagcgca ctggaagacg caaaaacaca aagcaaaact actttgatcg
     6361 aaatgaaagt actaccaaaa actatgtcag aaggctatct taattggtgg aatgtgggag
     6421 tttccgaagt ttcaaacaaa gaaagtatca agcaagcata cgaagaaaaa caagcaaacc
     6481 tgaaaaatgc ccgactatat taagcaaaac aaaaacaagt ccatcaccgg acttgttttt
     6541 gttttgccac ttcaatagcc ccgccttgca tcacaccagt ttttctttat aataaaaagt
     6601 aactgtaaga ttatgttttt taggaggaaa taatatggaa gtttttgcag aatatttagc
     6661 tgaaattgaa aatccggatc accgcgcgag aacacaagaa gttttaacat gggtggcgga
     6721 aacttttcca gacttaaagc cagaaatcaa atggaataca ccgatgttta caaataatgg
     6781 cacgttcata atcggcttct ctattgcaaa acagcatatg agcgtttccc cagaagtggc
     6841 tggaatcgaa cgtttcgaag cagacattaa agaagcgggc tatagtcata cgaaaggtat
     6901 tttccgaatt acgtgggcta aaccagttga ctatgaccta ctagcaaaaa ttatcgagtt
     6961 taatattcaa gataaagcaa attatactag tttttggcgc gtttaagtga tttttagtta
     7021 ctttgtcgcg tagtaaatcc agatttttta tgccataatt aataagctaa aatgtatttt
     7081 tataaaagag tggtgtgaaa tgcgtatttt ttgtgggatt atgtcaatcc aagcaggctt
     7141 tattggtgct cttgctgaaa tactaagtcc ggacagtaaa aaaaataact tattcatgat
     7201 accggaagat cttgcggcat catcaggcta tttaatgtct cttgcgatgg ttttagcggg
     7261 aattctaata atttgtgctt atcgaaatga ttttctaata ttcatggcac taattttatg
     7321 gctctttgga cttatttttg ggctcatttt caccccgagt tattcgggtt tttatttccg
     7381 cccaatcgta tgtttaataa gctttttaat gggcctattt atttttacag attacacaag
     7441 gcaccaagac acaggcgagg aaaggtgagc gaaatgctca tcttttttta tttacattcg
     7501 tgccgaccgc gaagtcccaa actgcaaacc aagatccacc agcgcacaaa cccaaatact
     7561 cacaaaacta acaaatagag gaaaatcact atacaaatta acaaaaaaca gccccactag
     7621 aagtaacaat aacaacgcat ctttccaaaa agaaaatgtc acttcggcct ttttatgagc
     7681 agcaaaaaca aattgtttcg aaacgaaaaa cacagctaca gaaccaaaca acatcaataa
     7741 caaaacattg cgttccaaat gcccctcgaa caacaaatgc acattcgccg caagtaacat
     7801 cactgaaata ataataaaga aatgtccata aattaagtac tggccatggg tttctttatg
     7861 gtggttgaca attttctcaa agctatggaa atacgatgcc caaagcgtac aaataattaa
     7921 aaagccaagc aacgtgtacc caatcgtata gggatcaagc gtgtgcccaa ctaaaatagt
     7981 cgtaatcgca acaatacttt caccaaatgt gatgataaca aataatccaa aacgttccgc
     8041 aagatgtgga aaatcaaccg gcactttgcg caatgtttta gctaaaaata acggtaaaat
     8101 aatatcaact gcaatcccaa gatacatcac taaataacgc gcaaatcctt caaaaaacac
     8161 cgaagtcgca gttgtcaaaa cacctagtag aaaaacactc ccaagaagta tcgccacttt
     8221 ccgcgcattt cccgtcaact gcttactaat aacaaaatac tggataaccg taattaagcg
     8281 aatacctaaa taaccaatta aaaaagtata atacgtattt gaaaacgtta aatcaaaact
     8341 cgctgtcatc aaaattaaga aaaacatttg cggcaacata taaagttcgg gtagtttgat
     8401 tttctcaccg aagcgattga aaaacattgt ctgcccaacc cacgcccaaa acatcggcgt
     8461 gaccatcaat aaatattcgc caaaataaac agctgtttta tccggatgat tatcgacgct
     8521 aagtaacaga tgcgtcgttg aagcaacagc agttacgaat attaaatcaa aaaatagttc
     8581 tagccaagaa acttttcttt ccgccacaat ctcaccccat tattatttct tttttcaagt
     8641 ataccacgtg aatccgcctg ccttttgaca gttgctcgcc gtgaaaagta taatggaagg
     8701 acaaaatcat ggaactactg agatgggaga attaaaaatg gtaaaaacat gggaagaatt
     8761 tttaaaacaa gaagcgaaac agccttattt tatagaatta atggaagcag ttaaggacgc
     8821 gagagcaaag gggaatgtct atccgactga agaagatatg ttttcgtgtt tccgcttatg
     8881 tccgtatgat caagtgaaag ttgttatttt aggacaagac ccgtatcatg gtcctggaca
     8941 agcgcatggc ctaagcttct ccgtgcaaaa aggggtgcga attccgccaa gtcttcgtaa
     9001 tatttataaa gaattaaaga cagacttaga tattgaacca gctgaccacg gctatcttgc
     9061 caaatgggca gagcaaggcg tacttttaat gaacacgagt tggagcgtgg aagaaggcaa
     9121 agctggtagc cacaaaaaac taggctgggc aacatttaca gatcacgttt tagaagaact
     9181 aaataattac gacaaaccac ttgtatttat tttatggggg aatcatgcta taaaagccgc
     9241 aagtggcatc acaaacccgc aacatttact tattaaagga gtacacccat caccgcttgc
     9301 cgcgagtcga ggcttttttg aaagcaaacc attttcgaaa acgaatgcat ttcttgagga
     9361 acatggaaga aaaccaattg attgggactt aaacgaacag taaaaaaata cgttattaca
     9421 aaattttgtt ttttctatta tatagttttt tacaaaagtg aaaaaattta cataattcgc
     9481 ctaaaagctt tttacataag gtttctttca tgttatggtt attataggag aaagtaaaat
     9541 ttaaaaaagt tcctaaagaa ggtgactagt ttgaagcata attttacaga agatgacttt
     9601 gtttatggag aatcatgggg actcgtgcat cggggggttt tagaggacaa agaagtagaa
     9661 agaatgaaag cgctacgaga caaagtagtg ggtaaaaaag gcgtagcaca aacgacactt
     9721 aagccgatag gtagtgtcag aatagacgga gaagtctatg aagctcgctt gaaaacaggt
     9781 tatttggaag ttggaaaacc aataattgca gtaggtatcg atttcggata cgtactagtc
     9841 aatgaagata tacaggaggg agaaaaatga caatgattgg acctattatt atcgcagtat
     9901 tgattatcat ctttttaatc gtatttttca ctttagtacc agtggggtta tggattagtg
     9961 cattatccgc acgtgtacca gtaggactag gaactttaat cggaatgaga ttgcgtcggg
    10021 ttgtaccttc tcgcgttgta aaaccgttaa ttaaagcagt aaaagctgga cttgatttag
    10081 aagtaaacca acttgaaagt cactatttag caggtgggga cgtggataac acagtagatg
    10141 cgttaatcgc cgcacaccgc gcaaatattg aattagattt cagccgtgca gcagcaattg
    10201 accttgctgg acgtgacgta cttgaagcag tacaaacttc cgtaacacca aaagttatcc
    10261 gtacacctga atttactggt gtggcacaaa acggggtaga agtaaaagtt attacgcaaa
    10321 ttaccgtaca atccaatatt gaacgtatcg tcggtggtgc tggggaagat acagttatcg
    10381 ctcgtgtcgg tgaagccgta gtttctacag tcggtgaaac gagagaacat acagatgtac
    10441 ttgaaaatcc aaacagcatt tcgaaaaaag tccaagaaca aggacttgga gacggaactg
    10501 cttacactat tttatccatt gatatcgctg aaatgcgtat tggtgacaac attaaagcaa
    10561 aactagacat cgaaaaagcc aacgcggaca tggaagttgc tcaagcagct gcatcgaaac
    10621 gtaaagcaga agcgattgcc ctagaacaag aaaacagagc agcggttgta gccgcagaag
    10681 cagaagtacc acgtgcgcta tctcgcgctt tagaagaagg taaccttggt gtaatggatt
    10741 attacaaaat ggaaaatgta caatcagata cagctatgcg cgaatcgatt gcacacgaag
    10801 acgaaaaata aaccttgatc ttttgcaaga aagaaggtgt tttcaatgga tttaagtgat
    10861 tttctaaata gtggttggga aagtgttcta gttgtccttg gtattgttgg tgtcattata
    10921 aatttcctta gcaaggccgg taaaggcaca gaagaggaaa ataagaaagc gccacaacct
    10981 agaccaaatt tgcgttcaat gcaccaagca agccgtacgc aaaccactaa gaaaccagaa
    11041 aaacgcaaag tgtcacaagg gacattcaca caaaataaag aacaagacaa agtaattgct
    11101 gaacaaaaag cagcgcaaca aaaaatgcta agagaaatcc gccgagaatc ggatgtggca
    11161 aaagggaaaa acatcattaa aagcactagt agtcatcaca aaaaagcgcg taaattgcgc
    11221 ggaagattac aagaagcgat aattacgaaa gaaatccttg ataagcccgt ttctttacgg
    11281 aaaaatcatc tataaaagca aacccaagaa ctagtttctt gggttttttg tttctgtgtc
    11341 aaaactgtta cataataacg ccaagtttta aaatccctgt attacaactg taacattgac
    11401 ctgctatgct gtgtgtatat aaaaaagggg tgcgtggatt gaaaataata gcaacgagaa
    11461 gaaagatttt ttttgcgttt atagctttaa tgatttcttt ttcagtacta tttttaccaa
    11521 caactaacgc ttcagcagcg actacatata aaatgacgac aacggctgat gtaaatgttc
    11581 gcgcagcaga caacaccaaa ggtaaagtca tcggttttta caaaaagggt acaacggtta
    11641 ctttcactgc taaaacaaaa aacaactggt ataaaacgac atacaaaggc aaagttggtt
    11701 atgtttcagg taaatgtgtg actacatata aagcacctgt tgcaacaacg caaagtttta
    11761 ccgcattaaa taacgaagca agaaaacaca ttggcaaacg ctacaaaatt ggcgctactg
    11821 gcccaagctg ttttgattgt tcaggttaca cacaatatgt atactctaaa ggagttaaaa
    11881 aatccattcc tcgtacagcg aagcaacaat atgcctctgc taagaaaatt aaagctcaag
    11941 aactaaaaaa aggtgatttg attttcttca attatggtaa gggtgttgca catgttggga
    12001 tttatgttgg aaatggcaaa atgcttaatg cgcaaaataa tggcgtaaaa tacgacacaa
    12061 tcacatctgg ctattggaaa aaatatattg ctggatatgg acgagtagca aatttaaaat
    12121 aattttactg agcgtcactt tttagtgatg cttttttgta tgaaggagga gttagggatg
    12181 caatataaaa taaaagaaat gccactggaa gaactagaac ctaaagtagt agaggggctt
    12241 ttggaacata aagaaagatt aggttatgac attccaaaaa aagacacaga gtatattggc
    12301 tttgcggctt taagtgaagt aggggaaata gttggaggag ttacagcgaa aatcagctac
    12361 ggagaattat atgtgtctct tctttctgtt gatccaagca cacaaggatc gggcgtgggt
    12421 acagaattga tggcccaaat agaaagatat ggtagagcaa ataactgcca ccatatctcc
    12481 ttaacaacat ttagttacca agccccagga ttttataaaa aatgcggttt tactgagctt
    12541 ggacgtgtaa aagattttcc tataatagga gaagaaaagt acttttttat taaatattta
    12601 tagaattaca tcgaactatt tttgtttgca gcagcttgaa ctgcattgat aacagcggaa
    12661 cggaaaccat cattttctag tgatttcact gcttcaattg tagttccgcc gggagaagta
    12721 accatatctt taagtttacc tggatgttcg ccggtttcta gaaccgtttt tgcggcacct
    12781 agcacagctt gtgcggcgaa tttatatgct ttatcgcgag gcatgccact taggacggcg
    12841 ccgtctgcta aagcttctat gaacatataa acataagctg gtgaagaacc gctgacgcca
    12901 ataactgcat ccatcaaatt ctcggaaaca acttccgctt ctccaaaact agtaaaaata
    12961 gctgtaactt cattaatttc ttcagatgat acgtttatgt taggcgaaat agatgacatt
    13021 gcttcaccga caagcgctgg tgtatttggc atcacacgaa caatttttgt ttttgcggaa
    13081 gtgagttctt ctaaatcttg gatagttacg ccagctgcta cagaaataat aattttatca
    13141 ggtgttagct gctcttttac cgacgttaaa atttctggga tagtgtaagg tttcaccgct
    13201 aaaataataa tatctgcttg ttctacgagt ttttcggtat cggttgttat ttgcaggcca
    13261 gtaaatgccg cttccagtgg ttttaatttt tcgagatttc gaccaccaac aatgattgct
    13321 tcgctgttat ctaaattcgc ttgtgctaag ccccgaatca tcgcagttcc catattacct
    13381 gcgccaataa agccgatttt cttcatttta ttcgccccta acaaaattct ttttttctat
    13441 tatctcatgt tacacggctt tgtccagttt ttgctgaagg ctatcattgt gtcacagagg
    13501 cttattctaa atacagcgat attaattttg atgaatcatc tcgtcgaaag tagtggaaaa
    13561 ggtattatcg ccaaatttta tctatttcta atggtttcta attggcagtt tgcagtagaa
    13621 aaaaatatta gattactagc taaaagtatc ttagtgaaga aaactaagat attttttatt
    13681 ttcgattgta ttttttgttt gggaaacccg attttgtgtt tgatcagtaa acacagtcga
    13741 aaagaatgtt catatggatg aatggtggct gattagaata attaaatata tcgaaattgt
    13801 gtccaaagct ggtcacttga caactaaaaa ggaacatttt tttgataatt gtcctcaagt
    13861 aagtaaatct aaacaacatg gaaaattagc tttggatact atttttgatg ctatgttctt
    13921 aatggttgaa agcgctataa atggcgtttt tataagctat aattgatatt ggataacagt
    13981 tccaactaca taatatagcg aggtgaaaac gatgaatttc tttctacaat tattaggtaa
    14041 cttctctgga ggtttaaatt tcccagacgt aacagaagta ctaaacaact taatcaaagc
    14101 aatttttggt tgatttcaaa aaaataaaac gtaaaggagg ctactacaag tgaatttttt
    14161 cttacaatta ttaggtaatt tttctggagc gattaacttt ccagacgtaa cagaagtact
    14221 aaacaatcta atcaaaggga tttttggttg atcctaagaa cataaatcag taaaggaggc
    14281 tactacaaat gaattttttc ttgcaattgt taggtaattt ttcaggtgca atccgctttc
    14341 cggacgtagc agaagtacta aacaacttaa tcaaaggtat ctttggttaa ttgccaatta
    14401 gaataagttg aaatataggg ttaaggctaa cttaacccta ttttctaatt aaagatgtaa
    14461 ataaggagga ttttaaatcc atgaaaaaaa taatcgcgtt aatcacagca gttgcacttc
    14521 tatcaatgat tggatttgcc tttatccctg gtactgttgc gaatgcagcg aattcatcag
    14581 aaagcagttt aacatacaaa gatgtacgca gtggatttta ctttgttggt tatgaaaatg
    14641 tacaacttga aacaggaaaa acatacaagt acacagtagc gtatgaagca aatgttgata
    14701 tgaaaatgac agatactatt acaggacaat cagcaaaagc aggacttttt acaccaaaat
    14761 catccggtgc cgagctgaac actagttacg taagccgaac aaagaataac gttatagacg
    14821 tagctgatgc aggtaataag gtttttaaac acacatttga atttacagcg aaggaaaata
    14881 caaaagcaga tatcggtgtt ttcttaggag caggttctgt tcttccaaca actccagaaa
    14941 ccacgtccct ttggaaaaac gtaaccgtga caaatgaaac tccactagta taagcggagg
    15001 ctccagttat tagtgcagaa gataaaacta tcaatcaaaa tgaaagtttt aatccactaa
    15061 atgaagtcac tgcgtcagac gaaaaagacg gtgatattac aaaggacatc cacgtaacca
    15121 aaaatacggt agatacgact aagagtggca aatatgatgt ggattatagc gttacaaatt
    15181 caagcaactt aacaacgaca aaaagtatta aagtaaccgt aaccccagca gcaataagca
    15241 aaaatacagc cccagttatt aatgcaaaag atcaaacaat caaagttgga gatgtgttta
    15301 atgtgttaaa aggagttact gcgaaagata acgaagatgg tgatttaaca gcaaaaatca
    15361 aagtgaccaa ggatacagtg aataattcga aaaaaggtgt ttatcaagtt acatatactg
    15421 tgacagattc tggcaatcta tcagcttcac ttacaattaa agtgactgta actcaagatg
    15481 gaaaactaat agtaaatcca agtgatccaa caaagccatc tatcacaaaa acacctgtgg
    15541 aaccaacaaa aattgaaaaa gatcctgaaa atagagcgac ttccgttttg aaagcaagta
    15601 aaataccaaa aactggtgat agttcaatga tatggctagt atttgtcgga ctcggcttaa
    15661 cagctattgg tattagttct tatcaaaaaa aagcaaataa ataatgcata ctggatgaaa
    15721 agagtatttt agattagata ctcttttcat taactagatg gtaaaatggc attctaaagc
    15781 tgtttttaaa cagctttata gagagagagg ggaatcattt atgccaaaaa ttgctaaagg
    15841 taatcgactc gagaatgttg cttttgagta cattaagaac aaaatcacaa ctggggagta
    15901 tccaacgggt tatcgtgttg tagaagcaaa gttatctcaa gaactaaata tgagtaggac
    15961 accaattagg cgagcgatta tcaacctttg ccattctgga tttttagtcc accaatataa
    16021 tcggggtgct tttgttcaaa acactgaagt aactattaca gaattttttt cgcgaatgaa
    16081 attagtcgaa ctattgatgt atgaaagtac agaaaaatta attctacgtg aagattatat
    16141 tgtagtggac gatataatag aaatagcaga gaaagtaatt caatatgaaa aaaacaaaga
    16201 atatgaatta atgcgcgata cgtttgaaga ttttatcgtc gcatttatag gtaagctaaa
    16261 taatgattat tttaatagaa taattcaaga attatggaat gaaatcaatg ataatgcaac
    16321 aaaagaagta agactaatta ttgtttcggc aagtgatcga attgcggaag aattagctaa
    16381 tataattgaa attttaaaat catggaatta cggggaacta aaaaaatgtt ttcaacacat
    16441 aatgaacgca atgattttga ttgcttttta aagagaggtt tttaaatatt gaaaaaaata
    16501 agctgggtga ttatcatgct ggttatcgtt gctgcatcgg ttggctatta ttttataaaa
    16561 gaaaatgagc gaaagacgcc acaaacaatt gattacaaaa cagttgaaac aaaaagaaca
    16621 gatttaagtg tatatgtttc cgcagaaggt cacattgtaa aaaaagaaaa tgaatggcca
    16681 gattatgaag attttgctgt caaaattatg gtagatgagc tagaaattaa ccaaataaaa
    16741 gaaaaacaga cagctgatgt gtatgtcgaa gcagtaaata ataaagtata caaaggaaaa
    16801 gttgtagata taaatgagaa gggcattata aacgggtcag taacttctta tgccgtgacg
    16861 attgatttag aggatgagac gaaagtaaaa gaaaatatgt ctgtaagtgc tgatgtactt
    16921 gtggctctag aaaaaaagat tttaacaatt ccaatagaag ctgttaatac ggataaagct
    16981 gataaacatt atgtctatac agttgatgca aataaacaaa agaagaaaat ttggattgaa
    17041 gtaggcaaac ataatacgaa atctattcaa gtagtaaaag gtcttacaga gaaacaactt
    17101 gtgattattc catagacgga ggtgagcaag acttgataca actatttaat atttccaaat
    17161 cctatcaaat gggtgaatgc accataaagg ctctagataa tgtatcattg caaattgatc
    17221 aaggggaatt tctggccatt atcggaccgt ctggctctgg aaaatctact ttaatgaaca
    17281 tcctcggtat acttgacaga gcaacgatag gagaatacta cctcaataaa acgaatttaa
    17341 tgcgaatatc agataagaaa atttctcgaa taaggaatag gaaaattggt tttatttttc
    17401 aacaatttaa tttaatgcca cgacttactg cttttgaaaa tgtagaattg ccattagtat
    17461 atcgaggtgt gggcaaagct actcgaaaaa aagtagtatt aaaaagttta gaacgtgtcg
    17521 gactattaga taaagaaaaa catataccag cccagctttc aggaggacag cagcaacgga
    17581 ttgcaatagc tcgagccatc gctggaagtc cagaattaat attagcagat gaacctactg
    17641 gcgcgctaga ctctaaaact ggagaagaag taatgacttt gctaagagaa attcatagag
    17701 aaggaaatac attaatcatg attacccacg acaaagaaat tgcaaatcaa gcagaacgaa
    17761 taatagaaat aaaagacgga aaactccgtg aatggaacaa attatgactc ttttacagag
    17821 tataaagtta gcgctaaaac aattattgtc caccaaattt cgaacatttt taacaatgct
    17881 tggaattatt attggtgttt tttctgttat attacttgtt tcgattgggg aagctatatc
    17941 gaaaaatgtc tccacacaat taggtgatat gggaagtaat cttttgactg ttaattttta
    18001 ttcagataat ccaaacgata aattcacata caaagatgca aaaaaacttt tgaatgaaga
    18061 tgaaattggt tcgccggaag tgatgcagac aaaggaagtt agaacaagtg aaaagacagc
    18121 tagtaatcaa gtagcgggaa taaatgaata ttatgcgagc ataaaaaatt tggaattagc
    18181 atcaggccgt ttttgctcga atgtagatgt tatctatgcc caaaaagtga caattattgg
    18241 ctcagaaatt gcaaaaactt attttaaaga acagaatccg ataggtgaat atttgcaaat
    18301 tgcaggtgct aggtacatgg tcattggagt tttaaaggaa aagggggaga gtttatttgg
    18361 atcggcagac aaaaaacttt ttatcccaat ttcttccgca gaacgacttt ttaaaacaga
    18421 tactgtggat ttgtattata ttcaaacaaa aaaagtagaa caagttccag cagcagttaa
    18481 ggtagtaaag aaaaaaatga gccagttttt tccaagtaat gaagatgcgt atacagttgc
    18541 aaatcagcaa caggcgttag atacgtttga tagtattacg ggaacactca cgattggact
    18601 aggtgcgatt gcagggattt cgctactcgt tggcggtatt ggtattatga atattatgct
    18661 cgtgtctgtc tcagaacgaa cccgagaaat tggaattaga aaagcgattg gcgcaagtag
    18721 tggcaatatt ttaatgcagt ttttgattga agcagttgtg cttagtttag taggcggttg
    18781 tatcgggatt ttactaggaa ttttttccgc gcaaatagtt acaactacat caagttttga
    18841 aatgtatgtt tctgcttcta cgattctttt agcggttggt ttttcgatgt gtattgggat
    18901 tgtatttggt gtaattcccg cacagaaagc ttcaaaaaaa atgccgatag atgcgttacg
    18961 ggcagattaa ctagaggagg cgtgttggat ggagaaagag caacaaacgg atgatacttg
    19021 ggttttagtt gaaattgtta gccttataac caacgtggaa cgacaaagat tgagagaact
    19081 tagttataca gagttagaag aattttatga aagagtagta gtggagcaat aattaaatct
    19141 tgctttttgc tagaatgata aatctatgcg aaaatgaaag caaattggca ggagggattt
    19201 aaatgaacga atctatttgt aaacgggata acggaggagc tgtagttaat tttgaattgg
    19261 aaattaatgc aacaaaggca gaggtttttg ctttattaac gacaaacgcc ggactagcaa
    19321 agtggtttaa tgagctggaa gtaggcgaac taggagcaga tggctatcta cttttcgtca
    19381 tgacacctga agaaaaaata accatgccaa ttcgtgcatt cgaaactaac caaaaacttg
    19441 ctttcgaatg ggaccaagat gaagttgact ttgaactaaa tgaaatcacc gcaaataaaa
    19501 caagattgac tttcagagaa caacttacaa ctattacgga acacagccca agagatattt
    19561 ccggttggca tatttgcttg aagaaattac aagcgagcgc agaagggaaa atatacgatt
    19621 tcaacaaaac ggagttcgaa acgctcttcg ccaagtatca aaaagaactt aatatcgaaa
    19681 aataaatcct ttagaaaagt cgtaaatgaa gccgagaatg ctttgtttat ggcttttttt
    19741 gtatgtatta atttttttcc actttaactg gaaattcctt atgttcaaaa aagtaatcgg
    19801 tttcattaga atgtaattgt aagcaaggca ttgaaaaaat acggggtgac gaaatgatag
    19861 tatcggaaga acaattattt ttaaatcagc atctacgcac aaaagaagaa gtgctagctt
    19921 ttattgcaga caaggcagaa gaaatcggta tcacaacaga ttcagctcag gtggaacgtg
    19981 acttatgggc tcgcgaaaaa gaatacgcaa cagcagtaca acaattaatc gctattccac
    20041 atgcgaaaac agaggcaata tcagaagcaa aactgctttt cattcgcctc actgaaccga
    20101 ttgattggga gtcaaaagaa ggttttaagg cacaagccat ttttgccata ttagttccag
    20161 ctagtgaggc cagccagcaa catctgaaaa ttttatctag cgtggctgtg aatttactag
    20221 aagaagcatt tcaagaacaa attttaacga ttaaaacgga acacgaattg atggattact
    20281 tgaaagataa tttggaagga gaattaatat gaaagttgta ggagttacgt catgtatcgc
    20341 aggacttgcg cacacaccaa tggcagcaaa agcattagaa aaagcaggag taaaattagg
    20401 acacgatgtc aaaattgagc aacaaggagc gatggggaca attgatgaaa tcacgccagc
    20461 tgaagtgagc gcggcagatg tagttatcat cgcggcggat aaagtaatcg acggggaaga
    20521 gcgtttcaaa ggaaaaccag tcgttcgtgt gaaaattggt caatgtgttg cgaacgggga
    20581 agcggtgtta agtaaagtag ttgcagcaat tgaagcacgt aaacaaaagg aggctaacta
    20641 agtcatgaaa gggaaattaa acgaagcaaa agaccactta atgtcgggta tatcctatgc
    20701 gctaccagtc attatcgcag gttcacttgt tgtagctgtt gcaaaattga ttgggattat
    20761 tggcggggtt acaaatctgg atgcttatgc tgatgcaagc ggattttatc attatgttta
    20821 tctatttcaa aatgtaggtt gggcggcaat tggcttactt aacttagtac ttgcgggata
    20881 tatcgcttat tcaatcgctg gaaaacctgc tcttgctgct ggttttgttg gtggggtcct
    20941 tgctactagt acaaatgctg gtttcttagg tgccgttgtc gctggtttct tcgcaggttg
    21001 gttaacaaac tgggtgaaaa aacatgttcg aatcactgga cctgctgcaa gttctttacc
    21061 actaattatt ttgccactta tcacagttgg tgccacgggg atactgatgt cactaattct
    21121 cggcggaccg cttggttggt taaaccaaac gttacttgat tgggtaactg aaatgtgtaa
    21181 aaacgataca aacgtcatta ttctagcact tattttagga gcaatgattg gatttgacct
    21241 tggtggacct gtaaacaaag ctgcttggat ggctgggaac gcgctattta tgagtggaat
    21301 ttatctacct tcaatcatga tcaacgtcgc aatttgcatt ccgccacttg gctacggaat
    21361 cgcaacacta ttacgcaaaa agaattattc tactacattc aaagaagctg gaaatggcgc
    21421 gctaatcatg ggactaattg gggtcacgga aggtgcgatt ccatttacac tacgtagccc
    21481 tggtaaatta attccgctaa atgtgattgc ctgcgcgatt ggtagtgccg taacgatggg
    21541 acttggcgct tatgtgaaaa tgccgccgat tggtggaatg tacggtttct tcactattgg
    21601 taacggctgg gcttacttag ttggtggctt ggttggtgca tttattattg gaatttgtgc
    21661 gaacttattc gtcaatttca cagaagaaga aacagctgct gcagacgatg ctgtggatga
    21721 tatcgatatt agttttgatg aaatagagat taaataatag ttggaggatt taatgaaaat
    21781 ggctaaaacg aaagtacacg taattccgca ttcgcactgg gatagagaat ggtatttcac
    21841 ttcaagccgt tcaacaatct atttagtgaa gcatttaaaa gaagtaattg aaacattgga
    21901 agcgaaagac gattaccatt tttacttaat ggatgcccaa agctctttaa tagaagatta
    21961 tttgcgctac tgcccggaag ataaaacaag attagaaaaa ctgattgctg aaaaacggct
    22021 tattaccggg ccatggtata cacaaacgga ccaattagtc atttcacaag agtcgattgt
    22081 tagaaacttg ttatatggta cgagaattgc acgcgaaatg ggacatagca tggctgtcgg
    22141 ttatgtcccg gatgcattcg gacaaggcgg gaacatgcca caaatttata aagaatttgg
    22201 aatttcaaag tttctgtttt ggcgcggagt tgccgataat cgcttaaaac aaaccgaatt
    22261 tatctggcgc ggtgatgatg ggacggaaat gctagcagag caaattccgt ttggctatta
    22321 ctacggcgcg aacattccgg aaaacgaagc cgaacttaaa acctatttgg atgatcaaat
    22381 tggtgctctg gaagagaagg cctcaacgcg aaatgtctat ttcccaaatg gcttagacca
    22441 agcgccagtt aggaaaaatt tgccagaatt agttgcgaaa ttcaatgaat tagatagcac
    22501 gcgggaatac caaatcgcat caccagaaac atttttcgcg gacttagaaa aagatgtgac
    22561 caatttgcca gtcattgctg gtgaactaac agaaggaaaa catagtcggc tgcacaaatc
    22621 gattttctct actcgagctg atttaaaaca agcaaacaat gaaatcgaaa actttttaag
    22681 taatgtatta gagccggttc tttccatcag ctactctctt ggaaatcgct atccgcacaa
    22741 tgaactcgca gaaatttgga agttaatgtt tgaaaatgct gcacatgata gcattggcgg
    22801 ctgtaatagt gatacaacca accgcgacgt caaacatcgt tacaaattgg cttcggattt
    22861 agcgaccaat ttactcgatt taaacatgcg cctaatcagc gaaaaaatcg aacaaaaaca
    22921 accgttccaa tttaccgttt tcaacccact accatacgaa aaaagcggtg tgattaaaat
    22981 gaccgcgtat atcccagaag ataatttcga gatagaagat acgcaaggaa acacgcttga
    23041 atacacgatt ttagaaaaaa cagacctaac tgattacgtc ttaaatcaac atatcgacct
    23101 aaatcctagc aaatccattt atttgccaga aaaagtcttt ttagcaacaa tgctagtaaa
    23161 cgtaaatagt cttccggcgc taggctacga caccatctac tttaatttag aaaaagaaac
    23221 agcggagcaa gaaccaacac aatccaccat gacaaaaatc gaaaacgaat tttatgaaat
    23281 ccagctagct gccaacaatt cactcacgat tcatgataaa aaagcgggca gaacctatac
    23341 agatcaaatg ctttttgtgg aaaatggcga tgatggcgat tcgtataact attcgccacc
    23401 acgtaaagac cttgtaatct catcggaaga agcggtagtg gaaagcctag agtctagtat
    23461 atcaagcgtc aaccaaacat taactatttc cttcaagtta aatgtaccgt ataatttaga
    23521 agaacgtgca aatggtgaaa aaagtaacga aatgactatc aaaacagtaa tttctttacg
    23581 taaaaatgaa gaactcattc gctttgatgt acaagttgct aatcaagtat tgagtcatcg
    23641 tttatgtgtt acattcgcca ccgaaattgc tagcaaattc tcaacagctg atcaattatt
    23701 cgcaccaatc cagcgtccgg ttcgtcttcc agaaatggat gtatgggaag cagaagaatg
    23761 gcaagaagcg ccaatttcga ttgaagctat gcaaagtttt gtcagcttac acgatgaagc
    23821 tcatggggtt gctgtaatga cagagggcgt acgcgaatat gaaatcattg gcgaaaatta
    23881 cgatacgatc tcgctaaccc tgttccgcac atttagccat atgggtaaaa ctgatttact
    23941 atatcgtcct ggtcgcgctt ccggtgagtc aatcgttgcg acaccagacg cacaactgct
    24001 tggcgaaata aatgccacat ttgcgctaac tttattcgaa agctcttttg acgaagcgga
    24061 tatcgcgaaa aaagcaaaag aatatctatc gaacccgcca gtttaccaaa tgtctgattt
    24121 tctaaacggc cgcttgattt atgtttaccg cgatgaagaa aaaacgctag atgccacata
    24181 tagcttggca cttccgacaa tagatggagc gattattagt gcagtaaaaa aagccgaaga
    24241 cgccgatgcc ttcattacac gctttttcaa tccatattta caaaaagaaa ttaccattcc
    24301 agaagttttc caaggcaagg aacgccactt ggatgaaagc gaatcaaacg agaaacaaac
    24361 gagattaaaa catgcaaaag tacaaagcta tttatttgaa aaataacgct taactaccta
    24421 aaaaaggagc tgctaataat gggatatttc gcttataaac gtttggaaac actatatggc
    24481 atgctccttg atgcgggtag ccacttatca gctcagaaac tcagccaaga tttacatatt
    24541 tccgaacgta cgatacgaac agatattgct aaactaactg aatttctcga aagctacggg
    24601 gcaacgataa cgctaactcg aggcgcggga tacaaaatcg aaatccttga ttcgttggtt
    24661 tttcaagctt ttcaggccga aaaaaacaaa ccaaaaaatg cgggttattt tgaccttgat
    24721 aatcccgaag aacgcgtgaa atacgagatt ttcatgctgc tatcaagcgg cgactatatt
    24781 aaattggaag acttggcaga tacgattttt gctagccgtg caaccatttc aaatgatatg
    24841 aagcaagtac gaaaagttat tgcggtgtat gatttaacgc tcgtctcaaa accaggtagc
    24901 ggcgtgaaaa tcatcggaga agaagaaaaa atgcgctatg ctctaaccgc gttaattgct
    24961 tccaaaaacg ccccggaatc ctacttagaa acatttttcg aatggcacaa acaaaaagat
    25021 aaactgcaaa aattaatgac agctgtgacg gattattttt ttgcgaccaa cattcgtttc
    25081 acagacgaag cgcttcaaaa cttactttta catatgatga ttttggtgga acgaattgaa
    25141 ctcggtcata cgttggaaaa gtttgaatta acggatgtta gtgaagaaga aatcgcgatt
    25201 gcgactaaat tgtctactat tatagagtcg cttttcgaaa tagacattgc ggatgcggac
    25261 aaaaattatt tgcttctcca aatcgccagc aaacgaattc tgaatgtaga agataaagaa
    25321 attagcgaat ttgatgatta cgcgtatatt gaaggcatgt tgaaccgcat tgagtcccat
    25381 tacttttatc atttacaaga tgatatgcag cttaaaaagg accttgttgc tcatattcat
    25441 tccatgttat atcgagtaaa ataccatatg accgtcaaaa atccaatgac agagcacatt
    25501 aaacgctatt accctttagc ctacgaaatc acgctcgatg cagtggaatc actaaaaaaa
    25561 gactacccgt atgacattaa tcaaaatgaa ttagcctatt tagcgctgca tattggggca
    25621 tccttagagc ggaattatca aatctcttac tatcgtcata aatcagcctt gattgtttgt
    25681 gggtcaggct ttggaacagc acgaattgta gaagcgaaag taaagtcagc agtgagtaat
    25741 ctcgatatta caaaagtagt ttcaatccaa gaatataacc gttttatcca tattgaagaa
    25801 gatatcattc tctccaccgt tagaatacct gagaaaaata aaccggtcat caaaatcagc
    25861 aatatcccaa ccaatgaaga attaaaaatg cttggtgcca ttattcaaga acaaaccgat
    25921 cctaaccgcg gctttctatc gaattttttc acagctgatt tttttgccag aagcagtatg
    25981 acaaacaaaa cagcaatttt agaagaaatg gttgactcat tacgccaaca aaatattgtt
    26041 ggtgaaggct tcttgcaatc ggttcttgaa cgtgaaaaat taggctcaac tgtactcgga
    26101 accggaatag caatcccaca tccactcgga ctaatggcca aagaaacaaa aatcgttatt
    26161 cggatattag ataaaccaat caaatgggat caaaaacaat ccgttcgcgc cgtattttta
    26221 ttatgtatta gcaaaaatga ttatgaagaa gccattaata tttatgaatt gctagtagaa
    26281 ttagtacgcg aagaatatgg tgagaagctt tcaaggcttt ccgactttca tgcattcact
    26341 gctttagcaa atgatatttt gaagaaaaaa taaaagctac ttcctttttt aggaagtggt
    26401 tttttcgtga atttttcgtg aattttacca tttttcgttt agtgataggt tatttcatgg
    26461 tacactataa gaataataac taaatatatg gaggatttaa tgaacagaca aacagaattt
    26521 acattactta ttgtgggggc ttcattaagc attttaactt ttctaggtgc tatgttgtat
    26581 accattattt ttggacttaa taccctaatg gtagctgata cttttggtta ttatagtagc
    26641 tcagaagaaa cgattgtact tgggataatt actttctttt cagtagttgc tgcatttttt
    26701 gcactcggat cagcagtttt tggatttatc ggtgcattta aagtcaaaag tgacgggcca
    26761 aaagtaaaaa cattaggcgt ttgttttatc gttttgggtg gattgcaagt atttactatt
    26821 cacggaattt tatttttgat tgcaggaatt ttaacaatta caaaaaaaga atacaaaaca
    26881 aattctaaag aagatgaggg gacaaaatgg gaatgataac gttcttacca atatttttta
    26941 tttttgcgat ttttttagga ctagcagcaa aagtcctttt agcaatttgg atttataaag
    27001 atgctgaaca acgcggaatg aacgcaattc tttggtgtct gttaatggtt ttcattaatg
    27061 tcattattat tcttgttatt tacctgatcg tacgtaataa aggagaagtc atgaagcaaa
    27121 atttaggact actaattagt ggtattggta ttgcggtact aaatacatta atggcgatta
    27181 tggcttttat ttttataatc ttttttgcgg tgaatgatgg tggaatgcat aatatgatgg
    27241 acggttataa ctatgattat gacgacgggt acgagtacga tatggataat tttgaagatt
    27301 tttaataaca ccaacgagaa tctgctacct aatacaggag cagattcttt ttatatttct
    27361 ataaaagggg tatagacaat aaaaaagtga atatcgacaa ggggaactgc tgaatggata
    27421 cggttatttt aattacggtt attatcgtta taatgggctt agcatttgat tttataaatg
    27481 gatttcatga tattgcaaat gctgtggcca caagtatttc aactagagct ttaaaaccgc
    27541 gagtggcaat tggaattgcg gcagtcatga attttctggg agccatttcg tttaccggag
    27601 tagctgaatc gctcaccaaa agtattgtag atccattttc gcttaataat ggagagtttg
    27661 tcgttttatg cggcttaatt gcggcagtga tttggaattt gatgacttgg cttgttggca
    27721 tgcctagtag ttcctcgcat gcgcttatcg gtgcgatagc tggggcctcc atcgcatcag
    27781 ccagtagttt tagcgtgctt aattggtcag gatttacaac tattattatt gcactcatta
    27841 tctcgccgat tatcggtttt acagtaggtt atttgattta ttcactcttt aagcatcttt
    27901 ttcacgacaa aaagcttggg aagatgaatc gacgctttcg ttttatccaa attggaacag
    27961 ctgccgccca agcatattca cacggcacaa atgatgccca aaaaacgatg ggaattatca
    28021 cgcttgcttt agttgcgagt gggcttttga aagagtcagc tggtattcct ttttgggtgc
    28081 aagtaagttg tgcggcatcg atggcgattg gatcgtctgt tggtggttat cgaatcatca
    28141 aaacagtagg aactaaaatc atgaaaatca ccccagttac aggtgttgcg tccgatttaa
    28201 gctcactttc tgtaatcatg acagctactt tgattcattt gccagtcagc actacgcaag
    28261 ttattgacag ctcgattatg ggtgtcggaa cagctaacca taaaaaagaa gtcaattggc
    28321 gtacggggaa aaatatggtt gtaacttggt ttatcacgtt accactagct ggacttttag
    28381 cggcagtggt atactggata tcagcagcta tttttttata ataaggagga ttttaaatga
    28441 aaatagaaca tgttgcatta tggacaacta atttagaaca aatgaagcaa ttttacgtca
    28501 cttattttgg tgcaacggcc aatgatttat atgaaaacaa aacaaaaggc ttcacttctt
    28561 actttctttc gtttgaagac ggagcaagac ttgaaattat gagtcggacg gatgtaacag
    28621 gaataacaac tggggaaaac ttaggctggg cgcacatcgc tatttcaaca ggaacaaaag
    28681 aagcagtaga tgagctaact gaaaaactaa gacaagatgg ttttgcaatt gcgggtgaac
    28741 caagaatgac aggagacgga tactacgaaa gtgtcgtgct agacccagaa ggcaatcgca
    28801 tcgaaattac gtggtagtat tgatttgcta ggaacttagt tatcgtgtaa tatacggggt
    28861 acatactaca aatgaggtga attttatgga tatcgtaact aataaaattg tcgtagaaaa
    28921 gtataatttt gaaacaatca tggaagaaaa tgagcaattc gaaaacaaaa ttgaattaga
    28981 ggtccatgaa gtcgagccag tcaatggaaa tgtggaactt atgtcaaaag gaaaaatttt
    29041 taaaatcaca attccttttt tattagtcct tgaaaatttc cggattgacg gtagaatcag
    29101 ccgtattatt caattaaaag acttttttgg agatttttcc gatttagaag ctgtagatgt
    29161 tgaaggctta tccaatccac taattgacta catcaaacgc ttaacatatg atgtaacaga
    29221 aatcgcattt gatgaaccgg gagttagctt ggattttaac gctaatcata atagctagtt
    29281 aggagagaaa atgcgtcaat atatgaaaat ggtacgtccg tttgattttg taattattat
    29341 tttactaatc ttgggttcgt ttttaccact aatattattt tctgtcgctg aagcaaagca
    29401 cgtgggcgat gatgtcgtag cagttatttc acaagatggc aaagtggttc gggaaatccc
    29461 gctaactggg cacaaaggaa atgagcagtt tacgattaaa ggaaaaggcg cgcaatataa
    29521 tttgatggaa gtagatggcg agcggattcg aataaaagaa gacaacagtc cagaccaagt
    29581 aggcgtcaaa atgggctgga aatccaaagc cggtgacacc attgtttgtt taccacataa
    29641 agttttcgta gagataaaat cgacaaacaa aaaaagcaaa gaccccgata cagatttaat
    29701 tgtgccgaat taaaacacac taagcgatta gtgtgttttt ttgtttgaac caactaattt
    29761 aaaaattatt gtcaaattta tgtcacgtgt tttcatggtt gctacttagg tatctaagaa
    29821 acaaaaataa gaagcggaaa tttgcatatt aaaattagac aactacttca aaatacggtg
    29881 ttacaatcaa taagccataa taatgattgt aagtaagctt agttgaagga aggtactaaa
    29941 atgaaagcga aaaataattt ttttaaacaa ttaatttcca taatgactgt cttgagcctt
    30001 ttgttcatgg tattaggtat tcagggtaat aatgaggtta aagcagcaac tttagccacg
    30061 ccaccagctc caattaatca aattttccca gatgcagatt tagcagaagg aatacgagca
    30121 gtgcttcaaa aagcaagtgt cacagatgta gtgacacaag aagaattaga aagcattacg
    30181 aaattagtag tagccgggga aaaagtagcc tccattcaag ggatcgagta tttaactaat
    30241 ttggagtact taaaccttaa tggaaaccaa attactgata ttagcccatt aagtaattta
    30301 gttaaattaa cgaatctgta tattggaact aataaaatca ctgatattag tgccttgcaa
    30361 aacttaacta atttaaggga gctatatctt aatgaagata atattagcga tattagtcca
    30421 ttagcaaatt taactaaaat gtattctttg aatttggggg ctaatcataa cctcagtgat
    30481 ttaagtccgt taagcaatat gacaggtttg aattatttga cagtcacgga gtctaaagta
    30541 aaagatgtga caccaatagc caatttaacc gacttatata gtttaagttt gaattataat
    30601 caaattgaag atataagtcc gctagctagt ttgacaagtt tacattattt tacagcatat
    30661 gtgaatcaaa ttactgatat tactcctgta gctaatatga c
//
LOCUS       DASDXX010000009        29836 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.009, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000009 DASDXX010000000
VERSION     DASDXX010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29836
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.009"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            69..1085
                     /locus_tag="U0280_000353"
     CDS             69..1085
                     /locus_tag="U0280_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM2270315.1"
                     /translation="MVQITKGKFDGLQRLSNEKGVIAALAIDQRGSLKKMIQQAKGTE
                     NKKDVEDFKQLVSEELTPYASAILLDLEYGTPAIKARHEGSGLLTSYEKTGYDATTPG
                     KLPDLIEDLSALRIKENGGDAVKILVYYDPDEPAEINEIKYAFLERIGAECRAVDIPF
                     FLEPITYDATVTDSGSLEYAKLKPAKVKASIKEFSKPRYGVDVLKLEVPVNFKYVEGF
                     AEGEVAYTQDEAARHFEECSDLSPLPFIYLSAGVTSEMFHKTIQFANQHNVQYSGVLC
                     GRATWADGIEVYGKQGDDALREWLRTQGKENITSLDKLLDEGAVPWWTKYGSFEDVHV
                     VEKQ"
     gene            complement(1133..2308)
                     /locus_tag="U0280_000354"
     CDS             complement(1133..2308)
                     /locus_tag="U0280_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2270316.1"
                     /translation="MNQKIKQAVLNNEEAMIAFRRDLHMHPELQWQEFRTTDKVAKEL
                     DKLGIPYRRTEPTGLIAELKGGKSGKTVALRADMDALPVQELNQDLPYKSTEDGKMHA
                     CGHDAHTAMLITAAKALVEIKDELPGTVRFIFQPSEEIAEGAKAMIAQGAMEGVDHVF
                     GIHIWSQTPSGKISCVVGSTFASADIIQIDFKGQGGHGAMPHDTIDAAVIASSFVMNL
                     QSIVSRETDPLDPVVVTIGKMDVGTRYNVIAENARLEGTLRCFNNITRAKVAKSIEHY
                     AKQTAAIYGGKAEMIYKQGTQPVINDEKSALLVQETITESFGEEMLYFERPTTGGEDF
                     SYFQDEAPGSFALVGCGNPEKDTEWAHHHGRFNIDESVMKNGAELYAQFAYNYLNQN"
     gene            complement(2274..3545)
                     /locus_tag="U0280_000355"
     CDS             complement(2274..3545)
                     /locus_tag="U0280_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HEM2270317.1"
                     /translation="MQTNLERIKKHIEKLDTYTATPGQGTTRLTYSKEDLDARNYLKQ
                     EMAKVGLAVSEDAIGNIYGRLEGENPKLPAVIVGSHFDSVPNGGAFDGPAGVITGLEV
                     ATVFYEQQIKPHFPLEIIAMVEEEGARFGAGLLASRTITGKVTKEMLHEMKDIDGITA
                     AEAMAKVGFDANQVVTAIRTKESVKAFIELHIEQGPVLENANEDVALVDTVVGLTEIK
                     VTVKGQAGHAGTTPMLDRKDALITAVEILGQLPELAIQEGGGTVLTVGKLNVYPNGAN
                     VIPDKVVFTVDIRAKDEIHVQNTLAKTKEIIQSAEKNGITCEIEDMLYEPPTHLSKEI
                     HQALTESADQLGLKYRTMVSGAGHDAMIFASLTEVGLIFVPSHNGISHAPEEWTDYDK
                     LQKGIEVVLKTVKKWTEESANESENKTSSFK"
     gene            complement(3649..4971)
                     /locus_tag="U0280_000356"
     CDS             complement(3649..4971)
                     /locus_tag="U0280_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM2270318.1"
                     /translation="MKKGVKIVTIGGGSSYTPELVEGFIKRYHELPIRELWLVDIEAG
                     REKLEIVGNMAKRMVKAANIDCEVHLTLDRREALKDADFVTTQFRVGLLDARIKDERI
                     PLSHGIIGQETNGAGGMFKAFRTIPVILGIVEDMRELCPDAWLINFTNPAGMVTEAVL
                     RYGNWDKVIGLCNVPIGAVKSASDVLEKPEEDLFFKFAGINHLHWHRVFDKDGTELTE
                     KVIDGLYAPDANPGKVVENIKNMRFLYEQVKHLKMLPCPYHRYYYMTDAMLEEELASF
                     KNEGTRGEVVKKLEDSLFELYKDPNLDYKPEELSKRGGAHYSDAACEIINSIYNNKGT
                     VMVVSTRNNGAIDDVPYDSAVEITSVIRAHGAEPINFGKFPPAQRGLLQVMKSMEELT
                     IEAAVTGDYATALQAFTSNPLVPSGDLAKTILDEMLEAHKEFLPQFAK"
     gene            5143..6111
                     /locus_tag="U0280_000357"
     CDS             5143..6111
                     /locus_tag="U0280_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2270319.1"
                     /translation="MANIQEIAKLAGVSSATVSRVINKRDYVSDETRKRVQTIIDQLD
                     YVPNINAVSLKKGATKLIGMVIPSFTDSLNVFLKSFTMIAQEHGYNVTLFMTRIDPDK
                     ELEALEMLRQKQIDALVLVIRSNDWKTIEHYTKYGPIVTWQRVESEKIPSVFMNQYDG
                     YTLALEHLYAKGYRKFVNVYGNTTGLNTQSRMLAFKDFCARYELDPHEFRQFYGQGSR
                     QDGEKIAHWFAETEHKPDAFLTPNDYFAAGLLTEARRLGYSVPEDFAICGFDNMEIAH
                     LLDITTIHYPVNLQAENAFTLIMNQLFGSNLPLLDLDFHLVERKTT"
     gene            complement(6151..7506)
                     /locus_tag="U0280_000358"
     CDS             complement(6151..7506)
                     /locus_tag="U0280_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEM2270320.1"
                     /translation="METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKI
                     YQKIVTKARNLVAVGEAIESEFGIPIINKRISVTPIAIIAGSSADTDYVEFAKTLDAA
                     AKEVGVNFIGGYSALVQKGYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDA
                     VRQMGEVIKETADLTADTQGLGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVS
                     GPGVVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA
                     PTPAIGDSVAHILEEMGLEMVGTHGTTAALALLNDAVKKGGVMACGHVGGLSGAFIPV
                     SEDAGMIEAVQQGALNLEKLEAMTAICSVGLDMIAVPGDTTAETLAAMIADEAAIGVI
                     NNKTTAVRVIPASGTKVGDMVEFGGLLGTAPVMPVNGKSSVDFIARGGRIPAPIHSFK
                     N"
     gene            complement(7525..7794)
                     /locus_tag="U0280_000359"
     CDS             complement(7525..7794)
                     /locus_tag="U0280_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEM2270321.1"
                     /translation="MRAVLTVIGKDNVGIVAGVSNKLAELNINIVDVSQTIMDGYFTM
                     MMMCDISQITKEFDEVKAELAGKGEDLQVKIHIQREEIFNAMHKL"
     gene            complement(7872..8702)
                     /locus_tag="U0280_000360"
     CDS             complement(7872..8702)
                     /locus_tag="U0280_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2270322.1"
                     /translation="MNLEEIVDCMLLNENDKEIQRTQTEHRIKLVDFWQVKNGDRVLE
                     VGCGQGDTTAVLANAVGASGFVQGIDIAPRTYGAPFTIGDATDHLQKSKLGAQIDFKL
                     GTDILNGDITFPENAFDVAVLSHASWYFSSKSELTMMLELLSKWAKRVCYAEWDTRIT
                     DVKQTSHMLAVLTQSSYEAFKQDTQSNIRTFITPIDMQEIIQEHNWKMGAETSIFSEK
                     MQDSRWEIGYVKDFITKELEADLGLPEKFKAFLLSQSKLITLENSLPMASYCTSWQVK
                     "
     gene            complement(8762..9616)
                     /locus_tag="U0280_000361"
     CDS             complement(8762..9616)
                     /locus_tag="U0280_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2270323.1"
                     /translation="MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNI
                     TFLLVIITYFTNLTLGLILNVLYIFIYATYIIYEIVANQIAYGFGSYFWLIITPLFTV
                     ASAMFTRNTSRLQEENTKIKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLP
                     LSLMVIKVRHWRELKRFQSEEEMRLALQDISAILETCIRTSDVLYLLDKDDATWGLLL
                     LTDEPGGKLVADRIKSRIAEANTEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLA
                     TKELEYDV"
     gene            complement(9631..11682)
                     /locus_tag="U0280_000362"
     CDS             complement(9631..11682)
                     /locus_tag="U0280_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HEM2270324.1"
                     /translation="MKKLTVIGLLMFAVLFLYRPDVLAADKNYQTVFGTDKTAQGKFT
                     TTKQNFTVENYWDVSNANVKLVYTITQLSEKEVSTMTLKINDVAFYSFKPDKADKGTK
                     QIEIQIPKDKLKKGVNVLSIESFVYTDLPDGRCTIDDTPANWLQFDKTSAVNVSYSDK
                     AFQKTIAEFGERFTGIDIVKSEQGAVAVSNKAGDAELGAALEGLSGFSAANTLEDKNI
                     AFGQYEEAKTRDGKNYLVLFSSYDNLPNDLKSQIKDDNKLEKQALFQVVTVGNTNTLV
                     VTSKSNDALKKAGKLIANQNYLSQLGTNTKWLTTDEKIDTPATNVDKNTKLTTTGDKL
                     KGIGHITQDYFISMPANRSASTGTEVSLDFRYAQNLDFEHSLVTILVNGKPIGSQKLT
                     AKKANGDKLTFQIPSDLNVKGDFSVTVAFDLVLTNNYCGFIADSEIPWAYITPESKIN
                     LNTSEETDLLFEQYPYPFIANGDFNNAVVVVPDKLTTEDTDSLANIFNLLGRFHDGNR
                     GDLTAVHAANWKKPKEGSNIVAVGTMNNNPVIKNANDDLYFQYNKTGDYFLSNEKISI
                     EKNYGKQLGSVQLITSDGVPILAVTGPGAKQTELGSDLIATKANLAKIYGDGAIVDTD
                     NTIHSYRFKKAADTQEESFGSKISNNKEVTVFGAFALLTVVILVVAVLLILRKYRRSR
                     K"
     gene            complement(11698..12948)
                     /locus_tag="U0280_000363"
     CDS             complement(11698..12948)
                     /locus_tag="U0280_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM2270325.1"
                     /translation="MVIADYLALFAVVCIWGLLLINIVLIVAGYVYYLKNEARKVPEI
                     PAEVPFVSVMVPAHNEGKVIVKTVESLLAFDYPVDRYEIIVINDNSSDNSAELLAAIQ
                     AKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGE
                     ITNDAKLGAVIGKFRTRNRNASWLTRFINIETLSFQWMAQAGRWALFKLCTIPGTNFI
                     VRRSLLEEIGGWDVKAVAEDTEISFRIYMMGYRIKFQAKAVTWEQEPQTLPVWFKQRS
                     RWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLV
                     HTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAA
                     YGFFIFLKDTVLKRETKWYKTERF"
     gene            complement(12959..14455)
                     /locus_tag="U0280_000364"
     CDS             complement(12959..14455)
                     /locus_tag="U0280_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270326.1"
                     /translation="MRKKLIVSILLAFMIFVVGGHSAIAKTDDGVVVFYDSLATGTEN
                     EGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEIIVLQNKKDGLASDWTEKLAKSKA
                     KIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSF
                     GEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITG
                     VNPFIDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIM
                     MNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFN
                     TGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRTFPVDIAITYPFFDNEK
                     ELKAAAEELANDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKN
                     KTVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYRLYMKKYMK"
     gene            complement(14448..15923)
                     /locus_tag="U0280_000365"
     CDS             complement(14448..15923)
                     /locus_tag="U0280_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270327.1"
                     /translation="MIGKVKSISMWLWHHLTPQIFAVICVFIITLIALFVPPYIGMAD
                     NGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALL
                     LNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADT
                     AYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNA
                     PIAVVIAVCGILVFFIRKNRAFRISAAATFFVIFLSGVVMYAFIPGEFVTINQYQTMT
                     RGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTV
                     LSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSIYSDVKEKL
                     APAKFTFLILWALVFLICYGVSAFKHFREKNIRGMLLFDLVILLIGSGFAVILVTIVG
                     DGEADLTKHNFLFNVCFDLTMLIGAASLLEVYMKKRGERNA"
     gene            16153..16893
                     /locus_tag="U0280_000366"
     CDS             16153..16893
                     /locus_tag="U0280_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2270328.1"
                     /translation="MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSENDV
                     DKLQQILFFKELDFPLKKIKQILDDPFFDKNVALDLQRHLLIEKKQRIETMLATLDQT
                     IRNEKGEITMTNKEKFTGFDFSTNPYEEEAKKRWGDKVVEKANEKVNNMSEKEKLTLK
                     ESFDAEFRHLASVRELAPESEEAQLAIDHFFHYLNDTHGNIYSLEAFAGLGEMYVADE
                     RFTKNIDQFGDGLSHFLKEAMNIYAKTK"
     gene            17032..18693
                     /locus_tag="U0280_000367"
     CDS             17032..18693
                     /locus_tag="U0280_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEM2270329.1"
                     /translation="MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGL
                     PPIYGLYASFLPVIAYVIFASSPQLVFGIDATASAITGSIILGTAGLAAGSKEAIALA
                     PILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGD
                     SFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFF
                     KLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMR
                     NKYTIDDNRELFAYGISNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIA
                     LIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLL
                     VGVIFGVLLGIFLSFINVVSRSMKSPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYR
                     YSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGI
                     EYYFADLIDHLKTSFRKHDLGYIIDNGYTKKTVEDALEAYYAEHK"
     gene            complement(18739..19182)
                     /locus_tag="U0280_000368"
     CDS             complement(18739..19182)
                     /locus_tag="U0280_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270330.1"
                     /translation="MYSNRKEKVVFTLIMCSLMILCMSSYNIFLENGIGANSFLIILK
                     AFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLS
                     LIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL"
     gene            complement(19289..20041)
                     /locus_tag="U0280_000369"
     CDS             complement(19289..20041)
                     /locus_tag="U0280_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2270331.1"
                     /translation="MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVST
                     TTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQI
                     QNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLS
                     DKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEM
                     YQEANITSQLPALYTIENIAREIRTQIDKEKM"
     gene            20243..21559
                     /locus_tag="U0280_000370"
     CDS             20243..21559
                     /locus_tag="U0280_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM2270332.1"
                     /translation="MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAG
                     REKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERI
                     PNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVL
                     RYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTK
                     DVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAE
                     HGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQ
                     IVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAE
                     AAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK"
     gene            complement(21592..22596)
                     /locus_tag="U0280_000371"
     CDS             complement(21592..22596)
                     /locus_tag="U0280_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEM2270333.1"
                     /translation="MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKL
                     IRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLL
                     GEPEFVEDMSGEDLDITALKRNTKDLVCAFPKISCVVIGVPGIEIGGKLRAMDFPLLL
                     NVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNG
                     EILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNF
                     YFGQKDFTEELTEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
                     "
     gene            complement(22727..24142)
                     /locus_tag="U0280_000372"
     CDS             complement(22727..24142)
                     /locus_tag="U0280_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM2270334.1"
                     /translation="MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQV
                     FDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPT
                     FAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISG
                     LILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVF
                     AFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILV
                     FISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRA
                     LVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKL
                     YPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAF
                     VFGLIMACIGLLCSLFIRKAK"
     gene            24289..24657
                     /locus_tag="U0280_000373"
     CDS             24289..24657
                     /locus_tag="U0280_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEM2270335.1"
                     /translation="MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLA
                     NKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSK
                     GILVKQGLPAVLALVAVLLV"
     gene            24938..25753
                     /locus_tag="U0280_000374"
     CDS             24938..25753
                     /locus_tag="U0280_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2270336.1"
                     /translation="MKKNIFKLMMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFY
                     VVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTA
                     NLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGIS
                     PKDFADSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSH
                     GLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK"
     gene            25874..27304
                     /locus_tag="U0280_000375"
     CDS             25874..27304
                     /locus_tag="U0280_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM2270337.1"
                     /translation="MKRRTYVIITGLVLIFVAGAFWITNSTNQSDQKATQTEPLKKTS
                     PANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTAC
                     LEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKG
                     VVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAES
                     AFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKEN
                     NIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKENTLVIVNM
                     HWGVEYRETPTDYQSQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFG
                     ADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAK
                     KIVDELNRISKPIEGGVTEYTYFDPF"
     gene            complement(27351..27782)
                     /locus_tag="U0280_000376"
     CDS             complement(27351..27782)
                     /locus_tag="U0280_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM2270338.1"
                     /translation="MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLR
                     AFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPA
                     EFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR"
     gene            complement(27883..29712)
                     /locus_tag="U0280_000377"
     CDS             complement(27883..29712)
                     /locus_tag="U0280_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0514 family class 1 internalin"
                     /protein_id="HEM2270339.1"
                     /translation="MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLN
                     GLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIK
                     NQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYA
                     QNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRT
                     NPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVA
                     LPSARLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMNSYTISSGTY
                     DQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVP
                     GEYTVTLNAENAAGLKATSVTVKVTVHEKPVITADSQISYKKESTKSVDEFLQEIHSS
                     VTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDGGHVNPVP
                     PTPEVKPTPQEETDPTIIPEPQSENSEDPVKENNAKTEEKANKTSLTTKENKVEKADK
                     AEKTNQPKTKALPQTGDTNKSTLPIAGVMLSLAALLIFRKSKS"
BASE COUNT         8854 a         6192 c         5534 g         9256 t
ORIGIN      
        1 agtggtataa taaggaagga taaattgatt aagcaacgac aaattgctat aaaggagact
       61 agataaaaat ggtacaaata acaaaaggta aatttgatgg tttacaaaga ctctccaacg
      121 aaaaaggtgt cattgcagcg cttgccattg accaacgtgg ctcactcaaa aaaatgatcc
      181 aacaagcaaa aggaacagaa aacaaaaaag atgtggaaga cttcaaacaa cttgtttctg
      241 aagaacttac accttatgct tctgcgattt tgcttgattt agaatatggt actccagcaa
      301 tcaaagctcg ccacgaaggt agcggacttt taacttctta tgaaaaaaca ggatatgacg
      361 caacaactcc tggtaaactt cctgatttaa ttgaagattt atcggcactt cgtattaaag
      421 aaaatggcgg agatgctgtt aaaattctcg tttattatga tccagatgag ccagctgaaa
      481 ttaatgaaat caaatatgcc tttttagaaa gaatcggtgc tgaatgtcgc gcagttgata
      541 ttccattttt cttagagcca attacttatg atgcaacagt tactgattct ggttctttag
      601 aatatgctaa attgaaacca gcaaaagtaa aagcttcaat taaagaattc tctaaacctc
      661 gttacggtgt agatgtactt aaacttgaag ttccagttaa ctttaaatat gtggaaggtt
      721 ttgcggaagg tgaagtcgct tatacgcaag acgaagcagc tcgtcatttt gaagaatgct
      781 ctgacttaag cccacttcca tttatttatc ttagtgctgg tgtaacttct gaaatgttcc
      841 acaaaacaat ccaatttgcg aaccaacata acgtgcagta tagcggcgtt ctttgtggtc
      901 gtgcaacttg ggctgatggt attgaagtgt acggcaaaca aggcgatgac gctttacgcg
      961 aatggcttcg tacgcaaggg aaagaaaaca ttacttctct tgataaattg cttgatgaag
     1021 gtgccgttcc ttggtggaca aaatacggtt cttttgaaga cgtacatgta gtagaaaaac
     1081 aatagcatgc gaaaagcctc cagttaattg aattagctgg aggctttttt tattaatttt
     1141 gatttaaata attatacgca aactgggcat atagctcggc gccatttttc atgacacttt
     1201 cgtcaatatt aaatcggcca tggtgatgcg cccattcggt gtctttttct ggattgccgc
     1261 agccaacgag tgcgaaactt ccgggagctt catcttgaaa atagctgaag tcttcgccgc
     1321 ccgtggttgg acgttcaaag taaagcatct cttcgccgaa tgattctgtg attgtttctt
     1381 ggacgagtag tgcgcttttt tcgtcgttga ttactggttg tgtgccttgt ttgtatatca
     1441 tttctgcctt gccaccgtag atagcggcgg tttgtttggc gtagtgttca attgattttg
     1501 cgactttggc gcgtgttatg ttgttgaagc aacgaagcgt tccttccaaa cgggcattct
     1561 ctgcgataac attgtagcga gtgccgacat ccattttgcc gatagttact acgactggat
     1621 caagtggatc tgtttcgcgt gatacgatgg attggaggtt cataacgaat gaggaagcaa
     1681 ttacagcagc gtcgattgtg tcatgcggca ttgctccgtg accaccttgt cctttgaagt
     1741 cgatttggat aatatctgcg gaggcgaatg tggagccgac tacgcacgat atctttccac
     1801 ttggagtttg ggaccagata tgaatcccaa acacgtggtc cacgccttcc atcgctcctt
     1861 gggctatcat agctttcgca ccctctgcaa tttcttctga aggttgaaaa atgaagcgca
     1921 ctgttccggg tagttcgtct tttatttcta cgagtgcttt tgccgcggtt attagcatcg
     1981 ctgtatgagc atcatgacca caggcatgca ttttgccgtc ttctgtggat ttatatggga
     2041 ggtcttggtt tagttcttgg actgggagtg cgtccatatc ggcacgcaag gcaactgttt
     2101 tccctgattt cccgcctttg agttccgcga ttaatccggt tggttccgtg cggcggtaag
     2161 gaatgcccag tttgtccaat tctttggcaa ctttgtcggt agttctaaat tcctgccatt
     2221 ggagttcggg atgcatgtgc aaatcacggc ggaaggcaat cattgcttct tcattattta
     2281 aaactgcttg ttttattttc tgattcattc gcgctttcct ccgtccattt ttttactgtc
     2341 ttgagtacga cttcgattcc tttttgtagc ttgtcgtaat cggtccattc ttctggggca
     2401 tgacttatgc cgttgtggct aggaacaaaa atcaagccca cttcggttaa actagcgaaa
     2461 atcatcgcgt cgtgcccggc cccgctaacc attgttcggt attttaagcc gagttggtcg
     2521 gcactttcag tcaatgcttg atgaatctct tttgataaat gggtcggcgg ttcgtatagc
     2581 atatcttcta tttcgcaagt gatgccgttt ttctctgcgg attggataat ttcttttgtt
     2641 tttgctaatg tattttggac gtgaatttcg tcttttgctc ggatatctac ggtaaaaacg
     2701 actttatctg gaataacgtt tgcgccattt ggatagacgt tgagtttgcc cactgttaat
     2761 acagttccgc cgccttcttg gatagctagt tctggtagtt gacctaaaat ttcgacagct
     2821 gtgatcagcg catcttttcg gtcaagcatt ggggttgtgc ctgcatggcc ggcttgtcct
     2881 tttactgtta cttttatttc tgttaaaccg actactgtat ctactagcgc cacatcttca
     2941 ttggcatttt ctaggactgg tccttgctca atgtgtagtt cgataaatgc tttaacggat
     3001 tctttcgtgc ggatagctgt aactacttga tttgcatcaa atcctacttt tgccatggct
     3061 tctgcggctg taattccatc tatatctttc atttcatgga gcatttcttt ggtaactttg
     3121 ccagtaattg tacgtgaagc aaggaggcca gcgccaaaac gagcgccttc ttcttccacc
     3181 atcgcaataa tttcaagcgg aaaatgtggt ttaatttgtt gttcatagaa aacagtggct
     3241 acttcaagtc cagtaatgac gccagctggt ccatcaaaag caccaccatt tggtacagag
     3301 tcaaaatgag agccgacaat tactgctggt aactttggat tttcgccttc tagtcgtccg
     3361 tagatatttc caatcgcatc ttctgaaaca gcaaggccta ctttagccat ttcttgtttt
     3421 aaatagttgc gcgcgtcgag gtcttctttg ctatatgtaa gccgagttgt tccctgaccc
     3481 ggagttgctg tataagtatc taatttttct atgtgttttt ttattctttc aagatttgtt
     3541 tgcatcaagc acacctcctt ttttctattt tacaggaaac ttgaaaaaat gctcgctaaa
     3601 acaactcaca aaaaaagtga tccctatttt ctagggatca cttgcgaatt atttagcgaa
     3661 ttgtggtaaa aactctttgt gtgcttctag catttcatct agaattgttt ttgctaagtc
     3721 gccgcttgga acgagtgggt tagaagtgaa tgcttgtagt gcagttgcgt aatcgcctgt
     3781 tactgctgct tcgatagtca attcttccat ggatttcatt acttgtagta agccgcgttg
     3841 tgctggtggg aatttaccga agttgattgg ttctgcgcca tgcgcacgga taacacttgt
     3901 gatttctaca gcactatcgt aaggaacgtc atcaattgcg ccgttattac gagtagatac
     3961 taccattacg gtacctttgt tgttgtaaat ggaattgatg atttcacatg ctgcatcact
     4021 gtaatgtgcg ccgcctcgtt tggataattc ttctggtttg taatcaagat ttgggtcttt
     4081 atataattcg aataagctgt cttctagttt tttcacgact tctccgcgag taccttcgtt
     4141 tttgaaagat gccagttctt cttcaagcat tgcatccgtc atgtagtagt aacgatgata
     4201 tggacaagga agcattttta gatgtttaac ttgctcatat aagaagcgca tgtttttaat
     4261 gttttcaacg acttttcctg ggttagcatc tggtgcataa aggccgtcga taactttttc
     4321 tgttaattcg gtaccatctt tgtcgaatac gcggtgccag tgcaagtggt tgattccagc
     4381 aaatttgaag aataagtctt cttctggttt ttctaaaacg tcggatgcgc ttttcactgc
     4441 tccgattggc acgttacaaa gaccgataac tttatcccag ttgccgtaac gaagaacggc
     4501 ttctgttacc atacctgctg ggtttgtgaa gttgattaac caagcatctg ggcaaagttc
     4561 gcgcatatct tcaacgatac caagaatgac aggaatcgta cggaaagctt taaacattcc
     4621 gcccgctccg tttgtttctt gaccgatgat gccgtggcta agaggaattc tttcatcttt
     4681 aatacgagcg tctaataaac caacacgaaa ttgtgttgta acaaaatctg catcttttag
     4741 agcttcacga cggtcaagtg ttaaatgtac ttcgcagtca atgtttgctg ctttgaccat
     4801 acgttttgcc atattaccaa cgatttctaa tttttcacga ccagcttcaa tatctactag
     4861 ccaaagttct ctgattggaa gttcatgata gcgtttaata aatccttcaa caagttctgg
     4921 tgtgtaactg gaacccccac caattgtaac gatttttaca ccttttttca taatatactt
     4981 acctcctaga attttaaagc gttttctttt cttctcattc atcataattc atgtaatgca
     5041 ttacaggtca agcacttatt ttaaatttat ccaaactggc tatttggcgg gattttttgg
     5101 tatactaatt agagagctac gagaaatcga ggtgtttttt aattggcaaa tatacaagaa
     5161 atcgcgaaac tagcgggtgt ttcatcagca acggtttccc gagtgattaa taagcgcgac
     5221 tatgtaagcg atgaaaccag aaaacgtgtt cagacaataa ttgatcagtt agattatgtt
     5281 ccgaatataa acgccgtgtc tctgaaaaaa ggggcaacga agctaattgg catggttatt
     5341 cctagcttta cagattctct gaatgtattt ttgaaaagtt ttacgatgat agcgcaagag
     5401 catggttata acgtcacatt gtttatgacg cggattgatc cagataaaga actagaggcc
     5461 ttagagatgc tgcgccaaaa acaaattgat gcgctcgtcc tggtcattcg gtcaaatgat
     5521 tggaaaacga ttgaacatta caccaaatat ggcccgattg tcacttggca acgtgtcgaa
     5581 agtgaaaaaa tcccttctgt atttatgaac caatatgatg gatatacgct tgcactagaa
     5641 catttatatg caaaaggata tcgaaaattc gtgaatgttt acgggaatac gaccgggctc
     5701 aatacgcaaa gtcgcatgct tgcttttaaa gacttttgtg cgcgttatga gcttgatccg
     5761 catgagttta gacagtttta cgggcaaggt tctcggcaag acggggaaaa gattgcgcat
     5821 tggtttgcgg aaacagagca taaacctgac gcctttttga caccgaatga ttattttgcg
     5881 gctgggcttt tgacggaagc aagacggctt ggttacagtg tcccggaaga ttttgcgatt
     5941 tgtgggttcg ataatatgga aatcgcgcat ttgcttgata tcacaacgat tcactacccg
     6001 gtaaatttgc aagctgaaaa tgcttttacg ctcattatga atcaattatt tggtagcaat
     6061 ttgccactgc ttgatttaga ttttcattta gttgaacgaa aaacgacata ataaaaggtt
     6121 tcctcgcaaa tttggaggaa acctttttcg ttagttttta aaagaatgaa ttggtgctgg
     6181 gattcgaccg ccgcgagcaa tgaagtccac agacgatttt ccgtttactg gcattactgg
     6241 tgccgtgcca agtaagccgc cgaattcgac catgtcgcca actttggtgc cacttgctgg
     6301 aatcactcgg acagcagttg ttttattgtt aatgacgcca atagccgctt catccgcaat
     6361 cattgctgct aatgtttcgg cagttgtgtc acctggtacg gcaatcatat ccagaccaac
     6421 cgaacaaatt gctgtcattg cttctaattt ttcgaggttg agcgcccctt gctgcacagc
     6481 ttcaatcata cccgcatcct cagaaacagg aatgaatgcg cctgataaac caccgacatg
     6541 tccacaagcc attacgccgc cttttttcac tgcgtcattt aaaagtgcga gtgcggctgt
     6601 cgtgccatgt gttccaacca tttctagtcc catctcttcc aaaatgtgtg cgaccgaatc
     6661 accaatcgct ggagttggtg caagtgataa atcgacaatc ccaaaaggaa cgccgagttt
     6721 ttcggaagcg acttggccaa cgagttgacc catcctagtg attttaaacg ctgtttgttt
     6781 gactgtttca gcaacgatat caaacggttc gccttttact ttttcaatag cacgtttcac
     6841 cacacctggg ccgctgacac caacattgat aacgcagtcc gcttcaccaa caccatggaa
     6901 tgctccggcc ataaaaggat tatcctcgac agcattggca aatacaacga gtttcgcgca
     6961 acctaggcct tgcgtatctg ctgttaagtc tgccgtttct ttgattacct cgcccatttg
     7021 gcggacagca tccatattga ttcccgttcg cgtcgagcca acattgaccg atgagcatac
     7081 gcgttccgtt tgtgcgagtg cttgcggaat cgagcgaatc aggatttcgt cacctttcgt
     7141 gtagcctttt tgaacgagtg cggaatagcc cccaataaaa ttcacgccaa cctcttttgc
     7201 agcagcatca agtgttttcg caaattctac gtagtcagta tctgcgcttg atccagcgat
     7261 aatcgcaatc ggagtgacag aaattcgttt attaataatt ggaatgccaa actcagattc
     7321 aatcgcttca ccaactgcaa ctaaattacg cgctttggta acgatttttt gatagatttt
     7381 ctttcgagcc acttcgccgt cgccgtccat acaatctagc aaagaaattc ccattgtaat
     7441 cgtccggatg tccaattttt cttcttcaat cattcgtata gtttctaaaa tttgatttgt
     7501 ttccatacta gcatcgcccc catcctaaag tttgtgcatt gcgttgaaaa tttcttcccg
     7561 ctgaatatgt atttttactt ggaggtcctc gcctttaccg gctaattctg cctttacttc
     7621 atcaaattct ttcgtgattt ggctaatatc gcacatcatc atcatcgtaa aataaccatc
     7681 cataatcgtt tgggatacat ccacaatatt gatattcagt tcagctaatt tattactaac
     7741 acctgcgaca atacccacat tatcttttcc aattacagta agtacagctc tcacattcaa
     7801 cactccttta gttcgttaat acgttccatt atagcataaa aaatctaaat cttgtgaaaa
     7861 agaaagcaaa attacttcac ctgccaagaa gtgcagtatg acgccattgg caaactattt
     7921 tcaagcgtaa ttaatttact ttgactgagt aaaaatgctt taaatttttc tggcaaacct
     7981 aaatctgctt ctaattcttt tgtgataaaa tcttttacat aaccaatttc ccatcggcta
     8041 tcttgcattt tttctgagaa gatacttgtt tccgcgccca ttttccagtt atgctcttgg
     8101 atgatttctt gcatatctat tggtgtaatg aatgttcgga tattggactg cgtgtcttgt
     8161 ttgaaagctt cataagatga ttgggtgagc acagctaaca tatgcgacgt ttgttttaca
     8221 tccgtaattc tcgtatccca ttccgcataa caaacgcgtt tcgcccactt gcttagtaat
     8281 tcgagcatca tcgtgagctc acttttggaa ctaaaatacc acgaagcatg cgataaaacg
     8341 gctacatcaa aagcattttc tggaaaagtg atatcaccgt ttaaaatatc tgtccctagc
     8401 ttaaaatcaa tttgcgcacc aagctttgat ttctgcaaat ggtctgtcgc atcgccaatg
     8461 gtaaacggag caccataagt ccgcggtgca atatcaatac cttgcacaaa gccactagca
     8521 ccaactgcat tcgcaagtac ggctgtcgta tcgccttgcc cacaaccaac ctccagcact
     8581 cggtccccat ttttcacttg ccaaaaatca actagtttga tgcggtgctc tgtttgggtc
     8641 cgctgaattt ctttgtcatt ttcgtttaat agcatacaat cgactatttc ttctaagttc
     8701 atggtattcc tccaatcaaa aatgagagtt acctcctaat tatagaaggt aactctctat
     8761 tttacacgtc atattctaat tcttttgttg ctaaatcgat aaaatcaagt ggtgtcttga
     8821 ctttttcgct atcaaattgg cttgttccaa ttcgaagttc tagcttcaca cggtacttcg
     8881 cggcaaattc ttcggtgttg gcttcagcta tacggctttt aattcgatcc gcaactaatt
     8941 tcccacccgg ttcgtcagtt agtaacaaga gtccccaagt cgcatcatct ttatctaata
     9001 agtaaaggac atcactcgtg cgaatacaag tctctaaaat cgctgaaata tcttgtaacg
     9061 ctaggcgcat ctcttcttcg ctttggaatc gtttcaactc gcgccagtga cgtactttga
     9121 taaccatcag tgataaaggt aaatcataac ggcgcgaaat actggaaaaa attcgctcgt
     9181 cattttggaa tgaaacgata tttttaagca aagtttcttg gtcaatcgtt cctaaatata
     9241 gattttgctg tttgattttc gtgttctctt cttgaagcct tgacgtattt cttgtaaaca
     9301 tcgcactagc tactgtgaaa aggggcgtga ttataagcca gaagtagcta ccaaaaccat
     9361 aggcgatttg atttgcgaca atttcataaa taatataagt tgcataaata aaaatgtaga
     9421 ggacatttaa aatcaaacca agcgttaagt tcgtaaaata ggtgataatc acaagtaaaa
     9481 aggtgatatt taataaaata atgtttcgca aatattcatc cggcgtattg atcataaagc
     9541 caattgtgat gaaacaaagc aagatgaaaa ataaaaagcc gatatctgca aataagttat
     9601 tcgttatttt tttcattttt tatttctccc tcacttccgg ctccggcgat atttacgcaa
     9661 gattagtagg acagcgacaa ctaagataac gacggttaga agcgcgaatg ctccgaacac
     9721 agtgacttct ttgttattac tgatttttga cccaaagctt tcttcctgtg tatctgctgc
     9781 ttttttgaat cggtaggaat gtatcgtgtt atcagtatca acaatggcgc catctccgta
     9841 aattttagct aggttcgctt ttgttgcgat taaatccgat ccgagttctg tttgtttggc
     9901 acctggacca gtaactgcca gaattgggac gccatctgat gtaattaact gcacactacc
     9961 aagttgtttg ccgtaatttt tttcaatcga gattttttca ttggaaagga agtaatcgcc
    10021 tgttttgttg tactgaaaat atagatcgtc attggcgttt ttaattactg gattattatt
    10081 cattgtacca actgcaacaa tgttcgatcc ttcttttggt tttttccagt tggcggcatg
    10141 taccgccgtt aaatctcccc tatttccatc atggaagcgg cctaacagat tgaaaatatt
    10201 tgctaatgaa tctgtatctt ctgtcgttaa tttatcagga acaacgacaa ctgcattgtt
    10261 aaagtcacca tttgcaataa atgggtacgg atattgttca aaaagcaagt ctgtttcttc
    10321 gcttgtgttt aaattgattt ttgattctgg ggtgatatac gcccacggga tttcagaatc
    10381 tgcaataaag ccacaatagt tatttgttaa aactaaatca aaggcaacgg taactgaaaa
    10441 atcccctttt acgtttaaat cgctcggaat ttggaacgtt aatttgtcgc cattggcttt
    10501 tttagcggta agtttttggc tgccgattgg ttttccgttc actaaaatcg ttactaatga
    10561 atgctcgaaa tccaagtttt gcgcatacct aaaatcaagt gatacttctg ttcctgttga
    10621 tgcgctacgg ttggctggca tgctgataaa gtaatcttgt gtgatatgcc caatgccttt
    10681 tagtttatcg ccagttgttg ttagtttcgt atttttgtca acattagtcg ctggtgtgtc
    10741 gattttttcg tctgttgtta gccatttagt atttgttcca agctgactta agtaattttg
    10801 gttggcgatt agtttgccag ctttttttag tgcgtcgttg gatttagaag taaccacgag
    10861 tgtattcgta tttccgactg tcactacttg gaaaagtgct tgtttttcta atttattatc
    10921 atcttttatt tgtgatttaa gatcatttgg taaattgtca tagcttgaaa aaagtacgag
    10981 atagttttta ccgtcacgcg tttttgcttc ctcgtattga ccaaaagcga tatttttatc
    11041 ttctaacgta ttcgctgcag aaaatccgga aagcccttca agtgctgcgc caagttcggc
    11101 atcgccggct ttgtttgaga cagctactgc gccttgttca cttttcacaa tatcaattcc
    11161 agtgaagcgc tcgccaaact cggcaatcgt tttttggaaa gccttatcgg aataagatac
    11221 gtttactgcg cttgttttat cgaattgcag ccagttggca ggtgtatcgt caatcgtaca
    11281 acgaccatca ggcaaatcag tgtagacaaa gctttcgatg gatagaacat tgactccttt
    11341 ttttaactta tctttcggaa tttggatttc aatctgtttt gttcctttgt ctgctttatc
    11401 tggtttaaaa gagtagaacg caacatcgtt tattttcagt gtcatcgtgg aaacttcttt
    11461 ttcgctcagt tgggtaattg tatacacaag ctttacgtta gcgtttgata catcccagta
    11521 gttttccacc gtgaagtttt gtttggtggt tgtgaatttt ccttgggcgg ttttatctgt
    11581 tccaaaaacc gtttgatagt ttttatctgc tgcgagaacg tctggcctat acagaaatag
    11641 tacggcgaac ataagcagcc cgattacagt taattttttc attaggcact ctccttttta
    11701 gaaacgctcg gttttatacc atttggtttc cctttttagt acggtatctt ttaagaaaat
    11761 aaagaatcca tatgcggcga ccaccatcca aagctggcaa tacgtcacat acatcaacat
    11821 aataaataac aaatttgaaa aactgatttc gcctttttcc gtggtgagtg taataaaagt
    11881 acctgcgaca aaaagtaaaa tggctagcaa ccaaagcgcc ccgctaaggc cagcaagcgt
    11941 tgtatgtaca agtcccagcg catataatac gagtaaaaca tcactaacaa tcaaggaagt
    12001 taataataaa aagtaaatcg ataaaaagta taaaatatca aagcgaacgc gcctaccttc
    12061 tcgtttgaaa aggagtggaa cgttttttaa aattacataa atattgcctt tcgcccatct
    12121 tgagcgctgt ttgaaccaaa ctggtaatgt ttgcggctct tgttcccacg taacagcctt
    12181 cgcttggaat ttgattcggt aacccatcat gtaaatccga aagctaatct cggtatcttc
    12241 cgcgacagct ttcacatccc agcccccgat ttcttctagg agcgaccttc tcacaataaa
    12301 attagtacca ggaatggtgc atagtttgaa aagggcccat ctgccggcct gagccatcca
    12361 ctgaaaacta agcgtttcaa tattgataaa tcgcgttaac cagcttgcat ttcgatttcg
    12421 ggttctgaat ttaccgatga ctgcaccaag tttcgcatca tttgtaatct caccaacaag
    12481 gattcttagc gcttgccgtt ccggtgtatt atcagcatca taaatcgcca ccagttcccc
    12541 acgactttcc gcaaacccaa tattgagcgc attcgatttt ccttttccgc ctgtaatatt
    12601 atcggtatta ataattttta aaaagcgtgt cggatttttt gcttgaatgg cggctaaaag
    12661 ttccgcgcta ttatctgaag aattatcatt aatgacaatg atttcgtaac gatcgaccgg
    12721 ataatcaaaa gcaagcagtg attcaactgt tttcacgatt actttccctt cattatgggc
    12781 cggcaccatg acagaaacaa atggtacttc cgctggtatt tcgggcactt ttcgcgcttc
    12841 atttttcaaa taataaacat atcctgcaac aattaacact atattaatta gcaaaagtcc
    12901 ccaaatacac accaccgcga ataatgctaa ataatctgca ataaccattt atttcacctc
    12961 atttcatata ttttttcatg taaagccggt atccaaagac aaataaaacc ccaataatgc
    13021 caagtgaaag tacaattact atcgtgaaaa aggtgttttg atagccgaag aacccttcta
    13081 aactgcccgc ctgtttgact gttttatttt tcgttttaat atagtttaaa tcgccatcga
    13141 gcgtaacgga ttgattattg atataaagtg agcctgcact cgattcaatc gtatccttat
    13201 ttgtttttac cccatgatct tggaatctaa aatcactaat attgtcgttc gctagttcct
    13261 cagcagctgc ttttaattct ttctcgttat caaagaaggg ataggttatc gcgatatcga
    13321 ccgggaaggt tctcccttca gtcgtagtcg cataaaaatc gttcgccacg ctatacggag
    13381 acttttcaaa tgcactgcca ttatttactt tcgtcgtatg gatgattttt tgatttggta
    13441 gcaaaatccc ggtattaaac ggtgcgaaac cttctacgcc atatacttta tcaaagttcc
    13501 agtacagttc tgctgtaact ccaagcggtg cgacgtcatt ttccgcgaag aaatgtaccg
    13561 atttttgcat aatcttttca agttctcccg ctggactatc tccgtacgtc actgctggaa
    13621 cgttcatcat aatcgtgccg ttttttgctt gaacgtagcg caaaatctcc gcataatttt
    13681 tcgccgcttg gaaatcttga ttgtaaaaaa caggccccgc actcacgata aacggaattc
    13741 ctttttcata aaaagtatct gccgtttttt tgagcaaatc gaaatcaata aaaggattta
    13801 cgcccgtaat aaacgcatat tggttggtgg tcgttttaat atcgaataat gctttgagta
    13861 cgtccattag agcaaattca ctcgtattat ctgcttgaaa aagaggtgcg tacgcgtaat
    13921 ttcctgcttg aacgccgtat gcagcttgtc cattttcagc tgcgtccatt tcaccaaagc
    13981 ttgttccttt ataggaagta attagatttg tttcgttcac cagctgtggt tttccagaca
    14041 atccagcttg cgtttgaatt gtgatagaag cctctgtaat tgctttagtt ttcagttgca
    14101 atttatccgt taaaaatgtt gggggatttc cgcctatgta tgctattttc gctttgcttt
    14161 tggctaattt ttccgtccaa tcacttgcta agccatcttt tttattttga agtacaataa
    14221 tttcgcttgt ttgacttaaa tcaggatttt cctcccaaga ataaatcgtc actcgtttgc
    14281 ccaagctatt taacattcga agtagcgcat ccatattgcc ttcattctct gtacctgtcg
    14341 ccaaactatc ataaaaaaca acgacaccgt catccgtttt tgcaattgcg gaatgcccgc
    14401 caacaacgaa aatcatgaat gctagcagaa tacttacaat cagtttttta cgcattccgc
    14461 tcacctctct tcttcatgta aacttccagc agagaagccg ctccaattaa catcgtcaaa
    14521 tcaaagcaca cattaaataa gaaattatgt ttcgttaaat ccgcttcccc gtcgccaact
    14581 atcgtcacta aaatcaccgc aaacccagaa ccaatcagca aaataactaa atcaaataaa
    14641 agcattccac gaatattttt ctcccggaaa tgtttaaaag cactcacccc ataacaaatt
    14701 agaaaaacaa gcgcccataa aattaaaaac gtaaatttcg ctggagccaa tttttctttt
    14761 acatcactat agatggagaa aaaatgcgtt ttctctttaa atttataccc tgtcgccttt
    14821 tcaaaattcc ccatctcaaa tggacgaatc gaaaaactat tttgcgcaga taaatctagc
    14881 attttcccaa attgtttcgg attttccaag taataactca aaaccgtaac aaaattataa
    14941 ttaggataaa attctttttc catcagtttt gagtctaaat caatcatttt atatttttga
    15001 taaaaattcg ttcctttgag taaagcaaat tcggaattca ttcccatttc ttcgagcgat
    15061 ttctccggat tttctgaatc aagtagcaca ccgcgcgtca ttgtttggta ctgatttatc
    15121 gttacaaact ccccaggaat aaaggcgtac atcacaaccc cactcaagaa aataacaaaa
    15181 aaagtagccg ctgctgaaat ccgaaatgca cgatttttcc ggatgaaaaa cacgagtatt
    15241 ccacaaaccg caataacaac cgcaatcggg gcattttgct gttttgccgt aattaaaata
    15301 agggatgcca caaaaatcaa acctagcatc gcataatcat tatatttatg ctgatataaa
    15361 agcaaaaatc ccgccgaaat atacagcatc ataatcaaaa taagcccttc actgaaaaag
    15421 gaattaaagt aagcagtata agccgtatct gcgaaaataa ataccgtcag cgccgcaacc
    15481 acataacccg gccagccttt catttttgcc gttaatcccg ccactaacaa ataaatcgcc
    15541 ggcaaaagaa gcgctaattg caagccacct aaaaaacgca catcaaaaac cgttgttgac
    15601 caaaaaagct tatttaaaag aagcgccatt tgaataaaaa tactttgcga agagtagata
    15661 gctacttggt tttcattaaa gtactgataa atcccaaact ccttcacaaa atgcccaaat
    15721 tgcagcgcgt cataattcgt attattgaca aataaaccat tactcgagaa gattcggaaa
    15781 aagtctccat tatcagccat accaatatac ggtggcacaa aaagcgctat gagcgtaata
    15841 ataaaaacac aaataaccgc aaatatttgc ggtgttaaat ggtgccatag ccacatacta
    15901 atggatttaa ctttccctat catgatgcta tccccttctt atttacgata gaccaatgtc
    15961 acaaaataga cacatttaca tttcattata cgagaatgcc cacttttttt ccatgctttt
    16021 attcattttt tttaaagaag ttgactacaa ctaattttct tttccactaa aaaggttata
    16081 ataaacacaa attcaagctt gactatcacg cgacgtcata ctttatagta aaagcagaag
    16141 gaggaatcac tcatgcaaat aaaagaatta gctgaactca ctggtgtaag tgtgcgcaca
    16201 ctccaccact acgataaaat aggcctactt gtcccgcaaa aagatgactg gaatggctat
    16261 cgtatttatt cagaaaacga tgtcgacaaa ttacaacaaa ttcttttctt taaagaactc
    16321 gatttccctt tgaaaaaaat aaaacaaatt cttgatgatc cttttttcga taaaaatgtt
    16381 gctttagatt tgcagcgtca cttactaata gaaaaaaagc agcgcattga aaccatgcta
    16441 gcaaccctcg accagaccat caggaatgaa aaaggagaaa taacaatgac aaacaaagaa
    16501 aaattcactg gttttgattt ttccaccaat ccatacgaag aagaagcaaa aaaacgttgg
    16561 ggcgataaag tagtagaaaa agccaatgaa aaagtaaata atatgagcga aaaagaaaaa
    16621 ttaactttaa aagaaagttt cgacgcagaa tttcgtcatt tagcatctgt tcgagaactt
    16681 gctccagagt cagaagaagc ccaactcgct attgaccatt ttttccatta cttgaatgac
    16741 acccacggca atatttattc cctagaagcc ttcgctggtc ttggggaaat gtacgttgct
    16801 gatgagcgct tcactaaaaa tatcgatcag ttcggtgatg gcctttctca cttcctcaaa
    16861 gaagccatga atatttatgc caaaaccaaa taaaaaaagc cacgatttct taaaaagaga
    16921 tcgtggtttt atgattggta taacaaagaa cggggtaaat agtataagat ttcattaata
    16981 tgtatctatg atgtaaaata aagaataaaa tacatttcaa gggaggaact tatgtttaaa
    17041 cacatcttgc tttcactaaa tgggtacaaa atatcctatt tacgaaatga tgtcatttca
    17101 ggcgttggtg ttgctgcact gacgattcca gttgcaatgg gatatgcaca agtagcagga
    17161 cttccaccca tttatggatt atatgcatca tttttaccgg ttattgcgta tgttattttt
    17221 gccagttcac cacaacttgt tttcggaatt gatgcaacgg caagtgccat cacaggatcc
    17281 atcattttag gaacagctgg acttgctgcc ggatctaaag aagctatcgc gctcgcccca
    17341 attctcgcat tcttttgtgc aatattttta gttcttttct ccgtattaaa attaggacgt
    17401 ttcgcaaaat acatatcagc cccggttctt agtggattca tttccggact tagtgtctcc
    17461 atcattatgg ggcaaattcc taagataatg ggcctaaaag aaagcggaga tagtttcttc
    17521 tctagtctag gcattatttt cggacagttt ttccagtcca attggatttc atttgccatg
    17581 ggcgtggtta cagtcattat tgttatcact tgtaaaaaag ttataccaaa aatccctatg
    17641 tctcttgtag ttttagtact tgggacaatg gctgcttatt tctttaaatt agatcaatat
    17701 aatgttgata ttgtaggtaa aattccagtt ggcttccctt cactagcgct acccgatttt
    17761 ggtgcaagtt cgtgggcact cgcgattggc ggcggtttag tatgtgccat cgcaactttt
    17821 gccggttcgc ttttaccaag tgaaagtttt gctatgagga acaaatatac gattgatgat
    17881 aatcgtgagt tatttgctta tgggatttct aatttcgtcg ctgcgttttc tggttgttcc
    17941 ccagcaagtg ccagcgtatc cagaactgct gctaacgaac aatttcgtgg taaaacgcaa
    18001 atggtttcta tcgttgctgc gaccattatt gcgctaatcg ttgccttctt aagtggctta
    18061 ctttactata tgccgcaacc agttctttca ggtatcgtat ttgctgccct tgtaggtatt
    18121 attgatgtag atgtgttaaa aggtttattc aaagtttctc gtcgtgaagc aactgtttgg
    18181 attgttgcag cacttggtac ccttttagtt ggcgttattt tcggggtact acttgggatt
    18241 ttcctatcat tcattaacgt agtaagtcgt tcgatgaaat caccaattgc cattcttgga
    18301 gtgatcgaag gacgccacgg ttatttcgat ttaaaacgta aaccagaagc aaaaccaatt
    18361 ccaaatgttg tcatttatcg ttatagcgct tctcttttct tcgggaattt caacaaattc
    18421 gcagacggct taaaagaagc agttcaagat gatacaaaac tagtcatttt tgaagcgagt
    18481 gcgattatta acattgatac aaccgcaacc gaatctatga aagacttgct caaatggctt
    18541 gatgacaaag gcattgaata ttactttgct gacctaatcg accatttgaa aaccagcttt
    18601 agaaaacatg atcttggcta tattatcgat aacggctaca cgaagaaaac cgtggaagac
    18661 gcgctcgagg cttattatgc cgaacataaa taacaaaacg cttagccggg cctaaactcg
    18721 actaagcgtt tttcattttt acaaaagcgc aaaaatccgc ggactaatta accgcacaaa
    18781 cggtgacacg ataaaaattt gcaaaaataa agccacaaaa taattgcgca aaataagaat
    18841 acctagatga ctccattcgc cttggttcac aatcaggcta agcgtcgaca taagcacaca
    18901 cataaatgta accatcaaca attgcatcat aatgatcttt ttaaatttcg aagcatcttc
    18961 actaaccaaa agggcgtgta gacgatacac aatttttccg acaacaaaaa agtctaataa
    19021 aaatccaata aaaagaaacg ggacaaatgc ttttaaaata atcaaaaagg aattcgcgcc
    19081 aataccattt tcaagaaaga tattataaga gctcatgcat aaaatcatca aagaacacat
    19141 aataagtgta aaaacgacct tctctttcct attactgtac ataatttcac ctccaaagaa
    19201 ctatcgtagc aaattaaaaa attcttcgta agtgacaatt ttgttacaaa aaaagttttg
    19261 ctcggaaatc caagcaaaac gtagcttttt acattttctc tttatcaatt tgcgttctta
    19321 tttcccgggc aatattttca attgtatata gcgccggtag ttgggacgtg atattcgctt
    19381 cctggtacat ttccttatta atataataag cgatgttcgc gtcagatagc cttgcaattg
    19441 ttgatttcgc gctattcgta atcgaaatta ctttacaatt ttgcgctttc agttggtgaa
    19501 tgtagcgaat gatgtcttca ttttcccctt ccaccgaaat cgcaatcata cagattttat
    19561 cggataattt gctcgataaa tggtaaaacg ggtggttaag cggatcttca atatgtagcg
    19621 ccagcgtaaa taatgacgaa aaataaatcg cgccatattc agcaattaca cccgatgaac
    19681 ccaccccagc aaataaaacc agttcgcgat cacgaagaat ctcgaccgcg ttttgaattt
    19741 gcgctttaaa ctcaggttgc gccgtccgtt ttagaaaatc aatataagtc gtttcatccg
    19801 ccatatcaat ttgcgccaac ttctgctctt ccaaataaag ctgtaatttc acccgaaact
    19861 ccgaaaaacc attacaacca aattttcggc aaaaacgtag aattgtcgtc gtactcacat
    19921 gcgcttccgt cgccaaatcg cgaatccgca tataaacaac tttatctaaa ttcgccacaa
    19981 tataattata aatatctaat tccgtatcat ttaattccaa atttttatcc aaaaaaagca
    20041 ttttcgcacc tcttttcgct ttattttacc atgtaacacc tcgttactca aatgtgacaa
    20101 gttcctactt agaaaatcct tacctaaacc tcgtcaaata ctagctattt tttcataaaa
    20161 ttcctatact ataactgtga gaagaaaagg tgataccaaa taagtaagcc ttttcaaaaa
    20221 aatatccttg gaggtataaa taatgactaa aggtattaaa atcgcaacta ttggtggcgg
    20281 atcaagttat acacctgaac taatcgaagg atttattaaa cgtcaagacg aattaccagt
    20341 tcgtgaacta tggttagtcg acgtagaagc tggccgtgaa aaattagaaa tcgttggtaa
    20401 tttagcaaaa cgtatggtag aaaaagctgg cgttgacatg gaagtacatt taacactaga
    20461 ccgtgaagaa gctttaaaag atgctgattt cgtaacaaca caattacgtg taggtttact
    20521 agatgcacgt gtgaaagatg agcgcatccc gaattcatat ggcgttgttg gtcaagaaac
    20581 aaacggacca ggcggcatgt tcaaaggact tcgcacaatc ccagttattt tagatatttg
    20641 taaagacatg gaacgccttt gcccagatgc ttggttaatc aactttgcta accctgcagg
    20701 aatggtaaca gaagcagttc ttcgttacag taaccaaaag aaagttgttg gcttatgtaa
    20761 tggccctatc ggcatcgaac gcaatatcgc tgaaactctt ggcgtagacg tttctgaaat
    20821 ttacgtagaa ttcgttggtc taaatcacat ggtattcgcg aaaactgttt atcataatgg
    20881 caaagacgta acaaaagatg ttgttttcaa aatgacagaa gatgaagctg gctcaagcct
    20941 taaaaatatc aatgcaactg gttgggacaa aacgttctta cgtacactaa acatgattcc
    21001 aatcgactac ttgcgctact actggcaaac aaaacaacaa ctagaagacc aagctcgcgc
    21061 atacgcagaa catggtactc gtgcagaagt tgttaaaaaa gtagaagccg aacttttcga
    21121 gctttacaaa caagaagaac ttgctgaaaa accaaaacaa ttagaacaac gcggcggcgc
    21181 ttactacagc gaagcagcat gtaacctaat taactctatc tacaacgaca aacgcgacat
    21241 tcaaatcgtt aatactcgta acaatggtgc catccttgat atcgaccctg attccgcagt
    21301 agaaacaaac tgtgttatca ctcgccaagg cccaattcca ctagcaagcg gacgtcttcc
    21361 aatcgctatc aacggcatca tccaagaaat caaaactttc gagcgcctaa cagccgaagc
    21421 agcagttact ggtgattacg acaaagcact acttgcaatg acaatcaacc cactaactcc
    21481 aagcgaatct gtagcccgcg aaatgctgga tgaactttta gaagcgcata aagagtattt
    21541 accgaatttc tttaaataag taaaaaaaga gcctgtcaaa gggctctttt tttatatccg
    21601 ccaatccgtc atattattct ccaaataatc aatcccaaac gccaaaagcc caatccgata
    21661 atccgtcgta aacttacgcg acaacacaat ctccggcaaa accgcatatg gataaacttg
    21721 ctttaactct tccgtcagtt cctcggtgaa atccttctgc ccaaaataaa aatttgtata
    21781 gagcacaatc gtttccggat cataaaaact catcgttagc agcaccattt tacgaatgtg
    21841 cgctttaatt tcatcgacag aaaaatcaaa gttatcccag tccacttgaa gcggcatatg
    21901 cttaatctcc ccagccagcc cattttgacc tttcaaaatc tctccgttca tcaaaagccc
    21961 tgcacccggt ggaaaacgct ccggataata aagtccaacg atattctcct ctttcaccgg
    22021 ccgattttta taccctaaaa ttgccgcatt cgtatccgtc tcaaccaaca ccggtaaatt
    22081 cacttccgcc tccaaagtct cacgcaattg cacatttaaa agtagcggaa agtccatcgc
    22141 acgtaactta ccgcctattt caattcccgg caccccgatt acaacacaag aaatcttcgg
    22201 aaaagcgcaa acaagatctt tcgtattccg tttcagcgca gtaatgtcca aatcctcccc
    22261 agacatatcc tccacaaact ccggctcacc aagcaaatta tagaccgaaa aagaataagt
    22321 aattttcttc cacttttctt gcaaactaat aaccaacacc tgctgaaaat taggattaat
    22381 ttcatacgaa acagctcttc ttccgccagt cgcaaccgaa ttatcttgtt ctaaaatctc
    22441 ttcattttcc actaaatcac gaatcagctt gttcactgta actacactta gcccagtcac
    22501 ttcggcgatt tccgctttcg tcatcgcacc ttgttgccgt aaaatcgact tgatattttt
    22561 cttattcaat tcttttaaat cacgaggaat tgccatcatc aaccactcca ttcgtaaagt
    22621 tattaaacaa actttataaa ctatatttac tatcatttta accactcaga acccatttgt
    22681 caaaacaaaa aagaacctct cattacgaga agttctcttc gctttattat ttagctttac
    22741 gaataaataa cgagcacaga agaccaatac aagccataat cagtccaaag acaaaggcat
    22801 tttgaattcc tgctgtaaga gaagcaacca tttgctccgg tcctactcct tgcgccgttt
    22861 ccatataagc tttttgtcca gctgacatga tcgtaatcgc aacagccgtt ccaatcgcgc
    22921 cggaaacttg ttgcaacgtg ttcataatcg ccgtgccatc aggatataat tttggtggta
    22981 attggtttaa tccgtttgtt tgtgccggca tcatgaccat tgaaatccca atcattaaca
    23041 ccgaatgaag cacgatgatg gttaatgcag atgttccaac ttctattctc gttaagaaaa
    23101 atagtgccac aactgctacg ataaaccctg ggataacaag tgcgcgtgga ccgtatgcat
    23161 cgaacaaacg cccagtaaat ggtgacatta aaccattcag caccccaccc ggaagtaata
    23221 ctaatcccgc tgaaaatgct gcgagcgcta aactattttg caagtatagc ggtagtaaaa
    23281 tcatcgttga aagaatcatc ataaagctga taaatactaa aataagtcct aatgtgaaca
    23341 ttgggtattt aaatactttc aagtccatca aaggtttttc cattgttagt tggcgccaaa
    23401 caaagagtcc aagcgcaagt ccaccaacga taattgaaac taataccgtt gcgcttcccc
    23461 aaccactttc tcccgcacta ctaaaggcaa atacaactcc accaaaacct agcgtcgaaa
    23521 gaataatcga taaaatatca attttcggct tcgtaacaac cgaaacattt tgcataaatt
    23581 tcattccgaa taataacgca ataataagga atggcaagga aatccagaaa atccagttcc
    23641 aagttaagtt ttctaaaatt agtcctgaaa ttgtcggacc aactgctgga gcaaacataa
    23701 ttaccagccc gatcatcccc attgctgagc cacgtttatg ctctgggaaa atcagtaaaa
    23761 tcgtgttaaa cattaatggt agtaatagcg ccgtacctac tgcttgcact acacgcccaa
    23821 tcattaacat tgcaaacgtt ggcgaaagcg ccgcaatcag cgtaccagca atcgaaaaac
    23881 tcactgctgt aaaaaataaa cctcgtgttg taaaccattg taaaagtaat cccgaaatcg
    23941 gtactaatat tccaagcgtt agcaaataac ctgtcgtaag ccactgcact gtcgctgaac
    24001 taatatcaaa cacctgaatc aaatcactaa gcgccatgtt aagagcagtt tcactgaata
    24061 gcccaatgaa ccccgccatc aaaaatgagg caataatcgg tatcggccga attttctgcc
    24121 cacctgttgc ttcttgttgc atatagtttc ccccttttca gactaaaaat taagtagtct
    24181 acgtttgata ttacggagat ttcgccaata agtcaacgtt tcaagctcta tttttacgaa
    24241 aaatttacaa gctatgctat acttcgaagt agaaaagagg gattttttat ggccatttta
    24301 gcatttattt taaccttcat cgtaatgatc gagcatattt atataatgat tttagaaatg
    24361 tttttcgcca ataccaaact cgcagccaag acatttggcg tggagaagga attacttgcg
    24421 aataaaaaag tacagacgct gtttgcgaat caagggcttt ataatggctt tcttgcggca
    24481 gggcttgtgt ggggattgtt tttcgcggga gcaggatttg cggagactgt gcagattttc
    24541 tttttgagtt gtgtggttgt ggcggcgctg tttggcggag cgacttcttc taaggggatt
    24601 ttggtgaaac agggcttgcc ggcggttttg gcgttggttg cggttttgtt ggtttaggtg
    24661 ttgcaggaaa aggcttggat taaatctgag cctttttata atggaaattg aattagcgtt
    24721 tcaaacaaat aatttactta tttttccaat ttttatcaaa aacagacttg taaacgcttt
    24781 ccatccatgc taaaatcgtc ctataaacaa atatccttat tcaggaatgt taccaacttg
    24841 ggcataacct agataaatgg agaattggct ttttgggcta gttttcgatt tatctaggtt
    24901 tttattttgc taaatactaa caaaaaagga gaacaagatg aagaaaaata tttttaaatt
    24961 gatgatggcg ttatgcgcag tactattaat tgcaggttgc ggtaacagta catctgcaga
    25021 caagaaagag acaaaagaaa ctaaagaaga tggcactgtg acattttatg tagtacgtca
    25081 tggtaaaaca atgctaaaca caactgaccg tgtacaaggt tggtctgatg cggttcttac
    25141 tcccgctggt gaagaagtag ttaaaagcgc tggtaaaggc ttaaaagacg ttgatttctc
    25201 tgcagcttac agcagcgaca gtggtcgtgc tatccaaact gcaaacttaa ttttgaaaga
    25261 aagcgataaa tccgctgata aagaagtaca aactgatcca cgtttccgtg aattcaattt
    25321 tggttcttat gaaggcgatt taaatgaaaa tatgtggact gatattgcga aaagccaagg
    25381 taaaacttta gaagagtggc aaaaagctgg tatctcgcca aaagattttg ctgatagtgt
    25441 agcagctctt gataaaactc gtgtgaaaga aggcgaaaac tggcctgctg aagactatgc
    25501 aactatccaa gctcgtctaa aagaaggttt aacagatgtt gctaaaaaag aaagcaaaaa
    25561 tggcgatagc aatgtattac tagtttccca cggactaagc atcggtgcgc ttcttgatac
    25621 tatcgaacca ggatacaaac tgcctgcaga aggtatcaaa aatgcaagtg taacaaaaat
    25681 cacttacaaa gatggtaaat tcactattgg tgatgtaaat gacttaagct atgtggaaaa
    25741 aggttctaaa taaatagcca gacaaaaagc ccaaaacaat ttattttggg cttttgtttt
    25801 actaaatata gacttgtgtt tcttccttac aattactata cttagaaaaa aaggaactac
    25861 ggaggatatc tagttgaaga gacgtaccta tgttattatt actggtttag tacttatttt
    25921 tgtcgctggt gctttttgga ttacaaattc tactaatcaa tctgaccaaa aagccactca
    25981 aaccgagcca ctaaaaaaaa caagtccagc taatgttaaa accatttcat cagaagctaa
    26041 gaaaaccttg aattccctag caagttcagg agctgacaaa gcttctattt ccgatttaaa
    26101 tcaattaatt aaagaactaa aatcctatcc agttgaaaaa aatgattctg gcgcctatct
    26161 ccaaaatctc acagcctgtt tagaagctgt aaaatcgtat acgaccggca aaacagatga
    26221 aaaaacgctt gggaaagtat atcctgcttt tcttgcaagt gaacaaaaac tatcagccat
    26281 cgaaaaaaca aatcaatatg attggtttta tgccgcagcc gcaaccaatc aacaaggttt
    26341 gaaagaaaaa ggtgttgtca ctttgaccat ggttggcgat aattcatttg gaacctatcc
    26401 tgaaacgccc gaacacctca aattcgataa cgtattccaa aaaaacaacg gcaataatac
    26461 ctatgtttat aaaaactgcc ttccttggtt taaatctgat gactacactg tcattaacgc
    26521 tgaaagtgcc tttacgaatg caacaaaagc agaaaataaa aaatggcgca tcaaaagtga
    26581 ccctgcacac gtcgcctttt taccagcgag cggtgtagaa gcagcaaatt tggccaataa
    26641 ccatacaatg gattacttcc aagttggtta cgatgacaca ttaaaggctt ttaaagagaa
    26701 taatattcct gttttcaata ccgacgctcc acttgaaaca accattaaag ggatgaaaac
    26761 tgttctacta ggctacgatt gccgtatgag tcagcaatct cctgcttatc ttgaaagaat
    26821 tgtaaaagac gtgaagaaat acaaaaaaga aaatactctc gttatcgtta atatgcactg
    26881 gggcgtcgaa tatcgcgaaa caccaacgga ttatcaaagc caatttggtc atgcgatttt
    26941 agatgctggt gctgatataa ttatgggctc tcaccctcat cgcctagaaa gcgttgaaaa
    27001 atataaagat aaatacatcg tttatagcat gggcgacttt gcttttggag ctgatcctac
    27061 gctactttcc cgtatgacat cgatgttcca actgcgcttt acgaaggaag ataataaaat
    27121 cgttctaaaa gatatttcta tcgttccaac ttatgaaaat tcagatggta gtacgacaga
    27181 aaacaattat caaccgctcc ctgtgtttgg tgatgatgct aaaaaaatcg tcgatgaact
    27241 taaccgtatt agtaaaccta tcgagggcgg cgtaacagaa tacacttact tcgatccgtt
    27301 ttgataataa aaagcgtaga tatcttctaa caaagatatc tacgcttttt ttatctagct
    27361 attaaagtat cgcaaattgc atgagccata atataagaag aaacactacc aagaactagc
    27421 ttttctactc ggttcatccc agtcgctccg caaataatta aatctgcttg gaactctgct
    27481 ggaatgtctg tggaaagtaa gattttcgga ttacctttag caacaaaagt ttctacttgt
    27541 ttcactcctg ccgttctagc tttttctgcg tattcattaa cgctcgtttt taattctagt
    27601 tcggcttttt cttctaagct gccatcataa gaaacattcg gggaaaaggc acgtaaatcg
    27661 acaatactag caattccaag cacaccgtct aattttagcg ctagttccag tcctttttca
    27721 aaggctaatt ttgctggttc agaaccatcc actgctacaa gaatgcgatg atatttttcc
    27781 atcatataaa acctcctaca acttttctta tagtattcca taccctataa aaatgatttt
    27841 aggcctgcca ttcattcttt ttgctaatga attcacaata acttaagatt tgctttttct
    27901 gaaaatcagc agtgccgcta aactcagcat tactcctgcg attggtaagg tgctcttatt
    27961 agtatcacca gtttgtggca aagcttttgt tttcggttga tttgtttttt ctgctttatc
    28021 tgctttttct actttgtttt ctttcgttgt taaagaagtt ttatttgctt tttcttctgt
    28081 ttttgcatta ttttctttca ctgggtcttc tgaattttcg ctttgaggtt ctgggatgat
    28141 tgttgggtcg gtttcttctt gaggtgtggg ttttacttct ggtgttggtg gaaccggatt
    28201 aacatgtccg ccgtcgctag tagtcacagt cacaactacg gttacagggt cagctttttg
    28261 gccgcgatca tttattgcat ttaaagttac ggtgtattcg cctggggtgt ttaaatctac
    28321 tactttatca aaatcactgg ttaaaactgc atttccagtt accgaactat ggatttcttg
    28381 caaaaattcg tcgactgatt tagttgattc ttttttataa gaaatttggg aatcggctgt
    28441 aataactggt ttttcatgaa cggttacttt aactgttacg gaagttgctt ttagtcctgc
    28501 agcgttttcc gcatttaatg tcacggtata ttcacccggt acatcaagct taactacttg
    28561 atcaaaatcg ctctttactg ctgtgccatc atctgtttca gcatgtacat cttttaaaaa
    28621 ttgttcttct gatgttgcat cgtattgatt atagtcaaaa ctttcatccg ccgttaaatc
    28681 tagcgtgtgg ctaatatcaa aatattgatc atatgtcccg ctggaaatgg tataagaatt
    28741 catgcttggt ggtgtcgggt aacttccagt cggaaaatca tagcgtgcat tatattcaat
    28801 ttcatcaaga ttgtcgaatt cttcttttgt tacaccgctg actgtaatac catcatcggt
    28861 aatggataga cgtgcgcttg ggagtgccac atcattaaat cctaaataag tattacttgc
    28921 ggaagtcgat ttagaaaatg gtgcaacagt gccatcaaaa ctcgttaaag gttttggcat
    28981 catcgaaaat ggtaaatata acgtttggtt tgtttcatta taatctaact taccagattt
    29041 aagtgtaatt cttggattcg tgcgccctgt attttgccca aaagcagcaa gagctttcaa
    29101 gttgccattt ttaaaacttt caaagtcatt taaaggtcta aaatcatcaa tgccatcaaa
    29161 ttgtaagaat agtgtcgtta aggctggtaa ggaagcaagc gcagaaatat ctgtgatttt
    29221 catggagttt tgcgcataaa gataagttaa ctttggcaac ttattgaaag tcttaaagac
    29281 attatgtgtc acttcgcttc cgctgatact aagactttgt aaattaacaa gtccatttaa
    29341 atctacgaaa agactatctt ttacattgtc tccgcccact gttaagtaag tcaaagaagt
    29401 ttggttttta atcggttcaa gtgtttggat gttagtattg ttaagagata gtgttaccag
    29461 atttccagct tcctccaaac ccgtcaagtc tgtataagtg ctgccagaaa gtgtaacggt
    29521 ttggatagtg ttcatttgtg ttttagtaat tggtgcatca cttgcttgct tgagcagacc
    29581 attaagatag gttttaagat ttgcatcagg aatattaaca atattcgttt cttctgcgtg
    29641 agctgctgtg gaaggatata tcattatgaa catacaaatc gtcgcaagaa atagtttcag
    29701 tgcttttttc atttatactc tccttagtgg ttaatttctt cccaaagtat aaccgcgtta
    29761 aaactaactc tcaatacgtt ttcataaaat atttcacgtt tgatttgcct taatattcat
    29821 attattcact cttatt
//
LOCUS       DASDXX010000010        29594 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.010, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000010 DASDXX010000000
VERSION     DASDXX010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29594
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.010"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            21..740
                     /gene="budA"
                     /locus_tag="U0280_000378"
     CDS             21..740
                     /gene="budA"
                     /locus_tag="U0280_000378"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HEM2270340.1"
                     /translation="MDTVRKNRLFQHSTMAALVGGLFSGTTSFKELLQHGDLGIGTLD
                     QFDGELIILDGEAFQIRSDGQAYKVKPEDTTPYASTTFFDADTSFSVSEPTSKQAVEE
                     KIAELVQGPNVFYAVKMTGNFRYVDTRVVPKQQRPYPPLIEAVKEQPTYHFEYITGTI
                     VGFWTPAYISGIGVSGYHVHFIDDMRKIGGHVFDYEMLEGTVEVAQQTEFELQLPQTT
                     EFLRSDLSTPDMLEQIEAAEN"
     gene            complement(777..2078)
                     /locus_tag="U0280_000379"
     CDS             complement(777..2078)
                     /locus_tag="U0280_000379"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM2270341.1"
                     /translation="MRMVDIISKKRDGKALSTEEIQFFIDGYTNGEIPDYQASALAMA
                     IFFQDMNDQERADLTMAMVGSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAV
                     GVPVAKMSGRGLGHTGGTIDKLESIEGFHIELDKKDFIDLVNRDKVAVIGQSGNLTPA
                     DKKMYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTDEDAENLA
                     HAMVRIGNNVGRNTMAVISDMSQPLGEAIGNALEVKEAIDTLKGQGPEDLTELVLVLG
                     SQMVVLAKQAETLDEARAKLIEVIENGAALEKFKTFLSNQGGDASIVDHPEKLPQAKY
                     QIEVPAKSSGFVSQIVADEIGIAAMILGAGRATKEDEINLAVGLMLRKKVGDAVKEGE
                     SLVTIFADQEDVENVKAKIYENIQISDHATAPTLVHKVITE"
     gene            complement(2209..3219)
                     /locus_tag="U0280_000380"
     CDS             complement(2209..3219)
                     /locus_tag="U0280_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEM2270342.1"
                     /translation="MAATIREIAEKTGVSITTISQILNGKGERFSDLTREKVLKTAKE
                     MSYKPNFFAKNMIVSHTNTIGMIVPEVTDPFFSQMVKGAEDYLNKEGYMIMLCNSSND
                     KEREDLYVEELLHRAVDGLIIASPNILLSGVIKRMEEKRSPYILLDRQRNPRQEGNIA
                     IDDFKGGYMATEHLIKLGHTRIGIIISDTSFYNVHERYEGYLACMKDYKLTVKDTWIV
                     SGDQTMNGGYVATQKLLQENLSAIFATNDLMAMGTYRAALEKNLHIPTDLSVIGFDDI
                     ELSEYMTPPLTTIRQPIYGIGEIAAELLLKNLQNPTEKLENRLLDISLINRSSTKSID
                     NQ"
     gene            complement(3299..3970)
                     /gene="deoC"
                     /locus_tag="U0280_000381"
     CDS             complement(3299..3970)
                     /gene="deoC"
                     /locus_tag="U0280_000381"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEM2270343.1"
                     /translation="MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVK
                     LSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDD
                     ELVERDIRAVVDAAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTG
                     GATAEDIALMRKTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPA
                     KPDNY"
     gene            complement(4033..4980)
                     /locus_tag="U0280_000382"
     CDS             complement(4033..4980)
                     /locus_tag="U0280_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM2270344.1"
                     /translation="MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNA
                     KTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVAFSQTNDYSEITKQISQSAAEYL
                     EEIIHDGDILGVSWGTTMYKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFG
                     AAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANISIFTVGTVRDEALLF
                     RLGYFSDQEKARLKEKAVGDICSRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILV
                     AGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN"
     gene            complement(5078..5494)
                     /locus_tag="U0280_000383"
     CDS             complement(5078..5494)
                     /locus_tag="U0280_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2270345.1"
                     /translation="MKAIFVCTHGNAAKELIQSAEMICGKQENTSFVPFEVNESAENL
                     QAKIASEVAKLDLTEGILFLTDLKGGTPFNVLVRLLRNFDAVELVAGVNIPLLLEAFI
                     SRETLSLKELANQVAETGRLGIYEYAAPLEEIEEDF"
     gene            complement(5511..6506)
                     /locus_tag="U0280_000384"
     CDS             complement(5511..6506)
                     /locus_tag="U0280_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2270346.1"
                     /translation="MLKFDEQKVRENMEGALKLRPQINEVVDQIHDRGFSNICWLGIG
                     GTYASAMQAVVHMKEKTALETFYENAAVFLTTGNKRVTKDTLVVISSVTGSTQEVVDA
                     VKKCNEIGATVFGFIDKAEAELATLVDHLISYPLNEQLKFFMVADRFMYLAGEFEDYD
                     AFYQEMDQHFAEGIVEVEKAADKFGQEFALKHHQDDIHYFVGAGNQWGATYSYAMCYW
                     EEQHWIKTKSIESHEFFHGMFEIVERDTPVTIYVTEDSQRSLSERVVNFIPQICANYT
                     VIDAKDYDMPGISAKFRGALSPFIIHAVNNRIDVHVEKINCHPMEIRRYYRQLDY"
     gene            complement(6529..7593)
                     /locus_tag="U0280_000385"
     CDS             complement(6529..7593)
                     /locus_tag="U0280_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2270347.1"
                     /translation="MKNMDYYIRSEQSVYENIIRSRKDLLQKVIQMEKVDYQAIVIFA
                     TGSSSNAAFAAQLYMSDKLAIPVYVEEPSTAGNYMLHLNKNTLYIAISQGGHSYSTIH
                     LVKEIERQGGIVFTLTSDLTSPIAKESTRAIDLGMGIEEMPYVTLGYSATILMLNLMA
                     LELALLQEKMLEEEYQAEIAELKKITANLPKVVEKSAAWVDAHTQELMEAERVFFIGY
                     GAAYGVAREGETKVTETIRITAFGKELEEYMHGPYIGLSEQDYIIFLEPQGLLEDRAE
                     KLKQFLQGHVKKIRTFYADAGGEKTDDLLLGVRAAELLTPLFMTIPVHLLSFEISKKK
                     GINLEVSAFPEFDQITKSKI"
     gene            complement(7606..8427)
                     /locus_tag="U0280_000386"
     CDS             complement(7606..8427)
                     /locus_tag="U0280_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM2270348.1"
                     /translation="MKMKSSDVLTKKDLMKVFWRSFTMEWSWNYERQSNLGYGFSMLP
                     ALNKIFKNDKDKRISSYQRHLEFYNVTPWLSTFPLGISIAMEEQSAKDKDFDTDSINN
                     IKVALMGPLSGIGDSFFWGTLRVIATGIGTSLALQGNMLGPILFLLIFNIPAILTRYY
                     GLFIGYNIGANFIEKIQKTGLMDKLSYGASVIGLAVVGAMVATMVNINMPMKFGSGDD
                     AVTIQSVFDGIVPGILALGFTFFIFWLDKKGLKAHWILLLIAGIGILGAFTGLLK"
     gene            complement(8408..9226)
                     /locus_tag="U0280_000387"
     CDS             complement(8408..9226)
                     /locus_tag="U0280_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2270349.1"
                     /translation="MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGD
                     VQMGIIMGATLELAFVGSFSIGASIPPEIISGSILGTAFAISTGESTAVALALGIPIA
                     SLVLVVKNLCFIFVLPYFVHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSY
                     LVGSPVIQNVLDAIPAFVITGLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAV
                     YLKVPVTGVAIFAACLALILTGYATLKNDNGPKNSNTEPALANDGGINYEDEEF"
     gene            complement(9249..9716)
                     /locus_tag="U0280_000388"
     CDS             complement(9249..9716)
                     /locus_tag="U0280_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2270350.1"
                     /translation="MIQFLRVDHRLLHGQVAVSWFNALDVNTILVANDGVAADDFRKS
                     AIRLAKPEAAKLVMKSIDESIEAINSGVTDKYNMLIVVESVEDAYKLIHGTNGKIPML
                     NLGGTKQREGTANFSKAINLTPEEVAKLKELQKENVDVFMQQVPNEKKVTFEA"
     gene            complement(9736..10437)
                     /locus_tag="U0280_000389"
     CDS             complement(9736..10437)
                     /locus_tag="U0280_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2270351.1"
                     /translation="MGAKKPLFEVIASEIKDSINRDEYKPGMLMPNETALQEIFSSSR
                     TTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQNILEMTGVMKTDTNENLKKDIKDFY
                     IRKAGKFYAEKFGIKENELVYSIKFVQKSEHGVTLDRLILPLSLYPDLQAKDFQIINI
                     IELVNSGKYKLFELEQELQLILAGNEQIKNMHIDENDPVFKLSSVFYAENEMPIAIQY
                     HYEDAESTKYVVDFN"
     gene            complement(10439..11170)
                     /locus_tag="U0280_000390"
     CDS             complement(10439..11170)
                     /locus_tag="U0280_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2270352.1"
                     /translation="MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVS
                     RTTLRRSLDTLEKEAVIQKRNRKGIEINQKQTINILQMNSMSSQLPGEQKVEVMSQEI
                     VAGKDEVNHFLNLSEDKPVFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSL
                     YNVLEKQFAIKPTYGREELRFVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYS
                     KQYLIGNQIKYKINAKNIFDYLEDE"
     gene            complement(11343..12338)
                     /locus_tag="U0280_000391"
     CDS             complement(11343..12338)
                     /locus_tag="U0280_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2270353.1"
                     /translation="MEYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLNEANSRPII
                     KKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDVVLATKVQQTMRPDRPNSGG
                     LSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGAS
                     AMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLA
                     SGRLTRDLNETTNRSETDPVQKSKYDDMMNADRGIIERVAELAETHQVSRDKIALAWL
                     LNKDEITSPIIGAQKESHLESAVEALNIQLTAAEVNYLEELYIPHPVVGALPTTK"
     gene            complement(12455..14152)
                     /gene="alsS"
                     /locus_tag="U0280_000392"
     CDS             complement(12455..14152)
                     /gene="alsS"
                     /locus_tag="U0280_000392"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase AlsS"
                     /protein_id="HEM2270354.1"
                     /translation="MAKLEKDQEKVITQGKSGADLVVDSLINQGVTHVFGIPGAKIDK
                     VFDVMEERGPELIVSRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGASNLATGLVTATA
                     EGDPVVAIAGNVTRQDRLKKTHQSMDNAALFRPITKYSEEVVHAESIPEAITNAFRSA
                     AEPNQGAAFVSLPQDIVNEPNVPVKAIRPLAKPENGPASKEQVAKLVARLKKAKLPVL
                     LLGMRASSPEVTGAIRRLLQKTSIPVVETFQAAGVISRDLEDNFFGRVGLFRNQPGDI
                     LLNKADLVITVGYDPIEYDPKAWNASGDRTIVHLDDIRADIDHYYQPVTELVGNIALT
                     LDRVNAKFSGLELAEKELETLKELHAQLEERDVPPESDETNRVHPLSVIQTLRSAIDD
                     NVTVTVDVGSHYIWMARHFRSYEPRRLLFSNGMQTLGVALPWGIAATLVHPGEKVVSI
                     SGDGGFLFSAMELETAVRLRAPLVHLVWNDGSYDMVAFQQKMKYGKEAAVRFGDVDIV
                     KFAESFGAKGLRVTKPSELSDVLKEALETEGPVVVDIPIDYRDNIKLGETLLPDQFY"
     gene            complement(14347..15804)
                     /locus_tag="U0280_000393"
     CDS             complement(14347..15804)
                     /locus_tag="U0280_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM2270355.1"
                     /translation="MKKKWGVIIASLCLLLGLSACGSDEKADANEVPTLKWYMIGTPQ
                     KDTEEVMKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGENFDIAYSAAGEFVS
                     YSQKGAFLPLNKYLDKEGKNMKAELNDVLWEGATIDGNIYGVPSNKEVGEQQVYVFNK
                     NLVDKYKMDVTKVKNFSDLEPMLKTIKENEPSITPIGGNKDFKPAFPYDYLIDNAVPL
                     PFAVNQYEDTGKIVNFYEQPETLDILKSLHSFYQKGYVTKDIATSTDPWSYDKENWFV
                     RIEKYQPYAENIWDKNTGGKYKVVTQPIAETPIIKNNSVTGAIQAVSVTSQHPEEAVK
                     FLDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQDLPARVERYSMPTYALGNHFILKLY
                     EDEPADKWDQFKEFNRKSVASPGLGFYFDSSKVRTEIASITNVCNEFAPALLTGTVDP
                     VEYTEKFKAKLNDAGMKKVMKEMQKQYDEFRASQE"
     gene            complement(15824..16795)
                     /locus_tag="U0280_000394"
     CDS             complement(15824..16795)
                     /locus_tag="U0280_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2270356.1"
                     /translation="MAEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIM
                     LAFLALICIFPFLYIIVISFSSESSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYG
                     ITILVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQ
                     FLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVP
                     LSLPGLATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAY
                     TAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVKE"
     gene            complement(16814..17743)
                     /locus_tag="U0280_000395"
     CDS             complement(16814..17743)
                     /locus_tag="U0280_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2270357.1"
                     /translation="MKKVLSQIRANRIWLLMVLPGVLWFLVFSYLPMFGTVIAFKDYK
                     IDGKGFLSSIMSSDWVGLENFKFLFQTNDAFIITRNTVLYNLVFIIVGLFLGVALAII
                     FNSLLNKRGAKIYQTGMLFPHFLSWVVVSYFLFSFLSEDSGLMNNILLAFGQDPISWY
                     NDPKYWPFILIMMNVWKGLGYGSIVYLAAIAGIDRTYYEAAMIDGAGKWQQIRHVTIP
                     ALTPLMVILTILNVGKIFNSDFGLFYQLPRNSGPLYPVTDVIDTYVYRGLTSLGDMSM
                     SAAAGFYQSIVGFILVLLTNYIVKKINPEYGLF"
     gene            complement(17856..19340)
                     /locus_tag="U0280_000396"
     CDS             complement(17856..19340)
                     /locus_tag="U0280_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2270358.1"
                     /translation="MLKIVLVDDEPLILKGLESIIPEFEQSIEIVGTAKNGAIALELF
                     ANQDVDVLLTDIEMPVMNGLELIDEWKKRQPTTKTIVLSGFEDFHYVKRGLSAGIENY
                     LLKPLNEQELKETFIQIEKKQLTDSVIPREEAYYILRDNTIWRWLNLRINKEEWEERL
                     ALYDMILNSKENAVLIQIQPTKEINLTEWKNLSEQYRKDFPFMLLTPENEIIIGITEQ
                     TSISEQILAIHQDVKKRLSNEAFYLFISEKVQGEMMYPQAFRQLTRLLPERLVQEPGS
                     LIAYQKRTKHTWRPKRKQHQLAKLLVMNNEKEIKAWIQHFFKEWNDHKLESDPHQMLH
                     ILNELLVMMAESDPKELSESMGRIAEETSIEGLEEATLAYAIRYYNRKKQTDESKSPI
                     IQNVLSYITEHFAEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKE
                     ELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPNRYRKIHQ"
     gene            complement(19340..21079)
                     /locus_tag="U0280_000397"
     CDS             complement(19340..21079)
                     /locus_tag="U0280_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2270359.1"
                     /translation="MSMTQELPRKRVFKRMLLIFSLTSLFTVSLLLFFIYKYYTNIQL
                     DTNLQRAETIANKQLDALTEKQKALISLTQDIYRNSDLMQDVQIAMTNDYGSYTEQNI
                     DNYFKSKNFYSVDMQTYLHSYFSYDEDIIALQLISDDGSYSYTFPSRYREWKETVDTY
                     GEANIATEASKQGTFYTIENKIVVKQPINDPSTLKQMGYLLLYIDPTFLSKWITKDYQ
                     NSIFQIQNTKGVELYSNHPKKQIQTPEKQGWLHADNKKVYFQKTEDETSGLKNNTFLY
                     RVTDDSAPLIELTLFGIGLLLVIFSISINFVISRRYSKRILTIIGGMNRVEMGTLDAK
                     LPVDNNGDELTMISERFNHMTENLDAYVKKVYSLEMEEQKARLKALQGQMQPHFLYNS
                     LEAIRMNARVEGAKATSDMIYQLATLLRYTANHREITTLGEEINYVKQYVRFMEMRHE
                     QPIKLEINIEKRFNHTQIPRFALQPLIENFFKYAFKENQNPIVVITVTAENDNLQFRI
                     EDNGSGIDAEKLKEVQATIESKDETSHIGLANLNKRLQLLYGENYRLTIKSKANEGTI
                     ILFQVPQNTGGEK"
     gene            complement(21136..21747)
                     /locus_tag="U0280_000398"
     CDS             complement(21136..21747)
                     /locus_tag="U0280_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YesL family protein"
                     /protein_id="HEM2270360.1"
                     /translation="MKLIDKFSVISDWIIRLVWTNLVWLFLVLIGGIVLGFMPATVAL
                     FTITRKWARGDLDVPVWKSAWQTYKQVFVSANLAGAVFALIGIFLYADLRIVFELMQG
                     FWSTILYFFLMFLLFLVGIAFLQYFTVFVHFQMKNVRAYVGQAFLLAITSFKNTFMIV
                     VGLVFCAWLISKMPAFILFISGVLPSYWIMKINLHRFKQMEPK"
     gene            complement(21808..23112)
                     /locus_tag="U0280_000399"
     CDS             complement(21808..23112)
                     /locus_tag="U0280_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEM2270361.1"
                     /translation="MTNKVPASFNKWIEKVKMTFPENEKLHRMFEKCFTNTYTTTLQE
                     TEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEEDEEMATVIENLVKLQTNCILHDPY
                     ANAFNKSANGAGFQNDKTAMTDLVWERKYEIDSLCYPIQLAYLLWKSTNRTGHFTEEF
                     RKALHQIIEVFKIEQKHTEQSPYRFERENVRQSDTLNNNGKGTDVSYTGMSWSGFRPS
                     DDACMYGYLVPSNMFLVVVMDYVQEIAAAFYPDDKELLKDSADLRKEVAAGIETYAKQ
                     AHPYYGDVYAYEVDGTGRKLFMDDANVPSLLAAPYLGFCEKTDPAYQATRKLILSREN
                     PYFVEGSVLTGIGSPHTPDHYVWPIALSIEGLTAETEAEKQAVLEMLIAGDGGTDYMH
                     EGVNASNPAEFTRDWFAWSNAMFSEFVLSMCGVYVKGSPLSK"
     gene            complement(23116..25773)
                     /locus_tag="U0280_000400"
     CDS             complement(23116..25773)
                     /locus_tag="U0280_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM2270362.1"
                     /translation="MTRKKAHIISHSHWDREWFLPLESLRFRLVTLMDEVEALLDKED
                     GFHHFHMDGQMIMLEDYLAVKPAKREKMKQLVADGKLRIGPWYMLQDAFLTSGEANIR
                     NLQYGLEMAEEFGQVEKIGYFPDTFGLYGQVPQLMRQAGFDTVVFGRGVNPTGFNNQV
                     FDSAFASKYSEMFWESPDGSKVLGILLANWYSNGNEIPVDKEAAKVFWDKKLADVERF
                     ASTDEWLFMNGCDHQPVQTDLAEALEVARELYPEVEFIHSHFEKYQEAVKAGLAPEKL
                     QTVHGELTSQQSDGWSTLANTASSRIYLKQANAKIERLLERLAEPISVMATEAGVQYP
                     HEYLAYAWKLLMENQIHDSITGCSLDEVHREMEARFEKVEQATMAIIQNAARQITEQI
                     TTNEAGIPITVFHAGGLEATRSIELELETDAIHFSEMHFELIPDELAKLPEQSFRLET
                     STGEEIPVVVESLGIRFNYDLPERKFRDSYFARKYKLTFAVENLPAVGYETIYAHPVD
                     LVNESANQTQDLFLENRFLKVEVAANGTYTILDKEKAIEIAGVGAYEDAGDIGNEYMF
                     KETGDNLRINTLHSKPAIRVLREDKLGKTIEINHEIEIPESASSAFAEEKRRLVWHPD
                     RQSERSENFTTFKITTELTLNKHDKQLTIRVKLNNNVDDHRLRVLFPTGKQTETHQVG
                     SVFEVVTRANKQVKEWTNPAKDNRKQGFVASGNIVVASVGLPEYEVSEHGDKLELTLL
                     RAVSEIGDWGDFPAYEAECHREITAEFHVFLTDDSDVANSTIPAQVNACLTPIFAFQH
                     KSATKENILAEKRDFAEWKTEAGFVFSAFKLAKDNQPIIRFFQTASEPKQLQTMQPWQ
                     KSTILEETTGDAKKQFTASPNEIITLKGV"
     gene            26016..29126
                     /locus_tag="U0280_000401"
                     /pseudo
     CDS             26016..29126
                     /locus_tag="U0280_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465539.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
     gene            complement(29195..29395)
                     /gene="cspB"
                     /locus_tag="U0280_000402"
     CDS             complement(29195..29395)
                     /gene="cspB"
                     /locus_tag="U0280_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein CspB"
                     /protein_id="HEM2270363.1"
                     /translation="MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEG
                     QSVEFEIVEGQRGPQAEKVTKL"
BASE COUNT         8294 a         6282 c         5363 g         9655 t
ORIGIN      
        1 caatgcaagg agtggcaata atggacacag ttagaaaaaa tcgattattt cagcattcta
       61 caatggcagc acttgttggt gggcttttta gcggaacaac gagtttcaaa gaattattac
      121 aacacggtga cctcggtata ggaacacttg accaatttga tggtgaatta attattttag
      181 acggagaagc ttttcaaata cgatcagacg ggcaagctta taaagtaaag ccagaagata
      241 cgacacctta tgcgagcacc actttttttg atgctgatac ttctttttcc gtttccgaac
      301 cgacatcaaa acaagcggtg gaagaaaaaa tcgcagaatt agtacaagga ccaaatgttt
      361 tttatgcagt gaaaatgacc gggaatttcc gttatgtgga tacgcgcgtt gtaccaaaac
      421 aacaaaggcc ttatccgcca ctcattgaag cggtaaaaga acaaccaacg taccattttg
      481 aatatattac gggtacaatt gttggttttt ggacgcccgc ttatattagc ggtattggcg
      541 tttctggcta tcatgtgcat tttattgacg atatgcgtaa aatcggcggt catgtatttg
      601 attatgaaat gctggaaggt accgtagaag ttgcgcaaca aacagaattt gaactacaat
      661 tacctcaaac gacggaattc ttaagaagtg atttaagtac gccggatatg ttggaacaga
      721 ttgaagccgc ggaaaattga taaagaaagc tcccaaatta aattgggagc tttcttttat
      781 tctgtaataa ctttatgaac aagggttggt gctgttgcgt ggtcggaaat ttgaatgttt
      841 tcgtagattt ttgcttttac gttttcgaca tcttcttggt cagcgaaaat cgttacgagt
      901 gattcgcctt ccttaacagc atcgcccact tttttgcgta gcattaaacc tactgctaga
      961 ttgatttcgt cttccttcgt tgcgcgacca gcgcctagga tcattgcagc aatgccaatt
     1021 tcatcggcaa cgatttgact tacgaagcca gatgatttag cgggtacttc gatttggtat
     1081 tttgcttgcg gaagtttttc tgggtgatca acaatgcttg catcgccacc ttgattggaa
     1141 aggaatgttt tgaatttctc aagtgctgca ccgttttcga ttacttcaat taatttagcg
     1201 cgggcttcgt cgagtgtttc cgcttgtttg gctagtacga ccatttgact accaagtaca
     1261 agaactaatt ctgttaaatc ttctggtcct tggcctttta atgtatcgat ggcttctttt
     1321 acttctaaag catttccgat tgcttcgcca agtggttggg acatatcaga aatgactgcc
     1381 atcgtatttc taccaacgtt attaccgatg cgaaccattg catgtgctag gttttcggca
     1441 tcctcgtcgg ttttcataaa tgcaccagca cctgttttta catcaagtac gattgcatct
     1501 gcgcccgctg cgattttttt actcataata gagcttgcaa ttagtggtat tgagtttacg
     1561 gttcctgtta catcacgaag cgcgtacatt tttttatctg ctggtgtaag attacctgat
     1621 tgaccaataa ctgctacttt gtcgcgattt actaggtcaa tgaaatcttt cttatctagt
     1681 tcgatatgga agccttcgat agattctagt ttatcaatgg ttcctcctgt atgacctaag
     1741 ccacggccag acatctttgc aaccggtacg ccaactgctg ctacgagcgg agcaagaaca
     1801 agtgtcgtcg tatcaccaac accgccagta ctatgtttat cgactttgat tccttcaatt
     1861 gcggataggt caatcgtatc gccagagcca accattgcca ttgttaaatc tgcgcgttct
     1921 tgatcattca tatcttggaa aaagattgcc atggctagag cacttgcttg ataatctgga
     1981 atttccccat ttgtatagcc atcaatgaaa aactgaattt cttctgttga caaagctttg
     2041 ccgtcccttt tcttggaaat aatatccacc attctcattt ctcttcaccc tttctttttg
     2101 tccactttag cattttatgt acctttattg agaacggtta cactttttaa gtaaaccgtt
     2161 ttactaaaca agaacatgtg cttaacatgc tcactataac ttactccctt actggttgtc
     2221 aatacttttt gtactactac ggttgattag tgaaatatcg agtaaacgat tctctaattt
     2281 ctcggttgga ttttggagat ttttcagtaa tagttcggca gcaatttcgc cgataccata
     2341 gattggttgc cgaatggttg taagtggcgg tgtcatatat tcggaaagtt caatatcatc
     2401 aaatccgatg acgctaagat cagtaggaat atgcaggttt ttttcaagtg cggctcggta
     2461 ggttcccatc gccattaaat cattggttgc aaaaatggca ctcagatttt cttggagtaa
     2521 cttttgcgtc gcaacataac cgccattcat cgtctgatcc ccgcttacaa tccaagtatc
     2581 ttttacagta agtttatagt ctttcatgca tgccaagtaa ccctcgtagc gttcatgtac
     2641 gttataaaaa gatgtatccg aaataatgat tccgatgcgc gtatggccta gtttgattaa
     2701 atgctcggtc gccatataac cgcctttgaa atcatcaatc gcgatattcc cttcttgcct
     2761 tggattccgc tgacgatcga gtaaaatata cggagaacgc ttctcttcca tgcgtttgat
     2821 aacacctgaa agcagaatat tagggctggc gataattaag ccatcgacag cccggtgcaa
     2881 taattcttct acatataaat cttcacgttc tttatcatta gaagagttac agagcataat
     2941 catgtaacct tctttattca agtaatcttc ggcccctttt accatttgtg aaaaaaaagg
     3001 atccgttact tccgggacaa tcattccgat ggtgtttgtg tgactaacaa tcatattttt
     3061 ggcgaaaaag tttggtttgt aagacatctc ttttgctgtt ttcagaactt tttcacgagt
     3121 taagtcgcta aatcgttccc ctttaccatt caaaatttga gaaatcgtcg taattgaaac
     3181 gcctgtcttt tctgctattt cgcggatggt tgcagccatt taaactcccc cagtcagatt
     3241 atctattctc cttattttgc cacatttaag aataataata aaggggtttc atccaaaatt
     3301 agtaattatc tggtttggct ggtttttcgc cggaaacaat tgcaacacct gcgcttgcgc
     3361 caatacgagt tgcgcctgct tcgatcattt tttctacgtc ttctttcgta cgaaccccac
     3421 cagatgcttt tacgccgatg tttggtccta cagttttacg cattaaggcg atatcttcgg
     3481 cagttgcgcc acctgtggag aatccagtgg atgttttaac gaagtctgtt cccgctttta
     3541 cagcgatttc acatgcgcga actttttctt cgtctgttaa taggcaagtt tcgataatta
     3601 cttttactaa tgcttttcct ttggcagcat cgactacagc gcgaatatca cgttctacta
     3661 gttcgtcgtc tttgtctttt agtgcgccga tattaataac catatccact tcttttgcac
     3721 cgttttggat agcatctttt acttcaaatg cttttacttc aggggtattc gctcctagtg
     3781 ggaaaccgat aacagtacat actacggatt ctgctccagc aagttgttca gcggataatt
     3841 ttacccaagt tggatttacg catacggaag caaaaccgta ttctctcgct tcttttgtta
     3901 gtgttaaaat ttgttctttc gttgtgtctg gttttaaagc agtgtgatcg atcattttgg
     3961 caattgtcat tttaaaaact cctttaaaat tggatttggt ttcatcatat cgcactacag
     4021 aacatttgta aactaattga tgaaattttg ttcaagtagt tgttttgcgg taaattggtc
     4081 ggtaataaaa tgattggcat aaccgcctcg aagtgcgcca tgaatcgctt ttatttttcg
     4141 ttcaccacct gcgacaagaa tggctgtttc tttttgcttt aaatcttgca agtcgatacc
     4201 aatggttcgt tcgtccattt tctcgtcagc gatttcgccg ccaattgtga aaaatcgcga
     4261 acaaatatcg ccgactgctt tttcttttaa gcgagccttt tcttgatcgg aaaaatagcc
     4321 taggcggaaa agcagggcct catcacgcac ggttcctact gtaaaaatag agatattggc
     4381 ttttttacca agctcgatga tattttttat atggcggtcc gcttctacca tttgtttagc
     4441 gagtggatta tcaaggacta caggaagtgg aagtgatact ggcgcggtgt cataagccgc
     4501 accgaataac gctaatgttt cggccgcata cgtattgaca tcagaatgac tcacaccacc
     4561 tttaagttgg acgactttta tttctgcttt tagcggggct agtttttggg caattttgta
     4621 catcgttgtt ccccaactta cgccaagaat atcgccatca tggataattt cttctaagta
     4681 ttcagcggca ctttggctga tttgcttggt gatttcgcta taatcatttg tttgactgaa
     4741 tgcaacggtg acatttttaa gttggtattt ttcttttaaa gccacggcca gttctgttag
     4801 gttagaaaat ggatcttgga cttcgatttt gacgtatcct tttgttttcg cgttttggag
     4861 taatctggaa acggtcggtc tggatacacc taggcgtgtg gcgatttctt gctgacctag
     4921 atccgcctga taataaagtc tcgcaacctc tacgctgagc tgttctttct gtttatccat
     4981 ttcatccctc catcgttttc tttttagtat aacgtaacag cggggatagt tcgagagaga
     5041 agataaaaaa aagacagccg cggctgtctt tttcctatta aaagtcttct tctatttctt
     5101 caagcggcgc ggcatattca taaattccta accgcccagt ttcggcaact tgattcgcaa
     5161 gttcttttaa ggatagcgtt tcacggctga tgaatgcttc taataaaagc ggaatattca
     5221 cgcctgcgac aagttctact gcatcaaaat tccgaagtaa ccgaacgagt acattaaacg
     5281 gagtcccacc ttttaaatca gttagaaata agatcccttc tgttagatcg agtttagcta
     5341 cttcactggc aattttcgcc tgtaaatttt ccgcggattc attcacttca aaaggaacaa
     5401 aacttgtatt ttcttgttta ccgcaaatca tttctgcaga ttgaatgagt tcttttgcgg
     5461 catttccatg ggtacaaaca aaaattgctt tcatttttca aaccgccttt ttaatagtct
     5521 aactgacgat aatatcttct gatttccatt ggatgacagt taattttttc cacgtgtacg
     5581 tcaatgcgat tatttactgc gtggataata aatggtgata acgctcctct gaatttggcg
     5641 gaaatacccg gcatatcgta atcttttgca tcaatgactg tataattggc acagatttgc
     5701 ggaatgaaat taactactcg ctcgcttaaa gaacgctggc tatcttctgt cacataaatg
     5761 gtaaccgggg tatcgcgttc tacaatttca aacatgccat ggaaaaactc gtgagactca
     5821 attgattttg ttttaatcca gtgttgctct tcccaataac acattgcgta agaataggtc
     5881 gcgccccact ggttcccagc accaacgaaa taatgaatgt cgtcttgatg atgttttagc
     5941 gcaaattctt gaccaaattt atccgccgct ttttctactt cgacaatccc ttcagcaaaa
     6001 tgttgatcca tttcttgata aaacgcatcg taatcttcaa attcgccagc taaatacata
     6061 aaacgatctg ctaccatgaa gaattttaat tgttcattta acggatagga gattaagtga
     6121 tctactaaag tcgcaagttc tgcttctgct ttatcaataa acccaaatac cgttgcgcca
     6181 atttcattac attttttcac agcatctacc acttcttgcg tacttccagt taccgatgaa
     6241 atgactacaa gggtatcttt agtaacacgt ttattgcctg tcgttagaaa cacagcagca
     6301 ttttcataaa aagtttctaa tgccgttttt tctttcatat gcaccactgc ttgcatggcg
     6361 gacgcgtatg taccgccaat tcctagccag caaatattac taaagccgcg gtcatgtatt
     6421 tggtcaacta cttcattaat ttgcgggcgt aattttagcg ctccttccat gttttctctc
     6481 actttttgtt catcaaattt tagcactatt cattcctact ttctttggtt aaattttgga
     6541 tttcgttatt tggtcaaatt ctggaaaagc ggatacttct aaattaattc cttttttctt
     6601 ggaaatttca aaggataata aatgaaccgg aatagtcata aacagcggtg tcagaagttc
     6661 tgctgcccgc acaccgagta ataaatcatc tgtcttttcc ccgcctgcat ccgcataaaa
     6721 tgttcggatt ttctttacat ggccttgtaa aaattgtttt aatttttctg cgcggtcttc
     6781 tagtaagcct tgaggttcaa ggaagataat atagtcttgc tcggataaac ctatataagg
     6841 tccgtgcata tattcttcta actccttacc aaaagctgta atccggatgg tttctgttac
     6901 ttttgtttct ccttcgcgcg ctacaccata agcagcgccg tatcctatga agaaaactcg
     6961 ttccgcttcc atcaattcct gtgtatgcgc gtctacccaa gctgctgatt tctctaccac
     7021 ttttggtaaa ttagcggtaa tttttttcaa ttctgcaatt tccgcttgat attcttcttc
     7081 caacattttc tcttgtaaaa gggctagctc aagcgccatt aaattcaaca tgagaatggt
     7141 tgcgctatag ccaagcgtga catatggcat ctcttctatc cccatcccga gatcaattgc
     7201 ccgcgtactt tctttcgcaa tcgggcttgt taagtcgctc gttaaagtga aaacaatgcc
     7261 accttgacgc tcaatttctt ttacgagatg aatagtggaa taactgtgcc caccttgtga
     7321 tatagcgatg tataaggtgt ttttgtttaa gtgaagcatg taatttcctg cagtagatgg
     7381 ttcttccaca tatacgggaa tggcgagttt atccgacata tataactgcg ctgcaaatgc
     7441 cgcattagaa ctagaacctg ttgcaaaaat aacaattgct tgatagtcca ctttctccat
     7501 ttgaatgacc ttttgtaaaa gatcttttcg acttcggatg atattttcat aaacactttg
     7561 ttccgaccgg atataataat ccatgttttt cattttttca cctacttatt ttaataaacc
     7621 tgtgaacgct cctaaaattc caattcctgc gattaataaa agaatccaat gtgcttttag
     7681 tcctttttta tctaaccaga aaataaagaa ggtgaagcca agtgctagga ttcctgggac
     7741 gataccgtca aaaacacttt gaatcgttac tgcatcatca ccagagccaa atttcattgg
     7801 catgttaatg ttcaccatcg tggcgaccat tgcaccaact acggccagcc cgataaccga
     7861 agcaccataa gacagtttat ccattaatcc agttttttga attttttcga taaaattagc
     7921 tccgatattg tagccaataa ataatccata ataacgagtc agaatagctg gaatattgaa
     7981 aataagaagg aacaaaatcg gccctaacat atttccttga agtgctaagg aagttccaat
     8041 acctgtagcg ataacgcgta aagttcccca gaagaacgaa tctccaatcc cactcagcgg
     8101 tcccattaac gctactttta tattattgat ggagtctgtg tcaaaatctt tatctttcgc
     8161 agattgttcc tccatcgcaa tcgaaatccc tagcggaaaa gtggaaagcc acggtgttac
     8221 gttataaaat tctaaatgcc tttgataaga agaaattcgt ttatctttat catttttaaa
     8281 aattttgttt aaggctggta gcatggaaaa tccataaccg agattggatt gtcgttcgta
     8341 gttccatgac cattccatcg tgaacgagcg ccagaaaact ttcattaagt ctttttttgt
     8401 taatacgtca gaactcttca tcttcataat ttatacctcc atcattcgca agtgctggct
     8461 ctgtattcga attctttgga ccattgtcat ttttaagcgt tgcataacct gttaaaatta
     8521 gcgctaaaca tgcagcgaaa atcgctacgc ctgttacagg aacttttaaa taaacagcta
     8581 atgcgaagcc aaatacgaaa aatacggcat tcttcttatt gaccattaat ttgagaagta
     8641 aagcaaaacc atatgctggc agtaaacctg tcgcaattcc aagtcctgtt ataacgaaag
     8701 ccgggatggc atcaagtacg ttttggatga ctgggcttcc gactagatag gacgttgcga
     8761 caataatacc aattggtaag ttgatcgata aaaatccgcc gagcagttgc attcgactga
     8821 ttcctcgtga attaccctcg agtgcgtatt tatctgcttt atgaacaaag taaggtaata
     8881 cgaaaatgaa gcatagattt ttaacgacaa gtacaaggga agcaatcgga attccaagtg
     8941 ctaatgctac cgctgtgctc tcgccagtcg aaatcgcaaa ggctgttcct agtatacttc
     9001 ctgaaataat ttctggagga atagatgctc cgatagaaaa tgatcctaca aaagctaatt
     9061 ccaaagttgc tcccataata atccccattt gtacatcacc catgataagt ccggcgagtg
     9121 tacatgttac cagtggtctt gatagcatcg atgaaccaaa taaatattct ccatttgcaa
     9181 gcattgctgc aagtgcaagc aaaatcgctg ttccaaactg ttccataatt tatcccttct
     9241 ttcgtctttt atgcttcaaa ggttactttt ttctcgttag gcacttgttg cataaataca
     9301 tctacatttt ctttttgaag ttcttttaac ttcgctactt cttcaggtgt taaattgatt
     9361 gctttggaaa aattagctgt tccttctcgt tgctttgttc cgcctagatt taacatcggg
     9421 attttaccat tcgtaccatg gattaatttg taagcgtctt caactgattc gacaacaata
     9481 agcatgttgt atttgtcagt gacgccggaa ttaatcgctt cgatactttc atcgatactt
     9541 ttcatgacta gttttgccgc ctcgggttta gcaagacgta ttgccgactt acggaaatcg
     9601 tccgccgcta ccccatcatt tgccactaaa attgtattta catctaaagc attaaaccaa
     9661 gacacagcta cttgtccatg tagtaaacga tggtccactc ttagaaattg aatcattttt
     9721 tcttcctcct tcgtattagt taaaatcaac tacatatttg gtcgactcag catcttcata
     9781 atgatattgg atggcaattg gcatctcgtt ttctgcataa aagacactac tcaatttgaa
     9841 aacaggatca ttttcgtcta tatgcatatt tttgatttgc tcattcccag ctaaaataag
     9901 ttgaagttcc tgctcaagct caaataattt atatttacct gaattaacaa gctcaataat
     9961 attaataatt tgaaaatcct ttgcttgtaa atcagggtat aaacttaacg gtaaaattaa
    10021 gcgatctagt gtgacaccat gctcactttt ttggacaaac ttgatagaat acacaagttc
    10081 attctctttt ataccaaact tctctgcgta aaattttcca gctttacgga tgtaaaagtc
    10141 tttaatatct ttttttagat tttcattggt atcggttttc ataacacctg tcatttctaa
    10201 aatgttctga gctgttagtt ttggttgaac gtatagccca acaccgtttt tacgaacaac
    10261 taaaccttct tcgactaata aatctaccgc gcggcgaatc gttgtccgac tgctagaaaa
    10321 aatttcttgc aaggctgttt cgttcggcat tagcattccc ggcttatatt catcgcgatt
    10381 aatactatct tttatttctg aagctattac ttcaaaaagt ggctttttag ctcccatttc
    10441 actcatcctc caagtaatca aatatgtttt tcgcattgat tttgtatttg atttgattac
    10501 caattagata ttgtttactg tactcaaaag gttcatcatt ttgatcaaat gctttactta
    10561 ctacttcaaa aagtggcgtg tttagtggta cctttaatgc ttctgctagc ttttcattcg
    10621 ctgatacaaa gcgcaattct tcgcgcccgt aggtaggttt aatagcaaac tgcttttcta
    10681 acacattgta taacgaggaa ttatttaaat cgattttctc aataccagca aatctcgtgc
    10741 tatcaataaa agatatttca taggaaaacg gcttattatc aactattctt cgccgaacca
    10801 atttaaacac cggcttatct tcacttaagt ttaaaaagtg gttcacctcg tctttgccgg
    10861 ctactatttc ttgtgacatt acttctactt tttgttctcc cggcaattgg ctgctcatgg
    10921 aattcatttg caaaatattg attgtttgct tttgattgat ttcgattcct tttcggtttc
    10981 ttttttggat gaccgcttct ttttcaaggg tatcaagtga ccgtctgagt gtagttctac
    11041 tgacacctag ttcgttttca agcgcacgtt ctgatgggaa acttgtttct ccggctgcta
    11101 ctttttcttg gataagctgt cttagttgtt cttcactttg cactgctggc gacaagtctt
    11161 tatattccat atttccacct cttttttcaa atcatctatc tatttcactt tttaaaaaga
    11221 tacagcttca aacattttta ataccacttc attgtaaacg gttgcatttt gtttgtcaat
    11281 agtcttttta cataaaaaaa agcatgagtc agatttttcc atccaactca tgctccattt
    11341 gattatttag ttgtaggtag tgctccaact actgggtgcg ggatatataa ttcttctaga
    11401 tagttaactt ccgctgccgt taattgaata tttagcgcct ctaccgcgct ttccagatga
    11461 ctttcttttt gtgcaccgat gattggcgaa gtgatttcat ctttatttaa tagccacgct
    11521 aaagcaatct tatctcgaga tacttgatgt gtttccgcaa gttcagccac acgttcaata
    11581 atacctctat ctgcattcat catgtcatcg tatttggatt tttgaactgg atccgtttcg
    11641 gaacgattgg ttgtttcatt caaatctcgc gttaatcgtc ctgatgctag cgggctgtat
    11701 ggcgtaatcg caattttttc atcgcgacaa aatggaatca tttctcgctc ttcttcccgg
    11761 taaatcatat tgtaatgatt ttgcatggaa acgaattttg tccaaccgtt tctttctgcg
    11821 acgcgttgtg ctttttgaaa ctgccaagca tacatagcac tcgctccaat gtaacgcgct
    11881 ttcccggact taacgacatc gtgtaaagct tccatcgttt cttcgattgg cgtattttca
    11941 tcaaaacggt gaatgatata taaatctaca taatccgttt ctagtcgttt taagctatgg
    12001 tcgatttcgc tcaaaatggt tttcctggat aagccaccac tattcgggcg atccgggcgc
    12061 attgtttgtt gcaccttggt tgctaacaca acatcatcgc ggttagcata gtcttttagt
    12121 gcacgtccaa cgattttttc actttcaccg taagaataaa tattcgccgt atcaaagaaa
    12181 tttatgccta aatcgagtgc tttttttatg atagggcgac tgttcgcttc gttcaaaacc
    12241 catttatgaa tccatttgtc tttatcaccg aaccccattg tccctaaaca gattttcgaa
    12301 acatccatgc cagtgttgcc aaatttaaca tattccattc aaaaccctcc tagttaattt
    12361 ctagtactat tacagcataa accttgaagt ccactccaag tcaaccttta actataaaaa
    12421 aatctctcgg gaaatccgag agatttttaa cgttttaata aaattggtca ggtagtaaag
    12481 tttcgccgag tttgatgtta tcacggtaat caattggaat atctacaacg acgggacctt
    12541 ctgtttcaag ggcttctttt aacacatcac taagttctga cggtttagtt acgcgaagtc
    12601 cttttgcacc gaagctttcg gcgaatttaa caatatcgac atcaccaaaa cgaactgctg
    12661 cttctttgcc gtatttcatt ttttgttgga aggcgaccat gtcatagcta ccgtcattcc
    12721 atacaaggtg cacaagtggc gcacgcaagc ggacagctgt ttctaattcc atggcagaaa
    12781 ataggaagcc accgtcacca gaaatcgaaa ccactttttc acccggatgt acgagtgttg
    12841 cagcaatccc ccaaggaagc gcgacaccaa gcgtttgcat accgttactg aaaagcagac
    12901 ggcgtggttc ataggaccgg aaatgacgtg ccatccaaat ataatgtgaa ccaacgtcga
    12961 ctgtcacagt tacgttgtca tcaattgccg aacgcagcgt ttgaatgacc gacaacggat
    13021 gtactcggtt agtttcatca ctttctggtg gaacatctcg ttcttctaat tgagcatgaa
    13081 gttcttttaa ggtttcaagt tctttttccg ctaattctaa accgctgaat ttcgcattca
    13141 ctcggtctaa agtaagcgcg atgtttccga ctaattccgt cacaggttga tagtagtggt
    13201 caatatctgc tcggatgtca tctaaatgta caatcgttct atcacccgaa gcattccagg
    13261 cttttggatc atattcaatt ggatcgtaac ctactgtaat aactaaatca gctttattta
    13321 gcaaaatatc ccctggttgg ttgcggaaga gacctacacg cccaaagaaa ttatcttcta
    13381 aatcacgtga gatgacacca gctgcttgga aggtttctac aactgggatg cttgtttttt
    13441 ggagtaggcg acgaatcgca ccagttactt ccgggctaga tgctcgcata cctaatagca
    13501 atactggtaa tttcgctttt ttcaaacgag caacgagttt cgcaacttgt tctttggaag
    13561 ctggaccatt ttctggttta gcaagtgggc gaatcgcttt tactggtacg tttggttcat
    13621 tcacgatatc ttgtggcaaa ctgacaaaag cagcgccttg gtttggttct gccgccgaac
    13681 gaaaagcgtt agtgattgct tccgggatac tttcagcgtg aactacttct tcgctatatt
    13741 ttgtaattgg acggaaaagt gctgcattat ccattgattg atgtgttttt ttaaggcggt
    13801 cttgcctggt tacatttcca gctatcgcaa cgactggatc tccttcagca gttgctgtta
    13861 caagtccagt ggcaaggttc gatgcgccgg gtccactagt tacaagtaca acaccaggtt
    13921 ttccggttag acgaccgata gcggcagcca taaacgccgc attttgctca tgacgactga
    13981 caattaattc tggtccacgt tcttccatca catcgaaaac tttatcaatt tttgctcctg
    14041 gaatcccgaa tacatgcgta acaccttgat taattaagct gtctacaact aaatccgctc
    14101 ctgattttcc ttgtgttatt actttttctt ggtctttttc tagtttcgcc atcgttatca
    14161 tccttttgtt atataaatta tttaaatttt aatagtacag attttataaa aacctcattt
    14221 acaagactaa ttatactact caaaagaatt tttgcaaggt tactgactca aaaactgtta
    14281 tacaattata taaaaactgt tatacaaaaa aagaaggact tagataaact aagtcctttc
    14341 tggtatttat tcttgtgaag cgcggaattc atcgtattgt ttttgcattt ctttcattac
    14401 ttttttcata cctgcatcat ttaacttcgc tttgaatttt tccgtatatt caacaggatc
    14461 aacggttcct gtaagaagtg ccggcgcaaa ttcattacac acattggtaa tcgacgctat
    14521 ttcagttcga actttagagg agtcaaaata gaaacctaag cccggtgatg cgactgattt
    14581 tctattgaac tctttaaatt gatcccattt atctgctggc tcatcttcat ataattttag
    14641 aatgaagtga tttccaagcg catacgttgg catgctgtaa cgttccacac gtgctggtag
    14701 atcttgaatt ttaccgtcat ctaactcttt ataatgggtt ccttcaattc ctttatcaac
    14761 taaattacgt aaatattcat ccgtgttaag taaatcaagg aatttcactg cttcttccgg
    14821 gtgttggctc gtaacagaaa cagcttgaat cgcaccagtt acagagttat ttttgatgat
    14881 aggagtttca gcaattggct gtgtgactac tttatatttg ccgcctgtat ttttatccca
    14941 aatattttct gcatatggtt ggtatttttc gattcgcaca aaccagtttt ctttatcgta
    15001 tgaccacgga tctgtggagg ttgcgatatc ttttgtgaca tatccttttt ggtagaagct
    15061 atgaagcgat tttaggatat ctaatgtttc gggttgctca tagaagttga cgattttgcc
    15121 agtgtcttca tattgattta ctgcaaaagg aagaggtact gcattatcaa tcaaatagtc
    15181 atatgggaaa gctggcttaa agtctttgtt cccgccgatt ggtgtgatac ttggttcgtt
    15241 ttctttaatt gtttttaaca ttggttctaa atcgctaaag ttttttactt tcgttacgtc
    15301 cattttatat ttatcgacaa gatttttgtt aaaaacgtat acttgttgct cgccgacttc
    15361 tttgttcgaa ggaacaccgt aaatgtttcc gtcaatggtt gcaccttccc aaagtacatc
    15421 atttaactcg gctttcatat tcttgccttc tttatctaga tatttattta atggcaagaa
    15481 tgcgcctttt tgtgagtaag aaacgaattc tcccgctgca gagtaagcaa tatcaaagtt
    15541 ttctccggag ttaataacgg tttgcatccg tttaccgtag tcgccccagt caatttgtgt
    15601 catttctact ttgacgccaa ttttttcttc tgtatattta tttacttctt tcattacttc
    15661 ttccgtgtct ttttgtggcg ttccaatcat gtaccatttc agtgtcggaa cttcatttgc
    15721 atctgccttc tcatcgctcc cgcacgcgct taaacctagt agcaagcaga gtgatgcgat
    15781 gattactccc catttcttct tcattaaatt ccctccatct tttttattct tttacgccgc
    15841 caattgtgag tccactaata aagtattttt ggaaaaacgg ataggtgatt gcgattggta
    15901 atgtcgaaat aacaaccatc gccatttttg caccgtcttg tggtatggac ttaaacgcgc
    15961 cggcagtata agcaatttca gagttttgtc gcatgaattc taagttgttt tcaattttca
    16021 taagtagcga ttgtagcggc actaaattcg gattatcaat ataaagtgac gcttggaacc
    16081 agtcattcca gtatcctagt gtagagaaaa gcgcgattgt cgcaagccct ggtaaagaaa
    16141 gtggaacaac catttgtaaa aagatccgta gttccccagc gccttcaatt cgagccgcct
    16201 caagtattgg ttctggaata gaccgtaaaa agaacgtgcg cataatcata atgtaaaaag
    16261 cattcattgc tagtggtaaa atcatcgccc aaatgctatt tcgtaagtgc aaaaattgcg
    16321 tcatcacgat ataggcaggc accatcccgc cactaaatag catggtaaaa aaggcaataa
    16381 atgtaaattg acgacgatac ttaaattgtg gtcttgatat cgcgtaagag taaagagcaa
    16441 tcattgcaac actacatacc gtaccaatta ctgtaactaa aatggtaata ccgtatgatt
    16501 gtaatagttg tcctttcatc ttccataagt actcatacgc ttccatgctc cactctttgg
    16561 gtattagttg aaagccattt gctgccagag atgattcact agaaaaagaa ataacaataa
    16621 tgtacaaaaa tggaaaaata caaatgagcg ctaggaaagc gagcataata ttcatcgcta
    16681 cgttcatctt tttcccaaaa ccaataatgt ctttagctgg tttatttttt gctggttttt
    16741 ccatttcgcc tcggacttgt tctatttcac tcactgcttc aagctgttct gccaaagcac
    16801 ctcgcctcct tttctaaaat aagccatatt ctggatttat ttttttcacg atgtagtttg
    16861 tgagtagcac tagaataaag ccaacgatgg actgatagaa gccagctgcc gcactcatac
    16921 tcatatctcc aagtgacgtt aaacctcggt atacatatgt atcaataaca tccgtcacag
    16981 gataaagtgg tcctgaattt cgcggtagtt gataaaacaa accaaaatca gagttaaaaa
    17041 tcttcccgac attcaaaatc gttaaaataa ccatcagtgg cgttagtgca ggaattgtta
    17101 catgcctaat ttgttgccat ttgccagcgc catcaatcat tgccgcctcg tagtaggtcc
    17161 ggtcaattcc ggcaattgct gccaggtaga caatacttcc ataacccaag cctttccaaa
    17221 cattcatcat gataaggata aacggccagt atttcggatc gttataccag gaaatcgggt
    17281 cctgtccgaa tgcaagtaaa atattattca tcagcccact gtcttcgctc aaaaaactga
    17341 acaagaaata gctgacaact acccatgata aaaaatgggg gaaaagcatt cccgtttgat
    17401 aaatttttgc tcctcgctta tttagtaagc tgttgaaaat aatagcaagt gctacaccaa
    17461 gaaacagccc aacaataata aatactaaat tataaagaac ggtgtttcgg gtaataataa
    17521 aagcgtcgtt tgtttggaat aggaatttaa aattttcaag tcccacccag tcgctactca
    17581 taatactgga taaaaatcct ttcccatcaa ttttgtaatc tttgaatgca atcactgtac
    17641 caaacattgg taagtatgag aaaaccagga accaaaggac gcctggaagt accattaaaa
    17701 gccaaatccg attagctcga atttgtgata aaactttttt caatccattc acccctcttt
    17761 tttgtaagtg ctttcaacat ctttagttta tcgtttttac gtggggttaa atagttgcgg
    17821 atgtttagat ttatagacaa atattagaaa taattttatt gatggatttt tcggtagcga
    17881 tttggtgttt cgcctgtgtg ctttttgaac tggcgataaa aataagccat atcggtataa
    17941 ccagatttcc cagcgataat ggttaagtta tcttttgttt gcagtaattc ttcttttgca
    18001 tagttcaccc ggtagcgatt tagataatcc gtaaagtgtt cgcccatttc tttttgaaaa
    18061 agttgaccga gataaacagc attaatatga aagtcgttac cgagtgtttt taaagacatt
    18121 ccttctgcaa aatgttccgt gatataggaa agcacatttt gaataatggg gctttttgat
    18181 tcatctgttt gttttttgcg gttatagtaa cgaatagcgt aggctagcgt cgcctcttcc
    18241 aatccctcaa tactcgtttc ttcggcaatt ctccccatgg attcgcttaa ctctttcgga
    18301 tccgattccg ccatcatcac aagcagctca ttcaaaatat ggagcatttg atgcgggtcg
    18361 ctttccagct tgtggtcatt ccattcttta aaaaagtgct ggatccacgc tttaatttct
    18421 ttttcgttat tcatcactag aagcttcgcg agttgatgtt gctttctttt cggacgccaa
    18481 gtatgtttgg tacgtttttg ataggcaatt aggctaccag gctcttgcac aagtcgttct
    18541 ggaagcaacc tagtaagttg gcgaaaggct tgcgggtaca tcatttcacc ttgtactttt
    18601 tcactgataa acaggtaaaa agcttcattc gaaaggcgtt ttttcacatc ttgatgaatc
    18661 gctaaaattt gttcggatat cgaagtttgt tcggttattc ctataattat ttcattttct
    18721 ggcgtaagta gcataaatgg aaagtccttc cgatattgtt cagaaagatt tttccattca
    18781 gtcagattga tttcttttgt tggttgaatt tggatgagaa cggcattttc ctttgaattt
    18841 aatatcatat cgtataatgc tagtcgctct tcccattctt ctttgttaat tcgtaaattt
    18901 agccaacgcc aaatcgtatt gtcccgtaaa atgtaatacg cttcttccct tggtatcaca
    18961 ctgtctgtca attgtttttt ctctatttgt ataaacgttt cttttaattc ttgttcattt
    19021 aaaggtttta gtaaataatt ttcgattccc gctgaaagcc cgcgtttcac ataatgaaaa
    19081 tcttcaaatc cggagagaac aatagtttta gtcgttggtt gccgcttttt ccattcgtcg
    19141 attaattcta aaccattcat tacaggcatc tctatatcgg tcaaaaggac atctacgtct
    19201 tgattagcaa ataactctaa ggctattgcg ccatttttag ccgttccaac aatttcaatt
    19261 gattgctcaa attctggaat aatactttct aaacctttga gaataagggg ctcgtcgtct
    19321 actagtacaa tttttagcat tacttttctc ctcccgtatt ttgaggtact tgaaacagaa
    19381 tgatggtacc ttcatttgct ttactcttga ttgttaatcg ataattttct ccatataaaa
    19441 gctgcaatcg tttgtttaaa ttagctagac cgatgtggct cgtctcatct ttactttcaa
    19501 ttgttgcttg cacttctttt aatttctctg catcgattcc cgaaccattg tcttcaattc
    19561 taaattgtaa attgtcattt tctgcagtga ccgtaattac gactattgga ttttgatttt
    19621 ctttaaaagc atatttgaaa aagttttcaa taagcggctg cagagcaaac cgtggaatct
    19681 gcgtatgatt gaaacgtttt tcaatattga tttccagctt aattggctgt tcgtggcgca
    19741 tttccataaa gcggacatat tgtttcacgt aattgatttc ttcacctaaa gtggtgattt
    19801 cacggtgatt agctgtgtag cgcagtagtg ttgcaagttg ataaatcata tcacttgtcg
    19861 ctttggctcc ttctacgcgt gcgttcatcc taattgcttc tagtgaatta taaagaaaat
    19921 gaggttgcat ttgaccttgg agtgccttga gccgcgcttt ttgttcttcc atttctaggc
    19981 tatagacctt cttcacataa gcatcgaggt tttctgtcat atggttaaac cgctcactaa
    20041 tcatcgtcag ctcatccccg ttattatcga ccggaagctt tgcatcaagg gtccccattt
    20101 ccacccggtt catcccgcca ataatcgtta aaatccgctt agaataacgc ctactaataa
    20161 caaaattaat gctaatagaa aaaataacta ataacagccc aataccaaat aaagtaagtt
    20221 cgatgagcgg cgcgctgtca tctgttactc gatataaaaa cgtattgttt ttcaagccac
    20281 ttgtttcatc ttccgttttt tgaaagtata cttttttgtt gtcagcatga agccatcctt
    20341 gtttttcagg cgtttggatt tgtttctttg ggtggttgga atataactcg actcccttcg
    20401 tgttttgtat ttgaaaaatc gagttttgat aatctttcgt aatccatttg cttagaaaag
    20461 tcggatcaat gtaaagaagc agataaccca tttgttttaa tgtgcttgga tcattaatcg
    20521 gctgtttcac aactatttta ttttcgattg tataaaaagt cccttgcttt gatgcttcgg
    20581 tggcgatatt tgcctccccg tatgtatcaa ccgtttcttt ccattcacgg taacggctcg
    20641 gaaatgtata agagtaactc ccatcatccg aaatgagctg cagcgcgata atatcttcat
    20701 catacgaaaa ataagaatgt aaatacgttt gcatatctac agaatagaaa tttttacttt
    20761 taaaatagtt atcgatattt tgctctgtgt agctaccgta atcatttgtc atcgcgattt
    20821 gaacatcctg catcaaatcg ctattacggt aaatatcttg cgttaaacta attaatgcct
    20881 tttgcttctc cgtaagtgca tcgagctgtt tattcgcaat ggtttccgct ctttggagat
    20941 tggtatctag ctgaatatta gtatagtact tataaatgaa aaaaagtaac aagctcaccg
    21001 taaaaagact tgttaaagaa aaaattaaca acatcctttt gaaaacgcgc ttgcgtggta
    21061 attcttgtgt catgctcatt cactgccccc tcttcttttc tgattattgc atactatcac
    21121 caataatgta aggggttact taggctccat ttgcttgaag cggtgtaaat tgattttcat
    21181 tatccaataa cttggtaaaa caccagaaat aaacaaaata aaagcaggca ttttcgaaat
    21241 taaccatgcg caaaaaacaa gaccaaccac aatcataaaa gtatttttaa agctagtaat
    21301 cgcgagcaag aacgcttgcc cgacataagc gcgcacattt ttcatttgga agtggacaaa
    21361 cactgtgaaa tactgcaaaa acgcaattcc cacgagaaaa agcaagaaca ttaagaagaa
    21421 gtataaaatc gtcgaccaaa aaccttgcat taattcaaaa acaatccgca aatccgcata
    21481 aaggaaaatc cctatcagcg caaaaactgc acccgctaaa ttagccgaaa caaacacctg
    21541 tttataagtt tgccaagcag atttccaaac tggtacatct aaatcgcccc gcgcccattt
    21601 tctcgttatc gtaaataaag caaccgttgc cggcataaag ccaagcacaa tcccgccgat
    21661 caatacgagg aaaagccata ctaaatttgt ccagacgagc cggataatcc agtcgctaat
    21721 aactgaaaat ttatcaataa gtttcattct ttttctctcc tttgatagta agagaaagcc
    21781 tgagttttcg cccagacttt tcttttttta tttacttaat gggctgcctt ttacgtacac
    21841 accgcacatg cttaaaacaa attcactaaa catcgcattc gaccaagcaa accagtcgcg
    21901 cgtgaattca gccggattcg aggcgttgac accttcgtgc atataatccg ttccgccatc
    21961 tccggcaatc agcatctcta aaacggcttg tttttccgct tctgtttctg ccgttaatcc
    22021 ttcgatgctg agtgcaatcg gccagacata atgatcaggt gtatgtggac taccaattcc
    22081 tgtaagtaca ctaccttcga caaaataagg attttctcgg cttaaaatta gttttctagt
    22141 cgcttggtat gcaggatcag ttttttcgca aaaaccaagg tatggtgcag cgagcaagct
    22201 tggcacatta gcatcatcca taaataattt acgccctgtt ccatcaactt catacgcgta
    22261 aacatcaccg taatacggat gcgcttgttt cgcataggtt tcaatccctg cagcaacttc
    22321 ttttcgtaaa tctgcgctat ctttcagcaa ttctttatca tccgggtaaa acgccgctgc
    22381 gatttcttgg acgtaatcca tcactacaac taaaaacata ttactcggta caaggtagcc
    22441 atacatacat gcgtcatcac ttggtctaaa gccactccaa gacataccag tatagcttac
    22501 atccgttcct tttccgttat tatttaaggt atctgattga cgcacatttt ctcgttcaaa
    22561 acgatacgga ctttgctctg tatgtttttg ttcgatttta aaaacttcga tgatttgatg
    22621 caatgctttt ctaaattctt cggtaaaatg acctgtacgg ttggtacttt tccataatag
    22681 gtacgctaat tgaatcggat agcaaagtga atcaatttca tattttcgtt cccaaaccag
    22741 gtcggtcatt gctgttttgt cgttttgaaa tcccgcacca ttcgctgatt tattaaaagc
    22801 attcgcgtat gggtcatgca aaatacagtt agtttgtaac tttacgaggt tttcaataac
    22861 agtcgccatt tcttcgtctt cttccgccac aattaaatat ggtctaattt ggcttgtaga
    22921 atcgcgtaac cacatcgctg gaatgtctcc tgtaataaca aatggaagcc cctcttctgt
    22981 ttcttgtaag gtagttgtat acgtattcgt aaaacatttt tcaaacatgc ggtgaagttt
    23041 ttcgttttct ggaaaagtca ttttcacttt ctctatccat ttgttaaaac ttgctggtac
    23101 tttgtttgtc atctattaca ctccttttaa agtgatgatt tcgtttggac tagcggtaaa
    23161 ttgtttcttg gcatctcccg tcgtttcttc caaaatagtc gatttctgcc acggttgcat
    23221 cgtctgtagc tgttttggtt cacttgcggt ttggaagaat cggataatcg gttggttgtc
    23281 tttagcgagt ttaaatgctg agaagacaaa tccagcctct gttttccatt ctgcaaaatc
    23341 tcttttttct gcgagaatgt tttctttcgt tgctgatttg tgttggaatg caaaaatagg
    23401 agtcaagcat gcgtttactt gtgctgggat ggtgctattt gcaacatcag aatcatctgt
    23461 taggaaaacg tgaaactctg ctgtaatctc tcggtggcat tccgcttcat atgccgggaa
    23521 gtcaccccaa tcgcctattt cagatactgc gcgaagcaac gttaattcta gtttgtcacc
    23581 atgttcgctt acttcatatt ctggtaaacc aacacttgcg acaacgatat ttccactagc
    23641 aacaaagcct tgttttcggt tatctttagc aggatttgtc cattctttga cttgtttatt
    23701 cgcgcgtgtt actacttcaa aaacacttcc cacttgatgt gtttctgttt gttttccagt
    23761 cgggaaaagc acgcggagtc gatggtcatc tacgttgtta tttagtttca cgcggatagt
    23821 taattgttta tcgtgtttat ttagcgttaa ttctgtcgtg attttaaatg tagtaaaatt
    23881 ttccgagcgc tccgactgcc ggtcaggatg ccatactagg cgacgttttt cttccgcaaa
    23941 ggcggaactt gcgctttctg gtatttcaat ttcatggttt atttcgattg ttttgccgag
    24001 tttatcctct cgtagtactc gaattgccgg tttggaatgg agtgtattta ttcgcaagtt
    24061 atcgccggtt tctttaaaca tatattcatt accgatgtcg cccgcatcct catatgcccc
    24121 aacacctgca atttctatcg ctttttcttt atctaaaatc gtatacgtcc cattcgccgc
    24181 aacttccact tttaaaaagc gattttctaa aaacaaatct tgtgtttggt tcgctgattc
    24241 attcaccaaa tcaaccggat gcgcgtaaat tgtttcataa ccaaccgctg gcaaattttc
    24301 cacggcaaag gttagtttgt actttctcgc aaaataagaa tcacggaatt tccgttctgg
    24361 taaatcgtaa ttaaatcgaa tgccaagcga ctcaacaaca accggaattt cctcgccagt
    24421 acttgtttct aatcgaaaac tttgctctgg aagtttcgct aattcgtctg gtattaattc
    24481 aaaatgcatc tcagaaaaat gaattgcatc tgtttcaagt tcgagttcta tggatctcgt
    24541 tgcttcaagg ccacctgcat gaaataccgt aataggaatg cccgcttcat tcgttgtaat
    24601 ttgttccgtg atttgacgcg cggcgttttg aataattgcc atagtcgcct gttcgacttt
    24661 ttcaaaacga gcttccattt cacggtgcac ctcatccaaa ctacatcccg tgatactatc
    24721 atggatttga ttttccataa gtaatttcca agcataagct aagtattcat gtggatactg
    24781 gacaccggct tctgtcgcca tcacggaaat cggttcagcc aaacgctcta ataaacgctc
    24841 tattttcgca tttgcttgtt ttaagtaaat acgtgaagat gctgtgttgg cgagtgtaga
    24901 ccatccatct gattgttggc tcgttaattc tccgtgaacc gtttgtaatt tttcaggagc
    24961 aagaccagct ttgacagcct cttgatattt ttcaaaatgg ctatggataa actccacctc
    25021 aggataaagt tcccgtgcca cttccaatgc ttccgctaaa tcagtttgca ctggctgatg
    25081 atcacagccg ttcataaata accattcatc cgtcgatgcg aaccgttcca catccgctaa
    25141 tttcttatcc cagaaaactt ttgcggcttc tttatccacc ggaatttcat tgccattgga
    25201 ataccaattt gcgagtaaaa tccctaatac tttcgacccg tccgggcttt cccaaaacat
    25261 ctccgaatat ttcgaggcaa aagcgctatc aaaaacttgg ttgttaaagc cggttggatt
    25321 gactccacga ccgaaaacga ccgtatcaaa accagcttgg cgcatgagtt gtggcacttg
    25381 gccatataaa ccaaacgtat caggaaaata accaattttc tctacttgac cgaattcttc
    25441 tgccatttct agaccatact gcaaattacg aatattcgct tctccacttg tcaaaaaagc
    25501 atcttgcaac atgtaccacg gtccgattcg cagttttccg tccgcaacca gctgcttcat
    25561 tttttctctt ttagcgggtt tcacagccaa ataatcttct aacataatca tttgcccatc
    25621 catatgaaaa tgatgaaatc catcttcctt atcaagtaat gcttctactt cgtccataag
    25681 tgtaacgagc ctaaatctca aactttccag tggtaaaaac cattctctat cccaatgaga
    25741 atgagaaata atatgcgctt tctttctagt cattttgccc ctccaaatat cctttttgta
    25801 ttcgctttca agctaagtat agtaagggct aaagtgaatt gcaatgctag gtgaaaaact
    25861 actatgaata atccattttc ccttgatttg tccattacaa gaaagcgtaa tccttcccac
    25921 tctaagagaa tctcccagca tacccaaaaa aagccaaatt gacatctttt gccgctatga
    25981 tatattgaaa ccgttctaga caaaatagaa aggatatgag tatacatatg tttttcacta
    26041 aagataaact acgaggccgt ctggatgaag tcgcgcttta tcgttacgaa aaaacttatc
    26101 ctatccgtaa tttccaagca gccgaggata tggatggaga aatcgctgca cgaccaaata
    26161 acgtcttgta tgataacgaa ttgactatcg gggaaaactg gtcaggtagg gaccgttatg
    26221 tctggctcaa aacaaccatt acttttccag acaccaaaac tgacacgcgc ttgattggct
    26281 actttgactt tgggaatacc ggcgacggcc acaattccgg ctttgaatca ctattatttg
    26341 ttaatgggga accatatcaa ggcgtcgatc aaaatcaccg cgaagttctt ttcccagata
    26401 gttttgctgg aaaaaaggtg gaactggtct tccgtttatg gtccggactg gaaggcggcg
    26461 gcactcctac tatccagaca caccagttaa aagaagcctt tattggatac ttaaatctcg
    26521 tcattgatga tttgtatttc acgagtaaag caactttaaa aacactcgac caactcgaag
    26581 aaaaaaatcc aacccatgcg ccgctcctcc aagcgattaa tcgcgcttac cttgcaattg
    26641 attggagtac accaggatcc gaacaaaacc ttgcctcgat ggcaacagcc aaccaaatct
    26701 tacaagccgc actggaaaaa atgccgaaaa attttcctat caaagtggcg gctgttgggc
    26761 atacacatat agatgtagca tggctatggc gcttaaagca tactcgcgaa aaagccgcac
    26821 gatcattttc gactgtgctt catttaatgg aagactatcc tgaatactta tttctccaat
    26881 cgcaaccgca actttacgcc tatatcaaag aagattaccc agaaatttat gcgaaaatca
    26941 aaacgaaaat tagcgaagga aactgggaag ctgacggtgg aatgtggctt gaagcagatt
    27001 gtaatattcc tagcggtgaa tccctcgtac ggcaaatgct ctacggtcag aaatttttac
    27061 gcgaagaatt tggtaaacct tctagttttc tatggttgcc ggatgtattt ggctatagct
    27121 gggctttacc acaaatcctt cgtaaatcag gcataaagac ttttatgaca accaaaataa
    27181 gctggaatca atataatcgt atgcctcatg atacgttcca gtggcgcgga attgatggta
    27241 cagaaatttt gacccatttc atcactgcac cagaaaaaaa tagccgcatt tcaacctata
    27301 atggcaaaat gacagcacga gaacttgttg gtctttggga caaatatcaa gataaagagg
    27361 taaaccaaga attactactt gcttacggct acggagatgg tggtggcggt gtgaaccgag
    27421 aaatgctaga gatgcgccgt cgttatgata cgatgccagg aattcctgaa gtaaaaccaa
    27481 aaagtgctac ttcttatttc aacgatttac acgaaacgat aaatacgaca gaccaatatg
    27541 ttcatacttg gaacggcgaa ctttacttcg aatatcaccg cggaacttat acgagccaag
    27601 cctttacgaa aaaaatgaat cgaaaaatcg aactcggctt acgaaatagc gaatggcttt
    27661 ccgttttagc aaatctaaaa caaggaacgt cttacccaac tgaaaaatta gcaggcattt
    27721 ggcaaatttt acttcgaaat cagtttcatg atattattcc cggctcttcc atcaaagaag
    27781 tttatgacga cgctctaatt gagtacacgg aagctatgac ggaaaataat acgttaattt
    27841 ctaatcaatt gaccaattta actacagatg ccgatgaaaa aataacactt tggaatagtt
    27901 ccacttggtc cagaccgcga tacatcgaaa tttcacccga caatcaatcg aaccatttag
    27961 ccttttatga tgaaaataat gctccactgc ctgcgcaaaa attggtaaat aatgcctggc
    28021 ttatccagca tccaaacata cctgcgcttg gtgctacaac tatttctgtt aaagaaacag
    28081 caaacatttt agaacaacca tcttttcact acaaaaataa ccaattggaa acacccttct
    28141 atcaaatcaa atggaataaa gccggacaat tcacgtccat ttttgacaaa aaaaataacc
    28201 gccaagtaat agcggaaaat gcgcgaggta atgtatttca attatttgaa gataagccga
    28261 tgtggcatga cgcctgggat atcgacctat tctatcaata aaaacaaaaa gaaatcagcg
    28321 cgctagattc agttgaaata accgagaacg ggccactcca attcactatg aagcaagtgc
    28381 tacattccga aaaatctcaa atcactcagt ggattcattt ttatcacgag agccctgaaa
    28441 tcagatttga aaccgaggtc gactggcgag atcgtaacca gttgcttaaa gtcgccttcc
    28501 ctgtcgctgt gcatgccagt gaagctagct atgacatcca attcgggaac gtcaaacgcc
    28561 caacgcactg gaatacaagt tgggattatg ctcgctttga aaccgttgga catcaatggg
    28621 ctgatctttc ggagaaaaat tacggcgtca gtttgttaaa tgattccaaa tacggctatg
    28681 atattaaaga ttcaactatc cgccttacac ttctgaaagc agccggttat ccagatccag
    28741 atgccgattt aggaatccac caattcactt attcgctcta tccacatcaa ggtgattttt
    28801 tagacgggga aacagttcaa gcagcatggg aattgaataa tccaattttc acttccaagg
    28861 gggaaattga aactttttct cttttccaag tgaccaatcc ttacgtgatg attgatagca
    28921 ttaaacaagc cgaggacggt gatggtatca ttttacgatt gcatgaattt gcgggaactc
    28981 acggcgaagt aacaatcaca agtggttacc cgattacctc aatcacagaa tgcaacttac
    29041 ttgaggaaaa cgaaacatcg ctttccaatc cgacctttgc agtagctcca tttgaaataa
    29101 aaacataccg aattcattta gcataaaaaa acacgcagca aggcttctcc ctaagaagtc
    29161 cgctgcgtgt ttttattagt ttaacgtgaa cagattaaag tttagtaact ttttctgctt
    29221 gtgggccacg ttggccttca acgatttcaa attcaacgct ttgaccttcg tctaaagttt
    29281 tgaatccttc accttcgata gcgctgaagt gtacgaatac atcatctccg ccttctactt
    29341 cgatgaaacc gaagcctttt tcactgttaa accatttaac tgtacctgtt tgcatatttc
    29401 acaaacctcc aaaaattttc ttaatatgtt tcttttacta acgaaaaaga tgttaacaac
    29461 aagctaatca ttttttcaat tacaaaattc acatattagc aaagatactc actccacatc
    29521 aatatccttg ataataagca aattagctac tatcaacact tatatattaa cgccaacgag
    29581 caaataaatc aagt
//
LOCUS       DASDXX010000011        29486 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.011, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000011 DASDXX010000000
VERSION     DASDXX010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29486
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.011"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            382..854
                     /locus_tag="U0280_000403"
                     /pseudo
     CDS             382..854
                     /locus_tag="U0280_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305065.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            847..1014
                     /locus_tag="U0280_000404"
     CDS             847..1014
                     /locus_tag="U0280_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEM2270364.1"
                     /translation="MINDEKKFKKNQSKIRDVSSNFNAQTIYIGKRGENIDAMLRIYD
                     KKAEQLGSSKR"
     gene            1011..1517
                     /locus_tag="U0280_000405"
     CDS             1011..1517
                     /locus_tag="U0280_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEM2270365.1"
                     /translation="MTHLRHEAEKLDDWVRYEAEYKGRYAHQLTDAIENCKSDEELKN
                     IIVSSILDRYGFYYTKESKKGKINRPTIETKKMLDLLNNNDFKFDSPSPRNNMLNQTI
                     NYIQKNSGLFPLLWKVDGIWGDGTYKELLEWLGDQYYNSFEPNDDHISWLNKYKALYQ
                     LEGKPWEG"
     gene            1525..1722
                     /locus_tag="U0280_000406"
     CDS             1525..1722
                     /locus_tag="U0280_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270366.1"
                     /translation="MNKPQVRSNINHIIKMADSVLKDENTINKRTSDSDYQKHIYTPE
                     AILANIKDSAESALKALNEYE"
     gene            2042..3082
                     /locus_tag="U0280_000407"
     CDS             2042..3082
                     /locus_tag="U0280_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002406008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2270367.1"
                     /translation="MASIVKRGKSYRAQVSLYKHGQHKKISQTFSTKKEENLWALEME
                     LAKGEGKELAHRTTTFADFFENWIYLVKVNDVKETTFQNYVRTLGIIRNLFQDIQLKD
                     LNDIVVQKKVDEYAKTHSRKTTHEVLLKIKTSLRDAYARGYIANDFARLVKTRGEKPP
                     KRNKALSITDFRKLRNYVLQHPEDEFNLLVLLALETGMQRGELLAIRPESLYEYGIKV
                     RHSISPTSDDTSLKTLNAKRDVSINKEVYELIRKIPVKEDGYIFSFGGFKQSEQLAEL
                     LKKLDIKKTTFHGLRDTHASFLFAQDIDIAYVSKRLGHINIQTTQNYYLELMPEKKHQ
                     QDADALNLLSAL"
     gene            complement(3151..3543)
                     /gene="rpsI"
                     /locus_tag="U0280_000408"
     CDS             complement(3151..3543)
                     /gene="rpsI"
                     /locus_tag="U0280_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002009728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEM2270368.1"
                     /translation="MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL
                     REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAG
                     LLTRDPRMKERKKYGLKGARRAPQFSKR"
     gene            complement(3565..4002)
                     /gene="rplM"
                     /locus_tag="U0280_000409"
     CDS             complement(3565..4002)
                     /gene="rplM"
                     /locus_tag="U0280_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEM2270369.1"
                     /translation="MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQ
                     FTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLL
                     ELSIKGMLPKNSLGRQLFKKLHVYGGAEHEHAAQQPEVYELRG"
     gene            complement(4197..4943)
                     /gene="truA"
                     /locus_tag="U0280_000410"
     CDS             complement(4197..4943)
                     /gene="truA"
                     /locus_tag="U0280_000410"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEM2270370.1"
                     /translation="MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTV
                     RITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHA
                     RFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA
                     RTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDI
                     SEALLARDRQKLISKTAPPQGLYLWRVDYE"
     gene            complement(4949..5746)
                     /locus_tag="U0280_000411"
     CDS             complement(4949..5746)
                     /locus_tag="U0280_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM2270371.1"
                     /translation="MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLT
                     YALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQI
                     TTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALM
                     LSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAED
                     LAIAMEARGYRGGKGRTRFRLLRWRFADTLLLISLVVLSGLLFWLRS"
     gene            complement(5749..6615)
                     /locus_tag="U0280_000412"
     CDS             complement(5749..6615)
                     /locus_tag="U0280_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2270372.1"
                     /translation="MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGS
                     GKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEET
                     VEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVL
                     AMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVL
                     MKAGTVLQIGTPREVFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELT
                     TEMAPYLAKGGA"
     gene            complement(6591..7430)
                     /locus_tag="U0280_000413"
     CDS             complement(6591..7430)
                     /locus_tag="U0280_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2270373.1"
                     /translation="MAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGS
                     GKSTIAKLLNGLLFPEDGLIKIGHFVLSEKNIWDIRRQVGMVFQNPDNQFVGATVQDD
                     VAFGLENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPD
                     VIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNNGEV
                     HSEGTPQEIFEQADAMREIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLN
                     SNN"
     gene            7561..8223
                     /locus_tag="U0280_000414"
     CDS             7561..8223
                     /locus_tag="U0280_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HEM2270374.1"
                     /translation="MLADFILRLVVAGLLGAIIGLDREIRAKEAGFRTHFLVSLGSAL
                     IMIVSQYGFSEIATMQNVSFDPSRVAAQVVSGIGFIGAGTIIIQKKFVRGLTTAAGLW
                     ATAGIGLAIGAGMYWVGIAATLLTLIGLEFLSIVFKSFAFHTTAIIYSTDKQENLVKV
                     TDKIQQNKQQIVSYSSEKELIGESLFIRVNIVVKTKNKNDEYELFHFIQTLPNVTVEK
                     ME"
     gene            8344..9234
                     /locus_tag="U0280_000415"
     CDS             8344..9234
                     /locus_tag="U0280_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HEM2270375.1"
                     /translation="MKNFVTSERAVFKMDKSAEPAITVKDGSVVKIKTKDYFNGQIQN
                     KQLQYGDLDWKQFSPTTGPIYIEEARSGDLLAVTIEKIELLGTEVFLLNGPNVGITDD
                     LLTSNYTRCYKVRENRIMYSDEIHIPITKTIGLLRTEGLLTSKSPANNDGLLDSSEIT
                     EGATIFLPVEKQGASLYIGNVRATAGFGKTTTTSAEAPAEITLRLQILKNRTAPTPTI
                     IHDNHLICLASDLTIEKAAKKAMQNMITLLTESDKMTTEDAMFLLSLQAEFQVCNMGK
                     ANITTSIKLPLDYFPEMPFL"
     gene            complement(9266..10360)
                     /locus_tag="U0280_000416"
     CDS             complement(9266..10360)
                     /locus_tag="U0280_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEM2270376.1"
                     /translation="MRSLTNAEIAHNRLLNSGLLQSKFSSAEDATRALFGIQSQYQQF
                     GEISLFNRVPNLTKENLQMAYDDKGIIKIWGQRMTVHMYTPDDWFYVHDVYANKNNWL
                     RKHADSLGRDLDEILVQMEELLLREDKVSKESFAALLGNEAKELMTWGGVFIQGSLDG
                     KLFCVPESPKTKFYSHRNQIDSEREDAWITNKRSKTGLETMIDRYFSAFGPATIQDFK
                     HWSGLRNSDYIETLEKLLENYICYIGEDGKNYYSKAKTQENVEMGSPLLLGKFDPLFV
                     SYAKKNWLASEKETSLIWRTAGQIEAVLIINAQFFGTWRYKISGDKIVFQFYLSKKLT
                     KKGQKLVEKEAIKLAEFLLKNYQGSIFEQI"
     gene            complement(10575..10982)
                     /gene="rplQ"
                     /locus_tag="U0280_000417"
     CDS             complement(10575..10982)
                     /gene="rplQ"
                     /locus_tag="U0280_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEM2270377.1"
                     /translation="MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVV
                     EKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDV
                     APRYAERQGGYTRILKKGPRRGDGAPMVIIELV"
     gene            complement(10999..11943)
                     /locus_tag="U0280_000418"
     CDS             complement(10999..11943)
                     /locus_tag="U0280_000418"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003178382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEM2270378.1"
                     /translation="MIEIEKPKIETIEISDDAKYGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVTSIQIDGALHEFSVIEGVVEDVTTMILNIKKLALKIYSDEEKTLEIDMQ
                     GPGVVTAADINYDSDVEILNPDLHIATLSDNAKFHVRLNATRGRGYTPADQNKRENMP
                     IGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLTFDVLTDGSISPEEAVSLGAKILS
                     EHLSIFVNLTDEAQKAEIMIEKEESHKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE
                     LADKSEDDMMKVRNLGRKSLEEVKVKLADLGLSLRNEN"
     gene            complement(12053..12442)
                     /gene="rpsK"
                     /locus_tag="U0280_000419"
     CDS             complement(12053..12442)
                     /gene="rpsK"
                     /locus_tag="U0280_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEM2270379.1"
                     /translation="MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAW
                     SSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPGSGREAAIRALQA
                     AGLEVTAIKDVTPVPHNGCRPPKRRRV"
     gene            complement(12465..12830)
                     /gene="rpsM"
                     /locus_tag="U0280_000420"
     CDS             complement(12465..12830)
                     /gene="rpsM"
                     /locus_tag="U0280_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEM2270380.1"
                     /translation="MARIAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTR
                     TRDLTEEELGKIREILDRIKVEGDLRREVNLNIKRLIEIGSYRGMRHRRGLPVRGQNT
                     KNNARTRKGPSKTVAGKKK"
     gene            complement(12849..12962)
                     /gene="rpmJ"
                     /locus_tag="U0280_000421"
     CDS             complement(12849..12962)
                     /gene="rpmJ"
                     /locus_tag="U0280_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEM2270381.1"
                     /translation="MKVRPSVKPMCEKCKVIRRKGKVMVICENPKHKQKQG"
     gene            complement(13066..13284)
                     /gene="infA"
                     /locus_tag="U0280_000422"
     CDS             complement(13066..13284)
                     /gene="infA"
                     /locus_tag="U0280_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEM2270382.1"
                     /translation="MAKEDVIEVEGVVQETLPNAMFNVELENGHKVLATVSGKIRMHY
                     IRILPGDKVTVELSPYDLTRGRITYRFK"
     gene            complement(13671..14318)
                     /locus_tag="U0280_000423"
     CDS             complement(13671..14318)
                     /locus_tag="U0280_000423"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEM2270383.1"
                     /translation="MKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTE
                     LGKKAKSFMDNGDLVPDEVTNGIVRERLAEDDAKNGFLLDGFPRTVEQAEELENILND
                     LGTELDAVINIEVDKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQR
                     DDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQDIKDVFVDVEKILASF"
     gene            complement(14378..15673)
                     /gene="secY"
                     /locus_tag="U0280_000424"
     CDS             complement(14378..15673)
                     /gene="secY"
                     /locus_tag="U0280_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEM2270384.1"
                     /translation="MFQTLVNFFKVADIRKKILFTLAMLVIFRIGTFVPVPGVNAAAL
                     QSSMDGGILGFLNTFNGGALKNFSIFAMGVMPYITSSIIVQLLQMDVVPKLTEWSKQG
                     EMGRKKLNQLTRYMTIGLGLVEAFGMAYGFNRMSSAGLVIEPSIGRYAIIAIVLTTGT
                     MFLMWLGEQITVKGVGNGVSIIIFAGIVARIPDGVRQLYVSQIENAGDQLFLHVLTLV
                     GVGIAILAIVVAVIFFQQALRKIPIQYSKRVAGAKQSGAQATHLPLKLNSAGVIPVIF
                     ASAFIITPQTILTFFDQSNDVVKVLKDVFDYTKPIGMILYVALIVAFTYFYAFIQVNP
                     EKVADNLKKQGGYIPSKRPGRETQAYLTSVLYRLTFVGAIFLSAVAILPTIGTTVFSL
                     PQSLAVGGTSLLIVIGVALDTTKQLEGQLVKRNYRGFIK"
     gene            complement(15673..16113)
                     /gene="rplO"
                     /locus_tag="U0280_000425"
     CDS             complement(15673..16113)
                     /gene="rplO"
                     /locus_tag="U0280_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEM2270385.1"
                     /translation="MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGG
                     GVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLNRFEDGTEVTPELLVETGII
                     RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI"
     gene            complement(16169..16348)
                     /gene="rpmD"
                     /locus_tag="U0280_000426"
     CDS             complement(16169..16348)
                     /gene="rpmD"
                     /locus_tag="U0280_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEM2270386.1"
                     /translation="MAKLEITLKRSLIGRPQPQRKTVQALGLGKTNSVVVKEDNPAIR
                     GMITKVSHLVDVKEV"
     gene            complement(16365..16868)
                     /gene="rpsE"
                     /locus_tag="U0280_000427"
     CDS             complement(16365..16868)
                     /gene="rpsE"
                     /locus_tag="U0280_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEM2270387.1"
                     /translation="MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKN
                     GHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASA
                     GSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGK
                     TVEELLG"
     gene            complement(16890..17249)
                     /gene="rplR"
                     /locus_tag="U0280_000428"
     CDS             complement(16890..17249)
                     /gene="rplR"
                     /locus_tag="U0280_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEM2270388.1"
                     /translation="MITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQI
                     IDDVNGVTLASASNLDKDFGSAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYH
                     GRVKALAEAARENGLEF"
     gene            complement(17289..17825)
                     /gene="rplF"
                     /locus_tag="U0280_000429"
     CDS             complement(17289..17825)
                     /gene="rplF"
                     /locus_tag="U0280_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEM2270389.1"
                     /translation="MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIN
                     IEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDK
                     LVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGK
                     GIRYEGEHVRRKEGKTGK"
     gene            complement(17856..18254)
                     /gene="rpsH"
                     /locus_tag="U0280_000430"
     CDS             complement(17856..18254)
                     /gene="rpsH"
                     /locus_tag="U0280_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEM2270390.1"
                     /translation="MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREG
                     FIRDVEYIEDDNAGTIRVFLKYGATGERVITGLKRISKPGLRVYAKSTEVPKVLNGLG
                     IAIVSTSQGVLTDKEARAKQVGGEVLAYVW"
     gene            complement(18285..18470)
                     /locus_tag="U0280_000431"
     CDS             complement(18285..18470)
                     /locus_tag="U0280_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEM2270391.1"
                     /translation="MAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICF
                     RELAYKGQIPGVKKASW"
     gene            complement(18502..19041)
                     /gene="rplE"
                     /locus_tag="U0280_000432"
     CDS             complement(18502..19041)
                     /gene="rplE"
                     /locus_tag="U0280_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEM2270392.1"
                     /translation="MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDAT
                     ANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDK
                     LVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTA
                     KSDEESHELLTQLGMPFQK"
     gene            complement(19068..19379)
                     /gene="rplX"
                     /locus_tag="U0280_000433"
     CDS             complement(19068..19379)
                     /gene="rplX"
                     /locus_tag="U0280_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEM2270393.1"
                     /translation="MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKH
                     TKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGDKKVRVAKKSGEVID
                     K"
     gene            complement(19417..19785)
                     /gene="rplN"
                     /locus_tag="U0280_000434"
     CDS             complement(19417..19785)
                     /gene="rplN"
                     /locus_tag="U0280_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEM2270394.1"
                     /translation="MIQQESRMKVADNSGAREVLTIKVLGGSGRKTANIGDVVVCTVK
                     QATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFDENACVIIRDDKSPRGTRIFGPV
                     ARELRENNFMKIVSLAPEVL"
     gene            complement(19865..20128)
                     /gene="rpsQ"
                     /locus_tag="U0280_000435"
     CDS             complement(19865..20128)
                     /gene="rpsQ"
                     /locus_tag="U0280_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011064531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEM2270395.1"
                     /translation="MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSK
                     KFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII"
     gene            complement(20156..20347)
                     /gene="rpmC"
                     /locus_tag="U0280_000436"
     CDS             complement(20156..20347)
                     /gene="rpmC"
                     /locus_tag="U0280_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEM2270396.1"
                     /translation="MKANDIRDLSTTEIQDQEKALKEELFNLRFQLATGQLENTARIR
                     EVRKAIARMKTIVRERELA"
     gene            complement(20337..20771)
                     /gene="rplP"
                     /locus_tag="U0280_000437"
     CDS             complement(20337..20771)
                     /gene="rplP"
                     /locus_tag="U0280_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEM2270397.1"
                     /translation="MLVPKRVKYRREFRGNMRGRAKGGTEVAFGEYGLQAVEASWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKPIGVRMGKGKGAPEGWVSPVKRGKI
                     MFEIAGVPEDVAREALRLAAHKLPVKTKIVKREEIGGEANES"
     gene            complement(20774..21430)
                     /gene="rpsC"
                     /locus_tag="U0280_000438"
     CDS             complement(20774..21430)
                     /gene="rpsC"
                     /locus_tag="U0280_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEM2270398.1"
                     /translation="MGQKVHPIGMRIGVIRDWDSKWYAEKDYADFLHEDLRIRDYVAK
                     RLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKRVHINI
                     VEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKTQVSGRLGGAD
                     IARAEHYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPTKKNNVEGGK
                     "
     gene            complement(21434..21790)
                     /gene="rplV"
                     /locus_tag="U0280_000439"
     CDS             complement(21434..21790)
                     /gene="rplV"
                     /locus_tag="U0280_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEM2270399.1"
                     /translation="MASEVTSAKAVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYT
                     PRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAIN
                     KRTSHITVVVSEVKEG"
     gene            complement(21811..22089)
                     /gene="rpsS"
                     /locus_tag="U0280_000440"
     CDS             complement(21811..22089)
                     /gene="rpsS"
                     /locus_tag="U0280_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEM2270400.1"
                     /translation="MGRSLKKGPFVDDHLMKKVEAAAESEKKQVIKTWSRRSTIFPTF
                     VGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR"
     gene            complement(22177..23010)
                     /gene="rplB"
                     /locus_tag="U0280_000441"
     CDS             complement(22177..23010)
                     /gene="rplB"
                     /locus_tag="U0280_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEM2270401.1"
                     /translation="MAIKKYKPTTNGRRHMTSSDFAEITTSTPEKSLLRPLKKKAGRN
                     NQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADGEKR
                     YIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGT
                     SAQVLGKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRP
                     TVRGSVMNPNDHPHGGGEGKAPIGRKSPMSPWGKPTLGYKTRKKNNNSDKFIVRRRKK
                     K"
     gene            complement(23051..23335)
                     /gene="rplW"
                     /locus_tag="U0280_000442"
     CDS             complement(23051..23335)
                     /gene="rplW"
                     /locus_tag="U0280_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEM2270402.1"
                     /translation="MDARDIIKRPVVTEESTSILDDKKYTFEVDTRATKTQVKYAVEE
                     IFDVKVAKVNVMNYKGKLKRMGRYAGYTNKRRKAIVTVTADSKEIQFFEV"
     gene            complement(23335..23958)
                     /gene="rplD"
                     /locus_tag="U0280_000443"
     CDS             complement(23335..23958)
                     /gene="rplD"
                     /locus_tag="U0280_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEM2270403.1"
                     /translation="MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASL
                     RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     KKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGES
                     ENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA"
     gene            complement(23984..24613)
                     /gene="rplC"
                     /locus_tag="U0280_000444"
     CDS             complement(23984..24613)
                     /gene="rplC"
                     /locus_tag="U0280_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEM2270404.1"
                     /translation="MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETD
                     GYEAVQIGFEDKRAILSNKPEQGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVF
                     AEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLL
                     PGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK"
     gene            complement(24648..24956)
                     /gene="rpsJ"
                     /locus_tag="U0280_000445"
     CDS             complement(24648..24956)
                     /gene="rpsJ"
                     /locus_tag="U0280_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEM2270405.1"
                     /translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT
                     EKSIYTVLRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDSLMRLDLPSGVDIEIKL
                     "
     gene            complement(25318..26118)
                     /locus_tag="U0280_000446"
     CDS             complement(25318..26118)
                     /locus_tag="U0280_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM2270406.1"
                     /translation="MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWT
                     YALMVLFTLMVIQMTGIKLKVFIKGVKPLIWLILFTVVMQILFASGGTIYFDWGPFTI
                     SSFGLLNGVFVFLRFVLIIMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALM
                     ISVALRFIPTLMGETDKIMKAQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEE
                     LADAMEARGYQGGEGRTRFRILHWHFGDLIAACVMILLTAGLVILRTS"
     gene            complement(26139..27098)
                     /gene="menA"
                     /locus_tag="U0280_000447"
     CDS             complement(26139..27098)
                     /gene="menA"
                     /locus_tag="U0280_000447"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM2270407.1"
                     /translation="MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPVNTLIF
                     FGSMLIFDLTTTAINNYMDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFI
                     ATGLGVWLVFRTDLLVLLIGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFL
                     AVYVNAYDAGIANLLWQGETVTIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDE
                     DIRNHRYTLPYYIGRKMGVLLFNALYYASFLAVVVSVAINFLHPIMLLSLITIYPVYR
                     NLVKFNKEQVKSKTFVIGIRNFVLINATLTILMAVSVVLQQLA"
     gene            complement(27180..28262)
                     /locus_tag="U0280_000448"
     CDS             complement(27180..28262)
                     /locus_tag="U0280_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM2270408.1"
                     /translation="MKKWKIIISVIILALVVSACGNSSKETKSEPSDSKKLMDQPYSK
                     TDFLMGTVVTLKIYDKGKEDVLDKGFDRIKDLAAKITTSDSEKTSEVDKINEQAGKKP
                     VKVSKDVYYLIQEGLKYSENSGGSFDITIGPLTSLWHIGFSDARKPSQAEIDAVLPLI
                     NYKDVKMNDKDQTVYLEKEGMELDLGAIAKGFITDETLKVFKENKVTTSIIDLGGNIY
                     VQGNNPNGNKWNVGIQDPFSPRGSVIGKLPESNMSIVTSGIYERYLEVDGKTYHHILD
                     PKTGYPFDNDIAGVSIVSKKSIDGDGLSTATFSKGVKGGMDYIEQFEGVDAIFISKEK
                     KVYETSGLKGQFELTDKDFQMDTLKK"
     gene            complement(28426..29325)
                     /locus_tag="U0280_000449"
     CDS             complement(28426..29325)
                     /locus_tag="U0280_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEM2270409.1"
                     /translation="MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETK
                     KTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDA
                     DYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAA
                     QKADTTTISINNLAKMEDGTYKLEEQNYAHGYRVVFSMDVKDGKITKSDYNYVDKDGK
                     LKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAA
                     QLQNAAQNGNTDTIKVYNLVEAE"
BASE COUNT         8608 a         6200 c         5245 g         9433 t
ORIGIN      
        1 aaactggatc aatggcaaga acacagctta cacaaccgaa aatattatag atttgattga
       61 tagttacaat aacggcgaaa aagaccctgt ttctctatgg aagcgcacgc agctccaata
      121 gtaaagcttc tagttctaag ttctgaagct actaactgcc agagcgtagc gtccctgtcg
      181 gcttttgccg acagggctgg cataagggca tagcccgtac agctccaagt ttcagaactc
      241 cgctgtttcc taataagcgg agttccaaaa cagtgaaaaa agctcattta ttaagccaga
      301 atagttggtt taacagcatt tatctctata ttaaacgcta taaaacatta cgcaatgttt
      361 ttagaaagga tgacaaaagt tatgactgtg acagccgata ttgatcaatt cacattaata
      421 cttcagccaa gatctctggc atttgacttt gatgattggg aaaagtggaa agcagaaagt
      481 ctggattaga gttattattc gggctggtag aagaagtaga tggtggaatt ctaaaaaatt
      541 atacaaaagg ttatacgttt ttagatgctc ccttctattt tcgcatcgcc tatcatccgt
      601 tttatgtaaa catgggtgtt tcaatatact tttcggctta tgcgtggagt gaataccgca
      661 aaagatatga agaatatttt aacaaaccga ttcatctaca cacatttttt cagttaatcc
      721 attcaaaaga ttattcatat agacttagtc gtatcgatat ggtcattgat tttaaaaatg
      781 aaggggtaga tatcgcaaag atatatcgct ctttagaggc tggaagaact gaggtgagat
      841 acaaccatga ttaatgatga gaagaaattt aaaaagaatc aatccaagat tagggatgtt
      901 agtagcaatt ttaatgcaca aacgatctat atcggtaaac gtggcgaaaa tatcgatgct
      961 atgcttagaa tttatgacaa aaaagccgag cagttaggaa gtagtaaacg atgacgcact
     1021 taagacatga agcagaaaaa ctagatgact gggtacgtta cgaagccgaa tacaaagggc
     1081 gctatgcaca ccaactaact gacgcaatcg agaattgtaa gtcagatgaa gaattgaaaa
     1141 acattattgt tagttctatt ttagatcggt acggatttta ctatacaaaa gaaagtaaaa
     1201 aagggaaaat aaaccgtccg actatagaaa ctaaaaaaat gctagatctg ttaaataata
     1261 atgattttaa attcgattct ccctcaccaa gaaacaacat gttaaatcaa acaataaatt
     1321 atatccaaaa aaacagtggt ttatttcctt tgctttggaa agtagatgga atctggggag
     1381 atggaactta taaagagtta ctggagtggt tgggtgacca gtactacaat agttttgaac
     1441 ccaatgatga ccatatatct tggttaaata agtacaaggc actttaccaa ttagagggta
     1501 agccttggga aggatgatat gacaatgaat aagccacaag taagatcaaa cataaaccac
     1561 attattaaaa tggctgactc tgttctaaag gatgaaaata caattaacaa aaggactagt
     1621 gattcagatt atcaaaaaca tatctataca cccgaagcta tcttagcaaa tattaaagat
     1681 agtgctgaaa gtgcattgaa agcattaaac gaatatgaat aaaaataatg aaatggagat
     1741 ggtgctttat gagcatcgat aaaaacacaa atgactatcc ttacctttta actcgtgaac
     1801 aagcgtcaga tttttttagg tatagaccct aagtcttttg ataaatatat ccgacagcat
     1861 gaagagctgg aacgtttcat gattggtagg cacgaacgat acacaatgaa atctctagta
     1921 cactttatcg aaaaacattc cgtttaaaat atcaacagtt gataagatgc tggtttagaa
     1981 atacaatata gttgtattca actagcatct atcaacttta tttatgaaag ggattgatag
     2041 tatggctagt atagttaaaa gaggaaaatc atacagggca caagtttcat tatataagca
     2101 cggtcaacat aaaaagattt ctcagacctt ttcgacaaag aaagaggaaa atctttgggc
     2161 gttagaaatg gaattagcga aaggagaagg taaagaactt gctcacagaa cgacaacatt
     2221 tgcggacttc ttcgagaatt ggatttatct tgtaaaagta aatgatgtta aagaaacaac
     2281 atttcaaaat tacgttcgta ccttaggcat tattcgaaat ttatttcaag acatccaatt
     2341 aaaagattta aatgatattg ttgttcaaaa gaaggttgat gagtatgcca agacacattc
     2401 tcgaaaaaca acacatgagg ttcttcttaa aataaaaaca tctttacgtg atgcatatgc
     2461 tcgtggatat attgcaaatg attttgcacg attagtgaaa acccgagggg aaaagccacc
     2521 taaacgtaat aaagcattat ctatcaccga ttttagaaag cttcgtaact acgttttaca
     2581 gcatccagaa gacgaattta acttacttgt attacttgca ttagaaacag gtatgcaacg
     2641 tggggaacta ctagcaatac gcccagagag tctttatgaa tacggaataa aagttaggca
     2701 ttcaatcagt cctacttctg atgacacttc gttaaagaca ctaaatgcaa aacgtgatgt
     2761 ttctattaac aaagaagtat atgaactcat tcgtaaaatt cctgttaaag aggatggtta
     2821 tattttcagc tttggcggtt ttaaacagtc ggaacaatta gcggagttat tgaagaaatt
     2881 agatattaag aagacaacgt ttcacggttt aagagacact catgcatcgt ttttatttgc
     2941 tcaagatata gatattgctt atgtatcaaa gcgattaggt cacattaata ttcaaaccac
     3001 acagaattat tatctggaat taatgccaga aaaaaagcac cagcaagatg ccgatgcttt
     3061 aaatctgtta agtgctttat aaggttcaag ttgatttgaa ccaacttgaa ccaaaaaagc
     3121 tctgtaaaca ttgatatatc aatgtttcta ttaacgtttt gagaactgag gtgcacgacg
     3181 cgcgccttta agtccgtatt ttttacgttc tttcatacgt gggtcacgag taagtaggcc
     3241 agcagattta agtgctgggc ggtactcagg agccacttgt aatagtgcac gagctacacc
     3301 atgacggata gcaccggctt gaccagtgta accaccaccg tgaacgttta ctagtacatc
     3361 atagttacct aaagtttctg tagctactaa aggttgtttg ataacttcac gaagagctgc
     3421 gaatgggatg taatcttccc agtctctatt gttaataacg attttgccgt cgcctggtac
     3481 taaacgtacg cgagctacag agcttttacg acgaccagtt ccgtaatatt gtacttgagc
     3541 cacttagtat tcctccttta ttaattaacc gcgtaattcg tatacttctg gttgttgagc
     3601 tgcgtgttcg tgctcagctc caccatatac gtgtaatttt ttgaataatt gacgtccaag
     3661 agaatttttt ggaagcatac ctttgataga tagttctaat aatttctcag gattgtttgt
     3721 acgcatttcg cctgcagtac gagatttcaa accgcctgga tattgagagt gacggtagta
     3781 aattttgtca gtagcttttt taccagtaag accaatctta ccagcgttga tgatgattac
     3841 aaagtctcca gtgtcgatat gtggagtaaa ttgtggtttg ttttttccgc gaagaattga
     3901 agcaacttca ctggataaac gtcctaaaga aacaccagta gcgtcgataa cgtaccattt
     3961 acgttctact tcgccgggtt tcgccatata agttgtacgc atgaattacc ctcctaaata
     4021 aattgaaaca aattagctcc cgaaaactgt tcctaattcc cgaaatgcta ttctatattt
     4081 ttattgttta aacacaacaa ccttccgggg cttattgtgg ggcaaacaat accatagtcc
     4141 ataatacagt ttttggagca aaaagtcaat gcgttctgca aaaaaacatc caatttttat
     4201 tcatagtcca ctcgccataa atataaccct tgtggcggcg cagttttact aattaatttt
     4261 tgccggtcac gtgctaataa agcctcacta atatcatccg gagagattcg accttgccct
     4321 gcatcgagca aagttcccgt caaaattcgc accatattat acaaaaagcc attcccttga
     4381 aaagcaatca ctaacgtctc gtcgtcctct tcataaaaat caatactata aagtgttcgg
     4441 actttagaat cgcgctccgt tctcgccgaa cagaagctag taaaatcatg ctcgccaatc
     4501 aggcgtttac tcgccaactt catttttgaa atgtccagtt catatggata atgtagcgca
     4561 aaattccgac taaaaggatc aaaaattttc gtccgcttta ccacataacg atattctttt
     4621 ccaactgtgc caaatctagc gtggaaatcg tctggtactt cttccactgt taaaaagcta
     4681 atatcgaacg gagtcatgac ttgcaaagct ttttgaaatt tttcggcagt gatatcaagt
     4741 tccgaatcga aatgaataac ctgacctttc gcatgaacac cagtatctgt tcttcctgat
     4801 gctgtaatcc gcacagtctt gcctttatgc atttttgtca gtgctttttc aatttccgct
     4861 tggaccgtcc gtgtattcgg ctgcacctga tagccataaa acccgctacc atcataagaa
     4921 attatcgctt tatatctcgt catttatttc aactccgcaa ccaaaataat aatccactta
     4981 acactactaa cgaaatcagt agcaacgtat ctgcaaatcg ccagcgtagt aaacggaatc
     5041 tcgttctccc tttaccacca cgataaccgc gtgcttccat tgcaatcgct aaatcttccg
     5101 cacgtttaaa cgcactaata aaaagtggca caagcaacgg aataatcgct ttaatccgat
     5161 cactccattt tccactcgta aattcaacgc cacgagcttt ttgcgctttt aatattttct
     5221 ccgtttcatc catcaatgtt ggaataaatc gtaaagaaat actcagcatc aaagcaagtt
     5281 catgtactgg taaatgtact aaacgaaacg gcgctaaaat tttctccagt ccgtctgtta
     5341 gttcaatcgg gcttgtcgtt aatgttaaaa gtgttgtcat aaaaataatg agaacaaagc
     5401 gacaaaacat catcgctcca tttgtcagtc cgagtgtcgt tatttgtaaa agtcctaaat
     5461 cgactaaaac tgtcccgcct tttgtaaaaa agacttgaag taatagcgta attaaaataa
     5521 gccagaaaat cggttgtaac cctttaataa aaaataaaaa tggcactttc gaagttagga
     5581 ctaaatacaa aacatacgca aacataagcg cataggtcag ccaattgttc gctaaaaaga
     5641 caatcgcgat aaacgccata acagcagtga ttttcgcacg tgggtcaatt cgatgcaacc
     5701 aagagtttcc cggaatataa cgtccgagaa tcattttatc catcataatt atgccccgcc
     5761 cttcgctaaa taaggcgcca tttcggtcgt taattcatca atggttaaac aagtttttgt
     5821 taatttcaca tcaaatttgc gctcaaaaag tccttggaat ctcaccacat ccggtacaga
     5881 taacccaaga tcaaccagtt cgtctggctt cgcgaaaact tcacgtggcg taccgatttg
     5941 aagaaccgtc ccagctttca tcaagacaat cttttccgca taacgagcag catcttccat
     6001 actgtgtgtt acaagtactg tcgtaagccc tttttcttta tgaagattgt agaacatttc
     6061 catgatttcc tcgcggccat gaggatctag tcccgctgtt ggctcatcta gcacaagtac
     6121 ttctgggtcc atcgccaaaa cacctgcaat cgcaacccgg cgcatttgcc caccagaaag
     6181 ttcaaacggc gaacgtgaca aaatttcctc ggtcagtccc acttcataaa tcactttttt
     6241 agcgcgtagt tttgcatctt cctcggaaac tccaaagttc atcggtccaa aacaaatatc
     6301 cttttcgacc gtttcttcaa aaagttgtgc ttctggaaat tggaacacaa tcccgacttt
     6361 cttacgtaaa tcacgtagtt tcttttgctt tacgccagca acgatttctc gatcaccaac
     6421 tgtgatttta ccttctgttg gcattaaaag agcgtttaag tgttgtagca aagttgattt
     6481 ccctgagcca gtatgaccaa taattgcaga atagctacca gaatcaaaag aaacattcac
     6541 atcaagtaat gctcgctttt caaaagggct atttttttga taacaataac ctagttgttc
     6601 gagtttaatt tccataattg atctagtaat gctccttccg atagcacggt gcttccagtt
     6661 tcaaagccac ctgcaactaa tttttcttgt aattcaataa taaatggaac acctaagcca
     6721 atttcgcgca ttgcatctgc ttgctcgaaa atttcttgcg gtgtgccttc actgtggact
     6781 tctccgttat tcataacaat tactcgatcc gcaaaaagaa cttcatccaa atcatgtgta
     6841 atcgaaataa cggtaatgtc ttcttgttca cgcataatcc gaatagtttc cattacttcg
     6901 gcgcgccctc ttggatcaag catagaagtc gcttcgtcca aaataatgac atctggttgc
     6961 agcgccaaaa cgccagcaat tgctacccgt tgtttttgcc caccagaaag tctagctggt
     7021 tcatgtagtg cataactttg catcccaacc tcattcaaag ctgactcgac gcgttccacc
     7081 attgtatcgt gcggaacccc gtgattctca agtccaaacg cgacatcgtc ttgcactgta
     7141 gctccaacaa attggttatc tggattttga aaaaccattc ctacttgtcg tctaatgtcc
     7201 catatatttt tttcagacaa aacaaagtgt ccgattttga ttaaaccatc ttctggaaaa
     7261 agcaatccgt tgagtaattt cgcaatggta gatttacctg aaccattatg accaacaagt
     7321 gcaacccatt cccctttttg agcagaaata gatacatctt tcactgcata tttttccgta
     7381 tcctcatatt tataaaaaac gtgctctaat ctcacaaaac tttctgccac gcttaacacc
     7441 tcactttttg accattcatt gtttattata gtataaacat ccatccggcg caaaatttcc
     7501 tttttgattg ttttggttta atgccaaagg gaatatatta acgttaagga tgtgataact
     7561 atgttagcag attttatttt acggcttgtt gttgcgggtc tccttggagc aattattgga
     7621 cttgaccgag aaatcagagc gaaagaagct ggattccgga cacattttct tgtttcgctc
     7681 ggtagcgcat taattatgat tgtttctcaa tatggttttt ccgaaattgc caccatgcaa
     7741 aatgtatcgt ttgacccaag tcgtgtcgct gctcaagtgg taagcgggat tggctttatt
     7801 ggcgcgggta cgattattat tcaaaagaaa tttgttcgcg gtctaacaac agcagccgga
     7861 ctttgggcca cagctggcat tggccttgct attggtgcag gtatgtactg ggttggaatt
     7921 gccgctactt tacttacctt aatcggatta gaattcttga gtatcgtttt caaatcattt
     7981 gcctttcata caactgcaat tatctattca accgacaaac aagaaaatct agtgaaggtc
     8041 acggacaaga tccaacaaaa caaacaacaa atcgtttcgt actcaagtga aaaagaactt
     8101 atcggagaaa gtctttttat tcgcgtgaat attgttgtaa aaacaaagaa taagaacgat
     8161 gaatacgaac tatttcactt tatacaaact cttcccaatg taaccgttga aaaaatggaa
     8221 taaagaattg ctttctactg tttgcaactc ggttttgttc acagaatatc catttacttc
     8281 ctacttctca ttttgctata attcacccgt cactactaat agaatataga gagaagggaa
     8341 gagatgaaaa actttgtaac ttcagaacgc gcggttttta agatggataa atcggcggaa
     8401 cctgcaatta cagtgaaaga tggctctgta gtaaagataa aaacaaaaga ctacttcaat
     8461 ggccaaattc aaaacaaaca gcttcaatac ggggacctag attggaaaca attttcacca
     8521 actactggac caatctatat cgaagaagct agaagtggag atttattagc ggtaacgatt
     8581 gaaaaaattg aactcctagg gacggaggta tttttactaa acggaccaaa tgttggtata
     8641 acagatgatt tattaacaag caactatact cgttgctaca aagtcagaga gaatcgaatt
     8701 atgtattcag atgaaattca tattccgata actaaaacta tcggattgct acgaacagaa
     8761 ggcttactta cctccaaatc accagctaac aacgacggcc tactcgactc atccgagatt
     8821 acagaaggtg caacgatctt tttaccagtt gaaaaacagg gtgcatcgct ttacatcggc
     8881 aatgttcgag ctacagctgg cttcgggaaa actactacca cgagtgcaga ggcgccagca
     8941 gaaatcactt tacgacttca aatccttaaa aatcgaacag ctcccacacc cacaatcatt
     9001 catgacaacc atttaatttg cttagcatca gatctcacta ttgagaaagc ggcaaaaaaa
     9061 gcgatgcaaa atatgataac tttacttact gaatcagata aaatgacaac tgaagatgcg
     9121 atgttccttc tatcactgca ggctgagttt caagtatgca acatgggtaa agcaaatatc
     9181 actaccagta tcaaattacc tttggattat tttccagaaa tgccattttt ataagaaaag
     9241 aacccccgtt ctgacggggg ttcttttaaa tttgttcaaa aatgctgcct tggtagtttt
     9301 taaggaggaa ttcagctagt tttatcgctt ctttttctac taatttttgt ccttttttag
     9361 ttagtttttt actaagatag aattgaaaaa ctattttatc ccccgatatt ttatatctcc
     9421 acgttccaaa aaactgagca tttattatta agacagcttc aatttgccca gcggtgcgcc
     9481 agattagact cgtttctttt tcgctcgcaa gccaattctt tttcgcgtaa cttacgaaaa
     9541 gcggatcaaa cttccctaat agaagcggcg accccatctc cacattttcc tgcgtttttg
     9601 ctttgctata atagttcttg ccatcttcac cgatatagca tatatagttt tcaagtaact
     9661 tttctaacgt ttctatataa tcactatttc gcaaaccact ccaatgcttg aaatcttgta
     9721 tagtcgctgg cccaaatgca ctaaaataac gatcaatcat tgtttcaaga cctgtcttgc
     9781 tgcgcttgtt agttatccaa gcatcttctc tttctgaatc aatttggttt ctatgactat
     9841 aaaattttgt tttaggactt tctggcacac aaaacaactt gccatcgagt gacccttgaa
     9901 taaaaacccc gccccatgtc atcagctctt ttgcttcatt acctagtaaa gccgcaaagg
     9961 actctttaga cactttatct tcgcgcagga gtaattcttc catttgtact aaaatctcat
    10021 ccaaatcacg tcctagagag tctgcgtgct ttcttaacca attgtttttg ttcgcataaa
    10081 catcatgaac ataaaaccaa tcatccggcg tatacatatg gacagtcatt ctttgccccc
    10141 agattttgat tatcccttta tcgtcgtaag ccatttgcag gttttctttg gttaaattag
    10201 gtacacgatt aaataaacta atctctccaa attgttgata ctgcgactga ataccaaata
    10261 acgcacgagt tgcatcctct gcgctggaaa atttagattg tagtagtcca gaattaagta
    10321 atctattgtg agctatttcc gcgttagtta acgaacgcat tctccgtccc tcccactgtt
    10381 tatctttgga atttactata gatggtttcc agtataaagg caagaaaaaa agacctgcta
    10441 tacatagata acaggtcaaa caaaaaaagc ctgcctccta gcctacgatt aagtagacta
    10501 ggaaacacag agctagacaa ggaaacacga agtctccata tcatgacact ccacttgctt
    10561 taaacgtttt attattaaac taattcaata ataaccattg gtgcgccgtc accgcgacgt
    10621 ggaccttttt tcaagatacg agtgtaacca ccttgacgtt ccgcgtaacg tggagcaaca
    10681 tcatcaaata gtttttgtag agcgtataca ggacggtttt tcttcacagt tgaaccatct
    10741 ttacctttag catctacttg tactacttct acaacttcat gacggatgaa agcagctgct
    10801 tgacgacgag cgtgcaagtc tccttttttc ccagaagtga ttagtttttc aacaacttta
    10861 cgaatctctt tagcgcgagc ttctgttgtt tcaatacgtt caaatacgat taaatccgtt
    10921 gcaagatcac gtagtaacgc tttacgttgt gagcttgtac gacctaattt tctgtaaccc
    10981 atggaattgc ctcctttatc agttttcgtt tcttagagat aagccaaggt cagccagttt
    11041 tactttaact tcctcaagcg atttacggcc caagttacgg actttcatca tatcgtcttc
    11101 ggatttgtca gcaagttcct gtactgtatt gattccagcg cgtttcaaac aattatatga
    11161 acgaacagac aagtctaatt cttcaatagt catttcaagc actttctctt tatggctttc
    11221 ttctttttca atcataattt cagctttttg tgcttcatct gttaagttaa cgaagatact
    11281 taagtgctca gaaagaattt tagctccaag tgaaactgct tcttctgggc tgatacttcc
    11341 gtcagttaac acatcaaacg taagcttatc ataattagtt gattgtccaa cacgtgtatt
    11401 ttccacttga tagttcacac ggataaccgg tgaaaagatt gaatcgactg gaagtacacc
    11461 aattggcata ttttcgcgtt tattttgatc agcaggtgtg taaccacgac cacgagtcgc
    11521 atttaaacgc acatgaaatt tagcattatc acttaatgta gcaatgtgta agtcgggatt
    11581 taaaatctca acgtcgctgt cataattaat gtcagctgca gttactacac caggaccttg
    11641 catatcgatt tctaatgttt tttcttcatc agaatagatt tttagtgcaa gttttttaat
    11701 atttaaaatc atggttgtta catcttctac tacaccttca attacagaaa actcatgtaa
    11761 agctccatca atttggatag aggttactgc tgcacctgga agagaagata atagaatacg
    11821 acgtaaggag ttacccaaag ttgtaccata tccacgctca agtggctcta caacaaactt
    11881 tccatacttg gcatcatcgc tgatctcaat cgtctcgatt tttggctttt caatttcgat
    11941 cattcaaatt taccctcctt caaaacgtct agaatatcag tctttatgtc aaactctctg
    12001 ccttgatagt taagacagta aaaatctact attggcaaaa gaaaacgacc acttatacgc
    12061 gacgacgttt tggaggacga catccgttat gtggaactgg agttacatct ttaatagctg
    12121 ttacttcaag accagctgct tgtagtgcac ggatagccgc ttcacgacct gaaccaggac
    12181 ctttaacagt tacttctaat gtttttaaac catgttcttg tgctgatttt gctgcacttt
    12241 cagctgccat ttgcgctgcg aaaggagtag atttacgaga acctttaaat cctagggaac
    12301 ctgcacttga ccaagctaaa gcattaccat gtgtgtcagt aatcattacg atcgtattat
    12361 taaatgtaga acggatgtgt gcaataccag attcgatatt ctttttcaca cggcgtttac
    12421 gagtatttgt tttacgagcc attcactaac tacctccttt actattattt ctttttgcct
    12481 gctactgttt tggacgggcc tttacgagta cgggcattat tttttgtatt ttgtccgcga
    12541 actggaagtc cacgacggtg acgcatgcca cggtaagaac cgatttcgat tagacgttta
    12601 atgtttaagt ttacttcacg acgaaggtca ccttcaactt taatacggtc taagatttca
    12661 cggattttac ctagctcttc ttcagttaaa tcacgagtac gagtatcttc agaaacgcca
    12721 gcttcagcaa gaacttcttt agctgtttgt ttaccgatac cataaatgta agtcagggaa
    12781 ataacaatac gtttttcacg tggaacgtcc acacctgcaa tacgtgccat ttacttaagc
    12841 acctcctctt atccttgttt ttgtttatgt tttggatttt cacaaattac cattacttta
    12901 cctttacgac gaataacttt acatttttcg cacataggtt tcactgatgg tcttactttc
    12961 atatagatat acctccttgt ttattagaga aaatgtctct ataaaccgat aatttctaag
    13021 ctggataaac cagaccggta tataaattca atttcggagt gcaaattatt taaaacgata
    13081 agtaattctt ccgcgtgtca ggtcgtatgg agaaagctct actgtcactt tatctccagg
    13141 taaaatacga atgtaatgca tacggatttt accagaaaca gttgccagta ctttatgacc
    13201 attttcgagt tcaacgttga acatcgcgtt tggtagagtt tcttgtacta cgccttctac
    13261 ttcaataaca tcttcctttg ccatatgttt gctacctcct tcttgtattc ttggatttgt
    13321 tcctgatgca ggcctaatcc tttcagtgta actatttctc ttacatgaaa aaaacgtaaa
    13381 acatgcaaaa atggatgcac ttcattaaaa ggcaacacat ttcgccagct tttcagacaa
    13441 cctgtaaaag tgaaatccgt aaaaaccaga agaactgtca ctcgcaaaag tattgcggct
    13501 gaacagatca aggtagaaca tatacgtcat tcggatgatc ttcaaacggt tctctcgttc
    13561 atcatgattt gcttagatgc ctttaattcc actgccaatt atccattata ctacaaacta
    13621 aactaatttg cacgcattga ttttgacagt gattcagcac agctcactcc tcaaaaagaa
    13681 gcaagaattt tttccacatc tacaaaaacg tctttaatgt cttgctcgcc gtttatgtta
    13741 tgaagtttac ccttttcaga ataaaaatct agaagcggct tggtctgttt catatttaca
    13801 tttagtcgtt tttcaaccgt ttctttcttg tcgtcatcgc gttggtaaag ttctccgcca
    13861 tctaaatcac atttcccagg aactttcggt gggttgtaaa tttcatggta agtcttaccg
    13921 caagtccgac aaatccaacg acctgtaaga cgtttcatta aaacatcttt atcaacttca
    13981 atgttaatga cagcatcaag ttctgtccct aaatcattta gaatattttc tagctcttct
    14041 gcttgttcca cagtgcgcgg aaaaccatca agcaagaaac cattcttagc atcatcttcg
    14101 gccaaacgtt cacgaacgat accatttgtt acttcatcag gaacaaggtc gccattatcc
    14161 ataaaggatt tagctttctt tcctaattcc gtattatttt tcatagctgc tcggaacata
    14221 tctccagtgg aaatatgagg aatgttgtat ttctcaacaa tctgttccgc ttgtgtgcct
    14281 tttccggcgc cgggcagtcc cattaatact aatttcaact gtttcgcccc ttattacgcg
    14341 ctagctcctg ctaggaagac ctaacaagaa ctgcgtgtta tttgataaat ccccgatagt
    14401 tcctttttac aagttgtcct tcgagttgtt tcgtagtatc taatgctacc ccgataacaa
    14461 ttagtaggct tgtaccacca acggcaagtg actgcggtaa actaaacaca gtagtaccga
    14521 tagttggaag tatagcaacc gctgaaagga aaattgcacc aacaaatgtt agacggtaaa
    14581 gtaccgatgt aagataagct tgtgtttccc gaccaggacg tttactagga atatacccac
    14641 cttgcttttt caagttgtct gcaactttct cagggttcac ttgaatgaaa gcatagaaat
    14701 aagtgaaagc aacaattagt gcaacatata aaatcatacc aattggtttt gtgtaatcaa
    14761 acacatcttt caatactttt acaacatcgt tactttgatc aaagaaagta aggatagttt
    14821 gtggtgtaat aataaatgca cttgcaaaga taacagggat aactccggca gagttaagtt
    14881 ttaacggcaa gtgcgttgct tgcgcgcccg attgttttgc tcctgctaca cgtttagagt
    14941 attgaattgg aattttgcgt agtgcttgtt ggaagaagat tacagctaca acaatagcta
    15001 aaattgcaat ccctacacca actaatgtca gaacatgtag gaaaagttga tcaccagcgt
    15061 tttcaatttg cgaaacatat aattgacgaa ctccatcagg aatacgagca acgatacctg
    15121 caaagataat gatggaaaca ccattaccaa cgcctttaac agtgatttgt tcacctagcc
    15181 acattaagaa cattgtacca gtagtcaata caatagcgat aattgcatat ctaccaatgg
    15241 aaggttcaat tactaagcca gctgaagaca tgcggttaaa tccatatgcc ataccgaaag
    15301 cttccactaa accaagtcca attgtcatgt atctagtaag ttgattgagt tttttacgac
    15361 ccatttcccc ttgcttcgac cactcagtca atttaggaac aacgtccatt tgaagtaact
    15421 gaacaataat ggaagatgta atgtaaggca ttacacccat ggcaaaaatt gagaagtttt
    15481 ttaaagcccc accattaaat gtatttaaga accccaaaat accgccatcc atactagatt
    15541 gtaaagctgc tgcgttaact cccggtactg gcacgaatgt accaatacgg aaaataacta
    15601 gcattgctaa tgtaaatagt atttttttac ggatgtctgc tactttgaag aagttaacta
    15661 acgtttgaaa cattagatca cctcagtttt tccgccagcc gcttcaattg cttctttcgc
    15721 agctgcagag aatttgttcg ctttcacagt aagttttttc tcgatatttc cattagataa
    15781 aatcttgatt ccggattttt cattacgaat aattccagtt tcaactaaaa gttctggtgt
    15841 tacttctgta ccatcttcaa agcggtttaa aacatctaag ttcacgatag caaattcttt
    15901 acggttgata tttgtgaatc cacgttttgg aatacgacgg aaaagtggaa gttgtccacc
    15961 ttcaaagcct aaacgtacgc caccaccaga acgagctttt tgtcctttat gaccgcgtcc
    16021 tgaagttttg ccgttaccag agcctgttcc acgaccaaca cgattacgtt ctttacgaga
    16081 accttctgaa ggcttaagtt catgtagttt catgtcaagc acctcctcct atttaacaaa
    16141 ttctatccat tgcataataa ttttaagctt aaacttcttt gacgtccact aaatgactta
    16201 ctttagtgat catcccacga attgcaggat tatcttcttt aaccactaca gaatttgttt
    16261 taccaagacc taatgcttga acagttttgc gttgtggttg agggcgtccg attaagctac
    16321 gttttagagt aatttctaac ttcgccataa tgataattcc ctccttatcc taacaattct
    16381 tctactgttt tgccacgaag tttcgcaaca tcttcagcgt ttttcagttg tttaattccg
    16441 tcgattgtag cacgtaccat gttaattggt gtattagatc caagcgattt ggaagataca
    16501 tcagcaacac cggcaagttc taggaccgca cgaacgggac caccagcagt tacaccagaa
    16561 ccggcactag ctggtttaag aagaatttcc ccgccaccaa aatgtccgac tacagtgtgt
    16621 ggaatagttg tgtctacagt tggtacaagc accatgttct ttttagcatc ctcaacagct
    16681 ttacggatag catctggaac ttcttgcgct ttaccagtac cgaaaccaac atgaccattt
    16741 ttgtctccaa caacaacaag tgctgtgaaa cggaaacgac gtccaccttt aactacttta
    16801 gcaacacggt tgattgtaac aacgcgttct tctaaatcta atttgtttcc atcaatttgc
    16861 tcaggcatgt aatatgtccc tccttcttat taaaattcta gtccattttc gcgagctgct
    16921 tcagcaagag ctttcacgcg gccatgatat aagtatcctc cacggtcaaa agtgacagaa
    16981 gtaatacctt tttcggaagc acgtttagca actagttcgc caactttgct tgctgcatca
    17041 actttggatt cagcagaacc gaaatcttta tctaaattag acgcacttgc aagtgtcaca
    17101 ccatttacat catcaataat ttgagcataa atgtttttgt ttgaacggaa tacgtttaaa
    17161 cgtggacgac tttcagttcc agaaatctta gaacgaacac gagcatgtct ttttttacgt
    17221 actttatttt tgtcgatttt ggtaatcaca cgactcacct cttctctcat ttgcctaatt
    17281 aagcggcatt atttaccagt tttaccttct ttacggcgta catgttcgcc ttcgtaacga
    17341 atacctttac ctttatatgg ctctggtgga cgtacggcac gaatgtttgc agctaactcg
    17401 ccaacgtgtt ctttgttgta tcctttaaca atcacttgtg tgtttgcagg aacttcaata
    17461 tctacgcctt taggagcaac aaactctact ggatgagagt accctacgtt aagaacaagc
    17521 ttgtcgcctt gtttttgcgc acggtaacca acaccgataa gttctaattt cttttcataa
    17581 ccctcggaaa ctccgacaac catgttatta agaatagcac gagttgtacc atgaagtgca
    17641 cggtggtttt tattatcagt cgggcgagaa acgttaattt cgttgccttc aatattaata
    17701 gtaatttctg ggttgaactc ttttacaagt tcacctttag gacctttaac tgttgctgtt
    17761 gatccattaa gtgtaactgt tacacctgca ggaatcacaa tagttttttt acctatacgg
    17821 gacatttatt gcacctcctt atggtttact ttttcttacc aaacgtatgc tagtacttct
    17881 ccgccgactt gtttagcacg ggcttctttg tcggttaaaa cgccttggga agtagacacg
    17941 attgcgatac ctagaccgtt aagtacttta ggcacctcag ttgattttgc atatacacgt
    18001 aaacctggct tactaatacg tttcaaacca gtgattacac gttcgccagt cgctccatat
    18061 tttaagaaaa cacggattgt tccagcattg tcatcttcaa tatattcaac gtcacggata
    18121 aaaccttcac gcttcaatat ttcagcaatt tcttttttga ttttggatgc aggcagttct
    18181 aatttatcat gtttaaccat gtttgcatta cgaatgcgag ttagaaaatc tgcaattgga
    18241 tctgtcatca ccatgtataa taccctcctt ccttaaactc tttcttacca gcttgctttt
    18301 ttcacgccgg gaatttgacc tttataggca agttcacgga aacaaatacg gcataattta
    18361 aatttgcgaa taacggaatg tggacgacca caacgttcac aacgagtata tgcttgaaca
    18421 gcgtattttg gtgtacgttt ttgcttcgcg atcatggatt tcttagccac gttttcgcct
    18481 ccctactaaa attagttttg attacttttg aaatggcatc cctagttgag ttagtaactc
    18541 atgagattct tcatcacttt tggcagttgt aacgattact acgtccatac cgcgtacttt
    18601 tgatacttga tcgtaatcaa tttcagggaa aataagttgc tctctaacac ccaacgtata
    18661 gttaccacga ccatcgaaag cttttttcga tacgccacgg aaatcacgaa cacgtggaag
    18721 tgaaacagta actaatttat ctaagaaatc atacatgcgt tcaccacgca aagttacttt
    18781 agcaccgatt ggcattcctt cacgaagacg gaaaccagcg atagaatttt ttgcttttgt
    18841 gattacaggt ttttgaccag tgataagagc taactcctca actgcactgt ctaaaacttt
    18901 cgcatttgct gtagcgtcac caacaccagt gttgattacg attttatcta tttttggaac
    18961 ctccattacg gagtcataat tgaatttgct cattaaagca ggaacaattt ccttaagata
    19021 ttgatcttta aggcgattca tgtaatattc cctccttcct acgactatta tttatctatt
    19081 acttcaccgg atttttttgc tacgcgtact tttttatcgc ctttaacttc gtatcctaca
    19141 cgagtaggtt cgcctgtttt agggtcaatt agcattacgt ttgaaacgtg gattggtgct
    19201 tcaacattca agattccgcc ttgcgggttg atgttggaag gttttgtatg ttttttaacc
    19261 atattgattc cttcgataag tacgcggtcc tttttcggaa atgctgcgag cactttgccg
    19321 gatttgcctt tatctttacc agtaataact tttactttat cacctttttt gacatgcatt
    19381 ggtatagcac ctccttgatt tcttggaact tattttttaa agaacttctg gagctaaaga
    19441 aacgatcttc ataaagttgt tttcacgaag ttcgcgagca acaggtccaa aaatacgtgt
    19501 tccacgagga cttttatcgt cacggataat gacacatgca ttttcatcaa acttgatgta
    19561 agaaccgtct tgacgacgtg ctccactctt agtacgaacg attactgctt taacaacttc
    19621 accttttttg acaacgccgc ctggtgttgc ttgtttaacg gtacacacga caacatcgcc
    19681 aatgttagca gttttgcgtc ctgatccacc tagtacttta atagttaaca cttcacgagc
    19741 accagagtta tcagccactt tcatacgact ttcttgttga atcattagga caccctcctt
    19801 ccagaataac gggtcggaaa aattgcactc ggcaactttt cacaatctat ttttaacttt
    19861 tgatttagat aattactgct tcttctacaa cttctagtaa acggaaatgt ttagttgcag
    19921 acaatggacg agtttcggaa atacgaacta catcgccagt ttttgcaatg ttattttcat
    19981 catgcgcttt gaatttttta gaatacttca cgcgtttacc gtacaaacca tgtttcttgt
    20041 acgtttcaac aaccacggta attgttttat ccattttgtc ggatacaaca cgaccagtat
    20101 aaactttacg ttggttacgg tcagccatgt attaaaacct ccttacgatt cttttttaag
    20161 caagttctct ttctcgaacg attgttttca tacgggcaat tgctttacga acctcacgaa
    20221 tacgtgcggt gttttctaat tgaccagtag ctaattgaaa gcgcaggttg aagagctctt
    20281 ctttcaaagc tttttcttga tcttggattt cggtagtgga taaatcacgg atatcattag
    20341 ctttcatttg cttcaccacc aatttcttca cgtttaacga tcttagtttt gaccggcagt
    20401 ttgtgtgctg ctagacgtaa tgcttcacgc gctacatctt caggaacacc tgcgatttca
    20461 aacataattt tgccacgttt gactgggctt acccaacctt ccggagcacc tttaccttta
    20521 cccatccgaa ccccgattgg tttagaagtg taagatttat gagggaaaat tttaatccaa
    20581 actttaccgc cacgtttcat gtaacgagtc attgcgatac gagctgcttc gatttgacgg
    20641 tttgtaatcc aagaagcttc aactgcttga agaccgtatt caccaaatgc aacttcagtt
    20701 ccgcctttcg cgcgtccacg catgtttccg cggaattcac gacggtattt tacacgttta
    20761 ggaactaaca ttattatttt cctccttcca cattgttttt cttcgtagga aggacttcac
    20821 cgcggtagat ccagacttta acgcctagtt taccataagt tgtgtcagct tcttcccatg
    20881 cgtagtcgat gtcggcacgc aatgtatgaa gaggtactgt tccttcgcta tagtgttcag
    20941 cacgagcgat atccgctccg ccaagacgac cagatacttg agttttgata ccttttgctc
    21001 cagcacgcat agtacgttgg atagcttgtt tttgcgcacg acggaaagat acacgacctt
    21061 ccaattgacg agcgatattt tcagcaacca attttgcgtc taggtcagca cgtttgattt
    21121 ctacgatatt gatatgaaca cgtttttgag taagttcgtt caagtttttg cgtaatgctt
    21181 caacttcaga accaccttta ccgataacca taccaggttt tgcagtatga atagtgatat
    21241 tcacacggtt agctgcacgt tcgatttcta cacgagaaac agaagcgtca gatagacgtt
    21301 ttgcaacgta atcacggatg cgtaaatctt catgtaagaa gtccgcataa tctttttccg
    21361 cgtaccattt ggagtcccaa tcacggatga caccgatacg catacctatt ggatgtactt
    21421 tttgacccac gaattatccc tccttcactt cagataccac aactgtgatg tggctagtac
    21481 gtttgttgat tgcacttgca cgaccttgtg cacgtggacg gaaacgttta agtgttggac
    21541 cttcgtcaac aaatgcttcc tctactacaa ggttgttaat gtctaaatca tagttatgct
    21601 ctgcgttagc aatagcagat tttaatactt tttcaataat tggggaagct gatcttggag
    21661 tatacttcaa gattgcaatt gcttcgccaa cttgcttgcc tcgaattaaa tcaatgacga
    21721 ttctagcttt gcgaggagca atacgaaccg ttttggcaac ggcttttgcg cttgtaactt
    21781 cacttgccat taggatatcc tcctctcaaa ttagcgttta gtttttttat cgtcgcccgc
    21841 atgaccgcgg tacgtacgag ttggtgcgaa ttcgcccagt ttgtgtccta ccatatcttc
    21901 ttgaacataa acaggaacgt gtttacgtcc atcatatact gcgattgttt gtccaacaaa
    21961 agttgggaaa atcgtggagc gacgagacca agttttaatt acttgtttct tttcgctttc
    22021 tgctgctgct tccactttct tcatcaagtg gtcatcaaca aaaggtcctt ttttcaaact
    22081 acgacccatg acggaacctc ccttcgcata gtcaggaagc tgagaacgca tgtcctcgct
    22141 atcctgctac caattttatt caatctattg atccgattat tttttcttac gacgacgtac
    22201 gataaattta tcggagttgt tgtttttctt acgtgttttg tatccaagag ttggtttacc
    22261 ccatggagac attggcgatt tacggccgat tggagcttta ccttcaccac caccgtgtgg
    22321 gtgatcgttc gggttcatta cagatccacg aacagttggg cgtttaccca tccaacgtga
    22381 acgacctgct ttaccgatgt tgataagttc gtgttgttcg ttaccaactt gaccgattgt
    22441 agcacggcaa gtagcaagaa tcatgcgaac ttcaccagag tttaagcgga ttaatacgta
    22501 tttaccttct ttaccaagca cttgagcact tgttccagca gaacgtacta attgtccacc
    22561 tttaccaggt ttcatttcga tattgtggat aacagtaccc actggaatat cttttaattc
    22621 tagtgcatta ccgactttga tatcagcttc tgctcctgaa taaattgttt gacctacttc
    22681 aaggcctttt gctgcgatga tgtagcgttt ttctccatca gcatagttga ttagagcaat
    22741 attagcagaa cggtttggat cgtactcgat cgttgcaacg cgtccaggaa taccatcttt
    22801 gttacgtttg aaatcaatca cgcggtattg gcgtttatgg ccaccgccgt gatgacgaac
    22861 agttaactta ccttggttat tgcgtccggc tttcttttta agaggacgta gtaaagattt
    22921 ttctggagta cttgtagtaa tctcagcgaa atcagaacta gtcatgtgcc ggcgcccgtt
    22981 agtggtaggt ttatactttt tgatcgccat tgtttcccct cctcgttaga tttatttaaa
    23041 gttagtcgaa ttatacttca aagaattgaa tttctttgct gtcagctgta acagtaacaa
    23101 tcgctttacg gcgtttgtta gtgtaacctg cataacggcc catacgttta agtttgcctt
    23161 tgtaattcat tacgtttact ttagcaactt ttacgtcgaa aatttcttca actgcgtatt
    23221 ttacttgcgt tttagttgcg cgagtatcta cttcaaatgt atatttctta tcgtcgagaa
    23281 tacttgtaga ttcttcagtt acaactgggc gcttaatgat gtcgcgtgca tccattatgc
    23341 gagcacctcc tctacttttt cgacagctgc tttagtgata attaatttat catgtttagc
    23401 aacttctagt actgagatac tttcagctgg aataactgta atgccttgta agttgcgtgc
    23461 agataattct acattttcac tttcaccggc aactacgatt agtgccttag tatctacaga
    23521 gatattttta agaaaagccg caaattcttt tgttttaggt gcatcgaaag tcaaaccttc
    23581 aagtacaact aatttttctt catttacttt agaagaaaga attgatttaa tcgctaaacg
    23641 acgaactttc ttaggtaatt tgtatgcata tgaacgaggt gttgggccga atacgacacc
    23701 accgccacgc cattgcgggg aacggattga accttgacgg gcacgacctg tacctttttg
    23761 acgccatggt ttacgtccgc caccacgtac ttctgaacga ttttttactt tgtgagtccc
    23821 ttgacgtagg gatgcacgtt ggctcaaaat cacatcaaca acaacttttt catttggttc
    23881 gataccgaaa acagtgtcgt ttaaagtaat ttcgccagcg tttgttccat cttgtttaag
    23941 taagcttaat tttggcattc gttagtcctc ctttccaaat gaattatttt gctttagtag
    24001 cagttttaat ttgaactaat gcttttttag cgcctggaac gttacctttt actaaaagaa
    24061 cgttcttttc aacgtctact ttaacgattt ctaggttttg gatagtgatt tgttctccac
    24121 ccatacgacc tggaagtagt ttatttttga aaacacggtt aggtgctact ggacccattg
    24181 aacctgggcg acgatggtaa cgggaaccgt gggccatagg gccgcgtgat tgtccgtggc
    24241 gtttaataac accttggaat cctttacctt tcgatacgcc tgtcgcgtcg atgatgtcac
    24301 cttctgcgaa tacgtctact tttacttctg caccaatctc atactcgtct aagtttacat
    24361 cgcggaattc gcgaatgaag cgcttaggag tagtattggc ttttgctaca tgaccttgtt
    24421 cgggtttgtt tgacaaaatt gctctcttat cttcgaaacc gatttgtaca gcttcatagc
    24481 cgtcagtttc aacagttttc ttttgaagta ccacgttttg tgctgcttcg attactgtta
    24541 ctggaataag ttcgccgttt tcagtgaaaa cttgtgtcat ccctactttt ctacctaaga
    24601 ttcctttggt catgagtcac acctcctgtt aatttaatat attcttatta tagtttgatt
    24661 tcgatgtcca caccgcttgg caagtctaaa cgcatcaagc tatcaactgt ttgtggtgtt
    24721 ggattaacga tgtcgattaa acgtttgtgt gtacgcattt cgaattgctc acgagagtct
    24781 ttatatttgt ggaccgcacg caagactgtg tagattgact tctctgttgg aagtgggatc
    24841 ggaccagata cagaagcacc tgagcgtttc gctgtttcta caatcttttc tgctgattga
    24901 tccaaaatac ggtgatcata agcttttaaa cgaatacgaa ttttttgttt tgccattact
    24961 ttccctcctt ttcgcctact tttaaagtag acattctccg tgaaaattac ctgaacatcc
    25021 gccatggcaa agcggccggg tgtgtcagca acctttcact tcatcacatg ggcattcccg
    25081 gcaataccgg ggtgctcgtt gtcaaaaggg cagaccaatg cctgtccatt tgcactttat
    25141 ctattataca cgggttaggg atagtaatca accgcttttt gaaaaaagtt ttaagttatt
    25201 ttcataggaa ctattatata gaagattctc ggttttggtt tatcttcaaa ctgtctgaca
    25261 gagccattct gctcatttta tccaaaagaa aaaaacatcc gttaatatcg aatgttttta
    25321 agatgttctt agtattacga gtcccgcggt taaaagtatc attacacatg ccgcaatcaa
    25381 atctccaaaa tgccaatgca atattcggaa tctcgtgcgc ccttcgcctc cttgataccc
    25441 tctcgcttcc attgcatccg ctaattcttc cgctcggtta aacgaactaa caaataacgg
    25501 aataaaaatc gggacaacaa ctttcatttg ttcgaaaaga ttaccttcac caaaatccac
    25561 tccgcgagct cgctgcgctt tcataatttt atctgtttct cccataaggg ttggaataaa
    25621 gcgaagtgcc accgaaatca ttaatgcaat gtcattcacc ggcactttga gtacagcaaa
    25681 cggacgaagg atgtaagcaa ttgcgtctgt caggttcata ggcgtcgttg tgagcgtgat
    25741 aacggtcgac atcatgataa ttaagacaaa gcgcaaaaac acaaataccc cgttcaaaag
    25801 cccaaatgaa gagattgtaa atggacccca atcaaaataa atcgttccgc cactcgcaaa
    25861 tagtatttgc attactactg taaataaaat tagccaaata agtggtttta caccttttat
    25921 aaacactttt aacttgatac ctgtcatttg aatgaccatg agtgtgaaca aaaccattaa
    25981 ggcgtatgtc caccagttat tcgctaaaaa taaaatgccg atataataaa agcctgctaa
    26041 aagtttcgtt cgcgcatcca gaccatgaat taaggactcc cctgggacaa aacgacctaa
    26101 tattagtttt tcaatcattc aaagaagccc ccttttcttt acgccagttg ttgaagtacc
    26161 acgctcaccg ccattaaaat tgtcaatgtc gcattaatta atacgaaatt acgaatacca
    26221 ataacaaatg tttttgattt tacttgttct ttattgaatt taactagatt acgatacact
    26281 ggatagattg ttattagtga tagtaacatg attggatgta agaagtttat agctaccgaa
    26341 acaaccacag ctaaaaatga agcataatat aaagcattaa ataataagac tcccattttt
    26401 cttcctatat aatacggaag tgtgtaacga tgattccgaa tatcttcatc taaatcacag
    26461 agattattcg cgagcatgat attagctatt gtgaaaatac aaggtaagga taccacacct
    26521 atccgaataa tttctattag attgaactgg attgtcaccg tttctccttg ccaaagtaaa
    26581 ttcgctattc ccgcgtcgta tgcatttaca tatacagcta agaagaaaat cccaaacccc
    26641 atcgttacgc ctgaaaaaat ttcacctaac ggcatacgag aaagcggtac aggaccgaat
    26701 gtatataaga tgcctataca aaagcagaca aatccaatta agagcactaa aagatctgtt
    26761 cgaaaaacta accaaacacc taatcctgta gcaatgaaga acatcaagaa aatagttata
    26821 ataactgttc gcaccggaat ttgctcttgc ccaattacat tgctggtagt tcgataatcg
    26881 taatcatgat tgtctgttgc tttgcggtaa tccatatagt tattaatcgc tgttgtagtc
    26941 aagtcgaata tgagcataga tccgaaaaat atcaacgtat taacaggttt gaacatatca
    27001 tattgataca caacaaatag cgttcctaac ataaacggaa aaacactagc tatcttcgtt
    27061 tggatttcaa ccaacttcag aaacgatggt attgacatat ccccttttta gccccttttc
    27121 tagtttattg tgagcagaat ccagagcgaa ttctgctcac tttcttctat aataatagtt
    27181 tattttttta gcgtgtccat ctggaagtct ttatccgtta attcgaattg accttttaag
    27241 ccagaagttt cgtatacttt tttctcttta ctgatgaaaa tagcatctac accttcaaat
    27301 tgttcaatgt agtccatgcc acctttaacc cctttggaga aagtagcggt ggatagaccg
    27361 tcgccatcaa ttgatttttt agatacaatc gaaactccag cgatatcatt gtcaaacgga
    27421 tatcctgttt tcgggtctaa gatgtgatga tatgttttac catccacttc aaggtaacgt
    27481 tcataaatac cagaagttac gatagacata ttagattcag gaagtttccc aataacactt
    27541 ccacgcggag aaaacggatc ttgaattccg acattccatt tgttgccatt cgggttgttg
    27601 ccttgaacat aaatgtttcc acctaaatct atgatagagg ttgttacttt attttctttg
    27661 aataccttta aagtctcgtc agtaatgaag cctttagcaa ttgcccctaa atctagttcc
    27721 ataccttctt tttccaagta tactgtttgg tctttatcat tcattttaac gtctttgtaa
    27781 ttaattaatg gtaacaccgc gtcaatttct gcttgagaag gtttgcgcgc atcagaaaaa
    27841 ccgatgtgcc atagagatgt taacggccca atagtaatat cgaagctacc accagagttc
    27901 tcggagtatt taagcccttc ttgaattaag tagtatacat ctttagatac tttcactggt
    27961 tttttgccgg cttgttcgtt gattttatcc acttcagacg ttttttccga atcacttgtg
    28021 gtaatcttgg cagctagatc tttgattcga tcgaagcctt tatcaagcac gtcttctttg
    28081 cctttatcat aaattttaag cgttactact gtgcccatta gaaagtctgt tttggagtat
    28141 ggttgatcca ttagtttttt tgaatcactt ggttcactct ttgtttcttt actagaattt
    28201 ccacacgctg atacaacaag cgccaatatg ataactgaaa ttattatttt ccatttcttc
    28261 attagctttt tcacctttct aaatccgtga tctttacttg aataactata gcgtaaaaaa
    28321 aggaataaat ctacagtaaa aaggcttaat tcctctgttt ttcgataaaa aaatcggcta
    28381 gccctagaaa ttaggaccag ccgttttgta cataaatttc gctaattatt cagcttctac
    28441 taggttgtac actttaattg tgtcagtgtt accattttgt gcagcatttt gaagttgagc
    28501 tgcgtagatt ttgaattggt tagaagagtt agtagcacca gaaacagtgt ctactgcagc
    28561 aacgtcttgt ttttcaacaa gagatttgtt aagtgctggg atgtattctt ttggaccagt
    28621 accagattta gctttcatgt ttttctcgta gtcagcatcg tctgatttaa gtttgccgtc
    28681 tttgtcaaca tagttgtagt cagatttagt gattttgcca tctttaacat ccatgctgaa
    28741 tactacacgg taaccatgtg cgtaattttg ttcttcaagt ttataagttc catcttccat
    28801 tttagctaag ttgttgatgg aaattgtagt tgtatcagct ttttgagctg cttggattaa
    28861 ttggttagca tagttgatga aagcgtcaga agaatgagtt gctcctgaaa ctacttctac
    28921 agatgctgca gattgatttt taactaaaga atcgcttaat tgtttcaagt attcttgagg
    28981 accagttcct actttatctt tcattgcttt ttcgtagtct gcatcttcag attttaattt
    29041 gccatctttg tttttgtaat cgtagttagc ttttgtaatt ttaccatctt taacttcgat
    29101 tgacatgaaa cctttccagc ctttgtcgtc gaaattcttt tcttctaatt tgtaagtacc
    29161 atcagtcata gtaccatcag ttttagctgt tttctttgtt tctgtttgtt ttgtgtctgt
    29221 gctctttttg tctttgctgc tgtcgtcact gctaccgcaa cctactagta ataaacttga
    29281 agccattacc acggtaatac ccattgctac ttttttcaat ttcatgtttt gctcccacct
    29341 tttgttttat tgattaactt tgtttgtgat ttcgtgaaca caaaccgata gtctgcgaaa
    29401 gcgatatcac ttttacaata caaatgatac catcagcgcc cggttttgtc tactgtaatt
    29461 ctaaagacat aattcatcta attttc
//
LOCUS       DASDXX010000012        28675 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.012, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000012 DASDXX010000000
VERSION     DASDXX010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 28675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28675
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.012"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(24..1385)
                     /gene="rlmD"
                     /locus_tag="U0280_000450"
     CDS             complement(24..1385)
                     /gene="rlmD"
                     /locus_tag="U0280_000450"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM2270410.1"
                     /translation="MEASLLKKNQSIELTIEDLTHDGSGVGKIDGYPLFIPNTLPGEK
                     VTAKIIKLNKNYGFARMETIESVSADRVEPPCAVYSKCGGCSLQHLSYEGQLAFKRNQ
                     VEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMS
                     TCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTT
                     KERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRF
                     AISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGV
                     EIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEK
                     LLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL
                     HLN"
     gene            complement(1409..2164)
                     /locus_tag="U0280_000451"
     CDS             complement(1409..2164)
                     /locus_tag="U0280_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270411.1"
                     /translation="MTSGHQFKRFTMIIIVLIIAIAAAVFFFWQVDAEEQAPKVSKTE
                     LIESNKVWINNQMQIPIQDNIILSIPAANTNTTIATNGDLILETTNEEILNELASSDN
                     RYKGIKAYRLRIEAKKVSEYITNTKYRYPTTTIQKKFANYEITSGERSVQTEKTPVKI
                     EDTTNNNIKVSLKTSYSSDDAEVAAGIFNSQIPEETTITDNTKALTTNKNVTIYPKTF
                     IYDFTLQKNTMLVFKEQEEAVIKEPIGIEYIIK"
     gene            complement(2312..3244)
                     /locus_tag="U0280_000452"
     CDS             complement(2312..3244)
                     /locus_tag="U0280_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEM2270412.1"
                     /translation="MQKHARVIYNPTSGREIIKKNLADVLSILEQAGYVTSAHATTAE
                     PDDAKHAAEEAVRDRFDLVVAAGGDGTINEVINGIAEKEYRPKVGIIPTGTTNDFARA
                     LHVPRDVIKATKIIAAGQSVAMDIGKANETYFINIGGGGRLTELTYDVPSRLKTMLGQ
                     LAYYLKGIEMLPSLKATKVKVEYDQGVFEGEVMFFLLGLTNSIGGFEKIAPDAKLDDG
                     KFSLIIVKKVNLAEFIRLVTLALRGDHIKEPNVIYVKSEKVIVNSEDKMLINLDGELG
                     GETPMEFRNLRQHIEFFASVDDIPATDLFIKENS"
     gene            complement(3390..4820)
                     /gene="gatB"
                     /locus_tag="U0280_000453"
     CDS             complement(3390..4820)
                     /gene="gatB"
                     /locus_tag="U0280_000453"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEM2270413.1"
                     /translation="MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNTNTTVVDLGM
                     PGVLPVLNKRAVEFGMKAAMAINCEIAKHTKFDRKNYFYPDNPKAYQISQFDKPIGEH
                     GWIEIEVGGKKKKIGITRLHLEEDAGKNTHTSHGYSLVDINRQGTPLIEIVSEPDIRS
                     AEEAYAYLEKLKSIIQYTGVSDVKMEEGSMRCDANISIRPIGQEEFGVKTELKNLNSF
                     NNVRKGIEYEEKRQAEVLKSGGIIDQETRRFEEATGKTSLMRIKEGSDDYRYFPEPDL
                     VDLFIDDAWKERIRAEIPELPDKRQIRYINDLGLPAYDAMVLTLTKEMSDFFEATLAA
                     GADAKQASNWLMGEVSAYLNAEQKELHETGLTPENLAGMIKLIEAGTISSKIAKKVFR
                     ELAQNGGDAEQVVKDKGLVQISDEGALRTIISEILDNNEQSIVDFKNGKDRAVGFLVG
                     QVMKATKGQANPPMVNKLLLEEMNKR"
     gene            complement(4832..6283)
                     /gene="gatA"
                     /locus_tag="U0280_000454"
     CDS             complement(4832..6283)
                     /gene="gatA"
                     /locus_tag="U0280_000454"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEM2270414.1"
                     /translation="MGLFDFSVKELHDKLVKKEISPFDLVSESFNRIESVEDKVGSFI
                     TLNKEAAFGVAEELGDAGIDPNNMLSGLPIGIKDNIVTKNLRTTAASKILENFDPIYD
                     ATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAV
                     AAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNV
                     EDNAYLLEAISGLDANDSTSINQPVERFSNSLTGDIKGLRIGVPKEYLGEGVDPGVKQ
                     AVLDALKTLEKLGATWDEVSLPHSEYGVASYYILASSEASSNLSRFDGVRYGYRSPNA
                     TTLEELYTKTRSEGFGDEVKRRIMLGTYALSSGYYDAYYKKAQQARTLIKQDFVNVFE
                     NYDVIIGPSSPTTAFKIDGMINDPITMYSNDILTVPINLAGVPAISVPCGFSDGLPVG
                     LQIIGNYFEESLLYKVAHAFEQETTFHKEKPNL"
     gene            complement(6307..6600)
                     /gene="gatC"
                     /locus_tag="U0280_000455"
     CDS             complement(6307..6600)
                     /gene="gatC"
                     /locus_tag="U0280_000455"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEM2270415.1"
                     /translation="MSNISKETVEKVANLAKLEVSETEATAFAGQLGKIIELVEQLNT
                     LDTTNVEPTSHAIDVSNVLREDVATKGLDRKEVLKNAPDEQDGMFKVPTIMEQ"
     gene            complement(6725..7840)
                     /locus_tag="U0280_000456"
     CDS             complement(6725..7840)
                     /locus_tag="U0280_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CamS family sex pheromone protein"
                     /protein_id="HEM2270416.1"
                     /translation="MKKIIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKN
                     QISSNYYKTVLPYKASKSRGLVVSNIYSRYDINELESGLMRVSQNKYSPDNYLFQEGQ
                     YLDKETLEKWLDRKSDKNPNGLNPASNGNGENRNPIYLAHILEQDYLKQTDKDTVALG
                     GISIALAMNSVDYYQKEKYGDTYEQPISNSELLAQGKEMSTTVLNRIRQTKGLENVPV
                     TIAIYKQGARDAVAPGNYIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNF
                     LNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQ
                     HIPKTADLQVNISTSDGPAALITRKANEDAATAHIYD"
     gene            complement(7837..9852)
                     /gene="ligA"
                     /locus_tag="U0280_000457"
     CDS             complement(7837..9852)
                     /gene="ligA"
                     /locus_tag="U0280_000457"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEM2270417.1"
                     /translation="MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKI
                     EEAHPEWVTPESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG
                     DDIAYMCELKIDGLAVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY
                     SIEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFL
                     YAVADFGEMGVETHSAGLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYD
                     IDGIVLKLNNLEQQRQMGNTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTA
                     VLEPVRVAGTTVSRASLHNEDLITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSE
                     EPFHMPKNCPACDSELVRLEEEVALRCINPKCPAQIKEGLIHFVSRNAMNIDGLGEKV
                     IIQLFSQHLIKDVADLFFLSKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLG
                     IRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEEVHDLLE
                     ELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSG
                     SVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEGGLNE"
     gene            complement(9878..12073)
                     /gene="pcrA"
                     /locus_tag="U0280_000458"
     CDS             complement(9878..12073)
                     /gene="pcrA"
                     /locus_tag="U0280_000458"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HEM2270418.1"
                     /translation="MNAKELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIA
                     YLVRERGVNPYNILAITFTNKAAREMKSRIGNLMGGEAESIWISTFHSMCVRILRRDI
                     DRIGYERNFTILDGSDQLSVIKGILKEKNVDPKKFEPRGILASISNAKNELITASEYI
                     KEASGFYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVLEYYQRKFQYI
                     HVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSFEKDYPNAK
                     TILLEENYRSTKRILEAANRVIENNGNRKPKNLWTSNAEGKKIFYHKALTEKEEAAYV
                     VMKIQEEVNNSNRPLSDFAILYRTNAQSRVMEEYFMKSNMAYTMVGGTKFYDRKEIKD
                     ILAYLRLISNNEDDISLTRIVNVPKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAG
                     ISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEKTGYRAMLKNERTIEAQTRLE
                     NIDEFLSVTQNFEKENDDKTLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKG
                     LEFPVVFLVGMEEGIFPHSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYG
                     RPSSNQESRFIGEIPRDLLELGNENKLKADKPYAKPRMPQKTTTAYKSSGAETLGWTV
                     GDKASHKKWGVGTVVSVKGEGSGMELDIAFPSPTGVKRLLAEFAPIEKV"
     gene            complement(12138..12815)
                     /locus_tag="U0280_000459"
     CDS             complement(12138..12815)
                     /locus_tag="U0280_000459"
                     /EC_number="2.5.1.n9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl phosphate synthase"
                     /protein_id="HEM2270419.1"
                     /translation="MKHLFKLDPAKNLPMNDLTKLVHSGTNGFIIGGTDNVQIEAVQK
                     LYELLGETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHQELIKEMGAFI
                     PWKRVTAEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMY
                     GDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMVKYADTIIVGNIIYEDLEKALETAT
                     IFRKKTV"
     gene            13022..14377
                     /locus_tag="U0280_000460"
     CDS             13022..14377
                     /locus_tag="U0280_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEM2270420.1"
                     /translation="MQENREEWGSKVGFILASAGSAIGIGAIWKLPYVAATAGGGAFF
                     LLFLVLTLLVVMPLLIAEFVIGRGSGGDAVQAYKTLAPGTKWNLLGKLGVVGASILFS
                     FYSVVGGWIITYLIKTLAGGIAGENQASLLHDFQVTTANPWISVGATILFILLNVIVI
                     SRGVVSGIEKMSKFMMPALFILFIVLIIRSLTLPGAMEGVAFFLRPDFSHFTAQTVLI
                     TLGQAFFSLSVGISVMVTYSSYLNRSTSLPQSAISVSLMNVFVSLLAGLAIFPAAFSF
                     NITPDAGPGLLFVILPSIFNQMPFGMLFFIIFLILFLFAALTSSFSMLEATVAPLMNA
                     GVNRKKASLWMGLVIVLMAIPSALSFGVWSDVQIFGLSIFDAADYLVSNIVLPVGALF
                     IAIFVGYRLPRELLLKEFTTSSHFGKKVFILWLFLIKYIAPIAIIFVFLSATGLIDFL
                     F"
     gene            complement(14420..14674)
                     /locus_tag="U0280_000461"
     CDS             complement(14420..14674)
                     /locus_tag="U0280_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270421.1"
                     /translation="MKKFNSKTYQIVIISILALAVIYFVINMIATGTGLDFSLLWHWV
                     FIICFIFTTLANVREKRAIGTAIGLSGILICVTSIVLMAI"
     gene            complement(14691..14987)
                     /locus_tag="U0280_000462"
     CDS             complement(14691..14987)
                     /locus_tag="U0280_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2270422.1"
                     /translation="MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMA
                     QRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDMYDVVFSRMTKPE"
     gene            complement(15126..16388)
                     /gene="purD"
                     /locus_tag="U0280_000463"
     CDS             complement(15126..16388)
                     /gene="purD"
                     /locus_tag="U0280_000463"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEM2270423.1"
                     /translation="MNLLVVGSGGREHAISKKLLESNNVENVYCAPGNDGMRLDNIQL
                     VAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEG
                     SKDFAKQFMEKYAIPTAASKTFTDYAEAKAYLDERGVPIVIKADGLAAGKGVTVALEM
                     EEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMAIAQDHKRAY
                     EGDKGPNTGGMGAYSPVPHISETVVDEAVEKILLPAAKGMVKEGRYFRGILYAGLILT
                     AEGPKVIEFNARFGDPETQVVLPRLESDFAALIDALLHNEKPDVRFKKSGITLGVVLA
                     SAGYPEHYEKGNKLTGLNDVAEDVAIYHAGTKQDENDDFISDGGRVLLLAKEAETMTD
                     ARTLLYPEMQKLDNPNFFYRIDIGTKAE"
     gene            complement(16413..17942)
                     /gene="purH"
                     /locus_tag="U0280_000464"
     CDS             complement(16413..17942)
                     /gene="purH"
                     /locus_tag="U0280_000464"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEM2270424.1"
                     /translation="MKRALISVSDKNGIVPFAEKLVELGVEIISTGGTKAAFEQAGVP
                     VTGIEEVTEFPEMLDGRVKTLHPAIHGGLLARRDTAEHMEAIAAHDIKPIDLVVVNLY
                     PFQETIQKSGVTLEEAIENIDIGGPSMLRSAAKNYAAVTVVVDTADYDTVLTELEEHG
                     ATTFETRQRLAAKVFRHTAAYDALIAEYLTNITGETFPEKVTLTYNRKQVLRYGENPH
                     QDAAFYTEPGTVENSISSAKQLHGKELSYNNIRDADAALKIASEFTEPVAVAVKHMNP
                     CGVGVGENIEEAYLKAYEADETSIFGGIVALNKEVDAKTAEHMSKIFLEIIIAPSFSE
                     EAFAILAKKKNIRLLTVPFAGSVKGFEKTSVNGGLLIQASDSVIEDTASYEVVTEKQP
                     TEAEMKALIAQWKIVKHVKSNAIVVGSDKQTLGIGAGQMNRIGSALIALKQAGEKAKG
                     AVLASDAFFPMDDTVEAAAKAGITAIIQPGGSIKDKESIEMANKYGISMVLTHVRHFK
                     H"
     gene            complement(17948..18514)
                     /gene="purN"
                     /locus_tag="U0280_000465"
     CDS             complement(17948..18514)
                     /gene="purN"
                     /locus_tag="U0280_000465"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEM2270425.1"
                     /translation="MNIAIFASGNGSNFQALVDDAFIKPHVKLLVCDKPNAYVLERAN
                     THQIPVFLFEAKNYPDKEAFETEILLELRGLEIDLLVLAGYMRLIGPTLLAEFPEQIV
                     NLHPSLLPEFKGKDAIGQAIQANVSETGVTAHFVDAGMDTGPIIDQVKVPIEHAETVD
                     TLAGKIHQVEHIFYPKVIRGLIQNGGND"
     gene            complement(18511..19560)
                     /locus_tag="U0280_000466"
     CDS             complement(18511..19560)
                     /locus_tag="U0280_000466"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEM2270426.1"
                     /translation="MAENAYSKAGVDVEAGYQVVERIKKHVARTERLGAMGALGSFGG
                     MFDLSSLHLKEPVLVSGTDGVGTKLLLAIEADKHDTIGIDCVAMCVNDILAQGAEPLF
                     FLDYIATGKTDPVKMEQIVKGVADGCEQAGAALIGGETAEMPDMYGAEDYDLAGFTVG
                     AVEKQKLITEGAVKEGDTLIGIPSSGIHSNGYSLVRKIFFKDNELTLDAEISELDVPL
                     VEELLKPTRIYVKPVLEVLKEVDVHGITHVTGGGFVENLPRMLTNDLAVKVELGSWPV
                     LPIFDVMKKYGQLSELEMYEIFNMGIGMVLAVAKADVERTLEVLVQNGEAAYVIGEVT
                     TRENDAVIFTGGTKG"
     gene            complement(19579..21006)
                     /gene="purF"
                     /locus_tag="U0280_000467"
     CDS             complement(19579..21006)
                     /gene="purF"
                     /locus_tag="U0280_000467"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEM2270427.1"
                     /translation="MLAEVKGLNEECGIFGIWDHPNAAEITYYGLHSLQHRGQEGAGI
                     VSTDGETLKGHRNLGLLADVFKHGELDDLKGKAAIGHVRYATAGQKNLGNVQPFLFHF
                     HSSSLALAHNGNLVNAKSLRRELEEEGAIFQTSSDTEVLAHLIKRSHTGDFVEDLKVA
                     LNKVKGGFAYMLLTEDTMYAALDPNGFRPLSIGRIGDSYVVASETCAFETVGAEFVRD
                     VEPGELIIINDDGLRIEKFTENVTHSICSMEYIYFARPDSNIAGINVHSARKRSGKRL
                     AKEAFIDADVVTGVPDSSISAAIGYAEEAGLPYELGLIKNRYVARTFIQPSQELREQG
                     VRMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVQLLREAGAAEVHVRIASPPLAYPC
                     FYGIDIQTRNELIASNYSVDEICRIIGADSLEYLSEEGLVDSIGRPYPNEPYGGLCMA
                     YFNGDYPTPLYDYEAEYLASLEAEK"
     gene            complement(20991..23210)
                     /gene="purL"
                     /locus_tag="U0280_000468"
     CDS             complement(20991..23210)
                     /gene="purL"
                     /locus_tag="U0280_000468"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEM2270428.1"
                     /translation="MPNMEPTTKEIKEQKIYQEMGLTDSEYELVCSILGREPNYTETG
                     LFSVMWSEHCSYKNSKPVLRKFPTEGKQVLQGPGEGAGIVDIGDGLGVAFKVESHNHP
                     SYVEPYQGAATGVGGIIRDVFSMGARPIAMLNSLRFGELDTPHAKYLVSEVVAGIAGY
                     GNSIGIPTVGGEIQFDPCYTKNPLVNAMCVGLIEAKDIQKGQAKGIGNPVMYVGAKTG
                     RDGIHGATFASVEFSEEGEQQRSAVQVGDPFMEKLLLEACLDVIRDHSDILVGIQDMG
                     AAGLVSSSSEMASKAGAGLELIMDDVPQRELNMTPYEMLLSESQERMLLCVKKGHVEE
                     IQALFERYGLEAVVIGQVTDDKMYKIIHHGEVVANVPVDALAEDAPVYHKPSKEPARY
                     QAFQEEESFVPVMEDVVGVWKELLAQPTIASKRHIYEQYDYQVRTDTAVVPGSDAAIV
                     RVRGTEKAIAMTTDCNSRYLYLDPEVGGAIAVAEAARNIVCSGGKPLAITDGLNFGNP
                     EKPEIFWEIEKAADGISAACLELDTPVISGNVSLYNETDGTGIYPTPVIGMVGLVEDL
                     AHITTQDFKNSGDVIFLIGETKAEYSGSELQKLQQGKISGRAPELDLTTEKKYQQLLL
                     TAIQEGLVASSHDLAEGGFGVALAEATFKAGLGADVEVPFELNQLFSESQSRFLVSVK
                     PENEAAFAQLMELEKVYRLGVVTEDDTIRVKHKENQVTAKTTELRSIWEGAIPCLLK"
     gene            complement(23203..23886)
                     /gene="purQ"
                     /locus_tag="U0280_000469"
     CDS             complement(23203..23886)
                     /gene="purQ"
                     /locus_tag="U0280_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEM2270429.1"
                     /translation="MKFAVIQFPGSNCDLDMLHAIRDSLGEEAEYVWHAETSLAGFDA
                     VLLPGGFSYGDYLRTGAIAKFSSIMPEVLRFAEMGKPVLGVCNGFQILTEIGLLPGAL
                     IRNNNLHFICKTVPLRVANASTMFTGLYKEGEIIQVPVAHGEGNYYCDDETLLKLKDN
                     NQIVFTYDSVNPNGSRADIAGIVNERGNVLGMMPHPERAVEEIIGGTDGLRLFESVVK
                     AWKEEQVNA"
     gene            complement(23890..24135)
                     /gene="purS"
                     /locus_tag="U0280_000470"
     CDS             complement(23890..24135)
                     /gene="purS"
                     /locus_tag="U0280_000470"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEM2270430.1"
                     /translation="MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFME
                     LKVVKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA"
     gene            complement(24147..24860)
                     /locus_tag="U0280_000471"
     CDS             complement(24147..24860)
                     /locus_tag="U0280_000471"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEM2270431.1"
                     /translation="MTNELVYEGKAKRLFKTEEAGVLRVAYKDDATALNGVRKESFAG
                     KGELNNQITSLIFSHLAGAGIESHFIRAISETEQLVKEVSIIPLEVVVRNVMAGSLAK
                     RLGKEEGELIPNAIVEFYYKDDALDDPFINDDHVLYLELATTSEMDIIRQAARSINKV
                     LQELFNQMNITLIDFKLEFGRDATGNILLADEISPDTCRLWDKETNQKLDKDVFRRNI
                     GNLTDVYTEVLNRLKQVQN"
     gene            complement(24941..26233)
                     /gene="purB"
                     /locus_tag="U0280_000472"
     CDS             complement(24941..26233)
                     /gene="purB"
                     /locus_tag="U0280_000472"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEM2270432.1"
                     /translation="MLERYTRKEMGNIWTEQNRYQAWLEVEILACEAWAELGDIPKED
                     VAKIRANAKFDVDRIHEIELETRHDVVAFTRSVSESLGAERKWVHYGLTSTDVVDTAN
                     SYLLKQANEILRKDLENFIAIIGEKAKEHKYTVTMGRTHGVHAEPTTFGLKLALWYEE
                     MKRNLERFNFAADGVEFGKISGAVGTYANIDPFVEAYVCEKLGTTPAPISTQTLQRDR
                     HAEYLATLALIATSVEKFAVEVRALQKSEVREVEEFFAKGQKGSSAMPHKRNPIGSEN
                     VTGLARVIRGHMVTAYENVPLWHERDISHSSAERIILPDSTILLDYILNRFGNIVKNL
                     TVFPENMKRNMDRTLGLIYSQRVLLALIDKGLAREAAYDVVQPRAMEAWEKQVPFREL
                     VEQDATIIENLSAEEIADCFDYNYHLKNVDLIFDRLGL"
     gene            complement(26252..27376)
                     /gene="purK"
                     /locus_tag="U0280_000473"
     CDS             complement(26252..27376)
                     /gene="purK"
                     /locus_tag="U0280_000473"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEM2270433.1"
                     /translation="MDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADC
                     PAAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELL
                     SITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQV
                     VIHDARDIETAARLLRYGSCVLEAWIPFEKEISVVVARNLEGQIETFPVAENVHVNNI
                     LHTTTAPADVADDVHEEAEEIARKLADVLQLCGVLAVEMFVTKSGAIYVNELAPRPHN
                     SGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPALMINILGQHVDAVNKQMVNYPHW
                     FVHYYGKKEAKINRKMGHVTVLADEPKAVIQDLEETQIWK"
     gene            complement(27369..27857)
                     /gene="purE"
                     /locus_tag="U0280_000474"
     CDS             complement(27369..27857)
                     /gene="purE"
                     /locus_tag="U0280_000474"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEM2270434.1"
                     /translation="MPAVIGVIMGSTSDWDTMKKACDVLDELEIAYEKKVVSAHRTPD
                     LMFQYAEQARERGLKIIIAGAGGAAHLPGMIAAKTTLPVIGVPIKSKALNGMDSLLSI
                     VQMPGGVPVATVAIGESGAVNAGLLAAQILSITDDAITNRLQKRRATLEETVLESSDY
                     LG"
     gene            complement(28063..28587)
                     /locus_tag="U0280_000475"
     CDS             complement(28063..28587)
                     /locus_tag="U0280_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2179 domain-containing protein"
                     /protein_id="HEM2270435.1"
                     /translation="MDNGIFIVATIFIVNILYVTIYTVRLLLTMKGYRYLAALSSVFE
                     MIIYVVALSLVLDNLNNIANVLAYAIGFGVGIIVGMKIEERIALGYITVNVITKEYNL
                     DLPNQIRDLGYGVTSWLASGRDGERMMLEILTQRKNERKLYKHIIEIDNGAFIVSSEP
                     KQIHGGFWVKQVRK"
BASE COUNT         7958 a         6381 c         4807 g         9529 t
ORIGIN      
        1 ccattatggc ggtttttgta tacttaattt aaatgtagaa cagtcacagc ttctatatgt
       61 gttgtcattg gaaacatatc tacaggctga acttttttcg ctacatagcc gccatccgtt
      121 aagattttca tatcacgggc caatgtccct ggattacaag aaacatatac tacttttttt
      181 ggtttcattg ctaaaattgt ttccagtaat ttttcatcgc acccttttcg tggtggatcg
      241 acaactaaga cgtctgctac aattccagct ttgtaccacg ccggaataac ctcttctgct
      301 ttccctgtct caaaagtagt attcgctaat tcattgagtt ctgcatttgc acgagcatct
      361 tgtatcgctt gatccacaat ttctaccccg tagacatgct tggctttttt cgcgagacaa
      421 agagaaatag aaccaatgcc gcaataggcg tcaatcactg tttcttctcc tgttaactca
      481 gccgcatcga ttgcttgttg atacaaaact tctgtttgga ttgggtttac ttgataaaat
      541 gaacgagccg aaattgcaaa tcgaatacca tgaatcgtat cctcaatgat atcttttccc
      601 caaagtgttt tcgtacgatc tccaaaaatc acatttgttt tatgtgggtt aatattttga
      661 acgatagaag ttagttcaag ttgttcgacc aattcccgta cgatttcttc tttaaatggc
      721 atacgttctt ttgttgttac aaggacaatc attaactgtc cagttgtatg cgcaaatctt
      781 gtcataatat ggcggatatc gccttttcct gtttgttcat catacggttc tgttccgtat
      841 ttagctagga tttcacgtgt tttttgaaca gcaaaatcgc cttgctcatt gtgaattaaa
      901 caagtggaca tatcgataat ggcatggctt cttttttggt aaaaacctgc tgttaactta
      961 ccattaacaa atcctactgg tacttgtgat ttattccggt agcgccacgg gttttccatg
     1021 cctaacgttt ctggaacatc tacattaagt ttcccaattc gcttcatcgt ttcttccact
     1081 tgatttcgct taaacgcaag ctgaccctcg tagcttaagt gttgcaagct acaaccgcca
     1141 catttggaat aaaccgcaca tggaggttct acgcggtctg cactaaccga ttcaatagtc
     1201 tccatccgag caaagccgta atttttattg agctttatta ttttagctgt cactttttcg
     1261 ccaggtaacg tatttggaat gaaaagtggg tatccgtcaa ttttgccaac cccactgccg
     1321 tcatgcgtta aatcttcaat agtaagttca atggattggt tcttttttaa aagggatgct
     1381 tccaaagtcc cttgcccctc tctttgcttt acttaataat atattcgatg ccgattggct
     1441 ctttaattac tgcttcttct tgctctttaa aaacaagcat ggtatttttc tgtaacgtaa
     1501 aatcataaat aaatgttttt ggatagatag tgacattttt attcgtagtc aacgcttttg
     1561 tgttatctgt aatagtcgtt tcttctggaa tctggctatt aaaaatacca gctgcgactt
     1621 cagcatcatc acttgaataa cttgtcttta gagatacttt aatattattg tttgttgtgt
     1681 cttctatttt tacaggtgtt ttttctgttt gtacagaacg ttcaccactt gtaatttcat
     1741 agtttgcgaa ttttttctgg atagttgttg ttgggtaacg atattttgta ttagtaatat
     1801 actcagaaac tttcttcgct tcaatacgaa gtcgatatgc tttgatacct ttataacgat
     1861 tatcggaaga agctaattca tttaaaattt cttcattagt tgtctctaaa atcaaatccc
     1921 catttgttgc tatcgttgtg tttgtatttg ctgcagggat agataaaata atattatctt
     1981 gtattggaat ttgcatttgg ttgtttatcc atactttatt actttcaatt agctctgttt
     2041 tacttacttt tggagcctgt tcttctgcat ccacttgcca aaagaaaaaa acagccgctg
     2101 cgatagcaat gataagaacg attattatca tcgtgaacct tttaaattga tgtccacttg
     2161 tcatatcgca ttcacctcat ttcttgtcag aatacctatt atacttgttt tgctcaaata
     2221 agacaaattt ctaacaataa ttacatcctt tttactatgt tgcaattagg acgtttaggc
     2281 taaagaaaaa aactaccaaa ctgggcagtt tttagctatt ttcttttatg aataaatcag
     2341 ttgcggggat gtcatctaca cttgcgaaaa attcgatatg ttgtcttaaa ttgcggaatt
     2401 ccattggcgt ttccccacca agctccccgt caaggttaat taacatctta tcttctgagt
     2461 taacaatcac tttttcggat tttacataaa taacattagg ttctttaata tgatctcctc
     2521 gaagcgccag tgtgactaaa cggataaatt cggctaaatt tacttttttc acgataataa
     2581 gtgaaaattt accgtcgtct aacttggcat ctggggcgat tttttcaaag ccaccaatgg
     2641 aattagttaa tcctaatagg aaaaacatca cttccccttc aaatacgcct tgatcatatt
     2701 ctacttttac tttggttgct tttaaggatg gtaacatttc gatacctttt aaataataag
     2761 caagttgacc gagcattgtt tttagacggc taggaacatc gtaagtgagt tctgttaaac
     2821 gacctccgcc acctatatta ataaaatatg tttcatttgc tttacctata tccattgcta
     2881 cactttgacc agctgctata atcttcgttg ctttaatcac gtctctaggc acatgtaagg
     2941 ctcttgcaaa atcattggtt gtcccggttg gtataatccc tactttgggg cgatattctt
     3001 tttcagcaat accgttaata acttcattaa tggttccatc tccgccagct gctacaacta
     3061 aatcgaatcg atctcttaca gcttcttccg cagcatgttt ggcatcatct ggttctgcag
     3121 ttgttgcgtg cgcagatgtt acatagcctg cttgctctaa tatcgaaagg acatctgcaa
     3181 gatttttctt gatgatttct cttccagatg tgggattata aataactcga gcgtgttttt
     3241 gcattatgtt cgtcctctcc ttcactcaaa cagcgttgtt caaaagaaaa gcgcgttttg
     3301 acacatgata gtaatattat agcaaattta actataaatt cctaataaat ataaaagcag
     3361 cgaggcaaaa tacctcactg ctacattgtt taacgtttgt tcatttcttc tagtaataat
     3421 ttattaacca ttggtgggtt tgcttgccct ttggttgctt tcattacttg gccaactaag
     3481 aatccaaccg cacgatcctt accatttttg aagtcgacaa tagattgctc attgttatct
     3541 agaatttcgc taatgatagt gcgtaaagct ccttcatcgg aaatttggac aagtcctttg
     3601 tcttttacta cttgctctgc atcgccacca ttttgcgcta attcgcggaa aactttttta
     3661 gcgattttag aagaaatagt accagcttcg attaatttaa tcatgccagc aagattttca
     3721 ggagttagtc ctgtttcatg aagttctttt tgttctgcgt ttaagtaggc agaaacttcg
     3781 cccattagcc agtttgatgc ttgtttcgca tctgctccag ctgcaagagt tgcttcaaaa
     3841 aagtcagaca tttcttttgt aagcgtgaga accattgcat catatgctgg caaaccaaga
     3901 tcgttaatgt aacgaatttg acgtttgtct ggaagttcag gaatttctgc acgaatacgt
     3961 tctttccaag cgtcatcaat aaataaatct actaaatctg gttctgggaa ataacgataa
     4021 tcgtcggatc cttctttaat tcgcatcaaa gaggtttttc cagttgcttc ttcaaaacga
     4081 cgagtttctt gatcgataat cccgccagac ttaagcactt cagcttggcg tttttcttca
     4141 tattcgatac ctttacgtac gttgttgaag gagtttaggt ttttaagttc tgtttttacg
     4201 ccaaattctt cttggccgat tggtcggata gaaatattgg cgtcacagcg cattgaacct
     4261 tcttccattt tcacatcgga tacgccagtg tattgaatga tagattttaa tttttctaag
     4321 taggcataag cttcttctgc agaacgaatg tctggttctg aaacgatttc gataagtggt
     4381 gttccttgac ggttaatatc cactaacgaa taaccatgag aagtatgggt atttttccca
     4441 gcatcttctt ctaaatgaag acgagtgatg ccaatttttt tctttttacc gccaacttcg
     4501 atttcaatcc agccatgttc gccaattggt ttatcgaatt gagaaatttg gtatgctttc
     4561 ggattatctg gataaaaata gtttttacgg tcgaattttg tatgtttagc aatttcacag
     4621 ttaatcgcca tagccgcttt cataccaaat tccactgcac gtttatttaa aactggtaaa
     4681 acacctggca tacctaagtc taccacggtt gtatttgtat ttggttctgc tccaaaatga
     4741 gctggcgcag aagaaaatat ttttgaattg gtttttaact ctacgtgaac ctcaagtcca
     4801 ataactgttt caaaattcat tgctacgcct cctataagtt tggtttttct ttatggaatg
     4861 ttgtttcttg ttcaaaagca tgcgctactt tgtaaagtaa ggattcttca aagtagttac
     4921 cgataatttg caagccaact ggtaaaccat ccgagaatcc acaaggaaca gaaatagctg
     4981 gtacgcctgc taagttaatt ggaacagtca aaatatcatt ggaatacatt gtaattggat
     5041 cattaatcat tccgtcaatt ttaaatgctg ttgtcgggga actaggtccg ataataacat
     5101 catagttttc aaatacatta acaaagtctt gcttaattaa cgtacgcgct tgttgcgctt
     5161 ttttgtagta agcatcgtaa taaccagagc ttaacgcata tgttccaagc ataatacgac
     5221 gttttacttc atcgccaaag ccttcagaac gagtttttgt ataaagttct tctaaagtag
     5281 ttgcgtttgg agaacggtat ccgtaacgaa cgccgtcaaa acgagataga ttagaagaag
     5341 cttcactaga tgctaaaatg taataacttg ctacaccgta ttcagaatga ggtaaagaaa
     5401 cttcatccca agtagcgccc agtttttcga gtgttttaag cgcatctaat acagcttgtt
     5461 ttacgccagg atcaacgcct tcgccaagat attcttttgg aacaccgatg cgtaagcctt
     5521 taatgtctcc tgttaagcta tttgagaagc gttcaactgg ttggttaatc gatgtagaat
     5581 cattcgcatc taaaccagaa atagcttcta ataaataagc gttgtcttct acattttttg
     5641 taattgggcc gatttggtct aaagaagacg caaaggcaat taaaccaaaa cgagatacac
     5701 ggccatatgt aggtttcatt ccgactaccc cacaaaaagc tgctggttgg cgaatcgatc
     5761 caccagtgtc actaccaagc gagaataaaa cttcgcctgc tgcaactgcg gatgcactac
     5821 cacctgaaga accaccagga actcttgata aatcccatgg gttatgtgtt ttgtggaaat
     5881 acgatgtttc tgtcgaagat cccatcgcaa attcatccat gtttaatttt ccgatattaa
     5941 ttgtttgcgc attttttaat ttagaaacga cggtcgcatc ataaattgga tcgaagtttt
     6001 ctaaaatttt acttgctgct gttgtacgta agttttttgt cacgatatta tctttaatcc
     6061 caattggaag accagaaagc atgttgtttg gatctatgcc cgcatctcca agttcttctg
     6121 ctacaccaaa tgctgcctct ttatttaaag taataaaaga accaactttg tcctctacag
     6181 attcaattcg gttgaaagat tctgatacta aatcgaatgg tgaaatctct tttttaacta
     6241 atttatcatg tagttctttt actgaaaaat caaataaacc caaaatattt tccctcctta
     6301 gcctatttat tgttccataa ttgtcggtac tttgaacatg ccatcttgtt catcaggcgc
     6361 attttttagt acttctttgc gatccaaccc ttttgttgcc acatcttcac gtaatacgtt
     6421 tgatacgtcg attgcatggc tggtaggttc tacattcgtt gtatctaatg tatttaattg
     6481 ctctactagc tcaataattt taccaagctg accagcgaag gctgttgctt ctgtttctga
     6541 tacttctagt ttggcaagat ttgctacttt ttctactgtt tcttttgata tatttgacaa
     6601 aatgccatcc tcctttttag tggtacttac tacgcggtag tgcttcccgc ctgttaaaaa
     6661 tgggaagaac tgtcctctcc tgcataatta tacaacagga aagaacaatt cgcattgttt
     6721 tttattaatc gtaaatgtga gcagttgctg catcttcatt tgcttttctt gtaatcaatg
     6781 cagctggacc atcagatgta gaaatattga cttgcaaatc agctgtcttc ggaatatgtt
     6841 gtccgactaa atccgtcaca tactgtgtaa agccgataat ctctgcttca ccataaaatt
     6901 gtaacggaat atcaatgttt aattctgcta gttgaccgtc ttcatatcta ccacgaccaa
     6961 cgacacctgt aaagtttgga taatagtctt caattgcttt tttgaaattc aagaaattgt
     7021 cattatctgt tttgtgatct ttagcagatt cagttgatgg taaaacataa tttttttcat
     7081 ctatatcttt ccaattagaa agactgtccc catttgcagt tgcataagca atgtaatttc
     7141 ctggagctac cgcatcacga gctccttgtt tgtaaatggc aatcgttaca ggaacatttt
     7201 ctaaaccttt tgtttggcga attcgattta acacagtggt agacatttct ttcccttgtg
     7261 ctaataattc actattacta attggttgtt cataggtgtc tccgtatttt tctttttggt
     7321 aataatcgac cgaattcatc gcaagggcaa tagaaatccc accaagagca accgtatctt
     7381 tgtccgtttg ttttaaataa tcttgttcta aaatatgtgc tagatagatt ggattacgat
     7441 tctcaccgtt accattactg gctgggttta aaccattcgg atttttatcg ctttttctat
     7501 ctaaccattt ttctaacgtt tctttatcca aatattgccc ttcttggaaa agataattat
     7561 ctggggagta tttattttgc gaaacacgca ttaaaccaga ttctaattcg ttaatatcat
     7621 atcgtgaata aatattcgat acgacaagtc cacgggattt gcttgctttg tatggtagta
     7681 cggttttgta ataattggat gagatttgat tttttgtcat gatgcccgtc tctgcttttg
     7741 aatcatcttt ttgtaccact ttatcatttg agtcaagttt tggggcacag ccagagagca
     7801 caagcgttaa gccgagcgct gctattatga tttttttcat tcgtttaatc caccttcgtc
     7861 tggtaagtac tctattaagt cttcttctga ccaaatagga atggctagtt cttccgcttt
     7921 ggctaattta gaaccagcat cactgccagc tacaacaaca tccgttttct tactgacgct
     7981 tccagaaaca tttcctccga gggattcgat taatgctttt gcatcattcc gcgttaactt
     8041 ttctagtttc ccagttaaga caacggtttt acctgcgaaa acaagttctt cctcggacat
     8101 atcttctagt tttggccctg tataggtcat attgacgcca gcccttttta gttcttctaa
     8161 taaatcatgt acttcttcat tcgcgaaata agtgacaata ctgtctgcca ttttttcacc
     8221 aatgtcgtta atacttgtca gtgtttcttt gtctgctact ttcaaattat ccattgtatc
     8281 gaaatgaatg gcaagtgatt tggcggcttt tgcaccaaca tggcgaatgc ctaagccgaa
     8341 aagtaatttt tcaagcgagt tttgtttact tgcttggatg gatgccagta aattagttac
     8401 cgatttctca cccattcttt ctaattctaa cagtttctcc ttcgaaagga aaaacaaatc
     8461 tgctacatct ttaattaaat gctgtgaaaa tagctggata attacttttt cgccgaggcc
     8521 atcaatgttc atcgcatttc tggagacaaa gtggataagt ccttctttta tttgagctgg
     8581 gcatttagga ttaatacatc ttaacgccac ttcttcttct aaccgaacca attcactatc
     8641 gcacgctgga caattttttg gcatatggaa aggttcttca cttccgctac gtttttcggt
     8701 gatgctttta atgacttctg gaatgatatc gccagctttt ttgattaaaa cggtgtcgcc
     8761 aatgcggata tctttctctg taattaggtc ttcattatga agcgaagcgc ggctaacggt
     8821 tgtccctgcc actcgcactg gttctaacac ggcggtggga gttatcacac cagttctacc
     8881 aacatttaat tcgatatcga gtaacttagt tggtacttct tcggctggga atttataagc
     8941 aatcgaccaa cgaggcgatt taacggtgtt tcccatttgg cgttgttgct ctaagttgtt
     9001 taattttaaa acaatgccgt caatatcgta tgctaatccg gcgcgttttt ctgtccattc
     9061 ttcaatgtac gcataaactt cttctaaact gttgcaaagt cggcgttctt tattgacttt
     9121 aagaccaagt gtttcaagca tatctaagcc tgcgctatga gtttcaacgc ccatttcacc
     9181 aaaatctgct actgcataaa ggaagatatc gagatttctc gacgctgcga tttttgtgtc
     9241 caattgtcga agcgagccag ccgcagcatt tcgtggattg gcaaataaca tctggccttc
     9301 ttcttcgcga atttcattta gtttttggaa ggagcgtttt ggcatgaaag cttcaccgcg
     9361 aacttcaatg gaatagtcct tttgaagttt cattgggatg gagcgaatcg tacgcaagtt
     9421 agcagtaatg tcttccccaa tggttccatc accacgagta gcaccttgtt tgtatttacc
     9481 attttcgtat tgaagggata ctgctagtcc gtcaatttta agttcgcaca tataagcaat
     9541 atcatcgccc actttgtcgc gaattcggcg gtcaaagtct gccaagtctt cttggttaaa
     9601 agcgttggca agacttaaca tcggcgtgtc atgtgctact tttttaaaac cttctaaaac
     9661 ttccccgcca actcgttttg acggagactc aggtgtaacc cactcgggat gcgcttcttc
     9721 tattttaagt aattcttgca tcttctgatc gtattcggca tcttctactg ttggattatc
     9781 aattacataa taatcatagc tgtactgatc aagtatgttg attagttcct catacctttt
     9841 tttatcagcc atcattcttc acctgctttt tccaaattta tactttttca attggcgcaa
     9901 attctgcgag caatcgtttg acgccagttg ggcttgggaa tgcaatatct agttccattc
     9961 cgctaccttc ccctttgaca ctgacgactg ttcctacgcc ccatttttta tgactggctt
    10021 tatcgccgac tgtccaacca agcgtttctg ctccagagga tttatacgca gtagttgttt
    10081 tttgtggcat acgcggtttg gcatatggtt tgtctgcttt taatttgttt tcattaccta
    10141 actcaagtaa gtctcgaggt atttctccaa taaaacgaga ttcctgatta gaggacggac
    10201 gaccataaag catccgtgag taagcgctcg ttaggaaaag ttcttcttcc gctcgagtaa
    10261 taccaacgta agcaagtcga cgctcttctt ccatttcatc ttcctcataa atggctctag
    10321 aatgtgggaa aatcccttct tccatcccaa ccaaaaagac aactgggaat tctagccctt
    10381 tggcagagtg aagtgtcatc agtgtgacag ccccgttttg ttcttcattg tcttcttcta
    10441 acttatcgac gtcagcaacg agtgctaaat cagttaaaaa ggcaattaac gttttatcgt
    10501 cattttcctt ttcaaagttt tgtgttacag ataaaaactc gtcgatattt tctaaacgtg
    10561 tttgcgcttc aatggttcgt tcatttttta gcattgcgcg gtagcctgtt ttttcaagga
    10621 tttcttctac gagttcggtt acggataaga aatcttgcat ttgcgtgaag ccgcgaatca
    10681 aatcatgaaa cgcaactaag tctttgctta ttttaggcga aattcccgct agttcgatgc
    10741 ggttaaggac ttcaaacaag ctcaaatcat acgtggtcgc cacattattt agtttatcta
    10801 aagtacctgg tccaacgccg cgttttggaa cgttaacgat acgtgtcaaa ctaatatcat
    10861 cttcattatt actaataaga cgtaaatacg ccaaaatgtc tttaatttct tttctgtcat
    10921 agaacttcgt gccgccgacc atcgtgtacg ccatattcga cttcatgaaa tattcttcca
    10981 tgacacggga ctgggcgtta gttctataaa gaatcgcaaa gtcagaaagt ggtcgattcg
    11041 agttatttac ttcttcttga attttcataa ctacataggc tgcttcttct ttttccgtta
    11101 atgctttatg ataaaaaatc tttttccctt ctgcgttact tgtccaaaga tttttcggtt
    11161 tacgattacc attattttcg ataacacggt ttgccgcttc taaaatacgt tttgtcgaac
    11221 ggtaattttc ttctagcaaa atggttttcg cattggggta atctttttcg aaggacatga
    11281 tgttactaat gtccgccccg cgccaaccat aaatagattg atccgagtca cctacgacgc
    11341 ataagttttt gaaacgagaa gcaagctgtt tcacgagtaa atactgcgcg tggttggtat
    11401 cttggtactc atccacgtga atatactgaa atttacgttg ataatattct aaaacatcgg
    11461 gcacacgttc aaataattga atggtgacca taattaaatc atcaaaatcg agtgcttgat
    11521 ttttcttaag tttcttctcg tatttttcgt agacttcgcc gaccattttg tcatagaaac
    11581 cacttgcttc tttaatatat tcgcttgcag ttatcagttc atttttggca ttgctaatag
    11641 aagccaaaat cccccgtggc tcaaacttct tagggtcgac attcttttct ttcaaaatgc
    11701 ctttaataac cgataattgg tcactgccat ctaaaatagt aaaattacgt tcatagccaa
    11761 tccggtcaat atcgcgacgt aaaattcgta cgcacatcga gtgaaaagta gatatccaaa
    11821 tagattctgc ttctccgccc attaaattgc caatccgtga cttcatctcg cgagccgctt
    11881 tgttcgtaaa cgtaatcgct aaaatattat aaggatttac accacgttct ctcactaaat
    11941 aagctatccg atgggtcaaa actcgtgttt tcccacttcc ggcaccagcc ataattaata
    12001 aaggtccttc tgtactttct actgctcttc gttgttccgg attcaatccg tccactaatt
    12061 cttttgcatt caattgcatt ctcctataca ccaccataca aacatttgtt cttattttat
    12121 catactacac tttataatca aaccgttttc ttcctaaaaa tagttgcggt ttctagtgct
    12181 ttttctaaat cttcataaat aatattgcca acaataatcg tatccgcata ttttaccatt
    12241 tcagcagctt gttcttttga acgtattccg cccccatacc aaaattttgt attacttaat
    12301 gcggcgcttg cttttcttac aacctctgga tctccgtaca tgccgctata ttcgacataa
    12361 aaaatgggca gatgaaatat attctctgct aaccgcgcat aggcaacgat gtcttcgtcc
    12421 gttaaatcgg tcttcgcttc tgttaaatga gccacttttg catctttatt taaaataacg
    12481 tagccttctg ctgtgactcg tttccaagga ataaatgctc ccatttcttt gattaactcc
    12541 tggtgtaaac cgtgtgtcca tttactattt tctgtattca acactactgg aattaaaaaa
    12601 tggtctgctt caggtaaaat catggattcg ttgcttattt caaggaaaat cggcaagtcc
    12661 gtttcaccta ataattcgta gagcttttgg actgcttcga tttgtacatt atccgtccca
    12721 ccaataataa atccattggt tccagaatgg acgagcttcg ttagatcatt cattggtaaa
    12781 ttctttgctg ggtctaactt gaataaatgc ttcatttgct cctccaagtc tctataatgg
    12841 gatatcttat tatagcatta gttacatttc atcgcaccct tacgaccaaa aattttaact
    12901 ttttttaagc tttttttacc agttgctgtt gggatagctt ttattttatg gtatgatgag
    12961 gaaaatttga ttttattaag acttctgagt atttacatag aaaaaaggaa atggggatat
    13021 tatgcaagaa aacagagaag aatggggctc aaaagtcggg tttatattag catccgctgg
    13081 gtccgcaata ggaattggtg cgatttggaa actgccttat gtggctgcaa ctgcaggagg
    13141 tggcgcattt ttcttattgt ttttagtttt aactttactc gttgtgatgc cacttttaat
    13201 tgcagaattt gtgattggac gaggctctgg cggagatgct gttcaagctt ataaaacact
    13261 cgcgcccgga acaaagtgga atttacttgg aaaattaggc gttgtaggcg caagtatttt
    13321 attttcgttt tatagcgtag ttggtggttg gattatcact tacttaatta aaacacttgc
    13381 tggcgggatt gctggcgaaa atcaagcaag tctgctgcat gatttccaag tgacgacagc
    13441 taacccgtgg atatcagttg gcgcaacgat tctctttatt ttactaaatg tcattgttat
    13501 tagccgcgga gttgttagtg gaattgaaaa aatgagtaag tttatgatgc cagctctatt
    13561 tattttattt attgttttaa ttatcaggtc cttaacacta cctggtgcga tggaaggtgt
    13621 cgcatttttc ttacgtccag attttagtca tttcacagcg caaacggttc ttataacgct
    13681 tggtcaggcc ttcttctcac tcagtgtggg gatttcagta atggtgacct atagttctta
    13741 tttaaatcgg tcgactagtt taccgcagtc tgccatttcg gtttcgctta tgaatgtgtt
    13801 tgtgtcgctt cttgcgggat tggccatttt cccggcagca ttttcgttta atattacacc
    13861 agatgcggga cctggattgc tattcgttat tttaccttcg attttcaatc aaatgccctt
    13921 tgggatgttg ttctttatta ttttcttgat tttattctta ttcgccgcat taacctctag
    13981 tttctcgatg cttgaagcaa cggttgcgcc actgatgaat gcgggtgtta atcgtaaaaa
    14041 agcaagtctt tggatggggc tcgtgattgt cttgatggct attccaagtg cgcttagttt
    14101 tggcgtttgg agcgatgttc agattttcgg actaagtatt tttgatgctg ccgattatct
    14161 tgtgtcgaat attgtcttgc cagttggtgc tttatttatc gcaattttcg ttggttaccg
    14221 attacctcgt gaattacttt taaaagaatt taccacaagc agccattttg gaaaaaaagt
    14281 gtttattctt tggctctttc ttattaaata tattgcacca atcgcgatta ttttcgtctt
    14341 cctctccgca actggtttaa tcgattttct gttttaacaa aaaaagcaat ccgctaagtt
    14401 tttagcgaga ttgcttttct tatattgcca taaggacaat gcttgttaca caaatcaaga
    14461 ttccactaag gccaatcgcc gtaccaattg ctcgtttttc tctaacatta gcaagtgtcg
    14521 tgaaaataaa acaaataata aagacccagt gccacagtaa agaaaaatca agccccgtgc
    14581 cagtggcaat catattaatc acaaaataaa taactgcaag cgcaagaata gagatgatga
    14641 caatctgata ggttttacta ttaaactttt tcaatataat ccctacaatc ttattctggc
    14701 ttcgtcattc ttgaaaatac tacatcatac atatcattac cataatgaag tgaacgtttt
    14761 acacgtgaaa tagttgctgt acttgcccca gtttcagatt caatcacatt atatgttttt
    14821 ccatcatgaa gcatttttgc tacttggaaa cgttgagcca tggactgtat ttcattcact
    14881 gtacaaacat catcaaaaaa agcataacat tcttctaaat tctcgagcgt taaaatccct
    14941 tggaagaatt catccaatcc ttgtccacgc aacttctcta tttgcatatc tttacctcca
    15001 aataatctca tatatcctac tttcatattt taacgtacca acgcgtaaaa cacaaacgtt
    15061 tctcttcact taatgaacaa aaaaagtact atctaggaat ttatccttga gatagtactt
    15121 ttcaattatt ctgcttttgt gccaatatca attcgataaa agaaattcgg gttatctagt
    15181 ttttgcattt ctggataaag taatgtgcgt gcatcagtca tcgtttctgc ttcttttgct
    15241 agtagcaaga cgcgtccacc atcagaaata aaatcgtcat tttcatcttg ttttgtacct
    15301 gcatgataaa tcgctacatc ttctgcaaca tcatttagac cagttaattt gtttcctttt
    15361 tcataatgct ctggataacc ggcgcttgct aggacaactc ctagcgtaat ccctgatttt
    15421 ttaaagcgca catctggttt ttcgttatgg agtaaagcgt ctatcagtgc tgcaaaatca
    15481 ctctctaaac gaggcaaaac aacttgtgtt tccggatcac caaagcgtgc gttaaactca
    15541 attacttttg ggccttctgc ggttaagata agcccagcat agagaattcc gcggaaataa
    15601 cgaccttctt ttaccattcc ttttgcagct ggaagaagaa ttttttcgac agcttcgtct
    15661 actactgttt cagaaatatg tggtaccgga gaataagctc ccattccgcc agtatttggt
    15721 cctttatcgc cttcataagc gcgtttatga tcttgcgcga tagccattgg ataaacttct
    15781 tccccattta caaacgccat caatgaaaac tcttctcccg ctaaaaagtc ctcgataacg
    15841 accttgagag atgcgtcacc gaatttttct tctagcatca tatcttttaa tgcaagaact
    15901 gcttcttcca tttctaacgc tacagtgact ccttttccag cagcgagtcc atctgcttta
    15961 atgacgattg gcacaccgcg ctcatccaag tatgctttcg cttccgcata atcggtgaag
    16021 gtttttgatg ctgcggttgg aatagcatat ttctccataa attgtttcgc aaaatctttg
    16081 ctgccttcaa ttaatgctgc atttgctttt ggaccgaatg ctttaattcc agcttcttcg
    16141 agagcatcga caacgccttc taaaagaggc acttcaggcc caacaataac aaaagcaatt
    16201 tctgcttttt tagcaaaatc aattaaacca gctttatccg tttcagaaat agctacgagt
    16261 tggatgttgt ctaaacgcat tccgtcgttt cccggagcac agtatacatt ttcgacattg
    16321 ttggattcta ataatttttt actaatagca tgttctctac caccgctacc aactactaat
    16381 aagttcattt atttacacgt cctttttgag gattaatgtt tgaagtgtcg tacatgagtt
    16441 agaaccatgg aaataccata tttgtttgcc atctcaatgg attccttgtc tttaatggat
    16501 ccaccaggct gaataatcgc tgtgattccc gcttttgccg cagcttcgac cgtatcatcc
    16561 attggaaaaa aggcatccga ggcaagtaca gcaccttttg ctttctcgcc agcttgctta
    16621 agtgcaatta acgcggaacc gattcgattc atttgtcctg caccaattcc aagtgtttgt
    16681 ttatcagatc ctactactat cgcattggat tttacatgtt tcacaatttt ccactgagca
    16741 attaatgctt tcatttccgc ttctgtaggt tgtttttccg ttactacttc ataactcgct
    16801 gtatcttcta taacagaatc gctcgcttga ataagaagtc caccatttac agatgttttc
    16861 tcgaaacctt ttacggaacc ggcaaacgga acagttaaca agcgaatatt tttctttttc
    16921 gctaaaatgg caaacgcttc ttcagagaaa cttggcgcaa taataatttc taagaaaatt
    16981 ttgctcatat gttcggctgt tttcgcatcc acttctttat ttaaggcaac aatccctcca
    17041 aaaatagacg tttcatccgc ttcataagct ttcaaataag cttcttcaat attttctcca
    17101 acaccaacgc cgcatggatt catatgtttt actgcaaccg cgaccggctc tgtaaattca
    17161 cttgcaattt taagtgctgc atctgcatcc cgaatattgt tgtaagataa ctctttaccg
    17221 tgcaactgtt tcgcggaact aattgaattt tctaccgtgc caggttctgt ataaaaagcg
    17281 gcatcttggt gaggattttc accataacgc aaaacttgtt ttcgattgta agttaatgtt
    17341 actttttctg ggaaagtttc tccagtgatg ttcgttaagt attctgcaat taaagcatca
    17401 taggccgctg tgtgccgaaa aactttcgca gctagacgtt ggcgcgtttc aaaagtagtt
    17461 gcgccgtgtt cttctagttc tgtaagtacc gtatcgtaat ccgctgtatc aactacaaca
    17521 gttaccgctg cataattttt cgcagctgag cgtaacatcg aaggtccgcc aatatcaata
    17581 ttttcaatcg cttcttctaa agtaacacca gatttttgaa tcgtttcttg gaaaggatat
    17641 aaatttacaa cgactaaatc aattggcttg atatcgtgtg ccgcaatagc ttccatatgt
    17701 tcagctgtat cgcgtcttgc cagtaaccca ccatgaattg ctggatgaag tgttttaacg
    17761 cgaccatcaa gcatttctgg aaattcagtt acttcttcta ttcctgttac cggtacgcca
    17821 gcttgttcaa atgccgcttt tgttccacct gtcgaaataa tttctactcc aagttctact
    17881 aatttttctg caaatggcac gatgccgttt ttatctgaca cactaataag cgctcttttc
    17941 atgataatta atcgttccct ccattttgaa ttaatcctcg aatcactttt ggataaaaaa
    18001 tatgttctac ttgatgaatt tttccagcta aagtatctac agtttccgca tgttcaatcg
    18061 gtactttcac ttgatcaata attggtccag tatccattcc cgcatccaca aagtgcgcgg
    18121 tgacaccagt ttctgaaaca ttcgcttgaa ttgcttgacc aattgcatct tttcctttga
    18181 attcaggtaa caacgatggg tgcaggttga caatttgctc gggaaattct gctaataaag
    18241 tcggcccaat caaacgcata tatcctgcta gcactaacaa atcaatttcc aacccgcgaa
    18301 gttctagtaa aatttctgtc tcaaaagctt ctttatccgg ataatttttc gcttcaaaaa
    18361 ggaacaccgg aatctgatgt gtgtttgcgc gttctaaaac ataagcattt ggtttatcac
    18421 ataccagtag tttcacatga ggcttaataa acgcatcatc cactaaagct tgaaaattcg
    18481 aaccgttacc cgaagcaaaa atggctatat tcatcctttt gtgcctcctg tgaaaataac
    18541 cgcatcattt tcacgtgtcg taacttctcc aataacataa gccgcttccc cgttttgaac
    18601 gagtacttct aatgttcttt ccacatccgc tttcgcaact gccaacacca taccaatgcc
    18661 catattgaaa atttcataca tttcaagttc gctcaattgg ccgtatttct tcataacgtc
    18721 aaaaatcggc aacaccggcc atgaacctag ctccactttg acagctaaat catttgttaa
    18781 catccgcggt aaattctcta caaatccgcc acccgtcaca tgcgtaattc cgtgcacatc
    18841 tacctctttc aatacttcta aaactggctt cacataaatc cgtgtcggtt taagtagctc
    18901 ttccacaagc ggtacatcta gttcactgat ttccgcatcg agtgtcaatt cgttatcttt
    18961 aaagaaaatt ttacgcacaa gggagtaacc attactatga attccgcttg atggaatacc
    19021 aatgagtgta tctccttctt tgactgcgcc ttctgtaatt agcttctgtt tctctacagc
    19081 cccaacagta aaaccagcta aatcataatc ttccgcgccg tacatatcag gcatttcagc
    19141 agtttcgccg ccaattaaag ccgcaccagc ttgttcacag ccgtcagcca cgcctttaac
    19201 aatttgttcc attttcactg gatctgtttt tccagtagcg atataatcta agaaaaataa
    19261 tggctcggcg ccttgagcta aaatgtcatt cacacacatt gccacgcagt caatcccgat
    19321 ggtatcatgc ttatctgctt caattgccaa aagtaatttt gtcccaacac catccgtacc
    19381 agaaacaagg acaggttctt ttaaatgcaa actacttaag tcaaacattc caccaaatga
    19441 accaagtgcc cccatcgcgc ctaatcgctc tgttctagcc acatgttttt tgatacgttc
    19501 tacaacttga tagccagctt ctacgtccac gcctgcttta ctatatgcat tttctgccat
    19561 tcgatttgtc actcctcatt atttttctgc ttctaagctc gctaaatatt ccgcttcata
    19621 atcatataaa ggggttgggt aatcgccgtt gaaataagcc atacaaagtc ccccgtaagg
    19681 ttcgttcgga taaggtctgc caatggaatc tactaaacct tcttcactca aatactctaa
    19741 agaatcagcc ccaataatcc gacaaatttc atcaacagaa taattagaag cgattaattc
    19801 atttcgcgtt tggatatcaa ttccataaaa acaaggataa gcaagtggtg gagaagcgat
    19861 tcttacatga acttccgccg ctcctgcttc acgtaaaagc tggacaatgc gtttacttgt
    19921 cgtcccgcga acaatcgaat catcaatcat gacaacgcgt tttccttcca caaccccgcg
    19981 cacggcagaa agtttcattc taacgccttg ttccctaagt tcttgtgatg gctggataaa
    20041 agttcttgcc acatatctat ttttgatgag accaagttcg taaggaagac cagcttcctc
    20101 cgcataacca atcgctgcag aaatactgga atctggtaca cctgtaacca catctgcatc
    20161 aataaaagcc tcttttgcta atcttttccc agaacgtttt cttgccgagt ggacattaat
    20221 tccagcaata ttagagtcag gtcgcgcaaa ataaatgtat tccatactgc aaatcgaatg
    20281 cgtcacattt tccgtgaatt tttcaattcg aagcccgtca tcattaataa taattagttc
    20341 acctggctcc acatcgcgga caaactcagc gccaaccgtt tcaaaggcac atgtttccga
    20401 agcaactacg taagaatcac caatgcgacc tatcgaaagc ggtctaaaac cattcgggtc
    20461 aagcgccgca tacatcgtgt cttccgtcag aagcatgtac gcaaagccac ccttaacctt
    20521 gttcaaagcc acttttaaat cttccacaaa atcacctgta tggctacgtt taattaaatg
    20581 cgctaacact tctgtatccg aactcgtttg aaaaatagcg ccttcttctt ctagttcacg
    20641 gcgtaaactt ttcgcattaa ccaaatttcc attatgcgca agtgctaaag aagaactatg
    20701 aaagtgaaat aaaaatggtt gtacgttccc taagtttttt tgaccagctg tcgcatatcg
    20761 aacgtggcca atggctgctt taccttttaa atcgtctagt tcaccatgtt taaatacgtc
    20821 tgctaaaagg ccgagatttc ggtgaccttt tagtgtttca ccgtctgtcg aaacaattcc
    20881 ggcaccttct tgaccgcgat gttgtaaact atgcaaccca taataggtga tttccgctgc
    20941 attaggatga tcccaaatac caaaaatacc acattcttcg ttaagtcctt ttacttcagc
    21001 aagcatggaa tagccccttc ccaaatggat cgtaattccg ttgttttcgc tgtaacttga
    21061 ttttccttat gtttcacacg aatcgtatca tcctcggtta ctacaccaag gcggtatact
    21121 ttttccagtt ccattaattg cgcaaaagct gcttcgtttt ccggttttac cgatactaag
    21181 aaacgtgatt gcgattcact gaatagttga ttcaactcaa acggtacttc tacatccgca
    21241 ccaagccctg ctttaaaagt cgcttccgca agggcaacac caaatccacc ttctgccaaa
    21301 tcgtgactag aagcaactag accttcctga atcgccgtta gaagtaattg ttggtatttt
    21361 ttctctgtcg ttaaatctaa ttccggcgca cgtccgctaa ttttcccttg ttgcaatttt
    21421 tgcaattccg aaccactata ttcagctttt gtttcaccaa ttaagaaaat cacatcgcca
    21481 ctatttttaa aatcttgtgt cgtaatatgt gccaaatctt ctactaaacc aaccattcca
    21541 atgactggcg ttggataaat tccggtacca tctgtttcat tataaagcga tacattacca
    21601 gagataacag gcgtatcaag ttctaaacaa gccgcactaa taccatcagc cgctttttca
    21661 atttcccaaa aaatttctgg tttttcagga tttccaaagt tcagtccatc tgtaatcgct
    21721 agtggtttcc cgccagaaca aacgatattg cgcgccgctt ccgcaaccgc tatcgctccg
    21781 cctacttctg gatcaagata caaatagcgt gagttacaat cagttgtcat ggcaattgcc
    21841 ttctcggtcc cacgcacacg aacaatcgcc gcatctgaac caggtacaac agctgtatcc
    21901 gtccgaactt gataatcata ttgctcataa atatggcgct tactagcaat cgttggctga
    21961 gcaagcagtt ccttccaaac accgaccaca tcttccataa ctggcacaaa cgattcctct
    22021 tcttggaaag cttgataacg agctggctct ttggaaggtt tatgataaac tggcgcatct
    22081 tctgcaagcg catctacagg aacgttcgca actacttcac catgatgaat aattttgtac
    22141 attttatcat ctgttacttg accaatcaca acagcctcta aaccataacg ttcaaataac
    22201 gcttggattt cttccacatg cccttttttc acacatagaa gcatccgttc ttgcgattca
    22261 gaaagcaaca tttcataagg cgtcatattt agttctcgtt gcggcacatc atccataatt
    22321 aattctagcc cagcgcccgc ttttgaggcc atttcagaac ttgaactaac gagacctgca
    22381 gcccccatat cttgaattcc cactaaaata tctgaatgat cacgaatcac atctaaacat
    22441 gcttcaagca acaatttctc cataaaagga tcgccaacct gtacagcaga gcgttgttgt
    22501 tcgccttctt cactaaactc tacagaagca aaagtagcac catgaatccc gtcacgacca
    22561 gttttagcgc caacatacat caccggatta ccaattcctt ttgcttgccc tttttgaata
    22621 tctttcgcct cgattaaacc aacacacatt gcattaacta gcggattttt tgtataacaa
    22681 ggatcaaatt ggatttcgcc accaaccgtt ggaatcccaa tggagttacc gtatcctgcg
    22741 attcccgcaa cgacttcact aactaagtat ttcgcatggg gtgtatctaa ctcaccaaaa
    22801 cgaagcgagt taagcattgc aatcggtcta gctcccatcg agaacacatc acggataatc
    22861 ccgccgaccc cagtcgcagc cccttgatac ggctccacgt aggatggatg attatgactc
    22921 tccactttaa aagcaacacc taaaccatcg ccaatatcga caatcccagc gccttcacca
    22981 ggtccttgta atacttgttt gccttctgta ggaaatttcc gaagtactgg tttagaattt
    23041 ttatagctac aatgttccga ccacataaca gagaaaagcc cagtttctgt ataattaggc
    23101 tcgcgtccaa gaatcgaaca aacaagctca tattcactat cagttaagcc catttcttga
    23161 taaatctttt gttctttaat ttcttttgtc gttggctcca tgttaggcat ttacttgttc
    23221 ctccttccaa gcttttacaa cggactcgaa aagtcttaaa ccatctgtac cgccaataat
    23281 ttcttctacc gcgcgttctg ggtgtggcat cattccaagc acattaccgc gctcatttac
    23341 gatccccgca atatccgcac ggctaccatt cggattcacg ctatcatatg taaacacaat
    23401 ttggttatta tcttttaatt ttaaaagtgt ttcatcgtca cagtaataat taccttcccc
    23461 gtgagcaact ggaacttgga taatttcgcc ttctttataa agcccggtaa acatcgtact
    23521 tgcattcgcc acacgaagcg gcaccgtctt acaaataaaa tgcaaattat tgtttctaat
    23581 taaagcacct ggcagtaaac caatttcagt taaaatttgg aatccgttac acacaccaag
    23641 cactggtttt cccatttcag caaagcgtaa aacttctggc ataatacttg aaaatttcgc
    23701 aatcgcacca gttcgcaagt aatctccgta agaaaatcca cctggaagta aaaccgcgtc
    23761 aaagcctgca agacttgttt ccgcatgcca tacatattcc gcctcctcgc caagagaatc
    23821 gcgaatcgca tgtagcatat caagatcaca attagaacct gggaactgaa tgacagcaaa
    23881 tttcatcgtt taagcctcct ctatttcata tcggtaatct tccatcaccg gatttgttag
    23941 cagtttgtcg cacatttcat tcaatacttc atgaatatct cgatctgatt tcacaacttt
    24001 tagttccata aatttaccaa tacgaacatc ttctacttcc tcataaccca tgcttttcgc
    24061 tgcatctttt actgcaacac cttgtggatc taatacgctt ttctttaaag tgacataaac
    24121 tttgacatta tacattttgt ggcctcctag ttttgaactt gctttaatct attcaatact
    24181 tctgtataca catctgttaa attgccaata ttccgacgaa agacatcctt atcgagcttt
    24241 tgatttgttt ccttgtccca aagtctacat gtatcaggcg aaatctcatc tgctagtaaa
    24301 atattcccag tcgcatcccg accaaattct aatttaaaat caattagcgt aatattcatt
    24361 tgattgaata attcttgtaa caccttatta atcgaacgag cagcctggcg aattatatcc
    24421 atctcactcg ttgtcgcaag ctctaaataa agcacatggt catcattaat aaacgggtca
    24481 tctaacgcat catctttata gtaaaattct actatcgcat ttggaattag ctcgccttct
    24541 tcttttccaa gccgtttcgc aagactccca gccatcacat tgcgaacaac cacttcaagt
    24601 ggaataattg atacttcttt caccaattgc tccgtttccg aaatcgctcg aataaaatga
    24661 ctctctattc ccgctcctgc taaatgagaa aaaataagcg atgtaatttg gttattaagc
    24721 tcacccttcc cagcaaaaga ttcctttcgc accccgttta gcgctgtcgc atcatcctta
    24781 taggcaacac gcaagacacc tgcttcttct gttttaaaaa gtcgttttgc ctttccttca
    24841 taaaccagtt cattagtcac gataatttat ctccttataa attacttaac ctctttgaaa
    24901 aaataaatat caaagaggtt aggttgtatt ctgcccgtaa ttataatcct aaacgatcaa
    24961 aaattaagtc gacattcttc aggtgatagt tgtaatcaaa gcaatctgca atttcttccg
    25021 cagataggtt ttcaataatg gttgcatctt gttctactaa ttcacggaaa ggtacttgtt
    25081 tttcccaagc ttccattgct cttggttgta cgacatcata cgccgcctca cgagctaaac
    25141 ctttatcaat aagtgccagt aatacacgct gtgaataaat aagtcccagt gttctgtcca
    25201 tattgcgttt catattttct gggaacaccg tcaagttttt cacgatattt ccaaaacgat
    25261 tcaaaatata atcaagtaaa atagtggaat ctggcagaat aattcgttcc gctgagctat
    25321 gagaaatatc acgttcatgc caaagtggca cattttcata agcagtaacc atatgaccgc
    25381 gaataacgcg cgctaatcca gttacatttt ccgaaccaat tggattacgt ttatgcggca
    25441 ttgcagatga acctttttgt ccttttgcaa agaattcttc cacttcacgc acttcacttt
    25501 tttgcagtgc acgtacttct accgcaaatt tttctacaga agttgcaatt aatgcaagtg
    25561 ttgccaaata ttctgcatgg cgatcgcgtt gcaacgtttg tgtagaaatc ggcgcaggag
    25621 ttgttcctaa tttttcacat acgtaagcct ccacaaaagg atcaatattc gcatacgtcc
    25681 cgaccgcacc agagattttc ccgaattcca caccatcagc tgcaaaatta aaacgttcta
    25741 ggttacgttt catttcctcg taccatagag caagcttcaa gccaaaagta gtaggttccg
    25801 cgtgaacacc atgtgtacgt cccattgtta cggtatattt atgttctttt gctttttcgc
    25861 caataatcgc aatgaaattt tccaaatcct tacgcaaaat ctcattcgct tgtttaagta
    25921 aataagaatt cgctgtatcc actacgtctg ttgaagttaa gccataatga acccatttac
    25981 gttccgcacc aagcgactca gaaactgaac gagtaaatgc cacaacatca tgtctcgttt
    26041 ctagttcaat ctcatgaatc cgatccacat caaactttgc attagcacgg atcttcgcaa
    26101 catcttcttt cggaatatca ccaagctctg cccatgcttc acaagccaaa atctccactt
    26161 ctagccaagc ctgataacga ttttgttctg tccaaatgtt gcccatttct ttacgagtat
    26221 aacgttctaa catcctttta aattcctcca gttacttcca aatttgcgtt tcttctaaat
    26281 cttgtataac cgcttttggt tcatcagcaa gcacagtaac atgacccatt ttgcgattga
    26341 ttttcgcttc tttttttcca taataatgta caaaccaatg tggataattc accatttgtt
    26401 tattcactgc atcgacatgt tgccctaaaa tattaatcat taaggctggt tttaagagtt
    26461 ctggttttac aagtggcaat ccaacaatcg ctcgaatatg ctgcgtaaac tgagaaatag
    26521 aacaagcttc aattgtaaaa tgcccagaat tatgaggtct tggagcaagt tcatttacat
    26581 aaatagcccc tgattttgtc acaaacattt ctactgctaa aacaccacat aattgaagta
    26641 catctgctaa ctttctcgca atttcttccg cttcctcatg cacgtcatcc gccacatctg
    26701 caggagccgt agttgtatgc aaaatattat ttacatgtac attttctgca actggaaaag
    26761 tttctatttg cccttctaaa ttacgagcga caaccacaga aatctctttt tcaaaaggaa
    26821 tccaagcttc tagtacacaa gagccgtatc gcaacaatct cgctgctgtt tcaatatccc
    26881 ttgcatcatg aataaccact tgccctttcc cgtcgtatcc accttgtgcc gtttttaaaa
    26941 cagcaggata tccaatactt ttaatttcat tttcaatttc atcttgttcc actataaccg
    27001 catacggcgc aatgttaata ttagctgatt ccagataagc tttttccaaa atcctatcct
    27061 gtgtaatcga aagcaattcc gatccttgcg ggacagatac taagttttgc gtcattttca
    27121 aagcatcata gtcgatattt tcaaattcat atgtaactac atctgctttt tcggaaagtt
    27181 cgcgtaatgc tactttatca tcatagtcag caataatttg ttcatcactt acttgagcag
    27241 ctgggcaatc agcggtagga tcaagaacaa taatacgata ccccatcgct ttcgccgcaa
    27301 gagcaagcat acgtccaagt tgtccgccac caataatacc aatagtacta tttgtcagta
    27361 aaaatttttt atccaagata atcactactt tctagaactg tttcttctag tgtagcacgt
    27421 cttttttgta atctgttagt aattgcatcg tccgttatgg ataaaatttg cgccgctaga
    27481 aggccagcat ttacagcacc actttctcca atagcaactg tcgctaccgg aacacctcca
    27541 ggcatctgta caatagaaag taacgaatcc attccattca acgcttttga tttaattggc
    27601 acaccaataa caggcaaagt cgtctttgcc gcaatcatac ctggcaaatg cgccgcgccc
    27661 ccagcaccgg caataataat tttcaaacca cgttcccgcg cttgttctgc atattgaaac
    27721 attaaatctg gtgtacgatg agcagaaacc acttttttct cataagctat ttctaattca
    27781 tctaatacat cacatgcttt tttcattgta tcccaatctg aggtactccc cataatgaca
    27841 ccaattacag caggcattac gtgatcaact ccttaataat ctcttttcga ctccttcatt
    27901 ctaacaatag gcacgataaa tgtcaacgaa aaatcgaaca tttaattgtt acattttatt
    27961 aacgttcgtg tttaggtcgt atttgctctt tttactagca ttatgtatct aatttcacta
    28021 aataaataaa aaaagaagct accatcaaag gtaagctcct cttcatttcc gaacttgttt
    28081 aacccaaaaa ccaccgtgaa tttgttttgg ctcagaggaa acaataaatg ccccattatc
    28141 aatttcaata atgtgtttat ataatttccg ctcattcttt ctttgagtca aaatttcaag
    28201 catcatccgt tcaccatcac gtccactcgc aagccaacta gtaaccccat aacctagatc
    28261 tcgaatttga tttggtaagt ctaagttata ttctttggta ataacattca ctgtaatata
    28321 gcctaaagca attcgctctt caattttcat accaacaata attcctacac caaatccaat
    28381 agcatatgct aaaacattgg caatattatt taagttatcc aaaaccaaac taagagcaac
    28441 tacatagata atcatttcaa acacacttga aagtgcagct aagtaacgat aacctttcat
    28501 cgttaaaagt aacctcaccg tataaatcgt cacatacaaa atatttacaa taaaaatagt
    28561 agccactata aatataccgt tatccactaa aataacccct ccacctaaaa actacattcc
    28621 actgagtctt ttactaatat aacatccatt aagatagctg acaaaagaaa cactt
//
LOCUS       DASDXX010000013        28298 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.013, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000013 DASDXX010000000
VERSION     DASDXX010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 28298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28298
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.013"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(45..803)
                     /locus_tag="U0280_000476"
     CDS             complement(45..803)
                     /locus_tag="U0280_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2270436.1"
                     /translation="MIHSTLSGITKRMAKIIFVKDEQNEFQAYDFLQNLIVEEPLMAT
                     LVFQGLLQLETAETRKLSTGKQILPDVHLIIGKSQAYSLQTTRVETTVDQPIQEMKAH
                     FKDKNCRLIYFTAFSGDETYYCFVKGYFKDKNPFTDQMSAYREEVKRVFLRRIEAETS
                     IGHADYQFETLKNKALANEGIAHYLDSFSASLGKYIFSKRMEKKWSQLDLALKSDLSP
                     VIIGRLEAGDPDLTLRMYQKVCTVLGVKTTFSVD"
     gene            complement(962..1261)
                     /locus_tag="U0280_000477"
     CDS             complement(962..1261)
                     /locus_tag="U0280_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270437.1"
                     /translation="MRFLKIIGHAVGVISCLMVLPSFVIAITSAILSFNPLYITYFFT
                     SPYARAVAVAEESGWGSGFNILLINYGAYLIAFGYTFFAIVKIYSWYQIAKEAKK"
     gene            complement(1273..2127)
                     /gene="noc"
                     /locus_tag="U0280_000478"
     CDS             complement(1273..2127)
                     /gene="noc"
                     /locus_tag="U0280_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion protein"
                     /protein_id="HEM2270438.1"
                     /translation="MPFSRLFGKKEKNQMDDIVEEGVQRVQELPMDKIFPNQFQPRTV
                     FDQDKIDELARTIRIHGVIQPIVVREMEPDYYEIIAGERRFRAVLSLEMEKIPAIIQN
                     LDDEEVAAIALIENLQREELTPIEEAKAYRSLLDMQDVTQEALAQRVGKSQSAIANKM
                     RLLKLPETVQEAVLNKQISERHARSLLALETEEQQVAILAEIAENHWNVKQTEARIQE
                     ILGVKKPVATKKTKPKRQAISRDVRIAMNTIKQSVTMVKDNGMDLDFTEEETDDFYQI
                     TIQIPKKK"
     gene            complement(2299..3105)
                     /locus_tag="U0280_000479"
     CDS             complement(2299..3105)
                     /locus_tag="U0280_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2270439.1"
                     /translation="MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEET
                     GTSISTITRFCRHVRCDSFVDLKMRVNTAATMVPSLGYDDLFEEVYSFYHKVIDNTVK
                     LIEPAKIREVVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIIT
                     SSITTKEDFVIGISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVY
                     NTLFVSKRYFANSQFSIMYVMDIISMMLLQNESYRDNMEKTINTVTDEFH"
     gene            complement(3089..3994)
                     /locus_tag="U0280_000480"
     CDS             complement(3089..3994)
                     /locus_tag="U0280_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2270440.1"
                     /translation="MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIM
                     PALIRIVEQEKTNVAGVCVASAGVVDSVKGKIIYAGYTIPKYTGTEIKAELEHRFHIP
                     CVVENDVNAACLGEFWLGGARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGY
                     MHLSQGRFQDVASTKALIKQVASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIEN
                     LVEGVVNLIYIFNPEVIVLGGGLMEEESFFKPRLKAAISTKLISPMFDTADITFAKLG
                     NEAGMIGALYHFLNQKEAEKDDDFK"
     gene            complement(4019..4465)
                     /locus_tag="U0280_000481"
     CDS             complement(4019..4465)
                     /locus_tag="U0280_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2270441.1"
                     /translation="MLLDRVTLEDIEVNLKAKDWREAIQTSARLLLERGAIKESYIDG
                     MIQSVENNGPYIVIAKHIALAHTRPEFGVIRGGLTFATLADGVAFGSDMFDPVKLVIT
                     LAATDSESHLEVLSELAEVLMDEEKVTRLIEANSSQAFYDELTKEG"
     gene            complement(4478..5134)
                     /locus_tag="U0280_000482"
     CDS             complement(4478..5134)
                     /locus_tag="U0280_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2270442.1"
                     /translation="MLKAIVMDFDGIVIDTEVVWYEIFKEWFKTKQNYDLSIEEFLQC
                     VGSNVDDLFRELNRTEQMDINRQDFEAETQATFIENSKSLPAKEGVESFIRELKERGL
                     KLALATSSQRPKPLYHLERLGLLGYFDAIITAEDVTRIKPEPDLFLEALRALDVKPSE
                     ALIVEDSRNGLLAGNSAGVNVLVIPNEVTKHSDLTPNYLERESLAEVDLTEIMAEYNK
                     "
     gene            complement(5197..6603)
                     /locus_tag="U0280_000483"
     CDS             complement(5197..6603)
                     /locus_tag="U0280_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HEM2270443.1"
                     /translation="MSIRVHVQKFGSKLSGMVIPNLGAFMAWGILTAIGVATGSEMLK
                     GFIAPMLNYLLPLLIAFAGGRAVHGYRGGVIGTVATMGAIISSDITMFIGAMIMGPLA
                     AWILKKFDERIDGKIPAGFELLVNNFSIGIIGAGLALFSYVAIAPMVEAVTKVLASGV
                     DVLINNHLLPLTALIIEPAKVLFLNNAIGQGILSPLATLQLAETGKSVLYLLESNPGP
                     GLGILLGYMFFGKGNSKASSYGASVIHLFGGIHEIYFPFVLMNPILILPLILGGMTGT
                     FILTMTNAGLVGVASPGSIITIMMMAAPGDHIKILIAVLCAALVTFITAIPFIKRMGN
                     KDSELQDAAKKMESLKGKKSSISSVFEATVDDFNFKNVKRIAYACDAGLGSSAMGATV
                     LQKKIKNAGLEDIKVFHIAIHELPTECDVVVTHKSLIDRAKEKQPDAYYVEITDYLGA
                     PEYQELIDKIVADREQKN"
     gene            complement(6637..7638)
                     /locus_tag="U0280_000484"
     CDS             complement(6637..7638)
                     /locus_tag="U0280_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2270444.1"
                     /translation="MTKQIKVGVIGVGQMGQYHAEIYQKLPQVELVAICEYNDERRAE
                     MAEKFQCKAYKDYHELLANTEIEAVSIVLPDNMHRDCVEEAVKYKKHILLEKPLAKEL
                     EDGKAMYELTKDYDKVFTVGFLLRFDPRFNMIKQRLDNGELGDIIHLYCRRNSPITGP
                     KRYIGASDLSMHVMIHDIDYINWYMDSEPVKVIAKSRSVLLKEYGMNDVIYAIVTYEN
                     GAIACLEACWVLPENSPTIIDDKLELVGTKGVAYVDSCDHGVRFVSEKGVSYPDSRHW
                     YYTNGEVSGDLAEEVMAFINNVANNTKSIITPKEAYDSLRVVDAIERSIAEGKEVSL"
     gene            complement(7658..8353)
                     /locus_tag="U0280_000485"
     CDS             complement(7658..8353)
                     /locus_tag="U0280_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM2270445.1"
                     /translation="MGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAV
                     GIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLEEVREICETGVEIVAMDA
                     TTRKRPHNEDLKDILSAIRKEFPNTLFMADTGSIEDVYYADSLGFDLIGTTLYGYTEE
                     TANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQ
                     EITTRFTNEIKKI"
     gene            complement(8555..9271)
                     /gene="rsmG"
                     /locus_tag="U0280_000486"
     CDS             complement(8555..9271)
                     /gene="rsmG"
                     /locus_tag="U0280_000486"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEM2270446.1"
                     /translation="MNPEQFQTALAEKGIELSDTQLKQFHDYFEMLVEWNEKMNLTAI
                     TDEKEVYLKHFYDSISAAVYVDFTKFDTICDVGAGAGFPSLPIKICFPHLKVSIVDSL
                     KKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTARAVARMSVLSELCM
                     PLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFFLPVEESERNIYVITKT
                     KETPNKYPRKPGTPNKLPIE"
     gene            complement(9424..9690)
                     /locus_tag="U0280_000487"
     CDS             complement(9424..9690)
                     /locus_tag="U0280_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270447.1"
                     /translation="MIDKLKAELLESRRNLEKNLIGMFVASQTHATSENRKRMFKMIK
                     RDKIADIKSNCQGYIDGLSTTAEGKWVNQAKKSFKENANKFDNC"
     gene            complement(9692..10057)
                     /locus_tag="U0280_000488"
     CDS             complement(9692..10057)
                     /locus_tag="U0280_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270448.1"
                     /translation="MDKQRQLLLKLENLDNDFNRKRRQLDEAMDDASQEKWRFHQELE
                     NLSEQIRYIHQKRDYEASEDLQKAYHLISSIQEEGDWKVKNTLTKLENEHEEHQALYK
                     KQVNSYEEELHQLKKDRDL"
     gene            complement(10050..11333)
                     /locus_tag="U0280_000489"
     CDS             complement(10050..11333)
                     /locus_tag="U0280_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM2270449.1"
                     /translation="MSLPNNDYERMRLARKEYDNLYLTEDVTISKVNGGTNTIGIVSQ
                     KINNKSTGEQSYIITDKYTPPIASISERNKVKELTILYKGSTAPANGNFNVPKHPDYK
                     DVRKDWLSNDIPTAIQITNGGGSTVTPQLKTSAETLKQTMKLYPNAQIYVYGHSLGSM
                     NAQYAIADLDKKDIKRISGGFFYQGPNIYSNLTPKQQDTVKAINALDRLFNFIDRKDY
                     VPIGYGIGDPTIGHLIEVESKKAGMVEQHMWGGYQFDKEGNILTNKEGSLQLAKYVTA
                     QQLAAINIMRTSFTKSGGGLSSSEEIFLDAAEALAITQGMKQTIQGEIRALKDVFDKE
                     IENAEELWRDTLSDARDIGSNLYESEILAALAWGGATEPEIVIDTVQDCEKSLVEATK
                     IEQEYDKLLERINEAIKSQLKTDQELAKQIGSMYG"
     gene            complement(11330..11722)
                     /locus_tag="U0280_000490"
     CDS             complement(11330..11722)
                     /locus_tag="U0280_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HEM2270450.1"
                     /translation="MKKRWIIILAITVITIFGLGVKFYMDEEKLNKEMIKVVYSDEAK
                     NAFYKGLKDLDTKALTKEGVIQSYEIDEKSINHNPMGGINVTVIINENPELYIKYTLD
                     KFNGKLECGSASIAGKLSKLLGRWKENS"
     gene            complement(11835..12226)
                     /locus_tag="U0280_000491"
                     /pseudo
     CDS             complement(11835..12226)
                     /locus_tag="U0280_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466328.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
     gene            complement(12251..12631)
                     /locus_tag="U0280_000492"
     CDS             complement(12251..12631)
                     /locus_tag="U0280_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HEM2270451.1"
                     /translation="MKKRWFIAMVVVVMIVAGLGVKFYMDEEKLNKEMINVVYSDEAK
                     RVFENGLKNLDAKALTGKGVINTYEIDKKSIKQNPMGGINVTLHVNGDSELYVFFTLN
                     KADDKKLIDDGGGNSAKLGKLLDN"
     gene            complement(12790..14679)
                     /gene="mnmG"
                     /locus_tag="U0280_000493"
     CDS             complement(12790..14679)
                     /gene="mnmG"
                     /locus_tag="U0280_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEM2270452.1"
                     /translation="MQTYDAGTFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMV
                     AFMPCNPSVGGPAKGVVVREIDALGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQAD
                     KWDYQHEMKHTIEKEENITLRQGLVDRLVIEDGVCKGVITNSGAIYYAKTVVITTGTF
                     SRGEIIVGELRYSSGPNNQQPSVKLSEHLEELGFELRRFKTGTPPRVKSSTIDYSKTE
                     EQPGDDHPRAFSFDTVEMLLDQLPCWLTYTNETTHEIIQANLHRSPMFTATKKGTGAR
                     YCPSIEDKIVRFSDKPRHQIFLEPEGKNTEEVYVQGLSTSLPEEVQREMLRTIPGLEN
                     VEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLFTAGQINGTSGYEEAAGQGLMAGINA
                     ARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYRLLLRHDNADLRLT
                     EIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIKPTAEVQAMLKEIGSGELKDGI
                     LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKSNLQVEKMKRME
                     DKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISILLVYIEQGKI
                     AKISK"
     gene            complement(14704..16077)
                     /gene="mnmE"
                     /locus_tag="U0280_000494"
     CDS             complement(14704..16077)
                     /gene="mnmE"
                     /locus_tag="U0280_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEM2270453.1"
                     /translation="MEFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSE
                     AESHTIHYGHIKEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR
                     NGANLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRN
                     LRQEILDALAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILRE
                     GLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG
                     IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNK
                     TDLETKLDIDRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSN
                     VRHIALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLF
                     NQFCLGK"
     gene            16435..17253
                     /locus_tag="U0280_000495"
     CDS             16435..17253
                     /locus_tag="U0280_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM2270454.1"
                     /translation="MKIHKLTWVLLMGLLLLSSCSTKQPNLYLSANAAAVYSVENGEP
                     LYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQK
                     RTWSVRDLYSAMLTMSANDAAETLGDRLDGANFPKEMNNQAKKLGMSSKTTFVSASGL
                     DVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGL
                     DGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGFKEN"
     gene            complement(17308..18015)
                     /locus_tag="U0280_000496"
     CDS             complement(17308..18015)
                     /locus_tag="U0280_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMUG2 DNA glycosylase family protein"
                     /protein_id="HEM2270455.1"
                     /translation="MTENTTIAKRILQFNEALANSSFDLPEGYRTVNPYSGDQSELVQ
                     KITTTFYQKYYNDTKLRRIILGSSPARRGSAVTGVPFEDAKHLQNETGIFIDKFYINQ
                     SSSDFLYDVMTEYGGCEAFYTDFYMNFVCPLGIVRMNAKGNEVNCNYYENKKLQEALK
                     PIILESLQNQIDCGIDTSVCYCIGSGENFNFLSKINEEHHFFDTIIPLEHPRFIMQYN
                     SKNKDVYMEKYLCALKS"
     gene            complement(18039..18566)
                     /locus_tag="U0280_000497"
     CDS             complement(18039..18566)
                     /locus_tag="U0280_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM2270456.1"
                     /translation="MARLSQEIILNMAEKIIYEKGMEKTTLYDIAGNLNVTHAALYKH
                     YRNKEDLFQKLALRWLEETSREIFDWTQEAGQTPDDALHDWLWLLADTKKKRYKTDRK
                     MFLLYTDYIEQNEELVKNHVAHLAQKAEEVSGRTNQGNAIITAFTYFHNPYFASRWEQ
                     AGYAELFEDVWHIVK"
     gene            18727..19458
                     /locus_tag="U0280_000498"
     CDS             18727..19458
                     /locus_tag="U0280_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2270457.1"
                     /translation="MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVVVHYSGNKAKAEA
                     LVENIVKSGGEAISVGGDVADEAQMTRAFDFIESQFGGIDVVVNTAGIMKLSPIATLD
                     MDEFDLIQRTNVRGTFVVSKQAALRVRDGGAIINFSTSVTRTSFPTYGAYVASKAGVE
                     SLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIA
                     ETVAFLAGPARWVNGQVIFTNGGLA"
     gene            complement(19505..20698)
                     /locus_tag="U0280_000499"
     CDS             complement(19505..20698)
                     /locus_tag="U0280_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2270458.1"
                     /translation="MNQVKGEKHSLMVLLVLFIGYTSVYVDKYTIGISLVTVSQDLGF
                     DPSQKGLILSAFFLGYTLFQIPMGYLNNRIGARPVLAVSIIIVGLFLVIFGFGYSLLF
                     LVVIRFLSGALGHAGYPPSVSNYISLHIPLNKRGFAQSAMLASSGFAAFIGPLLIAQL
                     LLSVGWRNTYYWIGIAVILIGFLILIVVPKAPKIDLNAQKEKIKVPFSELLKDKQLWI
                     LLLSALFINAANYGLTSWLASYLNEVRGISISEVSYISSLAGLCILIAGVVGGYFISR
                     FFKGKEPIIIFAFCVLGAFAVYGVYLFEQLALSVICLCLCNIFLIMAFTTLMGLPHKL
                     FQQSHIATKYAAINSGGVLGGFFAPMIIGDLVNATNSYQSAFLFLALTLLASGLIVLA
                     IKKDQ"
     gene            complement(20786..21976)
                     /locus_tag="U0280_000500"
     CDS             complement(20786..21976)
                     /locus_tag="U0280_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2270459.1"
                     /translation="MRTKLMNMLQERKDEITQIRRHLHEHPELSFHEAETAKFIQDFY
                     KGKDVEMATEVGNGHAVVVTIKGGKPGKTIALRADFDALPIEEQTELPFKSKKPGVMH
                     ACGHDGHTAYLLVLADCLIQLKENIPGTIKIVHQHAEETPPGGAKSVVESGILDDVDQ
                     IFGIHVFPFGESGQVYYHSGFAMAGRTYFKLKIQGVGGHGSSPHMANDAIVAGAYFVT
                     AIQTVVSRRLNPFDTGVITIGSFDGKGSFNVIKDAVELEGDVRYMNTENRDKMDAEIH
                     RIVAGMEAMFGVTVELTYTNDYPPLYNDPAVTEQVVASLQKGVGEYLTGISEYDMLSG
                     SEDFAYYLQKIPGVFFYIGAKPKNTSNAYFNHHPKFDIDEDALLVAAKSVADVVLDYY
                     KLNG"
     gene            complement(21992..23392)
                     /locus_tag="U0280_000501"
     CDS             complement(21992..23392)
                     /locus_tag="U0280_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2270460.1"
                     /translation="MTSTAYKGTNKLIVGIVFGVITFWLFAQSMVNIVPAVQSDLGIS
                     SDLLSIAISLTALFSGIFIVVAGGMADKFGRVKLTYIGLILSIIGSLLLVVTQGATLL
                     IIGRIIQGLSAACIMPATLALMKTYFEGADRQRALSYWSIGSWGGSGICSFAGGAIAT
                     YMGWRWIFIISIVFALLGMLLIKGTPESKVVQNTKAKFDSFGLVLFVIAMVCLNLIIT
                     RGSTFGWTSPITITMLVVFLISAGLFFRVELRQANGFIDFSLFKNKAYTGATLSNFLL
                     NAAAGTLVVANTYVQIGRGFTAFQSGLLSIGYLVCVLGMIRIGEKILQRVGARKPMIL
                     GSGITAVGIALMALTFIPGTLYTVLVFIGFALFGIGLGMYATPSTDTAISNAPEDKVG
                     VASGIYKMASSLGGSFGVAISATIYGVIALSGNIDLAAMVGLLTNVGFCVVSLISVAI
                     TTPSAKKALELKAAKE"
     gene            complement(23392..24594)
                     /locus_tag="U0280_000502"
     CDS             complement(23392..24594)
                     /locus_tag="U0280_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2270461.1"
                     /translation="MEVWTMKEKLFQKLDEKRDRMIEIRRYLHEHPELSFQEENTAKY
                     IADFYKEMDCDVRTHVGGNGVVVTIDTGKPGKTLAIRADFDALPITEETGLAFASKNP
                     GVMHACGHDGHTAYMLILGETLIEMKQELTGKIVILHQHAEETPPGGAIQMIQDGALD
                     GVDNVLGIHVMSTMKTGEVFYREGAIQTGRSYFKLKVQGQGGHGSSPHLANDAIVAAS
                     EFVVAVQTVISRRLNPFDVGSITIGSFDGKGSFNVIKDAVELEGDVRSMSEEARNIIQ
                     KEITRIVSGIEAMFGVTCELDYKNDYPVLNNDEALTDFVVKSIKGAKIPEITDVVRCE
                     PQPPSEDFAYYAKERPSSFFYVGAMPADGHFYPHHHPKFDINEDSLLIASKAMGACVV
                     DYLKGENN"
     gene            complement(24788..27130)
                     /locus_tag="U0280_000503"
     CDS             complement(24788..27130)
                     /locus_tag="U0280_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2270462.1"
                     /translation="MSHLKDYTIGIQHIKQLTSEISLGTKLVFAISGQITIKVSEQKF
                     YLQEGDVLVLDRNTFYTIEGNEDNLFINLTISDTFFAHYYEDYFQHSFKFFSKESDPG
                     RERVVGSLRKSVSELLIASATKKRANKLEAQSALFQILLLLTRFLKKGIPSSARKEVN
                     DKRISRIIREVEERFDEALSLREFAQKEFLSEAYLSRYFKKTTGLGFLQYLTEVRLKH
                     AIQDLLHSAESITEIALKNGFSSQKHFSEVFKFHFELTPSEYRAEHHVETNLLIDNKT
                     SELGASIEQIVPSPEILVKLSRLYHDVEPGKELNKAPFEKKKIDITEKTERCLSENMN
                     ILTIGELKEVLKDNVQKQIITTRDEIGINYIGIRHLFRGSTFLPETETDELVPTSSPY
                     ANADLALTFLKQQNLQLFIRLEYQDIVGDEAAVFERLDHFLKHCMQVFGREFVSKWHF
                     MFFEPKNTYADKEELKKLYLKIYHTIKSRFPAIQVGNFVPFSLSKNAVPERHTWFLEE
                     ADKMDFVAYNANQNEAVDFSKEDMKSFSISEDYCLSKTLQLKAFLKHHHINKPLMLVN
                     WNTLSGNTRYTNGTFFRGALVLKTMLDLVPEVDALGFWINTELHEGDDSKLNISLDGI
                     EMFHFFNGKRPAFYAVKFLRRLKGVVVAKGEDYIMTKHADGYQLILMNCATINPRYSV
                     EERFIKEEQKEVHIRLTGLYAGDYQVCKWQFDRDNGALYSKYWQLNSKYGLDKEILDY
                     IVDASQPTLTVSDETITEDWSFYAYLDINAIHFYEFRSTV"
     gene            27343..>28298
                     /locus_tag="U0280_000504"
     CDS             27343..>28298
                     /locus_tag="U0280_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2270463.1"
                     /translation="MKTSKIIIASLVSLTLVSNPILTFAATNDVIDNTTEITTDKETS
                     PTQPTIKNTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHN
                     SSIADMTGIEKLTGLTKLICTYNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLT
                     YLNCDTNKLTKIDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT
                     PQTQLTTLDCSFNKITALDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT
                     EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL"
BASE COUNT         8112 a         6149 c         4868 g         9169 t
ORIGIN      
        1 aaaataaaaa aagcaaccaa cctaagctga ttacttttct atcttcaatc tacagagaat
       61 gttgtcttaa cacctagaac cgtgcagact ttttgataca ttctaagagt caaatctgga
      121 tcccctgctt ctaaacgccc aataataaca ggagataaat ctgatttaag cgctaaatct
      181 agttgagacc atttcttctc cattcgttta gagaaaatat atttaccaag gcttgctgaa
      241 aaactatcta agtaatgagc aatgccttca tttgctaaag ctttattttt tagtgtttcg
      301 aattgatagt ctgcatgacc aatgcttgtt tccgcttcaa tacgacgcaa gaatacgcgt
      361 ttgacttctt cgcggtaagc actcatttga tccgtgaacg ggtttttatc tttaaaatag
      421 cctttaacga aacaataata ggtttcatcg ccactaaaag cagtgaagta aattaaacga
      481 caatttttat ctttaaaatg tgctttcatc tcttgaatcg gttggtctac agttgtttcc
      541 actcgagttg tttgtagtga gtaagcttga cttttaccga taattaaatg gacatcgggg
      601 agaatttgct taccagtgct aagttttctc gtttctgctg tttctagttg taacaggcct
      661 tgaaatacta aagtggccat tagtggttct tccacaatta aattttgtaa gaaatcatac
      721 gcttggaact cattttgttc gtctttcaca aaaatgattt ttgccattcg tttcgtgatt
      781 ccactcagag ttgagtgaat cactccctcc tttacaactt tacctaattc tattgtactt
      841 ttttctgctc aaaattgcac ttattttctc tattttttac aaaataaacc aaacccactc
      901 gaattgagtt gctttccttt tttgaaaata aaaaacccgc ttcaataagc aggttttgca
      961 gctatttttt cgcttctttc gcgatttggt accaactgta aatcttcact atcgcaaaga
     1021 aagtatagcc aaatgcgatg agatatgccc cgtaattaat taatagaatg ttgaagccac
     1081 ttccccaacc agactcttct gctacggcta ctgctcgggc ataggggcta gtgaaaaagt
     1141 aggtaatata tagtggatta aaacttaaaa tagcacttgt aatcgctatt acgaaagatg
     1201 gaagtaccat caaacaacta atgacaccaa ctgcatgtcc aattatcttc aaaaacctca
     1261 ctgctacacc tcttatttct ttttaggaat ttgaatggta atttgataaa aatcatctgt
     1321 ctcttcttcg gtgaaatcta ggtccattcc gttatcttta accattgtaa ccgattgttt
     1381 aatcgtattc atagcgatac gcacgtcacg actaatagct tggcgttttg gtttggtttt
     1441 tttagtagct actggttttt tcacgcccaa aatttcttga attcttgctt cggtttgttt
     1501 gacgttccag tgattttcag ctatttcggc taaaattgcg acttgctgtt cttctgtttc
     1561 taatgcgagt aacgaacgag catggcgctc tgaaatttgt ttgttaagaa cggcttcttg
     1621 gaccgtttct ggtagtttta gaagtcgcat tttgtttgca atggcagact ggcttttccc
     1681 gacacgttgc gcaagggctt cttgtgtcac gtcctgcatg tctagtaaac tccgatacgc
     1741 tttcgcttcc tcaattggcg tcaattcttc acgttgcaag ttttcaatta acgcaatcgc
     1801 tgctacttct tcatcatcta aattttgaat aattgctgga attttttcca tttctaaaga
     1861 aagcacagca cgaaaacgac gctcgcctgc aatgatttca taataatccg gttccatttc
     1921 tctaaccaca atcggctgaa taacgccgtg aattcggata gttcgagcaa gttcatcaat
     1981 cttatcttga tcgaatactg tccgtggttg gaattggttc gggaaaattt tatccatagg
     2041 aagttcttgt acgcgttgta ctccttcttc tactatatca tccatttgat tcttctcttt
     2101 ttttccaaat aaacgtgaaa aaggcatctg ggtccttcct ttccggaaca tctcggggtt
     2161 tcttaatata ttatctggct atccgcaagt ctcttaaact attttagcag aaatgctaga
     2221 gaaaaacacg cttattctgt cctttaaatg tgaaaaaata gatagagctg ctaaagtttc
     2281 acagtcctat ctattttctt aatgaaattc atcggtaacg gtattgatgg ttttttccat
     2341 attgtcgcgg taagactcat tttgtagcaa catcatggaa ataatatcca tcacatacat
     2401 aatcgaaaac tggctattag caaaatacct tttacttacg aataaagtat tgtaaaccgg
     2461 aatagtgacg tcactgattt cggtcatttc actattttca aaactggtaa atgtagcaac
     2521 tttacttttg tttttcttag cgatttttag cgccgtgact agctctgggg tgttacctga
     2581 attggaaatg ccgataacaa aatcttcttt tgttgtgatg gagctagtga taatcatcat
     2641 atgcggatcg ttgacactga tgacgtttaa ccccattcga ataaggcgct gcgacatttc
     2701 aacggcagtg agccccgaac ttccgacgcc gcaaatatag actcgcttag cttcttgaat
     2761 gtactgcacc acttcacgga tcttcgctgg ttcaatcagc ttcaccgtgt tatcaattac
     2821 tttatggtag aacgaataaa cctcttcaaa aaggtcatca taaccaagtg acggaaccat
     2881 tgtcgctgca gtattcaccc gcattttcaa atcaacaaaa ctatcacagc gtacatggcg
     2941 acaaaatctc gttatcgtcg aaatggatgt gccagtttct tcagctagct ctttaatatt
     3001 aatattcttg agttcatcac ttttttctaa aatatacttc gcaatttgtt tttctttatt
     3061 cggtaatcga ttgtaatttt gttggatttc atttaaaatc gtcatctttt tcggcctctt
     3121 tctggtttaa gaaatgataa agcgcaccaa tcatccctgc ttcatttccc agctttgcga
     3181 aagtaatatc tgctgtatcg aacatcggtg agattaattt ggttgagata gccgctttta
     3241 gacgcggttt gaagaatgac tcttcttcca ttaatccgcc accgagtaca atcacttctg
     3301 ggttgaaaat atagattaag tttactacac cttctactaa attctcaatc cattgctcta
     3361 tttcagccag cacatctgca tctccgctat aggcccattc catgacttga cgaccattta
     3421 acgcattttc ctcgatattt tttcgcgagg ctacttgttt aatcaatgct tttgttgaag
     3481 caacatcttg aaatctccct tgtgaaaggt gcatatagcc cacttcacat gctgtaaaag
     3541 acgatccatt tattagtttg tcgtttagta acattgctcc gccgattccg gttccaattg
     3601 tcaaacagag cacgctccca cgtccccgtg ctccacccaa ccaaaactcg ccaaggcagg
     3661 ctgcatttac gtcattttcc actacgcacg gaatatgaaa tcggtgctct agttcagctt
     3721 ttatttcagt tccagtgtat ttgggaatcg tgtagccagc ataaataatt ttgcctttca
     3781 cagaatccac aacacccgca gaggccacac agacgcccgc tacattcgtt ttttcttgtt
     3841 cgacaatccg aataagcgcg ggcatgattt gattcgctcc gccagttata ggcgtcacac
     3901 aagacttaag atcgcccacc cgcttacctt cttgattaaa tttagcatat ttgatactcg
     3961 ttccaccaat gtcgacacaa agataatttt ccatttcttc acctctttag tgaaattatt
     4021 atccttcttt tgttaactcg tcgtaaaacg cttggcttga atttgcttcg atcaaacggg
     4081 ttaccttttc ctcgtccatg agcacttctg caagctctga caacacttct aaatggcttt
     4141 ctgagtctgt tgccgcaagg gtaataacta gtttcaccgg gtcgaacatg tcgcttccaa
     4201 aagccacgcc gtcagccagt gttgcaaaag ttaggccacc gcgaatgacg ccgaattctg
     4261 gtcgtgtgtg cgctagggcg atatgtttag caatcactat atatggtcca ttattttcta
     4321 cactttgaat cattccgtca atataactct ctttgatagc gcctcgttct agtaaaagtc
     4381 ttgctgatgt ttggatggct tcgcgccagt cttttgcttt taaatttacc tcaatatctt
     4441 ctaaagtaac tcggtctaat aacatgctcg cgccccctta tttattatat tcagccatta
     4501 tttctgttaa atctacctcc gccagcgact ctcgctccaa atagttcggg gttaaatcac
     4561 tatgttttgt tacttcattt ggaatgacaa gaacattgac acccgcacta tttcccgcca
     4621 aaaggccatt tcgcgagtct tctacgataa gagcctccga tggcttaaca tccagtgctc
     4681 tcaaagcttc taaaaacaag tccggttccg gcttgattcg cgtaacatcc tccgccgtaa
     4741 taatcgcatc aaaatatccg agtaagccta gtcgttccaa atgatagagt ggttttggtc
     4801 gctgcgatga ggtcgcaagt gctaatttta atccacgttc ttttaattca cgaataaagc
     4861 tttccacgcc ttctttggcc ggtaaacttt tactgttttc aataaacgtt gcttgtgttt
     4921 ctgcttcgaa gtcttgtcga ttaatatcca tttgctctgt ccggttgagt tcgcgaaaca
     4981 aatcgtccac atttgaccca acgcactgca aaaactcctc gatagaaagg tcataattct
     5041 gcttcgtttt aaaccattct ttaaaaattt cataccaaac tacttctgta tcaataacaa
     5101 ttccgtcaaa gtccatcaca atcgctttta acattgtctt cctcctaccc attttactat
     5161 tcaaagcgct cctaaaaaga agcgcttaca aataagttaa ttcttttgtt ctcggtctgc
     5221 aactatttta tctatcagtt cttgatattc tggtgcgccg aggtaatccg ttatttctac
     5281 ataatacgca tctggttgct tttctttggc tcggtcgata agggatttat gcgtcacgac
     5341 tacatcgcat tcggtcggca attcgtggat ggcgatatgg aacactttaa tatcctctaa
     5401 gccagcattt ttgatttttt tctgtagtac ggtcgcgccc atcgcactag atccaagtcc
     5461 cgcatcacag gcataagcga ttcttttaac atttttaaaa ttaaaatcat ctactgtagc
     5521 ttcgaaaacg gaggaaatac tgctcttttt gcctttaagg ctttccattt tcttcgctgc
     5581 atcttgtagt tcagagtctt tgttacccat gcgtttaata aatggaatgg cagtaatgaa
     5641 tgtaacaagt gccgcacata gcaccgcaat aaggatctta atgtgatcgc cgggtgctgc
     5701 catcatcatg attgtgataa tactaccagg agaagccaca ccaacaagtc ccgcatttgt
     5761 cattgttaaa ataaatgttc ctgtcatacc accaagaatt agcggtaaaa taagaattgg
     5821 attcattaaa acgaatggga agtaaatttc gtgaatacca ccaaataggt gaataacact
     5881 tgccccgtag gaagatgctt tggagtttcc tttaccaaag aacatatagc caagcaaaat
     5941 tccaagtcct ggtccagggt ttgattctag taagtaaagc actgatttcc ctgtttctgc
     6001 gagttgcaag gtggctagtg gacttagaat accttgaccg atcgcattgt ttaagaataa
     6061 gaccttggcc ggctcaataa ttaaagccgt tagtgggagc aaatgattat tgattaatac
     6121 atccacgcca cttgctaata cttttgttac agcttcgacc attggagcaa tcgccacata
     6181 agaaaatagt gctaatcccg ctccaattat cccaatcgaa aagttgttaa ctaatagttc
     6241 aaatccagct ggaatttttc catcaatacg ttcatcaaat tttttgagta tccaagctgc
     6301 gagcgggccc attatcattg cgccaataaa catggttata tccgaactaa taattgctcc
     6361 cattgtcgca acagtaccaa taactccgcc tcggtaaccg tgaaccgctc gacctccagc
     6421 aaaggcaata agaagtggta acaagtaatt tagcattggt gcgatgaacc cttttaacat
     6481 ctcagagcct gtagccaccc caattgccgt taaaataccc caagccataa aagctcccaa
     6541 attcggaatg accataccac ttagcttact cccaaacttt tgtacatgta cccgaataga
     6601 catatttccc cctccaatca tatgtgtggc gcaattttat agtgatactt ctttcccctc
     6661 agcaatcgaa cgttcaatcg catctactac tcgtaaggaa tcatacgctt cttttggtgt
     6721 aataattgat tttgtgttat tcgccacgtt attaataaat gccattactt cctcagctaa
     6781 atcgccggaa acttcgccat ttgtgtaata ccagtgtctt gaatccggat aagatacccc
     6841 tttttcacta acaaaacgaa caccgtggtc gcaagagtct acatatgcta cgccttttgt
     6901 tccgactaat tcaagtttgt cgtcaatgat ggttggcgaa ttttctggca agacccagca
     6961 agcttccagg caagcaattg cgccattttc gtacgttaca atggcataaa tcacatcatt
     7021 catgccgtat tctttaagta aaacactgcg acttttggca ataactttga ctggctcgct
     7081 atccatgtac cagttaatat aatcaatatc gtgaatcatt acgtgcatac ttaaatcaga
     7141 agcacctatg taacgctttg gcccggtaat tggactgtta cgacgacaat aaagatgaat
     7201 aatatcaccc aattcgccat tatcgaggcg ctgtttaatc atattaaaac gaggatcaaa
     7261 tctgagtaaa aagccaactg taaacacttt gtcgtagtct ttggtcagtt catacattgc
     7321 tttgccgtct tccagttctt ttgcaagtgg tttttcgagt aaaatgtgtt ttttgtattt
     7381 tacggcttct tccacgcaat cacggtgcat attatcaggt aaaacaatgc tcacagcttc
     7441 aatctccgta tttgctagaa gttcgtggta gtctttgtat gctttacact gaaatttttc
     7501 tgccatttcg gcgcgtcttt catcgttgta ctcacaaatt gctactaact ctacttgcgg
     7561 aagcttttgg taaatttctg catgatactg ccccatttgt ccaacgccaa ttacgccaac
     7621 tttgatttgc tttgtcatat cacttacctc tttcttctta gattttttta atttcatttg
     7681 taaagcgggt ggttatttcc tgtggccgag ttactgcgcc gccaacaaca acggcataac
     7741 aacctaacgt aagaacttgt cgtgctttac taggcgaatc gattttccct tctgcaatca
     7801 ctgggcgctt cgtacttttc aaaacttctt tcaaatggga gaaatcgtcg tcgctgatat
     7861 ttttattcgc tgtttcttcg gtgtagccgt aaagtgtcgt gccaattaag tcaaaaccga
     7921 gggaatcagc gtaataaacg tcttcaatac tacctgtgtc tgccatgaaa agcgtgtttg
     7981 gaaactcttt tcgaatggca cttagtatgt ctttgaggtc ttcgttatgt ggtctttttc
     8041 tcgttgttgc atccatcgca acaatttcta ctcccgtttc acatatttct ctgacttctt
     8101 ctaaggttgg tgtgataaat acgtccgaat catcgtagtc ttttttgtaa ataccgataa
     8161 tggggacgtc gatctcactt tgaattgccc taatatcttt tgcggtattt gctcggatac
     8221 caacagcacc accttgaact gcggccagag ccattttcga cataataaat gcactatgaa
     8281 gtggttcgtc ttctaaagct tggcaggaaa ccactaaccc gcctttgatt ttttccataa
     8341 cagaattgcc cactgatact cctcctctat actgtgtttc agtgtaaagt atgcgttttc
     8401 aaacagacta tatcataaga aaatgatttt atcaatatca attaaatgaa aattattttc
     8461 atattttagt gtggctagtt gcggaaacta gctttaaaaa atgacgttgc tgttaaaaat
     8521 aaaaagtcct ttcgtttgaa aggactttgt tagtttattc gattggtaat ttgttgggtg
     8581 ttccgggttt gcgtggatat ttgttggggg tttcttttgt tttcgtgatg acgtagatat
     8641 tgcgctcgct ttcttctact ggtaggaaga aagagaagtg ttcctcgact tttccgccga
     8701 atagtttgat ggctttttcg gcagtttgca gctcttgttc ggcttgggct gctttcatta
     8761 ctaagaacga accgcctttt ttgacaagtg gcatgcaaag ctcggataat acgctcattc
     8821 ttgctacggc acgtgcggtt acaaggtcgt atttttcgcg gtgcgctttg ttttgaccaa
     8881 atgtttcagc gcgatcatga taaaaatgca catccgttag acctaatttt tctgctagcg
     8941 catcaaggaa agtcatgcgt tttttcaagg agtctacgat gcttactttt agatgcggga
     9001 agcagatttt aattgggaga cttggaaaac cagcgccagc cccgacatca caaatcgtat
     9061 cgaacttagt aaagtctaca taaaccgcgg cagagataga atcgtaaaag tgctttaaat
     9121 acacttcttt ttcatcagta atagctgtta aattcatttt ttcattccat tctactaaca
     9181 tttcgaagta atcgtggaat tgttttagtt gcgtgtcgct taattctatt cctttttcag
     9241 caagtgctgt ttggaattgc tctggattca tattttttcc tcactttatt ttcgcgattt
     9301 ttgccgtgtt taggatggta gacgggtttg gtttatactt ttaaacaggc ttgtaccata
     9361 tattttagct cattattttc aagtataagt attttcgttc tttttagcaa gttcgtatta
     9421 cgtttaacaa ttatcaaact tgttggcatt ctctttaaaa ctttttttgg cttgatttac
     9481 ccattttcct tctgctgtgg tggaaagtcc atctatgtaa ccctgacaat tgctttttat
     9541 atctgctatt ttgtcccgtt tgatcatttt gaacattcgt ttgcgatttt ctgatgttgc
     9601 atgagtttgg ctcgccacaa acatcccaat aagatttttt tctagatttc tgcgtgactc
     9661 taataattct gcttttagtt tatctatcat gttatagatc acgatccttt tttagctgat
     9721 gtagttcttc ttcataagaa ttcacttgtt tcttataaag tgcttgatgc tcttcgtgtt
     9781 cattttctag ctttgttagt gtgtttttta ctttccaatc gccttcttct tggatagaac
     9841 tgattaaatg gtaggctttt tgcaagtctt cagatgcttc gtaatctctt ttttgatgga
     9901 tatacctgat ttgttcagaa aggttttcta gttcttggtg aaaccgccat ttttcttgag
     9961 atgcgtcgtc catcgcttcg tccaattgtc gtctttttct attaaaatca ttatctaaat
    10021 tttctagttt tagcagtagt tgtctttgtt tatccataca tgctccctat ttgtttggct
    10081 aattcttggt cggtttttag ctggcttttt attgcttcgt tgattcgttc tagcaattta
    10141 tcatactctt gttctatttt ggttgcttcg actaaggatt tttcgcaatc ttgcactgtg
    10201 tctatcacaa tttccggctc agtcgccccg ccccaagcaa gtgcggcgag tatttctgac
    10261 tcatatagat tggagccgat atcccttgca tctgaaagcg tatcgcgcca caactcttca
    10321 gcattctcga tttctttatc aaaaacatct tttaaagctc taatttcgcc ttgaatcgtt
    10381 tgtttcatcc cttgcgtaat tgctagtgct tccgctgcat ccaagaatat ttcttcggat
    10441 gaggataggc caccaccgct ttttgtaaaa ctggttcgca tgatgttgat agctgctaat
    10501 tgttgcgctg ttacgtattt agctaattga aggctgcctt ctttatttgt taggatgttt
    10561 ccttctttgt caaactgata accaccccac atatgttgct caaccatacc agcttttttc
    10621 gactcaacct ctattaaatg gccaattgtc gggtctccga taccataacc aattggcaca
    10681 taatccttcc tatcaataaa attaaataat ctatctaaag cgtttattgc ttttacggta
    10741 tcttgttgtt ttggcgttag gttggagtag atattcgggc cttggtagaa gaaaccgccg
    10801 ctgatgcgtt tgatgtcttt tttatctaag tctgcgatag cgtactgggc gttcatggag
    10861 cctagagaat gaccgtatac atagatttgg gcgtttgggt agagtttcat ggtttgtttt
    10921 aaggtttctg cggaggtttt tagttggggt gttactgtgg atcctccgcc atttgtgatt
    10981 tggattgcgg ttggaatatc attacttaac cagtccttcc tcacatcttt ataatctgga
    11041 tgttttggaa cattaaagtt tccattagcc ggtgcggtag aacctttgta aaggattgtt
    11101 agttctttta ctttgtttct ttcgctgatg gaggctatgg gtggcgtgta tttgtctgtg
    11161 atgatgtagg attgttcccc ggttgatttg ttgttgattt tttgggatac gattccgatg
    11221 gtattcgttc ctccattgac ttttgagata gttacatctt ctgtaaggta taaattatca
    11281 tactcttttc gcgccagtct cattctttcg taatcattat taggtagact catgagttct
    11341 ccttccaacg acctaacagc ttggaaagtt ttccagctat acttgcgctt ccacactcta
    11401 atttgccatt aaatttatcc aaagtatatt ttatatacaa ttctggattt tcatttatga
    11461 ttactgtaac attaatacct cccataggat tgtgattaat gcttttttca tcaatttcat
    11521 atgattgaat tacgccttct ttagtcaatg cttttgtatc taaatccttt aagcctttgt
    11581 aaaaagcatt tttcgcttca tcactataaa ccacttttat catttcttta tttaatttct
    11641 cttcgtccat atagaatttc acccctaaac caaaaatggt tattactgta attgctaata
    11701 ttattatcca tctctttttc aactcttcac ctctgttgta tgacttttta tttgtaggtc
    11761 tattttatca catgttagaa attttcactt tctttttttt cagtctttta atcgcctctc
    11821 agctctataa aaattcattt ataaccgttc aaaagcccca attgttttgt aagctcctta
    11881 gatatgcttg ctccaccact ctttaattct tcattatttt tttcaacgtg tatgttaatt
    11941 tcaaagcagg atccttgtta ataactaatg caactattat tccgcccatt ggattaggct
    12001 ctatactttc cttgtcaact tcatatgatt gaattagccc ttcttttgta aatgctttcg
    12061 tatcaataag ttttatatca tcattgaata cttcttttgc ttcattgcta caaaccacat
    12121 tcatcatttc tgtatttaat ttctcttcat ccatataaaa ttttatccct agaccaaaaa
    12181 taatcattat tgcaattcca aatagtatta tccatctctt tttcacacat tcacctctgt
    12241 ttttattttc ttagttgtct aataattttc ctaattttgc agaatttccg ccaccatcat
    12301 caattagttt tttgtcatca gctttattca atgtaaaaaa aacatataac tcagaatctc
    12361 cattaacgtg caaagtaaca ttgattcctc ccatagggtt ttgtttgata cttttcttat
    12421 caatttcata tgtgttaatt acacccttcc cagtcaatgc tttagcatcc aaatttttca
    12481 acccattttc aaaaactctt ttcgcttcat cactatatac tacatttatc atttctttat
    12541 ttaatttctc ttcatccata taaaatttca cgcctaatcc cgcaacaatc attactacaa
    12601 ctaccattgc tataaaccac ctctttttca cacattcacc tctgcagtat gtcttcttct
    12661 atgtaatccc aatctacctt aattaaaaac aagaaaaaac cacattattc agcggaaact
    12721 ttcaacttaa acggtaagtt tgaagttttc gtgaacatgt ggtttcagta attatagtaa
    12781 tccgtgttct tatttactta ttttagctat ctttccttgc tcaatataaa ctaacaaaat
    12841 agatatatcg gctgggttta ctccgctgat acggctcgct tgggcgatgg aaaggggttc
    12901 gattttcttt aatttttcta gggcttctgt tgctaggccg ctgattgcat cataatcgat
    12961 gttttctggg attttcttgt cttccatgcg tttcattttt tctacttgaa ggttggattt
    13021 ttggatgtag ccttcgtatt taatttgaat ttctacttgt tcagcgattt cgtcggtcac
    13081 aaatgtttca cgtgaaacaa tttgggcgat cttgtcgtaa gttatttcgg gtcggcgaag
    13141 taaatctgct gctagaattc cgtcttttag ctcgcctgag ccgatttctt ttagcattgc
    13201 ttggacttca gcagttggtt taatgcgtgt tttttgtagt ctttcttttt ctgcttcgat
    13261 ggcactttgt tttgctaaaa agcgttcata acgttcgtcg ctaattaagc cgatttcatg
    13321 accgatttct gttaaacgta aatctgcatt atcatggcgt aatagcaaac ggtattcggc
    13381 acgagatgta agtaaacgat atggttcttc agttcctttt gttactaaat cgtcaattaa
    13441 aacgccgata taagcttggt cacgaccaag gataactggt tctttttcaa agactttacg
    13501 tgcggcattg attcctgcca ttaatccttg tcctgctgct tcttcgtaac cacttgtacc
    13561 attaatttgg ccggctgtga aaagtccttc gactaattta gtttcaagtg atggccacag
    13621 ttggtctggc ataactgcat catattcgat agcgtagcca acacgcatca tttctacatt
    13681 ttcaagtccc ggaatagttc ttaacatttc acgttgcact tcttctggca aactggtgga
    13741 aagaccttgg acatatactt cttcggtatt tttgccttct ggttcaagga agatttggtg
    13801 tcttggtttg tcgctgaaac gaacaatttt atcttcaatg gatgggcaat atcttgcgcc
    13861 agtgcctttc ttcgttgctg taaacattgg tgaacggtgt aagttcgctt ggattatttc
    13921 gtgggttgtt tcgttggtat aagttaacca acacggtagt tggtcaagca acatttccac
    13981 cgtatcaaag ctaaatgccc gcggatgatc gtcacccggt tgttcttctg tttttgaata
    14041 gtcaatcgta cttgatttta cgcgcggtgg tgttcctgtt ttaaagcgac gcagttcaaa
    14101 acctagttct tccaggtgtt ctgaaagttt cacagaaggt tgttggttgt ttggaccgct
    14161 ggaatagcgc agttcaccaa caataatttc gccacgtgag aaagttccag tagtaataac
    14221 gactgttttc gcgtagtaaa tcgcgccact gtttgtaata acgcctttac acacgccatc
    14281 ttcaatcact aaacggtcaa caagtccttg gcgcaaagtg atattttctt ctttttcaat
    14341 tgtgtgtttc atttcgtgtt ggtaatccca tttgtctgct tgagcacgta atgcgcgaac
    14401 agcgggacct ttacctgtat ttagcatccg catttggata tacgttttat ccgtgttgcg
    14461 gcccatttcg ccaccaagag catcaatttc gcgcacaacc acgccttttg ctggacctcc
    14521 aacagaagga ttacatggca taaaagcgac catatctaaa tttatcgtta acatcagtgt
    14581 ttttgcgccc attcgaccac tggcaagacc tgcttctaca cccgcatggc ctgcaccaac
    14641 aacgatgacg tcaaaagttc ctgcatcata ggtttgcatt ttataaaaac atctcctaaa
    14701 aaatcatttt ccaaggcaaa attgattgaa caactgatcg agtaattcat cctggacaga
    14761 atcaccagta atttcaccta gtaaatccca tgcacgagtc atatcaatct ggacaatatc
    14821 cactggcata ccgagctgaa tccctgttgt aacgccattt aaagcttcaa gtgcttggtg
    14881 aaggagcgca atgtgtcgaa cgttcgatac atatgttgca tcacccgcat caatgtcacc
    14941 cgcaaaaaac agtgttttaa tcgcttcttc taaagcctct aaaccttcat cgtttactag
    15001 agaagtggaa acaatcgggt tttctccagc aagttcacgc actctatcta tatcaagctt
    15061 tgtttccaaa tctgttttat ttaaaacgac cacataatta tgacccgcgg ctgcttcaaa
    15121 taacgcttca tcttccactg tcagctcttc gttttgattt aatactagca ggataaaatc
    15181 ggcatccgcc aaggcttttc ttgaacgttc tacaccaatt ttttccacaa tatcttctgt
    15241 ctcacgaatt ccagctgtat cgattaaacg cagcggaaca ccacgaacat tgacgtattc
    15301 ttctataata tctcgcgtcg tccccgcaat atctgtgaca atcgcttttt cttcttgaat
    15361 tagttggtta agcaaggacg atttcccaac atttggtcga ccgataatgg ctgttgccaa
    15421 tccttcgcgg agaattttcc cttggcttgc tgtttgtaaa agttgctcga cggaagcgcg
    15481 aactagctcg gttttctcga gtagcattcg ctgagtcatt tcctccacat catcatactc
    15541 cggatagtcg atatttactt cgacttgcgc tagtgcatcc aaaatttctt gacgtaaatt
    15601 gcgaatcaac cgtgaaagat ttccgtccat ttgccgaatt gccacgccca tcgcccggtc
    15661 tgtcttggcg cgaattaagt ccatcacagc ctccgcttgc gacaaatcaa ttcttccatt
    15721 taaaaatgcg cgctttgtga attcgcctgg ttcagctaaa ttagccccat ttcgaagtaa
    15781 cagttgcaac acgcggttca cggaaacaat tccgccgtgc gcgttgattt ctaccacatc
    15841 ttcccgtgta aaagtacgcg gcgcacgcat aactgtgacc attacttcct caatcacttc
    15901 gccgtcttct tttatatgac cgtagtgaat ggtgtgactt tctgcttcac ttaagctatt
    15961 tttggcataa aaaatacgat ccgctatctg aatcgcctct ggaccgctta atctaataat
    16021 agcaatggcc ccttctcccg gcggtgttga gattgcagca atagtatcaa attccattct
    16081 ttactcatcc tttctcatta gaatttcagc tcaaataagc cttatcctat tttgaataaa
    16141 ttttggcaca tgattttgtg cattttcaac aacttacgct ccgctttgac caaagcaatt
    16201 aaattgttag tattttgaag gttatccata gacttattaa catatccaca gaaaaaccat
    16261 taataaaaat tcatccatac cattttaact tatccacatg tgaataacaa tagttttatc
    16321 cttactagtt aagaaaactt aaattttcta gttaaagctt taacttatcc ttccacttcc
    16381 ttggctttaa ctcaattctt tttatctata ctaaagttaa aaggaggaga aaaaatgaaa
    16441 atacataaac taacttgggt gctattaatg gggctactac tgctctcatc ctgttccaca
    16501 aagcaaccaa acctatattt gtcagcaaat gccgccgcgg tttattcagt cgaaaatggt
    16561 gaaccgttat atgaagaaaa cgctgataaa gtaatgccga ttgccagttt gaccaaatta
    16621 atgacagctt ttttagtttt agaggctgtg gataacaatg aattatcgtg ggatgaaaag
    16681 cttgatcttg ttcgattgga tgatccttcc gcggtttccc tttacgcgat tacacaaaag
    16741 agaacatggt ccgtcagaga tttatacagc gcgatgctca ctatgtctgc aaatgatgcc
    16801 gcggaaacac tgggagatcg tttagacgga gctaattttc ccaaagaaat gaataaccag
    16861 gctaaaaaat taggtatgtc gagtaagact acatttgtca gtgctagcgg acttgatgtt
    16921 gacggaaaat ccgctgtttc taccacaaag gatttatttt tgctatcatc taaattaatt
    16981 tccactcatc ctgaagtgtt agagacaaca tccaaatcta gtgtcaccac tgacaaaggc
    17041 gccaaacttg aatccaccaa tgactcactc ggttcgattc aaggcttaga tggactgaaa
    17101 actggattta cagatgaagc aggctattgc tttattggaa cagctgaacg tggaggaaaa
    17161 cgtgtgattt cgattgtcct agatgcggga actgcggaaa aacgatttaa agatacagag
    17221 aagctgatgg aggttggatt taaagaaaat taacgaatga aaagaacctc tctttcgctg
    17281 agaagttctt ttttaaatag ttcagcatca actctttaaa gcgcatagat acttttccat
    17341 gtatacatct ttatttttag aattatattg cataataaag cgtggatgtt ccaaaggtat
    17401 gattgtatca aaaaaatgat gctcctcatt tattttcgat aaaaaattaa aattctcgcc
    17461 gctgccaatg cagtaacaga ccgaagtatc tatcccgcaa tctatttggt tttgaagtga
    17521 ttctaaaata attggcttca gcgcctcttg tagtttctta ttctcataat agttgcaatt
    17581 aacctcattg ccttttgcat tcatacgaac aataccaagc gggcagacaa aattcatata
    17641 aaaatcagta taaaatgcct cacaaccgcc gtattctgtc ataacatcat ataaaaaatc
    17701 tgaggaagac tggtttatat aaaatttatc aataaaaata ccggtttcgt tttgaaggtg
    17761 ttttgcgtct tcaaaaggaa cgcctgtcac agcagaacct ctccgcgcgg gagaacttcc
    17821 aagtattatc cggcgcagtt tagtatcatt atagtatttc tgataaaatg tggtcgttat
    17881 tttttgcact agttcgcttt gatcaccaga atatgggtta acggtgcgat acccctccgg
    17941 caaatcaaac gaactattcg caagcgcctc attaaactgc aatattcgtt tagcaatagt
    18001 tgtattttca gtcatgtaaa ttagccctct ctttattttt atttcacaat atgccaaaca
    18061 tcctcaaata actccgcata acccgcttgc tcccacctgc ttgcaaaata aggattatga
    18121 aaataagtga acgccgtaat aatcgcgttt ccttggttcg ttcgaccgct cacttcttcg
    18181 gctttttgtg ctaaatgggc tacgtggttt ttcactaatt cttcattttg ttcaatataa
    18241 tccgtataaa gtaaaaacat ttttcggtcg gttttgtatc gttttttctt agtatcggcc
    18301 aagagccaaa gccagtcgtg aagcgcatca tctggtgttt gccctgcttc ctgtgtccaa
    18361 tcgaaaatct cccgcgaagt ttcctctaac caacgtagcg ccaatttttg aaataaatcc
    18421 tctttatttc gataatgctt ataaagtgcc gcatgtgtga cgttcaaatt acccgcaata
    18481 tcatacagcg tcgttttttc catgcctttt tcgtaaatga ttttctctgc catatttaaa
    18541 ataatttctt gtgatagtct cgccatttta acccctcgat tcaactcatt ctttgctttt
    18601 tattatacag gaaaacagaa aagttacaaa tccttgacaa agtaactaaa aggagtatac
    18661 ttccaactat aaagttacta aaattaaaaa aagtaaccat tttgaattta aaggagcgaa
    18721 tagattatga caaataaacg tgttgcattt attttagggg gttctggcgg tattggtaag
    18781 gcagtcgtcc aaaaattggt cgaacaaaat tttgcagttg tggttcatta ttcgggtaat
    18841 aaggctaaag ccgaggcgct tgttgaaaac attgtgaagt ctggtggaga agcgattagt
    18901 gttggcggcg atgttgctga cgaggcgcag atgactcgtg catttgattt cattgaaagc
    18961 cagtttggtg gaattgatgt tgtcgttaac acggcaggta ttatgaaatt aagtccgatt
    19021 gctactttgg atatggatga atttgacctg attcagcgaa ccaatgtccg gggcactttt
    19081 gtcgtttcca agcaagctgc cctcagagtt cgagatggcg gcgcgattat caatttctct
    19141 acttcggtaa cgcgaaccag ttttccgact tacggggcct acgttgctag taaggccggg
    19201 gttgagtcgc tcacattgat tctggcacgc gaacttcgtg ggaaagatat aaccgttaat
    19261 gcagtagcac ctggcccgac cgccactccg ttatttttga ctggaaaaga cgataaaaca
    19321 attgacaact tagcaaaagc cacaccttta gaacgcctag gacaacctga agatatcgca
    19381 gaaaccgtag catttttagc cggacctgca cgctgggtga atggtcaagt cattttcacc
    19441 aatggaggat tagcttaatt aaaaaaggag gaaaacagag ctatctggtt ttcctccttt
    19501 tattttattg gtctttttta atcgctaaaa caatcaatcc cgatgctaat aaagttaacg
    19561 ccaagaacag aaaagccgat tgataagagt tagtcgcgtt taccaaatcc cctataatca
    19621 tcggtgcaaa aaagccacct aaaactcctc ccgagtttat agccgcgtat tttgttgcaa
    19681 tgtggctctg ctgaaacaac ttgtgcggca atcccattag cgttgtaaag gccatgatta
    19741 ggaatatatt acataaacac aagcaaataa ccgatagcgc taattgttca aataaataca
    19801 ccccgtatac cgcgaacgcc ccaagcacac aaaatgcgaa aataataatc ggctcttttc
    19861 ctttgaaaaa acgactaatg aaatagccac cgacaactcc tgcaattaaa atacaaaggc
    19921 cagctaaaga actaatatag ctcacttcgc taatagaaat ccctctaacc tcattcaaat
    19981 aagaagcaag ccaacttgtt aaaccgtagt tcgctgcatt tataaaaagc gctgatagca
    20041 aaagaatcca aagctgttta tctttcaaaa gttctgagaa aggtactttg attttttctt
    20101 tttgagcatt tagatctatt ttcggcgctt taggtacgac aattaaaatc agaaagccaa
    20161 tcaaaatcac cgcaatacca atccagtaat atgtattgcg ccaacccact gatagcaaca
    20221 gttgcgcgat taacaatggc ccaataaatg ccgcaaaacc agaggaagca agcattgcgg
    20281 actgagcaaa acctcgcttg ttcaacggaa tatgaagtga aatataattg ctgacagacg
    20341 ggggataacc tgcgtgtcca agcgctccgg ataagaaacg aataacaacc aaaaataaca
    20401 aggaatagcc aaagccaaaa ataacaagaa atagcccgac aataataatt gataccgcaa
    20461 gaactggtcg tgcgccaatc cgattgttta aataccccat tggaatttga aaaagtgtgt
    20521 aaccaagaaa gaaggcactt aaaatcaacc ccttttgact tggatcaaat cctaaatcct
    20581 gagaaacagt cacaagcgaa attccaatag tatatttatc cacgtataca ctggtgtagc
    20641 ctataaatag aacaagtaac accattaacg aatgcttttc tccttttacc tgattcattt
    20701 gaattcactc cactcttcta tagtcccgcc aattgcaaaa gagcataacc agattctttt
    20761 tctgactatg ctcttttcaa agctattatc cattcaattt ataataatct aaaaccacgt
    20821 ccgcaaccga tttggcagca actaacaacg catcttcatc tatatcaaat tttggatgat
    20881 gattaaaata agcattcgaa gtatttttcg gtttcgcgcc aatatagaag aagactccag
    20941 gaattttttg taaataataa gcaaaatcct ctgatccgga aagcatgtcg tattcagaaa
    21001 tgcccgttaa gtactcgcca acaccttttt gcaaacttgc aactacttgt tctgttacag
    21061 ctggatcgtt gtaaagtggt gggtagtcgt tcgtgtacgt tagttccacc gttacaccaa
    21121 acatcgcttc cataccagca acaatacggt ggatttctgc atccatttta tcacggtttt
    21181 cagtattcat ataacgcaca tcgccttcta gctccactgc atctttaata acgttaaaac
    21241 tacctttacc atcgaaagaa ccaatcgtta taacgcccgt atcaaatggg ttcaaacggc
    21301 ggctcactac tgtttgaatg gccgtcacaa aataagcacc cgcgacaatc gcatcattcg
    21361 ccatatgtgg agacgaacca tgcccgccaa caccttgaat tttaagttta aaataagtgc
    21421 gaccagccat cgcgaagcca ctatgataat aaacttggcc gctttcacca aatggaaata
    21481 cgtgaatacc aaaaatttga tccacatcat ctaaaatacc agattcgaca acgcttttcg
    21541 ctccgccggg tggtgtttct tcggcatgtt gatgaacaat ttttatcgtt ccagggatgt
    21601 tttcttttag ttggattaaa caatctgcca aaacgagtaa ataagcagta tgtccgtcat
    21661 gaccacatgc atgcattacg ccaggttttt tagatttaaa tggtaattcc gtttgttctt
    21721 cgatgggaag agcatcaaaa tcggcacgta aagcaatcgt tttccccggt ttcccgcctt
    21781 taatcgttac aacaaccgca tgaccatttc ccacttcggt tgccatttcc acgtcttttc
    21841 ctttataaaa atcttggatg aactttgcgg tttctgcttc atggaacgat aattcaggat
    21901 gttcgtgcaa atgacgtcta atctgagtga tttcatcttt tcgttcctga agcatattca
    21961 ttaacttggt acgcatgata aatccaacct cctattcttt tgcggctttt aattcgagcg
    22021 cttttttcgc agacggtgtt gttatagcaa cggaaataag tgacacgaca caaaaaccga
    22081 cgttagttaa aagccccacc attgcggcta aatcaatatt tccagaaagt gcaatcacac
    22141 cataaatcgt agcagaaatt gccacaccga atgagccacc taacgaactt gccattttgt
    22201 aaataccaga tgctactccg actttatctt ctggagcatt agagatagct gtatctgtgg
    22261 aaggagttgc atacatacca agtccaatcc cgaataaagc aaaaccgata aacacaagca
    22321 ctgtataaag ggttcccgga ataaacgtca gcgccattaa agcaatacca acagccgtaa
    22381 taccagagcc tagaatcatt ggtttacgcg cgccaacacg ttgaagaatt ttttcaccaa
    22441 tacgaatcat tccaagcaca cagacaaggt aaccgataga aagtaaaccg gattggaatg
    22501 ctgtaaaacc gcgaccaatt tgcacataag tatttgcaac aactagtgtt ccagcagctg
    22561 catttaacaa gaagttggaa agtgtcgcac cagtataagc tttattttta aataacgaga
    22621 aatcaataaa tccgttcgct tgtcgtaatt ccacccggaa aaataatccc gcagaaataa
    22681 ggaaaacaac gagcattgta atagtaattg ggcttgtcca gccaaatgtg gaaccacgag
    22741 tgataataag atttaagcaa accattgcga taacaaaaag aacaagacca aatgaatcaa
    22801 attttgcttt tgtattttga acgactttac tttctggagt acctttaata agtagcattc
    22861 caagcagtgc gaatacgatg gaaataatga aaatccagcg ccagcccatg tatgttgcga
    22921 tagctccacc tgcgaatgaa caaatacctg atccacccca tgagccaatc gaccagtaac
    22981 taagcgctct ttgtctatca gccccttcaa aataagtttt cattagggca agggttgctg
    23041 gcataataca agcagctgaa agcccttgaa taatacggcc gataataagt aacgtcgccc
    23101 cttgagtgac aacaagtaac agtgaaccga tgatactaag aataagtccg atataagtta
    23161 atttcacgcg accaaatttg tcagccatac cacctgctac aacgataaaa atacctgaaa
    23221 atagcgcggt taaactgatg gcaatactaa gtaaatcaga ggaaattcca aggtcagatt
    23281 gcacggccgg aacgatattc accattgatt gggcgaaaag ccaaaacgtg ataaccccga
    23341 aaacaatccc aacaataagt ttatttgtac ctttatacgc tgttgaagtc attagttatt
    23401 ctctcctttt aagtaatcta caacacaagc tcccatggct tttgatgcaa ttaataatga
    23461 atcttcattg atgtcaaatt ttggatgatg atgcggataa aaatgcccat ctgccggcat
    23521 cgctcccaca tagaaaaatg agctcggacg ttcttttgca taataagcaa agtcttctga
    23581 tggtggttgc ggttcacagc gcacaacatc tgtaatttct ggaattttcg cccctttaat
    23641 agatttaaca acaaaatcag tcaaagcttc gtcattattt aaaacaggat aatcattttt
    23701 gtaatcaagt tcacaagtaa cgccaaacat tgcctctatt ccgctaacga tacgggtaat
    23761 ttctttttga ataatgttgc gtgcctcttc agacatagag cgcacatcgc cttcaagctc
    23821 aaccgcatcc ttgatgacat taaaactacc ttttccatca aaagaaccaa tcgtaattga
    23881 gccgacatca aatgggttta aacggcgact aatcaccgtt tgaacagcta ctacaaattc
    23941 acttgctgca acaatagcat cattcgctaa atgcggagat gagccatgtc caccttgacc
    24001 ttgtacctta agtttaaaat aagagcgacc agtttgaatt gcaccctcac ggtagaaaac
    24061 ttcacccgtt ttcatcgtag acatcacatg aatcccaagg acattatcaa caccatccag
    24121 cgccccgtct tgaatcattt gaatcgcgcc accaggagga gtttcttccg catgctgatg
    24181 taaaataact attttcccgg ttaattcttg tttcatttca ataagtgttt cgcccaaaat
    24241 aagcatgtaa gctgtatgtc catcgtgacc acaagcgtgc attacaccag ggtttttaga
    24301 tgcaaaagct agaccagttt cttccgttat cggcagtgca tcaaaatctg cacgaatcgc
    24361 aagtgtcttg cccggcttgc ctgtatcaat cgttactaca acgccattcc caccaacatg
    24421 cgtccgcaca tcgcagtcca tttctttata aaaatccgca atatacttcg ccgtattttc
    24481 ctcttgaaaa gaaagttcag ggtgttcatg taagtaacga cgaatttcta tcatgcgatc
    24541 tcgtttttcg tctagttttt gaaataactt ctctttcatt gtccaaacct ccatttttaa
    24601 tacttccgct ggccagaact tccgtatttt cactacaact taattataaa aaaaaccaag
    24661 cgaaaagaag tttacttttt tgcttagttt tagcttgaaa ttttcttctt ttgtaaatta
    24721 ctcaaaccaa tgtcaaaaat ccggtgctga agtcacaaaa aaagctcaac tgctagagtt
    24781 gaacttttta aaccgtactt ctaaactcat aaaaatgaat cgcattaata tctaaataag
    24841 cataaaacga ccaatcttcc gtaatcgttt catcactcac cgtaagtgta ggctgagagg
    24901 catccacaat atagtccaaa atctctttat ctagcccata cttactgttc agttgccaat
    24961 acttcgaata aagtgcccca ttgtcacggt cgaattgcca tttacagact tgataatcac
    25021 ccgcgtaaag ccctgtaagt ctaatatgca cttctttttg ttcttcctta atgaaccttt
    25081 cctccacaga ataacgcgga ttaatcgtcg cacagttcat caaaataagc tgataaccgt
    25141 ctgcgtgctt cgtcataata taatcttcac ccttagcaac cacaacaccc ttaagccttc
    25201 tcaaaaactt cactgcataa aacgccggtc gtttaccatt gaaaaagtgg aacatttcaa
    25261 ttccgtcaag actaatattt aatttgctat cgtccccttc atgaagttcc gtattaatcc
    25321 aaaagcctaa tgcgtctact tctggtacca aatctagcat cgttttcaaa actaatgctc
    25381 ctctgaaaaa agtcccgttt gtgtatctcg tattcccaga taacgtgttc cagtttacta
    25441 acattagcgg cttattgata tgatgatgtt tcaagaaagc ctttaattga agcgtttttg
    25501 acaaacaata atcctctgaa atcgaaaacg acttcatatc ctctttcgaa aaatctaccg
    25561 cttcattttg attcgcatta taggcgacaa agtccatttt atccgcttct tctaaaaacc
    25621 acgtatgtcg ttcaggcact gcatttttag acaatgaaaa tgggacaaaa tttccgactt
    25681 ggatagctgg aaaacgcgat tttatagtgt gatatatttt caaataaagt tttttcagtt
    25741 cttccttatc agcatatgta tttttcggtt caaaaaacat aaaatgccat tttgaaacaa
    25801 attcccgccc aaaaacctgc atacaatgct ttaaaaagtg atccaatcgt tcaaaaacag
    25861 ccgcctcatc gcctacaata tcttgatact ccaagcgaat aaacaattgt aaattttgct
    25921 gttttaaaaa agtgagcgct aaatccgcat tcgcatatgg agaagaagtt ggcactaatt
    25981 cgtccgtttc cgtttcaggc aagaacgtcg aacctctaaa caaatgacga ataccaatat
    26041 aattaatccc aatctcatca cgcgtcgtaa taatctgctt ttggacatta tctttaagca
    26101 cttctttaag ctcaccaatc gtcaaaatat tcatattctc acttaaacaa cgttcggtct
    26161 tttccgtgat atcaattttc tttttctcaa atggtgcttt atttaattcc ttacccggct
    26221 ccacatcatg ataaagtcgt gacaatttca ctaaaatttc cggagatggc acaatttgtt
    26281 ctatactagc gcccagctca gatgtcttat tgtctattaa caaattcgtt tccacatgat
    26341 gttccgctcg gtattcactt ggcgttagct caaaatgaaa cttaaatact tctgaaaaat
    26401 gcttttggct cgaaaaacca ttttttaacg caatctctgt aatactttcc gccgaatgta
    26461 gtaaatcttg aatcgcatgc ttcaatcgga cttctgtcaa atactgtaaa aaaccaagcc
    26521 ccgtcgtctt tttaaaataa cgtgataagt acgcctcact taaaaactct ttttgcgcaa
    26581 actcacgaag cgacaaggct tcatcaaacc gctcttccac ttctcgaata atgcgcgaaa
    26641 tccgtttatc attgacttct ttcctagcag aagatggaat tccttttttc aaaaaacgcg
    26701 taagtaataa taaaatttgg aacaacgccg attgcgcttc taatttattc gctcgtttct
    26761 tcgtcgccga agcaatcaaa agctcactca ccgacttcct caaagaccca acaacccgct
    26821 ctctccccgg gtcactctcc ttcgagaaaa atttaaaaga atgctgaaaa taatcctcat
    26881 aataatgcgc aaaaaatgta tctgaaatcg ttaaattaat aaataaatta tcttcatttc
    26941 cctcaattgt ataaaaggta ttgcgatcaa gaactaaaac atcgccttcc tgcaagtaaa
    27001 atttttgctc agaaaccttg attgttattt gtccagaaat agcaaatacc aatttagttc
    27061 caagtgatat ttccgacgtc agctgcttta tatgttgaat accaatcgta taatctttta
    27121 aatgagacac tcgattcacc ccttcgttta acttaatcgg acacttttat attatcatag
    27181 tcgtgaaaat taatcgctat cagtttttat gattgtttta gtcattaaac cgacacaatc
    27241 gagtcacata tatccggaat ttttgtactt ttgcgagaca aaatgataaa taaaacggcg
    27301 tataataaat gattgtagaa aacgaataag gagtgcgcca aattgaaaac ttctaaaata
    27361 ataatagctt cattagttag tttaaccctg gtttcaaacc caattttaac attcgcagca
    27421 acgaatgatg tgattgataa tacaacagaa atcactactg ataaagaaac aagcccaact
    27481 caaccaacta ttaaaaacac actcaaagct ggtcaaacac aaagttttaa cgactggttt
    27541 cctgatgaca attttgcttc agaggtagca gcagcatttg aaatgcaagc aactgacact
    27601 atcagcgaag aacaacttgc tactctaaca agcctagatt gccacaattc ttccatagcc
    27661 gatatgactg gtattgaaaa attaactggt ttaacaaaat taatttgcac gtataataac
    27721 attactactc ttgatcttag ccaaaacact aatttaactt atctggcatg tgattcaaat
    27781 aaacttacaa accttgatgt aaccccgctt acaaaattaa cctacttaaa ttgcgacacg
    27841 aacaaactca caaagataga tgtaagtcaa aatccattgt taacttattt aaactgcgca
    27901 cgcaacacct taaccgaaat agatgtcagc cacaatacac aattaactga gctagactgc
    27961 catttaaata aaaaaatcac caaattagat gtgacaccac aaactcaatt aacaacctta
    28021 gactgtagct ttaataaaat aactgcatta gatgtaagtc aaaataaatt actgaaccgt
    28081 ctaaactgcg acactaataa tataactaaa ctggacctca accaaaatat tcagctaact
    28141 ttcctagatt gctccagtaa caaattaacc gaaatagatg taaccccgct tacacagtta
    28201 acatattttg attgtagcgt aaatccttta actgaattag atgtgtctac gctttcaaaa
    28261 ttaactacac tacactgtat acaaacagat ttattaga
//
LOCUS       DASDXX010000014        27038 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.014, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000014 DASDXX010000000
VERSION     DASDXX010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 27038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27038
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.014"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..161
                     /locus_tag="U0280_000505"
     CDS             <1..161
                     /locus_tag="U0280_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270464.1"
                     /translation="ETIPDEIDGIKITREDPEDFDTRFYFDASVDSAAMTVIGNIHEN
                     PELMEVAE"
     gene            158..367
                     /locus_tag="U0280_000506"
     CDS             158..367
                     /locus_tag="U0280_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270465.1"
                     /translation="MNDKKVRFYVSTGMHGSLETETFLLKADLNIEFDILTPEQLEKE
                     ITESYDDWLANNIDSGWSIEKEVEE"
     gene            364..552
                     /locus_tag="U0280_000507"
     CDS             364..552
                     /locus_tag="U0280_000507"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270466.1"
                     /translation="MKKYELIMTREEVYHLHRVLMQDIILSTWGVSTKDPEDEEAFLA
                     HIELSKGLARKVTRSEVK"
     gene            552..884
                     /locus_tag="U0280_000508"
     CDS             552..884
                     /locus_tag="U0280_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270467.1"
                     /translation="MPGLIAKQPNGLYCRISTVVEAQTHHDMTKEELEYYLINERSLD
                     INLVTLDDWLAFYEVDFNVAIKQLGSGSGNLTFEEAKAWLIEVGYQHADKFMEKIAYK
                     WDEWEEGK"
     gene            881..1156
                     /locus_tag="U0280_000509"
     CDS             881..1156
                     /locus_tag="U0280_000509"
                     /inference="COORDINATES: protein motif:HMM:NF019467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM2270468.1"
                     /translation="MKKITQEYVEGVKDYNGLTVIKAPVVSEAVADWFEANKDNLGLE
                     IWMYIYNFDKHKNDCDSFCMFMNDKSGKQLETLISMQYGYYVQKEES"
     gene            1476..1727
                     /locus_tag="U0280_000510"
     CDS             1476..1727
                     /locus_tag="U0280_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3850 domain-containing protein"
                     /protein_id="HEM2270469.1"
                     /translation="MTVHKLKILPEFFEKKRTLVKAFEIRKNDRNFEVGDTLVLQEFD
                     NGEYTGREYWEDVVYITDYLQKEGIVVMGTLPNEREYPF"
     gene            1739..2299
                     /locus_tag="U0280_000511"
     CDS             1739..2299
                     /locus_tag="U0280_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270470.1"
                     /translation="MYKTEKRTLRQNKMIHALISDIVKHTYNDFEATKPRSFSNDCRV
                     VKETLKVAYAAEANLPGDFSTAKLSKIQARDFISSIIEFCFQFDIPLSASGLQMTDDI
                     NRYLFLCIKYRKCAVTGRRGEIHHVDPVGAGRDRRNYDHSKSRLICLSREMHTEAHQI
                     GWLTFKSKYHVDGIILSPEAVKELNI"
     gene            2380..2802
                     /locus_tag="U0280_000512"
     CDS             2380..2802
                     /locus_tag="U0280_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270471.1"
                     /translation="MALFELPQIDNVRTKRNVIRALEKYKIMRVRLGERRMPKLTSTL
                     TIVPPSFNNEFHSTTEESAIWNVDAVNEAKAYVKLIDHHINQLPERSRQVILTKFIEE
                     NSDYEAMLAIHVSHSQYKEEKRKAIERLAYQLNIVVEK"
     gene            2815..3582
                     /locus_tag="U0280_000513"
     CDS             2815..3582
                     /locus_tag="U0280_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HEM2270472.1"
                     /translation="MNNLAVLDKNNTLNSREVAEMVEKRHSDLLRDIETYIRYINQNA
                     KLRSDDFFSESTYQAGTGKDYKCYEITKMGCEMIANKLTGAKGIQFTALFVQKFNKLE
                     AKEMQTFYIPGTYAEALTLAAKQAELNEQLMLENEVKTQTIAEYEPKVSYYDQILKSP
                     GLITVTQIAADYDLTAHKLNKILYEEQVQHKVGGQWILYKKHMNLGLTKSETVSIVHS
                     NGRLGTKVNTKWTQKGRLFIHEILENVGIQAVIDKDI"
     gene            4111..4404
                     /locus_tag="U0280_000514"
     CDS             4111..4404
                     /locus_tag="U0280_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270473.1"
                     /translation="MKNFVYVVANVSDGNSLIDFFVKTKSNYITEINYREGYIILSNE
                     CWYFQVMNESDFADVGNVDGYRFSQKAKISLSKTGNYQTIRKKLSDLYKESSK"
     gene            4401..5738
                     /locus_tag="U0280_000515"
     CDS             4401..5738
                     /locus_tag="U0280_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HEM2270474.1"
                     /translation="MNIQEIEVSKINPAAYNPRIDLMPGDLEYEKLKKSIEEFGYIDP
                     LIWNERTGNLVGGHQRYKILLEGKPENLTVSVVNLDINQEKALNIALNKIEGGWSTDK
                     LGELLKSINDEEMLNLTGFSAIEIDELIKEFELPPATVDKVKENPLDSNLFESFLFPP
                     FSYLDSKTKRWRDRKDQWKNLGIRSELGREGNLTFASSLRSSSLTGTSIFDPVLCELA
                     YRWFTPGESAKIYDPFAGGSVRGIVAKVLGHEYTGIDLRKEQVEANHINAKEIGLDGI
                     NWITDNSLNADKYIEDNAMDLLFTCPPYFDLEVYSDNKEDISNMEYEEFIKVYSEILD
                     KGANKLKDNRFAIVVISDVRDKNGFYRDLTGLTKSVFEKNGIYFYNDLILLNSLGSGA
                     LRARRNMRNRKLVRIHQNVLVFYKGNPDEIQEHFPILEVLEDNLEEALESIDI"
     gene            5786..5983
                     /locus_tag="U0280_000516"
     CDS             5786..5983
                     /locus_tag="U0280_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270475.1"
                     /translation="MREDIQRLKDKADTAKMKYHRNLIDRETAKKQIIPYAEAFNSRS
                     KEIAKKYNQKPKLLSVAAFLR"
     gene            6113..6343
                     /locus_tag="U0280_000517"
     CDS             6113..6343
                     /locus_tag="U0280_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270476.1"
                     /translation="MKKENERSIDENLNDDLLDLEISKALEEAKTDEEYKKIIRATLG
                     KWLNNLQEGNIRLESVNDLKTLIEADRLLRRD"
     gene            6371..6604
                     /locus_tag="U0280_000518"
     CDS             6371..6604
                     /locus_tag="U0280_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270477.1"
                     /translation="MTLIFWTKNGQEMEFDLVENVEIDEKIITFDYYGEGEKRGVAFI
                     LNNLAGMAVEDENSESESKDGASWFKVYRGYVK"
     gene            6641..7510
                     /locus_tag="U0280_000519"
     CDS             6641..7510
                     /locus_tag="U0280_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270478.1"
                     /translation="MARKRDPRRIEAKNMWLESGGKMKLVDIANKLGCSSNQIRKWKS
                     TEKWSIDDEIESVPKSNSNVTNEKERYHKLKGNSNAIGNRGGAPPGNGNAVGNVGGSA
                     PIGNKNAVTTGEFETLSWEFLTEREQQLYESMDGNLVTHINQTIRELEIRKRRMMERI
                     ANIEKSMSDIERSTLKQLREKEYIGEKNGKKVILHRQELVTVEERERVTAKIDRILSI
                     ENSLNNVTSQLIRAIKQQSDLEQAEVKKGLIRSQTSLNKERIIKPEAASTSPDFSQMS
                     TEELKEYAASLKQ"
     gene            7488..8948
                     /gene="terL"
                     /locus_tag="U0280_000520"
     CDS             7488..8948
                     /gene="terL"
                     /locus_tag="U0280_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEM2270479.1"
                     /translation="MLLASNNKEIDREYLYDEAVREIARREFAEFFFLSHGKRYNLLR
                     HQKLIADKLQKIIDGEQKHYIIEIPPQHGKSTVITETFPAYFLMRNPDKLAMVVSYSE
                     ELFKKFGRKNREKFRMYANDLFGLNISSMSSSVSNWGIEDHLGELYSTSILGGATGRG
                     SDLLIVDDPVKNRADADSKTMRDKVYSEWQDTFYSRLSASGSVIIIMTRWHEDDLAGR
                     LLKEMSLPWEEIKIPAIAEENDLLGRKIGEALAPEIGKDEKWAAQTKEVTGSRGWTAL
                     YQQRPSPADGNIFKRHWIKYYVPDAEFKKKYGLGDEVKILPRLFDKSAQSWDLTFKDT
                     KNSDFVAGHVWKRKQGEFFFIDREHDRMDLPASINAINRMTTKHPDVIAKYIEDKANG
                     PAVMQVLKGRLTGMIPVDPEGGKEARANAVSPLFEAGNVYFPHPLYKPWSEDVVEELV
                     AFPNTSHDDDVDALTQALVKLMIGQQSLLDRYKNLM"
     gene            8962..10347
                     /locus_tag="U0280_000521"
     CDS             8962..10347
                     /locus_tag="U0280_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HEM2270480.1"
                     /translation="MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQVPGNGQ
                     KLDIKACENLYASNSIAMNIIDIISEDMVRAGWSLKTDNKEIKKNIESKWRKLKTKDR
                     FQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKVTQLYL
                     NQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKG
                     RSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDTLNKDDKANLTAMLDFMFR
                     TEALAIIKGDEQLTKESTNVSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQY
                     DVMNYYARVSSIQENRLRPQLEYLTRLLMWASEDCGPSIDPDSFEWAIEFNPLWNLDS
                     KTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLV
                     YDAYAKKSADG"
     gene            10340..11749
                     /locus_tag="U0280_000522"
     CDS             10340..11749
                     /locus_tag="U0280_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2270481.1"
                     /translation="MVKRRVPATRYPHNLEKSYTKQLVKLSTALSDMFLHEFDTSISA
                     ILKTSQNRSDAFREDGISDAVQAVLNKVKALSFGLFNPRDKYSIASKHVKAINTTNKS
                     QIGNQVRSQGIEPTQSEPWLSEFMDASIAENVSYIGSIADEFNAKTEQIILRGVKNGQ
                     SLKDMRDELVTQVGTSKNKAEFIANDQTGTIFGQMTAERHKKAGIPGFTWRDSGDAAV
                     RPSHHARNGKVYSYDDPTAQIPGTDYRCRCTAGPEFDESVVKAATNERKQQELEDKAT
                     LKNAYSEVAQAAQKAPDNVKDLISSNITANSFEIVRDNNIAYAYRPSTKKIIINPSNK
                     AIKYYNKQEILLHESGHLIDYAKYKSWENKSFTISTQIEKKVAKWDEINELFSHEKWA
                     NDDYFSDICSALTENRVKGNAGHAASYWNRKGSIEKEIFANLFAMLAMNKQESIAMVK
                     KQFPMIYGSFIKMLEGELK"
     gene            11746..11916
                     /locus_tag="U0280_000523"
     CDS             11746..11916
                     /locus_tag="U0280_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270482.1"
                     /translation="MINYKKWLDSMMSTEDGKILFERYKKLYGHYPPFLLDATEKEQW
                     DEIKRLIKDADK"
     gene            11965..13074
                     /locus_tag="U0280_000524"
     CDS             11965..13074
                     /locus_tag="U0280_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HEM2270483.1"
                     /translation="MKVQRFDKSFITDSNMQVTKEGYLTVKAPVTRPGVFPYQRADGS
                     IQLEAKLPENLFASETIQSLNAKPVTNDHPNEPVNASNHQKYAKGTTHTDACVSDNKL
                     FVSFTITDSKTIQAVQDGKRELSLGFESEVVKESGTYAGERYDAVQKSVLVNHLAIVD
                     EGRVGPEIAIRGDSAAFMIDSKNTKKQGGNKMPVLKIDSKEYEVDSVVKSRFDALEAK
                     LDAANAKAAKVDALEGERDGLKTKLDKAESDLEEANKNTMTEEDIENAVTERAALLDS
                     AKVMLGDSFDFKGKTAREIKEAAIKTSNDSFDSKDKSDEYVNAFYDAMTVTADAKGYT
                     ADANFNKGKPDPKELEEIEKKKAARQNFGKKGDNK"
     gene            13074..13526
                     /locus_tag="U0280_000525"
     CDS             13074..13526
                     /locus_tag="U0280_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270484.1"
                     /translation="MSIPTGQEYMMPELGLGKIASYQRSQVDSAAVKANIKFGQAVQV
                     LDDEASPLEATGDFYGVAVAKNYVDEYTDDKVGVYKPSEAVPVLRQGTITVIVDEDVK
                     SGEKAVVNTDTSNFLPSTTAKTTKTGVIGVFKSTTSKDGLAKLEINLP"
     gene            13547..14452
                     /locus_tag="U0280_000526"
     CDS             13547..14452
                     /locus_tag="U0280_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HEM2270485.1"
                     /translation="MPGKITATIEARDLQAIDNVIYEPKQEELTARSVFPQKFDVNEG
                     AESYSFDVMTRSGAAKIIANGADDLPLVDVDMVRKSVPIYSIGIGLSYTVQDLRAARM
                     QGTTVDAAKAATVRRAIAEKENSIAFRGEKKYAIKGAFEATGIQIDVSPTTGVGNVSK
                     WEKKTAEQIIDEIGAAHTKITVLPGYGTASLKLCLPPKQFELINKKRYSNEDSRSVLK
                     VLQDNAWFSAIVRVPDLAGMGTSSSDSFAVIHDSNETAELIIPMDITRHPEEYSFPRT
                     KVPFEERTAGVVVRFPAAIVRVDGI"
     gene            14475..14861
                     /locus_tag="U0280_000527"
     CDS             14475..14861
                     /locus_tag="U0280_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270486.1"
                     /translation="MIIENKGDYVRFLGKVRLVPGTNNIDNEHAEELEQALKHPLNIH
                     LIESDELKVPDNLQQDSSLNDFNATKAALLVKDTFDLGALNEFLAEETTNGNRKTVID
                     AINKQIESISNPPQEERYVPEEDFGK"
     gene            14873..15208
                     /locus_tag="U0280_000528"
     CDS             14873..15208
                     /locus_tag="U0280_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4054 domain-containing protein"
                     /protein_id="HEM2270487.1"
                     /translation="MKTDVSKLKLTASALASVSDDSLQVHIDDSYLEVQEKGFPEKFE
                     ERANRYLAAHLATLANKNVKSEAVGSLKREYYEVKGDSGLLSTEYGQEYARLLKEANG
                     GSGISMVVV"
     gene            15208..15807
                     /locus_tag="U0280_000529"
     CDS             15208..15807
                     /locus_tag="U0280_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270488.1"
                     /translation="MKVTTDKSTMNKAIRELDQLDRYSLQIGLFGEDDSFIQMIAGVH
                     EFGLTIRPKGKYLTIPTPEAGDRRARDIPGLFKPRGKNILAVAGPDGKLTVMFYLKKE
                     VNIPERSFLRSTFDEKSNKWGELFEGWIDDIIHGKLSAEQVYNRLGAKIVDDIQMKIV
                     EIQTPAKSAATLARNPRKNNPLIVTGKMKNSVTWKVMKS"
     gene            15807..16181
                     /locus_tag="U0280_000530"
     CDS             15807..16181
                     /locus_tag="U0280_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270489.1"
                     /translation="MEKMVFQSLLDSFGVPLTVLKKQEKGGEFVNGEWVVSQLDETSK
                     IEVNEPFVPSSLMTQMPQTSAYMAARYEKYEMIWFSSQVLPLKSKVIHKGISYSVEDA
                     IPFTDYSDVTQYGCKAVSVSAK"
     gene            16171..16653
                     /locus_tag="U0280_000531"
     CDS             16171..16653
                     /locus_tag="U0280_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270490.1"
                     /translation="MPNDGYDYGILVKTLIGAVNELSGGLQLIESASGGEQPEYPFCQ
                     YTITSPYIAISPDIVEGEQFEIVISLTWRALSGHQALNLANITNKYFRSQKGRFFMQE
                     NGGIVVVSVQNSGLRDTFISIEYERSAGIDLRLRVVDSYSSEIQEIDNISFTNENLGG
                     "
     gene            16658..17653
                     /locus_tag="U0280_000532"
     CDS             16658..17653
                     /locus_tag="U0280_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3383 family protein"
                     /protein_id="HEM2270491.1"
                     /translation="MVETITDVRVHISVLYPSPRIGLGRPAIFVKGTAMGYKEYTTLE
                     ELKDTFADTTEVYAKAKAVFLQKDRPDTVAVITYEDTKLLEAAEAYFLKSWHFALLAE
                     FKAADALALSNLIEEQKFKFAVFQVTAVADITPLAKNTRTIAIVHSKTGEKLDAALIG
                     NVASLPVGSATWKGRHGLTGITSEELKVSEIDAIQKVGGMCYIEKAGIAQTSEGKTVS
                     GEFIDSIHGDDWIKATIETRLQKLLTETDKLTFDARGIALLQSELTTVLNEGFANGII
                     DSNDETGEPNFSITALQRSDLNDDDIAKRNYKGLSFRYKRSGAIHSVDVYGEVEV"
     gene            17670..18068
                     /locus_tag="U0280_000533"
     CDS             17670..18068
                     /locus_tag="U0280_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270492.1"
                     /translation="MSEVMATYDANTVSTIINGISIFGFSDGDMVSCSKDSNNVEIKS
                     DAQGNSSAAVNNDKMGTIKVDLAQTSPCYPKLIDIANRQLKVPIYVINGKEKIGGSMA
                     FIEKLPDAGFGKSVGTRSFTFKVLDYTHTA"
     gene            18121..18477
                     /locus_tag="U0280_000534"
     CDS             18121..18477
                     /locus_tag="U0280_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270493.1"
                     /translation="MAEKKNNATKSDVAAAQAAQKIPKAEKKPLDKFGKKEVFKASDK
                     VEYTFQFPGTRAAQAILDESKNGYGVIVDSVYYERIMKDVIVEPLGLDLDYWDEHEGY
                     REVMNAADNFLGGLLN"
     gene            18654..23684
                     /locus_tag="U0280_000535"
     CDS             18654..23684
                     /locus_tag="U0280_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEM2270494.1"
                     /translation="MSGALRKTTIEIDWKINNQMLQKADEETDRIVRSADKMERNFNQ
                     SARSVDGTTRAIHKQSNEVRESATRVDKLDKNFKEAKNSANQFGNSAKGAVDKTKNSV
                     DSAKNSVNKLDNEIDKTTKNANSKFSALKTTIIAVGSALLVAGGKAMFNYASDTNESL
                     NKVDVAFKGNAKNVKRWSKTTLDNIGLAQGTALDLAATYGDMSTSMGLNTQEAEKMST
                     SMVDLAGNLASFKNIDIDRANTALNGVFTGETEALKSLGIVMTQTNLEQFALETGAGK
                     VAKSSTEVTKQNIAREKAQKKLNEAIKEHGKNSLEAREAQNKLQEIQAKTSESAKVNL
                     KDMKQDELVRLRYNYVMKQTTNAHGDFKNTSDQAANASRVFSESVKELASNAGQFLLP
                     VITPLIIKASDFTKKLSDIPSAVKGMKEKFKPAFEVFESVGDFFKKDLIPSAKELAKS
                     MGPGFIEGGVLAFKGLGIVLNTTVIPAFKAVTKFTRENPDSMKRIAKYATVGVAGFLG
                     FKLVKNTIDKVTVAIGKMNSKLLSIGPSAAAGATEANVAMSTIGTTTNGAGGVVLPGG
                     KGKGKIKLFSKATAGLKSMGKFGKLASGVGVLGVGLSATELIGMNKDNAGEKTGGFGG
                     SLGGMAGGAAIGTAIAPGIGTAIGGAIGAFAGTALGKELGKYVQKEGPKILDKFKTGW
                     KGLSKIAEEHPILGANINVINKTIDAAKKGIKAVGDTHKAVWNISKAMVADPLKIDAG
                     GKGVSKDSAKAMNKYLSAEQKLQNDSTSRIVDGKSISGNEYKENMKTHDNMSIQLVNA
                     TDKKSVKANNDWDRLVASGAVSKDVASAKKHTNNETASINKADIKKNTEELKRLEKSR
                     FEEQRKIEENAAGAILKIKENAKKKGVKLSKEEKVEIEQINKDKVTAIQVSESTYSKK
                     SAEIQKKQRKEATIALSKSAKEQKIILGNLENSKSEMSAKAAASVVKNSAKQRNATVK
                     EANKEFKDTKRILDEKRFVTGEIGEKEYREAIKQAKKKKDGTIDEAEKMHKEVVNQAQ
                     KQAKGHLKEVDWETGETLSKWDQFKKATSETFNSIKDAALGKWNELSSATVNIFGGMK
                     DASLRVWDSFKTNLYKMVNNVITAVNKVLSFFSIGSIPLLGNGNIGASQENKLSAKDK
                     KTYHSTSQSGNLAMNYTGSDSAAGQIMAGEEGFEIAYNKNSAQARILGKNGPEITTVA
                     PGTKILNHAESKKMMSGGMGAGTVLPGFAKGTNGAVESLKSLGSNAIDSVKNAGNKVK
                     DIASSAWDFATDPVAGVNKLMAKYNKLPNNSPMANMAGGMFKYFGKGAGDWLKEKLAD
                     VFMTSDGGGEGGGMFSPHFGSPFRMTSGYGPRTVFGKQEFHKGIDYGAPTGTPLPAQY
                     GGKVSRAGTAGGFGNLVSITAGKGIENLYGHLSKILTSAGSVVKAGQIIGLVGSTGRS
                     TGPHVHYQVNQNGKPVNPSSSLGGGSFNGKGGSKAVNGWVQQAIGLTGVPASWSNALA
                     TIAMKESNGNPNAVNNWDINAKRGMASQGLMQTIPATFNAYKMKGHGNILNPVDNIIA
                     AIGYIKARYGTVFNVPGIKALASGKAYKGYKRGGRPPVNETVLVGEEGPELFETDTAG
                     TVHTAQKTKQMLNKSSSGTTINFNPTINITVEGGSSESESSIRKTVRAEMEKLFEKLV
                     GIYSPGEV"
     gene            23690..24238
                     /locus_tag="U0280_000536"
     CDS             23690..24238
                     /locus_tag="U0280_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2270495.1"
                     /translation="MVATIGSVKLVNTNESESSPFTITDNPVETGSPVSDHVQRETKT
                     LEISGFLLGATAEKDYATLKSYAEKGTIVSFRGRVYFKNVLISNLSKSYNTIKNGFEI
                     TVSLRDLRRASTPWVRKKKKSSGKKQSVKSKKSPGTYITVKKGDCYWKWWKRYGTSIA
                     QLRKWNKWPDRRIPIGKRARVK"
     gene            24238..24609
                     /locus_tag="U0280_000537"
     CDS             24238..24609
                     /locus_tag="U0280_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270496.1"
                     /translation="MAIRNYIPVELDNIPELFEFDFDDGKSFLFGINYAESQDLFSVD
                     LYSIEGEPIALGERLVLNERLWADIIDDRLPSVDLVPLDESGKETKITKDNFTKTVFL
                     YFDDLAPEMELPTLDNEVSMI"
     gene            24615..25421
                     /locus_tag="U0280_000538"
     CDS             24615..25421
                     /locus_tag="U0280_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270497.1"
                     /translation="MLWMREIYVHINNGSEYATIHEKNEASGSLKINFSIPFSDEPKP
                     AECEVVIYNLSRNSSNKIKKGSTISVTAGYQGDKGLLSQGKVTKVSTVPSGVDKITTI
                     KFSEGVDYSDKKDVNITFKKGTSAKSIIQRIATKAGIKIYQIKLPTNKIYKSGYTADG
                     DALSVIEEIVKDCKAAIYYRRGNLVIRSIKSGDDERFTLNSSTGLISSPERLENDEYS
                     GWSFQSLLQHRIATASIITLKSKTVNGTFRVKNGMHNYDGSTFTTQCEVV"
     gene            25422..25760
                     /locus_tag="U0280_000539"
     CDS             25422..25760
                     /locus_tag="U0280_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270498.1"
                     /translation="MAQDTKFFDSFIRLVNSSVSVLLMCRVVNYDASNKRADVQPLNL
                     KPNGAKRAMILDALVLKHTEEDISEGKIVAIVFSDCELDNINGSTDFKPESSRQHSVN
                     DAVVVGVWDV"
     gene            25757..26119
                     /locus_tag="U0280_000540"
     CDS             25757..26119
                     /locus_tag="U0280_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2634 domain-containing protein"
                     /protein_id="HEM2270499.1"
                     /translation="MKDLLIDSNGDIVVSDNDILMTDGVNDIVQCVRMILQTREGEFY
                     FDENSGMNHENLFTKKPNFDYIKQDVITAIEEQEERISSVDSVLFDFDKDTRKLHVSI
                     KMTGLDGPVSVEEVILNA"
     gene            26112..>27038
                     /locus_tag="U0280_000541"
     CDS             26112..>27038
                     /locus_tag="U0280_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEM2270500.1"
                     /translation="MLDEHGFKRKTYDELLTDMESKAKELFGEDINLSSHSALGVFLR
                     IIAWFMSLIHELAERVYNSGFISSADGVQLDRLGSNISVLREPAMPAVVTLELTGNAG
                     YTIEEGVQFKTKNDVVFEMIDVVTLDDKGHGIGQAISQIYSDKANVPANSITVVAEPS
                     EDILTVNNPNKADGGSEKENDTSYRARIRLATSASPGPPVNGIISALNQVSGVRSVSI
                     IENNSIDLDAYNNPAKSVHIYCLGGIDEEIGEAIFNSVAAGIQTVGKVTVKVKDLSGF
                     EHSVYYDRATSLSIYAHIIVDVNSKFEDDGGDV"
BASE COUNT         9687 a         4187 c         5998 g         7166 t
ORIGIN      
        1 gcgaaacgat accggatgaa atcgacggaa ttaaaattac aagagaagac ccggaagatt
       61 tcgataccag attctacttt gatgctagcg ttgattcagc agctatgaca gttataggca
      121 acatacacga aaatccggaa ttgatggagg tggcggaatg aacgataaaa aagtaagatt
      181 ctacgtttct actggtatgc acggatcgct tgaaacagaa acatttcttt tgaaagcgga
      241 cttgaatatt gagttcgata tattaacacc tgaacaatta gaaaaagaga ttacagagtc
      301 ttacgacgac tggttagcaa ataatattga ttctggctgg tctatcgaga aagaggtgga
      361 ggaatgaaaa aatacgaatt aatcatgacg agagaagaag tttatcatct ccatcgtgtc
      421 ttaatgcaag atataatact cagcacgtgg ggggtaagca ctaaggaccc ggaagatgaa
      481 gaagcttttt tagctcatat agagttgagt aagggtttgg caagaaaagt tacgcgatcg
      541 gaggttaaat aatgccagga ttaattgcta aacaaccaaa cggattatat tgtcgaatat
      601 caactgtagt agaagcgcaa acgcatcacg acatgacgaa agaggaatta gaatattatt
      661 taattaatga aaggtcatta gatataaatc ttgtaacgtt agatgattgg ttagcattct
      721 atgaagtcga tttcaatgta gctattaaac aactcggttc aggttcaggg aatttaactt
      781 ttgaagaagc taaagcatgg ctgatagaag ttggttatca acatgcagac aaatttatgg
      841 agaaaatagc gtataagtgg gatgagtggg aggaaggcaa atgaaaaaaa taacacaaga
      901 atatgtagaa ggcgtcaaag attataatgg attaacggtg attaaagcgc cagtggtttc
      961 ggaagctgta gctgattggt ttgaagcaaa taaggataat ttaggattag aaatttggat
     1021 gtacatttac aattttgata aacacaaaaa tgattgtgat agcttttgta tgtttatgaa
     1081 tgataaatca ggaaaacaat tggaaacact aatatctatg caatacggct attatgtgca
     1141 gaaggaggaa agttaaacgg aaatggattc taaaaataga gataacaaaa gtataggagg
     1201 acgaatgtat gggcgaaaca actgaaatga ttttagaggg tattttgtgt gaaaattgcg
     1261 gagtattcat agatgatgca aatccgggat atccgagaac atgtgaagat tgcgaggaag
     1321 ataataatga aaaacggtaa aaagttaacc agaaaccaag caatgatgct aaaaaataat
     1381 ggtcttaatc cggataattg gctcatagta aaaaatctta ataatcgaat ggagatagta
     1441 caccgagaaa ccggaaatac aaaggtgatt tataaatgac agtacacaaa ttaaagattt
     1501 tacccgagtt tttcgagaaa aaaagaacac ttgtaaaagc gttcgaaata agaaagaatg
     1561 atcgtaattt cgaagtgggt gacacgctgg tattacaaga atttgataac ggggaatata
     1621 ctgggcgaga gtattgggaa gatgttgttt atattaccga ctacttgcaa aaagaaggaa
     1681 ttgtagtcat gggtacacta ccaaatgagc gagaatatcc gttttaaagg gtgatgacat
     1741 gtataaaaca gaaaaacgaa cattacggca aaacaaaatg attcatgctt tgattagtga
     1801 catagtaaag cacacttata acgattttga agctacaaag ccgagaagct tcagcaatga
     1861 ttgccgagta gttaaagaaa cgttaaaagt agcgtatgca gctgaagcga atttaccggg
     1921 tgatttcagt acagcgaagt tatcaaaaat acaagctcgc gacttcataa gttctattat
     1981 agagttttgt tttcaatttg atataccgtt atccgcatca ggactgcaaa tgacggatga
     2041 tatcaataga tacctgttct tatgtatcaa atacagaaaa tgcgctgtaa caggtcgtag
     2101 aggcgaaata catcatgttg atcccgtagg tgctggaaga gatagaagaa attatgatca
     2161 cagtaaatca agattaatct gtttatctcg agaaatgcac acagaagctc accaaatcgg
     2221 atggctaaca tttaaaagta aataccatgt tgatggaata attttaagtc cggaagcagt
     2281 aaaagaatta aatatataaa aaaagccaga gcgaccgctc cggcgtggaa tgtgattcct
     2341 agacaaaatc attataccac aatggagggg ttgcgtgtga tggcgctgtt cgaactacca
     2401 caaattgaca atgttagaac aaaaagaaac gtaataagag ctttagaaaa atataaaatt
     2461 atgagagtta gactcggcga gagaagaatg ccaaagttaa cttctacatt gaccatagtg
     2521 ccaccatcat ttaataatga attccattct acgacggaag aaagtgcaat atggaatgta
     2581 gatgcagtaa atgaagcaaa agcatatgtt aaattgattg atcatcacat caaccaactt
     2641 cctgaacgga gtaggcaagt gatactaact aaattcattg aagaaaatag tgattatgaa
     2701 gctatgttgg ccatacatgt aagccactcg caatataaag aagaaaagag aaaagcaatt
     2761 gaacgtctag cctaccaact taatatagta gttgaaaaat gaggagggaa cacaatgaat
     2821 aatttagcag tattagataa aaataataca ttaaacagtc gtgaagttgc tgaaatggta
     2881 gaaaaaagac actctgattt actgcgtgat atcgaaacgt atattagata tatcaatcaa
     2941 aacgcaaaat tgcgttctga tgattttttc agtgaatcta cttatcaagc tggcaccggg
     3001 aaagattata agtgctatga aattacaaaa atgggctgtg aaatgatagc gaataaatta
     3061 actggggcaa aaggcattca gtttacagct ttatttgtac aaaagttcaa caaattagaa
     3121 gcaaaggaaa tgcaaacttt ctatatccca ggaacttacg ctgaagcact tacacttgca
     3181 gcaaaacaag ctgaactaaa tgagcagtta atgttagaaa atgaagtaaa aacacaaact
     3241 atagccgaat atgaaccaaa agtgagttat tatgatcaga ttttaaaatc tcctggatta
     3301 ataactgtta cgcaaattgc agctgattat gacttgaccg cacataagct caataaaata
     3361 ttatacgaag agcaggtgca gcataaagtt ggtggtcagt ggatattata caaaaaacat
     3421 atgaatttag gtttgactaa atcagaaacg gtcagcatag ttcacagtaa tggacgtcta
     3481 ggaacaaaag taaacaccaa gtggactcaa aaagggagat tatttataca tgaaattctt
     3541 gaaaatgtcg gaattcaggc tgttatcgac aaggatattt aaaaaaccgg ctttttaccg
     3601 gataaaatta aactttttgc tgacttttta ccggcttttt accggacaaa aaacaaggaa
     3661 ttccgtggta agatgttatt gtcaagaaaa taagaaatag gagctggtaa ttatgaaaca
     3721 tgaaatgact aaatatagca tggacggaaa acgatatgta tcatcgtggc tacaggtaaa
     3781 tatttttggc aaggcattat gctttaatca taaatcaatc gcaatttaaa aatatatagt
     3841 ttgcccagaa agaggcattg tatcttatcg ttggtctgat atgagacgca tcatatccaa
     3901 cactcgtggc ggaacaggta gacgcattgg aggtaagaac taatatggct aaggagcgta
     3961 agccttagct taagaaacct atagcaaaaa ttacttagtt catgcaaggt gcaaatcctt
     4021 gccgagtgct ttgaacgtca atacctccat acccccaggg cagatacgtt ctgatatgga
     4081 ggttttttta tgtagaaaag gagagaacgc atgaaaaatt ttgtgtatgt tgttgcaaat
     4141 gtgagtgatg gtaacagctt aatcgacttc tttgtaaaaa caaaaagtaa ttacattacc
     4201 gaaataaatt atcgtgaagg ttacattatt ttatcaaatg agtgttggta ttttcaagtt
     4261 atgaatgaga gtgattttgc tgatgtgggc aatgttgatg gttatcgatt ttcacaaaaa
     4321 gcaaaaatat ctctttctaa aacaggaaac tatcaaacga tacgcaagaa attaagtgat
     4381 ttatacaagg agtcgagcaa atgaatatcc aagaaataga agtaagcaaa attaatccgg
     4441 ctgcatacaa tccgagaata gatttaatgc ctggtgactt ggaatatgaa aaattaaaaa
     4501 aatcaattga agaatttggc tatattgacc cactgatttg gaatgaaaga actggtaatt
     4561 tagtcggtgg ccatcagcgt tataaaattt tactcgaggg aaaaccggaa aacttaactg
     4621 tatcagtagt taacctagat ataaatcaag agaaagcatt gaatattgct ttaaataaaa
     4681 tagaaggtgg atggagtact gataaattag gcgaattact aaaaagcatt aatgatgaag
     4741 aaatgctaaa tttaacagga ttctcagcaa ttgaaataga tgaattaatt aaagaattcg
     4801 aattacctcc agctacagta gataaagtaa aagaaaaccc gttagactcg aatctgttcg
     4861 agtctttttt gtttcctcct ttttcgtatt tagattcaaa aacaaagagg tggagggata
     4921 ggaaggacca atggaaaaat ttaggtatta gaagtgagtt agggagagaa ggtaatctta
     4981 cgtttgcatc tagtttgcgt tcatctagtt tgacaggaac gagcattttc gaccccgtgc
     5041 tttgcgaact ggcctataga tggtttactc ctggagaatc tgcaaagata tacgatccat
     5101 tcgccggtgg ttctgtccgg gggattgtag cgaaagttct tgggcatgag tacactggaa
     5161 ttgatttaag aaaagaacaa gtagaagcta accacattaa tgctaaagaa atcggattag
     5221 acggcattaa ttggattact gataatagct taaacgcgga taaatatatt gaagataacg
     5281 cgatggactt attatttaca tgcccaccat actttgattt agaagtatat tcagataata
     5341 aagaagacat tagcaacatg gaatacgagg aatttattaa agtttattcc gagatattag
     5401 ataagggtgc gaataaatta aaagataatc ggtttgccat tgtggttatt tcagatgtac
     5461 gagataaaaa tggtttttat agggatttaa caggccttac taaatcggta tttgagaaga
     5521 atggtattta cttctataat gacttgattt tgttaaactc gctaggttca ggagcattaa
     5581 gagctcgcag aaatatgcgt aacaggaagt tagtccgtat tcaccagaat gtattagtat
     5641 tttataaagg aaatcctgat gagatacaag aacatttccc cattttagag gtactggaag
     5701 ataatttaga agaagcgctt gaatctatcg acatttaaac gaatatccct tacagtatca
     5761 gcataaagga aacggagtgg tgtacatgag agaagatatt caacgattaa aagataaagc
     5821 ggacacagct aaaatgaaat atcatcgaaa tttaattgat agagaaacag ctaagaaaca
     5881 aataattcca tacgctgaag cttttaattc tagatcgaaa gagattgcta aaaagtataa
     5941 tcaaaagcct aaattacttt cagtagcagc gtttttaaga taaaaaagaa gaggtgcgtt
     6001 aacacccctt ccccataccg ccatcactgg cgtgagatag caaacagacc tcgcgaggtt
     6061 ttagacattg ctatctcttt ttctattcta atagaaagct ggtgaaaagg caatgaaaaa
     6121 ggagaacgag cgttcgattg atgaaaactt aaatgatgat ttattagatt tagagataag
     6181 taaagctctt gaagaagcta agacagatga agaatacaag aaaattattc gcgctacact
     6241 agggaaatgg cttaataatt tgcaggaagg caatatacgt cttgaatctg taaatgacct
     6301 taaaacacta attgaagcag atagattact aagaagagat taatttttat tgaaagattg
     6361 gagaataaac atgaccctta tattttggac taaaaatgga caagagatgg aatttgatct
     6421 agttgaaaat gtagagattg acgagaaaat tattacattc gattactatg gagaaggtga
     6481 aaaaagaggc gtagcgttta tattaaataa tcttgctggc atggctgtag aggatgagaa
     6541 ttcggagagt gaaagtaaag atggcgcatc ttggtttaaa gtgtacaggg gttatgtaaa
     6601 gtaaaaacaa actcaacaca agacaggtgg tgacagtgat atggcaagga aacgcgaccc
     6661 acgaagaatt gaagcgaaaa atatgtggct tgaatccggc ggaaaaatga aactggttga
     6721 tattgcaaat aaactaggct gctcttctaa tcagatacgg aagtggaaat caacagaaaa
     6781 atggtccatc gatgacgaaa tagagagcgt tcctaaatcg aatagtaacg ttactaatga
     6841 aaaggaacgt taccataagt taaaagggaa cagcaacgca atcggtaatc gcggaggtgc
     6901 accaccaggg aatggtaatg cggttggtaa cgttggcggt agcgcaccaa ttggcaataa
     6961 gaacgctgtt accacagggg agtttgaaac gttgtcctgg gagtttttaa cagaaagaga
     7021 gcagcagttg tatgagagca tggacggcaa tttagtaact cacattaacc aaactatccg
     7081 tgagttagaa attagaaaac ggcgtatgat ggaacgcatc gcaaacatag aaaaatcaat
     7141 gtccgatatt gaaagaagca cgcttaaaca gcttagggaa aaggaataca tcggtgagaa
     7201 gaatggaaaa aaagttattc ttcacaggca agagctagta actgttgagg agcgcgaaag
     7261 agtgactgct aaaattgatc gcattttaag tattgagaac tcgttgaata acgtcactag
     7321 tcagctaatt agggcgataa aacagcaaag tgacctagaa caagcggagg taaaaaaggg
     7381 gctaatacgc tctcaaacta gtttaaataa ggaacgaatt atcaagccgg aagcagctag
     7441 cacttcccct gatttctcgc aaatgtccac tgaggagttg aaggagtatg ctgctagcct
     7501 caaacaataa agaaatagac agagaatacc tttatgatga agctgtaagg gagattgcta
     7561 gaagggaatt tgcagagttt tttttcctgt cgcacgggaa aagatataac ttattgagac
     7621 accagaagct gattgctgac aaacttcaaa aaataattga tggggaacaa aaacattata
     7681 ttattgaaat tcctccccag catggtaagt caacagtaat aactgaaact tttcccgcct
     7741 attttctaat gagaaacccg gacaagcttg caatggtagt ttcttattca gaggaacttt
     7801 ttaagaaatt cgggcgtaaa aacagagaga aattcaggat gtacgcaaat gatttatttg
     7861 gtctaaatat cagttctatg tcatctagtg tgagtaattg gggcatagag gaccatttag
     7921 gagaactata cagtacatct attctaggtg gagcaactgg gcgagggagc gacttactaa
     7981 tagttgatga tcctgtaaaa aatagggcag atgccgacag taagaccatg agagacaaag
     8041 tatattcgga atggcaggat actttttatt ctaggttatc agctagcggt agtgtaataa
     8101 tcattatgac tcgttggcat gaagatgact tagcaggtag gttactgaaa gaaatgtcct
     8161 tgccttggga agagattaaa atccctgcta tcgctgaaga gaatgatttg ctaggtagaa
     8221 aaattggtga agcattggcg ccagaaatcg gtaaagatga aaaatgggca gcacagacaa
     8281 aagaagttac tggatcacgc ggttggactg ccctatacca acaaagacca agcccagcag
     8341 acgggaacat atttaaacga cattggatta agtattatgt tccggatgca gaattcaaaa
     8401 agaaatacgg actaggagac gaggtaaaaa tattacctcg tcttttcgat aaatccgcac
     8461 aatcttggga tttaacattt aaggatacaa aaaacagcga ttttgtggcg ggccatgtgt
     8521 ggaaacgaaa acaaggagaa ttctttttta tcgatagaga acacgacaga atggacttgc
     8581 ctgcaagtat caatgcaatt aacagaatga cgactaagca tccagatgtt attgcgaaat
     8641 atatcgaaga caaagccaac ggaccagctg taatgcaagt attaaaaggt agattaacag
     8701 gtatgattcc ggttgatcct gaaggtggaa aagaggctag ggcaaacgct gtttctccat
     8761 tgtttgaagc agggaatgta tatttccccc atcctctata caaaccttgg tcggaagatg
     8821 ttgtagaaga attagttgcg tttcccaata ctagccacga tgatgatgtg gatgcactca
     8881 cgcaggcttt ggttaaattg atgataggtc aacaatcgtt gctagataga tataaaaact
     8941 taatgtaaag gtggtgagcg gatgtattca attgataaag caaaacaagc aaagatagat
     9001 tcaaagatag ttaataggaa tgatttcatg gttggccacg ggaaagcaaa ctcgcgtgac
     9061 aaattaacga ggcaagttcc aggcaatggg cagaaattag atataaaagc atgtgaaaat
     9121 ttatatgctt ctaacagtat tgctatgaat attatagata ttatctcgga agatatggtc
     9181 cgtgcaggtt ggtctttaaa aactgataac aaggaaataa aaaagaacat cgaatcgaaa
     9241 tggcgtaagt taaaaacaaa ggatcgattt cagaagcttt atgcagataa acgactttac
     9301 ggcgatggct ttctaagcat tggcgtagta tcaagtaatc gggaacaggc ggatttgagc
     9361 actgctatcg atccaaaaac aattaaaagt attccatata ttaatacttt taatacacag
     9421 aaagtaactc aactctattt gaatcaagat atgtttagtg agcactttgg tgaagttgag
     9481 ttttttgaag ttaatcgcgt gtcccaacta ggagaagaaa tattatccgg aacaacagcg
     9541 tctacttcag aacaaattca ccgttcgagg ataatacacg agcaaggatt gcgttttgag
     9601 ggcgaaacaa aaggaaggtc catatttgaa tcgctttatg atattattac cgtgatggat
     9661 acgtcgcttt ggtctgtagg tcaaattttg tatgactttg cttttaaagt gtataaaact
     9721 gacgatatag acactttaaa taaggacgat aaggcgaatt taacagcaat gctggatttt
     9781 atgtttcgta ctgaggcact cgcaattatc aaaggagatg aacagctgac taaagaatcg
     9841 acaaatgtat caggaatgaa ggatttgctc gattatggat gggattattt ggcaggtgct
     9901 gttcgaatgc ctaaaacagt tctaaaaggt caagaagctg gtactcttac aggtgcgcaa
     9961 tatgatgtta tgaactacta tgcgcgagtt tcgtccattc aggaaaacag acttcgaccg
    10021 caattggaat atttaacaag attgctgatg tgggcaagtg aagattgtgg tccgagtatt
    10081 gatccagatt cttttgaatg ggctattgaa tttaacccgc tttggaactt agacagtaag
    10141 acagatgccg aagttaggaa actaactgca gaagcagatc agatttatat tgtaaatggt
    10201 gtattagacc ctgacgaagt gaaagaaaca cgctttggtc gtttcggatt agagaattct
    10261 tctaaattca gtggtgatag cgcagaaatt gataaattag ctaagcttgt ctatgacgcg
    10321 tatgcgaaga agagcgcaga tggttaaaag acgcgttcct gcgactcgct atccacataa
    10381 tttagaaaag agttatacta aacagctagt aaagcttagc acggctttat ctgacatgtt
    10441 tttacatgaa tttgacacca gtattagtgc cattctaaaa acgtctcaaa atcgctctga
    10501 tgcgttcaga gaagatggta taagtgatgc cgttcaagct gttttaaata aagtaaaggc
    10561 gctaagtttt ggattattca acccgcgaga caagtattct attgcaagta aacatgttaa
    10621 agcaataaat acgactaata aatcacaaat aggcaatcaa gtgcgctcac aaggaattga
    10681 gcccacacag tctgaaccat ggttaagtga gttcatggac gcttcgattg ccgaaaatgt
    10741 aagttatatt ggttcaattg cagacgaatt taacgccaaa acagaacaaa taattttgcg
    10801 tggtgtaaaa aatggccaat cattaaaaga tatgcgtgat gaactggtta cgcaagtagg
    10861 tacatcaaaa aataaagctg aatttatcgc taatgaccag accggaacaa tctttgggca
    10921 gatgacagcc gagaggcata agaaagcagg catacccggc tttacttgga gagattcagg
    10981 agatgcagcg gttagaccat cacaccacgc aagaaatggt aaagtttatt catatgatga
    11041 tccaactgca cagattcctg gaactgatta tagatgtcgt tgcacagctg gtcctgaatt
    11101 tgatgagtct gtagttaaag ctgctacaaa tgagcgtaaa caacaagagc tagaagataa
    11161 agcaacatta aaaaacgctt atagtgaagt agctcaagct gctcaaaaag ctccggataa
    11221 tgttaaggac ttaataagta gtaacattac tgcaaattct tttgagatag tgcgagataa
    11281 taatattgca tatgcttatc gtccttcaac taagaagata attattaatc caagcaacaa
    11341 agctataaaa tattataata agcaagaaat attacttcat gaatctggtc atttgataga
    11401 ttatgcgaaa tataaatctt gggaaaataa gagttttact atttctactc agatagagaa
    11461 gaaagttgca aagtgggatg aaataaatga attgttcagt catgaaaaat gggcaaacga
    11521 tgattacttt agcgatattt gttcggcact tacggaaaat agagtaaaag gtaatgcagg
    11581 acatgccgct tcttactgga atcgaaaagg gagcattgaa aaagagattt ttgcaaattt
    11641 atttgctatg ctagcaatga acaaacaaga atcaattgct atggtaaaaa aacaatttcc
    11701 gatgatttat ggatcgttta ttaaaatgtt agaaggtgaa ttgaagtgat taactacaaa
    11761 aaatggcttg atagcatgat gtctactgaa gatggaaaaa tactttttga acgttataaa
    11821 aaactttatg gccattatcc gccgttctta cttgacgcta cagaaaaaga acagtgggat
    11881 gaaattaaac gattgataaa agacgctgat aaatgattca gtgtcttttt tatgccaaaa
    11941 attgaaaggt ggtgagaata tgaaatgaag gtgcaacgat ttgataaatc atttattaca
    12001 gattcaaata tgcaagttac taaagaaggt tacttaactg ttaaggcgcc agtcacgcgg
    12061 ccaggggtat ttccttatca acgagcggac ggcagtattc agcttgaagc caaattaccc
    12121 gaaaaccttt ttgctagcga aactattcaa tcgctcaatg caaagccagt tactaatgac
    12181 catccgaacg aaccagttaa tgcaagcaat catcaaaagt atgcaaaagg aacaacgcat
    12241 acagacgcgt gcgtaagtga taataagcta tttgtatctt tcactattac agactctaag
    12301 acaatacaag ctgttcaaga cggtaaacgc gaactgtccc ttggctttga atcggaagta
    12361 gtaaaagaaa gtggtactta tgcaggcgaa aggtacgatg ccgtgcaaaa atctgtatta
    12421 gtcaatcatt tagcaattgt agatgaagga cgcgtgggtc ctgaaattgc aatacgaggc
    12481 gactcagctg cttttatgat tgattcaaaa aacacgaaaa aacaaggagg aaacaaaatg
    12541 ccagtactaa agattgatag caaagaatat gaagtcgatt cagttgttaa gtcacgattt
    12601 gacgcattag aagcaaaact ggatgcagca aatgctaaag cagctaaagt tgatgcatta
    12661 gagggagaac gtgacggatt aaaaacaaag ttagataaag cggaaagtga tctggaagaa
    12721 gctaacaaaa atacaatgac ggaagaagat attgaaaatg cggtcacaga acgagctgca
    12781 ttattagatt ctgctaaagt gatgcttggt gattcatttg atttcaaagg gaaaactgct
    12841 cgtgaaatta aagaagccgc tattaaaaca tcgaatgatt catttgattc taaagacaaa
    12901 tcagatgaat atgttaatgc tttttatgat gcgatgacag ttacagcaga tgctaaagga
    12961 tatactgcag atgctaactt taataaaggc aaacctgatc caaaagagtt agaagaaatt
    13021 gaaaagaaaa aagcggcgcg acaaaatttt ggtaagaaag gagataacaa ataatgagta
    13081 ttccaaccgg acaagagtat atgatgcctg agctaggttt aggtaaaatt gcttcttatc
    13141 aacgttcgca agttgatagc gcagcagtaa aagcaaatat taaattcggc caagccgttc
    13201 aagttctcga tgatgaggct agcccgttgg aggctacagg tgatttttat ggagtcgctg
    13261 tggcaaagaa ctacgtagat gagtatacag atgataaagt aggtgtttat aaaccttctg
    13321 aagcggtgcc ggtgttacga caagggacaa ttacagttat tgtggatgag gatgtgaaat
    13381 ctggagaaaa agcagttgtt aatacagata cctctaattt cttaccttct acaacagcaa
    13441 aaacaactaa aacaggtgta attggtgtat ttaaatcaac aacatctaaa gatggattag
    13501 caaaattaga aattaatctg ccttaaaggc aaaaggagga agaacaatgc caggaaaaat
    13561 tacagcaaca attgaagcac gtgacttaca agctattgac aatgttattt atgaaccgaa
    13621 acaagaagaa ttaaccgcac ggagcgtatt cccgcaaaaa ttcgatgtga acgaaggcgc
    13681 agaatcgtat tcatttgatg ttatgacacg ttccggagct gctaaaataa ttgcgaacgg
    13741 agcagatgac cttccacttg ttgatgtgga catggtacgt aagtccgtac ctatctattc
    13801 tatcggtatt ggattgtcct atacagtaca agatttgcgt gctgctcgta tgcaaggaac
    13861 tacagtagat gctgcaaaag cggcaacagt tcgtagagca attgcagaaa aagaaaactc
    13921 tattgctttt agaggagaaa agaaatatgc aatcaaaggg gcatttgaag ctacaggcat
    13981 tcagattgat gtatctccga caaccggagt aggaaatgtt tccaaatggg aaaagaaaac
    14041 cgcagaacag attattgatg aaattggagc ggctcatact aaaattactg ttttgccggg
    14101 atatggtaca gcttcactaa aactatgctt accaccgaag caattcgaat taattaataa
    14161 aaaacgttac agtaacgaag attctcgctc tgtactgaaa gttctacagg ataacgcttg
    14221 gttttctgct attgttcgtg tgcctgattt agctggtatg ggtacttcga gttctgacag
    14281 ttttgcggta attcatgact caaacgaaac agcggagtta attattccga tggatattac
    14341 tcgtcatcca gaagaatatt ctttcccgcg cacgaaagtt ccgtttgaag agcgcacagc
    14401 tggcgtagtg gttcgattcc cagccgctat tgttcgtgtc gatggtattt aagaattact
    14461 aggaggaata aacaatgatt attgaaaaca aaggtgacta cgtacgtttt ttaggaaaag
    14521 ttagattagt tccaggaaca aacaatattg ataatgaaca tgctgaagaa ttagaacaag
    14581 cgcttaaaca tccgcttaat atacacttga ttgagtcgga tgaattaaaa gtacccgaca
    14641 atttacaaca agattctagc cttaatgatt tcaatgctac gaaagcggca ttgctagtca
    14701 aggatacttt tgatttagga gccttaaacg aatttttagc agaagagact acaaacggaa
    14761 atcggaaaac tgtaatcgat gctattaata agcaaattga atcaattagc aatccgccac
    14821 aagaagaacg atatgttcct gaagaggatt ttggtaaatg aggaggtaac tcatgaaaac
    14881 agacgttagt aagctcaaat taacggcatc agcattagca agcgtctccg atgattctct
    14941 acaagtacac attgatgatt catatttaga agtacaagaa aaaggatttc ctgaaaaatt
    15001 cgaagaaaga gcaaatagat accttgctgc acatcttgca acattagcaa ataaaaatgt
    15061 taagtcggaa gcagtaggtt ctctaaaacg ggaatattac gaagttaaag gagattctgg
    15121 gctgttatct acagagtatg gtcaagaata tgcaagattg cttaaggaag cgaacggtgg
    15181 atcaggaatt agcatggtgg tggtttgatg aaggtaacta ctgataaatc tacaatgaac
    15241 aaagcaatta gggagctgga tcagctagac cgttatagct tgcaaatcgg gctttttggt
    15301 gaagatgatt cttttattca aatgattgct ggtgttcacg aattcggttt aaccatacgc
    15361 ccgaaaggca agtatctaac cataccaaca ccagaagctg gtgataggag agcgcgagat
    15421 attcctggtc tatttaaacc acgaggtaaa aatattcttg ctgtagcagg tcctgatggt
    15481 aaattgacgg tcatgttcta tttaaagaaa gaagttaata ttccggaacg ttcttttttg
    15541 aggtccacat ttgatgaaaa aagcaacaaa tggggagagt tgtttgaggg atggattgat
    15601 gatattattc acgggaaatt aagcgccgag caggtatata accgattagg cgccaaaatt
    15661 gtggacgata tacaaatgaa aattgttgag attcaaactc cggccaaatc agcagcgacc
    15721 ttggccagaa accccagaaa aaacaatcct ttaattgtca ccggtaaaat gaaaaatagt
    15781 gttacttgga aggtgatgaa gtcataatgg aaaaaatggt tttccaatca ttactggaca
    15841 gctttggtgt tccgttgaca gttcttaaaa agcaagaaaa aggtggagaa ttcgttaacg
    15901 gcgagtgggt agtaagtcag cttgacgaaa cttctaaaat tgaagttaat gaacccttcg
    15961 ttccaagttc gctcatgact caaatgcccc aaacatctgc atacatggct gctaggtatg
    16021 aaaagtacga gatgatttgg ttttctagtc aagttctgcc gttaaaaagc aaagtgatcc
    16081 ataaaggaat atcgtattct gttgaggatg caattccttt cacagattac tcagacgtta
    16141 ctcagtatgg atgcaaggcg gtgagcgtta gtgccaaatg atggttatga ttatggaata
    16201 cttgttaaaa ccttgattgg tgctgttaat gagctttctg gtggtttaca acttattgaa
    16261 agtgctagtg gtggagagca accagaatat ccgttttgcc aatacaccat aacatctcct
    16321 tacattgcta tcagtcctga tatagtggaa ggggagcaat ttgagattgt aatctcgctt
    16381 acatggcgag ctttatctgg ccatcaagcc ttaaatttgg ccaacattac aaataagtat
    16441 ttccgctccc aaaaagggcg tttttttatg caagaaaatg ggggtattgt tgttgtcagt
    16501 gttcaaaaca gcgggctacg tgatactttc attagcattg aatatgagcg ctcagcaggc
    16561 attgatttgc gattgcgtgt agtggattcg tattcaagtg agatacaaga aattgataat
    16621 atcagtttta caaatgagaa tctaggagga taaaaaaatg gtagaaacta ttacagatgt
    16681 aagagtacac atttctgtat tgtatccgtc acctcgcatt ggacttggtc gtcctgcgat
    16741 ttttgtcaaa gggacagcga tgggttacaa ggaatacact actctcgaag aattgaaaga
    16801 tacgtttgca gatactacag aagtctatgc gaaagcaaaa gcagtgtttc ttcaaaaaga
    16861 tagacccgac acggtggcag tcatcactta cgaggatacg aaattattag aagctgcaga
    16921 agcttatttc ttgaaatctt ggcattttgc tttgcttgca gagtttaaag ctgcggatgc
    16981 tcttgcatta tcaaacttga tcgaagaaca gaaatttaaa tttgcggtgt tccaagttac
    17041 agctgtcgct gatattacac cacttgcaaa aaacacacgt actatagcaa ttgttcacag
    17101 caaaactgga gaaaaactag atgcagcgct aattgggaat gtagcaagtt tgccggttgg
    17161 ttccgcaaca tggaaaggcc gtcatggact tacaggaatc acatcagaag agctaaaagt
    17221 atctgaaatt gatgcaattc aaaaagtggg aggcatgtgc tatatcgaaa aagcaggcat
    17281 tgcgcaaact tcggaaggaa aaaccgtttc aggcgaattc atcgactcca ttcatggtga
    17341 tgattggatc aaagcaacaa ttgaaactcg tcttcagaag ttgcttacag aaacagacaa
    17401 acttactttt gatgcacgag gtattgcgct acttcaaagt gagttgacta ctgtcttaaa
    17461 tgaaggtttt gcgaacggaa tcattgatag taatgacgag acgggggagc ccaatttttc
    17521 tattactgcg cttcaacgtt cagatttaaa tgatgacgat attgctaaac gaaactataa
    17581 agggctatca ttccgctaca aacgttccgg agctattcat tccgtggatg tatacggcga
    17641 agtggaagta taaaaggagg aataagataa tgagtgaagt aatggcgaca tatgatgcaa
    17701 atacagtatc gacaattatc aacggaattt ctatttttgg tttttctgat ggggatatgg
    17761 tttcatgctc taaagattca aacaatgtag aaattaaatc agacgcacaa ggtaattcgt
    17821 cagcagctgt taataatgac aaaatgggta cgatcaaagt tgatttagct cagacatcac
    17881 cttgttatcc aaagctgatt gatatagcaa atagacagct aaaagttcct atttacgtta
    17941 ttaatggaaa agaaaaaatt ggtgggtcta tggcttttat tgaaaaatta ccagacgcag
    18001 gttttggtaa aagtgttggg acaaggtcat ttactttcaa agtactagat tatacacata
    18061 ctgcataaaa tatattatac taagcgacct ttttggtcgc ttttttagga ggaaacaaca
    18121 atggcagaga agaaaaataa tgcaactaaa agtgatgtag cagcagctca agcagcacaa
    18181 aagattccga aagcagaaaa aaaaccttta gataaatttg gaaaaaaaga agtgttcaaa
    18241 gctagcgaca aggttgaata cacattccag ttccctggaa ctcgcgctgc acaagcaatc
    18301 ttagacgagt ctaagaatgg ctatggcgta atcgtggatt ctgtatatta tgagcgaatt
    18361 atgaaagatg taattgttga gcctttgggt ttggacttag attattggga tgaacatgaa
    18421 ggttatcgcg aggttatgaa tgcagctgac aactttcttg gtggattgct taactaagtt
    18481 tcctaccgct cgacaagctg aacgggaagt caataaagag tttgatattt ggcttcctat
    18541 aatcgccggt atagcaacga aagaagaagt tgaggttgct acatcatatg aattagcaat
    18601 cttatgtgag gttgcaagac aaaaaataga actaatgaag ggtggtgtct gatatgtcag
    18661 gcgcattgag aaaaacaaca atcgaaattg attggaaaat caataatcaa atgttgcaga
    18721 aagctgatga agaaactgat cgcatcgttc gctctgcgga caagatggaa cggaacttca
    18781 atcaatctgc taggtctgtt gatggcacca cccgtgctat acataaacag tcaaatgaag
    18841 tgagagagag tgcgactcga gtagataagc ttgataagaa ttttaaagaa gcaaagaact
    18901 cggctaatca atttgggaat tctgctaagg gcgcagttga taaaactaaa aactcggtag
    18961 actcagcaaa gaatagcgtt aataagttag ataatgaaat tgataaaact actaaaaatg
    19021 ctaattctaa attcagcgca ctaaagacga ctattattgc agtaggtagc gctttgttgg
    19081 ttgctggtgg gaaagcaatg tttaattatg catcagatac aaatgagtcg ttaaataaag
    19141 tggacgttgc atttaaagga aatgctaaaa atgtcaaacg ttggtctaaa acaactctgg
    19201 ataatatcgg tcttgcgcaa gggactgcac tagatttggc tgcaacttac ggtgatatgt
    19261 caacatcaat gggattgaat acacaagaag ctgagaagat gtctacttct atggtcgact
    19321 tagccgggaa cttagcatca tttaagaata ttgatattga tagagcgaat acagccctaa
    19381 acggcgtatt cacaggtgaa actgaagcac taaaaagttt aggtattgta atgacccaga
    19441 ctaacttaga acaatttgct ttagaaacag gtgcaggaaa agtagctaaa agtagcacgg
    19501 aagttacaaa gcaaaatatt gcacgtgaaa aagcacaaaa aaaattaaac gaagcgataa
    19561 aagaacatgg taaaaattca ttagaagcaa gggaagcaca aaataaatta caggaaattc
    19621 aggctaaaac aagcgaaagc gcaaaagtta atttgaaaga catgaaacaa gatgagctag
    19681 tacgtctacg ttataactat gttatgaaac agactacaaa cgcgcacgga gattttaaaa
    19741 acactagtga tcaagccgca aacgcaagcc gcgtattttc tgaatcagta aaagagctag
    19801 catcaaacgc tggccagttc ttgctgccag ttattacacc attgattata aaagctagtg
    19861 atttcacgaa aaaactttcg gatatcccaa gtgctgtgaa agggatgaaa gagaaattta
    19921 agccagcgtt cgaagtgttt gaatccgtcg gcgacttttt caaaaaagac cttattccaa
    19981 gtgcgaaaga gctggcaaaa agtatgggac ccgggttcat cgaaggcggt gttttagcat
    20041 ttaaagggct agggatagta ttaaacacta ctgttattcc cgcttttaaa gcagttacta
    20101 aatttacgcg tgaaaatccg gatagcatga aaagaattgc taagtatgcg actgttggtg
    20161 tggcaggttt tttaggattt aagttagtaa aaaacactat tgataaagta acagttgcta
    20221 ttggaaaaat gaacagcaaa ctattgagca tcggaccaag tgcagcagct ggtgcgacag
    20281 aagcgaacgt tgcaatgtca actataggga caacaacgaa tggcgcgggc ggagttgtat
    20341 tacctggcgg aaaaggaaaa gggaaaatta aacttttcag taaagctaca gcagggctca
    20401 aaagcatggg gaaattcggc aagttagcat caggagttgg tgtattaggg gtcggattaa
    20461 gtgctactga acttattgga atgaacaaag ataatgcagg tgaaaaaact ggcggttttg
    20521 gaggctcgtt agggggcatg gctgggggcg ctgcaattgg cacagctata gccccaggta
    20581 ttggtactgc aattggaggg gcaattggcg cttttgccgg aactgcatta ggtaaagaat
    20641 tagggaaata tgttcaaaaa gaaggaccaa aaatattaga taaattcaag acaggctgga
    20701 aaggcttaag caaaattgct gaagagcatc cgattcttgg ggctaatata aatgtaataa
    20761 ataaaactat cgatgcagca aaaaaaggca ttaaagcagt aggagacaca cataaagctg
    20821 tttggaatat ctcgaaagcg atggttgcag accctctcaa aatcgatgcg ggtggaaaag
    20881 gcgtttctaa agactctgcc aaagcaatga ataaatattt aagcgctgag caaaaacttc
    20941 aaaatgatag tacatctaga atagtagacg gaaaatctat aagtggaaat gaatataaag
    21001 aaaatatgaa aacacatgac aatatgtcta ttcagcttgt taatgcaact gataaaaaat
    21061 cggttaaggc gaataatgat tgggatagat tagtcgcgtc gggagctgtt tccaaagatg
    21121 tggctagcgc gaagaagcac actaataatg aaacggcatc aataaataaa gctgatatta
    21181 agaaaaacac agaggaatta aagagattag aaaaaagtag atttgaagag cagagaaaaa
    21241 tagaagagaa tgctgctgga gcaatcttaa aaatcaaaga aaatgcaaag aaaaaaggag
    21301 ttaaactttc aaaagaagaa aaagttgaaa tagaacaaat taacaaagat aaagtaacgg
    21361 caattcaagt aagcgagtct acttactcta aaaaaagtgc tgagattcaa aagaaacaaa
    21421 gaaaagaagc tacaatagcg ctttctaaat cagcaaaaga acaaaagata atactaggga
    21481 atttagaaaa ctctaaaagc gaaatgtctg caaaagctgc tgcttctgtt gtgaaaaatt
    21541 ctgcaaaaca acgcaatgct actgtaaaag aagccaataa agaatttaaa gatacgaaaa
    21601 gaattttaga tgaaaaaaga tttgttacgg gggaaatagg cgagaaagaa tatcgtgagg
    21661 caataaaaca agctaagaag aaaaaagatg gcacaattga tgaagcagaa aaaatgcaca
    21721 aagaagtagt taatcaagct cagaaacaag cgaaaggaca tttgaaagaa gtcgactggg
    21781 aaacagggga aactctaagt aaatgggatc aatttaaaaa agcgacatca gaaacgttta
    21841 acagtataaa agatgcagca cttggaaaat ggaatgagtt gtcatctgcg acagttaata
    21901 ttttcggtgg aatgaaagat gcatctttac gcgtgtggga tagttttaag actaatttgt
    21961 acaaaatggt taacaatgtg attacagctg tcaataaagt actgtcgttc tttagcattg
    22021 gttcaatacc cttgttagga aacggaaata ttggagctag tcaagaaaac aagttgtcgg
    22081 caaaagataa aaaaacatat cattctactt cgcaatcagg aaatttggct atgaattata
    22141 cgggttctga tagtgcagct ggtcagatca tggctggtga ggaaggtttt gagatagctt
    22201 ataacaagaa ctcagcacaa gcaagaatcc ttggtaagaa tggaccggaa atcactacag
    22261 tagcccctgg aacaaaaatc ctcaatcatg ctgagtctaa aaaaatgatg tccggcggaa
    22321 tgggcgcagg aacggtttta cctggctttg cgaaagggac aaatggagca gtagagtcac
    22381 tgaaaagcct tggttcaaat gcaatagata gtgtcaaaaa cgcaggtaat aaagttaagg
    22441 atattgcatc ttctgcttgg gatttcgcaa ctgatcctgt cgctggagtt aacaagttga
    22501 tggcgaaata taataagttg cctaataatt cacctatggc gaacatggcc ggcggaatgt
    22561 tcaaatattt tggtaagggc gcaggcgatt ggttgaaaga aaaacttgct gatgtcttta
    22621 tgacatctga tgggggcgga gaagggggcg ggatgttttc tcctcacttt ggttcaccat
    22681 ttagaatgac gtccggctat ggaccgcgaa cagtgtttgg aaaacaagaa tttcataaag
    22741 ggatagatta cggagctcca acgggtacac ctcttcctgc tcaatatggc gggaaagtaa
    22801 gtcgcgcggg cacagctggc ggttttggta atttagtatc tattacggct gggaaaggta
    22861 tagaaaactt atatggtcat ctctctaaaa tcttaacttc tgctggttct gttgtcaaag
    22921 caggtcaaat catcggttta gtaggtagca cagggcgctc tactggtcca catgtacact
    22981 atcaagtaaa ccaaaacggt aaacctgtaa atcctagtag tagtcttggg ggtggctcat
    23041 ttaatggaaa aggtggctct aaagcagtta acggatgggt tcaacaagca attggtctta
    23101 caggcgttcc tgctagctgg tcaaacgcat tggccacaat tgcaatgaaa gaatctaacg
    23161 gaaacccgaa cgcggttaat aactgggata ttaacgccaa gcgcggcatg gcctcacaag
    23221 gtcttatgca gacgattcca gcgacattca acgcgtataa aatgaaaggt catggtaata
    23281 tcttaaatcc tgtagacaac atcatcgctg caataggata tattaaggct cgatatggaa
    23341 ctgtattcaa tgtacctggt attaaggctt tggcttcagg caaggcttac aaaggatata
    23401 agcgtggcgg acggccaccg gttaatgaaa ctgttttggt tggtgaagaa ggacctgagc
    23461 tatttgaaac tgatacggcc ggaacagtcc atacagctca aaaaacgaag cagatgttaa
    23521 acaaaagttc gagtggaaca actataaact tcaatccaac tatcaatata actgttgaag
    23581 gtggatcaag cgaaagcgag tcgtctattc gtaaaactgt tcgagcggaa atggaaaaat
    23641 tattcgaaaa acttgttgga atttatagtc ctggggaggt gtgatattta tggtagcaac
    23701 aataggttct gtgaaattag taaatacaaa cgaaagtgag tcttctccgt ttactattac
    23761 agataatcct gtagaaacgg gttcgcctgt ctctgatcac gttcaacgcg aaactaagac
    23821 actagaaatt agcggttttt tgctaggagc tactgctgaa aaagattatg ctactttaaa
    23881 aagctatgca gaaaaaggca ctatagtatc atttagaggt cgtgtatact ttaaaaacgt
    23941 gctaatcagt aatctatcaa aaagttataa tacaataaaa aatggttttg agattacggt
    24001 atcacttagg gatttaaggc gcgcatcgac gccttgggta agaaagaaaa agaaaagttc
    24061 tgggaaaaag caatctgtca aatcaaaaaa aagtcctggc acttatataa cagtgaaaaa
    24121 aggcgactgt tactggaaat ggtggaagcg atatggtaca agtatcgctc agctcaggaa
    24181 gtggaataag tggccagaca ggcgtattcc tattggtaag agagcgaggg ttaaatagtg
    24241 gctattagaa attatatacc agtggaactt gataatattc cggaactttt cgaatttgat
    24301 ttcgatgatg gcaaaagttt tttattcggg attaattatg cagaatcaca agatttgttt
    24361 tctgtcgatt tatatagtat tgaaggggaa ccaatcgctc tgggagagcg actagtatta
    24421 aacgaacggc tttgggcaga tattatagac gatagactcc cttctgttga cctagtacct
    24481 ttagacgaat ctgggaaaga aactaaaata acgaaggaca acttcacgaa aaccgtgttt
    24541 ttgtattttg acgatcttgc gccagaaatg gaattgccaa cgttggataa tgaggtgagt
    24601 atgatatgac tcaaatgctg tggatgcgcg aaatttatgt gcatataaac aacggaagtg
    24661 aatatgctac tattcatgaa aaaaatgaag cttcaggaag tttaaaaatt aattttagta
    24721 ttcctttctc cgatgaaccc aaaccagcgg aatgcgaagt tgttatatat aacttatctc
    24781 gcaactcatc taataaaata aaaaaaggtt ctactatttc ggttacagct ggatatcaag
    24841 gagataaagg tttgctatca caaggtaaag ttacgaaagt gtctactgtg ccaagcggtg
    24901 tagacaaaat aactaccatt aaattttccg aaggcgtcga ttactcggat aaaaaagatg
    24961 taaatattac gttcaaaaaa ggaacgtctg caaaatcaat tatccaaaga atcgctacca
    25021 aagcaggaat taaaatttat caaataaaac taccaacgaa taagatttat aaatctgggt
    25081 atactgcgga cggagatgct ctttcagtga ttgaagagat agttaaggac tgtaaagcag
    25141 caatatatta tagacgaggt aatttagtca ttcgatctat aaaatccggt gatgatgaac
    25201 gttttacact aaacagcagc actggcttga tatcatcacc agaacgttta gagaacgatg
    25261 aatactcggg atggagcttt cagtccttgc tacagcatcg aattgctaca gcttctatca
    25321 ttacactaaa atctaaaacc gtaaacggaa catttcgagt caaaaatgga atgcacaact
    25381 atgatggttc tactttcacg actcagtgtg aggtggtata gatggcacaa gatacaaagt
    25441 tctttgattc atttattaga ttagtaaatt caagtgtatc agtacttctt atgtgcagag
    25501 tcgttaatta tgatgcaagc aataaacgtg cggatgtgca gccattgaat ttaaagccca
    25561 acggagcaaa acgagcgatg attttagatg ctttagtttt aaagcacaca gaggaagata
    25621 tttctgaagg aaagatagta gcgatagtat tctctgattg cgaattagat aatattaatg
    25681 gatcaactga ctttaaacca gaaagctcaa gacaacatag tgttaatgat gcggttgtag
    25741 tgggggtatg ggacgtatga aagatttact aatagatagc aacggagata tagtggtttc
    25801 agataacgac atattaatga ctgatggcgt aaatgatatt gttcaatgtg tcaggatgat
    25861 attacagaca cgtgaaggtg aattttattt tgatgagaat tcaggaatga atcacgaaaa
    25921 tctttttacg aagaagccca attttgatta catcaaacaa gatgtaatta cggctataga
    25981 agaacaagaa gagcgtatat ctagtgtaga tagcgttctt tttgattttg acaaagatac
    26041 tagaaaatta catgtaagca taaaaatgac aggcttagat ggtcctgtga gtgtggaaga
    26101 ggtgatatta aatgcttgac gaacacggat ttaaacgaaa gacatacgat gaattgctta
    26161 ctgacatgga atcaaaagca aaggagcttt ttggtgagga tattaactta agctctcatt
    26221 cggcactggg agtgttttta agaataatcg cttggtttat gtcccttata catgaattag
    26281 ctgagagagt gtacaacagt ggatttataa gctctgctga cggtgtccaa ctggatagat
    26341 taggaagtaa catcagcgtt ttgcgtgagc cggcaatgcc agcggtagtg acgttagaac
    26401 ttactggtaa tgctggctac acaatcgaag aaggtgttca attcaagaca aagaacgatg
    26461 tcgtttttga aatgattgat gtagttacac tcgatgacaa ggggcatgga atagggcaag
    26521 ctatatcaca aatctattca gacaaagcaa atgttcctgc taattctatt acagttgtag
    26581 cagaaccaag tgaagatatt ttaacagtta ataaccctaa caaggccgat ggtggttcag
    26641 aaaaagaaaa tgatacaagc tacagggcaa ggataagatt agctactagt gcaagtcctg
    26701 gtccaccggt aaacggaatt atctcagctt taaatcaagt atcaggtgtt agaagtgtat
    26761 caataataga aaataatagt attgatttgg acgcgtataa taaccctgct aaatcagttc
    26821 atatttactg tctcggagga attgacgaag aaattggtga agcgattttt aatagtgtcg
    26881 ctgctggaat acaaacggtt ggtaaagtaa cggttaaagt aaaagattta tccggatttg
    26941 agcattcagt ttattatgat cgggctactt ctttatctat atacgctcat attatcgtcg
    27001 atgtaaattc taaatttgaa gacgatggcg gcgacgta
//
LOCUS       DASDXX010000015        26324 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.015, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000015 DASDXX010000000
VERSION     DASDXX010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26324
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.015"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            173..1159
                     /locus_tag="U0280_000542"
     CDS             173..1159
                     /locus_tag="U0280_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM2270501.1"
                     /translation="MTIGLGITITLFAVPIHSQAAGLEDGLTSKQEKFINEIAPHAQK
                     VQKEHGILASITISQAILESNWGESKLAKDGNNLFGIKGSYQGASIKLPTKEHNGVVW
                     VGTDAVFRAYPGWYESMNDHALLFVNGPSWNPHLYGGLIKEYDFEKAAIALGKTGYSS
                     DPEYAAKLIELIKKANLNKYDTVYSERVSDKAIKAAGEVAVKDNCYVWSAPGGTKGAK
                     PIVSTTKYFGRQVSINQEVKVTDSNISWYHIHQNGESIGWIESTSIKDFYQLEDYAPT
                     VDALLKTDDNNRLVINMDIDTSELHKTKLAKADTKEKTAFNLPLLNVQSIIW"
     gene            1271..2350
                     /locus_tag="U0280_000543"
     CDS             1271..2350
                     /locus_tag="U0280_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM2270502.1"
                     /translation="MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGL
                     GSAVAKKVGAEDGPKIMIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTI
                     VTRSGEEITGVIGSKPPHVMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIV
                     PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRG
                     AKTAAHFVQPDIGFAVDVGIAGDTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDF
                     VTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDF
                     ENAVKLITEVVKRLDKEKVTEIRLG"
     gene            2376..3134
                     /locus_tag="U0280_000544"
     CDS             2376..3134
                     /locus_tag="U0280_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEM2270503.1"
                     /translation="MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQ
                     DGLVLELLVSSGVSVPEEWLKGDYDVFEISTEISHLISETMTEQGVFAVVATSEPDMM
                     LLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH
                     IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPEL
                     QDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK"
     gene            complement(3179..3538)
                     /locus_tag="U0280_000545"
     CDS             complement(3179..3538)
                     /locus_tag="U0280_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270504.1"
                     /translation="MPSIRYIVKTDVAETFEIIKAGQVGSNIVFSEVRTFDFGELATL
                     ACEKFYFRSSNRAALFVTINNFHGETEVTIISTGSSNGFFTGIDWGAAFDYMHSVVAD
                     LKRVAIREVAIEKQEEI"
     gene            3695..4018
                     /locus_tag="U0280_000546"
     CDS             3695..4018
                     /locus_tag="U0280_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2270505.1"
                     /translation="MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEI
                     PQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKW
                     VEVPN"
     misc_binding    4111..4340
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            4386..5438
                     /gene="pheS"
                     /locus_tag="U0280_000547"
     CDS             4386..5438
                     /gene="pheS"
                     /locus_tag="U0280_000547"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEM2270506.1"
                     /translation="MLEQLQTLKNEAETQINEASDLKTLNDLRVKYLGKKGPMTEIMK
                     QMGKLSAEERPKMGSLANEVRTALTEAISSKQQILETEAINEKLKSETIDVTLPGTAP
                     SIGTKHLLTQVIEEMEDMFIGMGYEIAEGPEVELDYYNFEALNLPKDHPARDMQDSFY
                     ITENTLLRTQTSPVQARTMEKHDFSKGPIKVICPGKVYRRDNDDATHSHQFTQIEGLV
                     VGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFTEPSVEMDISCFKCGGKGCRV
                     CKGTGWIEILGSGMVHPNVLEMSGIDSTRYSGFAFGLGPERVAMLKYAVDDIRHLYTN
                     DLRFTKQFQSTETGEI"
     gene            5438..7846
                     /locus_tag="U0280_000548"
     CDS             5438..7846
                     /locus_tag="U0280_000548"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEM2270507.1"
                     /translation="MLVSYNWVKEFFQDFPLTAEELGEAITRTGIEIEGVEELSASLK
                     NVVVGEVLSCERHPDAEKLNKCLVQTDETEPVQIICGAPNVAAGQKVIVAKVGARLPG
                     GLKIKRAKLRGEVSEGMICSLAELGFESKVVPKAYAEGIYVLPAHVETGVSAITLLGL
                     DDAILDMAITPNRADALSMNGVAHEVGAIIHQKPAQPTEPDVSEKGKADDFISVEVEN
                     PAETPYYAIKMVENIEIKESPLWLQTKLMKAGIRPHNNVVDVTNYINLLYGQPLHSFD
                     YDKIGSKKIVVRSAKEQEEITTLDGEKRTLQAGHTVITNGVEPIAIAGVMGGEFSEVT
                     ENTTTVALEGAIFSSSSIGKASRELYLRTEASIRYDKGSDAWKVEKALAHGGALIAEL
                     SGGTLVGGVVEVDNREKAVNKIETSLTRINRILGTAITLAEIETIFDRLGFVLEVKND
                     TLIIEVPTRRWDITIEADILEEVARIYGYDEIPVTLPATSTTGGLSDSQKARRVMRAY
                     LEGAGLNQALTYSLTSKKDATRLALSDEKTVALSMPMSEEHSHLRTSIVPQLIRSASY
                     NIARKNMDVALYEMGTVFYATEGDNLPIEQEHLAGLITGNWHTVDWQKTPKPVDFFVL
                     KGIVEGLVNKLGIKSELHWKQTEKEELHPGRTASLILEGQEIGYLGALHPAVEANYDL
                     KETYVFEINVAALLDATKEKVVYHPIPRYPEMTRDLALLVDKNTDHATISQVIQEHGG
                     KLLVDIELFDIFEGESLGENKKSLAYTLTFLDSERTLVEEDVQKATNKVIEALQEKLH
                     AIIR"
     gene            8007..8708
                     /locus_tag="U0280_000549"
     CDS             8007..8708
                     /locus_tag="U0280_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270508.1"
                     /translation="MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGA
                     GKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTA
                     KENVELAAQIAPNALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLL
                     LCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRS
                     IKENPEPMSIDDLEW"
     gene            8722..12132
                     /locus_tag="U0280_000550"
     CDS             8722..12132
                     /locus_tag="U0280_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM2270509.1"
                     /translation="MKRSALWKDIYREIWRSKSRFISIFMLIMLGVAFFSGLKATGPD
                     MLLTADNYFNKYELANFNVQSTYGLDETDKEALEDISGVAQVELGYTADTLMKDKNIV
                     TKLFSNSESDNLNQYKIASGRLPEKSGEIALDDNDLVHKNVKIGDEVTFVKSDGNKLT
                     NTLKKSTYKVVGFVSSPAYIQKSERGSSTVGKGKTDAFGVIPEQDFDLPEYTIANLTF
                     NNLAAKQAFSDEYVSTEEKDKKSVEKALADQPEKRLNKIKTKEQKKLDDATAEINKRK
                     AELQENEAKLANAKAQLEEGFSEYNAAKASYDAKIKHGEAEIANGEAERRSAKKQLDT
                     AKTQIDQGETALSQAEMELEEGRAAWEDANNLLNTANGYLRSAKSTLENALKQPDLTD
                     FELDRNSLTNSFQMLASELDLSSAERAEYENAMNQLLDDYENGNISDAEIREALNAAL
                     AQVGNAENEYQSARATLDAEKQKIEQGEQTLAAKKQELQQAKTAYQEGLAKYQAGLEK
                     ISQAKQQLADGKETGSTELQSALAKLNVGQAEYEKNLALFEKEKAKAEGKLASAEKEV
                     KIGQEKLDALKLPKYYVLDRNDNPGYSEYKENADRLTSLSTAFPIFFFLIAALVCLTT
                     MTRMVEEQRTQIGTLKAFGYSNGSIILKYLVYGSTASIIGSVLGILIGFQFFPNIIFN
                     AYKSMYEMPPVDIGFYWSYSLLSLFVALFCTTFTAYVACRAELRANAATLMRPKAPKI
                     GKRIFLERISFIWKRMNFTSKVTARNLFRYKQRMLMTVLGVAGCTALILTGFGLRNSI
                     SDIAKMQYGQIMKYDAAIYQDMSAPPAAKETFDEIMNDSNIKSKLAMSQTNIETVKSG
                     QSAQTTSIIVPKNLNELPDYIVLRDRASHTTEKLTDDGAIITEKLAKLFDVKPGDTIT
                     VKNAENDKFQIKVSAITENYAMHYIYMTKSYYQQVFKEKPTYNLDLLMLKDTSEKVES
                     NFAEKLTDSKAILNVTFSNNVSSLLNETLDSLNIVIVVLITSAALLAFVVLYNLTNIN
                     VSERIRELSTIKVLGFYPKEVTMYVYRENIILTLMGIAAGFVLGFFLHRFIITTAEVD
                     QMMFSPAISWTSYLFSGILTLVFATVVMVVMHIKLKRIDMIEALKSVE"
     gene            12230..12682
                     /locus_tag="U0280_000551"
     CDS             12230..12682
                     /locus_tag="U0280_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2270510.1"
                     /translation="MERQKVKQLIKSYQQTYIFAMNQIHQAISEISASTVDLSIEQFF
                     VLREIATYDGISATELAATLAVNKSAITPKLKKLEEKGYIRRERNQQDKRAVVLTISE
                     KGNNVYEECEKQLELLVNEWLEILGEKDSEQFFELFQKITKSVVEPRQ"
     gene            12698..15898
                     /locus_tag="U0280_000552"
     CDS             12698..15898
                     /locus_tag="U0280_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEM2270511.1"
                     /translation="MKWIMKLRWAILAFWLAAAVVLMIIAPPMADLVREKGELKLPDG
                     YPSSLATEMQKKHNPDDKGSAYIAVYTADHKLTGTELNDIQDSLNSIEKDKDELHVTN
                     VLSSFNQPELKDKFLSKDGKTMVASLTVDDTDASVKSIRNALDKKMDVKGVDTYLTGN
                     KLIQEDVVQGSEDGLHKTEGITVVFILVVLFLVFRSAVAPFIPLVTVGISYLVAQSTV
                     AFLIDIFNFPVSTYTQIFMVCIMFGIGTDYCILLMSRFKEEMGAGLNPREAVHATYRT
                     AGKTVIYSGVAVLVAFTSLYFVQFDLYRSAVAVGVGIVVLLAALYTLVPFFMSTLGTH
                     LFWPLNKNISHKENKIWGAAGKFTFARPWIALLIVAAITLPPILLHTGTESFNSLDEI
                     SDKYPSKKGFEIVSDSFGAGQVAPTQIFIENDDNMRTTDYIAQIEKISDDLSHLKGID
                     MVMSASRPAGKRVDDIYIKNQAGQVNDGVGQATDGVGEVKKGLDSASSELKKSEPALD
                     KAVAGVSDLQKGTVATQEGINQLQTALAQIQTGIESGATGAGDLKQGVAEAKSQLATL
                     QNGEAQIQAGYVEIQKNLQNVADQLKGFEDPSSQAIDTSKLEEQFKKIGASFQAFAAA
                     HPEVRNDPRFQKLAADIQGLETAGNELKTSAGQQMAALQAKMKELNQGIQQLATAMNQ
                     LNEQSKQISDGLSAFSTGLGQIETGLDQLEKGLNQAADGQGQVVSKMPEISNALTQIA
                     AGQGALKDGFAGISGQMGQLTDGLTSGADGLGKVESGLNTANGLIDDWSKVPYASSGI
                     YVPDALLKNADFQKVLDQYISSDGKLATINVILTKNPYSNEAMDSIDDINEQLSASMK
                     GTKLENAKIGIGGMTSANYDTRDMSTADYHLVLVIVLASVFVTLVIVLRSLVMPIYLI
                     ASLVLTYFAALGFAEIIFMRILGYSGLTWATPFFGFVVLVALGIDYSIFLMSRFNEYN
                     GLSVRDRMIKAMKNMGGVIFSAVIILGGTFAAMMPAGVLSLLEIATVVLIGLVLYAVV
                     ILPLFVPVMVKLFGRGNWWPFITRKGDHQENVPPKK"
     gene            16002..16676
                     /locus_tag="U0280_000553"
     CDS             16002..16676
                     /locus_tag="U0280_000553"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM2270512.1"
                     /translation="MIKLGNDWDELLKDEFNQPYYLTLRQFLKKEYQTKKVFPDMYDI
                     FNALKYTACKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNC
                     EIPNNGYLIRWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNRIIEIINQKEEPVVF
                     LLWGNNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPID
                     WQIPSI"
     gene            complement(16714..17640)
                     /locus_tag="U0280_000554"
     CDS             complement(16714..17640)
                     /locus_tag="U0280_000554"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HEM2270513.1"
                     /translation="MANTVILVDQPTLEKMKQTYLPFSNPKLPPGAVFAAKKTGVSIT
                     GYKSRKVMFQGVNGEVEAKKWVATLPESKTKAPSVSKGILPANFASKNVIGSDEVGTG
                     DFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPHSVLLCPNP
                     KYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYRYLAKEP
                     SIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGIPLPKGAGPHVDAVA
                     AEIIERFGLETLAKYTKQHFANTEKALKMVKK"
     gene            17794..18057
                     /gene="zapA"
                     /locus_tag="U0280_000555"
     CDS             17794..18057
                     /gene="zapA"
                     /locus_tag="U0280_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEM2270514.1"
                     /translation="MANERNKVVTTIYGREYTIVGVETTDHLRKVAREVDEKMHEIGS
                     QNHALDSGRLAVLTAVNATHDYLKLEQKYLELEQELARIKGRD"
     gene            18057..18599
                     /locus_tag="U0280_000556"
     CDS             18057..18599
                     /locus_tag="U0280_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM2270515.1"
                     /translation="MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYY
                     EDLAPHLTFIPYPGSDTADGLSIILQELRTETAYYNVLGFAIIFIVAIIVVHMLASLV
                     GGLTKIPVLRQINGLLAAVFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWML
                     ENTPILSEQFYDWMTDILPK"
     gene            18691..20403
                     /gene="polX"
                     /locus_tag="U0280_000557"
     CDS             18691..20403
                     /gene="polX"
                     /locus_tag="U0280_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HEM2270516.1"
                     /translation="MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSR
                     SLSEIDDFTKISGIGKTTGEIIQRYLDSGECPELEALKKEVPAGLVPLLDVPGLGGKK
                     LSRLYHELGVVDKDTLLQEAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDV
                     LPIIQKVEAYLADIAPIETFAQAGSLRRLRETVKDLDYVIATEKPEEVQKALLAFPLI
                     TDVIGAGETKVSAVLEDNITISVDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSN
                     EKISEYGVEQEDGSVRHFESEKAFFEHFKIPFLPPEVRRDGTEIERVTKDTKFLELSD
                     IRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGKFLRVANGLDEKRLLEQQA
                     EIKKIAANYPEIDVYSGVEMDILADGSLDFDDETLKQLDFVIASIHSSFQQSEEEIMK
                     RLKTACENPYVRLIAHPTGRIVVKRKPYHVNMKELIQLAKNTGTALELNANPQRLDLN
                     REHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLDKSAILNTKTAAEFKHF
                     LQNK"
     gene            20426..22783
                     /locus_tag="U0280_000558"
     CDS             20426..22783
                     /locus_tag="U0280_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEM2270517.1"
                     /translation="MEKKVEAILEFDKIKKQLTEFASSSLGEQAILELAPATDFQVVQ
                     KTQLETEEGAKIIRLRGSAPITGLTDVFAHLKRLEIGGDLNGLEIYQIGSNLRVSRQM
                     KNFMNDLLEIGVELPLLGALSDELLVLKEVEEDIAISVDESGKVLDTASEALSTIRRT
                     LRRTEDRVREKLESYLRDRNASKMLSDAVITIRNDRYVIPVKQEYKGHYGGIVHDQSA
                     SGQTLFIEPQSVVDLNNERKALQAKEKQEIERILAEISASLAAWINEIHHNTFILGRF
                     DFIFAKARFGKAMKAVTPHLSDAGVVHLIAARHPLLDAAKVVANDIYLGEDFTTIVIT
                     GPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTF
                     SSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASVVATTHY
                     PELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSNAFDISRRLGLSENIITEA
                     RSLVDTESADLNDMISSLEEKRNLAETEYEEARELARGADNLLKDLQKEISNYYQQKD
                     KLIEQASEKAATIVEKAEAEAEEIIHELRTMQLNGAAGIKEHELIDAKTRLGNAKPKT
                     INKTIPQAPKQKPHVFQEGDNVRVLSLGQKGTLLNKISDKEWNVQIGIIKMKIKTTDL
                     EYIQPEKPKKQRIITSVHSSGSPAKSELDLRGERYEDALQKVDKYLDEALLAGYPQVA
                     IIHGKGTGALRTGVTEYLKNHRMVKSIRFGAAAEGGNGVTIVEFK"
     gene            22864..23175
                     /gene="trxA"
                     /locus_tag="U0280_000559"
     CDS             22864..23175
                     /gene="trxA"
                     /locus_tag="U0280_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM2270518.1"
                     /translation="MVKEITDATFEQETSEGLVLTDFWATWCGPCRMVAPVLEEIQEE
                     RGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKY
                     V"
     gene            23251..25062
                     /gene="uvrC"
                     /locus_tag="U0280_000560"
     CDS             23251..25062
                     /gene="uvrC"
                     /locus_tag="U0280_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEM2270519.1"
                     /translation="MSSEHIQNKLALLPDQPGCYLMKDRQGTIIYVGKAKILKNRVRS
                     YFSGTHDSKTQRLVQEIVDFEYIVTSSNVEALLLEINLIKKHDPRFNIRLKDDKTYPF
                     IKITNERHPRLIITRQVKKDKGKYFGPYPNVYAANEVKRILDRLYPLRKCSTLPNKVC
                     LYYHLGQCLAPCVFDVEASKYKEMQDEIVAFLNGGYKTVKNDLMKKMQEAAENMEFEK
                     AGEFRDQINAIETTMEKQKMTMNDFVDRDVFGYAIDKGWMCVQVFFIRQGKLIERDVS
                     QFPFYNDADEDFLTFIGQFYQKANHIPPKEIYLPDDVDSEAVQAVVPDTKIIVPQRGN
                     KKDLVKLAYKNAKIALNEKFMLLERNEERTVGAVERLGEAMGIPTPSRVEAFDNSNIH
                     GTDPVSAMVTFLDGKPSKNDYRKYKIKTVEGPDDYATMREVIRRRYWRVLKEELPMPD
                     LILIDGGKGQIDSAKDVLTNELGLDIPVAGLAKDDKHRTSQLLFGDLLEIVPLERNSQ
                     EFYLLQRMQDEVHRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLK
                     EASVEEIKEAGVPLNVAEEVHKHITAFNEKAKNTEQK"
     gene            25243..>26324
                     /locus_tag="U0280_000561"
     CDS             25243..>26324
                     /locus_tag="U0280_000561"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM2270520.1"
                     /translation="MGLVVLKFGGTSVSTVDKIGKTADQAIYEKKQGNKVIVVVSAMG
                     KSTDKLVAMAEEISEAPDKREMDMLLSTGEQITIALLAMTLKEKGHDAISYTGWQAGI
                     ETEAVHSNARIADIDSARIESALDAGQIVVVAGFQGFTTDGEITTLGRGGSDTTAVAI
                     ASALNAVKCAICTDVVGVFTTDPRYVKKAQKLEQITYDEMLELANLGAGVLHPRSVEY
                     AKNFRIPLEVRASHEQVPGTMIEEDLTMENTKVVRGIAFEDQITRVTIHWKQKEAMRV
                     SKVFTKLAENNIDVDIIIQGITGLGHGNLSFTIKTSALLATLAVLEESKELLQIEKLE
                     SEQDLAKVSIVGSGMVSNPGVAAQMF"
BASE COUNT         9012 a         4882 c         5416 g         7014 t
ORIGIN      
        1 cgtatattgt aacataagta atgtaaaagt aatgtgtatt acaagaatgt tttgatagaa
       61 tgaagtggtt gttttaaaga acactagttt ccagtttttc aaaagctgga aggataaatc
      121 aaagaaggat gtgcaataaa tcattatgtt acagctcgca aagaagcatt tggtgacaat
      181 tggacttgga attacaatta cattatttgc agtaccaatc cactcccaag ctgctggtct
      241 agaggacggc ttgacttcca agcaagagaa gtttattaat gagattgcgc cgcatgctca
      301 aaaagtgcaa aaagaacatg gtattttagc tagtattacg atttcgcaag caatcctaga
      361 gtccaattgg ggcgaaagta aattagcaaa agatggcaat aatttattcg gaattaaagg
      421 ttcctatcaa ggagcttcta ttaaattacc taccaaagaa cataatggcg ttgtttgggt
      481 tggaacagat gctgttttcc gtgcgtaccc aggttggtat gaatcaatga atgaccacgc
      541 acttttattt gtcaatggac cgtcttggaa ccctcattta tacggaggac taatcaaaga
      601 atatgacttt gaaaaggcag ctattgccct tggaaaaaca ggctattcat ctgatccaga
      661 gtatgcagcg aaattaattg aactgatcaa aaaagcaaat ttaaataaat acgataccgt
      721 ttatagcgaa cgtgtatcag acaaagcaat taaggctgct ggagaagtag ctgtcaaaga
      781 taattgctat gtttggtctg ctccgggtgg cacaaaaggt gcgaaaccta tcgtcagcac
      841 taccaaatac tttggccgtc aagtttctat taatcaagaa gtaaaagtaa cagattccaa
      901 tatttcttgg taccatatcc atcaaaatgg agaatccatc ggttggattg aaagtacatc
      961 gattaaagac ttctatcaat tagaagacta tgcgccaaca gtagatgcat tactaaaaac
     1021 agatgacaac aatcgtttag taatcaatat ggatatcgat acatctgagc tacacaaaac
     1081 aaaactagca aaggcagata ccaaagagaa aactgccttt aatttacctt tactgaacgt
     1141 tcaatccatc atctggtaat aaccttgcaa aaaaagctga atagattact cggctttttt
     1201 tgcgttttca aaggattttt agaaagaaac tgttataatg aaaatggagt ttataaggag
     1261 ggttatttat atggatgaac aattaaagat gttaaaagca ttaacagatg caaaaggtat
     1321 tcccggtaac gaacgtgcag tgagaaatgt gttccgcgaa tacatcgaac cgctagcgga
     1381 tagttttgaa acagatggct taggaagtgc tgttgcaaaa aaagtcggag cagaagatgg
     1441 acctaaaatt atgattgctg gccatttaga tgaagttggc tttatggtaa cgcaaattga
     1501 cgataaaggt tttatcaaat ttcaaactgt gggcggctgg gtttcccaag taatgctcgc
     1561 acaaaaagta actatcgtga cgcgctctgg cgaagaaatc acaggtgtta tcggttctaa
     1621 accaccacat gtgatgacag cagcagaacg ccaaaaatca ttcgatatta aagacatgtt
     1681 tattgatgtc ggtgcagtag ataaagctga agtggagagc tatggcattc gtccaggcga
     1741 catgattgta cctgcttttg actttaccgt aatgaaaaac gaaaaattct tacttgcaaa
     1801 agcatgggat aaccgtattg gccttgcaat tgcgattgaa gtacttaaaa acttacaaaa
     1861 agaacaacat ccaaatatcg tttacggtgt aggaactgtt caagaagaag ttggtttacg
     1921 tggtgccaaa acagctgcgc atttcgttca accagatatt ggttttgccg ttgacgttgg
     1981 tatcgcagga gatacaccag gcgttacaga caaagaagca atgagcaaaa tgggtgaggg
     2041 tccacaaatc gtcatttacg atgcatctat ggtagcgcat gccggacttc gtgattttgt
     2101 cacagatgta gcggatgaac tatctatccc ttaccaattt gaagcaatcc caatgggcgg
     2161 tacagactca ggttccatcc acttaactgg aaacggaatc ccgtctctat ccattaccat
     2221 tgcaacacgc tacattcatt ctcattcctc gatgctacac cgtgatgatt ttgaaaatgc
     2281 agtaaaacta attaccgaag tagtcaaacg tttagataaa gaaaaagtaa cagaaattcg
     2341 cttaggttga gtttcgagaa aagaggacaa cttttatgga acagattcaa tcagtaaaaa
     2401 acgaccgtgt caaaacatgg aaaaaactac aaacgagaaa aggccgcgat aaaaccggga
     2461 cttatttggt ggaaggcttt catttagtgg aagaagcatt gcgtcaagat ggtttagtac
     2521 tggagctgct tgtttcaagt ggtgtttctg ttccggaaga gtggttaaaa ggcgattacg
     2581 atgtatttga aattagtaca gaaatcagcc acttaattag cgaaacaatg acagagcaag
     2641 gtgtttttgc agtagtcgca acatctgaac cagatatgat gcttttatat gggaaaaaat
     2701 tattgctagt agatgcagtg caagatccag gcaacgtagg tacgttaatt cgtacggctg
     2761 atgctgctgg atatgattgt gtcgtacttg gcaagggaag tgcagatctt tataatccta
     2821 aagtaattcg tagtacgcaa ggtagtcatt tccatattcc cgttattcaa gcagatttat
     2881 ttgattggat tgcgaattta gaagaagagg gcgttccagt tattggcgca gttcttgatg
     2941 accaagcgaa atcattaaac gacatgacaa aacgcgacac tttagcgttg atggtcggaa
     3001 atgaaggtaa tggcatttct cctgaattac aagatcgtct ttctgaaaaa gtatatattc
     3061 caatttatgg tgacagtgaa tcattgaatg tcgcagttgc tgctggaatt ctactttacg
     3121 gcttaagaaa ataaagaaaa agtggtggct aagttgtttt gacttagtca ccactttttt
     3181 agatttcttc ttgtttttca atagctactt cccgaatagc aacgcgtttt aaatcggcta
     3241 caacactgtg catataatca aatgccgcac cccagtcaat tccagtaaaa aagccatttg
     3301 aactaccagt ggagataatc gttacttctg tttctccgtg aaaattatta atcgtaacaa
     3361 aaagtgctgc acgattcgac gagcggaaat aaaacttttc gcaagcaagt gttgcaagct
     3421 ctccaaaatc aaaagttcta acttcagaaa acacgatatt cgatcccact tgaccagctt
     3481 taattatttc gaaagtttct gcaacgtccg ttttaacaat atagcgaatg gatggcatat
     3541 cagtacctcc ttctataaaa ctatcttata tatagtttaa gacagaagaa gaatttggtc
     3601 aatcgggcca caacttacta aatataagca acataatatt tattagttac tttctgatga
     3661 tagatatggt acaataacgt tagaggtgag aattatgact gatgcacata cagtatgtcc
     3721 gaagtttgaa tcggcgttcc aattactagg taaacgctgg actggactta tcatcaatgt
     3781 cttactgact ggtccaaaaa ggtttaaaca agtcgccgct gagatcccgc aaatgagtga
     3841 tcgggtgctt gcagaacgtt tgaaggaact tgaggaaatg gatatttgct taagacaagt
     3901 ttatccagaa actcctgtac gcattgaata tgaattaacc gaaaaaggga aagcactcca
     3961 agaagtaatg cttgaagtcc agtgctgggc ggataaatgg gtggaagtac ctaattaaaa
     4021 aagaaataat ctctccaacc aatatggaga gattattttt tagcttgaat ctttcctaga
     4081 accatactat aatagaaact atctaaataa ctaaagacaa tgaaagagcc aagtagcata
     4141 gtgagtctgt atagggagaa gtggtcatag actgaaagcc actttacaaa cgaatttgtg
     4201 aacatttcac ctctggagtc gccccccgag aagcacttta tgtgtgaagg tggtccggtt
     4261 actaagccgt tatcgaattt tgagtgggaa caattttttg ttcttattag ggtggtaccg
     4321 cgagaagtct cgtccctttg tggatagagc ttttttattt tgtctaaaaa gaaggagtga
     4381 acggtatgtt agaacagtta cagacgctga aaaatgaagc agaaacgcaa attaacgaag
     4441 catcagactt aaaaacatta aacgacttac gggtaaaata ccttggtaaa aaaggcccga
     4501 tgaccgaaat catgaaacaa atggggaaac tttccgcaga agaacgacca aaaatgggtt
     4561 cacttgcgaa tgaagtaaga accgcattaa cagaagcaat ttcaagcaaa caacaaattt
     4621 tagaaacaga agcaatcaat gaaaaactaa aatcagaaac cattgacgtt acattaccag
     4681 gtactgctcc gagtattgga acaaaacact tgctaacaca agtaattgaa gaaatggaag
     4741 atatgttcat tgggatgggt tacgaaattg cagaagggcc agaagtagaa ctagattact
     4801 acaacttcga agcgttaaat ttaccaaaag atcacccagc tcgtgatatg caagatagct
     4861 tctatattac agaaaatact ttactacgta cccaaacttc acctgtacaa gcaagaacaa
     4921 tggaaaaaca tgacttctct aaaggaccaa tcaaagttat ctgtccaggg aaagtgtacc
     4981 gccgcgacaa tgatgatgca actcactccc accaatttac gcaaattgaa gggctggttg
     5041 ttggcgaaaa catcacgttt gctgacttaa aaggaacatt aactgttctc gcaaaaacaa
     5101 tgttcggtga agaacgtgaa attcgtcttc gtccatcctt cttcccattc acagaaccat
     5161 ccgttgaaat ggatatctct tgtttcaaat gtggcggtaa agggtgccgc gtttgtaaag
     5221 gaacaggttg gattgaaatt ttaggaagcg gaatggtaca tccaaacgtg cttgaaatgt
     5281 cgggaattga ttccacgcgt tacagcggtt ttgctttcgg cttaggacct gaacgggttg
     5341 cgatgttgaa atatgcggtg gatgatattc gccaccttta tacaaatgat ttacgcttta
     5401 cgaagcaatt ccaaagtaca gaaacggggg aaatctaatg ttagtttcat ataattgggt
     5461 caaagaattt ttccaagact tcccgttaac ggcggaagag ctaggagaag caattacaag
     5521 aacaggtatt gaaatcgaag gcgtagaaga attaagcgct agtttgaaaa atgtcgtagt
     5581 cggcgaagtt ttatcatgcg aacgccaccc cgatgcagag aaattgaata aatgtctcgt
     5641 tcaaacagac gaaacagaac ctgttcaaat catttgcgga gctccaaacg ttgccgctgg
     5701 tcaaaaagta atcgtagcca aagttggcgc aagacttcca ggtggactta aaatcaaacg
     5761 cgcaaaacta cgcggcgaag tgtcagaggg aatgatttgc tccctggctg aacttggctt
     5821 tgaaagcaaa gttgtaccaa aagcatacgc agaaggaatt tatgtattac ctgcgcacgt
     5881 ggaaacgggt gtaagtgcaa tcactttact tggactagat gatgcgattt tggatatggc
     5941 aatcacacca aaccgcgcag atgcattgag catgaatggt gtagctcacg aggttggtgc
     6001 gattattcat caaaaaccag cacaaccaac cgagcctgac gtatctgaaa aaggaaaagc
     6061 agacgatttc atttctgtag aagttgaaaa tccagccgaa acaccttact atgctattaa
     6121 aatggtagaa aacattgaaa tcaaagaatc gccactatgg ctgcaaacaa aactaatgaa
     6181 agctggcatt cgtccacata ataacgtggt cgatgttacc aactacatca atttattata
     6241 cggacaacct ttgcattcct ttgactatga taaaattggt agcaagaaaa tcgttgtacg
     6301 ttctgcaaaa gaacaagaag agattaccac gcttgatggc gagaaaagaa ctttacaggc
     6361 tggacataca gttattacaa atggcgtaga accaattgct atcgctggcg ttatgggtgg
     6421 agaattttcc gaagtaacag agaacacaac gacagtagcg ctagaaggtg ctattttcag
     6481 cagctcttcc atcggtaaag catctcgcga attataccta cgtacagaag caagcatccg
     6541 ttacgacaaa ggttctgacg cttggaaagt agaaaaagca cttgcacatg gcggagcgtt
     6601 aatcgctgaa ctaagtggcg gaacactagt aggcggtgtc gtagaagtag ataaccgtga
     6661 aaaagctgta aataaaatcg aaacaagcct aacacgcatt aaccgcattt taggaacagc
     6721 aattacgctt gcggaaatcg aaacaatttt tgatcgttta ggttttgtat tagaagtgaa
     6781 aaatgatact ttaatcattg aagtgccgac aagacgttgg gacatcacta ttgaagcaga
     6841 tattttagaa gaagtagctc gtatttacgg ttacgatgaa attccggtaa cacttcctgc
     6901 gacaagcaca acaggcggct tatcagacag ccaaaaagct cgtcgtgtca tgcgcgctta
     6961 tttagaagga gcaggactta accaagcatt aacttactct ttaacatcta aaaaagatgc
     7021 aactcgtcta gcgctttctg atgaaaaaac agttgcatta tcgatgccaa tgagtgaaga
     7081 acatagccat ttaagaacaa gtatcgttcc acaattaatt cgtagcgcaa gttataacat
     7141 cgctcgtaaa aatatggacg tggcacttta cgaaatgggt accgtgttct acgcaacaga
     7201 aggggacaat ttaccaattg aacaagagca tttggcaggt ctaattactg ggaactggca
     7261 tacggttgat tggcaaaaaa caccaaaacc agtagacttc ttcgttttaa aaggaattgt
     7321 cgaaggttta gtgaacaaat taggtatcaa atccgaactt cactggaaac aaacagaaaa
     7381 agaagaactg catccgggaa gaaccgccag ccttatttta gaaggacaag aaattggtta
     7441 tcttggagca cttcacccag cggtagaagc taactatgat ttaaaagaaa catatgtctt
     7501 tgaaatcaat gtagctgctt tactagatgc aaccaaagaa aaagttgtgt accatccaat
     7561 cccacgttac ccagaaatga ctcgcgactt agcattgctt gtggataaaa ataccgacca
     7621 tgcaacaatt tctcaagtaa tccaagagca cggcggaaag ttacttgtcg atatcgagct
     7681 atttgatatt ttcgaagggg agagtcttgg cgaaaataaa aaatcgctcg catacacatt
     7741 gactttccta gatagcgaaa gaacactagt cgaagaagat gtacaaaaag caaccaataa
     7801 agtaatagaa gcattacaag aaaaactaca tgcgattatt cgctaaatga agaagaacta
     7861 ggctagctgg aaaacatttt caactagttt ggttcttttt ttgtttttta taaaatagtg
     7921 gaagtctttc cttttttagt acttcactta cttaaataac acatgttata atgatggcac
     7981 atgccagaga aaaaaggacg agaaaaatga cctatgtaga aatgaaagat gtatctaaat
     8041 actatcaaat gggcgagaac gttgtcacgg caaatgataa aatcactttc gggataaaaa
     8101 agggtgaatt tgttgtaata gtcggacctt ctggagccgg aaaatccact gtacttaata
     8161 tacttggtgg aatggatagt gcaagtgaag gcaaaattat ggtagatggg caggatattg
     8221 ctcaatataa tgcaaaacaa ttaaccaaat atcggcgaac agatgtcggc tttgtatttc
     8281 aattttacaa tttggtaccc aatttgactg ctaaagagaa cgtagaatta gctgcccaaa
     8341 ttgcgccaaa tgcattagac gcagaaactg ttttaactca agttggatta agtcacagat
     8401 tagacaattt tccagcacaa ctatctggcg gggaacaaca gcgtgtcgcc atagcacgtg
     8461 cgcttgctaa agcaccgaaa ctgcttttat gcgatgagcc aaccggggca cttgattacg
     8521 atactggaaa atcagtctta aaattattac aagaaacttg ccgtaacacg ggaacaaccg
     8581 ttattgttat tacccataac acagcgatta cgccaattgc agatcgaatt attgaaatta
     8641 ataatgcaaa agttcgcagc atcaaagaaa atccagaacc aatgtcgatt gatgatttag
     8701 aatggtagga aggagcaacc agtgaaacgt tcagctttat ggaaagatat ttaccgcgaa
     8761 atatggcgtt ctaagagccg ctttatttcc atttttatgc tgattatgtt gggtgttgct
     8821 tttttctccg gacttaaagc aactggaccc gatatgcttc taacagccga caattatttt
     8881 aataagtatg aattagctaa ttttaacgtg caatctactt atggactaga tgagacggac
     8941 aaggaagcac ttgaagatat atctggtgtc gcacaagtgg aactcggata tacagcagat
     9001 actttaatga aagataaaaa tatcgtaacg aaactatttt ccaattctga aagcgataat
     9061 ttaaatcaat acaagatagc tagtggccgt ttaccagaaa aatcagggga aattgcactg
     9121 gatgacaatg accttgttca taaaaatgtc aaaatcggcg acgaagtaac ttttgttaaa
     9181 agtgatggaa ataagttaac taacacgcta aaaaaatcaa cttataaagt agttggcttc
     9241 gttagctcac cagcttacat ccagaaatct gaacgtggct cgagcacggt tggaaaagga
     9301 aaaacagatg cctttggtgt gattccagaa caggattttg atttaccaga atacactatt
     9361 gctaatctta cttttaacaa tttagcagca aaacaagctt ttagtgacga atatgtatcc
     9421 accgaagaaa aagataagaa aagcgtcgaa aaagctttag cagaccaacc agaaaaaaga
     9481 ttaaataaaa tcaagacgaa ggaacaaaag aaattagacg atgcaacagc agaaattaac
     9541 aaacgaaaag cagaactaca ggaaaatgaa gctaaacttg caaatgccaa agcacaatta
     9601 gaagaaggat tttctgaata taatgctgcc aaagcaagct atgacgccaa aatcaagcat
     9661 ggcgaagcag agattgcaaa cggtgaagca gaacgaagaa gcgcaaaaaa acaacttgat
     9721 accgcaaaaa cacagattga ccaaggcgaa acagctcttt cacaagctga gatggaatta
     9781 gaagaaggta gagcggcttg ggaagatgcc aataatcttc ttaatacagc aaatggttat
     9841 ttgcgaagtg ctaagtcgac attagaaaat gctttaaaac aaccagattt aactgatttt
     9901 gagctagacc ggaacagctt aacaaattca tttcaaatgc ttgcatcaga acttgattta
     9961 tcaagtgcag agcgcgctga atatgaaaat gcgatgaatc agttactaga tgattatgaa
    10021 aatggcaata ttagtgatgc ggaaattagg gaagccttaa acgcggcact tgcgcaagtt
    10081 ggtaacgctg aaaatgaata ccaatccgcc agagccactt tagacgctga aaaacaaaaa
    10141 atagaacaag gcgaacaaac tttagctgca aaaaaacaag aacttcaaca agcaaaaact
    10201 gcctaccaag aaggtcttgc taaatatcaa gcaggtttag aaaaaatttc gcaagcaaaa
    10261 caacaactcg ctgatggaaa agaaacaggt tccacagaac tacaaagcgc acttgctaaa
    10321 ttaaacgtag gtcaagcgga atacgaaaaa aatctcgctt tgtttgaaaa agagaaagca
    10381 aaagcagaag gcaagctagc tagcgccgaa aaagaggtta aaatcggtca agaaaaacta
    10441 gatgcgctca aacttccaaa atattatgtc cttgatcgaa acgacaatcc aggctacagc
    10501 gaatataaag aaaatgcaga tcgtttaacc tcgttatcaa ccgcattccc aattttcttc
    10561 ttcctaatcg ctgcgctcgt ttgtttgacg acgatgacgc ggatggtaga ggaacaaaga
    10621 acacaaattg gaacgttgaa agcatttggt tattctaatg gtagcattat tttgaaatac
    10681 ctcgtatatg gttctaccgc gagtataatc gggagcgttc ttggaatatt aattggattc
    10741 cagtttttcc cgaatatcat ttttaacgcc tataaatcga tgtatgaaat gccaccagtg
    10801 gatattggct tttactggag ctacagtttg ctatccttat ttgttgcgtt attctgtaca
    10861 acatttactg cttatgtagc ttgtcgtgcc gaacttcgcg ccaatgcagc aacattaatg
    10921 cgtcccaaag caccaaaaat tggcaaacgg attttcttag aacgaattag ttttatttgg
    10981 aaacgaatga acttcacaag caaagtgact gcgagaaatt tattccgcta caaacaaaga
    11041 atgctcatga cggttctagg agttgctgga tgtaccgcat taattcttac tggttttgga
    11101 ttacggaatt caattagtga catcgccaaa atgcaatatg gccaaattat gaaatatgat
    11161 gcagctattt atcaagacat gagcgcacca ccagctgcca aagaaacctt tgatgaaata
    11221 atgaatgact ccaatatcaa aagcaagtta gctatgtctc aaacaaatat tgagaccgta
    11281 aaatcaggac aatcagctca aactacatcc attattgtcc ctaaaaattt gaatgaatta
    11341 ccagattaca ttgtgcttcg cgaccgtgcc agtcatacaa ccgaaaaact caccgatgat
    11401 ggtgcgatta ttacggaaaa actagctaaa ttatttgacg taaaaccagg cgatacaatt
    11461 accgtcaaaa acgctgagaa tgacaaattc caaataaaag tcagtgccat tactgaaaac
    11521 tatgcaatgc actacattta tatgacaaaa tcatattatc aacaagtatt taaagaaaaa
    11581 cctacctaca atttagactt attaatgtta aaagatacct ctgaaaaagt agagagcaat
    11641 tttgcggaaa aattaacaga tagtaaagcc attttaaacg ttactttttc caataatgtt
    11701 agttcattgt taaatgaaac tttggatagt ctgaatattg ttatcgtggt actcattacg
    11761 tctgcggcat tacttgcgtt tgtcgtgctt tacaacctga caaatattaa tgtttcagaa
    11821 cggatacgag aactttctac tatcaaagta ctcgggtttt atccaaaaga agtgactatg
    11881 tatgtctacc gggaaaatat tattttaacc ttaatgggca ttgcggctgg atttgtcctt
    11941 ggattcttct tgcaccggtt tatcatcacc acagcagagg tagaccaaat gatgttcagt
    12001 ccggcaatta gttggacaag ctacctattt tccggcatac tcaccctcgt ttttgcaact
    12061 gttgtaatgg ttgtcatgca cattaaacta aaacgaatcg acatgattga agcactgaaa
    12121 tcagttgagt gatgatgaaa agaacttgtt tttatcggca agttcttttc atttgactta
    12181 aaaataaata aagcttaaac tgaaaaatag ttaagggggt gaactttatt tggaaagaca
    12241 aaaagtaaaa caactgataa aaagttacca acaaacatac atatttgcga tgaatcaaat
    12301 acatcaagct atttcagaaa tttcagcaag tactgtagac ctttccattg agcagttttt
    12361 tgttttgcgt gagattgcta cctatgatgg tattagcgca acagaactag cagccacttt
    12421 agcagtaaat aagagcgcta ttacacctaa actgaaaaaa ttagaagaaa aaggctacat
    12481 tagacgagaa cgaaaccaac aagataaacg cgccgtagtt ttaactatct cagaaaaagg
    12541 gaataacgtt tacgaagaat gcgaaaaaca attagagtta ctcgtgaatg aatggctcga
    12601 aatactaggg gaaaaggaca gcgaacaatt ttttgaatta tttcaaaaga ttaccaagtc
    12661 ggttgttgag cctagacaat aaaaggagag atttggcatg aaatggatta tgaaactccg
    12721 ctgggccatt ttagcatttt ggcttgcagc agcagtcgta ctaatgatta ttgcaccacc
    12781 catggcagat cttgtacgcg aaaaaggcga attaaagctg cctgatggct atccgtcatc
    12841 actagcaacg gaaatgcaaa agaaacataa tccagatgac aagggttcag cttacatcgc
    12901 tgtttatact gccgaccata agttaactgg aacagaatta aacgatattc aggattcact
    12961 caactctatc gaaaaagata aagacgaact tcatgtaaca aacgtgttat ctagttttaa
    13021 ccaaccagaa cttaaagata agttcttatc aaaagatggt aaaacaatgg tagcaagttt
    13081 aaccgtagat gatacggatg cctcggttaa aagcatacgt aacgcattag ataagaaaat
    13141 ggatgtaaaa ggtgttgata cgtatttaac aggtaataaa ctaattcaag aagatgtagt
    13201 tcaaggatct gaagacggtt tacataaaac agaaggcatc accgttgtct ttattttagt
    13261 tgtattattc cttgtattcc gctcagcagt ggcaccgttt attccacttg taacagtggg
    13321 aattagttac ctcgttgcgc aaagcacggt agcattctta attgatatct ttaatttccc
    13381 agtctctaca tacacgcaaa tctttatggt ttgtattatg ttcggaattg ggacagacta
    13441 ttgtattctc ttaatgagtc gatttaaaga agaaatgggt gccggtctca atccacgaga
    13501 agctgttcat gcaacgtatc gtacagcagg aaaaacagtc atttatagtg gtgtagctgt
    13561 tctcgtagca tttacttcgc tatattttgt acaatttgat ttatatcgtt ccgcagtagc
    13621 agtcggcgtt gggattgtcg ttttacttgc cgcgctgtac acgctcgtac cattctttat
    13681 gagcacactc ggaacccatt tattctggcc gttaaataaa aatattagcc ataaagaaaa
    13741 taaaatttgg ggcgctgctg gtaaattcac ttttgcaaga ccgtggattg ctttattaat
    13801 cgttgcagct atcacgttgc cgccaatctt attgcataca ggaacagaat catttaactc
    13861 attagacgaa attagtgaca aatatccttc caaaaaaggt tttgaaatcg tatcggacag
    13921 tttcggagca ggccaagtag cgccaacaca aatttttatc gaaaatgacg ataatatgcg
    13981 aactacagat tacatcgcgc aaattgaaaa aatttccgat gatttatctc atttaaaagg
    14041 catcgatatg gttatgagtg cctcacgtcc agccggaaaa cgggtagatg acatttacat
    14101 taaaaaccaa gccggacaag taaatgacgg tgttggtcaa gcaactgatg gcgtagggga
    14161 agtgaaaaaa ggactagatt cagcaagttc agaactcaaa aaatccgagc ccgccttgga
    14221 taaagctgtt gcaggagtga gcgatttaca aaaaggcact gtcgcaacac aagaaggaat
    14281 taaccaacta caaacagcac tcgcacaaat ccaaacaggc attgaaagcg gagcaactgg
    14341 tgctggtgat ttaaaacaag gcgtagcaga agccaaatca caactagcta cgttacaaaa
    14401 tggagaagcg caaatccaag caggatacgt agaaattcag aaaaacctac aaaacgtagc
    14461 tgaccaacta aaaggctttg aagaccctag ctctcaagca attgatactt ccaaacttga
    14521 agagcaattc aaaaaaattg gtgcttcttt ccaagcgttc gcagcagcgc atccagaagt
    14581 gagaaatgac cctcgtttcc aaaaactagc cgcagatatt caaggcttag aaacagctgg
    14641 taacgaactg aaaacctctg ctggacaaca aatggcagca cttcaagcaa aaatgaaaga
    14701 actaaatcaa ggtattcaac aactcgcaac agcgatgaat caattaaacg agcagtccaa
    14761 acaaatctct gatggactta gcgcttttag tacaggactt ggtcaaatcg aaacaggact
    14821 tgatcaatta gaaaaaggtc tcaatcaagc cgcagatggt caaggacaag ttgtttccaa
    14881 aatgccggaa atctctaatg cactaacgca aatcgctgct ggacaaggtg ccctaaaaga
    14941 tggctttgca ggcattagcg gtcaaatggg tcaattaaca gatggcttaa cttctggcgc
    15001 agacggccta ggcaaagtag aaagtggtct aaacacagcg aacggactta ttgatgattg
    15061 gtcaaaagtt ccttacgcaa gttccggaat ttatgtaccg gatgctctac taaaaaatgc
    15121 tgatttccaa aaagtattag atcaatacat ctcttctgat ggaaaactgg caacgattaa
    15181 tgtgattttg acgaaaaatc catattccaa tgaagcgatg gattcaattg atgacattaa
    15241 tgaacaactc tcagctagca tgaaaggaac aaaactggaa aatgcgaaaa ttggtatagg
    15301 tggaatgacg agtgccaatt acgatacgag agatatgtca acagctgact atcatttggt
    15361 tcttgtaatc gttctagcga gtgttttcgt gacacttgtt atcgtcttgc gttctctagt
    15421 aatgccaatt tatctgattg catcactcgt attaacgtac tttgctgcac ttgggttcgc
    15481 agaaattatc ttcatgcgaa ttcttggata cagtggtcta acgtgggcaa caccgttctt
    15541 cggatttgta gtactcgtcg cgctcggtat cgattattcg atcttcttga tgtcaagatt
    15601 taacgaatac aacggacttt ctgtacgcga tagaatgata aaagccatga aaaatatggg
    15661 tggcgttatc ttctcagcgg tcattatcct cggtggaaca ttcgccgcaa tgatgccagc
    15721 tggcgtgctt tccttactcg aaattgcgac ggtcgtttta atcggcttag tactctatgc
    15781 cgtcgttatt ttaccactct tcgttccagt aatggttaaa ctattcggac gtggcaactg
    15841 gtggccattt attacaagaa aaggcgacca tcaagaaaac gtaccaccga aaaaataaca
    15901 taataaaccg cattccttta aaaaagggga tgcggttttt agtttgcttc caaagactat
    15961 tttgctaaga tatagttaga tgaatgaagg aggaaaaaat catgataaaa ctcggaaatg
    16021 actgggatga gttactaaaa gatgagttta accaaccgta ttatttaacc cttcgccagt
    16081 tcctaaaaaa agaataccaa acgaaaaaag tatttccgga tatgtacgac attttcaatg
    16141 cgttaaaata taccgcttgt aaggatgtca aagtggtaat actcggtcaa gacccatatc
    16201 atggaccagg tcaagcacac gggctctcat tttccgttca acaaggagtg cagattccac
    16261 catcactgca gaatatttat ttggaattac ataacgactt gaattgtgag attccaaaca
    16321 atggttattt gatacggtgg gcagatcaag gagtgctact attaaatacg gttctaactg
    16381 ttcgcgccgg tcaagccaac tcacaccgag gacaaggctg ggaaatacta acaaaccgca
    16441 ttattgaaat cattaaccaa aaagaagagc ccgtagtctt tttactatgg ggaaacaatg
    16501 cgaaagaaaa gttgcaattg ttaacaaatc cgaaacatac tgcgtttaca tccgtacatc
    16561 ccagtccact ctcagcatcg cgcggtttta tgggatgcaa acatttttct aagacgaatc
    16621 aatttttaga acaaaatggt gtaaaaccaa ttgattggca aattccttct atataaataa
    16681 aaacatctcg ccatttattg acgagatgtt tttttacttt ttaaccattt ttaatgcttt
    16741 ctctgtatta gcgaaatgct gttttgtata tttcgctaat gtttccagac caaatcgttc
    16801 gatgatttcc gctgcaacag catccacatg aggtcctgcg ccttttggaa gtgggatgcc
    16861 aacttctttt gacatcgcat caaaagcttg cacaaattta taacgagcaa taatcgaagc
    16921 agcagcgacg gaaagatgta atccttctgc ttttgtcgca aaaaacacat cttctcgaat
    16981 aatgcttggt tcttttgcta aatagcgata atacgtattt ttttcagcaa attgatcaat
    17041 taaaatcgct tctggtttga caggtgcgag ctttttcaag acgttttcaa tcgcgcggtt
    17101 atgtagtaaa gctttcattt gtccttggtt catgcctctt ttttggagtt cgttgtattt
    17161 aggattaggg caaagcagca cactgtgcgg aacaagtggc atgattttct cagcaatacg
    17221 acaaatttct ggatctttca ttgctttcga gtcctttaca cctagctctt ttaacagggg
    17281 catcatttcg gcgtccacat atgcggcaca aaccgtaatc ggtccaaaaa aatcaccggt
    17341 gccaacttca tctgaaccaa tgacattttt tgatgcgaag tttgccggaa gaattccttt
    17401 agagacggaa ggtgcttttg tttttgattc tggaagagtc gccacccatt tttttgcttc
    17461 tacttctccg tttactcctt ggaacatcac tttgcgcgac ttgtagccag tgatggaaac
    17521 accggttttt tttgcagcga aaacagctcc tggtggtagc tttggattag aaaatgggag
    17581 atatgtttgt ttcatttttt caagtgttgg ttgatcgact aagataactg tatttgcgat
    17641 aaggcatcat cctttcaaag ttctattgta acatactacg acgaaagact gaatatcggc
    17701 taaacgggtg gttgactctt ttctttcctg ctttttcgtg ataagattat gacaagtagc
    17761 ggcctaaatg aatttgggcg aggaggaata tacgtggcaa atgagagaaa taaagtagtg
    17821 acaacaattt acggtagaga atatacgatt gttggcgtag aaacaacaga ccacttacgt
    17881 aaagtagctc gcgaggtcga tgaaaaaatg cacgaaatcg gctcccaaaa tcatgcacta
    17941 gatagtggta ggcttgctgt actgacagct gtgaatgcga cacacgatta cttaaaacta
    18001 gaacaaaaat atctagagtt agagcaagaa ctggctcgaa ttaaaggaag agattaatga
    18061 ttttaaatgc gattatttta attttacttg tttgcggctt tttcgcagga tttagaacag
    18121 gccttatcaa acaacttatc ttattattag gttatatttt ggcatttttt atctcgtata
    18181 cgtattacga agatttagcg ccacatttaa cgtttatacc ttatccaggt agtgatactg
    18241 cagatggatt atccattatt ttacaagaat tacgaacaga aacggcctat tataacgtac
    18301 ttggatttgc gattattttt attgtcgcaa tcattgtcgt tcatatgctt gcatcacttg
    18361 ttggtggctt gactaagatt ccagtcctgc gccaaattaa tggattgtta gcagctgttt
    18421 ttggtgttgt taagtcctac ttaattattt ttgttgtctt gttcatcatg gcaatttacc
    18481 cggcgaattg gtctgaaaac cttattgata gctcaacggt tgcccagtgg atgcttgaaa
    18541 acacgccaat tttatccgaa caattttatg actggatgac agacattctg ccaaaataaa
    18601 agaaacattc gataccagat gtatactctt agccaatttt ggataggatt tctctggtat
    18661 tttttaatga ttttacaggg aggaataaag atggctacta ataaaaaaga aattattcgt
    18721 ttactcgaag aaattgccac ttatatggaa ttaaaaggag aaaatagctt taaaatatct
    18781 gctttccgca aagctgcaca agcaattgaa ttagatagta gaagtttatc tgaaattgat
    18841 gattttacga agattagtgg catcggaaaa acaacgggcg aaattatcca acgttattta
    18901 gatagcggag aatgtccaga acttgaggcg cttaaaaaag aagtaccagc tggtcttgtt
    18961 ccacttttag atgtgccagg gctaggaggc aagaaattat cgcgtcttta tcatgagctt
    19021 ggtgtggtgg ataaagatac attactccaa gaagcagaaa atggccatat cgaagcattg
    19081 aaaggttttg gtaaaaagtc tgctgaaaaa atggccgaag cagtgcgcga aatgggtgag
    19141 cgccctgata gatatccgct aaatgatgtt ttaccaatca ttcaaaaagt agaagcttat
    19201 cttgcggata ttgctccaat cgaaactttt gctcaagctg gaagtctacg cagattgcgg
    19261 gaaacggtga aagatttaga ttatgttatt gcgacggaaa aaccagaaga agttcaaaaa
    19321 gcattactgg catttccatt aattacggac gttattggag ctggtgaaac aaaagtatca
    19381 gctgtattag aagataatat taccatttcc gtggatttcc gtttagtaga aaagaaagct
    19441 tttgcaacga cactacatca ttttacgggt tctaaagatc acaacatcaa aatgcgccaa
    19501 ttagctaaac aatccaatga aaaaataagt gagtatggag tcgagcaaga agatggaagt
    19561 gttcgtcact ttgaatcgga aaaagcattt ttcgagcatt ttaagattcc gtttctccca
    19621 cctgaagttc gccgagatgg tacagaaatt gagcgcgtga cgaaagatac aaaattcctt
    19681 gagttaagcg atattcgcgg ggacttgcac atgcatacaa cttggtcgga cggagcctac
    19741 gcgattccag aaatgattga agcatgtatc gcaaaaggat atgaatacat ggttattaca
    19801 gatcacggga aatttttgcg agtagctaat ggtctggacg aaaaaagatt attggagcag
    19861 caagcagaaa ttaaaaaaat agcagctaat tatccggaaa ttgatgttta ttccggcgtt
    19921 gaaatggata ttctggcaga tgggtcgctt gattttgatg atgagacttt gaagcagttg
    19981 gattttgtta tcgcatccat ccattccagt ttccaacaat cagaagaaga aattatgaag
    20041 cgattaaaaa cggcctgtga aaatccatat gtgcgtctga ttgcgcatcc gacaggtaga
    20101 attgtcgtga aaagaaagcc atatcatgtt aatatgaaag aactaatcca gttagcgaaa
    20161 aatacaggaa ctgccctaga attaaatgcc aatccgcaac gtcttgattt aaaccgtgag
    20221 catttagaaa tggcacacgc tgccggggta ccgattgcga ttaacacaga tgcgcacgac
    20281 acgaagcacc ttgatttcat gtctattggc gttcgagctg ctacaaaagc ctggctcgac
    20341 aaatcggcca ttctaaatac gaaaacagca gctgaattta aacatttttt acagaataaa
    20401 taacttttaa aaagaaggat gactaatgga aaaaaaagta gaagccattt tagaatttga
    20461 taaaataaaa aaacaactca ccgaatttgc ttcttcgtca ctgggggagc aagcgatttt
    20521 ggaactcgct ccagcaactg attttcaagt agttcaaaaa acgcaacttg aaacagaaga
    20581 aggagccaag attattcgtt tacggggaag tgcgccaatt actggtctaa cagatgtttt
    20641 tgcacatttg aaacgtttag agattggtgg cgatttaaac gggctagaaa tttaccaaat
    20701 aggtagtaac ttgcgcgtta gccgtcaaat gaagaatttt atgaacgatt tactggaaat
    20761 cggtgtcgaa ttgcctttac tcggcgccct ttcggatgaa cttttagtac taaaagaagt
    20821 agaagaggat attgcgattt cagtagatga aagcgggaaa gtgttagata ctgcgagtga
    20881 agcgcttagt acgattcgcc gaacactccg ccgtaccgaa gaccgcgtac gtgaaaaact
    20941 agaatcttat ttgcgcgatc gtaatgcctc taaaatgtta agcgatgcgg ttattacgat
    21001 tcgaaatgat cgttatgtta tcccagttaa acaagaatac aaaggtcatt atggtggtat
    21061 cgttcatgac cagtctgctt ccggtcaaac gcttttcatc gagccacaaa gtgtagtgga
    21121 tttaaacaac gaacgaaaag cacttcaagc aaaggaaaaa caagaaatag aacgcattct
    21181 tgctgaaatt tctgcttcac tagctgcttg gattaatgaa attcatcata atactttcat
    21241 cctcgggcgc tttgatttta ttttcgccaa agcacgtttc ggaaaagcga tgaaagctgt
    21301 aacgccgcat ttgagtgatg ctggtgtcgt ccatttaatc gccgcacgcc acccgctttt
    21361 agacgctgcg aaagttgtag cgaatgatat ttatttaggc gaagatttca ctaccatcgt
    21421 tatcaccggt ccaaatacag gtggtaaaac aattaccctg aaaacattgg gattactaac
    21481 actcatggca caatctggac ttcaaattcc cgcgcaagaa gattctacta tcgctgtttt
    21541 tgagcatgta tttgccgata ttggtgacga acaatccatc gaacaaagtt taagtacgtt
    21601 ctcatctcac atgacgaata ttgtttccat tttgggaaat gttaatcaga aatcgcttat
    21661 tttgtacgat gaactcggag cgggaacaga cccacaagaa ggtgcggctt tagcaatcgc
    21721 cattcttgat gcaagccatg caaaaggtgc aagtgttgtt gcgacgaccc attatccgga
    21781 actaaaagca tatggatata atcgcgttca cgcaaccaat gcatctgttg agttcaatgt
    21841 cgaaacactt agcccaactt ataaattatt aatcggtgta cccggtcgaa gtaatgcttt
    21901 tgatatttca cgccgcttag gattaagcga aaatattatc actgaagcaa gaagccttgt
    21961 cgataccgaa agtgccgatt taaatgatat gatttccagc ctagaagaga aacggaactt
    22021 agcggaaacc gagtatgagg aagcacgtga attagctcgc ggggctgata accttttaaa
    22081 agatttacaa aaagaaatca gcaactacta tcaacaaaaa gataaattaa tcgaacaagc
    22141 gagtgaaaaa gcagcaacta ttgtggaaaa agccgaagcc gaggccgaag aaatcatcca
    22201 cgaattgcgc accatgcaat taaacggagc agcaggaatc aaagaacatg aacttatcga
    22261 tgccaaaaca agacttggga atgctaaacc aaaaacaata aacaaaacca tcccacaagc
    22321 gccaaaacaa aaaccacatg tattccaaga aggcgacaat gttcgtgtcc tctcccttgg
    22381 ccaaaaaggc acacttttaa ataaaattag cgataaagaa tggaacgtcc aaatcggcat
    22441 catcaaaatg aaaatcaaaa ctactgactt agaatacatt caaccagaaa aaccaaaaaa
    22501 acaacgtatc atcacatctg ttcatagtag tggttcacca gctaaaagcg aactcgattt
    22561 acgcggcgaa cgatatgaag acgcgctaca aaaagtcgac aaatatctag atgaagcact
    22621 actcgcagga tatcctcaag ttgccattat acacggtaaa ggaactggtg cccttagaac
    22681 cggggtcaca gaatatctga aaaaccaccg catggtcaaa tcaatccgtt ttggcgcagc
    22741 agcagaaggc ggaaatggcg taacgattgt tgagttcaag taaacaactg agcaaaaaca
    22801 tggctccaaa taggtctagg tgctatactg tgtgtacgaa agtcataagg agtgaattaa
    22861 atcatggtaa aagaaattac agatgcaaca tttgaacaag aaactagtga aggcttagta
    22921 ttaacagatt tctgggcaac atggtgtggt ccttgccgca tggtggctcc agttttagaa
    22981 gaaatacaag aagaacgcgg cgaagcactt aaaatcgtca aaatggacgt agatgaaaac
    23041 ccagaaacac caggaagctt tggtgtgatg agtattccaa cacttcttat caaaaaagac
    23101 ggcgaagtag tagaaacaat tatcggctac cgtccaaaag aagaactgga tgaagtcatc
    23161 aacaaatacg tttaaaatta tgctaaaatg aaagaagctt agaacaaaca ttctaagctt
    23221 ctttttaaat gtgtaactgg agttgataaa atgtcttctg aacatatcca aaataaacta
    23281 gcgcttctgc cggaccaacc tggttgttat ttgatgaaag atagacaagg aaccattatt
    23341 tatgttggga aagcaaaaat tttaaaaaat cgtgttcgat cctatttttc aggaacacac
    23401 gatagtaaaa cgcaacgctt agttcaagaa attgtggact ttgaatatat cgtaacatca
    23461 tccaacgtag aagccttgct actagaaatc aatttgatca aaaaacatga tcctcgtttt
    23521 aatattcgcc taaaagatga taaaacttat ccgtttatta aaatcacgaa cgaacgacat
    23581 ccacgcctaa ttattacccg tcaagtaaaa aaagacaaag ggaaatattt tggtccatat
    23641 ccaaatgtgt atgctgctaa tgaagtaaaa cgtattttag atcgactgta tccattacgt
    23701 aaatgcagta cgctaccaaa taaagtgtgt ttgtactatc acctcggaca atgccttgcc
    23761 ccgtgtgtat ttgacgtgga agcaagtaag tataaagaaa tgcaagacga gatagtcgca
    23821 ttcctaaatg gcggctataa aactgtcaaa aatgatttaa tgaagaaaat gcaagaagca
    23881 gctgaaaata tggaattcga aaaagcgggt gaattccgcg accaaatcaa cgcaatcgaa
    23941 acaacaatgg aaaaacaaaa aatgacgatg aacgatttcg ttgaccgtga tgtctttggt
    24001 tatgccattg ataaaggctg gatgtgcgtc caagtattct tcattcgtca agggaaacta
    24061 attgagcgcg atgtctccca gtttccattt tataatgatg cagatgaaga tttcctcaca
    24121 tttattggtc aattttacca aaaagccaat catattccgc ctaaagaaat ttatttacca
    24181 gatgatgtcg atagcgaagc cgttcaagcg gtcgttcctg acacaaaaat catcgtacca
    24241 caacgcggaa ataagaaaga tctcgtaaaa cttgcataca aaaatgcgaa aattgcctta
    24301 aacgaaaaat ttatgctact tgaacgtaat gaagaacgca cagtcggagc agttgaacgg
    24361 cttggagaag caatgggaat cccaacaccg tcacgcgtcg aagctttcga taactcgaat
    24421 attcacggta cagacccagt ttccgcgatg gtcacattcc tcgatggcaa accaagtaaa
    24481 aatgattacc gtaaatacaa aatcaaaacc gtagaaggac ctgatgatta cgcaacaatg
    24541 cgcgaagtta ttcgacgtcg ttactggaga gtacttaaag aagaactacc aatgccggat
    24601 ttaatcttaa ttgatggtgg taaagggcaa attgatagtg ccaaagatgt cctaacgaat
    24661 gagctaggct tagatattcc agtagcagga cttgcaaaag acgacaaaca ccgtactagc
    24721 caactattat tcggtgacct acttgaaata gtcccactcg aacgaaacag ccaagaattc
    24781 tacctattac aacgaatgca agatgaagtc caccgtttcg ctattacatt ccaccgccaa
    24841 cttcgcagca aaacaggctt ccaatccatt cttgacggca tcccaggagt aggacccggt
    24901 cgcaagaaaa aattacttaa acacttcggc tccatgaaaa aattaaaaga agcatcggta
    24961 gaagaaatta aagaagccgg tgtccctttg aatgttgcag aagaagtgca taaacacatc
    25021 acagcattca atgaaaaagc aaaaaatacc gagcaaaaat gattttcaac acgattttaa
    25081 acgccaataa ctttgatgtt attggcgttt tattgcataa aaattgttac taacatgtca
    25141 gattaaatag cttttacata taataaactt cccttcaaca cataaatgcg ctaaaatata
    25201 aacattgata aaaaagaact aacaaggcag gagggaacga gattgggact agtcgtatta
    25261 aaatttggcg gaacatcagt gagcacggtg gataaaatcg ggaaaacagc agatcaagcc
    25321 atttatgaaa aaaaacaagg aaataaagtc atcgtcgtcg tttccgcaat ggggaaatca
    25381 accgacaaat tagtcgcgat ggcagaagaa attagcgagg caccagataa acgcgaaatg
    25441 gatatgcttc tttctactgg tgagcaaatc acaattgctt tacttgcgat gacattaaaa
    25501 gaaaaagggc acgatgctat atcctataca ggatggcaag cgggaattga aacagaagcc
    25561 gtacatagta atgctagaat tgccgatatt gatagcgctc gtattgaatc tgcgcttgat
    25621 gcgggacaaa ttgttgttgt agcaggtttt caaggtttca cgacagatgg tgaaattact
    25681 acattaggac gaggtggatc agacacaacc gccgtcgcca tcgcttctgc tctaaatgcc
    25741 gtaaaatgcg cgatttgtac ggatgtagtc ggtgtattta cgacagatcc acgctacgtg
    25801 aaaaaagccc aaaagttaga acaaatcacc tatgatgaaa tgttagaatt agctaatctc
    25861 ggtgccggtg ttttacatcc acgctccgtt gaatatgcca aaaatttccg aattccgctt
    25921 gaagtcagag cgagccacga acaagtacca ggaacaatga ttgaggagga tttaacaatg
    25981 gaaaatacca aagtagtccg tggaattgct tttgaagacc aaatcacccg tgtaactatc
    26041 cactggaaac aaaaagaagc aatgcgagtt tctaaagtct ttacaaaatt agcagaaaat
    26101 aatattgatg tagatattat tatccaagga attactggac taggtcacgg taatctatcc
    26161 ttcactatca aaacaagcgc actcttagcc acactagcag ttttagaaga aagcaaagaa
    26221 ttacttcaaa ttgaaaaact agaatccgaa caagatttag cgaaggtgtc cattgttggc
    26281 tctggaatgg taagtaatcc aggtgtagct gcacagatgt ttga
//
LOCUS       DASDXX010000016        26158 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.016, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000016 DASDXX010000000
VERSION     DASDXX010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26158
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.016"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            226..315
                     /locus_tag="U0280_000562"
     CDS             226..315
                     /locus_tag="U0280_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015455298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit F"
                     /protein_id="HEM2270521.1"
                     /translation="MGVVLVIAGIIGLGLLVYLFYVLFRGEDL"
     gene            312..1997
                     /gene="kdpA"
                     /locus_tag="U0280_000563"
     CDS             312..1997
                     /gene="kdpA"
                     /locus_tag="U0280_000563"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEM2270522.1"
                     /translation="MKYIVMQDAFFVVLLLVLAVPLGIYMYKVMIGEKVFLSRVLEPV
                     ERFGYRLMGVSEVGMSAKRYAVSVLAFSAVGFVFVMAVLMLQGFLPLNPEGMKGLSFS
                     LAFNTAASFVSNTNWQAYSGEAALSYFSQSIGLTVQNFVSAATGIAVLFAVIRGFIWK
                     KQKTIGNFWQDLFRVTLYILLPLSLILALLLVSQGVVQSFADYSVVETLENGAKQLIP
                     LGPAASQIAIKQLGTNGGGFFGANSAFPFENPSSFTNLIEMLAILLIPVALVVMFGRA
                     VKDSKQGRAIMTAMMIVFVIGVVAITISEQFAGPHYQGVATSGSMEGKEVRFGVGGSS
                     LFAASTTAASNGAVNAMHDSLTPLGGLVPMFFMQLGEVVFGGVGSGLYGMIGFIILTV
                     FIAGLLVGRTPEYLGKKIEPYDMKMVCLLILVPPLLTLFGTAVAVMMPSVQASVSASG
                     AHGFSEVLYAFTSMGNNNGSAFAGFAADTTFTNMVGAVMMLLARFIPLVAALYLAQNM
                     AGKSSVAASSGTLSTKNGMFIGLLIGVVVLVGALSFLPALALGPIADFFTTFK"
     gene            2009..4054
                     /gene="kdpB"
                     /locus_tag="U0280_000564"
     CDS             2009..4054
                     /gene="kdpB"
                     /locus_tag="U0280_000564"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEM2270523.1"
                     /translation="MMEKGIWKDALIQSTKKLSPKLQVKNPVMLLVYVGAILATSLYF
                     LGFFGISDEKSGYTLAIALILWFTVLFANFAEAIAEGRGRAQADSLKMARKDVLARKL
                     KNIDDKTDVIEIASNDLKKGDIVYVLANEQIPMDGEVIEGAASVDESAITGESAPVIR
                     ESGGDRSAVTGGTTLVSDWLVVRVTAVSGESFLDKMIAMVEGASRKKTPNEIALQILL
                     VTLSIIFLAVSATLLPFTEFASKQAGAGSAISITNVIALLVCLAPTTIGALLSSIGIA
                     GMSRLNQANVLAMSGRAIEAAGDVDVLLLDKTGTITLGNRKASEFLPVDGVTEQELAD
                     AAQLSSIADETAEGRSIVVLAKERFDIRGRDFAEMHAEFVPFTATTRMSGIDYQENTI
                     RKGAADAVRAYVTANGGTYPKECDAIVSKVAGAGGTPLVVVRNNKVLGVIYLKDIVKN
                     GVKERFLDLRKMGIKTIMITGDNPMTAAAIAAEAGVDDFLAEATPEAKLELIREYQRE
                     GHLVAMTGDGTNDAPALAQADVAVAMNTGTQAAKEAGNMVDLDSSPTKLIDIVRIGKQ
                     LLMTRGALTTFSVANDLAKYFAIIPVLFYGIFPQLEALNLMGLTSPTSAILSAIIYNA
                     VIIIILIPLSLKGVKYREMPAGKLLSRNMLIYGLGGLIAPFIAIKLIDMLLTVLGIV"
     gene            4069..4641
                     /gene="kdpC"
                     /locus_tag="U0280_000565"
     CDS             4069..4641
                     /gene="kdpC"
                     /locus_tag="U0280_000565"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
                     /protein_id="HEM2270524.1"
                     /translation="MKRFMQIWKPAVVGFLLLTLMCGVVYPGIVTIFASAAFHDKANG
                     SIIEEKRADGTTGKVGSAEIGQTFTKPEYLIGRAASDGVATNLNPTSEEQKQLVEKRI
                     AWWHKLDPTNNRVIPMDLVTASASGVDPDISEAAAAYQVDRISRERGISTKQVKEIIA
                     EHTSDRLLGFWGEPTVNVLQVNLALDRLKM"
     gene            4657..7347
                     /locus_tag="U0280_000566"
     CDS             4657..7347
                     /locus_tag="U0280_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HEM2270525.1"
                     /translation="METNRPSPDALLVNLQEETDSSVGKLKIYFGFAAGVGKTYAMLS
                     DAKDQLAAGVDVVAGYIEPHAREETLRMLEGIPIIPPKAITHKNIALKEFDLDEALKR
                     KPELILVDELAHTNASGVRNKKRFQDVEELLQAGIDVYTTVNVQHIESLNDIVEGITK
                     VAVRETIPDYVFDEADRVKLIDIEPDELLKRLEQGKIYQPARAKTAMQNFFTRENLKL
                     LREIAMRKAADRISHEYDQTGVYPEKRASSKWLVCIGTSPSSAKLIRWTARTAEAFRA
                     PWTALYIENEENDYMTKAEKKCLRETMELAERLGAEIVTLAGHDIAETVAEYARLTGV
                     TNIVVGKSRRRMGLRSLFEDDFEDRLITHLDNVDMHIIPSSQPKTKKRRMKMRFKSFL
                     TWHDMAKMILLLTLATAICVGLSEFGIGDQNVIMVYILSVLIISRVTSGYVYGVMGSI
                     IGVMLFNFFFTTPLYTFNTIQAGYPVTFGIMLLVALITSALTVRIKTQASLAVERERR
                     TEVLYEINKRLLVTRNLKGIIDLTNEYILHLFSRSVIFYSADPAKSNKGIFVQAEGKE
                     DASALLSADEEAVAHWVFKNKKRAGAGTDTLMGAFGYYMPVMSQGKVLGVIGVSCSPE
                     DGPLTQDNRIFLRMISSQVALALERQYLSEEQRQIVIESAKEKMRSNLLRAISHDLRT
                     PLTGIVGASSALLEKETELDKETEHNLIKGIKDDSGWLIRMVENLLSVTRISEGLVSL
                     ERAPEAVEEIVGEAVGRIKKRFADRTIHVKVPRDLLMVPMDGTLIEQVLINLMENALR
                     HGGTGAEVWVDVTKTKQSAIFSVRDNGKGIPEKRLPDLFDTFAVEARERSDMSRGLGL
                     GLSICMSIIRAHDGTLEAKNNKHGGATFWFTLPLDGGDGK"
     gene            7344..8039
                     /locus_tag="U0280_000567"
     CDS             7344..8039
                     /locus_tag="U0280_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2270526.1"
                     /translation="MNSKRLVLIVEDEEGISNFISAVLTASDYSVIKAVNGKEALEQT
                     ASHSPDVVLLDLGLPDVEGLDVLRDIRVWSKVPIIVVSARDHEREKVTALDLGADDYI
                     TKPFGTSELLARIRTALRHIQPSSKEAPNDHIIRIQDLYIDDDRRLVKMGDKEIHFTP
                     IEYKILLLLARHAGKVLTHDFIIREIWGPYPSENQALRVNMSNIRRKIEQNPAEPAYI
                     LTEVGVGYRMAEE"
     gene            8080..8892
                     /locus_tag="U0280_000568"
     CDS             8080..8892
                     /locus_tag="U0280_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2270527.1"
                     /translation="MHKTIRSVDVYYEKYGEGIPIIMIHGFGPDSQLMIGCMEPVFDK
                     ESPFSRIYVDLPGMGKTENYDSIQNADHVLTLLLEFIEAVIPGEQFVLAGESYGGYLA
                     RGIAAKMPDRVLGVLLICPVIYPEKERRTLPEQKVMYQDDTFVRSLSKEDRAYFSKSG
                     VILTARNWNRFLAEVMAGMINADGEFLDRLSANYALSFDPDEKAQFDVPALFLFGRQD
                     DHVGYADGLTLLEKYPHASIAILDFAGHNLQIEQPKIFTTMVEDFLFRVKPE"
     gene            complement(8894..10150)
                     /locus_tag="U0280_000569"
     CDS             complement(8894..10150)
                     /locus_tag="U0280_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEM2270528.1"
                     /translation="MHRAVIFCASILNRFFASVECVKRRLNPLEAYLVVMSNADRAGG
                     LVLAATPKMKQEHHIKTGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFRRYVPA
                     EFIHVYSIDECFLDITGSHLLFGSTEEIVRKIQCDILEELRLYVTVGIGDNPLLAKLA
                     LDNVAKNRDDGIAEWRYEDVPETIWKIRHLDDVCGIGRRTAVRLQKMGIFNMYQLSQT
                     PPQVLKNAMGVVGEQLYYHAHGIDYSLLNEKYVPVSKSYGKSQILEKDYHVPAEVEIV
                     IREMVEEVAMRLRQNHVDTAVIHLSIGYSKYSIKKGFSHQAKIPPTSSSHALIPYFLQ
                     LFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDATRTLNHEQLEITVDKIRSRYGFK
                     SLMHASSLLNGATGLKRSEMVGGHKG"
     gene            complement(10163..10504)
                     /locus_tag="U0280_000570"
     CDS             complement(10163..10504)
                     /locus_tag="U0280_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270529.1"
                     /translation="MSYQDRGMKKWGGFLLSEHTEAMQDAEPTLVWKEAMTTEFIESV
                     LASAMTHQSTLVIQKKPLNPESAPENDIIGRISGVENNTIYIKNSEGTVPLSFSAIRN
                     VEERSVEKWYK"
     gene            complement(10703..11158)
                     /gene="rpiB"
                     /locus_tag="U0280_000571"
     CDS             complement(10703..11158)
                     /gene="rpiB"
                     /locus_tag="U0280_000571"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2270530.1"
                     /translation="MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPEAPESVD
                     YPGLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHN
                     DTNVLALGARVIGPGLAEDIVKIWLETAYEGGRHANRVGQITAYEDSQA"
     gene            complement(11204..11674)
                     /locus_tag="U0280_000572"
     CDS             complement(11204..11674)
                     /locus_tag="U0280_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM2270531.1"
                     /translation="MSAYKRILVGVDGSNEAEAALRRAVQFAKMDGATLGIGFVADVR
                     RIAPLIDYEQTYAKKAKAYGEELVEMYKKEAEKAGVSHVETFVHFGTPKTTFNKKITR
                     NFEPDLILVGATGLSATEQFILGSVSEYTAAHAPCDVIIVHAKPWRNRKTVEKL"
     gene            11790..12596
                     /locus_tag="U0280_000573"
     CDS             11790..12596
                     /locus_tag="U0280_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2270532.1"
                     /translation="MAKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFP
                     GNNLVVPDLCADIIFTIDSKTGLVTDAIFVGVSDAPFESDDESNTELFAVRFYAWSLF
                     LFVEQDLTGSMNRVKEPEEMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGK
                     QVHPDFLNGIDKLLQNPNQLALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQAL
                     YENPSVPGAELAYLHGFTDQAHLIKQFKRYSNHTPEEMKQIFLQNVANIQ"
     gene            12642..13010
                     /locus_tag="U0280_000574"
     CDS             12642..13010
                     /locus_tag="U0280_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2270533.1"
                     /translation="MINEFVCTNISTQDPAALVAFYHEKLGIPIVFEGYDNYDGAKLG
                     FSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPRVAEWGG
                     RELNLLDPDGNKIMILEPAQ"
     gene            13007..13369
                     /locus_tag="U0280_000575"
     CDS             13007..13369
                     /locus_tag="U0280_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM2270534.1"
                     /translation="MSDEFAWIQKEISGLKGVQYSFKEEWGAERYHVLDQLMAMRGTN
                     KEGQPILTLKCDAEKSEQLRAENRAIVPGYYMNKRVWISVLLEEERDKDLIRALIQHA
                     YSEAKNKLPKYKQAELFD"
     gene            13443..14255
                     /locus_tag="U0280_000576"
     CDS             13443..14255
                     /locus_tag="U0280_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270535.1"
                     /translation="MDINMFILYFFIYSVLGWAWEEIFCSISEKKLVYRGFLYGPYCP
                     IYGFGVTTVLMMILPFQNNLWALFIFSMIICTVIEYVTATILEALFHTTWWDYHNWPL
                     NVKGRICLPISIFWGFACIIVVRFLHPLVTEFADWILSWGGWIIPALIVVLMLIDTIK
                     SVTSMLSFQKALAEFNEKLTAQANELKASVKERAKEFEEGLLKKQENVDMKIAEIEAK
                     RKQDKELAASMRKLKFNERRMLKSFPKMKVKRAAPFKNFNKSLLRVDKQKRK"
     gene            14625..16694
                     /locus_tag="U0280_000577"
     CDS             14625..16694
                     /locus_tag="U0280_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2270536.1"
                     /translation="MYLDERSNSLLKELLRHPDTSSTNLQAKFGLTRRQVDYSFQKIN
                     NWLEEQTYPKIHRAANGRFIVEPDLFQIIGEEDGEKTDWYIPSEKERASLIILMLTTG
                     SEELSLNHFISELEVSKNTVLRDLKLVQKTLEKFNLEVKYSRMRGYLIDGDEWNQRTA
                     LIYAAEHIIESFGGEEYLQDFMQVDEARIKELREKLEQVEHHLNLHFIDNKMQILPYI
                     LEAVFRRMKKGQTITTSFLIDYNELSDTREYGAAEIFIEEEPNMPEAERMYITLQLLT
                     SNVLPKQYLKSEETHKLRLALEQVLSEFEKKACIQLVDKESLLEKLFAHIKPAYYRIK
                     YHLTTDYSILDKIDQEFQAVHYIVKESLAPLERFIGSKVPENESIFITLFIGGHLIES
                     TEKLQTRLKAVVVCPNGLSISRLMEKTLRSLFPEIFFYQAMSIREFEQTKLGYDIVFS
                     AVPLSTDKKFFLINQLMDGKERLELRRRVMRAVYLVDEVNISVDQLMKTISKFADIKD
                     AARLEKVLADYLMPVPEENTSKHEGKSTLADLLEVTRITRKKSVKDWHEAIYHAALPL
                     LSAGVVEPAYVEEMKRQYPAPIMNIILRNTIAIPHAETEKGVNSLGMSLLYLEEGLPL
                     EGGKELHFIVVIAAIDKNAHFTALLQLMELSENKKELKKLADAANTEEMHQIIKNFTD
                     LETKKTM"
     gene            16728..17192
                     /locus_tag="U0280_000578"
     CDS             16728..17192
                     /locus_tag="U0280_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2270537.1"
                     /translation="MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLT
                     RLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAGQTVEA
                     NLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETITV"
     gene            17250..17531
                     /locus_tag="U0280_000579"
     CDS             17250..17531
                     /locus_tag="U0280_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2270538.1"
                     /translation="MGQFKILVACGAGIATSTVVTDRVERLVKENNVDAEVKQIKISE
                     AASMQDGADLIVSTTILPTTYKIPAIIATSYITGMGMEELDEEILAHLK"
     gene            17592..18863
                     /locus_tag="U0280_000580"
     CDS             17592..18863
                     /locus_tag="U0280_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HEM2270539.1"
                     /translation="MDTLLSGVQYVLNLGPTVILPIMIFFIALIFRVPAKKALRSAIT
                     IGIGFVGINLVISLLSSNLGPAAQQMVERFGLNLTIIDAGWPAAAAASWASPVAAILI
                     PICLVVNLALIFFKVTKTLDIDIWNYWHFIAAGATGYIVTGGNWWFAILCAIIYEVAV
                     LWMADRTQPMVEEFYGLKGISLPTGSTAAFGFIGIPVGWLIAKIPGIKNIHVDPETIQ
                     KRFGIFGEPMMMGLILGIAIGILAGYDVGAVAQLGMSMGAVMFLMPRMVKILMEGLIP
                     ISESAREFMKSRFKGRELYIGLDAALSIGHPANISTGLILVPITLFLAVIIPGNKVLP
                     FGDLATIPFYVSFVVASRKGNILHSVLAGTVVIALALLMATDFGLVHTEMMKGVYEFP
                     KGATQVSTLDMGGNFFNWVILKFSQAWAAIF"
     gene            18900..19952
                     /locus_tag="U0280_000581"
     CDS             18900..19952
                     /locus_tag="U0280_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HEM2270540.1"
                     /translation="MRAAVLYENNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKM
                     QTRWKYPLPAVMGHEFAGVVTEIGSEVTNVAIGDRVAGIPLEPCMECNYCKAGDFALC
                     DNYRMVGSHFHGGFAENVVMKADNVISIGDLDFEEGAMIEPLAVSMHGVLGIQPRLGD
                     TVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNEDLKER
                     VFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFR
                     RELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSR
                     EHDYNKVMILPQKGDD"
     gene            19954..20985
                     /locus_tag="U0280_000582"
     CDS             19954..20985
                     /locus_tag="U0280_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEM2270541.1"
                     /translation="MKAVVKTNPGYDQMELRDVEEPQVYGDKVKIKVAFTGICGSDIH
                     TFKGEYKNPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKERD
                     YNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKT
                     TIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSDRLRLAKELGMDRIVDTL
                     KEDLAEVVLGMTDGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDE
                     ESIIQREIAYIGSRSQKPSSWILALDLLANGKINTDKMITKVYGLDDWREAFEAVMAG
                     NEIKVLVKS"
     gene            21180..21620
                     /gene="rpiB"
                     /locus_tag="U0280_000583"
     CDS             21180..21620
                     /gene="rpiB"
                     /locus_tag="U0280_000583"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2270542.1"
                     /translation="MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDESVDFPS
                     YAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSN
                     VLCLGERVIGEGLALLIVDTWLEASFAGDRHKRRLDKITELERK"
     gene            21629..22303
                     /locus_tag="U0280_000584"
     CDS             21629..22303
                     /locus_tag="U0280_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2270543.1"
                     /translation="MRKIAASIMCADQLHLGEELRRLESAGVELLHCDVMDGVYVNNL
                     ALGPEYLEIVRNNTEIPLDIHLATITPLKYIDMFGPVKPEYISFHVEVAEDVSEVIRK
                     IRSYNVKPSIAINPETPIEAIYPYLDDVEMVLMMTVNPGFAGQKFQTDVLQKLHDLKA
                     KLAGKVHAPLIEVDGNINKETVGLMRDCLPDIYVLGTSALFHDRDKTSYAERLVHIWS
                     DVEKHV"
     gene            22337..24352
                     /gene="tkt"
                     /locus_tag="U0280_000585"
     CDS             22337..24352
                     /gene="tkt"
                     /locus_tag="U0280_000585"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2270544.1"
                     /translation="MKKTLDRQAVDTIRSLSIDMIEKANSGHPGMPMGAAPMAYMLFA
                     KHLVFNPANPEWFNRDRFVLSAGHGSALLYSMLHLFGYDVKMEDLKQFRQLDSLTPGH
                     PEFGWTAGVDATSGPLGQGIGMAAGMALAESHLAAEYNQPNYPIVDHYTYAICGDGDL
                     MEGVASETASLAGHLGLGKLIVLYDSNDICLDGDLSATFSENAADRFRAYGWQVLRVE
                     DGNNLAAIQEKIVQAKLETSKPTLIEVKTVIGYGAPTKAGSSASHGAPLGEKEANGAK
                     EHYEWAEEPFTVPAEVRDYLRNYKARGEKLEGAWNTMLANYKKEFPELASQLDRVLAG
                     EVAADWNANLPTFEAGTNVATRSASGKMINAIAAELPELFGGSADLGCSNKTFIDASP
                     AYSIQDPAGKNIWFGVREFAMGAMLNGMALHSGLRVFGSTFFVFSDYVRPAMRMAALM
                     QLPVTYVFTHDSIAVGEDGPTHEPIEQLASLRAMPGLTVIRPADAKETRAAWEIAATN
                     TNGPIALVLSRQDLPVLENAQEEVDAGVDKGAYIVAPANSSKPDAIIIATGSEVSLAI
                     EAKAELAKKDIDVSVVSLSSWERFEKTTDAYKESILPKEVTARFAIEAGATFGWKEFI
                     GSEGDMLGIDHFGASAPAKDLFNAYGFTPENVADRVETVIAKAGVRV"
     gene            24349..24993
                     /locus_tag="U0280_000586"
     CDS             24349..24993
                     /locus_tag="U0280_000586"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2270545.1"
                     /translation="MTFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNL
                     TFGIDMVEQIKKTATIPLDVHLMLSNPENYIEKFAAAGAHIISVHIEAAPHIHRVIQQ
                     IKAAGCKAGVVLNPGTPASVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDH
                     WRRENNGSYVIEVDGGVNAETAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA"
     gene            complement(25049..>26158)
                     /locus_tag="U0280_000587"
     CDS             complement(25049..>26158)
                     /locus_tag="U0280_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2270546.1"
                     /translation="NKLEKITYSTALKNIPSQAFLANNLKTVTTPATVESIDASAFEN
                     NFITNITIQNPNLQMAYQAFAAQTVLSTLIVPSNHILPIENYIQFQDASAHLTTDNLF
                     ITDLANGITYNQAEKALNFSAEPLESTFSLFTGTNRFDSYYDISEYGPSGKPFIYFKY
                     TKPVLVSYKDASGNELATSTRLDGSIGENYVTTPKIIDGYTLKETPGNATGQFSETLQ
                     NVTYIYEKTAVQNGTVTVKYQDESGKTLAKDTVLTGEVINTYQTKSKDIAGYKLQKVE
                     GNESGTFSTTPATVTYIYEKIANSDNTNTNGEMTDNTTLSTNDTVISSEATKKVDKNT
                     SNILPTTGDSKDALFFALGSLLTLLSTSFFFFKRS"
BASE COUNT         7880 a         4672 c         6052 g         7554 t
ORIGIN      
        1 taacacttat tatatatgca agtaccgtgc caactttaaa tgtggctata aaagggtttt
       61 cattttgttt tttgcttaca cattggcttt ttttgtgtgt aaattttaca cacatagaga
      121 tattaacgga atctttatgc ggagctttag aatcttaaca ctgtctttat gcgtttgttg
      181 gtaggattag tggtggaaag agtacggtga aggggtgaac ggaaaatggg tgttgttcta
      241 gtaattgctg gaataatcgg tttaggtttg ttggtatatt tattttatgt gttatttaga
      301 ggtgaggact tatgaagtat atcgtgatgc aagatgcgtt ttttgttgta ttgttattag
      361 ttttggcggt gcctcttgga atttatatgt ataaggtgat gattggggaa aaggtatttt
      421 tgtcacgagt gcttgagccg gttgagcggt ttggttatcg attgatgggt gtgagtgagg
      481 ttggcatgtc ggcgaagcgt tatgcagtat ccgtacttgc ttttagtgca gttggctttg
      541 tatttgtaat ggcggtgttg atgctacaag gctttttacc gctcaacccg gaaggtatga
      601 aaggacttag ttttagtctt gcatttaata cggcggcgag ttttgtgtcg aatacgaact
      661 ggcaagctta ttctggtgag gcggcgttat cttatttttc gcagtcgatt ggtttaacgg
      721 tgcagaactt tgtttcggca gcgacaggga ttgcagtatt atttgcggta attcgtggct
      781 ttatatggaa gaaacagaaa acgataggaa atttttggca agatttattt cgagtgacgc
      841 tatatattct attaccactt tcgcttattt tggcgcttct tttagtgtcg caaggagtgg
      901 tgcagtcatt tgctgattat tcggttgtag agacgcttga aaatggagca aaacaattga
      961 ttccgcttgg tccagctgca agtcaaattg cgattaaaca actgggaacg aatggtggag
     1021 gctttttcgg ggcaaattcg gcgtttccgt ttgaaaaccc atctagtttt actaatttaa
     1081 tagaaatgtt ggcgatttta cttatcccag tggcgcttgt tgtgatgttt gggcgtgcgg
     1141 tgaaggatag taagcaagga cgcgcgatta tgacagcgat gatgattgtt tttgttattg
     1201 gtgttgttgc gataactatc tccgaacaat ttgcaggtcc acattatcaa ggtgttgcga
     1261 cttctggcag tatggaagga aaagaggttc gttttggtgt tggcggttcg tcgctttttg
     1321 cagcttccac gacggcagcc tcgaatggag cggtgaacgc aatgcacgac agtttgactc
     1381 cgcttggggg actggtgccg atgttcttta tgcaactcgg tgaggttgtt tttggcggtg
     1441 ttggtagcgg gctttatggc atgattggtt ttattatttt gacggtgttt attgcggggc
     1501 ttttggttgg gcggacgccg gaatatttag ggaagaaaat tgaaccttat gatatgaaaa
     1561 tggtttgttt gcttattttg gttccgccgc tgttgacttt gtttggaact gcggttgcgg
     1621 tgatgatgcc aagtgtgcaa gcttctgttt cggcgagtgg ggcgcacggt ttttccgagg
     1681 tcctctatgc atttacttcg atgggaaata ataatggtag tgcttttgct ggatttgcgg
     1741 cggacacgac gtttacaaat atggttggcg cagtaatgat gttacttgct cgttttattc
     1801 cacttgttgc ggcgctttat ttagcgcaaa atatggctgg aaagagttcg gttgcagcga
     1861 gcagcgggac gttatcgacg aaaaatggca tgtttattgg tcttttaatt ggtgttgtgg
     1921 tacttgttgg cgcacttagt ttcttgccag cacttgcgct tggaccgatt gcggacttct
     1981 ttacaacttt caaatgaggt gaatggaaat gatggaaaaa ggtatttgga aagatgcgct
     2041 gattcagtcg acgaaaaaac tgtctccaaa actgcaagtg aaaaatccgg tgatgttgct
     2101 tgtttatgtt ggtgcgattt tggcaacgag cctttatttt ctcggtttct tcgggatttc
     2161 agatgagaag tctggttata cgctagcaat tgcgctgatt ttatggttta cagtgttatt
     2221 tgcgaatttt gcagaggcga ttgcggaagg tcgcggtcga gcacaggcgg atagtttgaa
     2281 aatggctcga aaagacgttt tagctcgaaa attgaagaat attgatgata aaactgatgt
     2341 gatcgaaatt gcttcgaatg acttgaaaaa aggcgacatt gtgtatgtcc ttgcgaatga
     2401 acaaattccg atggatggcg aggttattga aggtgcggct tcagttgatg aaagtgcgat
     2461 aactggggag tctgcacccg taattcgaga gtctggcggg gatagaagtg ctgtgacggg
     2521 tggaactacg cttgtttctg actggcttgt tgttcgtgtg acggcggtct ctggagaaag
     2581 tttcttagat aaaatgattg caatggtgga aggagcttca cggaaaaaga cgccgaatga
     2641 gattgcgcta caaattttgc ttgtaacgct ttcgattatt tttttggcag tttcagcgac
     2701 gcttttacca tttactgaat ttgcgagtaa gcaggcgggt gctggatcgg caatttcgat
     2761 tacgaatgtg attgctttgc ttgtttgttt ggcgccaact acgattggtg cactactttc
     2821 gtcgattgga attgcaggga tgagtcggtt aaatcaagcg aatgttttag cgatgagtgg
     2881 tcgtgcgatt gaggcagctg gtgatgtgga tgtgcttttg ctcgataaaa ctgggacgat
     2941 tacactggga aaccgcaaag caagcgaatt tttgccagtg gatggtgtga cggaacaaga
     3001 gctggcagat gcggcgcaac tttcctcgat tgcggacgaa acagcggaag gcaggagtat
     3061 tgttgtatta gcgaaagaac ggttcgacat tcgcggccga gattttgctg aaatgcacgc
     3121 agaatttgtt cccttcactg caacaacccg aatgagcgga attgactatc aagaaaatac
     3181 gattcgaaaa ggtgcggcgg atgcggttcg tgcttacgta acggcgaatg gcgggacgta
     3241 cccaaaagag tgtgatgcaa ttgtgagcaa agttgctggt gctggtggta caccgcttgt
     3301 agtagtccga aataacaaag tgctaggcgt tatttattta aaagacatcg tgaaaaatgg
     3361 agtgaaagaa cgtttccttg atttacgaaa aatgggtatt aaaaccatta tgattaccgg
     3421 tgataaccca atgactgcgg cagccattgc ggcggaagca ggggtcgatg attttctagc
     3481 agaagcaact ccagaagcaa aattggaatt aattcgtgaa tatcaacggg aaggtcattt
     3541 ggttgcaatg acaggtgatg gcacgaatga cgcaccagct cttgcacaag cggatgttgc
     3601 tgttgcgatg aatacaggaa cacaagcggc aaaagaagct gggaatatgg ttgatctgga
     3661 ttctagtcct actaaattaa ttgatattgt gcggattggc aaacaacttt taatgacgcg
     3721 tggtgcactg acaacattta gtgttgctaa tgatttagcg aaatactttg cgattattcc
     3781 agtgctgttt tacggtattt tcccacaact tgaagcactt aatttaatgg gattaaccag
     3841 cccgacgagc gctattttat ccgcgattat ttacaatgcg gtgattatca ttattttaat
     3901 tccgctttct ttaaaaggcg tgaagtatcg tgaaatgccg gccgggaaat tactgagcag
     3961 aaatatgttg atttatggtc tgggcggttt gattgctcca tttatcgcga ttaaattgat
     4021 tgatatgctg ttaactgttt taggaatcgt ttaagagggg gagaaaacat gaaaagattt
     4081 atgcaaattt ggaagccggc agtagttgga tttctacttt tgacattgat gtgtggtgtg
     4141 gtttatccag gtattgtcac tatttttgca agtgcagctt tccacgacaa agcaaatggc
     4201 agtataatag aagaaaaacg agcagatggt acgaccggaa aagttggttc tgctgaaatt
     4261 ggccaaacgt ttactaagcc tgagtacttg attggacggg cagcaagtga cggggtggcg
     4321 acaaacttaa accctactag cgaagaacaa aaacaattag tagaaaaacg aattgcttgg
     4381 tggcataaac tagatccgac gaacaatcga gttattccaa tggatctcgt aacagcatca
     4441 gcaagtggcg tggatccgga tatttcagag gctgctgcgg catatcaagt agaccgaatt
     4501 tctagagaac gaggcatttc caccaaacaa gtcaaagaaa ttatcgcaga acatacaagt
     4561 gaccgattgt taggcttttg gggtgagcca actgtgaacg tcttacaagt gaatttggca
     4621 ttagatagat tgaaaatgta agttggaggc gagtatatgg aaacgaatcg tccaagtccg
     4681 gatgcgctac tggtgaattt gcaagaagaa acagattcat ccgtgggtaa attaaaaata
     4741 tattttggct ttgcggcagg tgttgggaaa acatatgcca tgttaagtga cgccaaagat
     4801 caattagcag caggtgtgga tgtcgtggcg ggttatattg aacctcatgc tcgcgaggaa
     4861 acgctgagaa tgttagaagg aatcccgatt attccaccaa aagcaattac tcacaaaaat
     4921 attgcgctca aagaattcga tttggacgaa gcgttgaaac ggaagccgga acttattttg
     4981 gtagacgaac tcgcacatac gaacgcatca ggtgtacgca ataagaaacg tttccaagat
     5041 gtggaagaat tgcttcaagc gggaattgat gtgtatacga ctgtcaatgt gcaacatatt
     5101 gaaagtttaa acgatattgt agaaggcatc accaaagtag ctgttcgcga aacgattcct
     5161 gactatgttt ttgatgaggc ggaccgagtt aaattaattg atattgaacc cgatgaactt
     5221 ctaaaacggt tagaacaggg taaaatttat caaccggcgc gcgcaaaaac agctatgcag
     5281 aacttcttca ctagagaaaa cttaaaactc ttgcgtgaaa ttgcgatgcg aaaagcggcc
     5341 gaccgaatta gtcacgaata cgatcaaaca ggtgtttatc cagagaaacg ggcgagtagt
     5401 aaatggttag tctgtattgg aacgtcgcct tcatctgcaa aactcattcg ctggacagcg
     5461 cgcactgccg aggctttccg cgcaccatgg acggcccttt atattgaaaa tgaagaaaat
     5521 gattatatga ccaaagcaga gaaaaaatgt ttacgggaaa cgatggaact cgctgaacgg
     5581 cttggcgctg aaattgtcac cctcgccgga catgacattg cagaaacagt agctgagtat
     5641 gcccggttga ctggtgtgac aaatatcgtt gtcgggaaat cgcgtcgccg catgggttta
     5701 aggtctttat ttgaagatga ttttgaggat cgtctcatta cgcaccttga taacgttgat
     5761 atgcatatta tcccctcgag ccaaccaaaa acgaaaaagc gtcgaatgaa aatgcgtttt
     5821 aaaagttttt taacctggca tgacatggcg aaaatgattt tacttctaac attggcaacg
     5881 gcgatttgtg tcggtttaag tgaatttggc atcggtgatc aaaatgttat tatggtatat
     5941 attttatccg tgttaattat ttctcgtgta acaagcggct atgtttatgg cgttatgggt
     6001 tctatcattg gtgttatgtt atttaatttc tttttcacga caccacttta tacgtttaat
     6061 acaattcaag cgggctatcc ggtgacgttc ggaattatgc ttttagtcgc tcttattacg
     6121 agtgcgctaa ctgtccgaat taaaacccaa gctagcctgg ccgttgagcg agaacgtcga
     6181 accgaagtgc tttatgaaat caataaacgg ctattagtca cccgtaattt aaaaggaatt
     6241 atcgatttaa ccaacgaata tattttgcat ttatttagcc gttccgttat tttttattct
     6301 gcggatcctg ccaaaagtaa taaagggatt ttcgtgcaag cagaaggaaa agaagatgcg
     6361 agtgcgcttc ttagtgcgga tgaagaagcg gttgcccact gggtatttaa aaataaaaag
     6421 cgggcgggtg ctgggacgga tacgttaatg ggggcatttg gttattatat gccagtgatg
     6481 tcacagggga aagtgcttgg tgttattggt gtttcttgct ccccagaaga tggtccactt
     6541 acacaagata atcggatctt tttacgaatg attagctctc aagtggcact agctttagaa
     6601 cggcaatatt tatctgaaga acaacgccaa atcgtcatcg aatcagcaaa agaaaaaatg
     6661 agaagcaatt tacttcgggc aatttcgcat gatttaagaa caccgctcac tggcattgtt
     6721 ggagcaagtt ctgccttact tgaaaaagaa actgagctag ataaagaaac ggaacataat
     6781 ttaattaaag gtattaaaga tgactctggc tggctcattc ggatggttga gaatttgctt
     6841 tctgtgacga gaattagtga agggttagtg agtttggaac gagctccaga agccgtagaa
     6901 gaaattgtag gtgaggctgt cggtcgaatc aaaaaacgtt tcgcggaccg aacaatccat
     6961 gtcaaagtac cgcgcgacct tcttatggtt ccgatggatg gcacgttaat tgagcaagtc
     7021 cttattaatt taatggaaaa tgcgctacgt catggtggaa ctggtgcaga agtttgggta
     7081 gacgtgacga aaacgaagca aagtgcgatt tttagtgttc gtgataatgg aaaagggatt
     7141 ccggaaaaac gcttgccaga tttatttgat acttttgctg tggaagcgag agagcgttct
     7201 gatatgtcac gcggattagg acttggttta tcgatttgta tgtcgattat tcgagcgcat
     7261 gacgggactt tagaagcgaa aaataacaaa catggcgggg cgacattctg gttcactttg
     7321 ccactagacg gaggagatgg aaaatgaaca gcaaacgact tgtgctaatt gtggaagatg
     7381 aagagggtat cagtaatttt atttcagctg ttttgactgc gagtgattac tcggtgatta
     7441 aagcagtgaa tggaaaagaa gcgctagagc agacagcaag ccattcgcca gatgttgtgc
     7501 tactcgacct aggtttgccc gatgtagaag gactagacgt gctccgtgat attcgtgttt
     7561 ggtcaaaagt gccgattatt gttgtatccg cgcgcgatca cgaacgagag aaagtgacgg
     7621 cacttgacct tggtgcagat gattatatta cgaaaccatt cggcacatcg gaactactgg
     7681 cgcggattcg aactgcccta agacacattc aaccaagcag caaagaagcg ccaaatgatc
     7741 atattattcg cattcaagac ctgtatattg atgacgaccg ccgacttgtc aaaatgggcg
     7801 ataaggaaat tcattttacg ccaattgaat ataaaatttt gcttctatta gctcgccacg
     7861 ccggaaaagt ccttacgcat gattttatta ttcgcgaaat ttggggacct tatccaagtg
     7921 aaaaccaagc acttcgggtc aatatgagta atatccgacg taaaattgaa caaaatccgg
     7981 cagaacctgc atacattttg acagaagttg gggttggata ccggatggca gaagaataat
     8041 aatatgttat gataaaaata aacgccagga ggaattaata tgcataaaac aatccgtagc
     8101 gtagacgttt attatgaaaa atatggtgaa ggaataccga taataatgat tcatggtttt
     8161 ggtcctgatt cgcagctgat gattggttgc atggagccgg tctttgataa ggaaagtcca
     8221 ttttcacgca tttatgtgga tttgcctgga atgggaaaaa ccgagaatta cgattcaatc
     8281 caaaatgctg accatgtact caccctttta ctagaattta ttgaagcggt aattccggga
     8341 gagcaattcg tactcgccgg agaatcgtat ggtggttatt tagcccgcgg aatcgcagcg
     8401 aaaatgccag atagagtact tggagtctta cttatttgcc cagtcatcta tcctgaaaaa
     8461 gaaagaagaa cgctacccga acaaaaagtc atgtaccaag atgatacgtt tgtacggtcg
     8521 ctatcaaaag aagaccgagc gtacttttca aaaagtggcg ttattttaac agcaagaaac
     8581 tggaatcgtt tcttggcgga agtgatggcg ggaatgatta atgcagatgg agaattttta
     8641 gaccgattat ctgcgaacta tgcgctgagc tttgatccag acgaaaaagc gcaattcgat
     8701 gtgccggcat tattcttatt tgggcgtcaa gatgatcatg tgggatacgc agacgggctt
     8761 acattgcttg aaaaatatcc acatgcgtcg attgctatcc ttgattttgc aggacataat
     8821 ttacaaatcg aacaaccaaa aatatttaca acaatggtag aggatttctt gttccgcgtg
     8881 aaaccagaat aagttaacct ttgtgaccac caaccatttc agaacgtttt aagccagtcg
     8941 ctccatttaa taaactgctt gcgtgcatga gggatttaaa cccataacgc gaacggattt
     9001 tgtcgaccgt tatttctaat tgctcatgat ttaaagttcg agtagcatcc tcaaataaat
     9061 tgagctgcaa ccctgttttc aaagtaatct taccgcatga aatagcaatg gagcgcacag
     9121 gttcgcgttc atcgtaacgt ctaaatagtt gcaggaaata aggaataagc gcatgactac
     9181 tactagtagg agggatttta gcttgatggc tgaatccttt ttttatgctg tatttactgt
     9241 agccgatact tagatgaata acagcagtat ccacatgatt ttggcgtaaa cgcattgcta
     9301 cttcctcaac catttcgcgg atgacaatct ctacttcggc cggcacatga tagtcttttt
     9361 caagaatttg gctttttccg tagcttttac taactggaac atatttttca tttaaaagac
     9421 tataatcgat gccgtgagca tgataataaa gttgctctcc gactacaccc attgcgtttt
     9481 ttaacacttg tggcggcgtt tggcttagtt gatacatatt aaagattccc attttttgca
     9541 ggcgaacagc agtccgacgc ccaattccgc acacatcatc caaatgtctg attttccaaa
     9601 tggtctcggg aacgtcttca tagcgccatt cagcaatgcc gtcatcccgg tttttagcca
     9661 cattatcgag cgcgagtttg gcaagaagag ggttgtcgcc gattccaact gtaacgtata
     9721 gccgcaattc ttctaaaata tcacactgga ttttgcgaac aatttcttcc gtgctaccga
     9781 ataacaaatg cgatccggtg atatctaaaa aacattcatc aatactataa acatgaataa
     9841 actcagcggg aacataacgt ctaaaaatgg cttgaatcat cgcatttact tttagataaa
     9901 gtttcattcg tgggggtgcg ataataattc gtttatccca ggtgggcagt tcatacattc
     9961 ttgagccggt tttgatgtga tgttcttgtt tcatttttgg agtggcagct aaaacaagcc
    10021 cgccagcccg gtcggcgtta ctcattacta ctaaatatgc ttcaagtgga ttcagccgac
    10081 gtttgacaca ttcaactgag gcgaaaaaac gatttaatat cgatgcacaa aatatcacgg
    10141 cgcggtgcac ggctataatc ttctatttgt accatttttc gacactcctt tcttctacgt
    10201 ttcgaattgc agagaaggaa agcgggacag tcccctcaga gtttttaatg taaatggtgt
    10261 tgttctccac gcctgaaata cgaccaataa tatcattttc aggagcagat tctgggttta
    10321 atggcttttt ctggataaca agcgtagact gatgtgtcat cgcgctagct agcacacttt
    10381 cgataaattc tgtagtcata gcttctttcc atactaaagt tggttcagcg tcttgcattg
    10441 cttctgtatg ctcgcttaat aaaaaaccgc cccatttctt catgccgcga tcttggtagc
    10501 tcatatgatg acacctccaa tatttttaaa taattagctg ttgcttaaat atattatacg
    10561 aacaaacgtt cttatttaca atgtgtaaat atcctcattt atgctagcaa aacgggaata
    10621 aattactatt tgtgaactat taataaagtg gacataaaaa aagaccaagc ctgtaaaatt
    10681 agacttggtc gttattattt ttttaagcct ggctatcttc gtaagcggtg atttgtccta
    10741 cacgatttgc gtgtcggcca ccttcatacg ctgtttctag ccaaattttg acaatgtctt
    10801 ctgctagccc tgggcctatg actctcgctc caagcgcaag gacatttgta tcattatgtt
    10861 cgcgcgtggc gtgagcgcta aatgtatcgc caacaagcgc gcaacgaatg ccttttactt
    10921 tattagctgc aatactcata ccaatacccg taccacaaac taaaatgccg cggtcaactt
    10981 cttggttaac aactttttca ctaacggtaa tcgctagtcc cggataatcc actgattctg
    11041 gtgcttcggg gccaaattct tcataactaa ttccaacact ttcaagataa gaaataatac
    11101 tttttcgtaa ttcaattccg ccatggtctg aagcaatggc aactttacta actgtcattt
    11161 tttctcctcc tgccgtataa tcaatacctt cattatacat gaattagagt ttttcgacag
    11221 tctttctgtt gcgccaaggt tttgcgtgaa caataataac gtcgcaaggt gcatgagcgg
    11281 ccgtatattc agacacacta ccaagaataa attgctctgt tgctgaaagt ccagttgcgc
    11341 caactaaaat taaatcaggc tcgaaattcc gcgttatttt tttattgaag gtagtttttg
    11401 gcgtaccaaa gtgaacaaaa gtttctacat gcgagacacc agctttttca gcttcttttt
    11461 tgtacatttc aactaattct tctccgtaag ctttggcttt tttggcatag gtttgttcat
    11521 aatcgattaa tggtgcaatc cggcgcacat ccgcgacaaa gccaatacca agcgtagcgc
    11581 catccatttt ggcaaattga acagctcgtc ttagcgcggc ttccgcttca tttgatccat
    11641 ctacaccaac aagaatccgt ttgtaagcag acattttgta tcaccctctc aaaagttttc
    11701 cccttattta cttaataccc ataaataaaa gaaagaagca tgattaaaga gaaaattttg
    11761 tggtactatg aggaaaagga gggctcttta tggcaaagct agaaacgttt tatcccattg
    11821 tagctacacc aaagcgtgca ggctataaag aatatctacc gagtgcggtt cttacaggct
    11881 atattcgctg tttttgggag gcggatgata agaatttccc gggaaataat ttagtggttc
    11941 ctgatttatg tgcggatatt atttttacaa ttgatagtaa aacagggcta gtgacggatg
    12001 ctatatttgt tggcgttagt gatgcaccgt ttgagtctga cgatgaaagt aataccgagc
    12061 tttttgctgt gcgattttat gcgtggtcgt tatttttatt tgtcgaacag gacttgactg
    12121 gtagcatgaa tcgggtaaaa gagccggaag agatgtttgc tggatttgtt tcgttttttc
    12181 aagagaggtt tgctgaaatg acgacgaaca tggaaagaat agctttatta gaagaatttt
    12241 tactgcgaaa attaatgatg cttggcaagc aagtccatcc tgatttttta aacggtattg
    12301 ataagttact acaaaatccc aatcaacttg cgttaggagc tgtatctgtt cggcagttag
    12361 aacggctatt tcaaaaacat atgggacttg caccaaaaca gacagcaaaa cttattcgtt
    12421 tccaaaaagt attacaggca ttatatgaga atccaagtgt gccgggcgct gagcttgctt
    12481 atcttcatgg ttttacggac caggctcact taattaaaca atttaaacga tatagtaatc
    12541 acaccccaga agaaatgaag caaatttttc tgcaaaatgt cgcaaatata caatgaaaaa
    12601 cgtaaatgct ttgttaaact aacgatatgg aggtgcttaa aatgattaat gaatttgttt
    12661 gtacaaatat ttccacgcaa gatccggcgg cgttggttgc gttttatcac gaaaaattgg
    12721 gaattccgat agtattcgaa gggtacgaca attatgacgg agcgaaatta ggtttttctg
    12781 aaaaggctcc cgggattatt gtttggaata atagcaaatg gggcgaagca agcgaatcta
    12841 aagtggagtt tgttttctcg tgtgatacta atttggatga gatgtaccgg gaacttcaaa
    12901 cagcgggagt ggagacacca gaacctcgtg tggctgagtg gggcggacgt gaactgaatt
    12961 tacttgaccc agatggcaat aagattatga ttttggagcc cgcacaatga gcgatgaatt
    13021 tgcttggata cagaaggaaa tcagtggtct taaaggagtc cagtattcgt ttaaagaaga
    13081 atggggagcg gagcgctatc acgttttgga tcagctaatg gcaatgcgcg gaacgaataa
    13141 agaagggcag ccgattttaa ccttgaagtg cgatgccgaa aaaagtgagc aacttcgcgc
    13201 agaaaatcga gccatcgttc ccggttatta catgaataaa cgagtttgga tttctgtttt
    13261 attggaagaa gaacgagata aagacttgat tcgcgcatta attcagcatg cgtactcaga
    13321 agcgaagaat aagttgccaa aatataaaca agcggaactt tttgactaat ttagttaaga
    13381 agttcttatt tctgttataa tgaaattgat tgtgaaaaag aaaacaaaaa ggagatgaaa
    13441 agatggatat taatatgttt atcctatact tcttcattta ttctgttctt ggatgggctt
    13501 gggaggaaat tttttgctcg atttcagaga agaagttagt gtatcgtggt tttctttatg
    13561 gaccatattg tcccatttac gggtttgggg taacgacagt tttaatgatg attttaccgt
    13621 ttcaaaataa cttatgggcc ttatttattt tttcgatgat tatttgtacg gtgattgaat
    13681 atgttaccgc aacgatttta gaagcattat tccatacaac atggtgggat tatcacaatt
    13741 ggccactcaa tgtaaaagga cgaatttgct tgccgatttc gattttttgg ggatttgctt
    13801 gtattatcgt tgtacgcttc ttgcacccac ttgtcaccga atttgcagat tggattttaa
    13861 gctggggtgg ctggattatt cctgcactca tcgtggttct gatgcttatt gatacgatta
    13921 aatctgtcac aagtatgcta tcattccaaa aagcacttgc cgaatttaat gaaaaactaa
    13981 ctgcccaagc aaatgaacta aaagcaagcg taaaagaacg ggcgaaagaa tttgaagaag
    14041 gacttttgaa gaaacaagaa aatgttgata tgaaaattgc tgaaatagaa gcaaaacgta
    14101 agcaagacaa agaacttgct gccagcatgc gcaaacttaa atttaatgaa cgacgaatgt
    14161 taaaatcgtt cccgaaaatg aaagtgaaac gcgcggcgcc atttaagaat ttcaacaaaa
    14221 gtttacttcg ggtcgataaa cagaaaagaa aatagagaaa ctgattatgg cgcgaatggt
    14281 attttttatc atttgcgcct ttttttgcgt tattttttac aaaacgtgta gaaagaacag
    14341 cctatctttt gtatgattaa gaagaaacat cgccccgcaa agctccgtta cttcattctc
    14401 atttttgttt caaagtagat tttacctacc ttcaagaagt ttcataatct cgctatatat
    14461 caagctttac aagcaacttt cacatatttg caaataatag gattgttaaa aaagtcacaa
    14521 gtaaagccca atgatgtaca ttctttccgc aagttattgg gatgaaagcg tgtacatttt
    14581 tattagattt agatttataa ttaaaacgaa caggagggaa cgacatgtat ttggatgaga
    14641 gaagtaattc acttttaaaa gaactcttac gacatcctga cacatcgagt acgaacttac
    14701 aagcaaaatt cggtttaact cgaagacaag tcgactatag tttccaaaaa attaataatt
    14761 ggctagaaga acagacttac ccgaagattc atcgtgccgc aaatggtcga tttatcgtag
    14821 aacctgacct gtttcaaatc attggtgagg aagatggcga aaaaacagat tggtacatcc
    14881 cgtcagaaaa ggaacgcgct agtctaatca tcctcatgtt aacaacagga agtgaagagt
    14941 tatcccttaa tcactttata agcgagctgg aggtgagcaa gaacaccgta ttacgagact
    15001 tgaagctggt acaaaagaca cttgaaaaat tcaaccttga agttaaatat tcgcggatgc
    15061 gtggctattt aattgacgga gacgagtgga atcagcggac ggcactcatt tatgcggcag
    15121 aacacatcat agaaagtttt ggcggcgaag agtatttaca ggatttcatg caagtggacg
    15181 aagcgagaat taaagagctt cgggaaaaat tggaacaagt tgagcatcat ctgaatttgc
    15241 attttattga caataaaatg caaatactgc cttacatttt agaagctgtt tttcggcgga
    15301 tgaagaaggg gcaaacaatt acgacatctt tcctgattga ctacaatgaa ttgtcagata
    15361 ctcgggaata cggagcagca gagattttta ttgaagaaga gccgaatatg ccagaagcag
    15421 agcgaatgta catcacatta caacttttaa cttccaatgt acttccgaaa caatatttga
    15481 aatcggagga aacgcacaag ttaagactgg cgctggaaca agttctaagc gaatttgaga
    15541 aaaaggcttg tattcaacta gtagacaaag aatcgttact tgaaaaatta tttgcacaca
    15601 ttaaacctgc gtattatcga attaagtatc atcttacaac agattacagc attttagaca
    15661 agattgatca agaattccaa gccgtgcatt acatcgtgaa agagtcgtta gcaccattag
    15721 aacgttttat tggtagcaaa gttcctgaaa atgaaagtat atttattacc cttttcattg
    15781 gagggcattt aatcgaatcc acagagaaat tacaaacgag actaaaagca gttgtggttt
    15841 gtccgaacgg attgtcgatt tcgagattga tggaaaaaac attacgaagc ctttttccgg
    15901 aaatattttt ctatcaagcg atgtcgattc gagaatttga acaaacaaag ttaggttatg
    15961 acattgtatt ttccgcagtg ccactttcga ccgacaagaa atttttcctt atcaaccaac
    16021 tgatggatgg gaaagaacgc ctggagctta gacgccgggt gatgcgagcg gtttacttag
    16081 tggatgaggt gaatatcagc gtcgatcaat taatgaaaac tatttccaaa tttgctgata
    16141 ttaaagatgc tgcccgtctt gaaaaagtgc tagcagatta tttaatgcca gttccagaag
    16201 aaaacacatc caaacacgaa ggcaaaagca cactcgcaga tctactcgaa gtaacgcgaa
    16261 tcacacgtaa gaaatcagtg aaagattggc atgaggcaat ttatcatgcg gctttaccgt
    16321 tactttcggc gggagtggtg gaaccagcct acgtggaaga aatgaaacgg caatatccgg
    16381 caccgattat gaacatcatt ctccgtaata caatagctat ccctcatgct gaaacggaaa
    16441 aaggagtaaa tagcctcgga atgagcttgc tttatctaga agaaggcctg ccacttgaag
    16501 gcggtaaaga gctacatttt atcgttgtca ttgcagccat agataaaaac gctcacttca
    16561 cagctttact acaattgatg gaattatcgg agaacaaaaa agaactgaaa aaacttgcgg
    16621 atgctgcgaa cacagaagaa atgcaccaaa taattaaaaa cttcacggac ttggaaacaa
    16681 aaaagacaat gtagagaagt cagaaagaat tacaggagga tttcgtaatg gatttagtac
    16741 aatttttgaa aaaaggaatg gtttgggttc aatcggatat cgagaaacaa gaggacctat
    16801 tccaaatggt cgcagaaagt ggaaagtctg aaggatatgt aacggatgac tttttaacaa
    16861 gactaacaga ccgtgaacaa acctttccaa cggggctaaa attagatgga tacggcgtgg
    16921 cattaccgca cacggatcca gaatgcgtta cggaacaatt tatcgccgta atcactgtga
    16981 aagatggcat tccatttaaa ttaatggaag atgctggtca aacggttgaa gcgaatttga
    17041 ttttcgtact cggactaaat gaacctcaca gccagctcgc ggtacttcag caattgatgg
    17101 ggacgattca ggataaagac aatgtagccg cattactcag agcgaaagat gaagacgaag
    17161 taaaacaaat tttagaaact attaccgttt aaaaaaaaca ggaaaattag ccgcgggaaa
    17221 tcgcagcaat taattaggag gaatttatca tgggacaatt taaaattttg gtagcttgtg
    17281 gagcaggaat tgcaacatca acagtagtaa cggacagagt agaacgtttg gtaaaagaaa
    17341 acaacgtgga cgcagaagta aaacaaatta aaatttcaga agcagcatct atgcaagacg
    17401 gagcggattt aatcgtatca acaactattt taccaacaac ttacaaaatc ccagcgatta
    17461 ttgcaacttc ttacatcact ggcatgggta tggaagaatt agacgaagaa atacttgcgc
    17521 accttaaata aaggctgcgc aagggagttt agaaatcatc attaaacaga gaaaaaagga
    17581 ggaaatatta aatggataca cttctgtcag gagtacagta tgttttaaac ttggggccta
    17641 cagttatttt gcctattatg attttcttta ttgcattaat tttccgagta ccagcaaaga
    17701 aagcgcttcg ttcagcgatt acgattggta tcgggtttgt aggtattaac cttgttatta
    17761 gtttactatc tagtaactta ggtccggcag cgcaacaaat ggttgagcgt tttggactga
    17821 atttaacaat tattgatgca ggttggccag cagcagccgc ggcttcatgg gcttctccag
    17881 ttgcagcaat tttaattcca atctgtttgg tagttaactt agcacttatt ttcttcaaag
    17941 ttacgaaaac actcgatatt gatatttgga actactggca cttcatcgca gcaggtgcaa
    18001 ctggttatat cgtaactggt ggtaactggt ggttcgcgat tctttgtgcg atcatctatg
    18061 aagttgctgt tctttggatg gcagacagaa cacaacctat ggtagaagaa ttttacggat
    18121 taaaagggat ctccttacca acaggttcta cagcagcatt cggtttcatc ggtattccgg
    18181 ttggttggct aatcgctaaa atccctggta ttaaaaacat ccatgttgac ccagaaacta
    18241 ttcaaaaacg ttttggtatt ttcggggaac caatgatgat gggtcttatt ctaggtattg
    18301 caatcggtat tcttgcaggc tatgacgttg gcgcagttgc acaacttggt atgtccatgg
    18361 gtgcggtaat gttcttaatg cctcgtatgg ttaaaatttt aatggaaggt ttaattccaa
    18421 tttcagaatc cgctcgtgaa ttcatgaaat ctcgtttcaa aggccgcgaa ctttatatcg
    18481 ggcttgatgc agcactttca atcggtcacc cagcgaatat ttctactggt ttaatccttg
    18541 ttccaatcac tcttttctta gctgttatca ttcctggtaa caaagtactt ccttttggtg
    18601 acttggcaac tattccattc tacgtatcat tcgtagtagc atctcgtaaa ggtaacattc
    18661 ttcactctgt tttagctgga actgtagtta ttgcactagc gcttcttatg gcaactgact
    18721 tcggtcttgt tcatacagaa atgatgaaag gtgtttacga attccctaaa ggagcaacac
    18781 aagttagtac acttgatatg ggtggtaact tctttaactg ggttattctt aaattctctc
    18841 aagcttgggc agctattttc taagttttgt cttaatgata tagaagaggt gatagtaaca
    18901 tgagagcagc tgtgttatac gagaataatg taataaaagc agaacaaatt gatgaagcga
    18961 cttgtgggaa agatcaagtt cgtgtcgaag taaaagcagt cggaatatgc ggatcagata
    19021 ttcataaaat gcagactcgc tggaaatacc cactgcctgc tgtaatggga catgaattcg
    19081 caggtgtagt tacggaaatt ggtagcgaag taacaaacgt agctattggt gaccgtgttg
    19141 cagggattcc gctcgagcct tgtatggaat gtaattattg taaagcgggc gactttgcat
    19201 tatgtgacaa ctaccggatg gtgggatcac attttcacgg cggatttgct gaaaatgtcg
    19261 tcatgaaagc cgacaatgtc atttctatcg gcgaccttga ttttgaagaa ggtgcgatga
    19321 ttgaaccact tgctgtatca atgcacggag tacttggtat tcagccgaga cttggcgata
    19381 cggtgattgt cttcggaatt ggaaccatcg gaatcttggt tgtacaatgc ttacttcttg
    19441 cgggagtaaa agatattatc gcggttgata tcagtgataa aaagttagca gacgcgcggg
    19501 aattcggttg caaatacact attaatccaa aaaacgaaga cttaaaagaa cgcgtttttg
    19561 cttatacaaa tggtcttggg gcagatatag cgctcgagtg tgctggttcc aaaataacgc
    19621 aagaacaatg tcttcttgta acaaagaaaa aaggtaaagt tggttttcta ggaatagctt
    19681 acgcagatgt gcttttacac gaggaagctt ttgaaaatat ttttagacgt gaacttacgc
    19741 tgaaaggttt ttggaattct tactcggcac catttcctgg tgaggaatgg cgtacgtcga
    19801 ttgaattcgt gaaacaaggt cgaattaaac tgaaaccact aatttcgcat cgttataagc
    19861 tagaagaaac gaaagaagcg tttgatatga ttctttccag agagcatgat tataacaaag
    19921 tgatgatatt gccgcagaaa ggtgacgatt aatttgaaag cagtagtaaa aacaaacccc
    19981 ggatatgatc aaatggagct aagagatgta gaagaaccac aagtctatgg cgacaaagta
    20041 aaaatcaaag tagcattcac tggtatttgc ggatcagaca tccatacgtt taaaggtgaa
    20101 tacaaaaatc caacaactcc cgtcacactg ggacatgaat tttctggtgt cgttgtagaa
    20161 gttgggccag atgtaacaag tatcaaagtg ggagaccgtg tcacaagtga aacaactttt
    20221 gaaacttgtg gagaatgtat ttattgtaag gaacgtgatt acaatttatg tagcaatcgt
    20281 cgcggcattg gtacgcaagc aaatggtagt tttgcagaat ttgttttatc tcgcgaagaa
    20341 agttgtcacg tgcttgatga acgtatttcg ctcgaagcag cagcactaac agaaccgctt
    20401 gcatgttgtg tgcattcggc gcttgaaaaa acaacgattc gtccagatga cacagtactt
    20461 gttttcggac caggtccaat tggtttgtta ctagctcaag ttgtgaaagc gcaaggggca
    20521 acggtgatta tggcaggaat taccaaagat agtgaccgct tacgtctagc aaaagagctt
    20581 ggaatggacc ggattgtcga tactttaaaa gaagacttgg ctgaagttgt gcttggcatg
    20641 acagatggtt acggagcgga acgcgtattt gattgttctg gcgcagtacc cgctgtaaat
    20701 caaggattac ctctaacgaa gaaaaaaggc gattttgttc aagtaggact ttttgccgaa
    20761 aagaaaaatg cgattgatga agaatccatt atccaacgtg aaattgctta tatcggcagc
    20821 cgttcgcaaa aaccatcttc ttggatttta gcgctcgact tactggcaaa tggcaaaatc
    20881 aatacggata aaatgattac taaagtatac ggtttggatg actggcgcga ggctttcgag
    20941 gcagttatgg caggaaatga aattaaagta ttagtgaaat cttaataatg gaggatgggc
    21001 tgtatgaaaa aacatcaaaa aaaggataac cgtgcaaacg aatccaaagc ttctcgggct
    21061 cagatgtttt acagtagtca tccttagaaa tgagccgaga acatattcgc gtatgttctc
    21121 ggttccattt cattataaga cgttaaaaga aaaaaatcta ttaatgaagg tgaaattaaa
    21181 tgaaattaac aattggttgc gaccacggcg gacgtagact aaaagatgcc attgtgaaac
    21241 atttacgtga aaaagatatt gaagttgttg atattggaac atatacagat gaaagtgtcg
    21301 attttccatc ttatgcagaa gaagttgcca atcaagtagt aagcgggcaa tctgaactcg
    21361 gtattttgtg ctgtggaact ggaataggta tgagtattgc tgctaacaaa gtggacggaa
    21421 tccgtgctgc ggttgtttcg gatactttct cagcgcgtgc cacccgcgaa cataacaata
    21481 gcaatgttct ctgtctaggc gaacgtgtta tcggtgaagg attagcgctt ttaattgttg
    21541 atacttggct tgaggcatca tttgcaggag atcgccataa acgccgattg gataaaatta
    21601 ctgaactcga aagaaagtga ggatgaacat gaggaaaata gccgcttcaa ttatgtgtgc
    21661 agaccaacta catttaggtg aagagctccg tcgccttgaa tctgctggtg tggaactact
    21721 acactgcgat gtgatggacg gtgtatatgt gaataatctt gcgctcggtc cagaatattt
    21781 ggaaatagtg cgaaacaata cagaaatccc tctagacata catttggcta cgattacccc
    21841 acttaaatat attgacatgt ttggtcctgt gaaaccggaa tatatttctt ttcatgtaga
    21901 agtagcggaa gacgtgtcag aagtcatccg gaaaatccgc tcttacaacg ttaaaccatc
    21961 gattgcgata aatccagaaa cacctatcga agccatttat ccttatttag atgatgtcga
    22021 aatggtgtta atgatgactg taaacccggg ttttgcggga caaaaatttc aaacagatgt
    22081 attacaaaag ctacatgatt taaaagcaaa actagctgga aaagtccatg cgccgctcat
    22141 tgaagtggat ggcaatatta ataaagaaac agtaggctta atgcgagatt gcttaccaga
    22201 catttatgta ctaggcacat ccgcgttatt tcatgaccga gataaaacga gttatgcaga
    22261 aagactagta cacatttggt cagatgtaga aaaacatgtg taataaagca caaacaattt
    22321 aagggagatg acagttttga aaaaaacatt agatagacaa gccgtggaca cgattcgttc
    22381 gttatccatt gatatgattg agaaagcaaa ttcaggacac ccaggaatgc cgatgggagc
    22441 agctccaatg gcgtatatgc tatttgcgaa acatttagta ttcaacccag ccaacccaga
    22501 atggtttaac cgcgatcgct ttgttttatc agcaggacac gggtctgcgc tactttatag
    22561 catgcttcat ttatttggtt atgatgtaaa aatggaagac ttaaaacagt tccgtcaatt
    22621 agatagtttg acaccaggac accctgaatt tggatggact gctggagtcg atgcaacgag
    22681 tggcccgctt ggacaaggga ttggtatggc ggctggaatg gcgcttgcag agtctcattt
    22741 agcggcggag tataaccaac caaattatcc aattgtcgac cattatacgt atgcgatttg
    22801 tggtgacgga gacttgatgg aaggcgtggc atcagaaaca gcctcacttg caggacattt
    22861 aggacttggg aaattaatcg tattgtacga ttccaatgat atttgtttag atggagattt
    22921 aagcgcaacg ttcagtgaaa atgcagcaga ccgtttccgc gcatacggct ggcaagtttt
    22981 acgtgtagaa gatggcaaca atttagcggc aattcaagaa aaaattgttc aagcaaaatt
    23041 agaaacatcg aaaccaacgc taatcgaagt gaaaacagtc atcggttacg gcgcgccaac
    23101 aaaagcaggc agctccgcaa gtcacggtgc tccgctcggt gaaaaagaag caaatggtgc
    23161 aaaagagcat tacgaatggg cagaagagcc tttcacagta ccagccgaag ttcgtgatta
    23221 cttaagaaat tacaaagctc gcggggaaaa actagagggt gcttggaaca caatgctcgc
    23281 taattacaaa aaagaattcc cagaacttgc aagtcaatta gaccgcgtgt tagcgggaga
    23341 agtagctgcc gattggaacg ctaatttgcc aacttttgaa gcaggcacaa atgttgcaac
    23401 gcgctctgct tctgggaaaa tgattaacgc aattgcagcc gaattaccgg aacttttcgg
    23461 gggatccgct gacttaggtt gctcgaacaa aacatttatt gatgcgagcc cagcatacag
    23521 cattcaagac ccagctggta aaaatatctg gttcggtgtg cgcgaatttg cgatgggagc
    23581 aatgttaaac ggaatggcac ttcatagcgg tttgcgagtg tttggctcga ctttcttcgt
    23641 cttctcagac tatgtccgcc cagcaatgcg gatggctgct ttaatgcaac ttccagtaac
    23701 gtatgtattc acgcatgaca gtatcgctgt aggtgaagac ggcccgacac atgaaccaat
    23761 cgaacaacta gcctcgcttc gtgctatgcc aggcctaaca gttattcgcc cagccgatgc
    23821 caaagaaacc cgcgctgctt gggaaattgc cgcaactaac acaaatggtc caatcgcact
    23881 tgtattatca cgccaagact taccagtgct tgaaaatgca caagaagaag tggatgcagg
    23941 tgtagataaa ggtgcttata tcgtagcacc agcaaatagt tccaaaccag acgctatcat
    24001 tatcgcaaca ggatcagaag tgtcccttgc aattgaagcg aaagccgaac ttgcgaaaaa
    24061 agatatcgac gtttccgttg ttagtttatc cagctgggaa cgctttgaaa aaacaaccga
    24121 tgcttataaa gaaagcattt taccaaaaga agtcacagcg agatttgcga ttgaagcagg
    24181 agcaacattc ggttggaaag aatttattgg gtcagaaggc gatatgttag gaatcgatca
    24241 cttcggcgca tctgcccctg cgaaagattt gtttaacgct tatggattta caccagaaaa
    24301 tgtggcggat cgtgtcgaaa ctgtgattgc gaaagccggt gtgcgcgtat gacattcgta
    24361 gcgccatcgt tactcgcagc tgattatatg aacatggcaa actccattaa agaagcagaa
    24421 catgccggag ctgactacct tcatatcgat gtcatggacg gacattttgt gccgaatctg
    24481 acgtttggaa ttgatatggt cgagcaaatc aagaaaacag cgactattcc actggatgtc
    24541 cacttaatgc tctcgaaccc agaaaactat attgaaaaat ttgcagcagc tggggcgcac
    24601 attatttccg tgcatatcga agcggcgccg cacatccacc gcgtcattca acaaattaag
    24661 gcagcgggct gtaaagcggg agtcgtgctt aatccaggaa caccggcgag cgtgctggat
    24721 gccgttttag cagatgtaga tttagtttta caaatgaccg taaatccagg gtttggtgga
    24781 caagctttca ttgattctac catcaaaaac atgcgctatc tggatcattg gcgccgagaa
    24841 aataacggca gctatgtgat cgaagtcgac ggtggtgtaa atgccgaaac cgcagaaaaa
    24901 tgtaagcaag cgggcgtaga cgttcttgta gcaggctctt acttctttag agcagatgat
    24961 aaaattgctt gtattaaaga attaaaagcg taacaaaaaa agtgctacaa accaactagc
    25021 ggtttgtagc acttttttat ggagtggttt aacttctttt aaagaaaaag aagctagtag
    25081 ataacaacgt caataaactt cctagtgcaa aaaagagagc atcttttgaa tcaccagtag
    25141 ttgggaggat attagaggtg tttttatcaa ctttttttgt tgcttcggat gaaatcacag
    25201 tatcattagt actcagtgta gtattgtcgg tcatttctcc attggtattt gtattatcac
    25261 tgtttgctat tttttcataa atataggtaa cagttgcagg ggttgtgcta aaagtacccg
    25321 attcatttcc ttccactttt tgaagtttat agcctgctat gtctttgctt ttagtttggt
    25381 aggtattaat tacttcaccg gttaaaacag tatcttttgc tagtgtttta cccgattcat
    25441 cttgatattt tacagtgact gtcccatttt ggacagcagt tttttcataa atatacgtta
    25501 cattttgcag tgtttcagaa aattgtcctg tcgcatttcc gggtgtttct tttaaagtat
    25561 agccatctat tattttagga gtagtgacgt aattttcacc aatactacca tctaatctag
    25621 tagaagtagc taattcattc ccagacgcat ctttatagga aactaggact ggtttagtat
    25681 acttgaagta gataaatggc tttccagaag gaccatattc agaaatatca tagtaagaat
    25741 caaatcgatt tgtcccagtg aaaagtgaaa aagtagattc gagtggctct gctgaaaagt
    25801 ttaatgcttt ttcggcttga ttatacgtaa taccattcgc taaatcagtt atgaataaat
    25861 tatctgtagt caaatgagcc gaagcatctt gaaactgaat gtaattttct ataggtagga
    25921 tgtggttgct cggtacaatg agtgtactta aaactgtttg agcggcaaaa gcttgataag
    25981 ccatttgaag atttgggttt tgaattgtaa tattagtaat aaaattattt tcaaaggcag
    26041 aagcatcaat actttcaaca gtggctggtg tagtcactgt ttttaaatta ttcgctaaaa
    26101 atgcttggga aggaatattt tttaaagcag tagaataagt tattttttct aatttatt
//
LOCUS       DASDXX010000017        25934 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.017, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000017 DASDXX010000000
VERSION     DASDXX010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 25934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25934
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.017"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..902
                     /locus_tag="U0280_000588"
     CDS             <1..902
                     /locus_tag="U0280_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2270547.1"
                     /translation="IGDTLKFIRKSKNLTQQETCTNALSRSNYQKIENNKIMPSMDRF
                     IQILLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDMILNVISKCDDYLEN
                     HTDIFISDIKASLEGILLAEKEHNFELAREKVTYIWDRLSEADELFWNDILILRNIFF
                     IFENETAQHIVNRLISQLKKYRYLYPTLSIEISLHVNRATYLILDEEYELALHYIELS
                     IKIAKHNHYYLQFCMAIAKKGIVLYKLGQKQKGKHFMQRALRVAKVLEEERILNGIKN
                     EIDYFLHDELQNLSLNEFTKIDI"
     gene            complement(958..1422)
                     /gene="smpB"
                     /locus_tag="U0280_000589"
     CDS             complement(958..1422)
                     /gene="smpB"
                     /locus_tag="U0280_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEM2270548.1"
                     /translation="MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARV
                     NLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESG
                     YSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ"
     gene            complement(1438..3819)
                     /gene="rnr"
                     /locus_tag="U0280_000590"
     CDS             complement(1438..3819)
                     /gene="rnr"
                     /locus_tag="U0280_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEM2270549.1"
                     /translation="MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVK
                     ALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNE
                     VKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKR
                     LFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIH
                     KHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQ
                     LPNGNWKLGVHIADVTHYVTEGSPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLN
                     PQVDRFTMSCEMEIDEEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAP
                     IVPMLEKMQDLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIE
                     EFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPA
                     ALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPD
                     LIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFM
                     VDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQ
                     IYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSNQK
                     KGRNKRRAGKSEDVKPKSERKEDEWHTKPKKKKKKKPFYQGVAKESPKKKKRR"
     gene            complement(3853..4599)
                     /locus_tag="U0280_000591"
     CDS             complement(3853..4599)
                     /locus_tag="U0280_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HEM2270550.1"
                     /translation="MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYT
                     CYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKL
                     GFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTPEQIDAEMVAYKDAPM
                     NTIAKLKDEINGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFK
                     ESGHVITLDKERKEVNQAILTFLDSLDWQE"
     gene            complement(4855..5088)
                     /gene="secG"
                     /locus_tag="U0280_000592"
     CDS             complement(4855..5088)
                     /gene="secG"
                     /locus_tag="U0280_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEM2270551.1"
                     /translation="MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGK
                     QKARGLELILHRTTIVLSVVFFAILIALAYFVQ"
     gene            complement(5178..5921)
                     /locus_tag="U0280_000593"
     CDS             complement(5178..5921)
                     /locus_tag="U0280_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HEM2270552.1"
                     /translation="MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVH
                     APNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYNEIAIVGVAMGGVFALKMAE
                     SFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEA
                     RATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHD
                     IVNDCEKDILEEDLIYFLDDLVWLEEKVV"
     gene            complement(6104..6823)
                     /locus_tag="U0280_000594"
     CDS             complement(6104..6823)
                     /locus_tag="U0280_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2270553.1"
                     /translation="MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTN
                     HQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMG
                     KLQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTI
                     YHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQK
                     PKQLLQLIHSFFSNLSAEIHK"
     gene            complement(6956..7129)
                     /locus_tag="U0280_000595"
     CDS             complement(6956..7129)
                     /locus_tag="U0280_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270554.1"
                     /translation="MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINA
                     DMPQQQFHRRLMK"
     gene            complement(7232..8524)
                     /gene="eno"
                     /locus_tag="U0280_000596"
     CDS             complement(7232..8524)
                     /gene="eno"
                     /locus_tag="U0280_000596"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEM2270555.1"
                     /translation="MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTG
                     EYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPN
                     KGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNV
                     DVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEA
                     LETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEE
                     MITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIAN
                     SILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTG
                     APTRTDRVAKYNQLLRIEDNLADLAEYHGNETFYNLKK"
     gene            complement(8660..10192)
                     /locus_tag="U0280_000597"
     CDS             complement(8660..10192)
                     /locus_tag="U0280_000597"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEM2270556.1"
                     /translation="MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE
                     LKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFT
                     HTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSS
                     LEYLETLQKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVNAEGEKFEDPIE
                     LVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEW
                     DHFDRGANHPKNIKFVTMTLYNPSIDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETE
                     KYPHVTFFMNGGRNEEFPGENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHD
                     AIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETM
                     STPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLI
                     QK"
     gene            complement(10194..12185)
                     /locus_tag="U0280_000598"
                     /pseudo
     CDS             complement(10194..12185)
                     /locus_tag="U0280_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004081072.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
     gene            complement(12320..13330)
                     /gene="gap"
                     /locus_tag="U0280_000599"
     CDS             complement(12320..13330)
                     /gene="gap"
                     /locus_tag="U0280_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEM2270557.1"
                     /translation="MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHL
                     LKYDTTQGRFDGEVEVHDGFFNVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTA
                     QDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMA
                     KVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIG
                     EVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSD
                     QVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKI
                     AK"
     gene            complement(13363..14409)
                     /locus_tag="U0280_000600"
     CDS             complement(13363..14409)
                     /locus_tag="U0280_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM2270558.1"
                     /translation="MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGML
                     GMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLENVMNQLSGLHSMEEQLA
                     KKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEM
                     MTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYR
                     SLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYY
                     FDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEG
                     AAKSLLKGSNTLLK"
     gene            complement(14850..16193)
                     /locus_tag="U0280_000601"
     CDS             complement(14850..16193)
                     /locus_tag="U0280_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEM2270559.1"
                     /translation="MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLE
                     DKALENPLIEVIPGSDFATDFSYSSRKSAGSSDDTDWLEQIADNKLTLADALKEQLHL
                     MDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVG
                     ARDARECILLQIERSPDAPYIAYDVIQKFFTEFAEKKWKKIAAEMDVSLQDIQEVSDY
                     IQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRAT
                     EEKDVAQFLREKAGEFDWIKKGIEQRENTLQRVGEAIVNHQKAYFLDNSAHLQPLTLK
                     EVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLQKKSSENENTGDISSTTIK
                     KLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF"
     gene            complement(16353..17279)
                     /locus_tag="U0280_000602"
     CDS             complement(16353..17279)
                     /locus_tag="U0280_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEM2270560.1"
                     /translation="MRVIDTHCDALYKLQAGKGKYTFQDAEELDVNFERLIEAKMLLQ
                     GFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLPEDKIGAML
                     TLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHL
                     LNERKVFTDVSHLSVKAFWETLEQAEFVIASHSNAKAICSHPRNLDDEQIKAMIEHDA
                     MIHVVFYPLFTTNNGVADTEDVIRHIDHICELGGLKNIGFGSDFDGIPDHVKGLEHVG
                     KYQSFLETLEKHYTKEEIEGFASRNFLNHLPK"
     gene            complement(17358..19520)
                     /locus_tag="U0280_000603"
     CDS             complement(17358..19520)
                     /locus_tag="U0280_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEM2270561.1"
                     /translation="MKDGFLSKIASGVGGKKGRFITLGIWIIAIIILQFFFPKAADYK
                     DDAAKDLPNSEPSVVAQKLIDDKFAGTDGVPALITWYRSTGLTTEDLVNIQKYSKELT
                     ENPVDYQKMAVPYDKMPPVALKQQVSKDGTTFIQTVIMKDSATSDQLTESFKQLESAA
                     KTTIGENPFAQKVSADDALVARTTGPAGISVDASGLFKDADVSLLIGTVLLVLVFLLV
                     IYRSPILALIPLIAVGFAYLVITPILGLLAKEGIITYGSQGLSIMTVLLFGAGTDYCL
                     FLISRFRSHLHTEKNRFQAFKEAFSGTAGAIALSGLTVMAALLLLLAAEYGSFHNFAV
                     PFSLAIFIMMISSLTLVPALLGIFGRVSFWPFVPRTLEMEETRAKKKGKTPKHHKENR
                     FWHKIGEMSAKHPVRILIITLIILIGCGIFTTQVKYTYDTLSTFPEDMPSREGFTLIS
                     DHFGAGMLAPMEVVVNSKESMKSSLENVDGVASVTGPERSKGYQKYTLILKDNPYSNE
                     AMDVVPKVRAAADKGNDVYIAGQTATQYDDRAVTEHDEKVIIPLVIALIAILLLCYLR
                     SITAMLYLVATVLLSFVGALGLGWVIIHYAMGVEAISGLIPLYAFVFIVALGEDYNIF
                     MISSIWKNSKKMPLRKAITEGVGQTGGVITSAGLILAGTFGVLTTLPIQLLVQFGLIT
                     AIGVLLDTFIVRPFLVPSITVLLGKWAFWPGKQHKMTK"
     gene            complement(19600..20208)
                     /locus_tag="U0280_000604"
     CDS             complement(19600..20208)
                     /locus_tag="U0280_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2270562.1"
                     /translation="MEKKRTRAEELGITRRKILNTARDLFMEKGYRAVSTREIAKIAN
                     ITQPALYHHFEDKESLYIEVVRELTQNIQVEMHPIMQVTKAKEEQLHDMLIMLIEEHP
                     TNILLMIHDILNEMKPENQFLLYKLWQKTYLEPFQLFFERLENAGELRDGVSAETAAR
                     YCLSTISPLFSGKGSFAQKQTTTEQIDELINLMMFGICKKEV"
     gene            complement(20225..20623)
                     /locus_tag="U0280_000605"
     CDS             complement(20225..20623)
                     /locus_tag="U0280_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270563.1"
                     /translation="MAASLKDRLEKEVRTYSADNNLTVQTIDFLYAGPHMRGRHSLIL
                     AFTEAGIFTFVFKLSDAEMHFLDGETVQQIALEKKKLVYRLYIRAVTEEGELEEGKYL
                     VSKRVLGRKWHKETLEKLINKNLPLLTATK"
     gene            20856..21191
                     /locus_tag="U0280_000606"
     CDS             20856..21191
                     /locus_tag="U0280_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270564.1"
                     /translation="MGELGNIETRNGRTSFFDGGLLQYIGWTILGTLVTICTIGICYP
                     WALCMVYGWKINHTVIEGRRLKFQGSAVGLFGHWIKWLFLTIITIGIYGFWVFIKLED
                     WKVKNTIFK"
     gene            complement(21248..21319)
                     /locus_tag="U0280_000607"
     tRNA            complement(21248..21319)
                     /locus_tag="U0280_000607"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21284..21286),aa:Arg,seq:ccg)
     gene            complement(21439..22875)
                     /locus_tag="U0280_000608"
     CDS             complement(21439..22875)
                     /locus_tag="U0280_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic polysaccharide monooxygenase"
                     /protein_id="HEM2270565.1"
                     /translation="MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKG
                     INVGVGSAQYEPQSVEAPKGFPASGPADGSIAGGGKYSLLDAQTANRWAKVDIQSGPL
                     TVEWTLTAPHRTSSWQYFITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINI
                     PDDRSGYYVILGVWNIADTGNAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAK
                     NVSLTWTVSTDNVGIKGYEILRDGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGN
                     KSTLSDSIDVTTKEAPAVDNEAPTAPKSLMSHGQTETTIALCWQASTDNVEVKNYEIY
                     RNNTKIATSTKTMFEDTKLASNKSYNYKVYAVDTSGNRSLVSNEITIKTKPLDPLNTW
                     KSDQIYHAGDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASRDIQIWNAQKAYNGGDKV
                     TYNGKTYQAKWWVRGEKPDSSSIWTLLN"
     gene            23032..23628
                     /gene="clpP"
                     /locus_tag="U0280_000609"
     CDS             23032..23628
                     /gene="clpP"
                     /locus_tag="U0280_000609"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEM2270566.1"
                     /translation="MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSI
                     VSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSF
                     LLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQ
                     PYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG"
     gene            complement(23677..25068)
                     /locus_tag="U0280_000610"
     CDS             complement(23677..25068)
                     /locus_tag="U0280_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2270567.1"
                     /translation="MTKVNSFFRKKSFHNPATDKHHLNKTLGAFDLTMLGVGAVVGGG
                     IFILPGQVASVIAGPGIIISFIIAGIACCLAALCYSEFASKLPVAGSAYTYSYHVFGE
                     GVAWILGWSLILEYGLAVAAIASGWSSYMKSLLAGFDLHIPTVISSAYDPSAGTYFDL
                     LAFVVVMVIGILLSFGIRESTRVNNIMVLVKIAVVVLFILVGAFYVKPDNWTPFLPFG
                     VQGVITGASTVFFAYIGFDAVSSAAEEVKNPQKNMPIGIISSLAICTLLYILLSAVLT
                     GVVPYTDLVDVSAPVAFALQAINQNWIAGLLSVGAIVGMTTVVLVMSYGGTRLLFAMG
                     RDGLLPKSFSKISKNDTPVRNTMIFATVMGLIASTVPMADLAQLINIGTLFAFAMVSI
                     GIFFLRRNPDLNQKGFRTPFYPVVPALSFLLCVYLMINLSKTTWIAFGIWFVIGILVY
                     TFYGRKHSALRVK"
     gene            25285..>25934
                     /gene="inlP"
                     /locus_tag="U0280_000611"
     CDS             25285..>25934
                     /gene="inlP"
                     /locus_tag="U0280_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 3 internalin InlP"
                     /protein_id="HEM2270568.1"
                     /translation="MRKVFMFLSTALLLAILSLSFTGLDLKAKAASDLYPLPAPIIDV
                     FPDDGLAKDMARNLNKDSVNDVIDQDDLDALTSLGFETHTITNDSMQLLERAMFNNVT
                     DVSIMEFGAKLTEFPDITTIPHLKTLFFADSPGRLTRNLSLPNYQNYPEMDTITMSGN
                     NLVGSIPDFTGMPALKQLYMSDMSITSDELPNFNNIPLLITLDLSSNQLTTIPDFQ"
BASE COUNT         7333 a         5420 c         4559 g         8622 t
ORIGIN      
        1 atattggaga cacattaaaa tttattcgga aaagtaaaaa cttaacacaa caagagactt
       61 gtacgaatgc cctcagtcgt tctaactatc aaaaaatcga aaataataaa atcatgccta
      121 gtatggatcg ttttatccaa atcttactta atttcaatat gacgttagaa gaatttgaat
      181 ttgtaaaacg ggactttaca ccttctccaa aagaaaatat cctttatcta tactccaaga
      241 ttattacctc ctccgaaaca gatatgatac ttaatgttat ttccaaatgc gatgattact
      301 tagaaaacca caccgatatt tttatttctg atattaaagc ctcacttgaa ggtattttac
      361 ttgctgaaaa agaacataat tttgaacttg ctcgagaaaa agtaacctac atttgggaca
      421 gactttcgga agcggatgaa ttattttgga atgacatatt aattttaaga aatattttct
      481 ttatttttga aaatgaaacc gctcaacata ttgtaaatcg ccttatctct caacttaaaa
      541 aatatcgtta cctatatcca accctttcga ttgagatttc acttcatgtt aatcgtgcta
      601 cttatttaat tttagacgaa gaatatgaac tagctttgca ctacattgaa ttatctataa
      661 aaatcgctaa gcataaccat tactacttac aattctgtat ggctattgcg aaaaaaggaa
      721 ttgtgctgta taagctcggc caaaaacaaa aaggtaaaca ctttatgcaa cgagcactta
      781 gagtggctaa agtgcttgaa gaagagcgta ttctaaatgg tatcaaaaat gaaatagatt
      841 attttcttca cgatgaactt caaaatctct ctttaaacga attcaccaaa atcgacatat
      901 aaaaaaagcc taaatctagc ttctccaact tttggttgaa tgactagatt taggctttta
      961 ttgttggcgc tctttaaaag cgcgttcgat atcacgtttt gcttcttttt gttttaagtc
     1021 ttggcgttta tcgtatttct ttttacctcg agctacaccg atgagtactt ttgcgtagcc
     1081 atctttaata tacattttta gcggaacaat cgaataaccg gactctttcg tttctccaat
     1141 taaacggctg atttgcttct tatgtaaaag caatttgcgc gttcttagtg gatcatgatt
     1201 gtagcggttc ccttgttcat aaggactaat atgcatattg tgtaagaaaa tttccccttt
     1261 gtcgatacgt gcataggaat cttttaagtt tacccgtgcg tttcttacgg atttaatttc
     1321 agtaccttgc aggacaatgc cagcctcaaa agtttcttca attgcgtaat cgtggcgcgc
     1381 ttttttattt tgcgcaacta gcttaccatc accttttggc ataactcccc atcctttcta
     1441 gcgacgtttt ttcttcttcg ggctttcttt tgctacacct tgataaaaag gttttttctt
     1501 ctttttcttt ttaggttttg tatgccattc gtcttcttta cgttctgatt ttggtttcac
     1561 gtcttctgat ttaccagctc tacgtttgtt acgacctttt ttctggttac tcttgaaatt
     1621 tcttgtttta tcaatcggtt tttcgcgttg gcgtttttgt ttatcgctca ctggacctgg
     1681 tttaccttca ctacgaagcg caaaatcgat ttcacgagca tccacgtcta ctttagttac
     1741 ttcgacttcc acttcatcac caatacgata aatttggcct gtcctttcgc caatcatcgc
     1801 taattgattt tggtggaatt tgaagtagtc gcctttcatt gcgctcacat gaactaaacc
     1861 ttcaatcgta gttggaagtt cgataaataa gccaaaattg gttaccgaac taatgattcc
     1921 gatgaaacgt tcgcccactt tgtcgaccat aaattccgtt ttcttcagtt cgtctgtttc
     1981 gcgctctgct tcaacggcac ggcgctccat tttcgagctg tgttcagcaa tctcaggaag
     2041 ctcctcagcg cgtttttcta acgtttccgg acgaacatcc ccgttaatta aatactctct
     2101 aatcaacctg tgaacaatca aatccgggta ccgacgaatt ggtgacgtga aatgtgtata
     2161 aaaatcagta gacaaaccaa agtgtccggc gcttactgtg tcatacttcg cttgttgcat
     2221 cgaacgcagc ataacagtcg aaacaaccat ctcttccggt ttacctttta cttcttctag
     2281 tacttgttgt aaagcagctg ggtgaatatc gttagcagtc cccttcacaa tcaaaccaaa
     2341 gttcgtaata aattcaaaga accgcgctaa tttatcttct tttggatctt catggatacg
     2401 gtaaataaat ggtacatcca tccagtggaa atgctctgca actgtttcat tggcagcaag
     2461 cataaattct tcaatcaaat gctctcccgc tgaacgttcg cgcataacga ctgcttctgg
     2521 atgaccgtct tcatcaacaa ctacacgtgc ttctttaaag tcaaaatcaa tcgcgccacg
     2581 tttttcacgt ttacgacgaa gtatttcggc caaatcttgc atcttttcaa gcattggaac
     2641 aattggcgca tatttttccc gtaaagcttc gtccttttca actaaaatat catttacatc
     2701 cgtatacgtc atacgttctg ttgttttaat aatactttca aaaatttcgt gattaaccac
     2761 atgaccttct tcatcgattt ccatttcaca actcatagta aaacgatcta cttgtgggtt
     2821 aagcgagcaa attccgttcg atagtttatg tggcaacatc ggaattacgc ggtcaaccaa
     2881 ataaacactc gttccacgtt cttgcgcttc gacatcaagc ggcgagcctt ctgtcacata
     2941 atgcgttaca tccgcaatat gaacgcctag cttccagttg ccattcggta gttgcttaac
     3001 agtaacagca tcatctaaat ccttagcgtc tgccccgtca attgtaataa tcatttggtc
     3061 acgaagatca cgacggttac caatatccga atcatccacc acatccggcg ctttacttac
     3121 ctgctccatt acttcttccg ggaacccgat tgaaataccg tgtttatgaa taatcgataa
     3181 aatatccact cctggatcat tacggtgacc gatgattgat ttaacaaccc ctcttgcacg
     3241 cgcatgccca gttgcatatt ccgtcaattc aacaataact ttatgcccat caactggttt
     3301 taagccgtct tctaaatcaa tttccacttc accaaaaagt cgcttgtcat ctggcatcac
     3361 aattggagta ccagctaagt cttccatata agttccgacg atttgtgttg tcttccgttc
     3421 gacaattttc ttaatcgtac cttctgccaa attatcgcct ttacgtttcg tgattgttgc
     3481 aaaaactaaa tcaccgttca ttgcatcttt aacttcattt ggcgggataa aaatatcgtc
     3541 catttctttc tcttctggga gaacaaagcc aaaacctcgt tcatgtgcac gaaatgttcc
     3601 ttttactaag tccatttttt ctggtaatgc ataccgattc ttccttgagc ggacaatagt
     3661 tccggaatct tccagtttca ctaaagcttt caccattaat ttaaagtcat ccgcattgtt
     3721 taaagctatt tctatttcca aatcttcaag cgcaaatgtt ttatcaggcg ctgaagttaa
     3781 tagattcata attttttctt ccatttgttt ttgttccact tctgtccctc ctctctctgt
     3841 tttaaaaatt gtctattctt gccaatctaa actatctaaa aatgttaaaa tggcttgatt
     3901 tacttctttt cgttctttgt ctaatgtgat gacgtgccca gattctttaa accagtgcaa
     3961 ttctttcttc gttgactcta ctgtatcata aattagctgt gctccgctca catcaaccat
     4021 atcgtctttt tcaccttgga cgaccattat tggcgcataa atcatatcta tttcagccac
     4081 gacgccattt atctcgtcct ttagtttagc gattgtgttc attggggcgt ctttataggc
     4141 aaccatttca gcatcgattt gttcaggtgt tttaccttct aattttttat aattacgcac
     4201 ataatctaaa aagccttgaa ttattggtga tgaactgtcc attcttgttg gagtactcat
     4261 ggctataatt ccctttaacg gcctagaaaa acctaatttt agtgaaaaaa gcccaccgag
     4321 tgaaagtccc gccacagcta tttccgtgta accaagtgat tttaggtgat cataggcttc
     4381 aagaacatct tcccaccaat cgtttggtcc cgtttttaac agtaggtcag gagatacacc
     4441 gtggcctctg tattgaggtg catagcaagt ataattgttt tcttgtaaaa acctacctaa
     4501 tattcttaca tccgctgagc tacctgtgaa accgtgcaag agtaacactg ctcttttgcc
     4561 tttttcgaat aggaatggtt gtggtggtgt tattttcata gtaaatatcg ctccttggtt
     4621 ctttttggag gtttggttga tctgggttgg atgttatttt tgttggagtt ctaggggatt
     4681 ggctgtattt aataatttgt gctccccttt ttgagttgtt cgtccacttt tttttatgga
     4741 aacaacgctc cacttcgtta cgccttgtat tggagttcta gggaagcgga atacgcttct
     4801 ttagaactcc aataaaaaac cacctaaatt ttcattcagg tggttaacat ctcgttactg
     4861 tacaaaatat gccagtgcaa ttagtattgc gaagaaaaca acggatagaa cgatggttgt
     4921 acgatgtaga ataagttcta gtcctcttgc tttttgctta ccgaataatt gctcagctcc
     4981 accagagatg gcaccggata agccagcact tttacctggt tgaagtatga taactgtaat
     5041 taacagtact gatacgatga tgagtaagac cgttaaaact gtactcattg ttctttcctc
     5101 ctaaaaccgc ccaatttgac taagattaat tttaccatat ttggtattat acgtaaaggt
     5161 ttgtttctat acaatagtta aacaactttt tcctctagcc aaactaaatc gtctaagaag
     5221 taaattaagt cttcttctaa aatgtctttc tcacagtcgt tcacgatgtc atgccctgac
     5281 cctgcataga aacacaattg tttatcattt gtatgaatgt gcttaaagat ataattggcg
     5341 ttatctgcgt cgatttcttc atcttgacag ccttggccaa tcatggttgg tacatgaatt
     5401 ttttcaatgt ctcgcgctac gtttttgtag aaagtagcac gtgcttccgt cattacgtct
     5461 atttcaggaa ggtagttttt tagcatttga tctgcttctt gttctactat accttgtttc
     5521 tttaattgtt tagttaaata gttttcgatt gggatatagc gcattttgcg gttgacgttg
     5581 gcgcatagtg gaacaatcgc ttttggtgaa aacgattctg ccattttaag cgcaaaaact
     5641 ccgcccattg cgacaccgac aattgcaatt tcattatatc cgtctttttc aagttgacga
     5701 tatccagcca ccgcatcttc ataccacatt tccggtgttg ttttcaagaa aatagcgggt
     5761 tcatccccgt gacctctgaa gtttggtgca tgcactgtgt atccattttc tgctagaatt
     5821 tctccaagtt ctcttacgtc ttctgtagtc cctgcaaagc catgcaagag caaaacagca
     5881 cgatttcccg cttttaacgt aaagctccga tccgcactca tttttacgca atcctcctaa
     5941 tatcatcact tttataatcc actctattgt agcccatctg aactaaataa gctacctttt
     6001 gagttctgac caatagacca atattaacgc tatccaagga acttgtcaaa cacttttttc
     6061 acaaagctca aacgcgttgc taccaaaggc ttttccggag gtttcatttg tgaatttctg
     6121 cgcttaaatt agaaaagaaa ctatgaatta attgtaacaa ttgtttcggt ttttgccttg
     6181 gtaaataatg aagtccattt cttacaataa ccatttcacc gtgttgaaca gaatgcacca
     6241 ttttctttgt atctttggaa gatattaaat catattcacc cacaacagct aaaagtggcg
     6301 cgcttatttt ttgcaaatcc gcttctgaca tatgtggatg ataaatcgtt aaagcaagtt
     6361 gtcgtttcat ccgctcaaaa aagcgactaa atggcgctaa aagaaatgca gccccgtagg
     6421 cgacacgaca aaataaatct ggtaaaaatc gtatttgatt tacatgatag tttgttccaa
     6481 taacaacgga tgcgatttga cggttcggtt gcaatttccc cattacgaga gcaacaatac
     6541 cgccgtcgct atatccgata actttatatt tatcaatttt caaataatcg agtaacgaaa
     6601 gcatatctag cgccattact tcaaaatcaa gcggtgtatt tcccgcttca cttttcccgt
     6661 gtgcgcggct atctacggcg attacttgat gattagtaga gaggtcatca atcatccgct
     6721 ttaaagaacg atgattttga ccattcccgt gaataagcaa gattggttcg cctttaccga
     6781 ttatttgata aaacaagtta attccattga tttctgcaat catatagcat ttctccttgc
     6841 tgaaaacatt ttctaccctt attttacacc tgattatact tgatttccta taaaaaagct
     6901 tccattttca ttaaaatacg cctgattctt ttaaaactag aatcaggcgc accgtttatt
     6961 tcataagtct tcggtgaaac tgttgttggg gcatatctgc gttaatgatt ttcttttgca
     7021 cagaatgttt ttccgctaag gggtggcttt tttcatgcac cacagcgtct ttgatttttg
     7081 gagtttcgag cacttttgag gcctgactat tttttacttt catcagcatt acctcctctt
     7141 ccaaatcatt acccctctcg ctatttttaa aacagaaaaa actccgcgaa aatgttactt
     7201 ttcgcggagc ttagcgtttt attcaatcaa cttatttttt taagttgtag aaagtttcgt
     7261 taccatggta ttcagcaaga tcagccaaat tgtcttcgat gcggagtaat tggttatatt
     7321 ttgcaacacg gtcagtacga gtaggcgcac cagttttgat ttgaccagcg tttgtagcta
     7381 ctgcaatgtc agcgattgtg gaatcttctg tttcaccaga acggtgagag ataactgcag
     7441 tgtagccagc gcgtttagcc atttcaattg catccaatgt ttcagtcaaa gtaccgattt
     7501 ggttaacttt gattaggatg gagttagcga tacctttttc gataccttct ttaagtttag
     7561 ttgtgttagt tacaaataga tcgtcaccta ctaattgaac gcggtcacca atacgttctg
     7621 taagtagttt gaatccgtcc cagtcgtttt cgtctaggcc atcttcaata gagatgattg
     7681 ggtatttagt aatcatttct tcataccaag ttaccatttc ttcagaagta cgagttacgc
     7741 cttcaccttt aagttcgtat ttaccagttt cgcggttata gaactcactt gatgcagcat
     7801 ccatcgcaag tttaacttct tcgccaggtt tgtaaccagc atctttaatt gcttgcatga
     7861 ttgtttcaag agcttcttca ttggatttaa ggtttggagc gaatccacct tcatcaccaa
     7921 caccagtgtt taagccttta cctttaagta cagctttaag tgcgtgtagg atttcagcac
     7981 ccatacgtag agcttcttta aagtttggag ctccaacagg cattaccata aattcttgaa
     8041 cgtcgacatt gttatcagca tgttctccgc cgttaaggat gttcatcatt ggaactggaa
     8101 gaactttacc gttcactccg ccaagatatt catataaatg tacgcctagt tcgtcagcag
     8161 cagcacgagc agcagctaaa gaaacaccaa gaatagcgtt agcacctaat ttacctttgt
     8221 taggtgtacc atcaagttcg atcattgctt tgtcaattcc gatttgatca gttacgtcaa
     8281 aaccgataat tttgtcagca ataatgtcgt ttacgttttc aacagctttt aaaacacctt
     8341 ttccaaggta acgagctttg tcgccatcgc gtaattctac agcttcgtat tcaccagttg
     8401 aagcaccact tggaactaaa gcgcgaccaa acgcaccagc ttcagtataa acttcaacct
     8461 caacagttgg gttaccacgg gaatctaaga cttcgcgagc ataaacttca gtaataatag
     8521 acatttataa ttctctcctt tgttgggatt aattgaatga aatgaacaaa aaattcactt
     8581 catattcaaa gacccatccg tttttaaatt cgtatttatt gtagctctgt ttgcaaaaaa
     8641 actaaagtaa taactaaaat tatttttgaa ttaaactttc acctgtcatt tcggcaggtt
     8701 ttttaacgcc aagtaaatca agcatagttg gcgcaacgtc agccagacga ccaccttcac
     8761 gaagcgttac accttttttc gttacaatta ctggaactgg aacagtagtg tgcgcagtgt
     8821 gcggttttcc ttctggagta gacattgttt cagagttacc atggtccgca aagataatag
     8881 ctgatccacc tttttctaaa ataaggtcta ctacacgacc aagattttca tctactgctt
     8941 cgattgcctt aatcgttggc tcaagcatac ctgagtgacc aaccatatct gggtttgcga
     9001 agtttaagat gatcgcatcg tgtttgtcgt ttttaatgtc ttcaacaagt gcatctgtta
     9061 cttcatatgc gctcatttca ggttgcaaat cgtatgtttc tacttttggc gaattgatta
     9121 gaatccggtt ttcaccaggg aattcttcat ttcgtccacc attcataaag aatgttacat
     9181 gtggatattt ttctgtttca gcgatacgca gttgcgataa gccttcatta gaaagtactt
     9241 cgccgataac atttttcatt tcaattggct caaaagcaac ttcagcatca atgcttgggt
     9301 tgtaaagagt cattgtaacg aatttgatgt ttttagggtg gttagccccg cggtcgaaat
     9361 gatcccattc tttatcagtg aatgcattag aaagttgaat cgcacggtca ggacggaaat
     9421 tgaagaaaat aactgcatcg ttgtctttaa ctgttgcaac aggtttgcca tctttagtaa
     9481 tgatagctgg aacaacgaat tcatcatttt tgtcattagc ataagaagct ttgacaagtt
     9541 cgattggatc ttcaaatttt tcaccttcag cgtttacgat tgctttgtat gctttttcaa
     9601 cacgttccca gcgtttatca cgatccatcg cgtagaaacg tccagaaaca gtagcaatcg
     9661 cgccatagtt taagtcacta atagcttttt gtagtgtttc taaatattct agtgaggatt
     9721 gtggtgccac gtcacgtcca tcaaggaatg catggatata aacgtttttc acgcctttat
     9781 ctttcgcagt ttctaaaagt gcaacgaggt gattaatgtg actatgcacg ccgccgtctg
     9841 atagtaaacc gaaaagatgt aagtccgagt tgttttcttt tgtatgagtg aaagcattgt
     9901 ttagggcttt attctcttgg aattcgcctt cttcaatagc tttgtcaata cgagttaagc
     9961 tttggtagac aatacgtcca gctccgatgt ttgtatggcc aacttcagag ttacccattt
    10021 gaccttctgg aagaccaaca tcaaggccgg cagctttaag ttccccgtga ggaaaattag
    10081 cccaataacg gtcgaaattt ggtttgtttg cttgagctac agcattacct actgtttctg
    10141 cacgtttacc aaaaccatcg aggataataa ttgctacagg tgatttactc attttatttt
    10201 actgcctcca ataatgctaa gaacgatgct ggttctaagc ttgctccacc tacaagagcg
    10261 ccgtcaatgt cggactctgc aagataatca gcaatgtttt caggttttac gctaccgccg
    10321 tattgaatac gaactgcgtc tgctgctttt tgagatacag cgtctgcaac ttctgcacga
    10381 ataactgcac aagtttcgtt tgcatcagca cttgtggaag atttcccagt accgattgcc
    10441 caaattggtt cataagcaat aacagatttg attacttgtt cttccgttaa tccagcaaga
    10501 gctgcacgga tttgaccacg tacccaagta tctgtttgac cagcttcacg ttgatctaat
    10561 gtttcaccac agcaaatgat tggtgtcatg ccgtgtttga agattgcatg tgcttttttg
    10621 ttaatatctt cgtctgtttc gtggaaatac tcacgacgtt cagagtgtcc gataataaca
    10681 taagaaacac ctaaatcagc aagtgcaaac gggctaattt cgccagtgaa agcaccttcg
    10741 tcttcaaaat aacagttttg tgcagctacg cgaagattag ttccttcagt aagacgaact
    10801 aattcttgta aaaatagcgc cggtgcagca actactgatt caacagcatc gcttgatggc
    10861 acgttatttt ttacgtcttc tgcaaattgt cctgcttttg cagcagtttt gttcattttc
    10921 cagttaccag caataattgg tttacgcatt tggataaaca tcctctcgat attaaaaatt
    10981 atttttggtt cagcttattt gtcgctaata gaagcaacgc caggaagctc tttaccttca
    11041 agatattcta atgatgcacc gccaccagtg gaaatatgtg tgaatttgtc agcaaaacct
    11101 aagtccatag ctgctgctgc ggaatcccca ccaccgatga ttgttgttgc atccgttaag
    11161 tttgcaatag cttcacaaac gccaattgta cctttagcaa agttgctaag ttcgaatacg
    11221 cccattggac cattccatac aactgtttta gcgccttgaa gttcttttgt aaataagtca
    11281 attgtagctt gaccaatatc tagtcccatt tcatcagctg gaatgctatc tgcactcact
    11341 gtatggaaag gagcatcgtt actgaattct ttagatacaa ctgcatcaac tggcaatact
    11401 aatttatcgc cagctttttc aagtaagcct ttagcaagtt caactttatc tgcttctaaa
    11461 agagatttac caatttcttg accttgagct gccatgaaag tgaaagtcat tccgccgccg
    11521 acaagaactt tgtctgcttt tgtaagtaag ttttcgataa caccgatttt gtcagaaact
    11581 tttgcgccac ctaggattgc tactagtgga cgtgctggat tatcaactac accgccgatg
    11641 aatttaattt ctttttccat caaaaatccg gccgctgatt ctaagttaga agcgattcca
    11701 acgttagacg cgtgcgcacg gtgagcagta ccgaaagcgt catttacgaa aacgtcgcca
    11761 aggctagccc agtattttcc aagttctgga tcatttttgc tttctttttt accatcaata
    11821 tcttcaaaac gtgtattttc aaaaagaagt acttcgccgt cttttaactc atcaattgct
    11881 ttttcaagtt ctggaccacg agtagttgga acgaatttca cttcttttcc aagtaattcg
    11941 cttaaacgag cggctactgg acgaagagat tttccttctt tatcttcttc tgtttttact
    12001 tttccaaggt gagaaaatag aattgcttta ccgttttgtt ctaagatgta ctcaattgtt
    12061 ggaagtgcag caacaatacg gttgtcgtta gtgattttgc cgtctttcat tggcacgtta
    12121 aagtcaacac gaactaaaac ttttttgtct tttaaatcta aatcagttac aactttttta
    12181 gccatttaga gttcctccat taattttaaa ggattggggt cgcccccgtt atttcagaaa
    12241 ataagcggaa acaatagtgt ctccgcttat tcttgttatt gctgatgtga ctagcacttc
    12301 agtaaaatta atctgctaat tatttagcga tttttgcaaa gtattctaaa gtacgtacta
    12361 attgagcagt gtagctcatt tcgttatcgt accaagctac agttttaact aattgttgat
    12421 cgccaactgt aagaactttt gtttgagttt cgtcaaataa tgaaccgaaa gtcatacctt
    12481 tgatgtcaga agaaacaact tggtcactag tgtaaccgaa tgtttctgga tcagaagctg
    12541 cttccatagc tgcatttact tcatcaacag taactttttt gtcaagaact gttactaatt
    12601 cagtaaggga accagttgga actggaacac gttgagcagc tccgtctaat ttacctttaa
    12661 gtgttggtaa tacttcaccg atagctttag cagcaccagt tgtattaggg ataatatttt
    12721 cggcagcagc acgtgcacga cggaagtcac cttttggatg tggagcatct aatgtatttt
    12781 ggtcaccagt gtaagcgtga attgtagtca ttagaccttc aacaacacca aatttgtctt
    12841 ctaaaacttt agccatagga gctaaacagt tagtagtaca gcttgcgcca gagataactg
    12901 tttcagttcc gtctaatgtt tcatggttta cattgtaaac gattgttttc atgtcgccag
    12961 ttgctggagc ggagataaca acttttttag cgccagcttt aatgtgtaat tcagctttgt
    13021 cttgcgctgt gaagaaacca gtacattcta aaacgatgtc tactcctagg tcaccccatg
    13081 gaagttcttc tgggttacgg ttagctaata ctttaacttc tttaccgttt acgttgaaga
    13141 aaccatcatg tacttctact tcaccgtcaa aacggccttg agttgtatca tattttaaca
    13201 ggtgagctaa cattttagcg tctgttaagt cattgattgc aacaacttca attccttcca
    13261 cattttgaat acgacggaat gctagacgtc cgatacgtcc aaaaccatta ataccaactt
    13321 taactgtcat aagtcaattt cctccttgaa aatagtgttt ttttatttca aaagggtatt
    13381 actccctttt aaaagcgatt ttgctgctcc ttcatccgtg attaaaatcg tattttttgg
    13441 agcacttttc atatacgatt tgattgcttt ggctttcgat gtaccgcctg caacagcgat
    13501 aatgtgcggg atttgcgcta agtcttcgaa ttgaagaccg aatgtaggga ccttatgtac
    13561 aacctcgcct tgttcatcaa aataataacc aaatgcttca cctacagctt tacgacggat
    13621 gattttttca agtacatctt cgccggtatg tctgcgtttc gccatcgcga gcgcatcacc
    13681 tatgcctaaa ataatagcat ttgcagattg tactaatcgt aagccttctt gaattgccgg
    13741 ttctttcagt aaagaacgat aggcttcttc gcctaattgc tccggaacat agagaacgcg
    13801 gtgttttgtg tttgtctttg ttgccatctt atcacaaatt gtattcgctt gattgtcaag
    13861 gtcttcacca atacctccac gaccgggaac gaaaagtagt tctctgcctt ttgcgaaatc
    13921 agttgtcatc atttcggcaa cagtagccat tgtagagccg cccataactg cgacgatgtt
    13981 tcttttttcg gtgagcgcca tgtctaattg ttcaaccgcc acacgtccca tttcttcgcg
    14041 gacccatgga gtatcatcgc tatcaccttg caccaccaag cattttttga tttgcaattt
    14101 cttcgctaat tgttcttcca ttgaatgtaa ccctgaaagc tgattcatga cattttccaa
    14161 atcgcgaaaa acgaccaagc cttctttagt aacggtcatt ccggaagaag caatttctac
    14221 taaaccttgt gctttcaaaa attctacttc gccgcgcagg acgcgttcac tcatgcctag
    14281 cattccggca agtgtccgtc tcccaactgg ttcagaaaaa taaatcgagc gtaggatttg
    14341 gtagcgtttt tgcataatca tcaaaacgtc gggcaataac tttttctgaa tgttaattaa
    14401 gtctgacatt tttaattgct cctcatcttt ggacgcttaa cgacccactt agtcatctga
    14461 cgtcccgtta gaactaaaaa aagtagagat agaggttttt acaactttca agactattaa
    14521 actagctact tcagcttgtt aacaaagtgt ctctcaatgt gatttttacc ccttctcttt
    14581 ctgcttacgc tggtgaatct tttttatgtt ctttaactac cctacgttcc ctattctaac
    14641 agtcttggca caaatcttca agtgttaagt gggacattta tgaaatattc acctgaaatt
    14701 tacaattaaa tcttaaactg caaacttcta aataggctat actagttgtt ttccacctct
    14761 tcaaaaaacg aaacatgctc ttagttattt ttttgtttta aaaagacgtt ttttgtccca
    14821 cacacggctc gtgaggcaaa aaacgtcttt taaaatcttt ttcttttaga ggaagaagga
    14881 atatttaatt ctaaacgata ctttgcgata gctcttcttg aaacttgaat ttctttttct
    14941 gcgagcatat ctactatctt ttgatcggag agtggtttta atttatcttc tgctgctaca
    15001 aattcttgta ctagcttttt gatagttgta cttgaaatat cacctgtgtt ttcgttctcg
    15061 gaagatttct tttgtaaacc ggatgcaaag aagcgtttta attcgtacac accattcgtt
    15121 gtttccatgt attttccatt caccgcacgg ctcacggttg attcatgtac accaagctct
    15181 tccgctactt cttttaaggt taatggttgt aaatgcgcgg aattatctag gaaataagct
    15241 ttctgatgat tgacaatcgc ctctccaact ctttgcaagg tgttttcgcg ttgttcgatg
    15301 ccttttttta tccaatcaaa ttcgccggct ttttcgcgta gaaattgggc gacgtctttt
    15361 tcttcggttg ctcgcatcgt ttcgtagtat gcttcttgga aacgcacttg tggcagaaat
    15421 tgttttgcta gtgaaacagc aaattcatct tcgtgttgga gtaaaattaa atccgggaca
    15481 acatattgaa cgcgttcaga ctcaaattca gaacccggct ttggatttaa ggtttgaatg
    15541 tagtcggaaa cttcttgaat gtcttgcaag ctaacatcca tttctgcagc gattttcttc
    15601 cattttttct ctgcaaattc cgtgaagaat ttttggataa cgtcataggc aatataagga
    15661 gcatccggcg agcgttcgat ctgtagtaaa atgcattcac gcgcatctct tgccccaacg
    15721 ccagctggct ccatgctttg caagatttct agaccttcta acacactaga atcatccatt
    15781 aaaagcgccg cactgacatc tttcaaatct atttgtaaat aaccattgtc atttaagctt
    15841 tctattaaat ataagacgat aattttttgt gtttgcgtta catccattaa atgtagctgt
    15901 tcttttagcg catcggctaa cgtcagctta ttgtcagcta tttgttctag ccaatctgta
    15961 tcatcagaac ttccagcgct ttttcgacta ctgtaagaaa agtctgttgc aaaatccgag
    16021 cctggaatca cttcaattaa tgggttctcg agtgctttat cttctaaaaa tgccactaaa
    16081 tcagccgttg caaattgaag cattgcaata gactgggaca attgttgcgt catatttaat
    16141 ttctgcgact gcttttgttg ttgcttttgg acgaaattag attctaaacg cacattaaaa
    16201 cctccattaa aaattcgtct gatatacctt ataccaaact aaattccatt tattgtcttc
    16261 attataacat gccatttttc aaattacagc agattctctt tgttctattt caaaaaaagt
    16321 ccaagcactt cttacagtgc ttggactttc gtttattttg gtaaatggtt taagaagttg
    16381 cgcgatgcaa atccttctat ctcttcttta gtgtagtgtt tttcgagtgt ttcaaggaag
    16441 ctttgatatt taccgacgtg ttcgaggcct ttgacatgat ctgggatacc atcaaaatct
    16501 gaaccaaaac caatgttttt caatccgcca agctcgcata tatgatcaat atgacgaata
    16561 acatcctctg tatcagccac accattattt gttgtgaaaa gtggatagaa gactacatga
    16621 atcatcgcat catgctcgat catcgctttg atttgttcat catctaagtt tctagggtga
    16681 gaacaaattg ctttggcatt tgaatgacta gcaatcacaa attcagcctg ttccaacgtt
    16741 tcccaaaaag cttttacact caagtgagaa acatccgtga atacttttct ttcatttaaa
    16801 agatggataa tgtcttttcc gaagcgggtt agtcctgcgc cacgttcttc cataatgcca
    16861 tccgctgcca aattggcgtt gttccacgtt agtccgacag ataatacgcc accatcaagt
    16921 aattgcgtta atttatctaa atcacgtcca attggttcaa tgccttctaa cgtcaacatc
    16981 gcgccaattt tatcttcagg tagattttct aaatcacacc attttttcac atgatgaatg
    17041 attccacctt tgtgcagtac gtgttgttta aaaatattaa cttgttcaac cgctttcttc
    17101 catttatgtt caacagggat atcttcatca agaaaaatag cgaatccttg tagtaacatt
    17161 ttagcctcta taagccgttc aaaattcaca tcaagttctt ctgcatcttg gaaagtgtat
    17221 tttccttttc cagcctgtag cttgtaaagc gcatcacagt gggtatcaat tactctcatt
    17281 ttctgtcgtt cctcctttta gatacatcta ttatatactt ttcagaggaa tagacaagag
    17341 atttttcaaa gtcgttttca ttttgtcatc ttatgctgtt tacctggcca gaacgcccat
    17401 tttccaagga gcacagtaat tgatggaact aggaacgggc ggacgatgaa ggtatcgagt
    17461 aggacaccaa ttgccgtaat taagccaaat tgtactaaga gctgaattgg cagtgtagtt
    17521 aggactccga aagttcctgc taaaattaaa ccagcagacg tgataacccc gccagtttgg
    17581 ccaacacctt ctgtaatcgc ttttctaagt ggcattttct tgctgttttt ccaaatacta
    17641 gaaatcataa agatattgta atcttccccg agtgcgacga tgaaaacaaa ggcatagaga
    17701 ggaattaagc cagaaatcgc ctctactccc atcgcgtaat gaatgatgac ccaaccaagg
    17761 ccgagcgctc caacgaagga caagagaact gtagcgacta agtaaagcat tgctgtaatc
    17821 gagcgcaagt agcataaaag taaaatcgca atcaaagcga taacaagcgg aataatcact
    17881 ttttcatcgt gctctgtcac cgcgcgatca tcatattgtg tcgcagtttg tcccgcaata
    17941 tatacgtcat ttcctttgtc ggctgcggca cgtacttttg gaacgacatc cattgcttca
    18001 ttgctataag ggttatcttt taaaataagt gtatattttt gataaccttt gcttcgttct
    18061 ggaccagtca ctgaagccac tccatccaca ttttcaagcg aactcttcat tgattctttg
    18121 gagtttacca ctacttccat tggcgcaagc ataccggcac caaaatgatc actaattaag
    18181 gtaaatcctt cccgagatgg catatcttct gggaacgttg aaagtgtgtc atacgtgtat
    18241 ttcacctgag ttgtaaaaat cccacatcca attaaaataa tcaatgtgat aattaaaatt
    18301 cgtacaggat gtttcgcaga catttcacca attttatgcc aaaaacggtt ttctttgtgg
    18361 tgttttggtg ttttgccttt tttcttcgcg cgtgtttctt ccatttctag ggttcttggg
    18421 acaaatggcc agaatgacac acgaccgaat atgcctagaa gtgctgggac aagtgttagc
    18481 gaggaaatca tcataatgaa aatcgctaaa ctaaatggta cggcgaaatt gtggaatgaa
    18541 ccatattctg ctgctaataa tagaagtagt gcggccatta cggtcaatcc actaagtgca
    18601 attgcgccgg ctgttccgct aaatgcttct ttaaatgctt ggaatctgtt tttctctgtg
    18661 tgcagatggc tgcggaatct ggatattaag aataaacaat aatccgttcc ggcgccaaat
    18721 agtaatacgg tcattatcga gagcccttgt gagccatatg tgataatacc ttctttcgcg
    18781 agtaacccaa gaatcggcgt aattactaag taggcaaaac cgactgcaat caaaggaatt
    18841 aacgctaaaa ttggcgaacg ataaattact agtaaaaaga ctaaaacaag tagtactgtt
    18901 ccgattagca gcgaaacgtc cgcatcttta aatagtccac tcgcatccac gctaatacca
    18961 gccggtccag ttgtccgagc aacaagcgca tcatcagcag atactttctg tgcaaatgga
    19021 ttttctccaa tggttgtttt agccgctgat tcaagttgct tgaagctctc tgttagttga
    19081 tctgaagtcg cactgtcttt cataataacg gtttggataa aagtagttcc gtctttagaa
    19141 acttgttgtt tgagcgccac gggtggcatt ttatcgtaag gaaccgccat tttttgatag
    19201 tctaccgggt tttcggtcaa ttctttgctg tatttttgaa tattaactaa gtcttcggtt
    19261 gttaaaccag ttgaacgata ccaagtgata agcgctggta ccccgtccgt tccagcaaat
    19321 ttgtcgtcaa tgagtttttg ggcgacaaca gaaggctctg aattcggtaa atctttcgca
    19381 gcgtcatctt tgtaatcagc tgcttttgga aagaaaaact gtaaaataat aattgcgata
    19441 atccaaatac ctaatgttat aaaccggcct ttcttgccac caaccccact ggcaatttta
    19501 cttaaaaatc catctttcat tataaatccc cctttagttt gcttattttt ttcgtttatc
    19561 attcgataag tgaaacacca aaaaaagaag cacgctaaat tatacctctt ttttacatat
    19621 accaaacatc attaagttga ttaattcatc aatttgttct gtagtcgttt gcttttgcgc
    19681 aaagctgcct ttcccagaaa aaagagggct aatagtggac aaacagtatc tcgcagcagt
    19741 ctcagcactg acaccatcac gcaattcgcc agcattttct agacgctcaa aaaatagttg
    19801 aaatggttcc aaataggttt tttgccataa tttataaagt aaaaattgat tttctggttt
    19861 catttcatta agaatatcgt gaatcattaa tagaatattg gttggatgtt cctcaattaa
    19921 cataattaac atatcatgta attgttcttc ttttgctttg gtcacttgca taattggatg
    19981 catttccact tggatatttt gcgtcaattc acgaaccact tcaatatata gggattcttt
    20041 atcttcaaag tggtgatata gtgccggttg ggtaatgttg gcaattttag ctatttctct
    20101 tgttgaaact gcccggtaac ccttttccat aaataaatca cgtgctgtat tcaaaatttt
    20161 tcttctagtt attcctaatt cttctgcccg agtccgcttc ttttccatca tcaccccacc
    20221 tttcttattt tgttgcagtt agtaatggaa ggtttttatt aatgagcttt tctagtgttt
    20281 ctttatgcca tttacgacct agaacacgct tactaacaag atattttcct tcctccagct
    20341 cgccttcttc ggtcactgca cgaatatata accgataaac taatttcttt ttctcaagcg
    20401 caatttgctg aaccgtttcc ccatccaaaa agtgcatttc cgcatcactt aatttaaata
    20461 caaatgtaaa aattcccgct tccgtgaacg cgagaataag cgaatgtctc cctcgcatat
    20521 ggggccctgc atataaaaaa tcaatcgttt gaacggtcaa attattgtca gcactatatg
    20581 ttcttacttc tttttctaat cggtctttca aactagcagc caaaataagc gcctcccttg
    20641 ctgatttata ttttaccaga aaatggcggg ttgaagtagg gaaagttttt tgatacttaa
    20701 aaaggattaa attatttccc ttcataattc ataaaaaagt caaatcaagt attctcttct
    20761 tgattcattc atgttaatat caatattagt gtttattaag cgggtataaa cgttctaacg
    20821 attatataaa taataaaggg aagttggttt gcaaaatggg agaattaggt aatatcgaaa
    20881 cacgaaacgg gagaacatca ttttttgacg gaggtttact gcaatatatt ggttggacaa
    20941 ttcttggcac tttggtgacg atttgtacga ttggtatttg ctatccatgg gctttatgta
    21001 tggtttatgg ctggaaaatc aatcatacag ttattgaagg aagacgcttg aaattccaag
    21061 gttctgcggt tggacttttt ggtcactgga ttaaatggct cttcctaaca atcattacta
    21121 tcggaattta tggtttctgg gttttcatta aactagaaga ttggaaagta aaaaatacga
    21181 tttttaaata aaatgaaaaa acatcttaca acatggcttt tgccagatgt gggatgtttt
    21241 tttagtatgc cctcggaggg aatcgaaccc ccattttaag aaccggaatc ttacgtgcta
    21301 tccgttgcac cacgagggct atatgtaggc cagaaatgct taccgtacga ataataatta
    21361 tagcgaaatt cgtagtgttt tacaagtttt attttaaatg aagaagccag cgcctccaaa
    21421 gatttgctgg ctcaagtatt aatttaataa tgtccaaatt gatgaactgt caggcttctc
    21481 gcctcgtacc caccatttcg cttggtatgt ttttccgtta tacgtaactt tatctccgcc
    21541 attataggct ttttgagcat tccagatttg gatatctcta cttgctgttt gccaaacatc
    21601 acttgtatct ggagtgttcc cttttgtcca ccatttcgct gtataagcta ctccgttata
    21661 gtaaacttgg tcacctgcat ggtaaatttg gtccgatttc caggtgttca gtggatctag
    21721 cggttttgtt ttaatagtga tttcattact tactaatgaa cgattgccag atgtatctac
    21781 tgcatacact ttataattat agcttttatt gctggctaat tttgtatctt caaacatggt
    21841 tttcgtggat gttgcaattt ttgtattgtt acgataaatt tcataatttt tcacttctac
    21901 attatctgtg gaggcttgcc aacaaagagc aatagttgtc tccgtttgtc catgagacat
    21961 taaacttttt ggtgcagttg gtgcttcatt atctactgct ggggcttctt ttgtcgtcac
    22021 atcaatactg tcgcttaatg tagatttgtt tccggcgaaa tcttttgctc gaacagtgta
    22081 agtgtatgcg gtatttgatt ctacagctgt atcctcataa gaagctgttt gactttctcc
    22141 gagtactacg ccatcacgta aaatttcata accttttatt cctacgttat cggtagaaac
    22201 agtccaggtc aaacttacat tcttagcggt agtagttgct gctaaattag tcggttctgt
    22261 cggcgcttcg ttgtcaacag ctggtgctac actagaatta ataatgtttg catcaattac
    22321 ttgatagaat gcatttcctg tatcagcaat gttccaaacg cccaaaataa cgtagtatcc
    22381 tgaacgatca tctggaatat taatttcttg ttttgttaaa gcatttggta cgcttccatc
    22441 cgcttcaatc gttgtgagtg gctctaatga tgctctagtt aacggtttat ttgggtccca
    22501 acccttttta gtaataaaat attgccagct gcttgttctg tgtggcgcag ttaatgtcca
    22561 ttctacagtt aatgggcctg attgtatatc tacttttgcc caacggtttg cagtttgagc
    22621 gtctaacagt gaatatttcc caccgcccgc aatactcccg tcagcaggtc cgcttgctgg
    22681 aaatcctttt ggagcctcca cactttgtgg ttcatattgt gctgatccaa ccccaacatt
    22741 aatccctttg ttggctaaat atacacgact tgctggtttt gatatgtatc catgagctga
    22801 agcagttgtt tgaaaaagaa ctacagctaa cgtaaacacc gcaaaaaaca ttccaatctt
    22861 cgtcattttc ttcatgatgc accttccttt cagcatagtt cattatacct ttttgttaaa
    22921 ttttatagaa ataattcgcc tcagacttta tcgtttgacc tagtttgacc attcgtgtat
    22981 gatataaaca aagctaattt aaaattcaca tttaacagga ggaatcttga tatgaactta
    23041 attccaacag taatcgaaca aactagccgc ggtgaacgtg catacgacat ttattcccgt
    23101 ttattaaaag acagaattat tatgttagga tctgcaattg atgataacgt ggcgaattcg
    23161 atcgtttctc aattactctt cttagatgca caagatcctg aaaaagatat tttcctatat
    23221 atcaattcac caggtggaag tatttcagct ggtatggcca tttacgatac aatgaatttc
    23281 gttaaagcgg acgtacaaac tatcggcatg ggtatggcag cttccatggg ctcattctta
    23341 ctaacagctg gtgcaaatgg caaacggttt gccttgccaa acgctgaaat tatgattcac
    23401 caaccacttg gtggcgctca aggtcaagcg actgaaatcg aaatcgctgc tcgccacatt
    23461 ttaaaaatca aagaacgtat gaatacgatt atggctgaga aaactggtca accgtatgaa
    23521 gtcattgctc gtgatacaga tcgtgataat ttcatgactg cacaagaagc aaaagattac
    23581 ggcttaattg atgatatcat cattaacaaa tctggcttaa aaggctaata aaaaaaagag
    23641 gttttgcaca aaatgcaaaa cctctttttt tatactttat tttacacgaa gcgctgaatg
    23701 ttttcttccg tagaatgtat acactagtat tcctatcaca aaccaaatac cgaatgcaat
    23761 ccatgttgtt ttagataagt taatcattaa atatacacaa agcaaaaagg aaagtgctgg
    23821 tactactgga taaaatggcg ttctaaatcc tttttgattc aagtctggat ttctccgtaa
    23881 aaagaaaatc ccaatagaaa ccatcgcaaa agcaaacaac gtaccaatat taattaattg
    23941 tgctaaatct gccatcggta cagtagaagc aattagtccc attactgtcg caaaaatcat
    24001 cgtatttctc acaggtgtat catttttgct tatttttgag aacgattttg gtaataatcc
    24061 gtcacgtccc attgcaaata acaagcgtgt accaccataa gacataacaa gtacaaccgt
    24121 tgtcatccca acaatcgcac caactgacaa caagcccgca atccagtttt gattaatagc
    24181 ttgaagcgcg aaagcaactg gtgcactaac atcaactaaa tccgtataag gaacaacccc
    24241 tgtaagtact gcagaaagta aaatataaag tagtgtacag attgccagtg aagaaataat
    24301 tcctattggc atattttttt gtggattttt cacttcttcc gcggcacttg atacagcatc
    24361 aaagccgata taagcaaaga aaactgtgga agctcctgta atgactcctt gtacaccaaa
    24421 cggcaagaac ggcgtccaat tatcaggttt cacatagaaa gctcctacta aaataaataa
    24481 tacaaccact gcaattttta ctaacaccat aatattattc actcgtgtgg attcacgaat
    24541 accaaaacta agtaaaatac caattaccat aactactaca aatgcaagta aatcaaaata
    24601 ggttccggca ctcgggtcat aagctgaaga aatcaccgtt ggaatatgta agtcaaatcc
    24661 tgctagtaga ctcttcatat aagaagacca accacttgcg attgcagcaa cagccagacc
    24721 atattctaaa atcagtgacc accctaaaat ccatgcaaca ccttccccga acacatggta
    24781 actgtaagta tatgcgctac ctgcgactgg taatttagaa gcaaattccg aataacataa
    24841 tgccgccaaa cagcaagcaa ttcccgcaat aataaaagaa ataataattc ctggtcccgc
    24901 aatgacagaa gctacctgcc ctggaagaat aaatatccct cccccaacaa ccgctccgac
    24961 tccaagcatc gttaaatcaa acgctcctaa cgttttgttc agatgatgtt tatctgtcgc
    25021 tgggttatga aaactctttt ttctgaaaaa agaattaact ttcgtcataa aaattcctcc
    25081 ttcttaaatt ccaattttca gttaatttat atgtgtattt ttaaactaac ttgaaaacta
    25141 ttattcatag taccataaat agattgaaaa atatacaaca tttgtagatt ttcgtacaaa
    25201 aaatgttcat atatggtgta aatatttttt cttggttttt tcgtgttatc ctttagacct
    25261 ctaaaaaaga aaggactgaa tacattgaga aaagttttca tgtttttaag cacagcttta
    25321 ttattagcca ttttgtcact aagctttact ggtttagatc tgaaggcaaa agctgcttct
    25381 gatttatatc cactacccgc tccaattatt gatgttttcc cagatgatgg attagccaaa
    25441 gatatggcta gaaacttaaa caaagactct gtgaatgatg ttattgatca agatgatttg
    25501 gatgcattaa ctagtttagg gtttgaaaca catacgatta cgaatgattc catgcaatta
    25561 ctagagcgtg ccatgtttaa caatgtcaca gatgtaagta ttatggaatt tggggctaaa
    25621 ttaacggagt tccctgatat tactacaatt ccacatttaa aaacgttatt ttttgctgat
    25681 tcacctggaa gattaactag aaacttatcc cttccaaact accaaaatta tcctgaaatg
    25741 gataccatta caatgagcgg aaataattta gtcggctcta tccctgactt taccgggatg
    25801 cctgctttaa aacagcttta tatgtctgat atgtcaatta caagcgatga acttcctaat
    25861 tttaataata ttcctttact tattacgttg gatctaagtt ctaaccaatt gacaactatt
    25921 cctgattttc aaaa
//
LOCUS       DASDXX010000018        24891 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.018, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000018 DASDXX010000000
VERSION     DASDXX010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 24891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24891
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.018"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            94..954
                     /locus_tag="U0280_000612"
     CDS             94..954
                     /locus_tag="U0280_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HEM2270569.1"
                     /translation="MNIMIALIPALLWGTVPLIITKFGGSTRQQTMGMTLGALTFAVI
                     VFFFTDPVYTLKTVGISFITGCLWTVGQMFQLQAFKIIGVSKAMPISTGMQLVGTTLC
                     GVILFHEWDTTLRIILGFIALALIVGGIFLTSYAEKEEDGTNALKQGLITLFISACGY
                     VGLVVLIQGFKIDGINAILPQAIGMVLSALIMTHSGGTEKRFNKRTLLLTIPGIIWAA
                     GNVAMVHANQLVGVATGFSLSQLGVVISTIGGIVLLKEKKTQKEMFFVIVGVVLVVLG
                     GILIGVAKGA"
     gene            1023..3020
                     /gene="metG"
                     /locus_tag="U0280_000613"
     CDS             1023..3020
                     /gene="metG"
                     /locus_tag="U0280_000613"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEM2270570.1"
                     /translation="MLPEEKNTFYITTPIYYPSGKAHIGHAYTTVAGDAMARYKRLKG
                     YDVFYLTGTDEHGQKIQAKAKERGISEQEYVDEIAEGFQELWKKLEISNTDFIRTTQD
                     RHKTSVEKIFEQLLEQGDIYLGEYEGWYSVSDEEYFTETQLEEVYKDENGKVIGGKAP
                     SGNEVELVKEESYFFRMSKYADRLVEYYNSHPEFILPESRKNEMINNFIKPGLEDLAV
                     SRTTFDWGIKVPGNPKHVVYVWIDALSNYITALGYNTDNDTKFQKYWPADVQIVGKEI
                     VRFHTIYWPIMLMALDLPLPKMVFGHGWILMKDGKMSKSKGNVVDPYMLIDRYGLDAL
                     RYYLLREVPFGSDGLFTPEDFVDRVNFDLANDLGNLLNRTVAMINKYFDGEIPAYQGN
                     VTEFDQTLVDFKNNVVKEYEGSMDHMQFSVALNQLWSLISRTNKYIDETAPWTLAKDE
                     DKRTELASVMTHLAENLRIIAVLLQPFLTRTPGEIFLQLGLQEENLKKWDSIYGYGEI
                     PAGTTVVKKGTPIFPRLEAEVEVTYIQDEMKGSAPAPAKEAAEVEALETPQIGIEDFD
                     KIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVS
                     NLKPVKLRGLMSEGMILSGEKDGKLSVIEASSALPNGAKVK"
     gene            3184..4398
                     /locus_tag="U0280_000614"
     CDS             3184..4398
                     /locus_tag="U0280_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEM2270571.1"
                     /translation="MDILRKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMS
                     TLTYILDDLQQEGIILEGAETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDL
                     NAEIMENTSIPFSSEKKPEEAIELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGT
                     VIRSTMLGWENVALEAMLHAYFPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVG
                     AGLGLSVVINRQIYYGAQGGAGEFGHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGE
                     ELKEAYPTSELKDFHFDKVAKSARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVI
                     IVGEGLHHRDLFLTKIDEIASQNFFSGAGFETEITTTSLEDPAWLQGAALLVIHQLFQ
                     VPIYEEEQTLLR"
     gene            4434..5312
                     /locus_tag="U0280_000615"
     CDS             4434..5312
                     /locus_tag="U0280_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2270572.1"
                     /translation="MVGMTRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWD
                     LVSTIHFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLR
                     PFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAV
                     IITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVT
                     IISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMSWILFIVIF
                     IITIIQNKLQKRWSNY"
     gene            5312..6160
                     /locus_tag="U0280_000616"
     CDS             5312..6160
                     /locus_tag="U0280_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2270573.1"
                     /translation="MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKT
                     GAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVVVAVVTTLGQMLFCSMAAYA
                     FARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGT
                     FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLW
                     PLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMA
                     MSGMKE"
     gene            6188..7444
                     /locus_tag="U0280_000617"
     CDS             6188..7444
                     /locus_tag="U0280_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2270574.1"
                     /translation="MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADG
                     KALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAE
                     KGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA
                     GVEYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTK
                     TTINSPENVAALTHLTNEVTDSKVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMF
                     QDAPFKWDVQVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFASFMSANEEAAKIRID
                     NNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEK
                     VLNGDSTPEKALKNSEDNINKTMGFK"
     gene            7605..10829
                     /locus_tag="U0280_000618"
     CDS             7605..10829
                     /locus_tag="U0280_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009925034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEM2270575.1"
                     /translation="METKPNFTTDSVLETASWLWLSSKINHYDREEVEPVIAFLVENW
                     NRPEKSIWGSAENDIYLATISSVYSALLDVKNTFPKPELQQTITIIRDYCFDNLLKGD
                     SILTGFNTRKVSTDQLLSVLPFGLFSPEDLVMVAAVGKMEQQLVQDDGVLPYSGAPRV
                     NSFATALMALYFLEKSDQDKALHYLNMAMKMEDNDELGAIFIEINQAFRAMESEVTAH
                     ISHDPFGHENRYEQQLTERTPHYPETEMHFSAACEVISEVEPIQVELVLKEKDWTILC
                     EKKEKNDVQIWEALVPPLEEVGEYTYYFRATMKDQTTLTSDDYTVEPIWKHWSEEAAV
                     CETEQGLMVLFKENPSSIIPVEFAAKSDELVIGLKPSFEASNVKTKSSGQLKKDDLEI
                     IVSNNPVRLEVHFKGNLILESHKIYPALQWYTDKAGAINKVKLHLDAPKEEEYYGFGE
                     RYNALGQRGNVLDCFVYNQYRDQGTRTYIPMPFYHTNRDYSVFVDTARYTSFDLGNQL
                     ADKHTITVEINGCDTDICLLMGDIRSAVANYMKKTGKPAMVPVWALGPWMSSNNWDRE
                     SVVRTEVETTQELQIPSTVVVLEQWSDEATYYMFNDAEYDEKAPSEAYNYDEIRFPSW
                     GRWPDPKGMVDYIHDNKMKLILWQIPIQKYLNRQQHPLKDREEAYMIEKGYVVKNPDG
                     SPYRIPENWFTESLIMDFSNEEGKKWWFDKRQYLIDIGVDGFKTDGGEFVFGEGLQFA
                     DGRRGDEMRNLYPNDYVEAYYQFAQQNDGMTFSRAGYTGAQNFPAHWAGDERSTFDAF
                     RRSLIAGLSAGFSGIPFWSFDFAGFNGDIPTAELFIRSAEMATFCPIMQYHAESKAEF
                     NQDRTPWNIASRTGDDSVIPIYRHFANVRMNILPYIYNESLKCVETGLPMMRALLLDY
                     KEDPRVSDMYDQYLFGEAMLIAPVIEDGVRSREVYLPEGTWYDFWNGTKVNGPTLRKC
                     KADKEEIPVFIRGGKAVLCNVDATLKLGSWVGNTVEEYDTPLLKIYVDGDFTEEMTDH
                     LSEKWLVKVTENADEVVVSVQTNTPAYEVEVIGTTKKVQIKKGR"
     gene            10832..13123
                     /locus_tag="U0280_000619"
     CDS             10832..13123
                     /locus_tag="U0280_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEM2270576.1"
                     /translation="MDASTSFAILPSNVKQKTAFERKVNQVKTASWANNCLTGTLDIG
                     QFSCYFVNEKIARVTVNPFGEVDLTPSIAAIHDTEKQAAKFTETTDGYELHFADKEII
                     ICKNPFQIIMKQAGKRIFQTEGLAINRYKEHQISIQSEPGTAIFGLGEKTGALNKAGS
                     IISMWNTDVYSPHNKDTVELYQSIPFMIADTAETTYGLFYDNSHRTEFDFQSFEEMYT
                     ILAEGGQANLYVIFGEDTKEVVANYTDLTGKTPLPPKWSLGYHQSRYSYTSEEEVERI
                     ANTFKEKKIPLDCVFMDIHYMDDFRVFTFNPDTFPNGPELIARLREQNIDVVPIVDPG
                     IKKDVDYSVYQEGIKHNYFCTKLEGSIYYGDVWPGVSAFPDFLSTTVQHWWGGLHKFY
                     TDLGIRGIWNDMNEPSVFNESKTMDLDVVHNLDGKNVTHKEAHNLYGLYMSKATFEGL
                     KRLVPNERPFSLTRAGYAGVQRYSAVWTGDNRSHWEHLEMSLPMIMNLGLSGVAFTGA
                     DVGGFSSDCTKEMLIRWTQAGAFLPYFRNHCVQDSIYQEPWAFGADAEKIVKQYIELR
                     YAFLPYIYTEFQKTAESGLPLVRPLYMEFKDERDLIQVNDQFMLGENILVAPIVREGQ
                     VKRLVRLPRGLWFNYWTKEQFVGGDYIIADAPIDTMPIYIKAGTILPVGSSVQNTKET
                     QDLTLEVYLDGDVASGYVYNDDGKSYHYESGAASKTTLTATFKNGEVLINATHQGEAN
                     LQHKVTTIQVFGEKTDKITRAGI"
     gene            13127..14788
                     /locus_tag="U0280_000620"
     CDS             13127..14788
                     /locus_tag="U0280_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM2270577.1"
                     /translation="MKEKDWWKKSVVYQIYPKSFNDSNGDGVGDIQGIIEKLDYLKEL
                     GVDVIWLSPVYDSPQDDNGYDIRDYQKIYEEYGDMATFDQLLQGLHDREMKLVMDLVV
                     NHTSDEHKWFEESRKSKDNPYRDYYFWREENEINNWGSIFSGPAWELDEKTGEYYLHL
                     FSKKQPDLNWENPKLRQDVYNMMKFWLDKGIDGFRMDVINFISKNTDFPDGPVPDGQI
                     YGDAGNDFCNGPRIHEFLQEMNQEVTSKYDVMTVGEMPGASTTDAQIYTNPANNEVDM
                     IFTFEHMNLDSDGDNKWDLKPIYLPDLKENMSEWQVALQENGWNSLYWNNHDQPRIVS
                     RFGNDNRFRVRSAKMLATCLHMMKGTPYIYQGEEIGMTNVHFETLDDYRDIETLNMYK
                     ERKEQGHSHESIMQSIYTKGRDNARTPYQWDNSENAGFTTGTPWLKVNPRYTEINNEE
                     ALKNPDSIFYYYQNLIKLRKTTEIITTGNYRLLLPKDEAIFAYERYTENEKLVVLCNF
                     TEEEQVISDENILNEIQKGSVLVNNVPNIIEGTLRPYEAIVYQIK"
     gene            14861..15658
                     /locus_tag="U0280_000621"
     CDS             14861..15658
                     /locus_tag="U0280_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM2270578.1"
                     /translation="MILLGGILLLFDTHVHLNDEAFDDDIEEVIKRAQENDVTRMAVV
                     GFNKETIDRALELAEKYDFISLIVGWHPTDAITFTDEDLEWLRDLALTHPKVVALGEM
                     GLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEEVGGI
                     MHCFGETVEVMEACLAMNFYISFGGTVTFKNAKLPKIAAQAIPIDRLLIETDAPYLAP
                     TPNRGKRNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKKLFKIKD"
     gene            15950..17164
                     /locus_tag="U0280_000622"
     CDS             15950..17164
                     /locus_tag="U0280_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="resuscitation-promoting factor"
                     /protein_id="HEM2270579.1"
                     /translation="MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDIT
                     IVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITI
                     NDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQ
                     NGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKK
                     NEQVKFETVYKEDDSLNKGVEKVVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSK
                     KTDKVVVRGTKEKVVATPVSNVSTPSTTSSSSSTPSGGKTYRMESTAYSGGGTTAYGI
                     NLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQCYS
                     WGRRMVTVKVLN"
     gene            17266..17841
                     /gene="rnmV"
                     /locus_tag="U0280_000623"
     CDS             17266..17841
                     /gene="rnmV"
                     /locus_tag="U0280_000623"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HEM2270580.1"
                     /translation="MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIE
                     KIRHAQELRGVIIFTDPDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHA
                     SSANIREALENFHTSGTPAEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNG
                     KQLQTRLESFAISEDQLVAACQKIMQEEENE"
     gene            17834..18721
                     /gene="rsmA"
                     /locus_tag="U0280_000624"
     CDS             17834..18721
                     /gene="rsmA"
                     /locus_tag="U0280_000624"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEM2270581.1"
                     /translation="MSKDIATPGRTTEILKKYGFLFKKSLGQNFLIDSNILTRITDTA
                     EITKETNVIEIGPGIGALTEQLAKTANEVVAFEIDQRLLPILDDTLSAYNNIQVVHGD
                     VLKADVEEVIAEQFAKPDLPLKIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVA
                     DRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAE
                     VNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDDLVEGLNAIGIDLIRRGETL
                     DIPEFAKLSNFLGDFLKGK"
     gene            18841..19098
                     /locus_tag="U0280_000625"
     CDS             18841..19098
                     /locus_tag="U0280_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Veg family protein"
                     /protein_id="HEM2270582.1"
                     /translation="MPKTIASIKTNLDSRLGKALTLKANGGRKKTIERCGILAETYPS
                     VFIVELDQDENNFERVSYSYTDILTDAVELVFTDDNKELAL"
     gene            19237..20118
                     /locus_tag="U0280_000626"
     CDS             19237..20118
                     /locus_tag="U0280_000626"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEM2270583.1"
                     /translation="MKISITAPAKINLSLDALYKREDGYHEVEMVMTTIDLADRLYLE
                     RLDEDKIVLDVKAHFIPEDRRNLIYQAALLLKKRFDVKMGVRITIDKHIPVSAGLAGG
                     SSDAAAALKGLNVIWELGLSIEELAEISSEIGSDIAFCVYGGTALATGRGEKISALPN
                     IPGCWIVLAKPSISVSTPTIYKELQVDNVEHPDTQKMIESIKNGDLDGIFASTGNVLE
                     SVTLEKNPQVKRIKDRMLAFGAEAALMSGSGPTVFALIKQYSRAKRVYNGLRGFCEEV
                     YMVRPWSEGENDTNINN"
     gene            20140..20877
                     /gene="chbG"
                     /locus_tag="U0280_000627"
     CDS             20140..20877
                     /gene="chbG"
                     /locus_tag="U0280_000627"
                     /EC_number="3.5.1.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin disaccharide deacetylase"
                     /protein_id="HEM2270584.1"
                     /translation="MKIIFNADDFGISPGAVYGILESYKRGVVKSTTLLANSPAFDLA
                     VEVAKENPGLDIGAHLTLTFGSPVLQGLETLTDDDGRFRRNYTSLENGLADVDMNEVE
                     RELTAQIEKILDAGITISHFDTHHSIEPLIYPVQHKLAEKYGVSIRRHSDVSDFGAIK
                     TPDLFATEFYADGVSFETIKKLVQKHIGTNDVVEVMTHPAFIDETLREISSYVEPRIK
                     EVSILTSRELQAYLGQQEVEIISFRDL"
     gene            21041..21859
                     /gene="purR"
                     /locus_tag="U0280_000628"
     CDS             21041..21859
                     /gene="purR"
                     /locus_tag="U0280_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HEM2270585.1"
                     /translation="MKIRRSERLIDMTQFLLSHPRKLVPLTMFAERYGSAKSSISEDL
                     VIIKKTFEDRGIGTLETVPGAAGGVQYISIAGNDDVLDFVHTLCNRIAEPNRLLPGGY
                     LYLSDLLGEPVTLKAIGKILATKFNNQKIDAIMTVATKGIPIAQAVAEHLSVPFVIVR
                     RDSKVTEGSTVSINYVSGSSKRIEKMELSKRSLAEGSNVVIVDDFMKAGGTINGMKNL
                     LEEFNAHLVGIGVLVESEYAEERLVDDYVSLVKIKNVNMKEKQIEVVDGNYFNS"
     gene            22034..22711
                     /locus_tag="U0280_000629"
     CDS             22034..22711
                     /locus_tag="U0280_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEM2270586.1"
                     /translation="MKKWVKWLIVIVIIAVVAVGAVFLLSKNSGSVTQEKLVTAKVKQ
                     GDMKINATGTGAISPVNTQVPDYDELQLVAQMDELDIPNIKKDQEVKVTVTALPDKTY
                     TGKVKEIAEQGQVQNGVSSFSVIISLDKTDDLKAGMTADASILVNEKKDALYVPIEAV
                     QKDSDDKYYVLVPEEKDNGKTKKVKKFVETGLHNEDNIEITKGVKKGEKVILPTQETS
                     TVPGAPS"
     gene            22760..23452
                     /locus_tag="U0280_000630"
     CDS             22760..23452
                     /locus_tag="U0280_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270587.1"
                     /translation="MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPS
                     GSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKL
                     SAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARAL
                     AGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQ
                     DGKLFHEEATQA"
     gene            23449..24657
                     /locus_tag="U0280_000631"
     CDS             23449..24657
                     /locus_tag="U0280_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270588.1"
                     /translation="MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNG
                     VTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNAT
                     FDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGD
                     PIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETK
                     SAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTL
                     TTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVI
                     SVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASK
                     LRPIDALRSE"
BASE COUNT         8374 a         4289 c         5256 g         6972 t
ORIGIN      
        1 tttactcaga aaacctctac catcttcttg ttatttcagc tataatgaag taattgaaaa
       61 ctaaattaaa ggattaacaa ggaggaaaac gatttgaaca ttatgattgc gctgattcct
      121 gcattactct ggggaacagt accgctaatt attacaaaat ttggcggttc aacaagacaa
      181 caaacgatgg gaatgacact aggggcactc acttttgcgg taatcgtttt cttctttact
      241 gacccagttt atacgcttaa aacagtagga attagtttta taacagggtg tttatggact
      301 gtgggtcaaa tgttccaact gcaagcattc aaaattatcg gtgtttcaaa agcaatgccg
      361 atttctacag ggatgcaatt agtcggaaca acactttgtg gggtaatctt atttcatgaa
      421 tgggatacga cacttcggat tattttaggt tttattgcac ttgcactaat tgttggcggg
      481 attttcttaa catcctatgc tgaaaaagaa gaagatggaa ctaacgcatt aaaacaaggt
      541 ttaatcacat tattcatatc tgcttgtggt tatgttggct tagtcgttct aattcaaggt
      601 ttcaaaatcg atggaattaa cgcaatcttg ccgcaagcga ttgggatggt tttaagtgcg
      661 ctaattatga cgcatagcgg tggtacggaa aaacgtttca ataaacgaac actcttactt
      721 actattccag ggataatctg ggcggctggg aacgttgcga tggttcacgc taaccaactt
      781 gttggcgttg cgactggttt ttcactttcg caactcggag ttgttatctc aactattggc
      841 ggaatcgtac ttttaaaaga aaagaaaaca caaaaagaaa tgttttttgt tattgtgggc
      901 gtagttttag tcgttctcgg cgggatttta atcggcgttg caaaaggtgc ttaattaatt
      961 atttcgttta gcgcgaaaaa tgatataatg atactaattg ttttattttt aaggagggaa
     1021 ttgtgttgcc tgaagagaaa aatacgtttt atattaccac accaatctat tatccaagcg
     1081 gaaaagcgca tatcggccat gcttatacga ctgttgcggg ggacgcgatg gctcgttata
     1141 aacgcttaaa aggatatgat gtgttttact taactggaac agatgagcac ggtcaaaaaa
     1201 tccaagcaaa agcgaaagaa cgcggaattt ctgaacaaga atacgtggat gaaatcgcag
     1261 aaggtttcca agaactttgg aaaaaactag aaatttctaa tacggatttt attcgtacaa
     1321 cacaagaccg tcataaaaca tcggttgaaa aaatctttga acaactttta gaacaaggcg
     1381 acatttactt aggtgaatac gaaggttggt actctgtttc tgatgaagaa tactttacag
     1441 aaacacagtt agaagaagta tataaagatg aaaatggtaa agtaatcggc ggaaaagccc
     1501 caagtggcaa tgaagtcgaa ctagtgaaag aagaatccta cttcttccgt atgagcaaat
     1561 atgcggaccg tttagtagaa tattataatt cccatccaga atttatcctt cctgaatcta
     1621 gaaaaaatga aatgattaat aatttcatca aacctggttt ggaagattta gctgtatcta
     1681 gaacaacttt tgattggggt attaaagttc ctggcaatcc aaaacacgtt gtttatgtat
     1741 ggattgacgc gctttctaac tatattactg cgcttgggta taatacggac aatgacacga
     1801 aattccaaaa atactggcct gctgatgtac aaatcgttgg gaaagaaatc gttcgtttcc
     1861 acacgattta ttggccaatt atgctgatgg cactagactt accacttcca aaaatggtgt
     1921 tcggccacgg ctggattcta atgaaagatg gtaaaatgtc taaatccaaa gggaatgtag
     1981 tagatcctta tatgctgatt gaccgctacg gcctagatgc gcttcgttat tacttattac
     2041 gcgaagttcc atttggttca gatggtttat ttacaccgga agactttgtt gatcgtgtga
     2101 actttgatct tgccaacgat ttaggaaact tacttaatcg tacagtagca atgattaata
     2161 agtactttga tggcgaaatt ccggcttatc aaggcaatgt aacagaattc gatcaaacct
     2221 tagtggattt caaaaacaat gtggtgaagg aatatgaagg tagcatggat cacatgcaat
     2281 tctctgtagc tttaaaccaa ctgtggtcac taatttctcg tacaaataaa tatatcgatg
     2341 aaaccgctcc atggacactt gccaaagacg aagataaacg cacagaactt gcgagcgtaa
     2401 tgactcattt agcagaaaac ttacgtatta tcgcagtgct tttgcaacca ttcttaacaa
     2461 gaactccagg cgaaatcttc ttacaactag gtttacaaga agaaaacttg aaaaaatggg
     2521 atagcatcta tggatacggt gaaattccag ctggcacaac agtggtgaaa aaaggtacgc
     2581 caattttccc aagacttgag gcagaagtag aagttactta tatccaagat gaaatgaaag
     2641 gctctgcgcc agctcctgcc aaagaagcgg cggaagttga agcgcttgaa acaccgcaaa
     2701 tcggcattga agatttcgat aaaatcgatc ttcgtgttgc agaagtaaaa caagtagata
     2761 aagtgaaaaa agcagataaa cttctttgtt tccaattaga cttaggggaa ggaaaactgc
     2821 gccaagtgct ttcaggcatt gcagaattct atcaaccaga agaactaatc ggcaaaaaag
     2881 ttatcgtcgt ttctaactta aaacctgtaa aacttcgcgg actaatgagt gaaggaatga
     2941 tactctcagg cgaaaaagat ggtaagctaa gtgtaatcga agcaagtagc gcacttccaa
     3001 atggtgcaaa agtaaaatag taaaaacgag tcctaattca tttgagttag ggctcctttt
     3061 tttcgcctaa aaaaactttt aaaaaaagat tgcatattgc aaacgattac aatataatgt
     3121 aactatactt acttaattca ttgaacgaag taagtggtcg gacagaagta aaggagcttg
     3181 aaaatggata tcttaagaaa agggaataaa gacttaatta aagacataaa ccgctacacc
     3241 gtgctgaatt taatccgtga aaaaggagaa atcacgcgga ctgagatagc caaaaaatgc
     3301 gattttggga tgtctacatt aacgtatatt ttagatgatt tacagcaaga aggcattatt
     3361 ttggaaggtg ccgaaacatc atctactgga ggcagacgtg ccaagttagt tagatttaat
     3421 aaagattatg gatttgttgt tagtgtcaaa gttgaagagg aacaacttct ttttgcgttg
     3481 accgatttaa atgcagaaat catggaaaat acttctatac cattttcctc agagaaaaaa
     3541 ccagaagaag cgattgagtt aattgctaaa aatgtgaaaa agatgtgtga aaacagagat
     3601 atgaaccatt tgctaggagt tggaattgcg atttccggcc tagttaatcg tagaaaagga
     3661 acagttatcc gctctactat gttagggtgg gaaaatgtcg ctttagaagc aatgctacat
     3721 gcttacttcc cagatattcc agtgtacgta gataaaaata taaactgcta cacactcgcg
     3781 gaactatggt taggtgaagg aaaacaatca aataattttg caacagtttc cgttggagct
     3841 ggacttggtt tatccgttgt tattaatcgt caaatttatt atggtgcaca gggtggagcc
     3901 ggtgaatttg gacatacaac gattcaaccg ggcggataca aatgtcactg tggtcaaaaa
     3961 ggatgcttag aaatgtacgc atccgaattt tatttccgaa atcgtggcga agaattaaaa
     4021 gaagcttatc caacatcaga attaaaggat tttcattttg ataaagtagc aaaaagtgct
     4081 cgagctggag acgaaatggc gacggaactt atgggtaaaa tgggtgaata tttaggatac
     4141 gggattcgaa atatcattaa taccttcaat ccagaaaaag ttatcattgt cggtgaaggt
     4201 ttgcaccata gagacttatt cttaactaaa attgatgaaa ttgcttcaca aaactttttt
     4261 tcaggggctg gctttgaaac ggaaattact acaacttctt tagaggatcc tgcatggtta
     4321 caaggtgcgg ctttactagt cattcaccaa ttattccaag tgccaatcta tgaagaagaa
     4381 caaacgttac tacgttaaaa agaacataaa ctatttcagg aggttatttt tacatggttg
     4441 gtatgactag aaagaaaaca ctcttttggc tatgcatatt cttgctaccc aatttactag
     4501 gttttctcat ttttattgca atcccaatcc ttggctcgct tggtattagt tttaccgatt
     4561 gggacttagt gagtactatt cactttactg gatttgaaaa ttacaaaagg ctatttaatg
     4621 acccagagtt ttggaaatcg tttagaaata caatcacgtt catcatcggt tatttgccta
     4681 gtgtaatgat tcttggccta gcgtgtgcct tgatgttgaa ccaaaaaatc aaactaagac
     4741 catttttccg agcagtgtac ttcttacccg taatcacttc atgggtagct gtttcactcg
     4801 tttggaaatg gctgttcaat ccttcatacg gtttgatcaa ttacttctta tctttaattg
     4861 gtattgcagg gcccaactgg ttaacagatc cacaaacggc gatgattgca gttattatta
     4921 ctagtgcgtg gaaagatatt ggtttcgtta tggtactatt ccttggtgga ttgcaaaata
     4981 tttcaccatc gtattacgaa gctgccaata tggacggagc atcaaaactt cgccaattat
     5041 tctctattac tatcccgctt cttactccta ctacattctt tgtgacgata atttcgctta
     5101 tcaactcatt ccaggtgttt gaccaagtga tgattatgac agaaggtggt ccaagtggag
     5161 cgacaatgac cctagtccaa aatatttaca accatgcatt tagatacttc gaaatgggct
     5221 atgcttccgc gatgagttgg atattgttta ttgttatttt catcattaca attattcaaa
     5281 ataaacttca aaaaaggtgg tccaattact aatgaaaaca gaaaaaagtg gttcaccaaa
     5341 atggcaacta tttaaaaata ttcttaccta tacaatcatc tgtcttggtg gaattatcat
     5401 gcttatgccg tttgtttgga tggtatcaac tgcattcaaa acaggcgcag cgaacatggt
     5461 attaccgccg caatttattc ctaaagaacc gacaactgcg aacttcactc aagtatttga
     5521 aatgttccca atgttgcgat ttttagttaa ctccgtggtc gttgcagttg taacgacact
     5581 tggtcaaatg ctgttttgtt caatggcagc gtatgctttt gccagaattc ctttctgggg
     5641 tcgcgataaa ttatttttac tttacttagc aacaatgatg gtgccagctc aagttacaat
     5701 gattccgcag tttatcttga tgaaacaatt tggctggttg gattcgtatg ctggtttgat
     5761 tgtacccgca ctattcagcg tttttgggac attcttatta cgtcaagcat tcatgggaat
     5821 tccgaaagag ctagaagaag ctgcattcat ggacggtgcc aatcatttta ctattttccg
     5881 aaaagttatc ttaccacttg caaaacctac ttttgcgaca ctcggaattt taacttttat
     5941 gcaatcttgg aacagttatt tatggccatt aatcgtgaca agttcacaag aaatggcaac
     6001 tttaccttta ggattatctc ttttacaagg tagatatgga acgaattatg gcttaatgat
     6061 ggcgggtgta ctaattagtg ttatcccgat tctagcagtg tacctttttg ctcaaaaata
     6121 tttcatccaa ggaatggcaa tgagcggaat gaaagaataa aaaaccaaca aaaaaggagt
     6181 gttacaaatg aaaaaaggtt tattattgtt aatggtagtt gtactgtctg tatttggtct
     6241 ttcggcttgc ggcggtggca gtagtagtgg cgataaaaca gaaataacgt attatcaatt
     6301 ctctgcacca gctgatggaa aagcacttga tgaaatggta aaagaatttg aaaagcaaaa
     6361 cccggatatt aaagtaaacg ttcaaacaat cgcatttaac gactatttca ctaaactaca
     6421 aacacaaatc gcaggtggag atgctccgga tgcctttgaa cttaactacg aaacattcat
     6481 gcaatatgct gaaaaaggtg tacttgcaga tttaacaagc tatatcgaaa aagataaaga
     6541 ttttgatcca tctacactta acaaacaagc ctacgatgct ttcaaatatg atggcaaaca
     6601 atacggtatg gtagaaagtt tctccaacgt tgtaacaatt tacaataaag acctttttga
     6661 taaagccggc gttgaatatc cgacagctga ctggacttgg aaagacgaag aagcggcagc
     6721 aaaaaaatta acagatgcta aaaataaagt ttggggaact tcccaaccag taacaatgaa
     6781 cgaattctac aaagtagcag cgcaaaatgg tggttcgatt ttcaacgaag acttaacgaa
     6841 aacaactatc aacagtcctg aaaatgtggc agcattaact cacttaacaa atgaagtaac
     6901 agattcaaaa gtggcgcctt caccagctga tttatctggc caattaccag aagatttatt
     6961 tatgaatggt caaatcgcaa tgcttcacac cggtatttgg ttgttcgata tgttccaaga
     7021 tgctccgttc aaatgggatg tacaagtaga agcaggaaac acgcaaaaag caactcactt
     7081 cttcgcaaac ggcattggtg tttctaaaga ctccgataaa aaagaagcag ctttcaaatt
     7141 cgcttccttc atgagcgcga acgaagaagc agcgaaaatc agaattgata ataactggga
     7201 acttccagcg actgaaaaca aagagatttt acaaccatat ttagatgcaa ctcctccaga
     7261 taacagagaa gcagtattcg aatctctaca atatatggta ttacctccag ttgtaaaaga
     7321 ttggaacaaa atcagtgatt atacaaactc tgaattcgaa aaagtattaa atggcgattc
     7381 tactccagaa aaagcactga aaaacagcga agacaacatc aacaaaacaa tgggatttaa
     7441 ataagtaaaa cgagtggcag ggacgtttgt aagtatcttt acaaattaga ctgccacttt
     7501 agtatatcca agaaaggaaa tagaacatgt ctaaattcac aaaattaatg cagggttact
     7561 tgcatttaat agaaggaaaa aacgaaaaaa tcaaaccaat cctgctggaa acaaaaccta
     7621 actttacaac tgattcagtc cttgaaaccg cttcttggct atggcttagc agtaaaatca
     7681 atcattatga tagagaagaa gtagagccag taattgcatt tttagttgaa aactggaatc
     7741 gtcctgaaaa gtctatttgg ggttcagctg aaaatgatat ttatttagca actatttcaa
     7801 gtgtatactc tgcattatta gatgtgaaaa acacttttcc aaaaccggag ttacaacaaa
     7861 cgattacaat tatccgcgac tattgttttg ataatttatt aaaaggcgat agcattctta
     7921 ctggttttaa cacgcggaaa gtgtcaaccg accagctttt atccgtgctt ccgtttggtc
     7981 tattttcgcc tgaagatctt gtaatggtgg cggctgttgg caaaatggaa caacaattag
     8041 tgcaagatga tggggtattg ccttattcag gagcaccaag agttaattcc tttgcaacgg
     8101 ctctaatggc gctatatttc ttagaaaaaa gtgaccaaga taaagcttta cactatttga
     8161 atatggcaat gaagatggaa gataatgacg aacttggcgc gatttttatt gaaattaacc
     8221 aagcattccg ggcgatggaa agtgaagtga cagcgcatat ttcacacgat ccttttgggc
     8281 atgaaaatcg ctatgagcaa cagttaactg aacgcacgcc acattatccc gaaacagaaa
     8341 tgcatttttc ggctgcgtgt gaagttattt ctgaagtcga accaatccaa gtcgaactcg
     8401 tcttaaaaga gaaagactgg accattctat gtgagaagaa agaaaaaaat gatgtccaaa
     8461 tctgggaagc gctcgttcca ccgttagaag aagttggcga gtatacgtat tatttccggg
     8521 caacaatgaa agaccaaacc actttgacat cagatgatta tacagtcgaa ccaatttgga
     8581 aacactggtc agaggaagcg gcagtttgtg aaacagagca aggcttaatg gttttattta
     8641 aagaaaatcc atcaagtatc atcccggtcg agttcgccgc gaaatcagat gaacttgtaa
     8701 tcggattaaa accttcattt gaagcgagca atgttaaaac aaaatcatcc ggccaattga
     8761 aaaaagatga tttagagatt atcgtttcaa acaatccagt gcgtctcgaa gtacatttta
     8821 aaggcaactt aattctagaa tcgcataaaa tttacccagc gttacagtgg tatacagata
     8881 aggctggcgc aatcaacaaa gtgaaactgc atttagatgc cccgaaagaa gaagagtatt
     8941 acggcttcgg tgaacgatac aatgcattag gtcagcgcgg gaatgtgctt gattgttttg
     9001 tttataatca ataccgtgat caaggaacaa gaacctacat cccgatgccg ttttatcata
     9061 cgaatcgtga ttatagtgtg ttcgttgata ccgctcgtta cacaagtttt gatttaggta
     9121 accaactagc ggacaagcat acaattacag tagaaataaa tggctgtgac acagatattt
     9181 gtcttttaat gggagatatt cgtagtgcag tagcaaatta tatgaagaaa actgggaaac
     9241 cggcgatggt gccagtttgg gcgcttgggc cgtggatgtc tagtaacaac tgggaccgtg
     9301 aatctgtcgt tcgaacagaa gtggaaacaa cgcaagaatt gcaaatccca tcaaccgttg
     9361 tcgtgttaga acaatggagc gatgaagcga cttattatat gttcaatgac gccgaatatg
     9421 acgaaaaagc cccatctgaa gcatataatt acgatgaaat tagattccct tcatggggta
     9481 gatggccaga tccaaaaggg atggttgact atatccatga caacaaaatg aagttaattc
     9541 tttggcaaat tccgattcaa aaatacttaa atcgccaaca acacccacta aaagaccgcg
     9601 aagaagccta tatgattgaa aaaggctatg tggtgaaaaa tccggatggc tcgccatacc
     9661 gtattccaga aaattggttc acagaaagct tgattatgga tttctccaat gaagaaggaa
     9721 aaaaatggtg gtttgacaaa cgacaatact tgattgatat tggggtcgat ggctttaaaa
     9781 cagacggcgg cgaattcgtc tttggtgaag gtttgcaatt tgctgatggt agacgtggtg
     9841 atgaaatgcg taatctttat ccaaatgact atgtggaagc ttactaccaa tttgcacaac
     9901 aaaatgatgg catgacattt agtcgtgctg gctacactgg cgcgcaaaac ttcccggcgc
     9961 actgggctgg agacgaacgt tccacttttg atgcatttag aagatcgctc attgctggac
    10021 tttccgctgg attttcggga attccgtttt ggagttttga ctttgcaggt tttaacggcg
    10081 atattccgac ggctgagcta ttcattcgtt ctgctgaaat ggctactttc tgcccgatta
    10141 tgcagtatca tgctgaaagt aaagcggaat ttaatcaaga ccggacaccg tggaacattg
    10201 cttcacggac tggtgacgac tcggtcatcc ctatttaccg ccattttgcg aatgttagaa
    10261 tgaatatttt accttatatt tataatgaat cattaaaatg tgttgaaact ggcttgccaa
    10321 tgatgcgtgc gcttctgctg gactataaag aagatccgcg tgtttctgat atgtatgacc
    10381 aatacttatt cggagaagca atgctgatcg caccagtaat tgaagacggc gtgcgctcca
    10441 gagaagttta tctgccagaa ggaacttggt atgatttctg gaatggaaca aaagtgaacg
    10501 gaccaacttt acgaaaatgc aaagcggata aagaagaaat tccagttttc attcgtggtg
    10561 gaaaagcagt gctatgtaat gtggacgcta cattgaaact cggctcatgg gttggcaaca
    10621 cagtggaaga atacgataca ccactactta aaatttatgt ggacggtgat ttcacagaag
    10681 aaatgacgga tcacttatcc gaaaaatggc tagtaaaagt aacggaaaat gcggacgaag
    10741 tagttgtttc tgttcaaaca aacacaccgg catatgaagt tgaagtaatc ggcacgacca
    10801 aaaaagtaca aataaagaaa gggagataat gatggatgct tccacaagtt ttgcgattct
    10861 accatctaat gtaaaacaaa aaacagcttt cgaaagaaaa gtaaatcaag tgaaaacggc
    10921 tagttgggcg aataattgcc tgactggcac acttgatatc ggtcagttca gttgctattt
    10981 tgttaatgaa aaaattgctc gcgtgacggt gaacccattt ggagaagtgg atttaacgcc
    11041 ttcgattgct gcgattcacg atacggaaaa acaagcggct aaatttacag aaacaacgga
    11101 cggctatgag cttcattttg cggataaaga gattattatt tgtaaaaatc ctttccaaat
    11161 tattatgaaa caagctggga agcgtatttt ccaaacagaa ggattggcaa ttaatcgcta
    11221 taaagaacac caaatttcga ttcaaagcga accaggaacc gcgatttttg gtttaggtga
    11281 aaaaacgggt gccttgaata aagccggttc cattattagt atgtggaaca cggatgtata
    11341 cagtccacat aataaagata cagtggagtt ataccagtcc attcctttca tgattgcgga
    11401 tactgcggaa acaacctatg gcttatttta tgataattcg catcgtacag aatttgattt
    11461 ccaaagtttt gaagaaatgt atacgatttt agcagaaggt ggacaagcga atttatatgt
    11521 tatttttggt gaggacacga aagaagttgt cgcgaattac actgatttaa ctggtaaaac
    11581 accacttcca ccaaaatggt cattaggtta tcatcaatca aggtatagct acacctcgga
    11641 agaagaagtg gaacggattg cgaatacttt taaagaaaaa aagattccgc ttgactgtgt
    11701 attcatggat atacattaca tggatgattt ccgcgtattc acttttaacc cggatacttt
    11761 tccaaatgga ccagaattga ttgcgcgtct tcgggaacaa aatattgacg ttgtaccaat
    11821 tgtcgatccg ggaattaaaa aagatgttga ttattctgtt tatcaagagg ggatcaaaca
    11881 taattatttc tgcactaaat tagaaggttc gatttattat ggggatgttt ggccgggtgt
    11941 cagtgctttc cctgattttc taagtacaac tgttcaacat tggtggggcg gtttacacaa
    12001 attttacaca gatttaggta tacgcgggat ttggaatgat atgaatgagc cgtctgtatt
    12061 caatgaaagt aaaacgatgg atttagatgt tgtgcataat ctggacggga aaaatgtaac
    12121 ccataaagaa gcgcataatt tatatggatt gtatatgagt aaagctactt ttgaagggtt
    12181 aaaacggctt gtgccaaatg aacgtccatt ttcactcact cgtgctggtt atgcgggtgt
    12241 tcagcgttat tcggcggttt ggacaggaga taatcgtagt cactgggagc atttggagat
    12301 gtcgctgccg atgattatga atttaggatt atcgggcgtt gcgtttaccg gtgctgatgt
    12361 tggtggattt tcttcagatt gtacgaaaga aatgttgatt cgttggacgc aagctggggc
    12421 ttttttacca tatttcagaa atcactgtgt acaagatagt atttatcaag agccatgggc
    12481 gtttggcgcg gatgcagaga aaattgtgaa acaatatatt gaattgcgct atgccttttt
    12541 accgtatatt tatacagaat tccaaaaaac ggcagagagt ggtttaccgc tcgttcggcc
    12601 gctttatatg gagtttaaag atgaacgcga tttaattcaa gtgaatgatc aatttatgct
    12661 aggtgaaaat atcctcgttg cgccaatcgt tcgtgaaggc caagtgaagc gtctagttcg
    12721 tttgccaaga gggctttggt ttaattattg gacaaaagag cagttcgtgg gcggcgacta
    12781 tattatcgca gacgcgccga ttgataccat gccaatttac attaaagcgg ggacaattct
    12841 gccagttggt agcagcgttc aaaatacaaa agagacgcaa gatttgacat tagaagttta
    12901 cttagatggc gacgtagcaa gcggttatgt gtataatgat gatggtaaaa gttaccatta
    12961 tgaaagcggc gcagcatcca aaacaacact cacagctact ttcaaaaatg gcgaagtact
    13021 aataaatgct acccatcaag gtgaagcaaa cttacaacat aaagtaacta ctatacaagt
    13081 ttttggagaa aaaacagaca aaattacaag ggcgggaatt taatctatga aagaaaaaga
    13141 ttggtggaaa aaaagcgtag tgtaccaaat ctatccaaag agttttaatg attcaaatgg
    13201 tgatggagtt ggtgatattc aaggaattat cgagaaatta gattatttaa aagagctagg
    13261 tgtggacgtt atctggttgt ccccagtata cgattcgcct caagatgaca atggttacga
    13321 tattcgcgat tatcaaaaaa tttacgaaga gtatggagat atggcgactt ttgatcaatt
    13381 acttcaaggt ttacacgacc gcgaaatgaa acttgtaatg gatcttgttg ttaaccatac
    13441 ttctgatgaa cacaagtggt ttgaggaatc cagaaaatcc aaagacaacc cgtacagaga
    13501 ttactatttc tggcgcgagg aaaacgaaat caataactgg ggctcgattt tcagcggtcc
    13561 agcatgggaa ttggacgaaa aaacaggtga gtactattta cacctgttct ccaaaaaaca
    13621 gcctgattta aactgggaaa accctaaatt acgccaagat gtatataata tgatgaaatt
    13681 ctggctagat aaaggcattg atggcttccg catggatgta attaatttta tttccaaaaa
    13741 tactgatttc ccagatggtc cagtaccaga tggtcaaatt tatggcgatg ctggcaatga
    13801 tttttgtaat ggaccgcgga ttcatgagtt cttgcaagaa atgaaccaag aagttacttc
    13861 taaatacgat gtgatgactg ttggcgaaat gcctggtgct agtacaaccg acgcgcaaat
    13921 ttacacgaat ccagcaaata atgaagttga tatgattttt acatttgaac atatgaactt
    13981 agattccgat ggcgacaata aatgggatct aaaaccaatc tacttaccag atttaaaaga
    14041 aaatatgtct gaatggcaag tggcgcttca agaaaacggt tggaatagct tatattggaa
    14101 taatcatgac caaccgcgta tcgtttctcg ttttgggaat gacaatcgtt tccgcgttcg
    14161 ttcagcgaaa atgcttgcaa cttgtttgca tatgatgaaa ggaacgccat atatttatca
    14221 aggtgaagaa attgggatga cgaatgttca ttttgaaacg ctagatgatt accgtgatat
    14281 cgaaacgcta aacatgtaca aagagcgtaa ggagcaagga cacagccatg aaagcatcat
    14341 gcagtcgatt tacacaaaag gccgtgacaa tgcgagaacg ccgtaccagt gggataatag
    14401 cgagaatgct ggcttcacaa ccggaacgcc ttggcttaaa gtcaacccgc gctatacaga
    14461 aatcaacaac gaagaagcgc tgaaaaaccc agattccatt ttctactact accaaaatct
    14521 tattaagtta cgaaaaacga ctgaaatcat cacaactggt aattatcgtt tgttattacc
    14581 taaagatgaa gcgattttcg catatgaacg ctacacagaa aatgaaaaat tagtggtttt
    14641 atgtaatttc acagaagaag aacaagttat ttctgatgaa aacattttga acgaaatcca
    14701 aaaaggttcc gtgcttgtaa acaatgttcc taatattata gaaggaactt tacgacctta
    14761 cgaagcaatc gtttatcaaa tcaagtaaat ctcaggaaag ccaccaattg ttaggtggct
    14821 ttttttgtat gcgtcaaaaa ttatagtata atagaaggaa atgattttat taggaggaat
    14881 tctcttgcta tttgatacgc atgtacacct caatgacgag gcttttgatg atgatataga
    14941 agaagtaata aaacgcgcac aggaaaacga tgtgactcgc atggccgtgg tgggctttaa
    15001 taaagaaaca attgaccgag cgcttgaatt agccgagaaa tatgatttta tctcattaat
    15061 cgtcggctgg catcccacag acgctattac cttcacagat gaagatttag aatggctccg
    15121 cgatttagca cttacacacc cgaaagtagt tgctttaggc gaaatgggct tagattatca
    15181 ctgggatact tcgccaaaag aaacgcaatt tgaggttttt agaaaacaaa tccgtttagc
    15241 gaaagaagtg aatttaccga tagttattca caaccgcgaa gcaacagaag atgttgttcg
    15301 tattttgcaa gaagagcacg ctgaagaagt aggtggaatt atgcattgct ttggtgaaac
    15361 tgtcgaagta atggaagcat gtctagcgat gaatttttac atttcattcg gaggaacagt
    15421 cacttttaaa aacgcaaaat taccaaaaat tgcagctcaa gctataccaa ttgaccgttt
    15481 attaattgaa actgacgcgc cgtatctcgc tccaacccca aatcgcggaa aaagaaatga
    15541 acccggatac gtcaagttag ttgccgaaaa aattgcagaa ctgaaagaaa tgaaatatag
    15601 tgaaatcgct acgcactcaa cagaaaacgc aaaaaaacta tttaaaataa aagattgatt
    15661 gtaacacaat tgtaatataa gggccagtct gtaacccaat cttaagcttc acggagataa
    15721 aaatgatgac tgggacaaaa acccttattt tatgcctacg accagagatg tagaaaaatg
    15781 acacatttct gttacatttg acactttaaa agaataatat ttttaaaaac ggctctatat
    15841 caacgttttt tgttaaagtt tgcgaaggtg tgaacaatct gtataaaaaa ttgacagttc
    15901 ttccctcccc tgtatataat cactagcgaa gtagaaaggg gagaaataca tgaccatgga
    15961 aaacagcagt aacgtagccc aatcatcaaa atggaaatta ccaatcatga ttgcaggatt
    16021 tgttattgta gtagcattgg ttttttattt cgttttcgaa ggaactaaaa acgatatcac
    16081 tatagtaaat gctggtgaaa aaattgaatc aagaacacat gcgaaaactg tttcagaagc
    16141 attagacgaa gcaggtatta aagtaagtga acgcgatgaa attgcgccag gcaaaaatgc
    16201 agaaatcaaa gacggcatgg aaattaaata tttgccagct cgtcaaatta caataaatga
    16261 taatggtact aaaaaagacg tttggagcac aaaagcaaac gtagcagact tgcttaaaga
    16321 tgaaaatatt acaactcgtc cgcaagatgt attaaacgta gcattagata ctaaattgaa
    16381 aaatggcctt gaagttaaca ttaatcgtgc cattcaactt tccttacaaa acggagcaaa
    16441 aaaagataca gtatggacaa caaaaacaaa agttagtgat ttactagctg agaaaaatat
    16501 taaacttgat caagatgacc gtgtgtcacc tgcaaaagac agtaacttaa aagaaaaaat
    16561 gactgtagaa gttacatatg tcaattcaaa agcagaaaag aaaaatgaac aagttaaatt
    16621 cgaaacagta tataaagaag atgatagcct aaacaaaggc gttgaaaaag tcgttcaaga
    16681 aggtaaaaac ggcgaaaaag ttgttgagta taaagtaaca tttgaaaatg gcaaagagaa
    16741 aaaacgtgat gtcattaaag aaaatgtcac ttctaaaaaa actgataaag tagttgtacg
    16801 tggcacgaaa gaaaaagtgg tagcaacacc agtttctaac gtatctactc caagtacaac
    16861 gtcatcatca tcatcaactc catcaggtgg taaaacatac agaatggaat ctactgcata
    16921 ttcaggtggc ggtactacag cttatggtat caacctaagt gccaaccctg gactaaaagt
    16981 aattgcggtt gatccacgaa ttattccact tggctctaaa gtttgggttg agggatacgg
    17041 agaagcaatc gctggagata ctggcggcgc tatcaaagga aatatcgttg acgtgtattt
    17101 cccaaatgaa agtcagtgct attcatgggg gagaagaatg gtgactgtca aagtgttaaa
    17161 ctaaattcgt ataaaaacga ggctgactca tagggcctcg ttttttcttt gtccaaaatg
    17221 tggtatgata tatttactta ttttataaaa aaggatgtag taattatgaa cgggaagcct
    17281 gtaatacatg aatttatagt cgtagaagga cgggacgata caacggcaat taatcgttca
    17341 gttattgctg ataccattga gactaatgga tctgcccttt cacaagaaac aatagaaaag
    17401 attagacatg cacaagaact tcgcggcgtt attattttta cagatccaga ttttcccggt
    17461 gaaaaaatcc gaaaacaaat tgactcagcg gtacctggct gtaaacacgc ttttatcaat
    17521 cgccaagacg ctttgccaaa agcaggtcgt ggccttggag tggaacatgc cagtagcgct
    17581 aatattcggg aagcactcga aaacttccat acaagtggga cgcctgcaga aaaacaattt
    17641 atctccaaag atattcttat tcatctcggt cttcttggag gagcgggagc gaaagaacgc
    17701 cgagaaaaaa tcggtaatat actaaaaatt ggctatacaa acggaaaaca actgcaaacc
    17761 agactagaat catttgcaat cagtgaagac cagttagtag ccgcgtgcca aaagattatg
    17821 caggaggaag aaaatgagta aagatattgc aactcccgga agaacgacag aaatcctaaa
    17881 gaagtatggt ttcttattta aaaaaagtct gggtcaaaac tttttaatcg acagtaacat
    17941 tttgacacgg attacagata cagccgaaat aacaaaagaa acaaatgtca tcgaaatcgg
    18001 accaggtatc ggcgcgctaa cagaacaatt agcaaaaacg gcgaacgaag tagttgcttt
    18061 tgaaattgat caacgtttac tgccaattct tgacgatacg ctaagtgcat acaataatat
    18121 ccaagtggtc cacggagacg tgctaaaagc agatgtggag gaagttatcg cagagcaatt
    18181 cgcgaagccg gatctaccac tgaaaatcgt agccaacctt ccgtattacg taactacacc
    18241 gattatttta aaattactcc atgacaatat tccggcagat tcgatgacgt ttatgctcca
    18301 aaaggaagtt gcggaccgga taagcgcagt tccaagcacg aaaagctacg gaagcctaac
    18361 aatcgctatc caattttaca tggaagcaga actagccttt atcgtgccaa aaactgtctt
    18421 catgccgcaa ccgaatgttg attccgcagt aattcatctg aagcgtcgca aagaaccatt
    18481 agctgaagta aacgacgaag aatttttctt tgaagtaaca agagcttcgt ttgctcagag
    18541 aagaaaaacg ctttggaata atttagcttc aaaattcccg gctttaaaac cacgcaaaga
    18601 cgatttggta gaaggtctaa atgctattgg gatagactta atccgtcgcg gagaaacgtt
    18661 ggatattccg gaatttgcta aattaagcaa ctttttaggt gattttttaa agggaaaata
    18721 atttttttca aaaaaagcgc tttcttagtt gacagttagc ccttccaact gttaaaatat
    18781 ttggttattg atttcggagc cgaactatgc tataatggat attagtgagg tggaaaataa
    18841 atgccaaaaa ccattgcaag cattaagacg aatttagatt ctagattagg taaagcattg
    18901 acattgaaag caaacggtgg tcgtaagaaa acgattgaac gttgcggtat cctagctgaa
    18961 acatatccat ccgttttcat tgtggagctt gatcaagatg aaaacaactt tgaaagagta
    19021 tcctatagtt acacggatat cttaacagac gcagtagaac ttgtatttac agatgataat
    19081 aaagaattag ctttataata aagctgaagt agccgaacca tatagcgtgg ttcggttttt
    19141 gctatacata gaagttgttt tgggccgcta gctacatatt ttttctttca tatgatagaa
    19201 tagaaaaaga gattttgaac gcggaggcca agaaaaatga aaataagcat tacagcacca
    19261 gctaaaatta atctttcact tgatgcgctg tacaaacgtg aggacggcta tcatgaagtg
    19321 gaaatggtga tgacaacaat cgaccttgct gatagattat acttagaacg cttagacgaa
    19381 gacaaaattg tgctggatgt aaaagcacac tttattccag aagatcgtcg caatttaatt
    19441 tatcaagcag ccctcctttt aaagaagcgt tttgacgtaa agatgggtgt gcgcattaca
    19501 attgataagc acattcctgt ttctgcgggt cttgctggtg gtagttcaga tgcagctgca
    19561 gcgctcaaag gattaaatgt catttgggaa cttggtcttt caatagaaga attagccgaa
    19621 attagttcgg aaattggttc tgatatcgct ttttgcgtat acggcggaac agcgctagca
    19681 actgggcgcg gggaaaagat ttctgcgtta cctaatattc ctggttgttg gattgtgctt
    19741 gctaaaccga gcattagcgt gtctaccccg actatctata aagaacttca agtagataac
    19801 gtagaacacc cagacacaca aaaaatgatt gaatccatta aaaatggcga tttagacggg
    19861 atatttgcgt ctacaggaaa tgtattagag tctgtgacat tagaaaaaaa tccgcaagtt
    19921 aaacgaataa aagatcggat gttagcgttt ggtgctgagg cggccctaat gagtggtagc
    19981 ggtccgacag tgtttgcgct tatcaaacag tactccagag caaaacgtgt ctataacggc
    20041 ttgcgtggct tttgtgagga agtttatatg gttagaccat ggagtgaagg cgagaacgat
    20101 acaaatataa ataattaatg aatgagaggg gtcaaagaaa tgaaaattat ttttaatgca
    20161 gatgattttg gaattagccc gggagcagtt tatggtattt tagagtctta taagcgaggc
    20221 gttgtgaaat ctaccacgct tcttgctaat agcccggcat ttgatttggc agttgaagtt
    20281 gcgaaagaaa acccaggtct cgatattggt gcgcatttga ccctgacgtt cggttctcca
    20341 gtccttcaag gtttagaaac gctaacggat gatgatgggc gtttccgcag aaattatacc
    20401 tcacttgaaa acggcttagc tgatgtagat atgaatgagg tggagcgcga gttaactgca
    20461 caaatcgaga aaattttaga tgcaggaatc actatttctc attttgatac acatcattca
    20521 attgagccgc taatttatcc cgtacaacat aaacttgcgg aaaaatacgg tgtgagcatt
    20581 cgacgtcatt ctgatgtttc ggacttcggt gctataaaaa ctcctgactt attcgctacg
    20641 gagttttatg cagacggtgt atcttttgaa acgattaaaa aattagtaca aaagcatatc
    20701 ggaacgaatg atgtagtcga agtgatgact catccggcat ttattgatga aacgttgcgc
    20761 gaaatatcta gttacgtaga gccgcgcatc aaagaagttt caattctaac ttcaagagaa
    20821 ctacaagcat atttaggcca acaagaagta gagattatta gtttccgcga tttataagag
    20881 catgggcctg tcaaaggatg tttatttggc aggcttttcg ttaggttaaa ataataaatg
    20941 ttgtcaattt tatagaaaac gttttataat agagaaaata cggacaaaat acgtgaaata
    21001 gctttttaat atacggaatt ttatcaaagg gagagagatt atgaagattc gtcgcagtga
    21061 acgattaatt gatatgacgc agtttctatt atcgcatccg cgaaagttag tgccgcttac
    21121 gatgtttgct gaacgttatg gctcagctaa gtcttctatt agtgaagatt tggttatcat
    21181 aaagaaaaca tttgaagaca gagggattgg tacgctcgaa actgttccgg gtgctgctgg
    21241 tggtgtgcaa tatatttcga tagcgggaaa tgacgatgtg ctggattttg tgcatacgct
    21301 atgtaataga attgcggaac caaaccgttt gcttccaggg ggctatttgt acttatctga
    21361 tttacttgga gaaccagtaa cgctcaaagc aattggtaaa attttagcaa cgaaattcaa
    21421 taaccaaaaa atagatgcga ttatgactgt tgcgacaaaa gggattccga ttgcacaagc
    21481 ggttgctgaa catttaagtg tcccctttgt tatcgtacgt cgtgatagca aagtgacaga
    21541 aggctcaact gtaagcatta actatgtttc aggttcatcc aaacgaatcg aaaaaatgga
    21601 attatccaaa cgaagcttag ctgaaggctc taatgtagta attgtggatg actttatgaa
    21661 agctggagga acaattaatg gtatgaaaaa tctgctagaa gaattcaacg cgcatttagt
    21721 tggaattggc gtgttagttg aatccgaata tgcggaagag cgcttagtgg atgattacgt
    21781 atctcttgta aaaataaaaa atgtgaacat gaaagaaaaa caaatcgaag ttgttgatgg
    21841 gaattacttt aatagttgat tctaaaccct ggaaaatatt ctggggtttt tcttttttgg
    21901 gggcgaattg ctactaaaaa caaatcagtc ttccgatgta cttcactcag ttaactttta
    21961 tggtagaatg aattctatcg ttactacata aaattcaagg cttctagact ttaggagcag
    22021 aaggagaaca ttcatgaaaa agtgggttaa atggttaatt gttatcgtaa ttatcgcagt
    22081 agtagccgtt ggtgcggttt tcttgctgtc gaaaaatagt ggctccgtaa cacaagaaaa
    22141 attagttaca gccaaagtaa aacaaggaga tatgaaaatc aatgctacag gaacaggcgc
    22201 gatttctccg gtaaacacac aagttccaga ttacgatgaa cttcaattag tagcgcaaat
    22261 ggacgaactt gatattccta acatcaagaa agaccaagaa gtaaaagtca cagtaacagc
    22321 actacctgac aaaacttata caggaaaagt gaaagaaatc gcagaacaag gtcaagtaca
    22381 aaatggtgtg tctagcttct ctgtaatcat ttctcttgat aaaacagacg atttaaaagc
    22441 gggtatgact gctgatgctt ccattttagt aaatgagaaa aaagatgcac tatacgttcc
    22501 aattgaagct gttcaaaaag acagtgacga caaatattac gtattagttc cagaagaaaa
    22561 agacaatggg aaaacgaaaa aagtgaagaa atttgtagaa actggtcttc ataatgaaga
    22621 taatatcgaa atcactaaag gtgttaaaaa aggcgaaaaa gtaatccttc ctacacaaga
    22681 aacttctacg gttcctggtg ctcctagcta agttttttgt aagtacaaat cagacaaatt
    22741 gtatgaagga gggataaaca tgccaaaacc gctaattgac atgaaaaatt taacaaaaac
    22801 gtatacgcta ggcggagaaa cttttaaagc attagacgat gttactttta ccgttgagca
    22861 aggcgagttt ttatccatcg ttggtccgtc cggttccggt aaatccactt taatgaatat
    22921 gattggttgt ttggatgttc cggatgaagg cagctatcac cttgatgatg tagatgtttt
    22981 taaactgagc gataataaac tatccgaaat cagaaataaa aaaatcggct ttatttttca
    23041 gcagtttaat ttgcttccaa aattatctgc ctttgaaaat gtggaactac cactaattta
    23101 tgcaggacta agtgtttctg cacgagaaaa agccgcaatc gaatgtttag aaaaagtagg
    23161 cttacttgaa aaacgtagaa acttaccaac gcaactttct ggtggccaac agcaacgtgt
    23221 ggctatcgca agagcactcg ccggcaaacc gcaaattttg ctagcagatg agccaactgg
    23281 tgcgctcgat tcgaaaacag gtaaagaagt aatgggaatc ctacaagaat tgaatcgtgc
    23341 tggaaacacc atcgttatga ttacgcatga tccaacaatc gcctcatacg gtacaagaag
    23401 tatccgtatt caagatggta aattattcca tgaggaggcg acgcaagcat gaatgttctc
    23461 caaagcatga aaatggcatg gaaacaatta aaggcaagta aattaaggtc ttttctaacc
    23521 atgctaggta ttattattgg tgtcgcatcc gttattcttt tagtatctct agggaatggt
    23581 gtaacgcaag aagttgatga ccaaatgggc gatttgggtt cgaatttaat tacagtagtt
    23641 aatagctctg ttaatccaaa cgacaaatat acgtatgatg aagtaatgaa atatcaaaac
    23701 attgatggag tcaaaagcgt ttctccagaa ttatctggac aagtcaatgc aacttttgat
    23761 tataagaatt caagtaataa ggtgataggc acgaatgacc aatataaggc cgcgcgtagc
    23821 ctagaaatga aagaagggcg tttcctacta ccgattgata ccgaatatgg ccagaaagta
    23881 gctgtaatag gctctacggt agcaagtgat ctatttggtt ttggggatcc gattggcgaa
    23941 accattagat taaacggaat gccttacaaa gttgttggtg tcttgaaaga aaaaggcgcg
    24001 tctatgatgg gatcgagcga tgaccaaatc tttattccga tttcttccgc tcaaaggctc
    24061 ctaaaagata caaatgtccg tacaatctat gtagaaacaa aatctgccga agatgttgat
    24121 tttgtagtaa acacactaga atcacgtctt gcgattaaat ttggtgacga aaaagaacaa
    24181 gaaaaaaatg cgtcatccgc acaaatggga ccatcttatc aagtcattaa tcaacaagag
    24241 attctcaatg ctttcaacac gattagtaca acgctaacta ctgcgcttgg tgcgattgct
    24301 gctatttcac ttgttgttgg tggtattgga attatgaata ttatgctagt ttctgttagt
    24361 gagcgaacga gagagattgg tataagaaaa gcgctcggag ctaaaaaacg agccatcctg
    24421 ttacaattcc taattgaatc cattgttatt agtgtctgtg gtgggattat cggtattatt
    24481 atcggggtct caggagcgct catatttggc tcagtcgcag gtatatcgtc aggaataact
    24541 gcaggaacca ttatcttctc cttcgtattc tcactatgta tcggagtgat atttggtatc
    24601 gcacctgcta ataaagcttc gaaattaaga ccaattgacg cattaagatc cgaataaata
    24661 aaagaagcct gaaataagct gtttcgggct tcttttttta ctaaaattag ctactaagtt
    24721 gtcttgtcat ctatatttaa tctttttgtc acaattaaac gctttcaata gccggttttg
    24781 gtaaaaaatt tagaataaaa ataaaattaa ttctcgcaac atgcattaga atggggtttt
    24841 gggggaatat agtctctgtt ggttaattag agtaaatggg atagagaagt a
//
LOCUS       DASDXX010000019        24774 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.019, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000019 DASDXX010000000
VERSION     DASDXX010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 24774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24774
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.019"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            7..312
                     /locus_tag="U0280_000632"
     CDS             7..312
                     /locus_tag="U0280_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2270589.1"
                     /translation="MKTIMLVCSAGMSTSLLVTKMEKAAAEKGLEAKIFAVAEAEAAN
                     HLDEIDVLLLGPQVRFLEGNMKKKLEPKGIPLAVINSVDYGMMKGDKVLEQALELMK"
     gene            447..1754
                     /locus_tag="U0280_000633"
     CDS             447..1754
                     /locus_tag="U0280_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2270590.1"
                     /translation="MNGFIAFMEKYFIPYAAKIGGQRHLVAIRDGFITTMPLMILGSF
                     AVLINNFPIPAYQKFMNNLFGEGTWQAFGGNVWNGTFAILALLIAFTVAYNLAKSYDK
                     DPLSSAVVSVATFFTIGAIAPGADGVANTGGLGSTGLFLALIIAILSTEIFTRLSGSP
                     KLIINMPDGVPPAVSRSFAALFPAMITVSIFGLITAFFQAAGVTNLVISFYELVQEPF
                     MGLANSLPAALLLAFVSAFLWFFGLHGANIIDPFMQTINIPAIEANVKALEAGKELPY
                     IVNKPFFDSFVNLGGTGATIGLIIAIFIVARKHKAYMTVSKLSAAPGIFNINEPMMFG
                     LPIVLNPIMFIPYILAPLVLVTVAYFATAIGWVPACTIVTPWTTPPIIGGALATQSIA
                     GGVLAAVNLGLSILIFLPFAKIAQIQELRREKEALAAEGVTAE"
     gene            1791..2093
                     /locus_tag="U0280_000634"
     CDS             1791..2093
                     /locus_tag="U0280_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2270591.1"
                     /translation="MDLEQTIMSLIVFGGNAKSDAMLAIDSAKKGDFAQADEQIAQAE
                     QALLEAHHSQTKLIQGEARGEKTEVSLLLVHAQDHLMNAITFKDLAKEIVDLYKNK"
     gene            complement(2115..3236)
                     /locus_tag="U0280_000635"
     CDS             complement(2115..3236)
                     /locus_tag="U0280_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2270592.1"
                     /translation="MKRDVLYNRIILSVFLLSLVSCVAIYYAQQTNQYNTNFLGMQLV
                     FLAIGTLTCFGVSRLPVEFLRHHAIWLYVIMVITLLGILIPNPLVQNINGATRWYRFA
                     GLSFQPSEVVKSIFIFVLAHFAVKYQAQKWKQLGILTVLTGIVLLLIMKQPDLGTTIV
                     YGVTALAIILLAIKSTKLMVGIITLILTAATVGMYVVVYHISLLEKIGFHAYQFSRIQ
                     TWLDPTTDPDAVYQLNLSIKAVGSGMMTGSSGTNAYIPESHTDMIFSTIGHQFGFVGV
                     SLLLILFMLLIHQLIMAALLMKNTFSSLVLAGFAVSFAFNIFENIGMTVGLMPLTGIP
                     LPFISYGGSAVLGNFIAVGVVLAIIRSDADLIEEKNQLS"
     gene            complement(3233..4363)
                     /locus_tag="U0280_000636"
     CDS             complement(3233..4363)
                     /locus_tag="U0280_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2270593.1"
                     /translation="MRAGRVLFVTYILLAIWSLLLVYSTSYGVAVMRYKVEPSYFFHR
                     QLLFYGLGFLGLLVCSRINVQLFYLRRTLRILAGSLLGLLLLVLLTGSAANNAQRWLS
                     IAGVTFQPTEMVKLLLILVIATVFLKKGCGVRVQYWLLGFLFLTVGLVFLQPDLGTAL
                     ILGVIGVALFLTSGVGLTRLVRVAIWSFGLLLLVAMLLYFFHPDFFSSAKLGRFAFLD
                     PFNLDNLDASYQLRNGYYAIGSGGIFGNGLGGSIQKLGYLPEPHTDFIMTVIAEELGV
                     FGVIWTIFLLMMLSFTALYIAISSHFIFDSMVCIGVSSWVSVQTFLNLGGVSGIIPLT
                     GVPLPFISYGGSSVVMLSCAVGFVLAAARRNVLAKTREVVYL"
     gene            complement(4364..6934)
                     /gene="mgtA"
                     /locus_tag="U0280_000637"
     CDS             complement(4364..6934)
                     /gene="mgtA"
                     /locus_tag="U0280_000637"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HEM2270594.1"
                     /translation="MKKLHVKKQGNNLLKESQIGKEKVLEKLGVMETGLTNVEVTERL
                     AEFGPNQTVEEKKVSNLRLFIRAFNDPFIYILAMLMVVSYLTDDMEATVIMALMILAS
                     GILGFIQTSRAERASYALKNMVKNRVNVIRNGSMDLIMQDAIVPGDLIEISAGDIIPA
                     DARVISATDLLINQSALTGESIPAEKFVEDKSANPEIFERENLLFMGTDVLSGHGRAV
                     VLRTGSSTFFGSLSIAATERRGDTSFDKGVKSISKLLFYFMMVMVPIVFMINGLMKGN
                     WLEAFLYAVAIAVGLTPEMLPMIVSTNLAKGAINMSKKKVIMKELSAIQNIGAMDILC
                     TDKTGTLTEDKLELIKYIDSAGETSERVLKMAYLNSYFQTGWKNVLDHAVIAKLDEST
                     AAAWKKVGEIPFNFDRRRLSVVVENKAETRMITKGAVEEMLTVCTHKEFGGAVSTLSE
                     SEKSELQDMCAEMNRSGIRVIAVAYKTGRVGEAFTKTDEEQMIIAGFLGFRDPVKAST
                     KEAIAHLFKNQINVKVLTGDNEIVTKRICQEVGIPANGFLLGADIEELSDEELTRELR
                     KYHIFAKLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDTAADITKD
                     ASSVILLEKSLTVLNDAVMEGRNVFGNILKYLKMTASSNFGNVFSVLVASAFIPFLPM
                     LSLHLLLQNLLYDFSQLTLPWDKMDRSFLKKPHQWEQKGMLRFILCIGPVSSIFDIAT
                     FLIMWFVFSANTVAEQALFHSGWFVVGLLTQTLVVHMIRTEKIPFIQSRAAAPVMIAT
                     LSVMALGIIIPFTGFGHSIGFVSLPGSYFPWLILILVGYMATMQLVKTIYIRKFREWI
                     "
     gene            complement(7488..8054)
                     /locus_tag="U0280_000638"
     CDS             complement(7488..8054)
                     /locus_tag="U0280_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2270595.1"
                     /translation="MITNESIMDATLCMMAKHGIKGSTTRQLAEAAGINEATIFKKFK
                     SKDNLIHMTLEVQFESMKAEINQFFDKDFESAKVFLRQASQFISDIYEKYRDFMVISV
                     REMGSKDMEFIDPSIVEYLYERVNQKVKEMVPSKNSAQEADAISLILNSVILLIMVEK
                     VRDDIYKRPPTITTTADSLADVLLKLLK"
     gene            8216..9991
                     /locus_tag="U0280_000639"
     CDS             8216..9991
                     /locus_tag="U0280_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-beta-N-acetylmuramoylhydrolase"
                     /protein_id="HEM2270596.1"
                     /translation="MQKTRKERILEALQEEKKNKKSKKFKTGATIAGVTAIATSITVP
                     GIEVIVSADETAPADEASKSAEANTTKETPATATPENTTEPTVEAKQTETKEQTKTAE
                     ENQAAAKQVEKAPAEPATVSNPDNATSSSTPATYNLLQKSALRSGATVQSFIQTIQAS
                     SSQIAAENDLYASVMIAQAILESAYGTSELGSAPNYNLFGIKGAYNGQSYTKQTLEDD
                     GKGNYYTITAKFRKYPSYHQSLEDYAQVIRKGPSWNPNYYSKVWKSNTTSYKDATKAL
                     TGTYATDTAYATKLNDLISRYNLTQYDSGKTTGGNSGSTGNTGNSSNTGNTSNAKIYT
                     VVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGT
                     STSKPSTGTSTNAKVYTVVKGDSLWRIANNHKVTIANLKSWNNLKSDFIYPGQKLKVS
                     AGSTSNTNTSKPSTNTNTSKPSTNTNTNAKVYTVAKGDSLWRIANNHKVTIANLKSWN
                     NLKSDFIYPGQKLKVSAGTTTNTNTAKPSTNKPSNSTVKTYTVKKGDSLWAISRQYKT
                     TVDNIKAWNKLTSNMIHVGQKLTIK"
     gene            complement(10222..10551)
                     /locus_tag="U0280_000640"
     CDS             complement(10222..10551)
                     /locus_tag="U0280_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP receptor"
                     /protein_id="HEM2270597.1"
                     /translation="MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTF
                     IIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMP
                     VESFHHF"
     gene            complement(10660..11286)
                     /locus_tag="U0280_000641"
     CDS             complement(10660..11286)
                     /locus_tag="U0280_000641"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEM2270598.1"
                     /translation="MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIKTREPGGSP
                     ISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKTVLCDRFMDSSL
                     AYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKE
                     DITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA"
     gene            complement(11339..12718)
                     /locus_tag="U0280_000642"
     CDS             complement(11339..12718)
                     /locus_tag="U0280_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2270599.1"
                     /translation="MRNQSKMPLVERLDAHAKSCPISLHVPGHKSGAIYPDAWQKFLK
                     WDVTEITGMDDLHHPEDVILEAEELLAECYGSKKSYFLVNGTSGGSLAVIMATLKHGE
                     KVLVPRDAHKSILHGIELAGGEPIFLTPATNEEVGVASGVTTELLEETLHNHPDIKLC
                     IFTYPSYYGTTFNLHKCIQIAHDFGAVVFVDEAHGAHFLTSSEFPKSAVELGADVVVQ
                     SAHKTLPALTMGSYLHVVNDLPIFEKLPYYLQVFQTSSPSYLIMASLDAARKYAATYT
                     AADVEAFWKMRARWIKWLTKNKFDVILPDDPLKIIVRKTGYTGYELQAIFEESSYFPE
                     LADESQVLLILPLIKKGIDFTPISRIHSPVKKEIAKEPYEMSAPFASGLALTYEEMHA
                     RATEFVLLDEATTRVSAETISLYPPGIPAIIRGESITEKHIRELKNIRTRHYQGGEKL
                     AENYIRVFR"
     gene            12902..13891
                     /gene="dhaK"
                     /locus_tag="U0280_000643"
     CDS             12902..13891
                     /gene="dhaK"
                     /locus_tag="U0280_000643"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM2270600.1"
                     /translation="MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPG
                     KVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLI
                     VKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKII
                     GAAAEAGASLDELKALGEKVIASVKTLGVALTPCTVPEVGHPGFELGDDEIELGIGIH
                     GEPGFTREKIMPSASLAKQLYERISNESKFLPGDKVVVLVNGMGATPLMEQYVFANDV
                     HELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW"
     gene            13913..14509
                     /gene="dhaL"
                     /locus_tag="U0280_000644"
     CDS             13913..14509
                     /gene="dhaL"
                     /locus_tag="U0280_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM2270601.1"
                     /translation="MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMAR
                     GLGELKKAFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDSETIDA
                     EGLTKVLEAGLEGIEKRGKSHAGEKTMIDVWEPVVNALHQEDLTDDVVEAALQKTKDL
                     KATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS"
     gene            14513..14887
                     /locus_tag="U0280_000645"
     CDS             14513..14887
                     /locus_tag="U0280_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM2270602.1"
                     /translation="MAKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRI
                     GTSFDAVNEAIESNEANKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATA
                     AQVQMDEKPEVIAANLKTIEIK"
     gene            14993..15844
                     /locus_tag="U0280_000646"
     CDS             14993..15844
                     /locus_tag="U0280_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2270603.1"
                     /translation="MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAF
                     VSAATIYRLINKLGLNGIGELKIEIASSLRETNEEKDLNYDYPILESDTPYQIMTNLN
                     QIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLV
                     NVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNP
                     LVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQ
                     KMNTELE"
     gene            15963..16802
                     /locus_tag="U0280_000647"
     CDS             15963..16802
                     /locus_tag="U0280_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2270604.1"
                     /translation="MTTQAIILDIDGTLLNDDKKISPETKKALITAQQNGVKLILASG
                     RPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATSEELFNQALTVEEGKAVLEHMKQ
                     FEVKVMIDKEDYMYTNDVYDCYVPYRGEVINIVQYESRGGNFKLCEKDDLAAFLDYRL
                     NKILTAGDPAYMQENYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMG
                     IHAENVIAFGDGHNDITMVEYAGTGIAMQNAVPELKAAASSVTLSNNEDGIAHVLNSL
                     IPS"
     gene            complement(16830..17276)
                     /locus_tag="U0280_000648"
     CDS             complement(16830..17276)
                     /locus_tag="U0280_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX pyrophosphatase"
                     /protein_id="HEM2270605.1"
                     /translation="MRQPFQVLVIPFIKTEANYQFGVLHRTDADVWQFVAGGGEDEEA
                     ISETAKRESIEELNLGVKVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQ
                     VTLSLEHSELRWVSYESAVQLLEWDSNKTALYELNERLKNNDMKAI"
     gene            17392..18234
                     /locus_tag="U0280_000649"
     CDS             17392..18234
                     /locus_tag="U0280_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2270606.1"
                     /translation="MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVG
                     YRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQ
                     LDKIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPV
                     VDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIV
                     LRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYV
                     RSEI"
     gene            complement(18280..18525)
                     /locus_tag="U0280_000650"
     CDS             complement(18280..18525)
                     /locus_tag="U0280_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaL family protein"
                     /protein_id="HEM2270607.1"
                     /translation="MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQEKWHKQKVL
                     MRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK"
     gene            complement(18540..19136)
                     /gene="recR"
                     /locus_tag="U0280_000651"
     CDS             complement(18540..19136)
                     /gene="recR"
                     /locus_tag="U0280_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEM2270608.1"
                     /translation="MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFA
                     KALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHG
                     LYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLL
                     KPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV"
     gene            complement(19245..19562)
                     /locus_tag="U0280_000652"
     CDS             complement(19245..19562)
                     /locus_tag="U0280_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEM2270609.1"
                     /translation="MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTV
                     KATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNI
                     PGM"
     gene            complement(19592..21331)
                     /gene="dnaX"
                     /locus_tag="U0280_000653"
     CDS             complement(19592..21331)
                     /gene="dnaX"
                     /locus_tag="U0280_000653"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEM2270610.1"
                     /translation="MAYQALYRIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFS
                     GPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVE
                     EIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPH
                     KLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDAL
                     SLLDQVISYGSEEVAVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGK
                     DPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILN
                     TAQQQMRFSNHPGIYVEVALVQLTQAGKSVAGGGNVPADAASGSDVSDLKRQMEQMHQ
                     EIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQ
                     LIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETIT
                     SSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDGDAEDGANPEAKKPAEDPFVAEA
                     AKLVGEDLLEIKD"
     gene            complement(21580..22044)
                     /locus_tag="U0280_000654"
     CDS             complement(21580..22044)
                     /locus_tag="U0280_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3284 domain-containing protein"
                     /protein_id="HEM2270611.1"
                     /translation="MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKY
                     QRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIET
                     EKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ"
     gene            complement(22062..22244)
                     /locus_tag="U0280_000655"
     CDS             complement(22062..22244)
                     /locus_tag="U0280_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3188 domain-containing protein"
                     /protein_id="HEM2270612.1"
                     /translation="MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIG
                     CVFIVLKIRKDKKEKN"
     gene            complement(22247..22468)
                     /locus_tag="U0280_000656"
     CDS             complement(22247..22468)
                     /locus_tag="U0280_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270613.1"
                     /translation="MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIE
                     DEEKAAKIAKETIKATEIGSVLYFQVSVG"
     gene            complement(22603..23967)
                     /locus_tag="U0280_000657"
     CDS             complement(22603..23967)
                     /locus_tag="U0280_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2270614.1"
                     /translation="MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSI
                     AVLLNAFFRDFPTDWGWTGFVEAMQPLIGINGYVYNGTLAIVSIIFAFSLGYNLSKAY
                     EVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLS
                     QVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVV
                     GIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVL
                     APVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSK
                     RADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGI
                     VGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEE
                     EMKA"
     gene            24408..24563
                     /locus_tag="U0280_000658"
     CDS             24408..24563
                     /locus_tag="U0280_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270615.1"
                     /translation="MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPKNASEQKKQDV
                     EKKTDDN"
     gene            complement(24595..>24774)
                     /locus_tag="U0280_000659"
     CDS             complement(24595..>24774)
                     /locus_tag="U0280_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270616.1"
                     /translation="SNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVN
                     VRIDEDKEMVIFSIK"
BASE COUNT         7760 a         5410 c         4350 g         7254 t
ORIGIN      
        1 ataatcatga aaacaatcat gttagtatgt tcagcaggta tgtctaccag cttactagtt
       61 acaaaaatgg aaaaagcagc tgcagaaaaa ggccttgaag caaaaatctt cgccgttgca
      121 gaagcagaag cagctaacca tttagacgaa atcgatgttt tattacttgg accacaagta
      181 cgtttcttag aaggaaacat gaagaaaaaa ttagagccaa aaggtattcc attagctgtt
      241 attaacagtg ttgattacgg aatgatgaaa ggcgacaaag ttttagaaca agcattagag
      301 ttaatgaagt aaaaagaggg taattacagc tagctagctg aaaattataa aaaactaaag
      361 aggtatagta ataacgccat gttttagaaa ttatgtattc gtcttaaccc ggctgttact
      421 ttatccctca aaaaggagaa taaaaaatga atggttttat cgcatttatg gagaaatatt
      481 tcattcccta cgctgccaaa attggtggac aacgtcattt agtagcaatt cgtgatggtt
      541 tcattacaac tatgccactt atgattctag ggtctttcgc cgttttaatt aacaacttcc
      601 caattccagc ttaccaaaag ttcatgaata acttatttgg tgaaggaact tggcaagcat
      661 tcggcggaaa cgtttggaac ggtacttttg ctatcttagc actacttatc gctttcactg
      721 tagcttacaa cttagctaaa tcttatgaca aagatccact ttcttccgca gtagtttctg
      781 tagcaacttt cttcacaatt ggcgcaattg ctccaggtgc agacggcgtt gcaaacactg
      841 gtggtcttgg atcaactggt cttttcttag cattaattat tgcaattctt tccactgaaa
      901 tcttcactcg tttaagtggt agcccgaaat taattatcaa catgcctgat ggtgttccac
      961 cggcagtttc tcgttcattc gcagctttat tccctgcaat gatcactgtt tctatctttg
     1021 gtcttatcac tgcgttcttc caagcagctg gtgtgactaa cttagtaatt tctttctacg
     1081 aattagtaca agaaccgttc atgggtcttg caaactcctt gccagcagct ttattattgg
     1141 catttgtttc tgctttcctt tggttctttg gtttacacgg tgcgaacatt atcgacccgt
     1201 tcatgcaaac aatcaacatc ccagctatcg aagctaacgt aaaagcacta gaagctggta
     1261 aagaacttcc ttacatcgtt aacaaacctt tctttgactc tttcgttaac ttaggcggaa
     1321 ctggggcaac tatcggttta atcattgcta tctttatcgt agctcgtaaa cataaagcgt
     1381 acatgacagt ttctaaattg tctgcagcgc caggtatttt caacattaac gaaccaatga
     1441 tgtttggtct tccaatcgtc ttgaatccaa ttatgttcat tccgtacatc ttggcaccac
     1501 ttgtacttgt aactgtagct tactttgcaa cagctattgg ttgggtacca gcttgtacta
     1561 tcgtaactcc ttggactaca ccaccaatta tcggtggagc acttgcaaca caaagtatcg
     1621 caggtggcgt acttgcagct gtaaacttag gtctatctat cctaatcttc cttccattcg
     1681 cgaaaattgc tcaaattcaa gagctacgtc gtgaaaaaga agcacttgct gctgaaggcg
     1741 ttactgctga ataattttta aaaaccaaaa ctttaaggac gtgtttacag atggatttag
     1801 agcaaactat tatgagcttg atcgtgttcg gtggtaacgc taaaagcgat gctatgttag
     1861 ccattgattc cgctaaaaaa ggggatttcg ctcaagcaga cgaacaaatc gcccaagcag
     1921 aacaagcact acttgaagcg catcattctc aaacaaaact tatacaaggt gaagcacgtg
     1981 gcgaaaaaac agaagtttcc cttctactcg ttcacgcaca agaccactta atgaatgcaa
     2041 tcactttcaa agatttagcg aaagaaattg tagaccttta taagaataaa taacactaaa
     2101 aaaaccagtt gtcgtcatga cagctggttt ttttcttcta ttaaatcggc atctgaccgg
     2161 ataatcgcta gcactacacc cactgcaata aaattaccta gcacagcact cccaccataa
     2221 ctaatgaaag gaagcggaat ccctgtcagc ggcataagcc caacagtcat gccaatattt
     2281 tcaaaaatat taaaggcaaa actcactgca aagcccgcta aaacaagcga agaaaaggta
     2341 ttcttcatca atagcgctgc cataattaat tgatggataa gtagcataaa taaaattaac
     2401 aacaaactta caccaacaaa cccaaactga tgaccaatcg tactaaaaat catatcagta
     2461 tggctttcag ggatatacgc atttgtcccc gaactaccag tcatcatccc cgaaccaacc
     2521 gcctttatcg acaagttaag ttggtacacg gcgtctgggt cagttgttgg atcaagccac
     2581 gtctgaatcc gtgaaaactg gtacgcgtga aacccaattt tctctaataa gctaatgtga
     2641 tacacgacaa catacatacc aactgttgca gctgttaaga ttaacgtaat aattccgacc
     2701 atcagtttgg ttgatttaat tgccagtaaa ataatcgcta gcgccgtaac cccgtaaaca
     2761 atcgtcgtac caaggtctgg ttgtttcata attaatagta atactatccc cgtaagcacc
     2821 gtcagaatcc ctaattgttt ccatttttgt gcttgatatt tcactgcaaa atgcgccaat
     2881 acaaagataa atatggattt tactacttca gaaggttgaa aagatagccc tgcaaaacga
     2941 taccaacgtg tcgctccatt tatattttgt actaaaggat taggaatgag tatacctagg
     3001 agcgtaatga ccataatcac atacaaccaa atcgcatgat gtcgcaaaaa ctccaccgga
     3061 agcctagaaa caccaaaaca cgtaagcgtc ccaattgcta aaaacaccaa ttgcattcct
     3121 aaaaaattcg tattgtactg atttgtctgc tgcgcataat agattgccac acaactaact
     3181 aaagacaata agaacaccga taaaataatc cggttataaa gtacatctcg tttcataaat
     3241 acacgacctc tctcgtttta gctagtacgt tccgtctcgc cgccgccagt acaaatccta
     3301 ctgcacacga aagcatgaca accgaactgc caccatagct aataaatggc agtggcacac
     3361 cagtaagcgg aataattcca ctcactccac caagattcaa aaacgtctgc accgacaccc
     3421 aagaagaaac acctatacaa accatcgaat caaaaataaa atgactacta atagcaatat
     3481 agagcgctgt aaaacttagc atcatcaaca aaaatatcgt ccaaataaca ccaaaaacac
     3541 caagttcctc tgcaattacc gtcataataa aatccgtatg cggctccggc aaataaccta
     3601 acttctggat actgcctccc aagccatttc caaatatccc accgctccca atcgcgtaat
     3661 agccatttct gagttgataa gaggcatcta aattatctag gttaaacgga tccagaaaag
     3721 caaatctacc caatttggct gaactaaaaa agtctgggtg aaagaaataa agcagcattg
     3781 ctacaagtaa taagagaccg aaagaccaaa tagccactcg cacaaggcgt gtgaggccga
     3841 ctccgcttgt taaaaacaaa gcgaccccaa taacacctaa aatcagtgca gttccaagat
     3901 ccggctgcaa gaagacaagc cccactgtta aaaacaaaaa tccaagcaac caatattgca
     3961 cgcgaacacc acaacctttt ttcaaaaaaa ctgttgcgat tactagtatc agcagcaatt
     4021 taaccatctc agtaggttgg aacgtcacac ccgcaataga cagccatctt tgcgcattgt
     4081 tcgccgcact tcctgttaga agcactaaca gcagtaaccc aagcaaactt ccagccaaaa
     4141 tccgaagcgt tcgtctcagg taaaatagtt gcacattaat gcgcgagcaa acgagtagtc
     4201 ctaaaaaacc aagcccataa aaaagtaatt gcctatgaaa gaaataactc ggctccactt
     4261 tgtatcgcat aacagcaaca ccataactcg tactataaac aagtagcaaa ctccatatcg
     4321 ccagaagtat atacgttaca aacagcacgc gtcctgcccg catttaaatc cactcccgga
     4381 atttccgaat ataaatagtt ttcaccagtt gcatcgtagc catgtagcca accaaaatca
     4441 atatcaacca agggaaataa ctaccaggca agctgacaaa cccaatgctg tgaccgaatc
     4501 ctgtaaatgg aataataatc ccaagcgcca ttacactaag cgttgcaatc atgacaggtg
     4561 cagctgcccg actttgaatg aacggtattt tctctgtacg aatcatgtgt acgactaatg
     4621 tttgcgtaag taagccaacc acgaaccagc cactgtggaa taatgcttgc tccgccaccg
     4681 tattcgcact aaatacaaac cacataatta gaaatgtcgc aatatcaaag atcgaactta
     4741 ccgggccaat gcacagaata aagcgcaaca ttcctttttg ttcccattga tgcggcttct
     4801 tcaaaaatga gcgatccatt ttgtcccaag gaagtgttaa ttgggagaaa tcatacaata
     4861 aattttgcag taaaaggtgt aacgatagca ttggtaaaaa tggaataaat gcactcgcaa
     4921 ccaaaacact aaacacatta ccaaagttag agctggccgt cattttaagg tattttagaa
     4981 tattaccgaa tacattccga ccttccatca ccgcatcatt taaaaccgtt aagcttttct
     5041 caagtaagat gactgagctg gcatcttttg taatatcggc cgctgtatct accgaaatgc
     5101 caacatccgc tttcctaaga gccggagcat cattaattcc gtcaccaaga aatccaaccg
     5161 tatgccccgc ttttttaagc aaaccaatga ttcgcgattt ttgcattggg gttaatttag
     5221 caaaaatgtg atattttcgc agttcgcgcg taagttcttc atcggaaagc tcttctatat
     5281 ccgcacctag taaaaatccg ttcgctggaa tgccaacttc ctgacaaatt cgtttcgtaa
     5341 caatttcgtt atcacccgtc aaaactttta cgttaatttg atttttaaaa agatgagcga
     5401 ttgcttcttt cgtcgatgct tttactggat cgcggaaacc aaggaatccc gcaataatca
     5461 tttgttcttc gtcggtctta gtaaatgctt ctccgactct tccagtttta taagccacag
     5521 caatcacacg aattcctgag cgattcattt cggcacacat gtcttgaagt tcgctctttt
     5581 ccgattcgga tagtgtcgaa acagcaccgc caaattcctt atgagtgcat acagtgagca
     5641 tttcttccac cgcgcctttt gtaatcatcc ttgtttctgc cttattttcg accactacgc
     5701 tcaaacggcg acgatcaaaa ttgaatggaa tctcgccaac ttttttccaa gctgctgcag
     5761 tactctcatc caatttggca ataactgcat gatctaaaac atttttccaa ccagtttgga
     5821 agtaactgtt taaataagcc atttttaaga cgcgttctga ggtttcgcca gcactatcaa
     5881 tgtattttat aagttctagt ttatcttctg tgagtgttcc agttttatcc gtacacaaaa
     5941 tgtccattgc accaatattt tgaatggcgc tcagttcttt catgattact tttttcttcg
     6001 acatattgat tgcacctttt gccaagttcg tgctgacaat cataggtagc atctcgggtg
     6061 taaggccaac agcaatcgct actgcatata gaaatgcttc taaccaattg cccttcataa
     6121 gcccattaat cataaataca atcggtacca tcaccatcat aaaataaaat agtaatttcg
     6181 aaattgattt aacaccttta tcaaaactag tatcgccgcg ccgttcagta gctgcgatgg
     6241 acaacgaacc aaagaacgtc gagcttccag tccgcaaaac aactgcccga ccatgcccac
     6301 ttaacacatc tgttcccata aataataggt tttcccgttc aaaaatttct ggattggcac
     6361 ttttgtcttc cacaaatttt tcagcaggaa tcgattctcc agtgagcgcc gattgattaa
     6421 ttaataaatc cgtagccgaa ataactcgcg catctgctgg gataatatct cccgccgaaa
     6481 tttcaattaa atctccaggt acgattgcgt cttgcattat caaatccatg gagccatttc
     6541 gaataacatt gactctattt ttcaccatat tttttaatgc gtaactcgcc cgttctgctc
     6601 tacttgtttg aataaatcca agtatcccgc tcgcaagtat cattagtgcc ataatcacag
     6661 tcgcttccat gtcgtccgtc aaatacgaaa caaccattaa catcgctaaa atatagataa
     6721 acggatcatt aaacgcccga ataaagagcc gcaaatttga tactttcttt tcttccacag
     6781 tttgattggg accaaattcc gctaatcttt ctgtaacttc tacgtttgtg agccccgttt
     6841 ccataacacc taacttttcc aaaacttttt ctttgcctat ttgtgactct ttgagcaaat
     6901 tgttaccttg cttttttaca tgtagttttt tcattttcct tgcctccaat tctttctagg
     6961 caagctgaga ataacgttta tgtgcgccag agatgaaggt tagtcactct tgcagcttga
     7021 ttactataat acgagtccgg ttcttctact tcctctccct gatggtggtc cattgccttc
     7081 atctcctttc gaattttatc taagcttaat tatctgaaaa aaagatttta attcccagat
     7141 aattattttc ataataaaca tgaaaaaagt ccttaccaaa accttggcaa ggacttctga
     7201 gtttatacgc atactaaaac agactcccct cgctaaagtt ttggcactat gcaacgtaaa
     7261 gaatactctt agccacatta tggaaagcct taatccgaca atccctgttc tacccattgg
     7321 cgtctttgga catttttggg cagtggcctg tgtttgcata ggagcctcac ctaacaggca
     7381 aaactacata tttattatcg ctctaatcgt ctacgagttt aacatagaaa atctaagccc
     7441 gcaagacaaa atgtaaaata cttaactttt atttaacttt tcgtgattta tttcaataat
     7501 tttaacaaaa catctgctaa tgaatctgcg gttgttgtaa tcgttggcgg gcgcttataa
     7561 atatcatcgc gtactttttc caccataata agcaaaataa cactatttaa aatcaaagaa
     7621 atcgcatctg cttcttgcgc agagttctta ctcggaacca tttcttttac tttttgatta
     7681 acccgttcat acaaatattc cacaatcgat ggatcaataa attccatatc tttgctgccc
     7741 atttctcgaa cagaaatcac cataaagtcc cgatattttt cataaatatc cgaaataaat
     7801 tgactcgctt gacgtagaaa caccttggca ctctcaaaat ctttatcaaa aaattgattg
     7861 atttccgcct tcatactttc aaattggact tccagcgtca tatgaataag attgtcttta
     7921 ctcttaaatt ttttaaaaat cgtagcttca tttattccag cggcttctgc taattgtctt
     7981 gttgtggagc ctttgatgcc gtgtttcgcc atcatacaaa gcgttgcatc catgatggat
     8041 tcgtttgtaa tcattatttt acccccgttc aactaagtaa gcacttgctt atattcagta
     8101 taacaaagac gagccttttt gacaatttaa ttacaatttg tcgatatcaa tcataagtaa
     8161 tgtgaagtat gtaataatgg atgtagaata tttaaagaat cggaagtgac ttaccatgca
     8221 aaagacgaga aaagaacgta ttcttgaagc cttacaagaa gaaaagaaaa acaaaaaaag
     8281 taaaaaattc aaaactggtg caacgattgc tggggttact gccatcgcaa cctctatcac
     8341 tgttcccggc atcgaagtaa tcgttagcgc agacgaaaca gcgcctgctg acgaagcatc
     8401 taaaagcgct gaagctaaca caactaaaga aacaccagca acggccactc ctgaaaacac
     8461 aacagaacca accgttgaag ctaagcaaac tgaaacaaaa gaacaaacaa agacagcaga
     8521 agaaaatcaa gctgcagcga agcaagtaga aaaagctcca gctgaacccg caacagttag
     8581 caatcctgac aatgcaacaa gctcttctac accagctaca tacaacctat tacaaaaatc
     8641 agcactccgt tcgggagcaa ctgttcaaag ctttatccaa acaatccaag cctcttcttc
     8701 ccaaattgca gcagaaaatg acctgtacgc atctgtcatg atcgcccaag ccattttaga
     8761 aagcgcctat ggaacgagcg aattaggctc tgctccaaac tataaccttt ttggaatcaa
     8821 aggagcttac aacggccaat cttatacaaa acaaacacta gaagatgatg gtaaaggaaa
     8881 ctactacaca atcacagcta aatttagaaa atatccgtct tatcaccaat ccttagaaga
     8941 ttacgcacaa gtcattcgaa aaggcccaag ctggaaccca aattactact ccaaagtttg
     9001 gaaaagcaac actacttcct acaaagacgc aacgaaagcc ttaactggaa cgtacgcaac
     9061 agacacagcc tatgcaacga aattaaatga cttgattagc cgatataatt taacccaata
     9121 tgacagtggc aaaacaactg gcggaaactc cggaagtact ggtaacactg gaaattctag
     9181 caacaccgga aacacctcca atgcaaaaat ttacacagtt gtaaaagggg actcgctttg
     9241 gagaatcgct aataaccata aagtaaccgt cgcgaaccta aaagcttgga ataatcttaa
     9301 atctgatttc atttacccag ggcaaaaact taaagtaagt gctggttcca ctacatcgga
     9361 tacgaataca tcgaaaccga gcacaggaac aagtacatcc aaaccaagta caggcactag
     9421 cacaaacgct aaagtataca cagttgtaaa aggtgactcg ctttggagaa tcgctaacaa
     9481 ccataaagta actattgcta acctaaaatc ctggaacaat ctgaaatccg atttcattta
     9541 tccagggcaa aaacttaaag taagtgccgg ttctacttct aacacaaata cttctaaacc
     9601 gagcacaaac acgaatacat ccaaaccaag cacaaatacg aacacgaacg ctaaagttta
     9661 tacggtagca aaaggtgact cactttggag aatcgctaac aaccacaaag taactattgc
     9721 taacctaaaa tcctggaaca acttaaaatc cgatttcatt tacccaggac aaaaacttaa
     9781 agttagcgcc ggaactacta caaacacaaa taccgcaaaa ccaagcacaa ataaaccaag
     9841 taattccaca gtaaaaacat acaccgtcaa aaaaggcgac tctttatggg ccatttctag
     9901 acaatataaa acaactgtag ataatattaa agcttggaac aagttaacaa gcaacatgat
     9961 tcatgttgga cagaaattga cgattaagtg aatgtaaaaa gcctacctca tgagcgagat
    10021 aggtcagaaa ctgcggataa agcgagaaat tgctttgtct gcggtttttt tattaaatta
    10081 aacagattct aatgacaatc tgaatagcag agtctattgg ttataattca tttatctcgc
    10141 attgatagtt taaagcatct aattcccatt atagataaaa aaagcaggta gcccttatcg
    10201 catacctgct ttttctctgt tttaaaaatg atggaaactt tccaccggca ttacaaatac
    10261 ggttgcgccg ccaacttgta cttcgattgg gtaaggcaca tacgtatcta ccgtcacacc
    10321 taaggaagcg gatggtgtca tcatttgttc gcgtgcttta cagttttcct tgattatcgc
    10381 tagggcatct tctacacgtt catcttctgt accgatgata aatgtggtgt tgcctgcttt
    10441 taaaaatcca ccagttgtag ctaacttggt cgcaccgaaa ttgccttttg taagtgcgtc
    10501 agacaaacgg ttgctatctt ggtcttggac gattgcaaat atcagtttca aagaaatcaa
    10561 cccttcctaa aaatctatct ttttttctat tatagcaaac aaacaccatt ttaaagagcg
    10621 atatgcactt gtggcaaggt gttgaagtcc cactagatgt taggctaatt gtcgtaaaat
    10681 gtcggctaaa atagtttctg tgatttcttc tggtgtcttt gtagcgtcca ctcgcataaa
    10741 acgttccggg aacatgttga tgactttttc gtaaccagct tggacttttt cgtggtaggt
    10801 aatatcttct ttatccaagc gattgacttc acggccctta ttagcggcga ttctagctaa
    10861 accgacttcg gcaggcacat cgagatagta cgtccggtca ggcaatgtat cctcaatcgc
    10921 atataaattc acttgtaaaa cttgttccat attcatgtca cgtccggcac cttgatacgc
    10981 aagagagcta tccatgaaac ggtcacacag tactgttttc cctgccgcta gagctggacg
    11041 gattgtttca acgacatgtt gacggcgcgc tcccgcaata agtagtactt ctgtttttgg
    11101 gtccatttct tcattgccaa ttccgagcac gatatttctt actttttctg aaatcgggct
    11161 gccacctggt tcgcgcgttt taataaaatc aatgccagct tccgtcattt tttgattaag
    11221 tagtgttcct actgttgttt taccagagcc atctgggcct tcgagtgtaa taaaaattgc
    11281 tttcatttag taatttcctt tccctttcgc gtcgctttct gtttgattat agcataaatt
    11341 agcggaatac acggatgtaa ttctcggcta gtttttcgcc gccttggtag tggcgtgtgc
    11401 gaatgttttt tagttcgcga atatgctttt ctgtgatgct ttctccgcgg atgattgctg
    11461 gaattcccgg cggatagagc gagattgttt cagccgaaac gcgtgtcgta gcttcatcta
    11521 gtaatacgaa ttcggtcgcg cgtgcgtgca tttcttcata agttagcgca agacctgacg
    11581 caaaaggcgc tgacatttca tatggttctt tcgcgatttc ttttttcacc ggagaatgaa
    11641 tccggctaat aggcgtgaaa tcaatccctt ttttaattaa tggtaaaatc agtaatacct
    11701 gtgactcatc ggcaagctct gggaaataag agctttcttc aaaaattgct tgcagttcgt
    11761 agcccgtgta gcctgttttg cgcacgatga ttttaagcgg atcatctggc aaaataacgt
    11821 caaatttatt cttcgtcagc catttaatcc atctggcacg cattttccaa aaagcttcga
    11881 cgtccgccgc tgtgtaagtt gccgcatatt tcctcgccgc atcaagtgac gccataatta
    11941 aataagatgg gctgctcgtt tggaatactt gcaggtaata aggtagtttt tcaaaaatcg
    12001 gtaaatcatt caccacatgt aaataggaac ccatcgttag cgccggcaac gtcttatgcg
    12061 ccgactgaac aaccacatcc gcaccaagct ccactgcact tttcggaaat tcagaacttg
    12121 ttaaaaaatg tgctccgtgc gcttcatcaa caaacacaac cgcaccaaaa tcatgcgcaa
    12181 tttgaataca tttatgcaag ttaaaagtcg ttccataata gctcggataa gtgaaaatac
    12241 atagttttat atctgggtga ttatgtaatg tttcttcgag aagttcggtt gtcacgccac
    12301 tcgcgacgcc aacttcttcg tttgtcgctg gggttaagaa aatcggttct ccgcctgcca
    12361 gttcgattcc atgcaagatt gatttatgcg catctcttgg cactaaaact ttctccccgt
    12421 gcttcaacgt cgccataata actgccaagc ttcctccgct tgtcccattg actaaaaagt
    12481 agcttttttt gcttccataa cattccgcaa gtaactcctc tgcttccaaa atcacatctt
    12541 ctgggtgatg caaatcatcc attccagtaa tttctgttac gtcccatttc aaaaattttt
    12601 gccatgcatc tggataaatg gctccgcttt tgtgtcctgg cacatggagt gatattgggc
    12661 aagacttagc atgagcatct aaccgttcca ctaaaggcat tttagattga ttcctcataa
    12721 caattcccct tttcaaattc tctccttcat tgtaccattt tgctgggttt atgacacatt
    12781 cttgcagttt taaagcgttt tcattttata agttgtataa taaagacagc aactacgttt
    12841 tgactttcta gtaaagggaa attgaggtaa gaggacaatt ttaaaggagg ttttttgtca
    12901 gatgaagaag attcttaacg gtactgatca agtagtagaa cagatggtgg aaggtttagt
    12961 gaaatcgcat gctgatgttg ttcaccgtgt cgaaggaact cgcgtcattg caagaaatga
    13021 taaacgtcca ggaaaagtcg gacttgtaag cggtggaggt tctggtcacg agccggctca
    13081 tgctggttat gttggtcgcg gaatgctctc tgcggctgta tgtggcgatg ttttcacttc
    13141 cccaactccc gaccaaattt atgaaggtat aaaagccgca gatcaaggcg ctggtgtact
    13201 tttaatcgta aaaaattata ctggtgacgt aatgaatttt gaaatggcgg cagatttagc
    13261 agatgccgat gatattaaag tagaacaaat tgtagtagat gatgatattg ctgttgagga
    13321 tagtactttt acaacgggac gccgcggtgt agccgggact gttctcgtgc ataaaattat
    13381 cggggcagcc gcagaagcag gcgcatctct tgatgaactg aaagcccttg gtgaaaaagt
    13441 aattgcttcg gttaaaacgc ttggtgtcgc acttactccg tgtactgttc ctgaggttgg
    13501 acatcctggc tttgagcttg gtgacgacga aatcgaactt ggcattggta tccacggtga
    13561 acctggcttt acgcgtgaaa aaatcatgcc atctgcaagt ttagcgaagc aactgtacga
    13621 acggattagc aatgaaagca aattcctacc tggagataaa gtggttgtgc tcgtgaacgg
    13681 catgggcgca acaccactta tggaacaata tgttttcgca aatgatgtcc atgaacttct
    13741 aaaaaatgcc ggcgttcaag ttgaaaaaac actcgttgga gattatatga cttctcttga
    13801 aatggctggt ttatccttaa ccattttgaa attagaggac gaaaaatggg ttgatatgtt
    13861 gaaactccca gtggacacaa ttgcatggta ataaaatttg gaggaatgaa tcatgactta
    13921 tgataaagat tgggcgttac gctggttaaa tgacttcggc gaacgcgtac aagaaaacaa
    13981 acaattatta agtgatctcg accaagcgat tggtgatgga gaccacggta tcaatatggc
    14041 tcgcggactc ggcgaactca aaaaagcttt cacagaaaaa gaacccgctg atttaaaaga
    14101 tgtatttaaa accgctggga tgacgatggt cagcaaggtc ggcggcgcat ctggaccact
    14161 ttatggaaca gcctttttaa acatgagtaa agcggtagat tcagaaacaa ttgacgcgga
    14221 aggcttaacc aaagtgcttg aagcaggact tgaagggatt gaaaaacgcg gtaaatccca
    14281 tgctggcgag aaaacaatga ttgatgtttg ggaaccagtt gtaaatgccc ttcatcagga
    14341 agatttaaca gatgatgttg ttgaagcagc tttacaaaaa acaaaagatt taaaagcaac
    14401 taaaggacgt gccagctacc taggtgaacg gtctatcggg catcttgatc ccggtgccta
    14461 ctcttccgcc ctcctattcc acgcaatgct tcaaacggag gtgagctaac ccatggctaa
    14521 accttatggc gttgttatca tttctcattc caaagatgtg gcaaaaggcg tccatgatat
    14581 tattaaagaa attgccccag acgtctctat cacgcatgcc ggtggaacag aagacggtcg
    14641 cattggcaca agttttgatg ccgtaaatga agcgattgaa agtaacgaag ctaataaagt
    14701 ctacactttc tacgacctcg gaagcgccaa aatgaatata gaaacagtag aagaaatcag
    14761 cgaaaaagaa attattctct ttaatgcacc aattttagaa ggtgcttacg ctactgctgc
    14821 tcaagttcaa atggatgaaa aaccagaagt catcgcagca aatcttaaaa caattgaaat
    14881 taaataactg aaaaaaatcc ctttagatgc actttgtcta gagggacttt tttatttaat
    14941 ggtataatta tttaaaacaa tttcccattc taaaaagtta ggatttgaaa cgatgaatat
    15001 tttaattaaa atacgcgaac taaccaattt aaccaatagt gaaaaagaac ttgcgaatta
    15061 tattttagcg aacccgaaaa aaacattaca gtgcaaacca aaagaattag ctaccgctgc
    15121 ctttgtctcc gctgcaacta tctaccgttt aattaacaaa ctagggctga acggaatcgg
    15181 tgaactaaaa atcgaaattg cctcgagtct ccgtgaaaca aatgaagaaa aagatttaaa
    15241 ttacgattat cctattttgg aatccgatac accctaccaa ataatgacca acctaaacca
    15301 aatatacaaa ggaaccattg atgaaacatt aaacaacgcc gatccagaag aacttgtcaa
    15361 aattggtgaa aaattaattc aagcgaaaac cattgatgtt tatgcagctt ccgccaattt
    15421 attttttgct caaaacttca aattccaaat gcaggaaatc ggtgttttag tcaatgttcc
    15481 tgaagaagat tatatccaaa gcttatcggc cgccaacagc gatgaaaacc atattgccat
    15541 cgtcgtttct tacggcggtc ggagtcggac gcttcaaaga gtcgtcaaaa tcttgtccga
    15601 aaacaatgtc gatattattt taattacatc tatgcaagac aatcctttag tcgaatttgc
    15661 cacacacaaa atctacatgg catccgctga gaaccattac aacaaagtct cttcgttctc
    15721 aacgcgccaa tctttactaa gcattttcga tacgctttat tccatttatt ttaatcaaaa
    15781 ttacgaaaaa aacattcaat acaaaacgac taattaccaa aaaatgaaca ccgaattgga
    15841 atgatttttc aaaaacacag ccattttcct ttcgaattga aaaaaagctt tcaatatgcg
    15901 ccacatctga ttttttctta atttctagtg atacaataaa gaaaaaaagg agctaaactt
    15961 acatgacaac ccaagcgatt attttagata ttgatggcac tttattgaac gacgacaaaa
    16021 aaatctcacc agaaacaaaa aaagcactca tcaccgcgca acagaatggt gttaaactta
    16081 ttctcgcatc tggtagacca accacaggaa tgcacgtata tgcggaacaa ttagaaatgg
    16141 aaaagcatca cggtttgctc gtttcataca atggcgctaa agtagttgat tgcgcgacaa
    16201 gtgaagaatt attcaaccaa gcacttactg ttgaagaagg aaaagccgtt ttagaacaca
    16261 tgaaacaatt tgaagtgaaa gtaatgattg ataaagagga ttatatgtac acgaatgatg
    16321 tatacgactg ctacgtacct taccgcggcg aagtaataaa tattgttcag tacgaatctc
    16381 gcggtgggaa tttcaaactc tgtgaaaaag atgatttagc cgcattttta gattatcgtc
    16441 taaataaaat tctcacagct ggcgacccgg cctatatgca agaaaattat caagcaatga
    16501 tggccccttt caaagataca cttaattgtg tcttcacagc tgatttttac tttgaattca
    16561 cagctcaggg cattgataaa gccaaagcac ttgataccgt tttaacaccg atgggcattc
    16621 acgctgaaaa tgttatcgca ttcggagatg gacataatga tattaccatg gtcgaatatg
    16681 caggaacagg aatcgctatg caaaatgccg tccctgaatt aaaagccgca gcaagctctg
    16741 ttacattatc caataatgaa gacggcattg cgcacgtgct aaacagttta atcccgagtt
    16801 aagaaaaaag gctgagattc agcctttttt tatattgcct tcatatcatt gtttttcaac
    16861 cgttcattta gttcataaag cgccgtttta ttactatccc actccaataa ctgaaccgca
    16921 gactcataag aaacccagcg caactcgcta tgctctaaag ataatgtaac ctgatatgaa
    16981 caactcgtta aatcaatggc aaaacaatat tctggaacaa catatggttt gttaaatgag
    17041 aaatgaaaat tagggatgga tgcatgtgaa tccaagctat acattttaac cttgactccc
    17101 aaattcaact cttctatact ttcacgttta gcagtctctg aaatagcctc ttcatcttct
    17161 cctccaccag ctacaaactg ccaaacatct gcatccgttc tatgtaaaac accaaactga
    17221 taatttgctt ccgttttaat aaacggtata actaaaactt gaaaaggttg tctcattcac
    17281 tcacgtcctt ttggaattta taaaaaaatc gcatttctat ccttcattct acagaaattc
    17341 tccattttct ggtatgctta agttaataaa ctaaagtagg aggtaaatga aatgacactt
    17401 tctttctcgg atacatacag actgaacaat ggaattgaaa tgcctagaca tggttttggg
    17461 gtctacaagc taacggatga agcgcgtatg cgtactgcgc tggaaaccgc ggtggatgtc
    17521 gggtatcgct tgtttgatac ggcttcattt taccataatg aaaaagagct tggagacttt
    17581 tttgcgtcaa gtggcttgaa aagagatgaa tttttcgtca caacaaaaat gtggaataca
    17641 gaacaaggtt acgatgaaac gcttcgagct tttgaaaaat cgcagaaaaa actacaattg
    17701 gacaaaattg atttatattt agtccattgg ccaaaacaag atactttttt tgacacttgg
    17761 cgcgctgtgg aaaaattata tgacgaggga cttgttcgcg caattggtgt aagtaacttt
    17821 gaagcgcatc atctggaccg cctgcgtaca agtgccaatg tgcttccagt agtagatcaa
    17881 ctcgaaacgc atccgcactt tccgaatcat cttttacacc gctatttaga agagctacat
    17941 atcgttcacc aagcttggag cccacttggc cgtggtgggg ttttacaaga gcaaatcctt
    18001 attgacctag cggaaaaaca cgggaaatca cctgctcaaa tcgtccttcg atggcactta
    18061 caaaataata tctctatcat tccaaaatca gaaacacctt caagaattag agaaaatgca
    18121 gctatttatg attttgaatt atcagaagca gatatgcgcc aagtcgagcg tttaaatact
    18181 ggtgaacgtg tgagccacgc accagacgtg atgtatgtaa gatcagaaat ttagcctaaa
    18241 ataaaaatct actaaaccaa tttggcttag tagatttttt tatttgtttt ttaattgtct
    18301 tgtacgtgct tctttgaaaa ggtaaaaata gcgagcttct gctttctttt cctcatattc
    18361 taaattagga tcatattcaa aacttttacg cattagaact ttttgtttgt gccacttttc
    18421 ttgcgtgact tcaatcaatt ccatcagata agcatcatag gatttgtgta gtttaccaat
    18481 cttcttgttt ttcttccgac caaacttatt gcttctggat tccattttat cacctctgat
    18541 tatacttctc ttcgtccttc cattgctttt gagagcgtca cttcatccgc atattccaag
    18601 tctccgccaa ctggaaggcc atgcgctatt ctagttactt ttatgcctga aggttttaat
    18661 aagcgcgaaa tatacatcgc cgtggcttct ccttcaacat tagggttggt tgctaaaata
    18721 acttcttcaa tcgtgtcatc ttgcaaacgt ttcagcaaat caggaatgtt aatatcttct
    18781 ggtccaattc catccattgg cgaaattgtt ccatgaagta catggtataa gccatgaaaa
    18841 tcacgcattt tttccattgc aatgacatct ttggattctt gtactacaca gataacactt
    18901 cgatcgcgtg acgtatcagc gcaaatataa catggatcct tatctgtaat gtgaccacaa
    18961 acggaacaaa agcttaggtt tcgcttcgca tcaacaaggg cttttgcaaa atctagcaca
    19021 tcgtcttctt tcatatctaa cacataaaaa gctagtcgag ctgccgattt tggtccaatt
    19081 cctggtaatt tcataaaact atctattaat ttcgttatcg gctcaggata atgcataatt
    19141 cgtcttcctc tcaccttcaa aatacaaatg tttcacgtgg aacattctat tgaaaaatag
    19201 ttgagactct tgtaaataag ccaagagtct caaaccaaac aatattacat tccaggaata
    19261 tttaatcctt gtgtgaattt acccattgtt tgtgaagttg tatcttcaat ttgttttaat
    19321 acatcatttg ttgctgcaag tactaaatct tgtagcattt cgatatcttc cggatcaact
    19381 acttcttcat ttataacaac atctgtaatg acgcgtttac cagtagcttt tactgtaacc
    19441 attccaccac cagcagttcc agtgaactct tgagcttcta aatcagcttg agctttcgcc
    19501 atttcctttt gcattttttg catttgtttc atcatacctt gcatatttcc cattccacgc
    19561 atgaataatc tcctctttct tctattgttt tttaatcttt aatttcaagc aaatcttcac
    19621 caacgagttt tgcggcttct gcaacaaaag gatcttccgc tggtttttta gcttctggat
    19681 ttgcgccgtc ctccgcatcg ccgtcgctac catgactatg caggaaattc tctcttacgt
    19741 cagcccattg atcttctggg ataccaataa aagtataatt tacttgagtc agtcgggcaa
    19801 tactcgatgt gatggtttca acaaagttcg gattatccat cgccatttga cagtgaatct
    19861 catgcttaaa ttttaacaca aaagtgtcct gagatgcagc cacaggttct gcgtcattta
    19921 aaagtgctgc ttgagatgcc atcaacattg ataataactc gccccaacaa ccacggatta
    19981 actgtaaatt ctctttctta gcctcaccta gcacatggtt gattttacca ataggcgctt
    20041 taaattgctt gccgttgttg attgcttttt tagaaccacc gcgattttgg gttggtttat
    20101 cggctggcgc tgctccagcc ccgctggcaa tttgtttttt cagcgtttgt atctcttgat
    20161 gcatttgctc catttgacgt tttaagtcag agacatcact tccagaagct gcatctgctg
    20221 gcacattccc gccacctgca actgatttac ccgcctgagt taactgaaca agcgccactt
    20281 ccacataaat acccggatga ttcgagaaac gcatttgttg ctgagctgta tttaaaattt
    20341 tcacgaactc atacacttta agtgaatctg ctcgttttgc caaagcaaca aaatcatcat
    20401 caatcaaagc tcgttccagt gtttcttcca gattcggcgc tttttgatac agcagcacat
    20461 ctctaaagaa tacgagtaaa tcttccacta agcgaaccgg gtctttccct tctgctagca
    20521 gtgctgtcag cgttgaaatc gcttctgctg catcgccgtc aaacgctgca cttactagtt
    20581 ttgtaaggag attttgagca accgaacctg ttatttctag cgcgtcttcc actgcaactt
    20641 cttctgaccc gtaagatata acttgatcga gcaaactaag cgcatcacgc attccacctt
    20701 cagccgcacg cgcaacaatc atcaacgctt tttcatcata agggattttt tcttcttcca
    20761 aaataaattt caaacgacca ataatatctt gtgtcgtgat tcgtttaaaa tcaaaccgtt
    20821 gtacccgcga aataatcgtt agcggtaact tatgcggttc tgttgttgcc aaaataaaaa
    20881 tgacatgttt cggcggttct tccagcgttt ttagtagcgc attaaacgct cccgtcgaca
    20941 acatatgcac ttcatcgata atatatactt tatatttcgc cacagttggc gcatatttta
    21001 ctttttcccg gatatctcga atttcttcaa ccccgttatt actggcagca tcgatttcaa
    21061 gaacatctgg tatagaaccg tccgtcgtac ctttacaaat ctcacattca ttgcaaggct
    21121 ccccgtcatg gccgtgttca cagttaatcg ccttcgcaaa aattttcgcc gcactagtct
    21181 tccccgtccc ccgaggccca gaaaataaat aagcgtgcga agttttattt tgcacaatgg
    21241 catttttaag cgttttcgtc acatgttcct gtccaacaac atcctgaaac gactgcggcc
    21301 gaaaaatccg atacaaagcc tgatacgcca tctgccactc tccttcacct aaaaccattt
    21361 tagtagtttt attataacgt attgttgaag aagtttcaaa acgttgtttg ttttgatcta
    21421 cttcttcaat ataaatctga gcaaagcgat gatttaatcc ttaccagaag tttcaaaacg
    21481 tcctgagccg ggctagcttc aaaaaccacc accaccaaaa atcaaaaatc aaaccccaaa
    21541 aaaagaacca gacccccgaa aaagcccgat tccaaactct tactgttcac ttttagcagc
    21601 caatttctcc tgcttctgct tactctcatt aataaccgaa agctcaatcg atttcagcaa
    21661 gttttttaca cgttttttac ggaagaagcc aaacataaaa ccaacaataa tattattcat
    21721 tttatttaac gctttttccg tttcgattaa ttcgttatag gtcacttcgc atgtagtttc
    21781 gctagtggat tttatcgtat acgtcgtcgt atgagtgttc acacggctgc tcgtttcgaa
    21841 ttgataaagt tcgttaggtt gcactttaac aatttttgtt gtagcaagtg cgccattaga
    21901 catcgtacgt tgatatttat atccttctaa ctttcgtact tgaagcgtct taccagtggc
    21961 attttttaca tcatagattg ctgagctaac tagtgtatca aagcattctt tttgggatat
    22021 atataatttc tgtgtgacat tcacttttta atcgactcct tctaattctt ttctttctta
    22081 tctttacgga tttttagcac gatgaaaaca cagccgatta aaacaaccgc aagtcctgta
    22141 actagaagag gtacactagc catcccatct tttccataag aaggactaaa cataataata
    22201 ataagaccta tactaataag aaatagtgca ttaacaattt tcattttcaa cccacactaa
    22261 cttggaaata gagtacagag cctatttcag ttgcttttat tgtttctttg gcgatttttg
    22321 ctgccttttc ttcgtcttca atatttgttt caaaagtaag tttcatacct ttttcgtcta
    22381 tttttttaaa agttacaccg tctttatcat atgtttcaag taattcagta atgtaatctc
    22441 gcttcattgg acaattaaga ataatcattt aaaaaaacct ccttttctat agtttaacgt
    22501 tatctttcgc ttcttgcaat gaataaaaat ggtgcaggaa ttcctacatg atatactggc
    22561 taggcacaat ttagctgcac ctagccagaa acttattatt ttctaagctt tcatctcttc
    22621 ttctggtaca ccaacgcgat ttgcggtaat aacaaatggt acccaaatca agaacgcgac
    22681 gaccatattt atgagtgaaa ttactggtgc catccaatct cccccggttg ctaagaagga
    22741 attcagaagt ggcggcatta cccaaactac tgcaatttta actgggccga caatgccaag
    22801 tgttgttgca aagtaagcga ttgttaccat taccattggc gcgataagga atggtattaa
    22861 gtaaattgta tttaatacga tcggtaaacc aaacatgatt ggttcgttaa tattaaatat
    22921 acctggtgca agagacaatt tcgcaactgt tcgtgcatcc gctcgtttcg agaacattag
    22981 taatgcgata atcagtacta gcgtaccgcc tgatccaccc atccatacat acgcatcgaa
    23041 agaaccacgt acccattcga atggtaattt agcgccttct tgtgccgcac taatgttttg
    23101 tagttgtgct gtaccccaaa gtgattctag aaccggagca agtacgttcg gaccatgaat
    23161 cccgaagaac catagtagtt gtactaagaa agtaactagt aaaacagctc cgtacccttg
    23221 cgaaagtgat aataacggct cttgaattgt tttggaaatc caagtaataa cgtccatatt
    23281 tgtgattttg aagaatgccc agtcaataat accaacaaca taaagtgcaa ctaacgcagg
    23341 aataatcgcc gcgaaagctt tacttacagc cggtggaaca gaatctggca ttttgataat
    23401 aatatttctg cgcattaatt tcgcataaat aatagttgat ataaaaccga aaatcattgc
    23461 ggtaaacaag ccggtaccat ttacttggct taggctaaag aatccgtaaa ttccagcaaa
    23521 ttcttttggt aaagtagcta catcgaaatt tgcattagaa gccgcaatcg cagcttttac
    23581 tgcatctaag cttacagtaa cagttaagtt cataacaaaa gcagcaagag aaactagccc
    23641 cccagctaat cgatccactt catatgcttt tgataaatta taccctagtg aaaaggcaaa
    23701 aataattgaa acaattgcta atgtcccatt gtatacatat ccattaatcc cgataagtgg
    23761 ttgcattgct tccacaaatc ctgtccatcc ccagtcagtt ggaaaatccc taaaaaacgc
    23821 atttaaaagt actgcaattg acccagccat agtgattggc attgttgaaa taaaagcatc
    23881 acgtaatgca actagatgtt tttgtgaacc aattttcgct gctactggca caaaatactt
    23941 ttccaaaaat gctgttaatc cattcatatt ttatcctccc gtaaaccttt ttatttaaca
    24001 ctcatctttt aaacaaaata taatttctat gtataaactc cctttaagtt tatcagctat
    24061 atctgtttac tttgtcctag taatccccat tactaaaaca aaccagatgg aatctttgca
    24121 tgacctcgtg aaattttggg agccctcctc tccgcttcat gataaggctt acatttagat
    24181 tcaccttaat ctattgcaat ttccgtgcca agtactaaat ttggaaaaaa catcctttaa
    24241 tctcttgaaa gccttgtctt tcttgccttt aaacttgtat tacacacata cagaaaaaaa
    24301 ctgtgtaagt aagcgttaac attacacagt ttactaattt atccattctt ctttctgtgt
    24361 tataatgagc ataagctaag taataccaac aattcgaggt gataaatatg gcagtcaaac
    24421 gagatatgcc ggaagagtcg aaaaatagta aagttgtgaa aaaagagcat ttttcgattg
    24481 tgtttcctga tgatataaaa gaaccaaaaa atgcgagtga acaaaaaaag caagatgttg
    24541 aaaagaaaac agatgataat taataaaaaa gagcatccgc ggggatgctc ttttttattt
    24601 aatagagaag ataaccattt ctttatcctc atcaattcgg acatttacgt ccatgcctaa
    24661 tttatcttta aaaagtgccg taatatttag atagtcatca tagctaccga tatcactttt
    24721 ttcgtatcct tgtagaattg tcggcttgat acgcacaatg taatcatcat ttga
//
LOCUS       DASDXX010000020        24299 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.020, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000020 DASDXX010000000
VERSION     DASDXX010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 24299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24299
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.020"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..330
                     /locus_tag="U0280_000660"
     CDS             <1..330
                     /locus_tag="U0280_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270617.1"
                     /translation="HMNNKLIFENQEYTFEYPIQTLREDKNHVYVLLDIPANQEYTFD
                     DFHNIYAFSYTGERKWQIGERPVGDNDVYTLINVKEGILYATDFSGRKYKVCEKNGIP
                     EKMEIVK"
     gene            456..797
                     /locus_tag="U0280_000661"
     CDS             456..797
                     /locus_tag="U0280_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270618.1"
                     /translation="MKKLQWLTNRLFATSILLITTLFIIPPTFAIADGSKVSFYEYIY
                     GAPFRWLTVISTTDKKGAFTEMFFSGNEGITIQWPNLMINFLLIFLAITIIFSLAKKL
                     YDKKNVKKDNP"
     gene            complement(864..1232)
                     /locus_tag="U0280_000662"
     CDS             complement(864..1232)
                     /locus_tag="U0280_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2270619.1"
                     /translation="MAFSIGEFSELVGIPSSTLRFYEKEGLITPDRDKNNLRIYSEED
                     ANWLKFLLHLKGAGLSVEELKQYTIWRAAGDSTISERLNMLKKKKVILEQEIEDLQKN
                     LDTVVRKIGIYEEKVKTRRV"
     gene            complement(1288..2271)
                     /locus_tag="U0280_000663"
     CDS             complement(1288..2271)
                     /locus_tag="U0280_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2270620.1"
                     /translation="MKKRQLGNTGLVTSELGFGCMGLNYHWGPAKDRKEMIEVVRTAM
                     DTGITMFDTAEVYGPYTNEELVGEALVGKRNHVQIATKGGFKINGLNNEVDSRPESIK
                     AAVEGSLKRLKTDYIDLYYIHRIDPSIPIEEVAGTIQNLKQEGKILHWGLFEASAKTI
                     RRAHKVEPLAAVENEYSIWWREAEKEIFPVLEELGIGLVAYSPLGRGYLTGKLDINAN
                     FNENDNRGGLPRFQKEAMEANQVLLDFMKEIADEQNVTTAQLAIAWILDQKPWIVPIP
                     GTTKQSRIKENIASTDIRFDDGARQKIADALSQIEIVGDRYSAAENKRIGK"
     gene            2662..3351
                     /locus_tag="U0280_000664"
     CDS             2662..3351
                     /locus_tag="U0280_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2270621.1"
                     /translation="MKYIDYHDYMHKDAIIYAYLQNNFPYIRKRIKAWESFTLDREDI
                     LLVKSGAIFEEISGKKKGIARCFFSKSLIFPTRNQIVLKAFETSEICFINAETAFGKL
                     EKDQILSNFFLQIAEKNEEDMRRQAFLGTENSKNKIISTLNFLLENNKSNNKTPIFPE
                     WLQINVLAQLANCSISTISSTVNELHAEGILDIKSSPWKLKGREKRIEILENEHQKIK
                     LNERKHKSNVF"
     gene            3428..9307
                     /locus_tag="U0280_000665"
     CDS             3428..9307
                     /locus_tag="U0280_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEM2270622.1"
                     /translation="MKKNILVVMIVSVLAISAIVSAFFLMRDDAYAIETEGFTYSPKG
                     KVVDFSSEAKYNDTWINNEKTITDKKEMKPINLARTLFLKDGRIQFLGKSVAVKSASD
                     LIELPSKTSITESKGSYKAKSDSNKTLAQLPKGTVVKLAEGRYIILDNAYLKNKQGLN
                     KKLPKNVLVSIDENKKVTLMGDKTIEELGGDDAYIEMENNHYHFDLKKEMLVSQTAKE
                     TDIDIRSIKVEIDDNAEKRSLKTAKETANETTKDSTQKEPEKQSNDTSGQKTTQNNET
                     SEGKDNQTQGASGNNANGNANNNTARSNGTGGSDSGANGSQPGGTQNKPNEGDVNKAN
                     EIIKKLNEAENTNTFQVPIVDVNLTVKGQVATAKLKLTDSSKRLNSLEAILYDSKNNI
                     VKKEKLNSTKANQNFTFNNLKYGETYQVVVQGSYKSASNKNQDTIFFRQTVEAKPVVL
                     TPKVTERGEDYMKAELTATELYGQIDKLVLKIKENNSNVTTSQKVTVDASQLTKDGQV
                     EVKFNSLSSAKEYIIEMEELIVDGKNVTDDSWYFISSTLKAKPTIEGINLSYSTDKGE
                     FVASPVNLIDRDESITSIRYVAYLEDDYKANGSNAKEYAYSVVDANQKKTAVKVGRTV
                     DMNDGSYIFVGYISGNNGQSDYTFATPASNSVIVGKKTKPTVEFSLKEAEQDKLTINY
                     EIFDADNTLLFDNLTHPTLKLYKSDAQGMYSGNPVATVDLTKKSDITNLLEFDGLESE
                     AYYVVVMTGSYNLDDGAGIMVDELIGQSSVFRTTEITKVNASFSLDSVDTTKATINVK
                     LSEAAVNLNDANLKIYEKKTNTLVKTIPLHGDFEKLMSDLGNSYPFKDLSINKEYLVK
                     IEDGYDSGMNHVPVEGQFIFKTKKEAPETDKVLLDYKASEMKLGGLAGIAATEKPLID
                     DYNAVSSITYSIYKADDLNTPLVEQEVSTAADFEKHVYFDLTNKLLGRGYSYVIKADV
                     VWNDNYEDHHIEINSDTIQIKKEKPTVEYEILSRTASEIKLNVYVEDEEESIVPGTLE
                     ITSTTGGNEQLQSGKNNVTLPLSSEGTTTIKTTGDYIITSGSSAISDIFMTKQLAALN
                     TTAPQVGAKIAMDASGKSMTIAPEPNAVAKTSVMRTKYDLKDAASSKPDYSITKSGPN
                     QFNTQNLNLPIGNIWFDNSYQLTLDMKMNYTENKIDNQNLANNYYLSIGNGASFVSSL
                     SGAVSTTNNVNSADVFKVTKASTDSEGNISGVTFKNIWTDKYIAYRNGILISNSETPD
                     SFKLIRQADGSYVPELSGRYVSFSVGLVTDEAAGSKIDLYSTQEKLEQVSEAISVKAL
                     EEPAISAENISVYDKRVKIDVIGEDKDNTTVKKDNKNELFVNVYKADGTTLVKSIRID
                     GLPTRDVSVTELSPDSDYVVKVEGKYDLLDGKGEKDKVYFSETIKTEKSLPSMTSTDY
                     SWNPAYGQRAIKGNIHFTDESSVLTNIEYRLYDAATISSNLSNLVALEQELGNKTPVA
                     TFDNMTNSPEFSIYNSSGAQNFVSGKTYVIAAYMKTSLTRAPIFLSDAKELYISPPSG
                     VSAPITLENVSTREATLKFSYNDPQSYFVGGTNKEFQYVLKNTTNGKEIKKGSFQGGN
                     TASWINTFEELEPATGYTLTISTQYDNLNGGLVRAWNTSFNFTTDDEYVTSNSLTIQL
                     DAGAKVVKLQAKEVKPGSTTIENIKMEFYELIDYGGNNEHNQLVETKNITLPSSYPAT
                     IAADFNVAGKKKNQSFLGKMIVTYRTPTNEVKTYEKTSNFITLQEDIAAGLKAFKSVR
                     ATNKTLEVKLDTPQVNLTDKGDYTYELKGENGEVIDTEKVAAEDISKTVSLSMEPTSD
                     YTLTVINPDNQPVALYQGNNEENNLKAEINKDSFTLMSNNTADAETTMTVTVEPKELT
                     AWQTVQSWFGKDFTETYNIQKDELDTGVKIDANYQDTKVTVEETKSGKNFGIIELEES
                     K"
     gene            9304..11613
                     /locus_tag="U0280_000666"
     CDS             9304..11613
                     /locus_tag="U0280_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270623.1"
                     /translation="MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVL
                     NNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNEIMESTILYLNKEALMFTKSVPV
                     IDTNGVSSKLKGRQVYQQTNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEI
                     KKVSKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLA
                     SFGGTDNEKIVVKEDKKKTAESAKEKESAKKTASNSSQSENESNQTTKGTGNQLNATK
                     KYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSDLNEIDNYEAILRKIEDLN
                     KKLERNIPVLRIGYIAPGVTSVKVNYNYVDPNNTLIGVTKISAVDEKTGKTVNTQYVS
                     AVDTEATLKGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVT
                     STTMKVNIALDAQIDDVKRARIKVTKADGDFFYMNVSANFLNGNGETLNVTGLSPKTA
                     YQFQTIIEMKNGETIELNSSEKYYTMQATVLRNLRASQSVNKVLQVQYDWSSADYTLN
                     QATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTKRELINLKAKLVLKTTNNNTKESKT
                     FEYPVKQEIEYDKQAKLTMDLTPFQTEENSELQSEKQDLVAEKETNGNDLTAKMEDVL
                     APQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWTVWKSQQVTTDEAGQVKVTET
                     ISKLAKESFDYRVAVYDAQGALQLYVYQK"
     gene            11670..11912
                     /locus_tag="U0280_000667"
     CDS             11670..11912
                     /locus_tag="U0280_000667"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463621.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. Subunit C is part of the
                     membrane proton channel F0; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit C"
                     /protein_id="HEM2270624.1"
                     /translation="MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNA
                     KKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI"
     gene            11924..12955
                     /locus_tag="U0280_000668"
     CDS             11924..12955
                     /locus_tag="U0280_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM2270625.1"
                     /translation="MEKMIQTIILYSVFAVGFLYLLHFTLRKLENILTSFFYEVSQDQ
                     SLEKESLLRRLKRQKVATTQEEQKNRQLAIESEQKEELFLEEIDQLIAQNKSYEQQLQ
                     AWENEKPKQIVEVPRFETTPHAPYKSLSSYINEIFQQVFIESEEDEARLFTEAIREFD
                     ALVRTEKIRCALPYKVILQLFEMYSPDQLHLFAQSFQRYSERSSKLPVKQIYQSSYLS
                     PEQKLKVMQEEGTLDELDAEFIQFLFYMMTHYSYRQTRNLYRNFLEVYNIHFYTGLIC
                     IHVASKDSANHFEKLWQPAHRSYKIEYQVQKELIGGVIIQYGSKSIDMSYQELIKRST
                     EKMEAEVKL"
     gene            12952..14448
                     /locus_tag="U0280_000669"
     CDS             12952..14448
                     /locus_tag="U0280_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM2270626.1"
                     /translation="MKTIHFDMNKYETHVDLEYLKEHGRVEKISDGVIFCSGLENAAL
                     HQAVLIDERHRGVILELNEEFVGIGLIDKTNDILEGMHVGVSGKFIEVDLFEEMAGRV
                     IDTTGKMLYEESEEKPTATSPLFCVTPAIMTIDSVTRPLNTGLAVIDSITPIGRGQRQ
                     LILGNRQSGKTQIAVDTIINQHDQNVHCIYVAIGLKAAYIAEVIETLRNHGAMEYSTV
                     VATAASDSLTAQYLTPYAGMAVAEALRDQGKDVLIILDDLTKHADAYRAITLLFNRPP
                     GREAYPGDSFYIHSSLLERAVQMNEEHGGGSITAIPMIETLSDDVTAYIPTNVISITD
                     GQLFLKSDLFNRGQKPAVDVGVSVSRIGGDAQHPIIRKLSKNLTLILSQFEELKELLD
                     FGNALDDGSMKMVSDGRLLTELFKQKILSPLSVTELIVILYAFQNGFLTKIPPANIQT
                     FKDLLLEKTHMHKDFESFSAQIETINELNESHIEMLEEIIREAGRLFS"
     gene            14445..15314
                     /locus_tag="U0280_000670"
     CDS             14445..15314
                     /locus_tag="U0280_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM2270627.1"
                     /translation="MSSIDQARKTIKALNSTYKIVHVTELATLGKLSALREKAEAAVS
                     YYETILKSLRWVRKTMYTSNNQVKEEKNVTAIAITSERGLCGAYNSEVFVEIDQLIES
                     LGEQVTINWVVVGEQGHRYLTKLGQNITSYLQFSLENIDLETTTAVTADFIDLIHSEQ
                     MDALYVIFTKYLNAVQSEAMCEKIYPEIPEDSNTEEIEVDYVLDFETDDEQVEQLLLE
                     NYLCGLLYSMFRYSVASEYCMRRIAMKQAKDNIQKQLEEAIFNARKQALQQKTGELLD
                     IISGAQTIRKDEE"
     gene            15315..16685
                     /locus_tag="U0280_000671"
     CDS             15315..16685
                     /locus_tag="U0280_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM2270628.1"
                     /translation="MKKNTGTIISISGFVLKIEFNESELPEIGFALEYHTHQGTYLAE
                     VVQHTGINTVSAIAIGEVSGLARGTEVVNLGHPIEVPVGETVQGRMLNVYGKAIDGKP
                     EPAAEVKWPIFRDQPLLRELDTNKEILYTGIKVIDLICPILKGGKTGLFGGAGVGKSV
                     LMQELINNISMLGGNSVFTGVGERVREGIGLYKELEASGVLPQTTVVLGQMNESPGVR
                     MRVALTGLTIAEYLRDEEKKDVLLFIDNVFRFIQAGSEVSSLQGKIPITGGYQSTLSK
                     EVGDFQDRIASTKNGSITSIQCVFLPADDIDDPSAVATFSHLDSTIVLERSIAALGIF
                     PAVNPLQSFSRALNPTFVGERHYQLAAQVKFILQRYMELQEIINVLGMAELSDEDRKL
                     VHRARKIRNFLSQPFYVSEKFTGTEGTFVEIEDLLGSIERILNGDYDERSERDFLFIG
                     SYKDLK"
     gene            16698..17030
                     /locus_tag="U0280_000672"
     CDS             16698..17030
                     /locus_tag="U0280_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM2270629.1"
                     /translation="MKLKIVSPMGQFFEGEVEGFVINTKEGQQTVLEEHIDCLSFFDY
                     SEISILDAVASDPIFVALGYLHLVQNEANIMAQFASTDAEQAERIFERLNKRKQTESR
                     RSDDKRIF"
     gene            17011..17571
                     /locus_tag="U0280_000673"
     CDS             17011..17571
                     /locus_tag="U0280_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270630.1"
                     /translation="MTSEFFSTLLLIIGLLLGFFLAILLILVGIRRFLCSAEEPLKRI
                     QRYQLWHNRYQLNAEVTSFLIVIGASLSVSLITLQITAIPFQYTVLIFWSSWLFHLLS
                     FWKKIRVPKKMKNEMKQLAGFLLITVLYFVGFFAMKSVHFSIIQVADFPGVIQFGIRT
                     YLTICSFFVACGALIVWQRIYVKLLK"
     gene            17746..18378
                     /locus_tag="U0280_000674"
     CDS             17746..18378
                     /locus_tag="U0280_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2270631.1"
                     /translation="MTFLEFHQLVKEDLLIYSWIIKNFHLTRQKLMAGGEITMNREQV
                     IVMEKGLLVQVNEEGKDDLYRVFIDQRIIFTTKGDITLTALEDTTYSIIRAEELIGKL
                     EDQHLLPTFFLEIAEDFEKGLDWQRTLISVDPAERAEMILAKIIERYQINSENKPEFP
                     RWLRINVLARFAKCSVSTMSSVVNELVNEGDLNIKGTPWLLTRPYQATCA"
     gene            18676..19641
                     /gene="manX"
                     /locus_tag="U0280_000675"
     CDS             18676..19641
                     /gene="manX"
                     /locus_tag="U0280_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM2270632.1"
                     /translation="MVGIILATHGEFAEGILQSGTMIFGEQENVKAITLMPSEGPEDI
                     KAKMEAAIASFDSQDEVLFLVDLWGGTPFNQANGLYELHKDKWAIVAGLNLPMLIEAF
                     SSRFTMESAHEIAANILAPAQEGVRVKPEELQPQVTATEQPQAEIAAVGDGKIEFVLT
                     RVDSRLLHGQVATAWTKATHPTRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPVQK
                     MIEISKDPRFGNTKALLLFENPQDVLRAIEGGVEIEQVNVGSMAHSVGKVVVSKVLSM
                     GKDDVETFEKLKEKGVKFDVRKVPNDSSANMEDIIKKAKHELKTQ"
     gene            19665..20471
                     /locus_tag="U0280_000676"
     CDS             19665..20471
                     /locus_tag="U0280_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM2270633.1"
                     /translation="MSVISIILVVLIAFLAGIEGILDEFQFHQPLIACTLIGLVTGNL
                     TACIILGGTLQMIALGWANIGAAVAPDAALASVASAIILVLGGQGVAGIPSAIAIAIP
                     LAVAGLFLTMIVRTLAVPIVHLMDRAAEKGNIRSVEWLHISAICMQGIRIAIPAAALL
                     FIPADSVQSFLEAMPAWLTDGMAIGGGMVVAVGYALVINMMATKEVWPFFVIGFVVAA
                     ISQLTLIAIGALGVALALIYLNLSKMGGGNSNGGGGGNSRDPLGDILNDY"
     gene            20493..21404
                     /locus_tag="U0280_000677"
     CDS             20493..21404
                     /locus_tag="U0280_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM2270634.1"
                     /translation="MAEKIELSKRDRLRVAWRSTFIQGSWNYERMQNGGWAFSMIPAI
                     KKLYKTKEDRSQALKRHLEFFNTHPYIASPILGVTLALEEERANGAEVDDVAIQGVKV
                     GMMGPLAGVGDPVFWFTIRPMLGALGASLALSGNILGPILFFVAWNVIRWGFMWYTQE
                     FGYKAGSKITDDLSGGLLQDITKGASILGMFVLAALVQRWVNIQFAPIISKVKLDEGA
                     YIDWSHLPQGAQGIKTALEQQQAGLALSEIKVTTLQNNLDNLIPGLAAVALTFLCMWL
                     LKKKISPIIIILGLFVVGIVGHLIGLL"
     gene            21531..21920
                     /locus_tag="U0280_000678"
     CDS             21531..21920
                     /locus_tag="U0280_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HEM2270635.1"
                     /translation="MVQSINTKVDLTIDATAYTGLTDYGKIMIGDKGFEFFNSRDVRK
                     FVQIPWEEVDQVIVSVMLKGKWIPRYAIKTKRNGTYTFASKRPKEVLRKIRVYVDPAN
                     MVSSLSFFDVMKRSFRSIFSKKKNKNK"
     gene            22042..22392
                     /locus_tag="U0280_000679"
     CDS             22042..22392
                     /locus_tag="U0280_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2200 domain-containing protein"
                     /protein_id="HEM2270636.1"
                     /translation="MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQ
                     DSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVD
                     ELAKGKKMEKILRK"
     gene            complement(22433..23950)
                     /locus_tag="U0280_000680"
     CDS             complement(22433..23950)
                     /locus_tag="U0280_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HEM2270637.1"
                     /translation="MRPTNVYTPEDIYLKDRTGFNNGNLAYQYSIYRALWNDDVEIHA
                     DGLSSNPNLAEKINENYDLYVMPLADAFRDDFRPVLRNYTQLIRKLKIPVIVTGVGLR
                     ANYEPQLDEGFSFDEDVTNFVKAVLEKSAQIGVRGQITADYLKKLGFNAELDFRVIGC
                     PSLYTFGREIKIRDFHLTDQSTIAINASPTSSEIAINFLNNMITTYKDYHFIPQHLDE
                     FHLMYAGGPDISSDINGYPTNIQHKYYQEGRVKYFTSMPSWFDFVKKVDFSIGSRLHG
                     NVIPTIVGTPNISFVQDARMRELASYHALPHVTIDELEKTNNLQELLTKVDLKSAEKV
                     QARNFDNYIDFLDTNGLNHIYKYDKNRKSAPMDELINSITFPTSPDPISILNPQEMLN
                     RVKISTNLLKERHDFSTRYRVNLVNNQLTQLKKTTSEQNKKYQQKITETQEKNQQLEK
                     QLTDTKQKLQLTINKNHELTNKIRHYQGTLNRKSVKTTLKVANSLANLKKKVSRS"
     gene            complement(24065..>24299)
                     /locus_tag="U0280_000681"
     CDS             complement(24065..>24299)
                     /locus_tag="U0280_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2270638.1"
                     /translation="DPIRLDIFLCLLKSKEKRFSGTTYNISKSTMSHHIKLLKEAKLI
                     NLRKEGTTHIYSVNEALVEEIGYFFDACKHNHK"
BASE COUNT         8413 a         4016 c         4810 g         7060 t
ORIGIN      
        1 catatgaata ataaattaat ttttgaaaac caagaataca catttgagta tccaatacaa
       61 actttgagag aagataaaaa tcatgtatat gttttattag atataccagc caaccaagaa
      121 tatacgtttg atgattttca taatatttat gctttttctt atacgggtga acggaaatgg
      181 caaataggag agagacccgt tggagataat gatgtttata ctttgattaa tgtaaaagaa
      241 ggaatacttt acgctacaga ttttagcgga agaaaatata aagtttgtga aaaaaatgga
      301 attcctgaaa aaatggaaat tgtaaaataa aaaatacatt ttactgtctc gttcagaacc
      361 cttgcaaccc atatttaaaa agggcctaaa tgttttagca atgtttttat aaaatcccaa
      421 attggaaaac caaccttcac ccaaaaggag ctaacatgaa aaaactacaa tggctaacta
      481 accgattatt tgcaacctct atcctcctaa tcaccacgtt atttatcata cccccaacat
      541 ttgcgatagc tgatggaagt aaagtgagtt tttatgaata catatatgga gcacctttta
      601 gatggctaac tgtaattagt acgacagata agaaaggtgc atttacggag atgtttttct
      661 cgggaaacga gggtataact atccaatggc ccaatctaat gataaacttt ctcttaattt
      721 tccttgcaat aactattatc ttttccctag caaaaaagct ttacgataaa aagaacgtca
      781 aaaaagacaa cccataacag gttgtctttt tctatatgct gttgtaaatg gtctcttact
      841 gtacacgaga aaaattcacc tagctaaact cgtctagtct taaccttctc ttcataaatc
      901 ccaatcttcc taaccactgt atccaaattc ttctgcaagt cttcaatctc ttgctccaaa
      961 ataacctttt tcttttttaa catatttaat cgttcggaaa tagtgctgtc tcctgctgcg
     1021 cgccaaattg tgtactgctt taattcttct accgataacc cggcgccttt taagtgcagt
     1081 aaaaatttta gccaattggc gtcttcttcg ctgtatatgc gcaaattatt cttgtcgcgg
     1141 tcaggggtta ttaagccttc tttttcgtag aatctaaggg tgctactggg aatgcctact
     1201 agttcggaaa attcaccgat agaaaaagcc atttaatcac ctcatctgtg tgtttttcat
     1261 aaggatacca ttttgaatag gaaatgccta ctttccgatg cgtttatttt cagctgctga
     1321 gtatctatca ccaacaattt caatctgcga taaagcatca gctatttttt gtcgtgctcc
     1381 gtcatcaaaa cgaatgtccg tggaggcgat attttcttta attctgcttt gttttgttgt
     1441 tccgggaatt ggcacgatcc aaggtttttg gtcaagtatc caagcgatgg cgagttgtgc
     1501 cgttgtgaca ttttgctcgt cggctatttc tttcataaaa tcgagtagta cttggttggc
     1561 ttccatggct tctttttgga atcttggtaa gccaccgcgg ttgtcgtttt cattgaagtt
     1621 agcatttata tccaatttgc cagttaaata accgcgacct agtgggctgt atgcgacaag
     1681 cccgatgcca agttcttcta aaaccggaaa tatttctttt tcagcttctc gccaccagat
     1741 ggaatactca ttttcaacag cagctagtgg ctctacttta tgagcacggc gtattgtctt
     1801 tgcgctggct tcgaaaagtc cccagtgtag aatttttcct tcttgtttta aattctgaat
     1861 ggttccggca acctcttcaa ttgggataga ggggtcaatt ctatgaatgt aatataaatc
     1921 aatgtaatcc gtttttagcc gtttgagaga gccttcaacc gcggccttga tgctttctgg
     1981 acggctatcg acttcgttat ttaaaccatt aattttaaaa ccaccttttg ttgcaatttg
     2041 aacatggttt cttttgccaa ctaaagcttc tccgacaagt tcttcattag tataaggtcc
     2101 gtacacttca gcagtatcga acatcgtaat ccctgtatcc attgcagtgc gtacgacttc
     2161 aatcatttct tttctatctt tcgcaggtcc ccagtgataa ttgagtccca tacagccgaa
     2221 tccaagctct gaagttacta aaccagtgtt tcctaattgt ctctttttca taaaaatatg
     2281 ctccttttaa accaaatttt taaattagaa atatcaggat gttgtattta gtttatcagt
     2341 tgaagtgaac tttaagtcaa gcgtaactaa tttattttta agagcatgag atagtttaac
     2401 aaaagcgatg attaatttta ttttattgat gggggcttat tctttgttct tggaaggaaa
     2461 aattgcataa aagctgtctt aaataagcgc taggaacgat tttagtagtt ttaatagtac
     2521 taatacatca agaaatgtta cgaaaaaatg tcgacaaata ctcaaaatca cgtaaatcag
     2581 ttgtaaatga gtatacgaat taaacgtatt ttctaagata ataatattta tgatggaaat
     2641 tcagaaaggg tgataacaag aatgaagtat atcgattacc atgattatat gcataaagac
     2701 gcgataatat atgcttatct ccaaaataat tttccgtata tccgcaaacg aataaaggcg
     2761 tgggaaagtt ttacgctaga tcgagaagat attctattgg tgaaaagtgg cgcaatattt
     2821 gaagaaatta gtgggaagaa aaaaggcata gcacgatgct ttttttcgaa aagtttaatt
     2881 tttcctacta gaaatcaaat agtattgaaa gctttcgaaa cttcagaaat ttgttttatc
     2941 aatgctgaaa cagcttttgg gaaattagaa aaagatcaga ttttatccaa tttttttcta
     3001 cagattgcgg agaaaaacga agaagacatg cgaagacaag catttcttgg gacagagaac
     3061 tcaaaaaata aaattatttc aacgctcaac ttcttgctag aaaataataa atctaataat
     3121 aaaacaccca tctttcctga atggcttcaa ataaatgttt tggcacagtt agcgaattgt
     3181 tccatctcta ccatttcttc tactgtaaac gaattacatg cggaaggaat attagatata
     3241 aaatcttcgc cctggaaact taaaggcaga gaaaagagga tagaaattct tgaaaatgag
     3301 caccagaaaa taaagcttaa tgaaagaaag cataagagta atgttttcta atggtataag
     3361 acttgaaaaa actttttgag tacttttcca agcacaaaaa ttatactaaa agaggtggaa
     3421 gtaggacttg aagaaaaata ttttagtcgt aatgattgtt tcggtacttg caattagtgc
     3481 aattgtatca gcttttttct taatgagaga cgatgcttat gctattgaaa cggaaggctt
     3541 tacttatagc ccgaaaggaa aagtagtaga tttctcatca gaagccaagt ataacgatac
     3601 atggattaac aatgagaaaa caataacaga taaaaaagaa atgaagccaa ttaacctagc
     3661 aagaacgtta tttttaaaag atggacgaat tcaattttta ggaaaaagtg tagccgttaa
     3721 aagcgcatca gatttgattg aattaccatc caaaacttct ataacagaaa gcaaaggtag
     3781 ttacaaagca aaaagtgata gtaataaaac attagcacaa cttccaaaag gcacagttgt
     3841 aaaacttgca gaaggaagat atatcatttt ggataatgcc tacctaaaaa acaaacaagg
     3901 tcttaataag aaactaccta aaaacgtact tgtttccata gacgaaaata aaaaagtgac
     3961 tttaatgggc gataaaacca tagaagaatt aggcggggat gatgcttata ttgaaatgga
     4021 gaacaatcac tatcactttg acttgaaaaa agaaatgttg gtcagtcaaa cagctaaaga
     4081 aacagatatt gatattcgct ccattaaagt ggaaatagat gataatgccg aaaaaagaag
     4141 tctaaaaaca gctaaagaaa cagcaaatga aacaacaaaa gattcaactc aaaaagaacc
     4201 agaaaaacag tcgaatgata cttctggaca aaaaacaacg caaaataatg agacgtctga
     4261 aggtaaagat aatcaaacac aaggcgcgtc tggcaacaat gcaaatggaa atgcaaataa
     4321 caatacagcg agaagtaatg gaacaggcgg aagtgattct ggtgcaaacg gctctcagcc
     4381 cggtggtacg cagaataaac caaatgaagg cgatgttaat aaagcgaatg aaattattaa
     4441 aaagctaaac gaagctgaaa acacaaatac gtttcaagta ccaattgtgg atgtcaattt
     4501 gacagttaaa ggtcaagtgg ctacagctaa actaaaactg acagactcat ccaaaaggct
     4561 aaactcctta gaagcaattc tttacgatag taagaacaat attgtaaaaa aagaaaaatt
     4621 gaactcaaca aaagcgaatc aaaacttcac ctttaacaat ttaaaatatg gcgaaacata
     4681 tcaagtagtt gttcagggaa gctacaagtc agcaagcaat aaaaatcaag atactatttt
     4741 cttccgccaa acggttgagg caaaaccggt tgttttaact ccaaaagtga cggagcgcgg
     4801 cgaagattat atgaaagcgg aactgactgc aaccgaactt tacggtcaaa ttgataagct
     4861 ggttttaaaa atcaaagaaa acaacagcaa tgtaaccact tctcaaaaag ttactgttga
     4921 tgcgagtcaa ttgacaaaag acggtcaagt agaagttaaa tttaattcat taagtagtgc
     4981 taaagaatac attatcgaaa tggaagaatt gattgttgat ggaaaaaacg tgacagatga
     5041 tagttggtac tttatttcct ctacattaaa agcgaaacca acaattgaag gcataaatct
     5101 ttcatacagc acggataaag gcgaatttgt tgcgtcacca gttaatctaa ttgacagaga
     5161 cgaatcaatt acaagcattc gatatgtagc gtatttagaa gatgactata aagcaaatgg
     5221 ttctaatgcc aaggaatacg cttattctgt agtagatgcc aaccaaaaga aaaccgctgt
     5281 taaagttggt cgaacagttg atatgaatga tggtagttat atttttgttg gttatatttc
     5341 tggcaataac ggtcagtctg attatacttt tgcaactcca gcttcgaaca gtgtcatcgt
     5401 tggtaaaaaa acgaagccaa ctgtagagtt ttctctgaaa gaagcagagc aagataaact
     5461 gacaatcaac tatgaaattt ttgatgcaga taacacactt ctttttgata atctaacaca
     5521 tccaacctta aagctttata agtcagacgc tcaagggatg tatagtggaa atcctgttgc
     5581 tacagttgat ttaacaaaga aaagtgatat tacgaattta ctagaattcg atggtttaga
     5641 aagtgaagct tactatgttg tcgtaatgac aggctcctat aatctggacg acggagcagg
     5701 gattatggtt gatgagctta ttggtcagtc aagtgtcttc cggacaaccg aaattacaaa
     5761 ggtcaacgca tctttttcac ttgattcagt tgatacaaca aaagcaacaa ttaatgtcaa
     5821 attatctgaa gcggctgtta atttaaacga cgctaattta aaaatttatg aaaagaaaac
     5881 aaatacactt gtcaaaacga ttccgctaca cggggatttt gagaagttaa tgagcgattt
     5941 gggaaatagt tatcccttta aagatttaag tattaataaa gagtatcttg tgaaaataga
     6001 agatggctat gatagtggaa tgaatcatgt tccagttgaa gggcaattta ttttcaaaac
     6061 caagaaagaa gcacctgaaa cagacaaagt attgcttgat tacaaagctt ctgaaatgaa
     6121 attaggaggc ctagcgggaa tcgcggcaac ggaaaagcca ctgattgatg attacaacgc
     6181 tgttagttct attacctata gtatctataa agcagacgat ttaaacacac cgcttgtgga
     6241 gcaagaagtt tcaacagcgg cagactttga gaagcacgtg tactttgatt taactaataa
     6301 gctcttagga cgaggttatt cttatgtcat aaaagcggat gttgtttgga atgataatta
     6361 tgaagatcat catattgaaa ttaattccga tacaatccaa atcaaaaaag aaaaaccaac
     6421 cgttgaatac gaaattttaa gccgcacagc gagcgaaatt aaattaaatg tatatgtaga
     6481 agatgaggaa gaatctatcg taccgggaac gcttgaaatt actagtacga caggcggtaa
     6541 tgagcaactt caaagtggga aaaataatgt aaccttacca ctttcaagcg agggaactac
     6601 aacaattaaa acaacaggtg attacattat taccagcgga agttcagcta tttcagatat
     6661 ttttatgacg aaacagttgg cagcattaaa tactactgca ccacaagttg gagccaaaat
     6721 tgccatggat gcttcaggca aatcaatgac tatcgcccca gaacctaatg cagttgcaaa
     6781 aacttctgtg atgagaacta aatatgattt gaaagatgct gcaagctcca aaccagatta
     6841 ttcaattaca aaatctggtc ctaatcaatt taatactcaa aaccttaatc tgcctatagg
     6901 taatatttgg tttgataatt cctatcagct aacccttgat atgaaaatga attatacaga
     6961 aaacaaaatc gataaccaaa acctagccaa taattactat ctatctattg gaaatggagc
     7021 gtcatttgtt agctctttaa gcggagcggt ttcgacaacg aacaacgtaa atagtgcgga
     7081 tgttttcaaa gtaacgaaag caagcaccga ttcagaaggt aatatttccg gagttacatt
     7141 taaaaatatt tggactgata agtatatagc ttatcgaaat ggtattttga ttagtaatag
     7201 cgagactcct gattcattca aattaatccg tcaagctgat ggaagttatg taccagaatt
     7261 gagcggtcgc tatgttagtt tctctgttgg actagtaaca gatgaagcag ctggatcaaa
     7321 aatcgattta tattcaactc aggaaaaatt agaacaagtt tcggaagcta tttctgtaaa
     7381 agcacttgaa gagccagcta tttcagctga gaatattagt gtttatgata aacgcgtcaa
     7441 aatagatgtt attggtgagg ataaagacaa tacaacggtt aagaaagata acaagaatga
     7501 actgtttgta aatgtttata aagcagatgg aacaacgctc gttaaatcaa ttcggattga
     7561 tggactacca acacgcgatg tttctgttac agagctttca ccagattcag attatgttgt
     7621 taaagttgaa gggaaatatg atttgttaga tggtaaaggc gaaaaagaca aagtgtattt
     7681 ttcagagaca attaagacag aaaaaagttt accgagtatg acttcaactg attattcatg
     7741 gaatccagca tatggtcagc gagcaattaa aggaaatatc cattttactg atgaaagtag
     7801 cgtattaaca aatattgaat atcgtctgta cgatgctgcg acaatttctt ccaatttatc
     7861 taatttagta gctttagagc aagagttagg caataaaact cccgtagcta catttgataa
     7921 tatgacaaat agtccagaat tctctatata taacagttct ggagctcaaa attttgtttc
     7981 tggaaaaaca tatgtgattg cagcatatat gaagacaagt ctaacaagag cacctatctt
     8041 cctaagtgat gccaaggagc tttatatttc accgccaagt ggtgtttctg ctccaatcac
     8101 gctagaaaat gtttcaacaa gagaagcgac tctgaaattc tcttataatg atccacaaag
     8161 ttattttgtt ggcggaacaa ataaagaatt ccagtacgta ttaaaaaaca cgacaaatgg
     8221 aaaggaaatt aaaaaaggat cgtttcaagg tgggaataca gctagttgga taaatacttt
     8281 tgaggaatta gaacctgcaa caggatatac gctaacaatt agcacccaat acgataatct
     8341 aaatggtgga ttagtaagag catggaatac tagctttaat ttcactacag atgatgaata
     8401 tgtaacttcg aactcactta ccattcagct agatgctgga gcaaaagtag ttaaattaca
     8461 ggctaaagaa gtcaaaccag gatctacaac gattgaaaat attaaaatgg agttctatga
     8521 gctaatcgac tatggaggca ataatgaaca taatcaatta gttgaaacta aaaatatcac
     8581 tttaccaagt tcttatccag caactattgc agcagatttt aatgtggcag gtaagaagaa
     8641 aaatcaaagt ttcttgggta aaatgattgt cacctatcga acaccaacaa atgaagttaa
     8701 aacgtatgaa aaaacatcta atttcattac tttacaagaa gatattgccg caggattaaa
     8761 agcatttaag agtgtgcgag caacaaataa gactttagaa gtaaaattag atactccgca
     8821 agttaattta accgataaag gagattacac gtatgaattg aagggcgaaa atggtgaggt
     8881 aattgataca gaaaaagttg cagcggaaga tatttctaaa actgtatcgt tatcaatgga
     8941 gccaacaagt gattatacgt tgactgtcat taatccagat aaccagcccg tcgcacttta
     9001 tcaaggcaat aacgaagaaa ataatctgaa agctgaaatc aacaaagata gttttacact
     9061 gatgagcaat aacacagccg atgctgaaac tacaatgaca gtaactgtag agcctaaaga
     9121 attaacagca tggcaaacag ttcaatcctg gtttggtaaa gactttacag aaacttataa
     9181 catccaaaaa gatgagctag atacaggtgt gaaaattgat gcaaattatc aagacactaa
     9241 agttactgtc gaagaaacaa aatcaggaaa gaattttgga attattgaat tggaggagag
     9301 caaatgaaac ctacatggaa aatagggata atcgttgcag ctgttccgtt aataattatt
     9361 gctgtcgtct tatgggggtc ttttaaggag gcaaggtata atcttgtctc tctccctgat
     9421 gacggtgtag tcctaaataa tgagcaagag acattgcaat ttcaaaaggg caatacgctt
     9481 tatcgcagtt ggaatagtga tcaattaatt gcgaaaaacg ataaagaaga tactcgaaac
     9541 gaaattatgg agagtaccat cctttatcta aataaagaag ccttaatgtt tactaagagt
     9601 gttcccgtca ttgatacaaa tggggttagt agcaaactaa aaggaagaca agtctaccaa
     9661 cagaccaatt cttcctataa atacaaaaac tcagaaatca cggaaaacag tattgtaaaa
     9721 ctagcaaacc gtcaatacta tttaaacgca gatgcaacac tttatcttgg cggcaaagaa
     9781 atcaaaaaag tgtcgaaacc attacttttg attgataaaa caggaagcgt cactatttat
     9841 gaaaacaaaa agaaaagccg ttttcttggt catatgacct tgaaagtcaa tgataaaacg
     9901 gttttagatg ctagtaacga aacgtatact gttggcgaac ggaaaattga tttagctagc
     9961 tttggtggaa cagacaatga aaagatagtc gtaaaagaag ataagaaaaa gaccgcagaa
    10021 tctgcgaaag aaaaagagtc tgcgaagaaa acagcaagta actcctctca atcagaaaat
    10081 gaaagtaacc aaacaacaaa aggtacaggc aatcaactca atgctaccaa aaaatacgga
    10141 aataatttaa atgttggaaa tggaacttct gattcggaac caaacgatgg taaggatact
    10201 aaaaataatg gttcaggaag taatgcgaat ggtggtacta atcaatcaga tttaaatgaa
    10261 attgataatt atgaagcaat cttacgtaaa atagaggact taaataaaaa attagagcga
    10321 aacattccag tgctaagaat cggctatatc gcacctggag tgactagcgt gaaagtcaac
    10381 tataactatg tagatccgaa taacacttta attggtgtca ctaaaattag cgccgtagat
    10441 gaaaaaactg gaaaaacagt taatacgcaa tatgtttcag cagtagatac ggaagctaca
    10501 ctaaaaggac tttcgccaaa tggcaagtat catcttgaat ttacctatca atatgattta
    10561 ggaacaaata aaggcattca ggaagttaaa atgcaaagcg actcttttac aacgcaaact
    10621 gttgccgcaa tttatcaaat gcaaagcgtt acaagcacaa caatgaaagt aaatatagcg
    10681 cttgatgcac aaattgatga tgttaaacga gcaagaatta aagtaaccaa agcagatgga
    10741 gattttttct atatgaatgt tagtgcgaat tttttaaatg gtaacggaga aacgcttaat
    10801 gtaactgggc taagtcctaa aactgcttac caattccaaa cgattattga aatgaaaaac
    10861 ggagaaacca ttgaattaaa cagctccgag aaatattaca ctatgcaagc aactgtacta
    10921 agaaatctaa gagctagtca atctgtgaat aaagttttac aagtgcaata tgattggagt
    10981 tcggctgatt atacattaaa tcaagcaacc atcgaactgg aagacgagga agataaaaca
    11041 gaagtagatt atcaaatcgt taatcaagaa aaaggtaata ttcatcttgt tccagacacg
    11101 aaaagggagt taatcaactt aaaagccaaa ctagtactca aaacgacaaa taataacaca
    11161 aaagaaagca aaacatttga gtatcctgtt aagcaagaaa ttgaatacga caaacaagct
    11221 aaactaacaa tggacttaac gccgtttcaa actgaagaaa acagtgagtt acagtctgaa
    11281 aaacaagatt tagtagcaga gaaagaaacg aacggaaatg atttaacagc taagatggaa
    11341 gatgttttag cccctcaaaa cgcaacttat gatatgtcct tttcgatgca acgtaaagct
    11401 ctcgaaacgt atcagttgga atttgaaagg aagatagctg ggatagacga tgataattgg
    11461 accgtgtgga agagtcaaca agttacaacg gatgaagcag ggcaagtgaa ggttacagaa
    11521 accatttcaa aactagctaa agaaagcttc gattatcgtg tagctgtata cgatgctcaa
    11581 ggtgcattac aactgtacgt ttatcaaaag tagtaaaaaa tgatatgcat tttaatacaa
    11641 caaactcaaa cagaaggtag gaaacaacaa tggatttagt agttgcatgt agcgtaattg
    11701 gcgcggcact ggcaattggg cttgcgactt taggagcggc aattggacaa ggaattgccg
    11761 taagtagagc aacagaaatt atcggaaaaa acccgaatgc aaagaaagaa gttatgggag
    11821 gtctcttttt gggacttctc atgatagttg cattaatgct atttgcactg gcaatcgcag
    11881 tcatcttgct ttgggttaat ccgtttatat gatgggtgag aatatggaga aaatgattca
    11941 aacaataatt ctatatagtg ttttcgcagt aggattctta tatttactgc atttcacctt
    12001 aagaaaacta gaaaatatct tgactagctt tttttacgaa gtgagtcaag atcagtcgct
    12061 tgaaaaggaa agtcttttac gccgtttaaa gcgacaaaaa gtagcaacaa cacaagaaga
    12121 acaaaaaaat cgtcaattgg ctattgaatc ggaacaaaaa gaagagcttt ttttagaaga
    12181 aatcgatcaa ttaatagctc aaaataaaag ctatgaacaa caattgcagg catgggaaaa
    12241 tgaaaagcca aagcaaatcg tggaggtgcc tagatttgaa acaacaccac acgcaccgta
    12301 caaatcacta agtagttaca ttaatgaaat ttttcaacaa gtttttattg agtcggaaga
    12361 agatgaagcg cgtctattta cagaagcaat tcgggaattt gatgcattag ttagaacaga
    12421 aaaaatacgt tgtgcgctcc catacaaagt gattttgcag ttatttgaaa tgtattcgcc
    12481 agaccagtta catttatttg ctcagtcatt tcagagatat agtgagcgtt cgagtaaact
    12541 tcctgtgaaa caaatttacc aaagtagtta tttatcgcca gagcaaaaat taaaagtgat
    12601 gcaagaagaa ggtactttag atgagttaga tgctgaattt atccaatttc ttttttacat
    12661 gatgacgcat tactcttacc gccaaacgcg gaacctgtat cgtaactttt tagaggtata
    12721 caatattcat ttttatacag gtcttatttg catccatgta gctagcaaag attcagctaa
    12781 tcactttgaa aaactttggc agccggcgca taggagctat aaaatcgagt atcaagtaca
    12841 aaaagagtta attggcggag tgattattca atatggttct aaatcaattg atatgagcta
    12901 ccaggaatta attaaacgat caacagaaaa aatggaagcg gaagtgaaac tttgaaaaca
    12961 attcattttg atatgaacaa atacgaaacc catgtggact tggaatattt gaaagaacat
    13021 ggccgagtgg aaaaaatttc tgatggagtt attttctgct caggcctaga aaatgcagcg
    13081 ctacatcagg ctgttttaat tgatgaaagg caccgaggtg taattctgga gctcaatgag
    13141 gaatttgttg gaatcggttt gattgataag acgaatgaca ttttagaagg tatgcatgtt
    13201 ggggtctccg gcaaatttat cgaagtagac ctatttgaag aaatggcagg gcgtgttatt
    13261 gatactacag gaaaaatgct ttatgaagaa agtgaagaaa agccgacagc aacctctcca
    13321 cttttctgtg taactccagc tattatgacg attgatagtg taacacgccc gcttaatacg
    13381 gggcttgcgg tgattgattc tattacgcca attggtcgag gtcagcgtca attaatcctt
    13441 ggcaatcgcc agtctgggaa aacacaaatt gctgtggata cgataattaa ccaacatgat
    13501 caaaatgtgc attgcatcta tgttgctatt ggcttaaaag cagcttatat cgcagaagtt
    13561 attgaaactc ttcgaaatca tggagcaatg gaatattcta cggttgttgc aactgcagcc
    13621 agtgattccc ttaccgcgca atatttaaca ccgtatgcgg gtatggcagt agcggaagcc
    13681 ttgcgagatc aaggtaaaga tgtactcatc attttagatg atttaaccaa acatgcggat
    13741 gcttatcgag caattacttt actctttaac cgcccgccag gaagagaagc ttatccagga
    13801 gatagttttt atattcactc tagcctctta gaaagggccg ttcaaatgaa tgaagaacat
    13861 ggtggcggtt ctattacagc aataccgatg attgaaactc tatcagatga tgtaacagct
    13921 tatatcccta ctaatgttat ctctattaca gatgggcaat tatttttaaa atcggattta
    13981 ttcaaccgtg gtcaaaagcc agccgtagat gttggtgtgt ctgtttcaag gattggcggc
    14041 gatgcacaac acccaattat acgcaaatta agtaaaaact taacgttgat tctttcgcag
    14101 tttgaggaat taaaagaatt actcgatttt ggtaatgcac ttgatgatgg cagtatgaaa
    14161 atggtatcgg atggccgatt attaacagaa ttattcaagc aaaaaattct aagcccgtta
    14221 tcagtaacgg aattaatcgt tattttatat gctttccaaa atggctttct aacaaaaatc
    14281 ccgcctgcca atattcagac cttcaaagac cttttgctag aaaaaacgca tatgcataaa
    14341 gattttgagt cgttttcagc tcagatagaa acgattaatg aactgaatga atcgcacatc
    14401 gaaatgctag aagagatcat tcgggaagct gggaggcttt ttagttgagt agcatagacc
    14461 aagcccgaaa aaccattaaa gcactaaatt caacctataa aatagtccat gtaacagaac
    14521 tagcgacact cggaaaactt tccgccttaa gagaaaaagc ggaagcggct gttagttatt
    14581 acgaaactat tttaaaaagt ttgcgctggg tgagaaaaac tatgtacacc agtaataacc
    14641 aagtaaaaga agaaaaaaat gttactgcta ttgcgataac ttctgagcgt ggtctttgcg
    14701 gcgcctataa tagtgaggtt tttgttgaaa tcgaccagtt gattgaatca ctcggcgagc
    14761 aagtaacgat aaattgggta gttgtaggtg aacaaggtca ccgttattta acaaaactag
    14821 gtcagaatat cacctcttat ttacagtttt ctcttgaaaa tattgattta gaaaccacta
    14881 cggctgttac tgctgatttt attgacctaa ttcattcgga acaaatggac gcactatatg
    14941 tgattttcac gaaatatttg aatgcagttc aatcagaagc tatgtgtgaa aaaatttatc
    15001 ctgaaattcc agaagactcg aatacggagg aaattgaagt agattatgta ctcgatttcg
    15061 agacggatga tgagcaggtg gagcagttat tattagaaaa ctatttgtgt ggcttgcttt
    15121 atagcatgtt tcgttactcg gttgccagtg aatattgcat gcgccgaatc gcgatgaaac
    15181 aagccaaaga caatatccag aaacaattgg aagaagctat ttttaatgcc agaaagcaag
    15241 cattacaaca aaaaactggc gaattactcg atatcattag tggagcacag acgattagga
    15301 aggacgaaga ataaatgaaa aaaaacacag gaaccattat tagtattagt ggttttgttt
    15361 taaaaatcga atttaatgag agcgaactgc ctgaaattgg ctttgcgctt gagtatcata
    15421 cacatcaagg aacttatcta gctgaagttg ttcaacatac tggaattaat acagtgtctg
    15481 ccatcgctat tggtgaggta agtggcttgg ctagaggtac ggaagtcgtt aatttaggac
    15541 atccaattga agtacctgtt ggggaaaccg tccaaggaag aatgctaaat gtatatggaa
    15601 aagcgattga cggcaaacca gaaccagctg cggaagtaaa atggccaata ttccgtgacc
    15661 agcctttact tcgagagcta gatacgaata aagaaattct ttacactggt attaaagtta
    15721 tagatcttat ttgtcctatt ttaaaaggtg ggaaaacagg tttattcggt ggagcgggtg
    15781 tagggaaatc tgtcttaatg caagaattga ttaataatat cagtatgctt ggtggtaact
    15841 ctgtatttac tggggttgga gaaagagtta gagagggaat cggcttgtat aaagaattag
    15901 aagcaagtgg tgtgctccct caaacaaccg ttgtacttgg tcaaatgaat gaatctccag
    15961 gtgtacggat gcgcgtggca ttaacaggac taacgattgc agaatatcta cgagatgaag
    16021 agaaaaaaga tgttttatta tttatagata atgtcttccg ctttattcaa gcgggttctg
    16081 aagtttcttc tttacaagga aaaattccta ttactggagg ttaccaatcc acactttcca
    16141 aagaggtcgg cgattttcaa gaccgcatcg cgtctactaa aaatggctct attacctcga
    16201 ttcagtgtgt atttttacca gcagatgata ttgatgatcc atctgcagtt gcgacgttta
    16261 gccatctaga ctcaacaatt gtattagagc gttcgattgc ggcacttggg attttcccag
    16321 cggttaatcc acttcaatca ttctcaagag cactcaatcc aacctttgtt ggcgagcgac
    16381 actaccaatt agcggcgcaa gtgaaattta tcttacagcg ttatatggaa ctgcaagaaa
    16441 tcatcaacgt acttggaatg gcagaattaa gtgatgaaga tagaaaacta gttcatcgtg
    16501 caaggaaaat ccggaatttc ctttcacaac cattctatgt ttcggaaaaa ttcactggaa
    16561 cagaaggcac atttgtagaa attgaagatt tgctagggag tatcgaacgc attttgaacg
    16621 gtgattatga tgaacgctca gaacgtgatt tcctatttat cggatcctac aaagacttga
    16681 aataggagga gaaggaaatg aaacttaaaa tcgtctcgcc tatggggcag ttttttgaag
    16741 gagaagtaga gggctttgtt attaatacaa aagaaggaca acaaaccgtg ttagaagagc
    16801 atattgattg tttaagcttt tttgactata gtgaaatcag tattttagat gcagttgctt
    16861 cggacccaat ctttgtggca cttggatatt tacatttagt acaaaatgaa gcaaatatca
    16921 tggcacagtt tgcttctacg gatgccgagc aagcggagcg gatttttgaa agactaaaca
    16981 agcgaaaaca aacagagagt aggcggtccg atgacaagcg aattttttag tacacttctg
    17041 ttgattattg gtttattact tggttttttt ctggcgatat tattgatttt ggtggggatt
    17101 cggcgctttt tatgtagcgc tgaggaaccc ttaaaacgaa tccagcgcta tcaattatgg
    17161 cataatcgct atcagttaaa tgcagaggtt acttcttttt taattgttat tggagcatca
    17221 ctttcagtaa gccttattac attacaaatt accgcaattc cttttcaata tacggtgcta
    17281 atattttgga gtagttggct attccactta ctttcttttt ggaagaagat aagagtacct
    17341 aaaaaaatga agaacgaaat gaagcaatta gcaggatttc ttttgatcac agtgctttat
    17401 tttgttggtt tttttgcaat gaagtcagtg catttttcta ttatacaagt agcagatttt
    17461 ccgggagtta ttcagttcgg aataagaacc tatctaacta tttgtagttt ttttgtggcg
    17521 tgtggggcat taattgtttg gcagcgcatc tatgtgaaac tactaaaatg actaagaatg
    17581 tgaataaagc ataaccaaga aaagtgagga tgtctacgtg gcatcctttt ttataaatga
    17641 atataaaaaa agaatttttc taacatattt ctaacatact tgtactatac tttaaataag
    17701 ctgttgatta gccataagaa aatgaacgaa aggaagtaaa ttcaaatgac ttttttagaa
    17761 ttccatcaat tggtcaaaga agatttgttg atttattcat ggattataaa aaattttcac
    17821 cttacgcgtc aaaaattaat ggcgggtggc gaaataacga tgaaccgtga acaagtaata
    17881 gtcatggaga aaggtttact agtacaagta aacgaggaag gtaaagatga tttgtatcgt
    17941 gtttttatcg atcaacgaat tatttttaca acaaaaggag acattacctt aacggcgtta
    18001 gaagatacca cttatagcat cattcgagca gaagaattaa ttggaaaatt agaagaccaa
    18061 catttattac caacattttt cttagaaata gcggaagact ttgagaaagg tctagactgg
    18121 caaagaacgc taatttctgt tgatcctgca gaacgtgcgg aaatgatttt ggcgaaaatt
    18181 atcgagcgtt atcaaataaa ttcagagaac aaaccagaat ttccaagatg gttaagaata
    18241 aatgtactag caagatttgc caaatgctca gtgtctacta tgtcgtcagt tgtaaacgaa
    18301 ctagtcaatg aaggtgactt aaatataaaa ggaacacctt ggttattgac tcgaccttat
    18361 caggcaactt gtgcttaaaa cagacctgta aaaaaccacg cttaaatgac atttgcgtgg
    18421 tttttttacg cgatctataa aaaaagataa atttattacg tttttttgat atagatacaa
    18481 caattttcag atacactaaa taatcaaaac gtattttctg tatcaatagg cgatacacta
    18541 atgattatag tattaatata gatgttaaaa tcattggtgt ataagggttt tgagagtaat
    18601 actataaatt ggcacagaac ttgcaataaa tatagcgggt agcaaaataa atgaattata
    18661 ttaggaggga aaaagatggt aggaattatc ctcgcaactc acggtgaatt tgctgaaggt
    18721 attttgcagt ccggaacaat gattttcggc gagcaagaaa acgttaaagc aatcactttg
    18781 atgccaagcg aaggtccaga agacatcaaa gctaaaatgg aagctgcaat tgcatccttt
    18841 gatagccaag atgaagtttt attcttagtg gatctttggg gaggcacacc attcaatcaa
    18901 gcaaacggtc tttatgaact acataaagat aagtgggcaa tcgtagcagg acttaatttg
    18961 ccaatgctga ttgaagcttt ctcatcacgt tttacaatgg aaagcgcaca cgaaatcgca
    19021 gcaaatattc ttgcaccagc tcaagaaggt gtccgcgtta aaccagaaga actacagccg
    19081 caagtaacag ctactgaaca gccacaagca gaaatcgctg cagttggtga tggcaaaatc
    19141 gaattcgttt taactcgtgt tgattcacgt ctcttgcatg gtcaagtagc cactgcatgg
    19201 acaaaagcaa cacacccaac aagaattatc gtcgtttcag atgcagttgc aaaagacgac
    19261 cttcgtaaaa aattaatcga acaagcagca ccaccaggag taaaagctaa cgttatccca
    19321 gtccaaaaaa tgattgagat ttcaaaagat ccgcgtttcg gcaatacaaa agcactttta
    19381 ttattcgaaa atcctcaaga tgttttacgc gcaattgaag gtggcgtaga aatcgaacaa
    19441 gtaaacgttg gttccatggc tcactctgta ggtaaagttg ttgttagcaa agtactttcc
    19501 atggggaaag atgatgttga aacctttgag aaactaaaag aaaaaggcgt taaattcgat
    19561 gtgcgtaaag tccctaatga ctcaagcgca aacatggaag acatcatcaa aaaagcaaaa
    19621 cacgaactaa agacacaata aaaaattaaa ataggaggtt tattatgtct gtcatatcaa
    19681 taattttagt agtacttatt gcatttttag caggtattga aggaattcta gatgaatttc
    19741 agttccatca gccattaatc gcatgtacat taattggtct cgtaacaggt aacttaacag
    19801 catgtatcat ccttggcgga actctacaaa tgatcgcact tggatgggca aacatcggag
    19861 cagccgtagc accagatgcc gcgcttgcct cagtagcttc agcaattata ttagtattag
    19921 gtggacaagg ggtagcaggt attccatctg caatcgcgat tgcaattcca ctagcagtag
    19981 caggtctttt cttaacaatg atcgttcgta cattggcagt tccaattgtt cacttgatgg
    20041 acagagccgc tgaaaaaggg aatatacgca gcgtagagtg gttacatatt tcagcaattt
    20101 gtatgcaagg tattcgtatc gcgattcctg cagcagcact tttattcatt ccagcagaca
    20161 gcgttcaatc tttcttagaa gcaatgccag cttggttaac agatggtatg gctatcggtg
    20221 gaggaatggt agttgccgtt ggttatgcac tagttatcaa catgatggct actaaagaag
    20281 tatggccgtt cttcgtaatc ggtttcgtag tagctgcaat ttctcaactt acacttatcg
    20341 caattggtgc tctaggtgtt gcacttgctc ttatttacct taacctatct aaaatgggtg
    20401 gcggtaactc aaacggcggt ggaggcggaa actctcgcga tccactgggc gatatattaa
    20461 acgactatta ataaaaaaag gaggagaata gaatggcaga aaaaatcgaa ttatcaaaga
    20521 gagaccgtct acgcgtagca tggcgctcta cgttcattca aggttcatgg aactacgaac
    20581 gtatgcaaaa tggtggctgg gcattctcta tgattcccgc tattaaaaaa ttatataaaa
    20641 ctaaagaaga tcgttcgcaa gctctaaaac gtcacttaga attctttaat acacatccat
    20701 atattgcatc tccaattcta ggggtaacac ttgctcttga agaagaacgt gccaatggag
    20761 cagaagttga tgatgtagca attcaagggg ttaaagttgg tatgatggga cctctagctg
    20821 gtgttggtga tccagtattc tggtttacaa ttcgtccaat gttaggagca ttaggtgctt
    20881 ctcttgcctt gagtggaaac attcttggac caatcttatt cttcgttgct tggaacgtaa
    20941 tccgttgggg cttcatgtgg tatacacaag aattcggcta caaagctggt tctaaaatta
    21001 ctgatgacct ttctggtgga ttactacaag acattacaaa aggtgcttcg atactcggga
    21061 tgttcgtcct cgccgccttg gtgcagagat gggtaaatat ccagtttgcg ccaattatct
    21121 cgaaagttaa acttgatgaa ggtgcgtata ttgattggag tcatcttcca caaggcgctc
    21181 aaggtatcaa aactgcttta gaacaacaac aagcaggttt agctctttct gaaattaaag
    21241 taacaacctt gcaaaataac ttggataact taatcccagg acttgcagca gtagctctta
    21301 cattcctatg tatgtggtta cttaagaaaa aaatcagccc aattatcatc attctaggtc
    21361 tattcgtagt tggtatagtt ggtcacttaa tcgggcttct gtaaaaataa gctgatcgaa
    21421 aagaggctgg tgcaatattc accgagcctc ttttcgttta gatatatgac acagataaac
    21481 gaatacggta taataaacaa aacaagcgaa aagaaatgga gcgaatacag ttggttcaat
    21541 cgattaatac aaaggtagac ttaacaatag atgccaccgc gtatactgga cttacagatt
    21601 acgggaaaat tatgattggc gacaaaggtt ttgaattttt taactcacgt gatgtgcgta
    21661 aattcgtcca aatcccttgg gaagaagtag atcaagttat cgtatccgtt atgctaaaag
    21721 gtaagtggat ccctcgctac gccattaaaa caaagcgcaa cggcacatac acatttgctt
    21781 ctaaacgacc taaagaagtt ttacgtaaaa tacgagttta tgtcgaccca gccaatatgg
    21841 tgagctcgct cagtttcttt gatgttatga agcgctcgtt tcggtcgata tttagcaaga
    21901 aaaaaaacaa aaataaataa gccgatttat accgaaaagc ttcaatggat ttatgtctgt
    21961 tgatgctttt tttcgtacat aataattgaa caaaccacgt actttgttat aatctaaagt
    22021 aaacaaagga ggaacaccaa tatgaaaaaa ccaagaatct acacgatgtc attcgctagt
    22081 gtataccctc tttacataca aaaagcggag aaaaaagacc gcacaaaaga agaagtggat
    22141 gaaattattt tttggctaac cggctatgat caagattctt tgcaacaagc aatcgaccaa
    22201 gcaattgatt tcgagacctt ctttgccgaa gcaccaaaaa tgaatccgaa tgcttcctta
    22261 atcaccggag ttatttgcgg ctaccgagta gaagaaattg aagataaact aatgcaacaa
    22321 attcgttatt tggataaatt ggtggatgaa ctcgcaaaag ggaaaaaaat ggagaagatt
    22381 ttaaggaaat aagaaaaaag cagccggatt tggatggctg cttttttatt gcttagcttc
    22441 tggagacttt cttttttaaa tttgctagag agttcgctac ttttaaagta gtttttacag
    22501 attttcggtt taatgttcct tgataatgtc tgattttatt agttagttcg tgatttttat
    22561 taatcgtcaa ctgtaatttt tgtttagtat ctgtcagttg tttttctaat tgctgatttt
    22621 tttcttgtgt ttcagtaatt ttttgttggt attttttgtt ttgttcagaa gttgtttttt
    22681 tcagttgggt aagttgatta tttacgagat tgacgcggta tcttgtgcta aaatcatgtc
    22741 tttcttttaa taaattggtg gagattttta ctcggtttag catttcttga gggtttaata
    22801 tggaaatggg gtctggactt gttgggaaag taatggagtt tataagttca tccatgggag
    22861 ctgattttct gtttttatcg tatttataga tatgattgag accattagta tctaagaaat
    22921 caatataatt atcaaaattt cttgcttgga ctttttcggc tgatttcagg tccactttag
    22981 ttagtaattc ttggaggttg ttggtttttt ctaattcatc gatggttacg tgaggaagcg
    23041 catggtagga agctagttca cgcattctgg catcttgtac gaaagaaata ttaggtgttc
    23101 cgactattgt tggaatgacg tttccatgta ggcgagagcc aatgctaaaa tcaactttct
    23161 tcacaaaatc gaaccaacta ggcatgctag tgaaatattt tactcgacct tcttgataat
    23221 acttatgttg gatatttgtt gggtagccat tgatatcact agagatatct ggaccgccgg
    23281 catacattaa atggaattcg tctaggtgtt gagggataaa gtgatagtct ttatatgtag
    23341 taatcatgtt gttaaggaaa ttgatagcta tttctgaaga agttggggat gcattaatag
    23401 cgatggtgga ttgatctgtt aagtgaaaat ctcttatttt tatttctcgt ccgaatgtat
    23461 aaagggacgg acaaccaatt actcggaagt caagttctgc gttaaatcct agttttttta
    23521 aataatctgc agtaatttgt cctcgaaccc caatttgagc tgatttttct aggactgctt
    23581 taacaaagtt agtaacatct tcatcaaaag aaaaaccttc gtctagttgt ggttcgtaat
    23641 tcgctcttaa cccgacgcct gttacgatga ctgggatttt taatttgcga atgagttggg
    23701 tgtaattgcg gagtactggc ctaaagtcgt ctcgaaatgc gtcagctaaa ggcataacat
    23761 agaggtcgta attttcattg attttttctg cgagattggg gttagatgaa agaccgtcag
    23821 catgtatttc tacatcatca ttccacaaag ctcgataaat gctatattga tacgcaagat
    23881 taccattgtt aaacccggtt cgatccttta aatagatgtc ttccggcgtg tagacattgg
    23941 tcggtcgcat acccgatcta atgagtattc gcttcactaa aaaaccacat ccttaagtaa
    24001 gttaatattt aaagtatatc aaaatattaa cctggttaac aattttaaag atgaaattca
    24061 tggtttattt gtgattatgt ttacatgcat caaagaagta gccgatttct tccactaatg
    24121 cttcattcac cgaataaata tgcgtggttc cttcctttct taaattaata agttttgctt
    24181 ctttaagcag tttaatgtgg tgagacatgg tagatttgga gatattgtaa gttgtgccag
    24241 agaagcgttt ttctttgctt ttcagtaaac ataggaaaat atcaagacgg attggatcg
//
LOCUS       DASDXX010000021        23239 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.021, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000021 DASDXX010000000
VERSION     DASDXX010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23239
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.021"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            176..1216
                     /gene="rsgA"
                     /locus_tag="U0280_000682"
     CDS             176..1216
                     /gene="rsgA"
                     /locus_tag="U0280_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM2270639.1"
                     /translation="MTLEQYGFTNFFKEQKIAATSSYGRVTAVFRDYYRVITENEEFL
                     ASLKRGNFYELSSTSLPAVGDFVEVSSDAQILSVLERKTVFSRMNKDSEEQLIAANFD
                     YALIVMSLNHDFNLNRLERYLTVAWDSGATPIIILTKADLVEDLTAFAQQLETVAYGV
                     PAYYVDNLSHHGFEALERDLKPNSTLVLLGSSGVGKSSFINSLAGTDLMKTAGIREDD
                     SKGKHTTTHREMHLLTNGWIVIDTPGMREFGVGFNQAGLETTFSDVEELAEGCRFHDC
                     SHTQEPGCAVKAALEDGTLTMQHYENWLKLQREMAYHARKNSPALARQERDRWKVIQK
                     SLRTHLKTRPKK"
     gene            complement(1255..3426)
                     /gene="pnp"
                     /locus_tag="U0280_000683"
     CDS             complement(1255..3426)
                     /gene="pnp"
                     /locus_tag="U0280_000683"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEM2270640.1"
                     /translation="MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAA
                     VGSKKPRPGDFFPLTVNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLF
                     AEGFRNEVQITSTVFSVDQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKY
                     VINPTIEQAEKSDISLTVAGTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQ
                     QQIIAAVGKEKREIELFVSDPELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEI
                     LESYKAKELENEAEILSEVAHILEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVG
                     MLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEYKRFMHHYNFPQFSVGET
                     GPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQASICGSTL
                     AMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGMEDHFGDMDFKVAGTKDGITALQ
                     MDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKIITLNIKPEK
                     IKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVG
                     EVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD
                     QQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKPESK"
     gene            complement(3674..3943)
                     /gene="rpsO"
                     /locus_tag="U0280_000684"
     CDS             complement(3674..3943)
                     /gene="rpsO"
                     /locus_tag="U0280_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEM2270641.1"
                     /translation="MALTQERKNEIIAEYRVHDTDTGSPEVQIAVLTAEINSLNEHVR
                     VHKKDHHSYRGLMKMVGHRRNLLTYLRKKDVQRYRELIKRLGLRR"
     gene            complement(4080..5024)
                     /locus_tag="U0280_000685"
     CDS             complement(4080..5024)
                     /locus_tag="U0280_000685"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEM2270642.1"
                     /translation="MKTIYLHHPITTDEWTDINKVMALGFFDGVHLGHQAVIKKAKQI
                     AEKKGLQTAVLTFDPHPSVVLSNIRKQVKYLTPLEDKAEKMAELGVDIMYVVRFTTQF
                     SELSPQAFVDNYLVALHVQHVVAGFDYSYGKKGEGKMTDLAKYADGRFEVTIVDKQTA
                     ASDKISSTNIRRAIIEGELEEANQLLGYPYTTKGTVIHGDKRGRTIGFPTANIRVNED
                     YLIPKLGVYAVKFRVNGETHLGMASIGYNITFKDDQALSIEVYILDFHREIYGEEAEI
                     EWYQFFRPELKFNGVEGLIAQLEKDEQDTRAFFANLED"
     gene            complement(5094..6008)
                     /gene="truB"
                     /locus_tag="U0280_000686"
     CDS             complement(5094..6008)
                     /gene="truB"
                     /locus_tag="U0280_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEM2270643.1"
                     /translation="MNGIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGV
                     LPICIGRATKLAEYVTDEGKVYVAEITLGKSTTTEDATGETVMTKELADISADELQAA
                     LTKLTGKITQIPPMFSAVKVNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNE
                     ANPTFQLEISCGKGTYIRTLAVMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDE
                     MMQASDSSFLYPLEKGIESMAKLVIDEEIHAKVLNGGLLPKSLFIEVENEPRAALIFN
                     DKLTAIYKPHPEKNELWKPEKVIELHQA"
     gene            complement(6104..6448)
                     /gene="rbfA"
                     /locus_tag="U0280_000687"
     CDS             complement(6104..6448)
                     /gene="rbfA"
                     /locus_tag="U0280_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEM2270644.1"
                     /translation="MNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQ
                     EAKVFISILGTDKEKENTLLALAKAHGFIRSEIGCRIRLRKVPEMSFEIDNSIAYGNR
                     IDELLRDLNNDQ"
     gene            complement(6465..6743)
                     /locus_tag="U0280_000688"
     CDS             complement(6465..6743)
                     /locus_tag="U0280_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF503 domain-containing protein"
                     /protein_id="HEM2270645.1"
                     /translation="MIQSVVSEFFMQEPQNLKEKRAILKRIVTRAKQKFNISIAETDY
                     QDLWQRAEISFAIVSSSHIQAEKEAREVLAFLDSFPEWERAETVMEKL"
     gene            complement(6740..9088)
                     /gene="infB"
                     /locus_tag="U0280_000689"
     CDS             complement(6740..9088)
                     /gene="infB"
                     /locus_tag="U0280_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEM2270646.1"
                     /translation="MSKVRVYEYAKEHQVSSKKVIEALKDLGIEVANHMSTINENALR
                     QLDNAIDGTNKKAEAPKKETTSNENGNSKGPNKPNMTNSNEKSNKPNNPAGQANKPAT
                     ANKSQGAKPATNKPANTSKQTQSSGNQQQAGGQKRNNNNNSNRPGGGNPNRPGGNNRP
                     NRGGNFNNKGRNTKKKGKLNHSTVPPTPPKPKELPEKIVFSESLTVAELAKKLYREPS
                     ELIKKLFMLGVVATINQSLDKDAIELICDDYGVQVEEEIKVDVTDLDVYFENELNEAV
                     DESKLVERPPVVTIMGHVDHGKTTLLDSLRNTKVTLGEAGGITQHIGAYQLEIHDKKI
                     TFLDTPGHAAFTAMRARGAQITDITILVVAADDGVMPQTIEAINHAKAAGMPIIVAVN
                     KIDKPQANPDRVMQELTEYELVPEAWGGDTIFAPISAKFGEGLENLLDMILLVSEVEE
                     LKANPDRRAIGSVIEAELDKGRGPVATLLVQDGTLNIGDPIVVGNTFGRVRAMVNDLG
                     RRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTARNIGETRASRALVAQRSATNRV
                     SLDNLFEHMKAGEMKEVNVIIKADVQGSVEALAASLRKIDVEGVNVKIIHTAVGAINE
                     SDITLAAASNAIVIGFNVRPTAQAREAAENESVDIRLHRVIYKAIDEIEAAMKGMLDP
                     EFQEKIIGQAQVRQTINVSKVGTIAGCYVTDGKITRDSGVRIIRDGIVVFEGEIATLK
                     RFKDDAKEVAKGYECGITVQNFNDIKEDDVIEAYVMEEIERK"
     gene            complement(9111..9410)
                     /locus_tag="U0280_000690"
     CDS             complement(9111..9410)
                     /locus_tag="U0280_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ family RNA-binding protein"
                     /protein_id="HEM2270647.1"
                     /translation="MDKKALSLLGLANRARKITTGEELVLKAVRNGKAKMVLISEDIS
                     EKTEKTIRNKCEYYNVVVKKAGTREMIGGAIGKDTRAIVAILDKGFAVKLAELLG"
     gene            complement(9403..9687)
                     /locus_tag="U0280_000691"
     CDS             complement(9403..9687)
                     /locus_tag="U0280_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEM2270648.1"
                     /translation="MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPG
                     RGFYIIKSVEVCEKAKKKNAIFHQLKMPEQESFYDELITYVKSLEEPTNG"
     gene            complement(9702..10820)
                     /gene="nusA"
                     /locus_tag="U0280_000692"
     CDS             complement(9702..10820)
                     /gene="nusA"
                     /locus_tag="U0280_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEM2270649.1"
                     /translation="MSTELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQN
                     VRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDF
                     GRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAI
                     LSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDG
                     VVEIKSVAREAGDRSKISVYTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWS
                     EDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWK
                     IDIKSETVATELGIYPRNDVEAPEVEDAESETYTEDEE"
     gene            complement(10850..11317)
                     /gene="rimP"
                     /locus_tag="U0280_000693"
     CDS             complement(10850..11317)
                     /gene="rimP"
                     /locus_tag="U0280_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEM2270650.1"
                     /translation="MSKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKD
                     GGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHV
                     TSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF"
     gene            complement(11499..15833)
                     /locus_tag="U0280_000694"
     CDS             complement(11499..15833)
                     /locus_tag="U0280_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM2270651.1"
                     /translation="MTAKEEEKQERFQLLMTQIGLQDVTTYEEFTKDAKIEKLVADKK
                     NKTWQFHLHVPQIFPAALFHMMDVGMKRAFSQIAETEMQIVPENQTIDETLIQDYWNL
                     IVEPIGKQSPMIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAG
                     FPRLAMKMHLLDQSETEEYKAFALAKQEEDQKKAAEAVQVMQKRQAEGQSGGGGAAPL
                     TGPFQIGYKIKDDEEVKRLGDIYDEERRITVQGLIFATEIRELRSGRSLLQFKITDYT
                     SSMIIKMFSRDNEDAAMFQNLKKGMWVKVRGSVQNDTFVRDLIMMAQDVNEIAGVKRL
                     DTAEEKRAELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAG
                     QKYGLKVIFGIEANLIDDGVPIAYNDQHIALEDATYCVFDVETTGLSAVYDTIIELAG
                     VKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDDMVKGSDPIDVVLKRFKEWSGDDI
                     LVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNII
                     LEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIY
                     AQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQK
                     GMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVA
                     TGNVHYKDPVDKIYRKILIHSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKE
                     IVVTNANLVVDWMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEAR
                     LEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVGSRGSVGSSFVATMTEITEVNPLP
                     PHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFETFLGFKGDKVP
                     DIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYERDMNMTIRG
                     AEIDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH
                     SIHDNVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLGVKPADI
                     DSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLGNAEELIKNKTC
                     ELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKGKGLTEEMEEAMMANKVPLWYIE
                     SCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEA
                     VKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDS
                     LIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQRGKVSKTIIQYMDDQGCLEGLP
                     DQNQLSLF"
     gene            complement(15939..17645)
                     /locus_tag="U0280_000695"
     CDS             complement(15939..17645)
                     /locus_tag="U0280_000695"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007474535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEM2270652.1"
                     /translation="MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLP
                     LATLMLRKIETIIREELEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASR
                     DFALGPTHEEVITALLRDEVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDA
                     YSFHATSESLDEVYNLMHQAYSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGE
                     DTIAYSDASDYAANTEMAPVLYMEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEK
                     TMKSMLYQVDDEVIMVLVRGDHEVNDIKIKNALDATNVELVDPAVAVELLGANFGSLG
                     PINVPENTRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDL
                     SPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILS
                     AIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFSVLIDDR
                     AERAGVKFADADLIGLPIRITVGKKAAEGVVEVKIRKTGEMIEVRQDELLNTLPILFG
                     DK"
     gene            complement(17686..18948)
                     /gene="rseP"
                     /locus_tag="U0280_000696"
     CDS             complement(17686..18948)
                     /gene="rseP"
                     /locus_tag="U0280_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEM2270653.1"
                     /translation="MTTIIAFIFVFGLIVFFHELGHFLFAKRAGIMVKDFSIGFGPKI
                     FAYRKKETQYTIRLLPIGGYVRMAGEDGEEIELKPGYRVGLELTPEETVSKIIVNGKD
                     QYVNAQPIEVSLCDLEKELFIEGYEDYDDTKKVRYQVERDALVIDGKIETMITPYDRS
                     FNAKSLGNRAMTIFAGPLFNFILAILIFTALAFVQGGVPSTDNTLGNVLPDGAAAEAG
                     LKKGDEVLSINGKETKSWTDIVQSVSENPGKTLDFKIERDGKTQDIDVKPATQKENGK
                     DVGKIGVETPMDSSFTAKITNGFTQTWNWIVQIFTILGNMFTGGFSLDMLNGPVGIYT
                     STQQVVQYGFMTVLNWTAVLSINLGIVNLLPLPALDGGRLMFFLYELVRGKPIDPKKE
                     GIIHFAGFALLMVLMILVTWNDIQRAFF"
     gene            complement(18962..20104)
                     /locus_tag="U0280_000697"
     CDS             complement(18962..20104)
                     /locus_tag="U0280_000697"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEM2270654.1"
                     /translation="MKKIILLGATGSIGTQTLAIIRENPEKFQIVALSFGRNMERGRA
                     IIKEFKPKMVAVWHTRDRVILEAEFPNVKFFNGLEGLREVATYLDGDVLLNAVMGSVG
                     LLPTLDAIEAGKAIAIANKETLVTAGHLVMRAAKEKNISLLPVDSEHSAILQALNGEN
                     TERIEKLVLTASGGSFRDKTREQLSEVTVKEALKHPNWNMGNKLTIDSATMFNKGLEV
                     MEAHWLFGVDYDDIEVVIQRESIIHSMVQFVDGSFIAQLGTPDMRMPIQYALTYPDRL
                     YIPYEKEFRITDFSALHFEKVDYERFPALKLAYNAGKIGGTMPTVLNAANEIAVAGFL
                     NGQVAFYNIEALVENAMNRHTSISDPDLDTILQVDQETRAYVKTLL"
     gene            complement(20119..20907)
                     /locus_tag="U0280_000698"
     CDS             complement(20119..20907)
                     /locus_tag="U0280_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEM2270655.1"
                     /translation="MKTRIITAVVALIFFIPFVVYGGIPFELLSILLATIALYEVLVM
                     TKQRIFSMNGIITLLLMWLVVVPDRYLDFLDTLHITEMEVIFILMALLLANTVFSRNK
                     FHFDQVGICMVAAFYTGFGFHYLALTREAGLMYVLFALFIVWSTDTGAYFIGKAIGKH
                     KLAPNVSPNKTVEGFIGGIVCALVIAGGFYYFAELPGNIALVLALLVFLSIFGQLGDL
                     VESALKRFYGVKDSGKILPGHGGILDRFDSLLFVLPLLHILQII"
     gene            complement(20921..21679)
                     /locus_tag="U0280_000699"
     CDS             complement(20921..21679)
                     /locus_tag="U0280_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEM2270656.1"
                     /translation="MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLP
                     RIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSF
                     VPELIEENVRVNVMGYRENLPNHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITA
                     AKEAMKELELKGKSADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYS
                     EFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL"
     gene            complement(21910..22467)
                     /gene="frr"
                     /locus_tag="U0280_000700"
     CDS             complement(21910..22467)
                     /gene="frr"
                     /locus_tag="U0280_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEM2270657.1"
                     /translation="MSKEVLSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDY
                     YGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSI
                     PQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDV
                     QKLTDESIKNIDSITKDKEAEILEV"
     gene            complement(22467..23195)
                     /locus_tag="U0280_000701"
     CDS             complement(22467..23195)
                     /locus_tag="U0280_000701"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEM2270658.1"
                     /translation="MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVEL
                     GVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQ
                     TSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILM
                     AKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSF
                     TEQGNNIKRVILGEKIGTTVRGKK"
BASE COUNT         6500 a         4959 c         4065 g         7715 t
ORIGIN      
        1 gcataaaaat taatacaaaa aaaggaaata agtctagagc ttgtttcctt ttttgtgtta
       61 ttatttaaga aagaaaggat gatgaattat ggcaattgta aaaatggaaa acctcataat
      121 taatacgggg gtattttacc tatagaatgc tcccaactac aaaggagcga aaacattgac
      181 attagaacaa tacggtttta caaatttttt taaagaacaa aagatagctg caacctcctc
      241 ttatggtaga gttacggcgg tatttagaga ttattatcgc gttattacgg agaatgaaga
      301 atttttagca tcattgaaac gtggaaattt ttatgaacta tcctctactt cccttcccgc
      361 tgttggtgat tttgtagagg tcagtagcga tgcgcaaata ctctctgtac tagagcgtaa
      421 aacggtcttt tctcggatga ataaagactc agaggaacaa ttgattgcag cgaattttga
      481 ttatgctctc attgtgatga gtttgaatca tgactttaat ttgaatcgat tagagcgtta
      541 tttgacggtt gcttgggata gtggtgcaac accgattatc attttaacaa aagcagattt
      601 agtggaggat ttaacagcct ttgctcagca gctcgagaca gttgcttatg gcgttccagc
      661 atactatgtg gataatttat cacatcatgg ttttgaagct ttagaacgcg atttaaagcc
      721 gaatagtacg cttgttttgc ttggctcttc cggtgtcgga aaatcttctt ttattaattc
      781 gcttgcaggt actgatttaa tgaaaactgc tggtatccgc gaagatgata gtaaaggaaa
      841 acatacgacg acacataggg aaatgcattt gcttacgaat gggtggattg tgattgatac
      901 acctggaatg cgtgaattcg gtgttggttt taaccaagct ggattagaaa ccactttctc
      961 ggatgtagag gaattggctg aaggatgtcg ttttcacgat tgctctcata cacaagaacc
     1021 aggttgcgct gtaaaagcag cattagaaga tggcacttta actatgcaac actacgaaaa
     1081 ttggttgaaa ttgcagcgag aaatggctta tcacgctcga aaaaatagcc ctgctctcgc
     1141 aagacaagaa cgtgaccgct ggaaagttat tcaaaaatca cttcggacac atttaaaaac
     1201 acgtccaaaa aaatagtaaa aaaagcaagt agctcaggct acttgctttt tgtattattt
     1261 agattctggt tttttcgttt taggatagaa ttttttctct gcttgtggtt ttttatcgcc
     1321 ttctggttgt tcttttttct caagcaaagc tttacgtgat aagttaacgc gaccttgttg
     1381 gtctacttcg ataactttaa cagtaacttc atcacctagt tttaggatat cttctacttt
     1441 accaacacgt tcatgtgcta attcagaaat gtgaactaag ccatctgtac ctttgaataa
     1501 ttcaacaaat gcgccaaatt tttcgatacg acgaactttt ccagtataaa cttctcccac
     1561 ttccacttca cgaacgatgt cttcgatgat agcaattgct ttacggttca ttgcttgatc
     1621 ttgagaagca atgtacactg taccatcttg ttcgatatca atttttacgc cagtttcatc
     1681 aataattgca ttgatttgtt ttccgccagg tccaataaca tctttgattt tctcaggttt
     1741 gatgttaagt gtaatgattt ttggagcata agcagaaagt tcttcacgtg gtgcgctaat
     1801 tgtgctagtc aagtgttcta gaatgtgtag gcgcccttct tttgcttgcg ttaatgcttc
     1861 gtccaaaatt tggcggctta agccatcaat cttgatgtcc atttgaagtg ctgtgatacc
     1921 atcttttgtt ccagcaactt taaagtccat atcgccaaag tgatcttcca taccttggat
     1981 atcagaaaga atggtgtaat catcgccaag tttgacaaga cccattgcga tacctgcaac
     2041 tggcgcttta attggaacac cagcatcaag cattgcaagt gtagaaccac aaatacttgc
     2101 ttgcgaacta gagccattag attcaagaac ttcagatact aaacggattg tgtacgggaa
     2161 ttcctcttcg gaaggaataa catattgtaa cgcacgttca cctaatgcac cgtgaccgat
     2221 ttcacgacga cctggagcac gacgaggacc tgtttcccca acactaaatt gcgggaagtt
     2281 ataatgatgc ataaagcgtt tgtactcttc tgtccctaaa ccatcaatga tttggtgttc
     2341 acgaagcggt gccagtgtac atacacttag agcttgtgtt tgaccacgag tgaataaacc
     2401 tgaaccatgg acacgaggaa gcataccaac ttcagaagaa agtggacgaa tttcgtttac
     2461 tttacgacca tctggacgga ttttatcttg agaaatcaaa cgacgcattt cgtctttttc
     2521 gatcatttca agaatatgag ctacttcgct aagaatttct gcttcgtttt ctagttcttt
     2581 tgctttatag ctttctaaaa tttcttcttt tacatcttca attgctgctt cacgtgcttt
     2641 tttctcttct gttttgatag ctgctttcat tttgccttca cttgctgctt ttacttctgc
     2701 ttcaagttca ggatcgctta cgaaaagttc aatttcgcgt ttttctttac caactgcagc
     2761 gataatttgt tgttggaatt cacaaagacg tttaatttct tcgtgaccga acatgattgc
     2821 ttcaagcatt gcttcttctg aaacttcttt cgctccagct tctaccatgt tgattgcatc
     2881 ataagttcct gcaacggtta agctaatatc acttttttct gcttgttcga tagttgggtt
     2941 gataacgtat tttccatcga tacgacccac atccacacca gcgatcggtc cttcaaatgg
     3001 aatatcggaa ataactaatg caacagaaga gccaagcatt gctgccattt ctggagaaca
     3061 atcttgatcc acactgaaaa cagtagatgt aatttgaact tcattacgga aaccttctgc
     3121 aaataatgga cggattggac ggtcaattag acgcgctgtt aatgtcgcac ggtcactagg
     3181 acgtccttca cgttttaaaa atccaccggg aactttacca acggagtaca ttttttcttc
     3241 atagttaact gttagtggga aaaagtcgcc tggacgtggt tttttagaac ctactgctgc
     3301 tgttaaaacg accgtatcgc cgtaacgaat taaggctgct ccacttgctt gttttgctaa
     3361 ttgacctact tcgacagata atgtcttacc tgcccattct gttgaaaata cttgtttttc
     3421 agacatattt taatctcctt tgattaggaa aaacacgaac cagaaacttt accatgcata
     3481 agaatgttca cgcacacttt agattttcta aagcacacat gaatccaaaa acctgctaaa
     3541 aatagcgatt tttgaagcac gtttttggat tcatgcgata aagtttcatt tcttcggcgt
     3601 gttttccaaa atttagtata gttaatactc aaaaaaaagc gggaactttt ggtatcccgc
     3661 tttcgtctgg tttttatcga cgtaaaccta aacgtttgat aagttcgcgg taacgttgaa
     3721 catctttttt acgtaggtaa gttaataggt tacgacggtg acctaccatt ttcattaatc
     3781 cacggtaaga gtgatgatct tttttgtgta cgcgaacgtg ttcatttaag ctattgattt
     3841 cagcagttaa tacagcgatt tgtacttctg gtgaaccagt atctgtatca tggacacggt
     3901 actctgcaat aatttcattt ttgcgttctt gagttaaagc catttctttc cacctccttc
     3961 taaaatatcc ccaattactg agccaagcgt cggtgagtcg caaaagccaa gtaatggttc
     4021 tgttcgtaca gatttaaaga tacactattt aggctctaaa agcaagcaga aatagtcgtt
     4081 taatcctcta aattagcaaa aaatgctctt gtatcttgtt cgtctttttc taactgagca
     4141 attaaacctt ctaccccatt aaatttaagt tctggtcgga aaaattgata ccattcaatt
     4201 tctgcttctt cgccgtaaat ttcgcggtga aaatctagaa tatatacttc aatggacagc
     4261 gcttgatcgt ctttaaacgt gatattgtag ccaatgctag ccatccccaa atgagtttcc
     4321 ccgttcacgc gaaattttac tgcatagaca ccaagtttcg gaatcaagta atcttcattt
     4381 acacggatat tcgctgttgg aaaaccaatt gttctacctc gtttatctcc gtgaatgacg
     4441 gttccttttg ttgtatatgg atagcctagt agttgatttg cttcttctaa ctcgccttct
     4501 ataatcgcac gtctgatatt tgttgagcta attttatcac ttgcagcagt ttgtttatca
     4561 acaatcgtaa cttcaaaacg accatcagca tatttagcca aatcagtcat tttcccttcg
     4621 ccttttttac cgtaagaata gtcgaaacca gctaccacat gctgtacatg caaagcgact
     4681 aaataattat ccacaaaggc ttgcggagat agctcggaaa actgtgttgt aaagcgaact
     4741 acatacataa tatctacgcc aagttcagcc attttttccg ctttatcttc aagtggtgtg
     4801 aggtatttca cttgtttgcg gatattactt aaaacaacgg atgggtgcgg atcaaaagtt
     4861 aatactgctg tttgaaggcc ttttttttca gcaatttgtt tcgctttttt aatgacagct
     4921 tgatgaccta aatgcacgcc atcgaaaaag ccaagtgcca ttactttgtt tatgtcagtc
     4981 cactcgtccg ttgtaatcgg atgatgtaag taaatcgtct tcatttttgc cacttctcct
     5041 ctaaattcga attcctctca tatcataata taagaaagct atagtcgcaa taactatgct
     5101 tgatgtaact cgatgacttt ttctggtttc caaagttcat ttttctctgg atgaggtttg
     5161 taaattgctg ttaatttatc attgaagata agtgcggcac gaggctcatt ctctacctct
     5221 ataaataatg attttggtaa aaggccgcca tttaaaactt tcgcatggat ttcttcatca
     5281 atcactaatt tggccatgga ttcaatgcct ttttcaagtg gatataaaaa gctgctatca
     5341 ctcgcttgca tcatttcgtc aatttctgcc agtgttaagc aatcttcttt tttgaaaaag
     5401 ccgctacgag tccgttctag tttggacatg tgcgctggat atcctaataa ttcaccaatc
     5461 ataactgcaa gtgtgcgaat ataagtacct tttccacaag atatttctaa ctgaaaagtc
     5521 ggattcgctt catttagcgt agcctcgcca tctaagcgag ttaacgaata aatatccact
     5581 tgcctggatg ggcgttccac ctctatacca gctcttgcat attcatacaa tttcttgcca
     5641 ttgactttta cagcagaaaa cataggggga atttgagtaa tttttccagt caatttagtg
     5701 agcgcggctt gaagttcatc agcggaaatg tctgctaatt ccttggtcat aaccgtttca
     5761 ccagtcgcat cttccgttgt agtcgatttg cctaaagtta tttctgctac gtagactttt
     5821 ccttcatctg ttacgtattc tgctagtttc gtcgcacggc cgatacaaat tggaagtaca
     5881 ccctctactt ctggatccag cgtgccagtg tgtccaactt ttttcgtatg taaaatcttt
     5941 cttaatttaa aaacgcaatc atgacttgtc atcccgcgtt ctttccacag tgggataatg
     6001 ccgttcatca agctcctcct tttaagaaaa aaagtttaag acaattccca cttatatccc
     6061 gtttgaatga gaagataaag ggactgcctt aaacttttat ttattattga tcgttattta
     6121 agtcgcgaag caattcatcg attcgatttc cgtaagcgat ggaattatct atttcaaaag
     6181 acatttctgg aactttacga agtcgaatac ggcaaccgat ttcagagcgg ataaagccat
     6241 gcgctttcgc aagtgcgagt aacgtatttt ctttttcctt atctgtacca agaatggaaa
     6301 tgaacacctt agcttcttgt aaatcaccag taacatcaac tcctgttaca gtaacaaaac
     6361 ctaagcgcgg gtctttaatt ttacgattta aaatatcgcc caattctttt ttcatttgct
     6421 cactgacacg atttgctcga acgttcaagt gtattcacct ctttttataa cttctccata
     6481 actgtctcgg cgcgttccca ctcaggaaaa gaatcaagaa aagcaagtac ttctctggct
     6541 tctttttctg cttggatgtg cgaggaagat acgatagcaa agctaatttc cgctcgctgc
     6601 cataaatcct gataatccgt ttcagcaatg gagatattga atttttgttt tgctctcgtt
     6661 actattcgtt tcaggatagc tcgtttttct ttgaggtttt gcggttcctg catgaaaaat
     6721 tcactaacga ctgattgaat cattttcttt caatttcttc cataacgtac gcttcaatga
     6781 catcatcttc tttgatatcg ttgaagtttt gtactgtgat accacattcg tatccttttg
     6841 caacttcttt cgcatcatct ttaaagcgtt taagtgtagc aatttcgcct tcaaagacaa
     6901 caattccgtc acggataata cgaacgccac tatcacgagt aattttacca tctgttacgt
     6961 aacagccggc aattgtaccc actttggaaa cattgattgt ttgacgaact tgcgcttgac
     7021 caataatttt ttcttggaat tctggatcaa gcatcccttt catcgctgct tcaatttcat
     7081 caatggcttt atagataaca cggtgtaaac gaatgtctac actttcgttt tctgctgctt
     7141 cacgagcttg agcggttgga cgaacattaa atccaataac aattgcatta gaagctgcag
     7201 caagtgtgat atctgattca ttgatagcac caacagcagt atgaataatt ttaacgttaa
     7261 caccctctac atcaattttg cgaagagatg cagcaagagc ctctacagaa ccttgaacgt
     7321 ctgctttaat aataacgtta acttctttca tttcgccagc tttcatatgt tcaaataagt
     7381 tgtctaaact tacgcggttg gttgcagaac gttgcgctac taacgcacgg cttgcacgag
     7441 tttcaccgat gtttcttgct gttttttcat cttcaaaaac aacaaagcga tcgccggctt
     7501 gtggtacatc atttaatcca gtgatttcaa ctggtgtact tggaccaact tttttcacgc
     7561 gacggcctaa atcattgacc attgcacgaa cacgaccaaa cgtgttacca acaacaattg
     7621 ggtctccaat attaagcgtt ccatcttgta ctagtagagt cgcaactgga ccgcggcctt
     7681 tatcaagttc tgcttcgata acagaaccga tagcacgacg atctggattt gcttttaatt
     7741 cttctacttc agaaacaagt aaaatcatat ctaacaagtt ttcaagacct tcaccgaatt
     7801 tagctgagat tggcgcgaaa attgtatcgc caccccatgc ttcaggaact aattcatatt
     7861 ctgttagttc ttgcattacg cggtcagggt ttgcttgtgg tttatcaatt ttgttgacag
     7921 caacaataat tggcattccc gcagcttttg cgtggttgat tgcttcaatt gtttgtggca
     7981 taacaccatc atctgctgct acaactaaaa tcgtaatatc cgtgatttgc gcaccacgag
     8041 cacgcattgc agtaaaggca gcatgtcccg gtgtatcaag gaaagtgatt tttttgtcat
     8101 ggatttcaag ttggtaagca ccgatatgtt gggtgatacc accagcttct cctaaagtaa
     8161 cttttgtatt acgaagggaa tctagtaatg ttgttttacc atggtcaacg tgtcccataa
     8221 tagtaacaac tggtgggcgt tcaacaagtt tagactcgtc aaccgcttca tttagttcat
     8281 tttcaaagta cacatctaaa tctgttacat cgactttaat ttcttcttct acttgtacac
     8341 cgtagtcgtc acaaattagt tcgattgcat ctttatctaa tgattggtta atcgttgcaa
     8401 caacaccaag cataaatagt tttttgatta gttcagatgg ttctctgtat aattttttcg
     8461 ctaattccgc tactgttaga gattcgctga acacaatttt ttcaggaagt tcttttggtt
     8521 ttggcggagt tggcggtact gtactgtggt ttagcttccc tttcttcttc gtgttacgac
     8581 ctttattatt aaaattgccg ccacgattcg ggcgattgtt accgcctgga cggtttggat
     8641 tgccgccgcc tggacgattg ctgttgttat tgttgttgcg tttttgtccg ccagcttgtt
     8701 gttggttacc acttgattgt gtttgtttac ttgtgtttgc tggtttgttt gtcgctggtt
     8761 ttgcaccttg gcttttgttt gcagttgctg gtttattagc ttgccctgct gggttatttg
     8821 gtttattcga cttttcatta ctatttgtca tatttggttt gtttggcccc ttactatttc
     8881 cattttcgtt gctagtagtt tctttctttg gtgcttcggc ttttttattt gtgccatcaa
     8941 tggcattatc taattgtctt aatgcatttt cattaatcgt ggacatgtga tttgccactt
     9001 caatacctaa gtcttttaat gcttcaatga cttttttgct tgatacttga tgttcttttg
     9061 cgtattcata tacacgaact ttactcatgt cgtacacctc cgtataagat tcaaccgagt
     9121 aattctgcta atttaacagc aaatccttta tcaagtatgg caactattgc acgtgtgtct
     9181 ttgccgattg caccccctat catttcccgg gtaccggctt ttttcacgac aacattgtag
     9241 tattcacact tgttgcggat tgttttctcg gttttttcgg atatatcttc tgaaatgaga
     9301 accatttttg ctttcccatt tctaactgct tttagtacta attcttcacc agtggtaatt
     9361 ttacgtgctc ggttagcgag gcctaataag gaaagtgctt ttttatccat tcgttggttc
     9421 ctcgagagac ttcacataag taattaactc atcataaaag gactcttgtt ccggcatttt
     9481 tagttgatga aaaatggcgt ttttcttttt cgctttttcg catacttcta cacttttaat
     9541 aatgtagaaa ccgcgtccag gtgctttgcc tgtaggatct atcgtaagcg ctccgtcttt
     9601 cgaatacgca atacgaagaa gttcgccttt tggcaagcgt tcaccggtaa taatacattt
     9661 tcgaaggggg atttttttat tacgcatgat aattctcctt tttactcttc atcttctgta
     9721 taagtttcgc tctctgcatc ttccacttct ggcgcttcta cgtcattacg aggatagatg
     9781 cctagttcag ttgcaactgt ttcactttta atatcaattt tccaaccagt tagttttgct
     9841 gctaaacggg cattttgacc acgtttacca attgctagtg ataactgata gtctggtacg
     9901 attaccgttg ttgcttggtc tgcttcgttc acaataacat ctaacacttt ggaagggcta
     9961 agtgcattgg ctacgaatgt gaaaggatct tctgaccatt caacgatatc gattttttcg
    10021 cctttaagtt cattgacgat cgtttggaca cgtgcgcctt ttggtcctac acatgcgcca
    10081 actggatcta cttcttcatt tgcagtgtaa acagagattt tagaacgatc tcctgcttcg
    10141 cgtgcaacag acttgatttc tacaacgccg tcatagattt caggtacttc catttcaaaa
    10201 agacgtttca gtaagccagg gtgtgtacgg gatacaaaaa tttgcggccc ttttgtcgtc
    10261 ttttctactt ttgttaaata tactttgatg cggtcatgtg catgataagt ttcgtttggc
    10321 atttgctcgt tttgggacaa aattgcttcg attttaccaa ggtttacata gataaaacga
    10381 gaatcttgac gctcaacaat accagtcata atatcatctt cgcgatcgat aaattcatcg
    10441 taaatgatgc cacgttccgc ttcacgaaca cgttgggtta caacttgttt cgctgtttga
    10501 gctgcgatac gtccaaaatc ttttggtgtt acttcaagct ccactacgtc acctggtttg
    10561 tatactggat tcagtttgtg tgcttcttcc atagagattt caaggcgaga atcaaatact
    10621 tgttctactg cttcttttct agctaaaaca cggatagaac cattttccat atttaaatct
    10681 acacgtacgt tttgtgcatc tttgaagttt cttttatatg cagaagtaag agcagcttca
    10741 attgcttcta ctaaaacctc tcttgaaata cctttatcat gttctaacac atgaagagca
    10801 tctaataatt ctgtgctcat tttttattca gctccttatt ctttgctttt taaaattgaa
    10861 ttgcgagtct tgctttggct actttgtctt taggaatttc acaagtgatt ttgcgtgttt
    10921 tgtccgtgat agtaataacg agtgttgtcc cgtcataact aacaagcgtt ccttcccaca
    10981 ttttacggcc atcaattggt tcatatgaag taacgtgaac atatttactt accgcatttt
    11041 caaaatcttg ctctttcttc agtggacgtt cagccccagg agaagatact tctaaaaagt
    11101 agttttgtgt aatggggtca ttttcgtcca ttttttcact aactttttcg ctcacggctg
    11161 cgcattcatc gatatctacg ccaccatctt tgtcaataaa aattcgtaaa aaccaatttg
    11221 gaccttcttt ttcaaaggca atatctacga gttctagttg aagttcatcc gtgattggtg
    11281 taacaattgc ttctacttgt tctagtactt tactcatttc agcctcctta agagatacgc
    11341 ttttccagct aattcgtccc ctacttctgc cacaggtgac tctttgacag atttgcaaaa
    11401 cgaaagcgtg ggcattggcc cacgcttggc tgagttatcg tagtatttct taaataagtt
    11461 tatcacaaat tgtgactaca agcaagtttt gccctttttt agaatagtga caactgattt
    11521 tgatcaggca atccttccaa gcatccttga tcatccatgt actgaatgat tgttttggat
    11581 acttttccgc gctgttgtaa gtcttctttc gacaaaaact ctccattttc acgagcggca
    11641 actatttgtt ttgctacatt ggttccaaga cttggaatcg cattgaatgg cggaataagt
    11701 gagtctccgt caataatgaa ctcatcagca gacgatttat acaaatcaac tttttggaaa
    11761 tggaatcctc gagctagcat ttcattcgca atttctaaaa cggttaataa gtttttctct
    11821 ttcgttgaag cttccatccc tttatcattt acttctttca tggttgcttt cacggcttct
    11881 tttccgttta ccatcgatgt taaatcgaaa tcatcggcac gaacggtgaa ataagttgca
    11941 taaaaatata gtggataatg tactttgaaa taagcaatcc ggactgccat taaaacgtaa
    12001 gcggcagcat gggctttggg gaacatgtat ttgatttttt tacaagattc aatgtaccaa
    12061 agtggcactt tattcgccat cattgcttct tccatttctt ccgttaagcc tttcccttta
    12121 cgcacagact ccatgatctt aaaggctaat gaactttcta gcccttgata aattaggaaa
    12181 accataatat catcacgaca accaattaca tctggcagtt cgcatgtttt gtttttgatt
    12241 aattcttccg catttccaag ccaaacgtcc gtcccgtggg aaagaccaga gatttgtact
    12301 agctcagaaa atgttgttgg tttagtttgt tctagcattt gtcttacaaa acgcgtccca
    12361 aattcaggga ttcctaatgt tcctgttttt gaatcaatat ctgcaggctt aacaccaagt
    12421 gactctgtag acccaaatag tttcatgaca tctggatcat cggttggaat cgtttttgga
    12481 tcgataccgc ttaaatcctg taacatccgg atagcagtcg gatcatcgtg tccaagtata
    12541 tctaatttta atacgttatc atgaatcgaa tggaagtcaa aatgggtcgt tttccattct
    12601 gagtccgtcg catcagctgg gaactgcacc ggtgtaaaat cgtaaacatc catataatct
    12661 ggaataacga taataccacc tggatgttgc ccggtagttc gtttaacgcc tgtacaccca
    12721 gcgacgagtc gatcaatttc tgccccgcga atagtcatat tcatatcgcg ttcataattt
    12781 cgaacataac caaaagcggt tttctctgca acggtaccaa tcgtccccgc acggaaaacg
    12841 taatcctcac caaaaatttc ttttgtataa gcatgggcta ccggttgata atcccctgag
    12901 aagttcaagt caatatcggg tactttatcc cctttaaatc ctaagaaagt ttcgaaagga
    12961 atatcttggc cttctttttg ataaggggtt ccgcagtgcg ggcaatcttt atccggtaag
    13021 tcaaaaccag aaccaaccga accatcatca aagaactcag aatccttaca attcgggcaa
    13081 agataatgtg gtggaagtgg gtttacttcg gtaatttccg tcattgtagc aacgaaagaa
    13141 gaaccaaccg atccccgcga accaaccaga tagccatcta caagtgattt cttaacaagc
    13201 ttatgtgaaa tgagataaat aactgcgaaa ccatggccga taatactttt cagctctttt
    13261 tctagtctag cttccacgat ttctggcagt ttctcaccat aaagttgatg tgccatcgca
    13321 taactcatat ttcgaacttc gtcttctgca ccatcaattt ttggtgtata taattcgtct
    13381 ttgattggtt taaggtcttc catccaatca acgactaaat tcgcattagt tacaacaatt
    13441 tcttttgctt tttcttcacc aaggaaggca aattctttca acatttcatc cgttgtacgg
    13501 aaatgaacat caggtaattc agcccgatta agcggatttg ctcctccttg cgaatggatt
    13561 aaaattttac gataaatttt atccactgga tctttgtaat gtacattacc tgttgcaacg
    13621 acaggttttc cagttttctc accgacgcgg acgatatttt tcaatatttc ttctaaagct
    13681 ttttcgtcac gaactagttc acgttcaata agcggtgcat aaactggctt cggttgaact
    13741 tcaatgaaat catagaactc cgctactttt tctgcagctt gcatcccttt ttgcatcatt
    13801 gcttcaaata attctccttg gctacaagca gttccaataa ttaagccttc gcgtaatttt
    13861 tttagctgcg agcgaggaat acgtggtacc cggtaaaagt aattaatatt ggacatcgta
    13921 attaatttaa agagattctt caaaccaaca gccgtttgtg cgtaaattgt ggcgtggaat
    13981 ggtcgcgcgc gcttgtatgc gtcgccttct cccatatagt catttaaaga atcgtgaaaa
    14041 tcgatgttgt gcatttcttt cgcatcttta attaacttcc aagccaaata cgctgtagct
    14101 tccgcatcaa aaacagcccg gtgatgttgt tcaagaataa tattgaattt ctttgtcaaa
    14161 gtattcaagc ggtgattttt aaaatgtggg taaagaaaac gtgctaattc taatgtatcg
    14221 acaaccgcat tttctgcttt ttctagtcca actttttcat aagcagtgtt aataaaaccc
    14281 atgtcaaaag aagcattatg ggccacaaga atatcatcac cgctccattc tttaaatctt
    14341 tttaaaacaa catcaattgg atcagaacct tttaccatgt catctgtaat accagttaaa
    14401 ttaatagtgg ttgcagaaag cgggtgtcca ggatcaataa aagcttcaaa tttatcaata
    14461 atttcaccat ttttcatttt tacgccagca agttcgataa tcgtatcata aacggcggat
    14521 aaacctgttg tttcaacgtc aaatacgcaa tatgttgcat cttccaaagc aatatgttga
    14581 tcgttataag cgattggcac accatcatct ataagatttg cttcgatgcc aaaaataacc
    14641 tttaagccat acttttgccc tgctccatac gcttctggga aagattgggc aacagagtga
    14701 tcagtaatag caatcgcttt atgtccccaa tcagcagctt gtttgaacag tgaatcaaca
    14761 gatgaagtgg catccatttg actcattgga gaatgaagat gtagttctgc gcgtttttct
    14821 tcagcagtat caagacgctt cactccagcg atttcattga catcttgcgc catcatgatt
    14881 aagtcccgca cgaaagtatc gttttgaacg cttcctctaa ctttaaccca catacctttt
    14941 ttcaaattct ggaacatcgc cgcatcctcg ttatcacgag aaaacatttt tataatcatt
    15001 gaacttgtat aatcagtaat tttgaattgt aacaaactac gaccactgcg aagctctcta
    15061 atttctgtcg cgaagattaa gccttgaacg gtaatacgtc gttcctcatc ataaatgtcc
    15121 ccaagacgtt taacttcttc atcgtcttta attttataac caatttggaa cggaccagtt
    15181 agtggagcag ctccaccgcc accgctttgc ccttctgctt gtcgtttttg cataacttgc
    15241 acagcttcag cggctttttt ctgatcttct tcttgtttgg ccagtgcaaa agctttatat
    15301 tcctctgttt cagactggtc aagcaagtgc attttcatgg caaggcgtgg aaatccagct
    15361 ttcccgtaac tttcaataat tttcgtctgg aatcgttgct gaatagtcgc ttcttccatg
    15421 tcattatgaa ccgctacttc aataaaatga ggttctttaa atgtaggttt ttgctccatt
    15481 aaaagctttc caatcatcgg tgactgcttc ccaattggct ctacgattaa gttccaataa
    15541 tcctgaatga gtgtttcgtc aattgtttga ttttctggaa caatttgcat ttctgtttcc
    15601 gcaatttggc tgaacgcacg cttcattcca acatccatca tatggaaaag tgctgctgga
    15661 aaaatttgtg gaacgtgtaa atgaaattgc catgttttat ttttcttgtc ggcaacgagt
    15721 ttttcgattt tagcatcttt tgtaaattct tcgtaagttg ttacatcttg taaaccgatt
    15781 tgtgtcatta acagctgaaa tcgttcttgt ttttcttcct cttttgcagt cattccgaat
    15841 aacacccctt catttaaatt tataaaagcc agatgtccct cataacccgt ttttatagga
    15901 acgagtgaag tttcatctgg cacgaattgc tcaataaatt atttatctcc aaagagtata
    15961 ggcagcgtgt ttagtaactc atcttgacga acttcaatca tttcgccagt ttttctgatt
    16021 ttcacttcaa ctacgccttc tgctgctttt ttacctactg taatacgaat tggtaagcca
    16081 attaaatctg catcagcaaa tttaactcca gcacgctctg cacgatcatc gattaacaca
    16141 ctgaacccag catcttgtaa agagctataa agtgtttcgg caaaagcaac ttgctcttcg
    16201 ctcttcatat taacgggaat taaatgtaaa tcaaatgggc taatttgttt atcccaaaca
    16261 aaaccatttt catcatttga ttgttcagca atggcagata aaatacgtga tacgccaatt
    16321 ccgtaacaac ccataataat tggctgtgct cgaccatttt catctaaaat agttgcattc
    16381 attgcttcac tatacttcgt tccaagtttg aaaatatgcc caacttcgat gccttcagca
    16441 aacttgatta cgccttgacc atctggagat aaatcaccaa cttgaatcat ccgtaaatca
    16501 aaatagctag taacggagaa atcgcgatct ggattcacgt taatataatg gaaaccatct
    16561 tcgtttgcac caactaccgc attaacgata tctttcacag cattatctgc aaagacgcgc
    16621 gtgttttcag gaacattgat tggtcctagg gaaccaaaat tagctcctaa tagttcaaca
    16681 gcaacagctg gatccactaa ttctacattg gttgcatcta atgcattttt gattttaata
    16741 tcatttactt catggtcacc gcgaacgaga accattatga cttcatcatc gacttgataa
    16801 agcatcgatt tcattgtttt ttcaattggt acttctaaaa actcaacgat atcagcaatc
    16861 gatttttgat caggagtcgc aactttctcc atatcttttt ctagttcatg cgattttttc
    16921 tccatatata aaactggagc catttctgtg ttggcagcat aatcggaagc atcgctataa
    16981 gcaattgtat cctcgccaat atcagataat gccataaatt cttttgattc attcccaccg
    17041 atagaaccag aatccgcaat aacagaacgg aactcaagac cacatctagt gaagatattc
    17101 gaataagctt ggtgcattaa gttatacact tcatccaaac tttcactggt tgcgtggaaa
    17161 gaataggcat ctttcattat gaattcgcga ccacgtaata gaccgaagcg tggacgtttt
    17221 tcatcccgga acttagtttg aatttggtat aaagtaagcg gcaaacgttt gtaagattta
    17281 acttcatcgc gtaaaagtgc agttataact tcttcatggg ttggcccaag cgcaaagtcg
    17341 cgagaagcgc ggtcttttag gcgcattaat tctgggccgt aatcgttcca acgaccagat
    17401 tcctgccaaa gttccgcagg ctgaagcgca ggcattaaca gttctgcagc gccaattgct
    17461 tctagctctt cacgaataat tgtttcgatt tttcgtaaca tcaatgttgc aagtggtaaa
    17521 taactataaa tcccactagc tgtttgtctt ataaaaccag cacgaagaag taattggtga
    17581 ctctttactt ctgcatccgc tggtacttct tttaatgttg gtataaatgt catcgtttga
    17641 cgcatttaaa acaccccttt ttccctttat tagtctatct cttttttaga aaaatgcacg
    17701 ttgaatatcg ttccatgtca caagaatcat cagaaccatt aaaagtgcaa atccagcaaa
    17761 atggataatg ccttcttttt tagggtcaat tggtttgccg cgaacgagtt cgtataagaa
    17821 gaacattaaa cgtccgccat ctagtgctgg taacggtagt aagttaacaa ttcctaagtt
    17881 aatacttaaa acagccgtcc agtttagtac agtcataaag ccatattgaa cgacttgttg
    17941 cgtacttgtg taaatcccta ctgggccatt tagcatatcg agcgaaaatc cgccagtaaa
    18001 catgtttcct agaatcgtaa atatttgtac aatccaattc catgtttgcg taaatccatt
    18061 cgtaatttta gcagtaaaag aggagtccat tggtgtctct acaccgattt ttcctacgtc
    18121 tttgccattt tctttttgtg ttgcgggttt gacatcgata tcttgtgtct tgccatctcg
    18181 ctcaattttg aagtcaagtg tttttccggg gttttccgaa acactttgaa caatatcggt
    18241 ccaagatttc gtttcttttc cattgatgga aagaacctca tccccttttt ttagaccagc
    18301 ttcagcagca gccccgtccg gtagaacatt cccaagcgta ttatcggtgc ttggaacgcc
    18361 cccttgtaca aaagcaagtg ctgtgaaaat taaaatagct aaaataaagt taaaaagcgg
    18421 tccagcaaaa atggtcattg cccggtttcc taatgattta gcattaaaag aacggtcata
    18481 tggcgtaatc atcgtttcga ttttaccatc aatcactaag gcatcacgct ctacctgata
    18541 gcgaactttc ttggtgtcat cgtaatcttc gtagccttca atgaaaagtt ctttctctaa
    18601 atcacagaga gaaacttcta ttggctgcgc gtttacatat tgatctttac cattaacaat
    18661 gattttgcta accgtttctt ccggagttaa ttctagccct actcggtaac caggttttag
    18721 ctcgatttcc tcgccatctt ccccagccat ccgaacgtaa ccaccaatcg gcaataagcg
    18781 aatcgtatat tgcgtttctt ttttacgata agcaaaaatt ttcggtccaa aaccaattga
    18841 aaagtctttt accataattc cagcacgttt tgcaaaaaga aaatgtccta gttcatggaa
    18901 aaatacaatc agtccgaata cgaaaataaa agcaataata gttgtcaaaa tagcttcacc
    18961 tctataaaag tgtctttaca tacgcgcgtg tttcttgatc gacttgtaaa atggtatcca
    19021 agtcagggtc agaaatgcta gtatgacgat tcattgcatt ctcaacaagt gcttcaatat
    19081 tataaaaagc cacctgtcca tttaaaaagc cagccacagc aatttcattt gccgcattta
    19141 aaactgtcgg cattgttcca cctattttac cagcattata cgcgagtttc aatgccggaa
    19201 atctttcata atccactttt tcaaaatgaa gtgcggaaaa atcagtaatc cggaattctt
    19261 tttcatacgg tatataaagt ctgtcgggat aggttaaagc gtattgaatt ggcatccgca
    19321 tatctggtgt accaagttgc gcaatgaaac ttccatccac gaactgaacc atagaatgga
    19381 taatactttc gcgctgtata acgacttcta tatcatcgta gtccacacca aacagccagt
    19441 gcgcctccat cacttctaaa cccttgttaa acatcgtcgc tgaatcaatt gttaatttat
    19501 tccccatatt ccagttcgga tgttttaacg cttctttcac cgtaacctcg ctgagttgtt
    19561 ccctcgtctt atctcggaaa cttccaccgc tcgctgtcaa aactagtttt tcgattcttt
    19621 ccgtattttc tccgtttaat gcttgtaaaa tagcagaatg ttcgctatca acaggtaata
    19681 gtgaaatgtt tttttctttc gccgcacgca tgactaaatg tccagccgta acaagcgttt
    19741 ctttattagc aattgcaatg gccttcccag cttcgattgc atctaatgtc ggaagtaagc
    19801 caacgctccc cataactgca tttaaaagca catctccatc taaataggtc gctacttctc
    19861 taagcccttc taaaccatta aaaaatttca cgtttgggaa ttctgcttct aatatcacac
    19921 gatctctcgt atgccaaaca gcgaccattt tgggtttaaa ttcttttata atcgccctac
    19981 cacgttccat attacgccca aaactaagcg caacaatttg aaatttttca gggttttcgc
    20041 gaatgattgc aagcgtttgt gttccaatag aaccagttgc acctagcaaa ataatttttt
    20101 tcattatccc atctccaatt aaataatttg aagtatatgt agcagaggta aaacgaacaa
    20161 caagctatca aagcggtcta aaataccacc atgccctggt aagattttcc cagaatcttt
    20221 tacaccataa aagcgtttca aagcagattc gaccaagtct cccaactgtc caaaaataga
    20281 aagaaaaact aaaagcgcta gtacgagtgc aatatttcct ggtagctcag caaaataata
    20341 aaagccccca gcaatgacaa gtgcacatac aatcccgccg ataaaccctt ccaccgtttt
    20401 gtttgggcta acattcggag ctaatttgtg ttttccaatc gcttttccaa taaaataagc
    20461 ccctgtatca gttgaccaaa caataaataa agcaaaaagt acatacatta acccagcttc
    20521 acgagttaat gccaagtaat ggaaaccaaa tcctgtataa aaagcggcaa ccatacaaat
    20581 accaacttga tcaaaatgga atttatttcg tgaaaataca gtattagcga gtaataaagc
    20641 cattaaaata aaaataactt ccatttcagt aatatgcagt gtatctaaaa agtccaaata
    20701 tctatctggc acgacaacta accacattaa tagtaaagta attatcccat tcatcgaaaa
    20761 aattcgttgt tttgtcatta caagtacttc atataaagca atcgttgcta gtaaaatact
    20821 taatagttca aatggaattc ctccgtagac aacgaatgga ataaaaaata taagcgcaac
    20881 aactgcagta ataattctcg ttttcaatct tttttcctcc ctagagccct ccaaaacgac
    20941 gtgaccggtt ttgatattca ataattgcct gtaaaaaatc ttcttttgaa aaatcaggcc
    21001 aatgtgtatc cgtaaaataa aactcactat acgccagttg ccaaagcata aaattactta
    21061 atctaagctc cccactcgtc cgaatcaaca agtcaggatc acccaaaccg ctactcatca
    21121 aatgatcatt taatttttct tctgtcagat catctgcact tttcccttta agctctaatt
    21181 ctttcatcgc ttctttggca gcagtaataa tttctgaacg tccaccgtag ttaagtgcaa
    21241 agttaagcgt aagccctgtg caatgcgctg tatcagctat ggctttctct acggcacgca
    21301 tcgtatgatt aggtaaattt tctctgtacc ccatcacatt aacacgaaca ttttcttcaa
    21361 tcaactctgg tacaaaagag tcaaaaaatt ctacaggaag tttcattaaa aaatccactt
    21421 catctgtagg tctcttccaa ttttcagttg aaaatgcata aagcgttaaa acatcgatgc
    21481 caattgcatt agcataacgt gtcactcgct ttacgacatc cataccttct ttatgcccag
    21541 caatgcgcgg caaaaaacgt ttcttcgccc accttccatt cccatccatg ataatagcta
    21601 catggcgcgg gataggcaaa tcttctgcaa gttcactatt taatatattt tcatcttgtc
    21661 gaaatagctt tttaaacatc ataaatcctc caattgatac acttcttaga gcatgtctat
    21721 acctataata acaaaaaaga atcaattaat gtactaaaaa ttccatgtga acagatgaga
    21781 gtttcatgag agcgatggaa ttgcccatta aaaaacattc ctaacccaac acatatggaa
    21841 agaattagga atgtcgcttc aacttaaaag gtgtttaacc ctatttgtta ctatttgtaa
    21901 aagtatcaat taaacttcta agatttccgc ttctttgtct ttcgtgatgc tatcgatgtt
    21961 cttgatgctt tcatctgtta atttttgaac gtcttcacca taagaacgca aatcatcttc
    22021 tgtgatgtcg ccattttttt ctagtttttt caattcttca ttagcttcac gacgaatgtt
    22081 acggacagca actttcgctt cttcagcttc ttttttcact tctttaacca actctttacg
    22141 acgttcttcc gttaattgtg gaatagataa acgtagtaca gaaccatcat tatttggagt
    22201 caaacctaaa tccgatttca aaattgcttt ttcaatttca cctaaaatag ttttatcgta
    22261 aggtgtaatt agtaacattc tagcttcagg aacgctgata gaagccattt ggttcactgg
    22321 agtagctgct ccgtaataat ctacagataa acggtcaagt agtgatgcat tcgcacgacc
    22381 agcgcggatt gtacctaatt gtcttgttaa tgcttgttct gctttttcca ttttttcttt
    22441 ggatttcgat aatacttctt tactcattat tttttccccc taacagtagt cccgattttt
    22501 tcacctaaaa taacacgttt aatattattg ccttgttctg taaacgagaa gacgattaat
    22561 ggaatatcgt tgtccatact tagagaggac gcagttgtat ccataacttc caatccttct
    22621 ttaatcacat caaggtaaga taactcttcg tattttttcg cattttcatc tagttttgga
    22681 tcagcattgt agacaccatc tacattattt ttcgccatta agataacatc tgcttcgatt
    22741 tcagccgctc taagtgctgc cgctgtatct gtggagaagt atgggttacc tgttccacct
    22801 gcaaaaataa cgacgcgacc tttttcaagg tggcgaatcg cttttcgacg aatgtacggc
    22861 tcagcaattt gacgcatgtc aatggaagtt tgtacacgcg ttgctactcc aatgttttca
    22921 agggaatctt gtaaagacaa ggaattcatg atagtcgcaa gcatacccat ttggtcggcc
    22981 gctgcacggt ccattcccat ttcactacca agtttaccgc gccagatatt cccgccgcca
    23041 acaacgatag ctacctctac tcctagttct actacttctt tgatttgagc agaaatcaaa
    23101 ttgaccacgc tcggattaat tccaaagcca tcatttccgg caagtgcttc accgcttaat
    23161 tttaatacaa ctcgtttata atctggggta tccataatag cctccatttt catattctat
    23221 tcatagatag aagagtttt
//
LOCUS       DASDXX010000022        23030 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.022, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000022 DASDXX010000000
VERSION     DASDXX010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23030
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.022"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1742
                     /locus_tag="U0280_000702"
     CDS             <1..1742
                     /locus_tag="U0280_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2270659.1"
                     /translation="KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL
                     TKLDVSHNTKLKSLSCVNAHIQDFSSVGKIPVLNNNLDAEGQTITMPKETLTNNSLTI
                     AVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTV
                     TTPFEAPQPIKGEDVTVHYLDDKGEKLAADEVLSGNLDDPYTSSAKDIPDYTLTTTPD
                     NATGTFTTTSQSVTYVYTKNIVAAEPVTVNYVDDTGKTLAPSETLNGNVGDTYNATAK
                     QIDGYTLTTTPNNATGTFNTSSQTVTYVYTKNIVAAEPITVNYVNDTGKTLAPSETLN
                     GNVGDTYNATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAPEKGVVEIHYVD
                     ENNKQLSSATKISGTVGDNYTTEPKNIDGYTLTTTPDNATGTFNTSSQTVTYVYTKNI
                     VAAEPVTVNYVDANGKTLAPSETLNGTIGDTYKATTKQIDGYTLSAEPTNATGQFTNS
                     AQTVNYIYTKNTNIDQPLPDKKTTKPSNLKTTEVKKASDTLPKTGDSTPWKSALLGVF
                     LSSTALVIWKKKK"
     gene            complement(1787..2110)
                     /locus_tag="U0280_000703"
     CDS             complement(1787..2110)
                     /locus_tag="U0280_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic metallochaperone ArsD family protein"
                     /protein_id="HEM2270660.1"
                     /translation="MKQISYFYSAENESEINLEIWKMFMNQSEDERKIHFDYTGIVFD
                     IQLGEVGKVDLPERVQMLIDKNGMEALPILVVDDAVYNYGEFSVIDAVEELLDVGVSI
                     QVEED"
     gene            complement(2118..3359)
                     /locus_tag="U0280_000704"
     CDS             complement(2118..3359)
                     /locus_tag="U0280_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 domain-containing protein"
                     /protein_id="HEM2270661.1"
                     /translation="MVNIRPFKAIRPIKNLAEKVASLPYDVLNSEEARELGDANKYSF
                     LHIDKAEIDLDPAVSPYDPAVYQKAADNLEQFELDGWLGREANPAFYIYQLTMDGRPQ
                     TGLVVCTSIDDYTNGKIKKHELTREEKELDRIRHVDVCDANTSPIFLTYRGKEAINAL
                     VESWVNENEPEYDFESFHGVAHKVWAITDAHILEDLSAAFSEVPALYIADGHHRTESA
                     VKVGLKRREEFPEAGPEAEFNFFLSVVFPEEQLEILDYNRVVNVPIEADFLSKVEASF
                     DVEKVGKEAFKPEKPKQVGMYLDGNWYKLTAKSEVIPNDVIGQLDVSILQSQVLTPIF
                     GIEDIRRDNRIDFVGGIRGLEELTRLVDNGSYSVAFAMYPPTMDDLLGVADAAEIMPP
                     KSTWFEPKLLSGLFVHDLESK"
     gene            complement(3448..4635)
                     /locus_tag="U0280_000705"
     CDS             complement(3448..4635)
                     /locus_tag="U0280_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEM2270662.1"
                     /translation="MFNIQTFNAIAKEGLKTFDLEKYVIDANQPADGILLRSYNLHDF
                     DFPETVKAVARAGAGVNNIPVENCSEKGIVVFNTPGANANAVKELVLASLFVSARPIL
                     EGTEWVKELPAEDDVEQKVEAGKKAFAGTELAGKKLGIIGLGAIGALVANDALSLGMD
                     VVGYDPFVSVDTAWRISKEVERAMTIEEVLATCDYLTVHVPLTDKTRGMFNADTLQLV
                     KDNAVLLNFSRGELVDSASVKEALDDGLLRLYITDFATKELLNHKKVHVFPHLGASTE
                     EAETNCAKMAAKELQSYLETGSIKNSVNFPNVEMPYNGHPRIGICHKNIPNMVGQITT
                     ELGKYSLNILDMINRSKNEYAYTLIDIDKETQANLEQLKSDLLAVQGVLRVRVIEPLG
                     VTV"
     gene            complement(4628..5719)
                     /gene="serC"
                     /locus_tag="U0280_000706"
     CDS             complement(4628..5719)
                     /gene="serC"
                     /locus_tag="U0280_000706"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEM2270663.1"
                     /translation="MERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSE
                     LFQNILDDAESLIRELMEIPENYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWA
                     KKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDAAYLHVTTNNTIEGTAMFDV
                     PDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLP
                     SMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYNYID
                     QSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVQEAEANGFKNLKGHRSVGGMRASLY
                     NAFPIEGVEALIAFMEKFANARKGGEVRV"
     gene            complement(6090..7238)
                     /locus_tag="U0280_000707"
     CDS             complement(6090..7238)
                     /locus_tag="U0280_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2270664.1"
                     /translation="MENKTRLWTKDYVFLLLGSVLLYIGFMVFMPTLPARIIELGGTQ
                     MEASLAVGLFSIVALLMRAIAGSWNDKFGPKVLIIVGFLILILTTVNFYWSTAVAALL
                     ILRLFHGAGWGIGTTSIATGVSKLVPPSRTGEGIGFYGLTTALGMSLAPIIAILIMNY
                     FSFDVLVTFSLVLMVFILILMTQVKIPKSEKIVHQKMKLFEKTALLPAGLCLLMAIPL
                     GGIQTFMMVYGTELGISTTWIYFIGQAIMVLVSRLFAGRLYDTKGHRFVIIPGALSMI
                     IGILILSFATGAISLFIASLFFGLGYGMSQPALQALAVDRAAPHNKGTANGTFLSGMD
                     IGMAVGSFGLSIVATYYNYAIMYRTAIIALVVFFAVYWFTLGRKVKNS"
     gene            complement(7252..7674)
                     /locus_tag="U0280_000708"
     CDS             complement(7252..7674)
                     /locus_tag="U0280_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2270665.1"
                     /translation="MRGYYDEISFDVNTTAKKMHLFLLRSIASYDVTPEQWSVLEGIE
                     ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELVVREVSTEDRRISLLSLTDKGRKET
                     NELRDIVEASCERMFAGISRADLEQFTAILKNISTNIE"
     gene            complement(7777..8130)
                     /locus_tag="U0280_000709"
     CDS             complement(7777..8130)
                     /locus_tag="U0280_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270666.1"
                     /translation="MVTAIQKEQVRTEKNAAFLTSRPEVDYLERESFFITLKDAIKRE
                     WVVRLKYFQEADVSSLRLAPFEYPSAFLGLGEIETQDLVPLEIDMLTEEVILKDIVGY
                     EYVIEFRDIIDVELL"
     gene            8324..8923
                     /locus_tag="U0280_000710"
     CDS             8324..8923
                     /locus_tag="U0280_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM2270667.1"
                     /translation="MTNTFLDSIKVRRSIYALDKNVSVEDSKIEEIIKDAVKYSPSSF
                     NSQSSRAVILLGENHDKLWNIVEDTLRAIVPAENFAATEEKVGSFRAGYGTVLFFEDT
                     AVIEGLQENFALYADNFPVWSEQSSGIAQHSVWVALANAGIGASLQHYNPLIDDAVKA
                     EWNIPASWNLRAQMPFGNIVQEAGEKEFIDDADRFRVFK"
     gene            complement(8981..9301)
                     /locus_tag="U0280_000711"
     CDS             complement(8981..9301)
                     /locus_tag="U0280_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2270668.1"
                     /translation="MAIIFAKEENLEEIISSHPKILLNFWAEWCAPCRCFWPTLEQFA
                     EMEEGNVQVVKINVDKQRALAQKFDVKGIPNSLVLVDGEIKGGIAGIVSCDELRSRFK
                     SLAK"
     gene            complement(9424..10086)
                     /gene="pgmB"
                     /locus_tag="U0280_000712"
     CDS             complement(9424..10086)
                     /gene="pgmB"
                     /locus_tag="U0280_000712"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HEM2270669.1"
                     /translation="MTTALKGVVFDLDGVITDTAHYHYLAWKKTAESIGIEFDEAFNE
                     KLKGVSRIDSLLLILKKDGRENDFTEEQIEALAADKNDFYVSLLKEITPADVLPGIKE
                     LIVDLKKQNLKCAIASVSKNARTVLSALEMEQEFDYIVDAAKITKSKPDPEIFVEACR
                     GLGLETSEVVGIEDAQAGIEAINAAGIVSVGVGSGLRDADMTVKNTGLLDLRILEILH
                     SK"
     gene            complement(10083..11204)
                     /locus_tag="U0280_000713"
     CDS             complement(10083..11204)
                     /locus_tag="U0280_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM2270670.1"
                     /translation="MKIVIAPDSFKESLTAHEVAEYIKEGFQEIYPDADYHLLPVSDG
                     GEGTLEILSKALGAKKMKIDVSGPFGDPVSAQVAFTDGNKKALIEMAEVCGLHLVPTT
                     RRDPLQVSTKGVGELILHAMEKGATEIIIGIGGSASNDGGIGMASALGYEFLDAENNI
                     VNPIGANLADIATIRSEKVPAELENITVNIVTDVENPLCGEAGASYVFGPQKGLAVTD
                     LATADGAMRQFYQLANPAMVTMPRAGAGGGIGAGLVTFAKANLLSGIDFVIEALQIKT
                     VCEDADLVIVGEGKMDGQTAQGKAPVGVAKVVPKETPVFAICGSVGEGLEAVYEVGIS
                     AVFPSIAKPATLENILKETPNNLRRTARNVAAVWKGRVE"
     gene            complement(11201..13378)
                     /locus_tag="U0280_000714"
     CDS             complement(11201..13378)
                     /locus_tag="U0280_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEM2270671.1"
                     /translation="MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRG
                     MYVAGIYNRPSGSLSSELVNLPDVTRFQVMLDGENFSMQAGKVHAYERYLDMNTGELI
                     RKITWESSAGKKYQLNFHRFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFG
                     TQQLAELSLRIFDEKLMVGEYETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIA
                     ENQLFTLEKISMVKTSLDQVDAELPNTTYAELKRASETLWADFWEHAGVRVESTNDFD
                     QFALDFACYHLEIMTPKDDFRCSVGAKGLTGEGYKGHVFWDTEIFIMPFFLYNKPEIA
                     KQLLKYRYLHLKEAKEKATKNGYNGALFPWESAFSGEEETPEFAAINIRTGTRQKVAS
                     AISEHHLVADIAYAVCEYETATKDAQFMKECGSELLLETAEFWLSRATNRNGRLEILD
                     VIGPDEYTEHIDNNTYTNYMAHYNVKKALEWNKDNADFVARAEAFLEKIYLPVANESG
                     LIPQDDTFLEKDWINLDKYKAAQGTQGILLDYSRQEVNELQILKQADLVMLFYLFPRM
                     FAPDAVKQNLDYYENRTIHDSSLSKAIHAIVENRTGNRAQAYQFFQEACLIDLGSEPH
                     SSDDGLHAASLGAIWLAVVFGFAGIDTSGELLEIAPNIPDSWQSVAFEFSWKGEKILV
                     EIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQKDVSL"
     gene            complement(13375..14406)
                     /locus_tag="U0280_000715"
     CDS             complement(13375..14406)
                     /locus_tag="U0280_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2270672.1"
                     /translation="MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEF
                     RANNGFEKHYATAEEMFAVEKIDIISICTPNRFHFDNVMLSLANGAAVMCEKPPAMSA
                     AEAKAMWELAEEKGAILAYDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGW
                     GTFTNKEMQGGGPLIDMGIHMLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWD
                     PEKYTVEDSLFGFIELENGGLIELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYT
                     DNAGEFQLLEKLGQLEENKHENSMKAFVDSVLGAGKVELAGAEQGYIIQRIVESLYES
                     AEKGESVSL"
     gene            complement(14463..15257)
                     /locus_tag="U0280_000716"
     CDS             complement(14463..15257)
                     /locus_tag="U0280_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2270673.1"
                     /translation="MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEV
                     KKAIEKTGLPVSTACGGYDGWIGDFIEERRLNGLEEIKAILEALAEVGGQGIVVPAAW
                     GMFTYRLPPMVSPRSQAGDFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLS
                     DAQKYIDENELKNVEIIADFYHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGS
                     LDFKTSFDQLKKNGYNGFLTFECRVRSENPEQAYKDALAHLKSCLI"
     gene            complement(15270..16322)
                     /locus_tag="U0280_000717"
     CDS             complement(15270..16322)
                     /locus_tag="U0280_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="HEM2270674.1"
                     /translation="MKKLVATAPRVAELVEYNDREVLEDEVKIKVQFASPKHGTEVVD
                     FRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVECGSKVTEYELG
                     DIVCSYGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYDPAQFAMSGVRDAHVRAGDY
                     VVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEV
                     KRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNN
                     AKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMK
                     YVDQQPDLSIKMGITL"
     gene            complement(16341..17192)
                     /locus_tag="U0280_000718"
     CDS             complement(16341..17192)
                     /locus_tag="U0280_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2270675.1"
                     /translation="MAVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKE
                     AISTHPTFFPKEFTFQHYIDIFNPDIFPFLTYFKNSLVVSVFAAGIAVVLGILGAYAL
                     SKLRFKGRMTINASFYTVYMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTA
                     VFMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYL
                     FASIFLSSAEKFTLPIGLNTLFSTPDYIWGRMMAASLVTALPVVIMYAISERFIKGNL
                     TDGGVKG"
     gene            complement(17179..18060)
                     /locus_tag="U0280_000719"
     CDS             complement(17179..18060)
                     /locus_tag="U0280_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2270676.1"
                     /translation="MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDM
                     PLNPNIKSVFIGLQNYIDILKDPEFYKSLGLTVAYTVLVVVGSTGMGLLVAIFFNREF
                     RFRRTARSLIILSYVTPSISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPV
                     SSFFLVTFFAIWRYFPYAFISFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMP
                     VLATVITLRAIWMFYMFTDVYLLTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVII
                     FVVIIFARKRVDLNGGK"
     gene            complement(18136..19428)
                     /locus_tag="U0280_000720"
     CDS             complement(18136..19428)
                     /locus_tag="U0280_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2270677.1"
                     /translation="MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKE
                     RLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVVTLARSGKLPAVMEVSQDFAKVM
                     DKDELIDQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKAL
                     ADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLD
                     AKGNVTIDTPEMKEALQYYKDLSAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSV
                     YEEGDPKNIGFAIPEEKEKAVYGTVSGLTISAGLDDEQKKATKKFVEYLSQPENMATW
                     VLMSPGGAQPVNKEVVEQKAYKENEVIKSFGELPNEIAASFNDIQVFGLVDGKNLTKM
                     GDITSSGIIAQMVNNVTVGGGDVSADLKAAQKKAEEGK"
     gene            complement(19425..21125)
                     /locus_tag="U0280_000721"
     CDS             complement(19425..21125)
                     /locus_tag="U0280_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HEM2270678.1"
                     /translation="MTNLRKRLSRLYAEDVVDSLAARIEARVQQTQQRKLTRKDQWDE
                     KDIVLITYGDQFKEESKKTLKTFKKMYDSYLKSTFEVVHFLPFYPYSSDDGFSVIDYK
                     AVNPELGDWEDIKEMEQSARLMFDFVCNHMSAKSDWFKRYLAGDEEFRNFFVEMDPKM
                     DLSSVTRPRATPVLTPFQFDSGKVGHIWTTFSEDQIDLNFASPEVLYKMIDVLMFYLE
                     EGAEYVRLDAVGFMWKVPGTSSIHLEETHEIVKLFRDLVDIAAPGTIIITETNVPHVD
                     NISYFGNGEKEAHMVYQFPLPPLVLHAIHHGNAEFLRNWAKNLELPEGKRTFFNFLAS
                     HDGIGLNPVRGIIPEAEILALVNDLEEEGALVSYKQNPDGSKSPYEINVTYMDALSKQ
                     ADTDDLRMSRFLVAHAVLMSIPGVPAVYVQSILGSRNDYSGVETTGHNRSINRKKYDL
                     AEITAELEQRGSLRKATYDALTKLISTRKAESLFHPEIPMEVLESTAELFVVKRSSDV
                     ESIILIHNLSEKEVSYSLDSGVYTNLYTGSTVTGSDSIKLSGYEFCWLKTKNYREEQK
                     "
     gene            21350..22375
                     /locus_tag="U0280_000722"
     CDS             21350..22375
                     /locus_tag="U0280_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2270679.1"
                     /translation="MASTIYDIAKHAGVSKSTVSRVLNNQANISEESRKKVLEAIDEL
                     NYQPSKLARALTSSGFDAIMVISNRSTTTTTGNPFFSEIIQSISTQAELENFDLILQT
                     AKNSEDELKKCLSKIQEKMIKGIIMLSSPADEDFFHQLDPYNIPIVVTGKVEGHYKNI
                     YSVDTDNFGDSYALTKHLIKQGHQKIACIHAPLDYHVSIDRLAGFRSCLFDHQLDLRN
                     DWIIDSGYSIEDSYKAALRLMEGPDKPTAVFATDDLKVLSIYKMAADKNLQIPADFSV
                     IGYNDKVASSFLSPPLTSIDIPINKLGKKATNLLFRLIHQDKNVPKTTIIKTEMIERE
                     SIQKINV"
     gene            22396..22468
                     /locus_tag="U0280_000723"
     tRNA            22396..22468
                     /locus_tag="U0280_000723"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22429..22431,aa:Val,seq:gac)
     gene            complement(22512..>23030)
                     /locus_tag="U0280_000724"
     CDS             complement(22512..>23030)
                     /locus_tag="U0280_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEM2270680.1"
                     /translation="NEVDSHFSNTSIQIVEDNKDLNELSIIYKATISDPYIVENKKRY
                     LHFWNWNNFIDDGAEKHFHKDFPYWIDRNVIKTELHLTTDKSIDQQERYTRQECDIKS
                     KYLNHRMTKKIHKNGASCYLEYRPYHNLTIKEKDLEEYVEANKEILKSNWGIGIDIIE
                     DGLFKKLGKLFK"
BASE COUNT         7034 a         5400 c         3634 g         6962 t
ORIGIN      
        1 gaaaaataaa agagcttgat gtcacgcata atacacaatt atatttatta gactgccaag
       61 ccgctggtat aacagaattg gatctttcac aaaaccccaa attagtctat ttgtatttaa
      121 ataatactga actaacgaaa ttagacgttt ctcataacac aaagctgaaa agtttgtctt
      181 gcgtaaatgc tcacatccaa gacttctctt ctgtaggtaa aattcctgtc cttaacaata
      241 acttggatgc tgaagggcaa acaatcacga tgcctaaaga aactttaaca aacaacagtt
      301 taaccattgc agttagtcct gatttattag atcagtttgg aaatccgatg aatattgaac
      361 cgggagacgg cggtgtatac gatcaagcaa caaatacaat aacttgggaa aatctcagca
      421 cagacaatcc agccgtaacc tatactttca cttccgaaaa cggagctata gtaggaaccg
      481 taacaactcc atttgaagcc cctcaaccca tcaaaggaga agacgtaaca gttcattatc
      541 ttgatgacaa aggagaaaaa ttggcggctg atgaagtttt aagcggtaat ttggacgatc
      601 cttatacttc tagcgcgaaa gacatcccag attatacatt aacgactact ccagataacg
      661 ccactggaac attcactact actagccagt ccgtaacgta cgtgtacact aaaaacatcg
      721 tagccgcaga gcctgtaaca gtgaattacg tggatgatac tggaaaaaca ctcgctccat
      781 ccgaaacatt aaacggaaat gtaggcgaca catataacgc cactgccaaa caaatcgacg
      841 gctatacatt aacaactaca ccaaataacg caaccggaac attcaacaca agtagccaaa
      901 cagtgacata tgtgtacact aaaaacatcg tagccgcaga gcctataaca gtgaattacg
      961 tgaacgatac tggaaaaaca ctcgctccat ccgaaacatt aaatggaaat gtaggcgaca
     1021 catataacgc tactgccaaa caaatcgacg gctatacatt atccgccgaa ccaaccaatg
     1081 caactggaca attcacaagt agcgcgcaaa ccgtcaacta tatttacaca aaaaatccag
     1141 cccctgaaaa aggagttgta gaaattcact atgttgacga aaataataaa caactgagct
     1201 ccgccactaa aatttctgga acagtaggag ataattacac aactgagcca aaaaatatcg
     1261 acggctatac gctaacaact acaccagata acgcaaccgg aacattcaac acaagtagcc
     1321 aaacagtgac atatgtgtat actaaaaata tcgtagcagc agagcctgta acagtgaatt
     1381 acgtggatgc taatggcaaa acgctcgctc catccgaaac cctaaacgga actattggcg
     1441 acacatataa agcaaccacc aaacaaatcg acggctacac attatccgcc gaaccaacca
     1501 atgcgactgg acaattcaca aatagcgcac aaactgtcaa ctacatttac acgaaaaaca
     1561 caaacatcga ccaaccttta ccagataaaa aaacaacgaa accgtctaat ttaaagacaa
     1621 ccgaagtgaa aaaagcttca gataccctac caaaaacagg cgattccaca ccatggaaat
     1681 cagctctact tggggtcttc ctatcatcca cagctctagt tatctggaaa aagaaaaaat
     1741 agtaaaaaag ccggccagga ttaatttccc gaccggcttt ttgatctcaa tcttcttcca
     1801 cttggataga aacacccaca tccagtaatt cctcaactgc atcaatcaca gaaaactccc
     1861 cataattgta tactgcatca tctacaacta aaatcggcaa agcttccatt ccattcttat
     1921 caatcaacat ttgaacccgc tctggcaagt ccactttccc gacttctcct agctgaatat
     1981 caaacacgat gcctgtataa tcaaaatgga tttttcgctc atcttcactt tgattcataa
     2041 acattttcca tatctctagg ttaatctcag actcattttc cgcagaataa aagtaactaa
     2101 tttgcttcat attaaaatta tttactttct aaatcgtgga caaacagccc gcttaataat
     2161 tttggttcaa accaagtcga ttttggcggc atgatttctg cggcatctgc cacaccaagt
     2221 aaatcgtcca ttgtcggcgg gtacatcgca aatgccaccg aataacttcc attatccacc
     2281 aaacgagtta gctcttctaa tccacgtatt ccgccgacaa aatcaatgcg attgtcgcga
     2341 cgaatatctt caatcccaaa aattggcgtt aaaacttgcg attgtaatat tgaaacatcc
     2401 agctgaccaa taacatcgtt tggaatcact tcgcttttcg ccgtaagttt gtaccaattt
     2461 ccatctaaat acatccctac ttgttttggc ttctctggtt taaatgcttc ttttccaacc
     2521 ttctccacgt caaaactagc ctctactttg ctaaggaaat ccgcttcaat tggcacattc
     2581 acaaccctat tataatcaag aatttctaat tgctcttctg ggaaaacaac tgataaaaag
     2641 aaattaaatt ctgcttctgg cccagcctct gggaattcct ctcgccgttt caaaccaact
     2701 ttcacagcag attccgttct atggtgaccg tctgcgatat atagcgctgg gacttccgag
     2761 aacgccgctg acaggtcttc taaaatatgt gcgtccgtaa ttgcccaaac cttatgcgcg
     2821 accccgtgga agctctcaaa gtcatattca ggctcatttt cattcaccca agactcaaca
     2881 agtgcattaa ttgcttcttt tccacgataa gtaaggaaaa tcggacttgt atttgcatca
     2941 caaacatcta catgacgaat ccggtctaac tctttctctt cacgagttaa ctcatgtttt
     3001 ttaattttcc cattggtata atcatcaatc gacgtacaaa caaccagccc tgtttgcggg
     3061 cgaccatcca tcgtcagttg ataaatataa aatgccgggt ttgcttctct accaagccaa
     3121 ccatccaact caaattgttc caaattatcc gctgcttttt gataaacagc tgggtcgtaa
     3181 ggggaaaccg ccggatctaa atcaatttcc gccttatcaa tatgtaaaaa agaatactta
     3241 tttgcatcac caagttcgcg cgcctcttcc gaattaagta catcatatgg caaggaagcc
     3301 accttttccg ctaaattttt aatcggacga attgctttaa atggacgtat atttaccatt
     3361 gttatcctcc tttttagtaa aagagcatga acccgtctgg caataaccat aaagtttcat
     3421 gctctcatta tttcccgggt aataatttta aaccgtaaca cctaatggtt caataactcg
     3481 aacacgcaaa accccttgca cagctaataa atcacttttc agttgttcca aattagcttg
     3541 cgtttcctta tcaatatcaa ttaatgtgta ggcatattca tttttactgc gatttatcat
     3601 atctaaaatg tttaacgaat atttccctag ctccgtcgta atttgtccga ccatattagg
     3661 aatgtttttg tgacaaattc caattcgcgg atgtccatta tacggcattt ccacgttcgg
     3721 aaaattaacc gagtttttaa tactacctgt ttcaagatat gattgcagtt ctttcgcagc
     3781 cattttagca cagttggttt cggcttcttc cgtcgatgca cctaaatgag gaaatacatg
     3841 cacttttttg tggtttagta attcttttgt cgcgaaatct gtaatatata aacgtaaaag
     3901 tccatcatct aaagcttctt tcacagaggc tgaatccact aactcaccac gagaaaagtt
     3961 taataaaaca gcattatcct tcactaattg tagtgtatct gcgttaaaca tgccacgtgt
     4021 tttatccgtt aaaggcacat gaactgttaa ataatcgcat gtggccaaaa cttcttctat
     4081 cgtcatcgca cgttccactt ctttagaaat tctccaagcc gtgtctactg aaacgaatgg
     4141 atcgtatcca accacatcca tcccaagcga taaagcgtca ttggctacca atgcaccaat
     4201 tgcgcctaga ccgataatcc caagtttttt gccagcaagt tctgttcccg caaaggcttt
     4261 cttcccagct tcgactttct gctcgacatc atcttccgcc ggtaattctt tgacccattc
     4321 cgttccttcc aaaattgggc gcgccgaaac gaataaactc gcaagaacta gttctttcac
     4381 agcattggca ttcgcgccag gtgtattgaa tacaacaata cctttttcag aacaattttc
     4441 tactgggata ttattaactc ctgcaccagc tcgggcaact gccttcactg tctccggaaa
     4501 gtcaaaatcg tgtaagttgt aactccgtag taaaatcccg tctgctggct gatttgcatc
     4561 aatcacatat ttttcgagat caaatgtctt taagccttct tttgcgatag cattaaacgt
     4621 ttggatatta aacacgtact tctccccctt ttcttgcatt tgcaaatttt tccataaagg
     4681 cgattagagc ttccacccct tcaattggaa atgcattata aagacttgct cgcataccgc
     4741 ccactgagcg atgtcctttc aagtttttaa aaccatttgc ttcagcttct tgaacaaaag
     4801 ctttatcaaa ctccgctgaa ttcgtcacaa aaggaacatt cgtgagcgat ctagcagaag
     4861 gttcgaccgg tgaagaaaag aaatccgatt gatcaatata attatataat aaggccgctt
     4921 ttttgcgatt caacgcttca attccagcaa cgccaccttg ctccttaatc cattcaaata
     4981 ctaattttgc tacataaatg gcaaatgtcg gtggtgtgtt atacatggaa tcattctcgg
     5041 cttgtacttt aaaatctaac atagaaggaa gtccctctac ttgccctatc aagtcttcgc
     5101 gcacgatgac aagcgttaat ccagcaggcc caatgttctt ttgcgctcct gcataaatta
     5161 agccaaattt tttcacatca taaacgctcg ataaaatatt ggaggacata tccgcaacga
     5221 ccgggacagc tgagtctggc acatcaaaca ttgctgttcc ttcgattgta ttatttgtag
     5281 ttacatgtaa gtaagccgcg tcactagaaa ctgtaggaat ctcaggaata tagctgaaat
     5341 tgcggtcttc cgatgaggca attacttcca cctctacacc ctgaattttc ttagcttcgg
     5401 aaattgcttt cttcgcccaa gatccagtgt ttacatacgc tgcttttttg ccatttgcaa
     5461 gattcattgg caccatatca aattgcaaac tcgcgccacc ttgcaaaaat agtactttgt
     5521 aattttctgg aatctccatc aattctcgaa ttaagctctc cgcatcgtct aggatgtttt
     5581 gaaataattc tgaacggtga ctcagctcca ttactgacat tcctgaacca ttgtaagaga
     5641 gtagctccct ttgaaccttt tcaagtaccg gtactggtaa aactgccgga cctgccgaaa
     5701 aattataaac acgttccact caacatctct cctgtcttca aatttcccca attacttaca
     5761 aaaattttca ccaataatcg aatacttatt ggccagatat gagccttcct cgttacactt
     5821 atgcttttcg aagttctgtt gttaagaaat aaaaaagccg aacctgtgat attctacaca
     5881 atattcggat ttttcagcgc ttaaaagtaa acactgcctt ttgtactttt gtatattata
     5941 gcagaaacag agctgttttt cagaaaattt atactaaatc tacaaataaa tgtgatgttt
     6001 aaactttctg acattaaaaa agcacgagaa accgctattt aaagcaattc tcgcacttct
     6061 actttttgaa aaacacttca caaaagatgt tagctatttt tcacttttcg tcctaaagta
     6121 aaccaataca cagcaaaaaa tacaacaagt gcaataattg ctgtgcgata cataatagca
     6181 taattgtagt aagtcgcaac aatactcaaa ccaaaactac caacagccat tccaatgtcc
     6241 attcccgaaa gaaaagtccc gttcgcggta cctttattgt gcggtgcagc ccggtccaca
     6301 gccagtgctt gaagcgccgg ttgcgacatc ccgtaaccta acccgaagaa taacgatgcg
     6361 ataaacaagc tgattgcacc agttgcaaaa gaaagaatta atatcccaat tatcatcgaa
     6421 agcgctcctg gaataataac aaaacggtgt cccttcgtat cataaagtcg cccagcaaac
     6481 aaacggctta caagaaccat aatcgcttgc ccgataaaat atatccacgt tgtcgaaatc
     6541 cccagttctg ttccatatac catcataaat gtctggatcc caccaagcgg aatagccatt
     6601 aataaacaca agcccgccgg aagcaaggcc gttttctcaa acaatttcat tttttgatgt
     6661 acaatctttt ctgattttgg aattttcacc tgtgtcatca aaattaaaat aaacaccatc
     6721 aaaacaagcg aaaacgtcac taaaacatcg aaagaaaaat aattcataat taaaatagcg
     6781 ataatcggcg caagtgacat tccaagtgca gtcgtaagcc cataaaaacc aataccttct
     6841 cccgttctgc ttggtggcac gagtttagaa acgcctgtag caatagaagt tgttccgata
     6901 ccccagccag ccccgtgaaa aagccgtaat ataagtaagg ccgccaccgc cgttgaccaa
     6961 taaaagttca ctgtagttaa aattaaaatc aaaaagccca cgataataag tactttcggt
     7021 ccgaatttgt cattccaact cccagcaatc gcccgcatta atagtgctac gatggagaat
     7081 agccccaccg ccaaactcgc ttccatttgc gttccaccta gctcaataat gcgagccggc
     7141 aacgtaggca taaacaccat aaatccaata tataaaagta cactgcctaa caataaaaat
     7201 acgtagtcct tcgtccaaag tcttgtctta ttttccaaaa tttacccctc tttactctat
     7261 attagtagaa atgttcttta aaatagccgt gaattgttcc aaatctgcgc gagaaatccc
     7321 agcaaacatt ctttcacaac tcgcctccac gatatcgcgg agttcattcg tctcttttct
     7381 ccctttgtcc gttaaagata aaagtgaaat ccgtctatct tctgtactca cttcccgcac
     7441 aacaagctct ttcctaagta aaacatcgac aatccgattc acggttggcg tgtccttttt
     7501 cgtccaaaga gcaatctctt tttgcgaaat cggctcgttc gcctcaatcc cctctaaaac
     7561 cgaccattgc tctggtgtca catcataact tgcaatcgaa cgcagcaaaa ataaatgcat
     7621 tttcttcgct gtcgtattta catcaaatga tatttcatca taatatccgc gcatatttat
     7681 cctcatttct attgtcgtaa caataattgt cataacaacc attatacata ctgattactt
     7741 ttttgacaag aaaaacagtc gaataaacga ctgttcctac aataattcca catctataat
     7801 atctctaaat tcgattacat actcataccc aacaatatct ttcaaaataa cttcttccgt
     7861 taacatatct atttctagcg gcactaagtc ctgtgtttca atctctccaa gcccaagaaa
     7921 tgcggaagga tattcaaatg gcgctaaacg cagagaagat acatctgctt cttgaaaata
     7981 ttttaaacga acgacccatt ctcgctttat agcatctttt aatgtgataa aaaagctttc
     8041 gcgctctaaa taatccactt ctggccgact cgttaaaaaa gcagcattct tctctgttcg
     8101 cacttgctct ttctgaattg ccgtaaccat cattatcacc tcttaacttt attatacgaa
     8161 caaacgttct taaaatcaag taatttgcta aaaaattttt ttcataagag cctgaatagg
     8221 tttagcgctt acatattctt tttccgacaa aaacacttgc aaattaatga atagttgcta
     8281 tacttatgta agtaaataac attaacaaag gagttttatt attatgacta atacattttt
     8341 agattctatt aaagttcgtc gttccattta tgcactagat aaaaacgttt ccgttgagga
     8401 ttccaaaatt gaagaaatta ttaaagacgc tgttaaatat agcccatctt cattcaactc
     8461 ccaaagctct cgcgctgtca ttcttttagg agaaaaccat gataaacttt ggaatatcgt
     8521 agaagataca ttacgcgcta tcgtacctgc tgaaaacttt gcagctacag aagaaaaagt
     8581 tggttctttc cgcgctggat acggaacagt tcttttcttt gaagatactg ctgttattga
     8641 aggcttacaa gaaaacttcg ctctatatgc agacaacttc cctgtatggt ctgaacaatc
     8701 ttcaggtatt gcacaacatt cagtatgggt tgctcttgca aacgctggaa ttggtgcatc
     8761 tctacaacat tacaacccac taattgacga tgctgttaaa gctgaatgga atattcctgc
     8821 aagctggaac ttacgcgcgc aaatgccgtt tggtaacatc gttcaagaag ctggcgaaaa
     8881 agaattcatc gatgacgctg atcgtttccg cgttttcaaa taataaatgt ttcacgtgaa
     8941 acaaaaaatt ccgcgaccat taactggtat cgcggaattt ttattttgcc aaacttttaa
     9001 atctgcttct aagttcatca caacttacaa taccagcaat cccgccttta atttctccat
     9061 caacaagaac aagcgaattt ggtattcctt ttacatcaaa tttctgagct aatgcgcgtt
     9121 gtttatctac attaattttc acaacttgga cattaccttc ttccatctca gcgaattgct
     9181 caagtgttgg ccaaaagcag cgacacggtg cgcaccactc tgcccaaaaa ttaagtaata
     9241 ttttaggatg gctactaata atctcttcca agttctcttc ttttgcaaaa ataatcgcca
     9301 tacatatcca cctcacattc agaatattcc aaagttgtat tgtggtcaag caaagggttt
     9361 tagaatagca atatatcttg ctttttgttc attttttgac acttttgttt cacgtgaaac
     9421 attttatttg ctatgtaata tctctaaaat acgtaaatct agcaaaccag tatttttcac
     9481 tgtcatatcc gcatcacgaa gtccagaacc aacaccaacg cttacaattc cagctgcatt
     9541 aattgcttca attccagcct gggcatcttc aatcccaact acttctgatg tttctaaacc
     9601 taaaccgcga catgcttcca caaaaatttc cggatcaggt tttgatttag taattttagc
     9661 cgcatcaaca atgtaatcaa attcttgttc catttcaaga gcactcaata ccgtccgagc
     9721 atttttcgaa acagatgcaa ttgcgcattt gagattttgc tttttaagat ccactataag
     9781 ttctttaatt cctggtaaaa catccgctgg cgtaatttct tttagcaagc taacataaaa
     9841 gtcattttta tcagctgcaa gagcttcaat ctgctcttct gtaaagtcat tttcgcggcc
     9901 gtctttcttt aaaataagaa gtagggagtc aattctgctt acccctttta acttctcatt
     9961 aaatgcttca tcaaattcga ttccaatact ctcagctgtt tttttccagg ctaagtaatg
    10021 ataatgtgct gtatctgtga tgacgccatc taaatcgaaa actactcctt ttaatgctgt
    10081 tgtcattcta ctcgtccttt ccaaactgcc gcaacatttc gcgcggttct tcttaaatta
    10141 tttggtgttt ctttcagtat attttctaaa gttgctggtt tggcaatgga tggaaatact
    10201 gcgctgattc cgacttcata tactgcttct agtccctcac caacacttcc acaaattgca
    10261 aaaactggtg tttctttcgg cactactttc gcaacaccca caggagcttt cccttgtgcg
    10321 gtttgcccgt ccattttccc ttcgcctaca atgaccaaat ctgcatcctc acaaacagtt
    10381 ttgatttgaa gtgcttcaat aacaaaatca attcccgata aaaggttagc ttttgcaaac
    10441 gtcacaagtc cagcaccaat cccacccccg gcacctgctc gcggcattgt aaccatggcg
    10501 ggattcgcta actgataaaa ctggcgcatt gccccatcag ctgttgctaa atctgtaacg
    10561 gctagccctt tttgtggacc aaacacatac gatgcgccag cttctccaca aagcggattt
    10621 tcgacatccg tcacaatatt tactgtgatg ttttctagtt cagctgggac tttttcggaa
    10681 cgaatggttg ctatatcagc taaatttgcg ccaatcgggt tgacgatatt attttctgca
    10741 tctaggaatt cataaccaag cgcactagcc atgccaattc cgccatcgtt tgaagcgctt
    10801 ccaccaatcc caataataat ctcggtcgca cctttttcca tggcgtgcaa aattagctcg
    10861 cccactcctt tagtactcac ttgaagtgga tcgcgtctag tcgtcggaac caagtgcaaa
    10921 ccacaaactt cggccatttc tattaaagct tttttgttcc catccgtaaa agcaacttgt
    10981 gctgaaactg ggtcaccaaa agggccggac acatcgattt tcattttttt cgcacctaaa
    11041 gctttactta aaatctctag cgtaccttcc ccgccatcac tgacagggag taaatgataa
    11101 tcagcatccg gataaatttc ttgaaagccc tctttaatat actctgccac ctcatgcgcc
    11161 gtcaaacttt ctttgaatga atccggtgca atgacaattt tcataaagac acatccttct
    11221 gatccaactt aatagttaat gtatctgtta attgatgttt ttctccgtga ataactaatt
    11281 ctagcacgct ttttgtgctt tttgaaaggt gtaatctgtt ttgcgcaatt tctaccaaga
    11341 ttttttcacc tttccaagag aattcaaatg ccacagattg ccaggaatcc ggtatgtttg
    11401 gcgcgatttc aagtagttct ccactagtat ctatacccgc aaatccaaaa accaccgcca
    11461 accatattgc gccgagtgag gccgcatgaa gcccgtcatc cgatgaatgt ggctcactac
    11521 caaggtcaat taagcaagcc tcttgaaaaa attgataagc ttgtgcgcga tttccagttc
    11581 gattttctac aattgcatgg attgctttac ttaaagagga atcatgaatt gttcgatttt
    11641 catagtaatc caaattctgc ttcacagcat ctggtgcaaa catcctcgga aacaggtaaa
    11701 acaacatgac taaatctgct tgctttaaga tttgtagttc gttcacttct tgacgagaat
    11761 aatctagtag aatcccttgt gttccttgtg ccgccttata tttatccaaa tttatccaat
    11821 ctttttctaa gaaagtatca tcttgcggaa ttaagccaga ctcatttgcg acaggtaaat
    11881 agattttttc aagaaaagct tctgcacggg ctacaaaatc tgcattatct ttattccatt
    11941 ctaaagcttt tttcacatta tagtgtgcca tataattcgt atacgtatta ttatcgatat
    12001 gctcggtgta ttcgtctgga ccaatcacat caaggatttc cagtcgtcca ttacgattag
    12061 ttgcacggct tagccaaaat tccgctgttt caaggagcag ctctgaacca cactctttca
    12121 taaactgagc atccttagtc gccgtttcat attcacaaac cgcataagca atatccgcaa
    12181 ctaaatgatg ctccgaaatc gccgacgcta ctttttgacg tgtgccagtt cgaatattaa
    12241 tcgctgcaaa ttcaggcgtt tcttcttcgc cagagaatgc actttcccac ggaaaaagcg
    12301 ccccattata gccgtttttc gttgcctttt ctttcgcttc tttcaaatga aggtagcgat
    12361 attttaataa ttgtttggca atttccggct tattataaag gaaaaatggc ataataaaaa
    12421 tttctgtatc ccaaaaaaca tgccccttgt aaccttctcc ggtaagtccc ttcgcaccaa
    12481 cactacaacg aaaatcatct ttcggcgtca taatttctaa gtgatagcac gcaaaatcta
    12541 gtgcaaattg gtcaaaatca ttcgtgctct caacacggac acccgcatgc tcccaaaaat
    12601 ctgcccataa agtttccgaa gctcttttca attctgcata agtcgtattt ggaagttccg
    12661 catccacttg atccagggat gttttaacca tgcttatttt ctccaaagta aatagttgat
    12721 tttcagcgat ttcttgctct acttcggtca ttaattgtct gtttttcgca gtgaaaatcc
    12781 cttttttatt cacttttgtt gctattgtaa tatgctgttt gctctcgatg gtctcatatt
    12841 cgccaaccat caacttctca tcaaaaattc gtagactcaa ctccgccagc tgctgtgttc
    12901 caaaattagt ttgttgcgca tcaataccag tttttacttt gactttcgcc gcaccgctca
    12961 aaggcattat ctccacttta gcagcaatga cgtgctttgc tgcttttgaa acaaatcggt
    13021 gaaaattcag ttgatacttc ttgcccgcgc tactttccca agtaattttt cgaattaatt
    13081 ctcctgtatt catatctaaa taacgctcgt aagcatggac tttccccgct tgcatcgaaa
    13141 aattttcccc atcaagcatc acttggaaac gcgtcacatc cggcaaatta acaagttccg
    13201 aactcagcga accgctcgga cgattataaa tccccgccac atacataccg cgaacttgct
    13261 ccggatattc ttcttcaaga gcaccgcgca cgcccaaata gccatttccc acagtcattt
    13321 ggctaccata tttatttaga taatttaatg caaattcctt ctcgattatt ttcttcataa
    13381 agaaacactc tcaccttttt ctgccgattc gtataaactt tcaacaattc tttgtatgat
    13441 ataaccttgt tcagcgccag caagttccac ttttccagca ccaagaacgc tatcaacaaa
    13501 tgctttcatg ctgttttcgt gtttattttc ttccagttgt cctaacttct ctaacaactg
    13561 aaattcacct gcattatctg tataaatttc agccgggtat aaacttcctc ctgctaaatc
    13621 accgaaaaaa tcaacattta gcgcactttc tggcttgata tgtagcgcaa aagaagtatc
    13681 taattcaatt aatcctccat tttccagttc aataaagccg aataaagaat cctctaccgt
    13741 atatttttcc ggatcccatg aaccaaatgt ccccgcactt ttcttggttc cgattttttg
    13801 aaaacttttt gccgttactt tcttcacttt tggaaaacca aggacaaaca tcgccgcgtc
    13861 gagcatgtga attcccatat caatcagcgg acccccgcct tgcatttctt tattcgtaaa
    13921 agttccccaa cccggcacgc cagaacgacg aagcgcagtt gctttcacac aataaatttc
    13981 acctagaagc gccgaatttc tctttaaaaa ctgtgcttca ctggaaaaac gatgatgaaa
    14041 atcatacgcc aaaatcgcgc ctttttcttc cgcaagttcc cacattgctt tcgcttccgc
    14101 cgcactcatt gcgggtggct tttcacacat aacggccgct ccattcgcta gtgacaacat
    14161 cacattatca aaatggaacc gattaggcgt gcaaatacta ataatatcga ttttctcgac
    14221 cgcaaacatc tcttctgccg tagcataatg cttctcaaaa ccattgttcg cacgaaactc
    14281 ttcgccacgc tccaaacttg ggtcgcaaac agctacaagc tccagttcat ttcttgtctt
    14341 ataatacgca gcgtggacct tctcagcgac ttgtccagca ccgataattg caactctttt
    14401 cttcatatcc gaaactcctt ttagaaaaat ccgtccgctt taattgggac ggattttcta
    14461 ttttaaatta aacagctttt taaatgtgcc aacgcatctt tataagcttg ttctggattt
    14521 tcactgcgaa cacgacattc aaaagttaaa aatccgttgt aaccgttctt tttcagttga
    14581 tcaaaacttg ttttaaaatc aaggctaccg cttcctggtt ggtagcgatg attgtcagca
    14641 acatgaatgt gaccgatcga atctttatac gtctcaagca cagtcggaat gctatcttct
    14701 tcaatattca tatgatagaa atcagcgata atttctacat ttttaagttc attttcatca
    14761 atatattttt gcgcatcact tagcaaatta atcatatgat cttggtatct gttaagcggc
    14821 tcaagataaa ccttcgtccc agtttcacca gcaattttgt ccaaataaac caacgactcg
    14881 ctcactgctt tgaaatctcc ggcttggcta cgcggcgaaa ccattggcgg aagacgatac
    14941 gtgaacatcc cccacgccgc tggaacgaca atcccttgcc caccgacttc tgctaaagct
    15001 tctaaaatcg ctttaatttc ttctaaacca ttcagtctgc gctcttcaat gaagtcacca
    15061 atccagccgt catagccacc acatgcagta ctaacaggta gccccgtttt ttcgatagct
    15121 ttcttcactt cgtccaaatt ttcaacaagt aatttaccat caatttcaaa accttcaaag
    15181 cccatttctt ttacataagc aaatttttct tctatatttt ctgggaaaaa tgcttggttt
    15241 tgtgtgccta atttcattat tatcgctcct taaagggtaa tccccatttt aatacttaaa
    15301 tcaggttgtt gatcgacgta tttcatgtag ctctcagctg aatctgcaaa cggaacgact
    15361 ggatcaataa tgtccgaaca atccaagtaa ccgttcatca gtagttccca acaagtctcc
    15421 tcgatacgct tacgatccca gcgcggataa tccggatttg gttcactagc cgcacgtgaa
    15481 aagacaattt tcgcattgtt gaaatgagct tcccgaccaa gattaaatcc ttctgggaaa
    15541 ggtttcgcga aggctacata agaaattgtt ccgccgtaag ctattccgcg tagtgccgct
    15601 tgaagtgcag ccgcattccc gctcgtttca ataatcgaat ccgcaccaag tttaccagta
    15661 agacgcttca cttctaagcc aacatctgtc gtaattggat caaaagtagc atctgctcca
    15721 tgtttttcag caatttcacg acgatgacta agtggatcca ccccgataac aacacttgct
    15781 ccagcttttt tcgccagttg aatcgcaatt tgaccaatcg caccaagtcc gacaacaaca
    15841 acataatcgc ccgcacgaac atgtgcatca cgcacgccac tcatcgcaaa ttgagccggg
    15901 tcatagcaaa ccgcgttttt ccaattagca ccttttggca atttacgtag tttataatta
    15961 tcgacagctt ttacaataac agtttccata atcggtccgt aagaacaaac aatatctcca
    16021 agctcgtatt ctgttacttt gctcccacat tcaactactt caccaacgac catgttacct
    16081 agctgaaact cgccaaatac aatgcctcgc gcactatttg tttcacgtga aacaaataaa
    16141 ttccattctg gtgaaaattc ttcatcaata aaaggactaa ttcctctaaa atcaactact
    16201 tctgtaccat gttttggaga agcgaattga actttaattt tcacttcatc ttctaaaact
    16261 tcacgatcat tatattctac taattccgcc acacgaggcg ctgtcgctac taattttttc
    16321 attttcaata acttcctttc ttatccctta actccaccgt ctgttaagtt tcctttgata
    16381 aatcgttctg aaattgcgta cataataacg actggaagcg ccgtaacaag cgatgcagcc
    16441 atcattctac cccaaatata atcaggtgta ctaaataatg tattcaagcc aatcggtaac
    16501 gtgaatttct ctgcgctaga taagaaaatc gaagcaaaca gataatcatt ccaagctacc
    16561 atgaagcagt atacgaacac agaaacaata cccgaaatcg caagcggaac aataattcgt
    16621 aagataatct ggaagcgatt cagcccgtcc atcattgctg cttcttcaat atcagttgga
    16681 atcgtatcaa aataactttt cagcataaat actgcagttg gtagtgtttg tacaaccatc
    16741 gtgataatta aagctgtttc cgtatcatat aaccccaaac tcgaaattat tttaaacaac
    16801 ggaacaatta acaagattcc ggagaacata taaaccgtgt aaaaactcgc attaatcgtc
    16861 atacgccctt taaagcgtaa tttcgacaac gcataagcgc ctaaaatccc caaaacgact
    16921 gcaatcccgg ccgcaaaaac cgaaacaacc aaactatttt taaagtacgt taaaaacgga
    16981 aaaatatctg ggttgaaaat atcgatgtaa tgctggaaag tgaattcttt cgggaaaaat
    17041 gttggatgtg ttgaaatggc ttctttactg ctcttaaatg aagtcattaa cataatcgca
    17101 aatgggaaca acgtgataca taaaaatgca accatcgtca cataaaacgc gattttcttt
    17161 gttctttttg actttttact acttaccgcc attcaaatcc acccgctttc ttgcaaaaat
    17221 aatcacaaca aaaataatga caaataatat gacagaaatc gctgctgctt tccctaaatc
    17281 attgaatgcg aatgctgttt tatataaata aactccaagg atgtttactt tattcgtgag
    17341 taagtataca tcggtgaaca tatagaacat ccaaatcgca cgaagcgtaa taactgtcgc
    17401 aagtaccggc ataatcgctg gcaaagtaac aattttgaat ttatcccaaa tgttcgctcc
    17461 gtccatatca gccgcctcat aaagcgactt atcgaccgtt tgcaaaatcg ctaaaaacga
    17521 aataaatgca tacgggaagt aacgccatat tgcaaaaaag gttactaaaa agaaactaga
    17581 aactggatta tcaaaccaaa gtggcgcttc tttgaacaga tggagtacat ccacagtcat
    17641 aaaattaatt acgccataac cattattaaa catatatttc catgcaaaaa taagagaaat
    17701 agatggtgtt acatatgaca aaataataag cgaccgagcc gttcttctaa aacgaaattc
    17761 gcggttaaag aaaatcgcca caagtagtcc catcccagta cttccaacca ctacaagtac
    17821 tgtataagcc acagtaagac ctagtgattt ataaaactct ggatccttca aaatatctat
    17881 atagttttgt aaaccgataa agactgattt aatattcgga tttagcggca tatctaaaaa
    17941 actaatctgg atatttgaaa tcatcggata taaaacaagt gctgccagta aaacaaaact
    18001 tggcgcaagt aaaatcattg ctaacttaaa gtcggacctt ttatatactt tcgttttcat
    18061 aatgcctcct taaatcaaaa agcgacgtac taaactgtta aaaaagacgg ggagactcaa
    18121 ctccccgcta tttgattatt taccttcttc agcttttttc tgtgcagctt ttaagtccgc
    18181 tgatacatcg ccaccgccaa cagttacgtt attaaccatc tgtgcgataa tgcctgagct
    18241 agtaatatct cccatttttg taaggttttt accgtcaaca agtccgaaaa cttggatgtc
    18301 attgaatgat gctgcgattt catttggaag ttcaccaaac gatttaatta cttcattttc
    18361 tttgtatgct ttttgttcta ctacttcttt atttactggt tgcgctccac ctggagacat
    18421 taatacccaa gttgccatat tttctggttg agacaagtat tcaacaaatt tcttcgttgc
    18481 tttcttttgc tcatcatcaa gtcctgctga aatagttaaa ccagaaactg taccataaac
    18541 tgctttttct ttttcttctg gaattgcgaa accgatattt tttggatcgc cttcttcata
    18601 aacggatgga aggatatacg tagagtacat tgccattgga actgttccat tcataaatgc
    18661 atctttaatt tcagttacat catttgaacc aggcatcgtg tatgctgaca aatctttata
    18721 atattgaagt gcttctttca tttctggtgt atcaatcgtt acattacctt ttgcatctaa
    18781 aacattggct ttattagaaa gtgcgaattg ggagaaagct tgctcactca tcgtgctttc
    18841 tgctgttgga attgcaatac cgtatttttt atctgcttta tttgtgaatt ttttcgctac
    18901 tttttcaata tccgcccagt ttttaggttc ttcaaaacca gcatcggcta aagctttttt
    18961 gttgtaccaa ataccttgaa cccaaccgct taatggtgct gcgatatagc ttttaccatc
    19021 ttcagaacgt actaagtttg ttgcaccttc gtagtatttg tcttctccaa ccgagtcgat
    19081 aacttctttc actgcatctt gatcaatcaa ctcatcttta tccattactt tggcaaaatc
    19141 ttggcttact tccataactg ctggaagttt accagagcga gcaagtgtga caacttttgt
    19201 attaaacgca tcttcttcaa ctggaatttg tttgattttg attgttggat tttctttttc
    19261 aaaatcagca attaatttat taataacatc taaacgctct ttttcaacgg atgaatgcat
    19321 aaattcaatc gttacttcct tactactaga ctctttccct ccacatgcag ctagaaccgc
    19381 acttagaacc aacacaacaa caagtaatac aagactcttt ttcttcattt ttgttcctcc
    19441 ctgtaatttt tggtttttag ccagcagaat tcatagccac taagctttat ggaatcgctc
    19501 ccagttactg tggagcccgt ataaagattt gtataaacac cgctgtctag tgaataactc
    19561 acttcttttt ctgataaatt atgaatcaat ataatcgatt ccacgtcgga tgaacgttta
    19621 acaacaaaca attccgccgt agattctaaa acttccatcg gtatttctgg atggaaaagt
    19681 gattccgctt ttcgtgtgct aattaatttc gttaacgcat cataagttgc ttttcgtaag
    19741 gagcctcttt gttccaactc tgctgtaatt tccgccaagt cgtatttttt tcgattaata
    19801 gagcgattgt ggcctgttgt ttctacgcct gaataatcat tgcggcttcc taaaatactt
    19861 tgaacataaa cggctggaac gcctgggata gacattagta ctgcatgagc cacaagaaat
    19921 ctcgacatcc tcaagtcatc tgtgtccgcc tgtttactta gcgcatccat gtacgtcacg
    19981 ttaatttcat acggactctt agaaccatct ggattttgct tatatgaaac gagcgcgcct
    20041 tcttcctcca aatcattcac taaagccaaa atttcagctt ctggaataat gccgcgcact
    20101 ggatttaacc caatcccatc atgtgaggca aggaaattaa agaatgttcg cttgccttct
    20161 ggtagctcta aattcttcgc ccagttacgg aggaattctg cattaccatg atgtatcgca
    20221 tggagcacaa gtggtggaag cgggaattga taaaccatat gcgcttcttt ttcaccattt
    20281 ccaaaataac taatattatc aacatgcggc acattggttt cggttataat aatcgtcccc
    20341 ggagctgcaa tgtctactaa atctctaaat aatttcacga tttcatgcgt ctcttctaaa
    20401 tgaatcgagc tcgttcccgg cactttccac ataaagccaa ccgcatcaag tcgcacatat
    20461 tccgcacctt cttctaaata gaacatcaaa acatcaatca tcttgtaaag cacttccgga
    20521 gaagcaaagt ttaaatcgat ttgatcctca ctaaaagtcg tccaaatatg ccctactttt
    20581 cctgaatcaa attgaaatgg tgtcagcact ggtgtcgcac gtggccttgt taccgaacta
    20641 aggtccatct ttggatccat ttccacaaaa aagttcctaa actcctcgtc acccgccaaa
    20701 tatcgcttaa accaatcact tttcgccgac atatgattac aaacaaaatc aaacatcaag
    20761 cgcgccgact gttccatctc cttaatatct tcccaatcac ccagctccgg gttcaccgct
    20821 ttataatcga tgaccgaaaa cccatcatcc gaagaataag gataaaaagg caagaaatga
    20881 actacctcaa aagtcgattt taaataacta tcatacattt tcttaaaagt ttttaacgtt
    20941 tttttggatt cctctttaaa ttggtctcca tatgtaatta aaacaatatc tttctcgtcc
    21001 cactgatctt ttcgtgttaa ctttcgttgt tgcgtttgct gtacccgcgc ttcgattcta
    21061 gctgccaaac tatctaccac atcttcggca tataaccgcg aaagtcgttt tcttaaattc
    21121 gtcatcattt acctcctaac cgggagcgct cccacaagaa gaattatagt atggaaagcg
    21181 ctttctgtca aacacaattt ttaatgtttt ttctaacacg ttgataatag tgagttttct
    21241 ctcatatata acatctagtt ggacatttac tagaaaattg agtaatataa acatggatga
    21301 taatgaccgg aaccgatacc ggaaacaata aagagaaagg aagattacct tggcatcaac
    21361 catatatgat atagcaaaac atgcgggagt ttcaaaatca acggtatcta gagtactaaa
    21421 caatcaagct aacatttccg aagaatcacg aaaaaaagta ctagaagcga ttgacgaact
    21481 aaactaccag ccaagcaaac tagcgcgcgc acttacctct tcgggctttg atgctatcat
    21541 ggttatttca aatcgctcta ctacaaccac aaccggaaac ccattttttt ccgaaataat
    21601 tcaatcgatt tccactcaag ctgagttgga aaatttcgac ctaattcttc aaactgctaa
    21661 aaacagcgaa gacgaactta aaaaatgcct ctccaaaatt caagaaaaaa tgataaaagg
    21721 cattattatg ctaagttctc ccgctgatga agattttttt caccaattag acccgtataa
    21781 tatccccatc gtcgtgaccg gaaaagtaga aggtcattac aaaaatatat actctgttga
    21841 caccgacaat tttggcgaca gttatgctct aacaaaacat ttaatcaagc aaggtcatca
    21901 aaaaatcgct tgtatccatg ctccactcga ttatcacgtg tcgatagatc gtcttgctgg
    21961 tttccgcagc tgcctgtttg accaccaatt agatttacgt aacgactgga ttattgatag
    22021 cggttatagt atagaagata gctacaaagc agcactacgc ctaatggaag gcccagataa
    22081 accaaccgca gttttcgcaa ccgacgattt aaaggtcctt agcatttaca aaatggccgc
    22141 cgataaaaac ttacaaatcc ctgcagattt ttccgtcatc ggctataatg ataaagtagc
    22201 gtcctctttc ttgtcgccgc cgctaacgtc tattgatatt ccaatcaaca aactagggaa
    22261 aaaagcgact aacttattat tccgcttaat ccatcaagat aaaaatgtac caaaaacaac
    22321 gattattaaa accgaaatga ttgaacgtga atccattcag aaaataaacg tctaaactta
    22381 ttttctgagt ttactggtcc tgtagctcag ttgggagagt atcaccttga catggtgggg
    22441 gtcgctggtt cgagaccagt cgggaccatt tataaaaaaa gcaccctttt ataaaggatg
    22501 ctttttttat tttatttaaa taacttacct aatttcttaa acaatccatc ctcaatgata
    22561 tcaataccga taccccagtt actcttgaga atttctttat tagcttccac atattcttcc
    22621 aaatccttct ctttaatagt gagattgtga tatggacgat attctaaata acaagaagct
    22681 ccgtttttgt gaattttctt cgtcatacga tggttcaaat acttagattt gatgtcacat
    22741 tcttgacgtg tgtagcgttc ttgctgatca attgatttat ctgtcgtcaa atgaagttct
    22801 gttttgatga cattccgatc aatccaatat ggaaaatcct tatgaaaatg tttttccgca
    22861 ccatcatcaa taaaattatt ccaattccaa aaatgtaaat aacgcttttt attttctaca
    22921 atatatggat cggaaatagt tgctttataa attatagaaa gctcatttaa gtctttatta
    22981 tcttccacaa tttgaatgga tgtattacta aaatgactat caacttcatt
//
LOCUS       DASDXX010000023        22960 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.023, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000023 DASDXX010000000
VERSION     DASDXX010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22960
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.023"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..345)
                     /locus_tag="U0280_000725"
     CDS             complement(<1..345)
                     /locus_tag="U0280_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEM2270681.1"
                     /translation="MFHTIDFSDIFSSDYSNKISFKKGEIIHSYRDYEEKTPQIGAIL
                     EGTAVLEGPTNEGRWMINALIGQHSLFGMESLLETKTAPELTEYRVRALENGTVLFID
                     REFLLNYLYANPQ"
     gene            complement(564..1016)
                     /locus_tag="U0280_000726"
     CDS             complement(564..1016)
                     /locus_tag="U0280_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM2270682.1"
                     /translation="MYEKLVNKYQDEVTIREEKMPYKLPGLYLNGTIFISKDQSSIEK
                     GCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREY
                     FEVAEFLEVTEEFLRHTVTHYAEKYGPMYDYGGYFINFGNSIDVYKKF"
     gene            complement(1022..1357)
                     /locus_tag="U0280_000727"
     CDS             complement(1022..1357)
                     /locus_tag="U0280_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2270683.1"
                     /translation="MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDR
                     KANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIE
                     MKKKLHRGM"
     gene            1574..2002
                     /locus_tag="U0280_000728"
     CDS             1574..2002
                     /locus_tag="U0280_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270684.1"
                     /translation="MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREK
                     GLLTAEQKLLILTPSEYREYKRTKSDVQISRLIGVSRSSLAEWKRKKGLNRKKPQPVQ
                     QEMIDVLAFHLDKTKDEIGALPASAIECQYEAFVINEAHN"
     gene            2014..2430
                     /locus_tag="U0280_000729"
     CDS             2014..2430
                     /locus_tag="U0280_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270685.1"
                     /translation="MQVLVLPENKDINYIKTVQEVKRFFADFERFRMITGLSKKPQLL
                     RNGFLEEPQFAPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQ
                     DVAVMMDLPYEIAQFKRIKKRAVLEIATLMGILVRK"
     gene            2710..3099
                     /locus_tag="U0280_000730"
     CDS             2710..3099
                     /locus_tag="U0280_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5072 family protein"
                     /protein_id="HEM2270686.1"
                     /translation="MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRDQVEMPTTMIEMID
                     QEEEESQTAWKEKYRFAIHHYTNETDLAGVEMIDTLIQTGFTLPEGYKLIAVRHYGKQ
                     NLVKENTLIHAKTSFEVSICRELKVKI"
     gene            3112..3624
                     /locus_tag="U0280_000731"
     CDS             3112..3624
                     /locus_tag="U0280_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail protein, TP901-1 family"
                     /protein_id="HEM2270687.1"
                     /translation="MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQG
                     LTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSP
                     VCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQM
                     PGETPVAPAE"
     gene            3672..3974
                     /locus_tag="U0280_000732"
     CDS             3672..3974
                     /locus_tag="U0280_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation and condensation protein B"
                     /protein_id="HEM2270688.1"
                     /translation="MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQV
                     IETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR"
     gene            4016..4420
                     /locus_tag="U0280_000733"
     CDS             4016..4420
                     /locus_tag="U0280_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine racemase"
                     /protein_id="HEM2270689.1"
                     /translation="MDSEMNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEW
                     ENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEA
                     KEGKAWIDRIYGANGLRRPKNKEERGKVNGGF"
     gene            4407..6275
                     /locus_tag="U0280_000734"
     CDS             4407..6275
                     /locus_tag="U0280_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270690.1"
                     /translation="MADSKSFTFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDV
                     GNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNL
                     GSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKKHLGGLMSSIGGV
                     GGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLM
                     PIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVM
                     SLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIG
                     VIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIGFITNIFTTIVT
                     IIGAAFQMVFTVASKIWNAIMTTISGIIEGIKAVITGISTTVSSVFNGVKRIITGVFD
                     GIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIG
                     KIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSILY
                     TSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS"
     gene            6272..7090
                     /locus_tag="U0280_000735"
     CDS             6272..7090
                     /locus_tag="U0280_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HEM2270691.1"
                     /translation="MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGT
                     DGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRY
                     EVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDD
                     LFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKALQKT
                     DVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR"
     gene            7100..8236
                     /locus_tag="U0280_000736"
     CDS             7100..8236
                     /locus_tag="U0280_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2270692.1"
                     /translation="MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKT
                     KQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNV
                     KSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGA
                     ILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENAD
                     KLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALT
                     ISYKGKEPVLERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRI
                     QTQIANQVKKTSVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD"
     gene            8226..8525
                     /locus_tag="U0280_000737"
     CDS             8226..8525
                     /locus_tag="U0280_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA-adding enzyme"
                     /protein_id="HEM2270693.1"
                     /translation="MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDK
                     TKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE"
     gene            8540..9115
                     /locus_tag="U0280_000738"
     CDS             8540..9115
                     /locus_tag="U0280_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HEM2270694.1"
                     /translation="MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYV
                     YVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARVDAFGARFPVLRERLNQ
                     EQVIYNKKSTVQFDVNTIINMEKQDIGLLTSKTISEAQTVCFLNISSLNEDADIVLEK
                     TGETSFSENLTSLVFAKIGTNERYQMEPVGA"
     gene            9130..9609
                     /locus_tag="U0280_000739"
     CDS             9130..9609
                     /locus_tag="U0280_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270695.1"
                     /translation="MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVV
                     SVNGKAGRVLLDAEDVHAAKKSHNHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSIN
                     GKTGIVDLFAADLDAAEINHTHAEATTTESGFLAKEDKEKLDAMQIIALETIKEVIE"
     gene            9606..10142
                     /locus_tag="U0280_000740"
     CDS             9606..10142
                     /locus_tag="U0280_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270696.1"
                     /translation="MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKATWNE
                     KETTAGAEQKANTALNSAKDYVDTIGKGTVIFKGANIMAAGQKYTWNSSKLKFGITLL
                     FSRYDSANNTPLDYYYHSVFLSKAQLAELAGKGLLVPMPSATYGERKYLYVSETEVAG
                     HNDNTNNASWALRQLTVM"
     gene            10161..10583
                     /locus_tag="U0280_000741"
     CDS             10161..10583
                     /locus_tag="U0280_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin family protein"
                     /protein_id="HEM2270697.1"
                     /translation="MEVILKIGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLA
                     SGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISI
                     LENFVRMGMKVPEVLKNLILIFDSKSGDEEEKHDKDMD"
     gene            10564..11292
                     /locus_tag="U0280_000742"
     CDS             10564..11292
                     /locus_tag="U0280_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2270698.1"
                     /translation="MTKIWIDAGHGGKDSGASGNGLVEKNWVLTVAKQLQTELVKAGF
                     EVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQ
                     KIIHKNIIAKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQ
                     TDYCLGIVAAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKT
                     LNLTTTKGVPGSWVLKTEVNTGKR"
     gene            complement(11330..13684)
                     /locus_tag="U0280_000743"
     CDS             complement(11330..13684)
                     /locus_tag="U0280_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM2270699.1"
                     /translation="MKVNKFFKKTTHVLLVAGLTIGLTAPFTGTTAQAAADTVPIQIL
                     GINDFHGALETASKDASGSPIGGADYLATNLDNATNSFLQANPGATTDNAIRVQAGDM
                     VGASPAVSGLLQDEPTMKVLQKMNFEVGTLGNHEFDEGLPEYKRILDGVSTNKFGPIV
                     EAYPRVKSDMKIVAANVVNKGTNTVAEGFLPYYVKEIDGVKVGFIGIVTTEIPNLVLA
                     NHIKDYDFLDEAETIVKYSAELRGQGVNAIVVLSHVPALSTGNPNTGTKQDVAGEAAN
                     MITKANELDPNNSVDLVLAGHNHQYTNGLVGKTRIVQSYNNGKAFSDVTGELDKTTGD
                     FVTPPDAKITYNTRSVTPNADITAVTEDAKSRIEGVINETIGLANKDVISRDTNPDNK
                     AIDDKESELGNMITDAQRYMANKAGADVDFAMTNNGGIRSDLTTRLANGQNEITWGAA
                     QAVQPFGNILQVVEMTGADILEALNQQYLSNQTYFLQISGLKYTFTDTDDLDHAYKVA
                     SVTTEDGTPLKADQKYKVVINDFLFGGGDGFSAFKKANLVTAIDPDTETFINYIKDQK
                     AAGKVITAQKEGRKVYKSQAEIDKETEDAAIKAIKDATKINKLAEKDKTLTGTTLPGA
                     TVSVQKATANARMALAAGPNATADANGKFSVDVTSLNLKKGDQITTTITDPNGYSTTF
                     QATVQAAATTPPDNGNGGTDNGNGNGNNGGTDGNGGTNNGNGSGTNGGTTTTEDPTTT
                     TPNTSTTGTSANTSLPTTGDTAGFATVFGIVLTTTALYVLRKRS"
     gene            13872..14621
                     /locus_tag="U0280_000744"
     CDS             13872..14621
                     /locus_tag="U0280_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEM2270700.1"
                     /translation="MDISSTEIWDAIRRNSYLLYYQPKVDAKTNKIIGFEGLIRLKTA
                     TTILAPIDFFDDIVLLNATREMQDFVAETAIKQINQLGGRFSISINIPAHYVASSTYM
                     TFLHDYVKEHLKYPECLEIEIIERGEITELAIADKNLRKIKDLGVKVSMDDFGKGYSS
                     LAYLRSLPIDIVKTDMSFIALLKTDRKQQIIIRAIVNLCHDLGGKVVTEGVEDMEQVE
                     KLREMKVDYFQGYYFSRPLPMEDIKEKYSFV"
     gene            complement(14691..16199)
                     /locus_tag="U0280_000745"
     CDS             complement(14691..16199)
                     /locus_tag="U0280_000745"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM2270701.1"
                     /translation="MAFYFEEPSRTFSEFLLVPGYSSAECVPTNVSLKTPIVKFKKGE
                     ESAITMNIPLVSAIMQAVSDDNMGIALATEGGVSFIFGSQSIESEAAMVSRVKNHKAG
                     FVISDSNISPDKTLQDILNLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRVTRMSPD
                     EKVADFMTPFEKLVTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSN
                     KENKLELLDSSKRYVVGAGINTRDYEERVPALVEAGADILCIDSSEGYSEWQKRTLDY
                     VRGKYGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGGSICITREQKGIGRGQATA
                     LIDVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFSRFDESPT
                     NKVNLNGTYMKEYWGEGANRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAIS
                     LSKVRSTMCNCGALNIPELQQKAKITLVSSTSIVEGGAHDVVVKDASNNLIK"
     gene            16366..16599
                     /locus_tag="U0280_000746"
     CDS             16366..16599
                     /locus_tag="U0280_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HEM2270702.1"
                     /translation="MDEETLLERGYRKYRGAEVDIYFNTNICEHSGNCVKGNAELFNL
                     DRKPWIMPDNVSKEEAKRVIHTCPSGALQYIEK"
     gene            16611..16889
                     /locus_tag="U0280_000747"
     CDS             16611..16889
                     /locus_tag="U0280_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM2270703.1"
                     /translation="MEYKNGENRIYAVNDEGVEVGEVTFVPTGEDMFIIDHTGVDDAA
                     RGQGIAQELVKRAVEKAKTEGKKIVPLCPFAKAEFAKKPEYQEVQAAK"
     regulatory      17026..17128
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            17215..18789
                     /locus_tag="U0280_000748"
     CDS             17215..18789
                     /locus_tag="U0280_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2270704.1"
                     /translation="MKKFLLVAVISVFALVLTACGGSGASSDKANGSGKAKDGGSLII
                     GVTGDPEVINPNYASDRVTLTIQQAVYAPLFWEVDGKPALAKSLDISDDNLTYTVKLK
                     DGLTWHDGKPLTADDVVFTVNSILDTKQNSPNRGNFVFDDKPVKVEAVDDTTVKFTLP
                     TVAPAFENTIKTFFPIPKHIFEGVENIEKSDKNKNPIGSGPYKFVEYKTGEYVSLERF
                     NDYFDGKPKLDKVTFRITKDQNAANLALQNGEINLKSIQPSDRNKVEKASAVNIITYP
                     ENRLSYATFNENQPALKSKELRQALSYALDREEIIDAAYGSDEYAKPASSFLTENTKY
                     FTDKVETYDQDIAKAKKLVKESGFDTSQKLTVYYLNNSKSQESIALYLQQQYKEIGVT
                     LDLKPTDPNALSNITLDRKNADYSIALNGYIMGNDPDAYKSLYLSDAPYNYSNYHNKD
                     LDALWEKGAVTADDKERQEIYEKIQNTIADDAVIYPISYDNAVLALDSRYGGQKAATP
                     QPVTMFRDLSKLYLTE"
     gene            18891..19841
                     /locus_tag="U0280_000749"
     CDS             18891..19841
                     /locus_tag="U0280_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270705.1"
                     /translation="MLKTIIKRVLQIIPMLFIISIISFALIKLAPGDPVNSFVTPDMN
                     PDDVERIRQSLGLDQPIYVQYFIWLGNLLQGNLGYSIVNSQPVLQQILERIPATLGLV
                     GTSLVLTLLLSIPLGLVAANYENTWIDKVLNGISYIGISIPIFWFGMILIDVFSIQLG
                     WLPSLGMRTIGVDSFWDMAEHAILPVITLTFQGCAAYYRYVRSNTINQLKEEYVLFGY
                     AKGLSKVQIMGHHVLKNSLLPVITLLGMSLPQVITGAFITESIFSWPGMGSLGINAIF
                     QLDYPVIMAITLFSALLLIIGNLLADLAYMIVDPRIREMG"
     gene            19852..20745
                     /locus_tag="U0280_000750"
     CDS             19852..20745
                     /locus_tag="U0280_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270706.1"
                     /translation="MRLDFSKKTMQDFERDAEVVHATRERSFWRFMLADRRAVFATSV
                     LILITVACIFAFLSPYDPNALSVQDKLMPPNSSHWFGTDDHGRDYLTRVLYGGRVSLL
                     VGVFAMMIAVVVGTLAGTVSGYFGGFIDNMVMRFLDIFMSIPSFFLLMILNAYLKPGI
                     SNIIIIIGLLSWMEVARIVRAETLTLKEREFILYSKSSGGGFFHIMFKHIIPNAMPSI
                     VVAASLNVATAILTESALSFLGLGVQQPNASWGSMLNNAQGYVGEATYLALFPGLLIL
                     MTILSFNVLGDVLRKGLSRRY"
     gene            20945..21229
                     /locus_tag="U0280_000751"
     CDS             20945..21229
                     /locus_tag="U0280_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 domain-containing protein"
                     /protein_id="HEM2270707.1"
                     /translation="MSEIKVKEATLKKHATKLESKGKSTEYLPMKGGNMAYSQANSIN
                     HFRTALFDLVDAVDNFQGVVGTDAKRLKELGVSFTRKDQELERGMGLGGK"
     gene            21230..21598
                     /locus_tag="U0280_000752"
     CDS             21230..21598
                     /locus_tag="U0280_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair Rad50 ATPase"
                     /protein_id="HEM2270708.1"
                     /translation="MDAKSQQMETQLQLLKKEQSAAEDFLQDLQRQQNEQEWLAEDFA
                     RVHQEERESLELLREVWQGAESRSFGYYLADLQEEEKQKWHKKIQANQEEHQQKITAC
                     QNNIYQLENQQQDLQKELLQ"
     gene            21595..22902
                     /locus_tag="U0280_000753"
                     /pseudo
     CDS             21595..22902
                     /locus_tag="U0280_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246390.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
BASE COUNT         7313 a         3816 c         5042 g         6789 t
ORIGIN      
        1 ttgtgggttt gcatataaat aattgagaag aaactcgcgg tcaataaata gaacggtacc
       61 attttctaat gcgcgaacac gatattcagt aagttcaggt gctgttttag tttcgagtaa
      121 actttccatt ccaaaaagcg agtgttgacc aatcaacgca tttatcatcc agcgaccttc
      181 atttgtagga ccttctaaaa cagccgttcc ctctaaaata gcacctattt gcggcgtctt
      241 ttcttcgtaa tctctatatg aatgaataat ttcgcctttt ttaaaagaaa tcttatttga
      301 ataatcacta gaaaaaatat ctgaaaaatc tatcgtgtga aacattatca aaactcctat
      361 actaaggtaa aattggtatt taccatatta ctttactgct atttgtgtta aaaagatacc
      421 gaataaaaat cgtgttcaca atttagacat gaaaaagtca ctctttagca acaaatttag
      481 tggttttatc aataaaaact tactttttct tccctggaga gaaattcaac caaaaaaaga
      541 ccctccatag ataggagagt ctttcaaaac ttcttgtaaa catcaatgga attgccaaaa
      601 ttaatgaaat atccaccata atcatacatc ggaccatatt tttctgcgta atgagtaact
      661 gtatggcgca aaaattcttc tgttacctct aaaaactccg ctacttcaaa atattctcgt
      721 aagcctagat aaaaacaagc aatgatgtca tcaagcggta ttagttcctc ataaccttta
      781 cgacgagcaa aaatttcttg ttttttatcc ataattgttt cctgtttagt gatgttacct
      841 acagtgtatt tgtaatgcat caattcttct actaaaacac agcctttttc aatggaagat
      901 tgatccttac taataaaaat cgtcccattt aaataaagac ctggcaattt gtaaggcatt
      961 ttttcttctc tgattgttac ctcatcttgg tatttattta ccaatttttc gtacaataaa
     1021 atcacatccc gcgatggagt tttttcttca tctctatata agctaaaata tcccgcattt
     1081 cttcctcggt tacgtcatca tcaatatggg ctgcaattgt taccaagcgt tcatcaacag
     1141 gtggtaaatt tctttcagga aaaaagtcat ctaatcgttt gttgaaaatt tttgcaagtt
     1201 caaataaaac gtcttgattt gcttttcgat caccattttc ataacggcta atagtttggc
     1261 gagttgtatg aagcttttct gctaatgctt cttgatttaa gcctcgttcc tcgcgatatt
     1321 gttttatttt atttcctaca aatttattta actccataat aattgccctc cacatgttta
     1381 tggcttcagt atagcacttt tagcaccaaa acggaacttt ttcgaacata tttgtcggat
     1441 aaagtttacc agtaaccaaa atggtgctat aatatttata gagctagaaa ataaatgcgg
     1501 ctgattttgc gccaatagca ccgaattggt gacaatgtta ctatattaat ttatgagatg
     1561 gaagtgggaa tggatggata gaaaactttt aaaagaaaag caaatccaac taatttttca
     1621 actagaacaa gaagaaaatc gatttattcg aaagcgttta atagaagagt tggagttttt
     1681 tgaagcgctt ggggacagag aaaaaggact gttaacggcg gagcaaaagt tgcttatttt
     1741 aacaccaagt gagtaccgag aatataaacg aactaaatca gatgtgcaaa ttagtaggtt
     1801 aattggagta tcgagatcgt ctcttgcgga atggaagcga aaaaaaggtt taaatagaaa
     1861 aaagccgcaa ccggttcagc aggaaatgat tgatgtatta gcttttcatt tagataaaac
     1921 aaaagacgaa attggcgctt tacctgcttc ggcgattgaa tgtcagtatg aggcttttgt
     1981 gattaatgaa gcgcacaatt aaggagtgat aacatgcagg ttttagtttt accagaaaat
     2041 aaggatatca attatataaa aacggtccaa gaagtaaaac gattttttgc tgattttgag
     2101 cggtttcgga tgattacggg gttatcaaaa aagccacagt tacttagaaa tggttttctg
     2161 gaagagccgc agtttgcgcc ggtagcattt tctgctagac ataataaaga ggtcattttg
     2221 gaagcgcgat ggttggtaga gaaatatact gaaatgttaa atcagatgga tgatttatat
     2281 cgcactattt tgatggaatg ttacgtggaa cgaaaacaag atgtggcggt aatgatggat
     2341 ttaccgtacg aaattgccca gtttaaacgg ataaaaaaac gagcagtatt agaaatcgca
     2401 acgctaatgg gaattttagt aaggaaatga tgatactttc gtgatatttt gaaacgtcat
     2461 tttacgatta atatagaagt aagctaattg tctagtaagc ggatgacgat aaaagctgca
     2521 tcagaatgaa ggtgcaccga ttttctgata atacaagagg ttgtacaaga aatttgtttt
     2581 tatgattata tttttcatcc gttgacataa acaaatattc tattttggaa agtaaagttc
     2641 ggaggaataa attatcaaat gtggtctcga ccgaatttta ctttctgttt ttaaaggagt
     2701 gaacgcttgg tgaagagttt aagcttcatg agagttttgg aagcagtgag aacaatgctc
     2761 caggaaaaag gcggactaga tgtttctatt gtaatgcgtg accaagtgga aatgcctaca
     2821 acgatgatcg agatgattga tcaagaggaa gaagaaagcc aaactgcctg gaaagaaaaa
     2881 taccgttttg caatccatca ttatacaaat gaaacggact tagcgggagt cgaaatgata
     2941 gatacgctta tccaaacagg gttcactttg cctgaaggat acaaattaat cgctgttcga
     3001 cattacggaa aacaaaattt agtcaaagaa aatacgttaa ttcacgcaaa aaccagtttt
     3061 gaagtaagta tttgtcgtga attaaaagta aaaatttagg gggaaatatt aatggcattt
     3121 gaagagaatt tatattgtga ttatacaccg ggagctgcta aagcggtcgc ggggaaagat
     3181 gtaattttag cagtttttaa cgcagcgggg gataagctat tagcggttgc ggggcaacaa
     3241 ggtctaactg taaaccgttc taaagatagc attgaaatta catctaaaga tacagttggc
     3301 ggatggaaat ccaaaattgg cggtatgaaa gaatggtcaa ttgaaaatga cggattatat
     3361 gtcgctgatg cagagtctca caaagaattg gcgaaatatt tcgaaagtga tagcccggtt
     3421 tgcgtgaaaa tcattaatca agcatctaaa aaaggtcttt tcggtggttt ggcaattgta
     3481 gctgactata gttttgaagc accttttgat gaagcgatga cttactctgt aaaactagac
     3541 ggaatgggtg cgcttgttga tttaacgatt actgagggcg gagatcaaat gcccggcgaa
     3601 acacctgtag caccagcaga ataaaataga gagccactga aataagtggc tttcccttag
     3661 gaggaaaata aatgtttgaa gtgaatgata caacttatat tttacgattt aataaacaaa
     3721 aagttaaaac ggtggaatta acatcaggga ttagtttagt tgcagctttg actgcgaata
     3781 aagggatttt gagctaccaa gtgattgaaa cgctatttgt ttcaggactt gtggaagaaa
     3841 aaggcttagt acctgtaaaa caaaaagaag ctttggagat tttcgacaaa ttagtagaag
     3901 aacaaggctt aatttcgctt aatgtagctg ttattgagaa attgcaagag gatatgggtt
     3961 ttttgttccg ttaaaacaga ttgaatttga gtattttggt gctgaggacg aagaagtgga
     4021 tagtgaaatg aaccatgatt ttgatttgga aaaacaattc gctttttttg tagttaattt
     4081 tcagatgtcc aagcatgatt ttgaagaact tactgaagtg gagaaaaatt tcatcatgaa
     4141 agaatgggaa aacaaggtga tttttgaatc tactatgctt cgaaatgcag ttttaaatgc
     4201 ggaacaaaat ctcaatcgaa aacgaaattc acgttttatc gacttgcata aaaaacgtca
     4261 gaagaaagcc gatgttaatt atacagtaaa tgcacttcaa gcaatttccg ataatgaagc
     4321 gaaggaaggt aaagcgtgga ttgatcggat ttatggtgca aatgggttac gaagacctaa
     4381 gaataaagaa gaaaggggga aagtgaatgg cggattctaa aagttttaca tttgaactga
     4441 acgagagcgt tttaacagcg caagttggca ggctagatga gatggcgatg gttgtagagc
     4501 ggcggttttc agagctcaaa atgactattg aagatgttgg aaatgctgat ccaggttcga
     4561 aaatttccga atctttaggt gggctgcagt ctgggcttgg cacgattagt tcggcgtttg
     4621 gacaactggg ttctagtagt gaggcgatta catccggatt cggtactgcg gttggttctg
     4681 ttggtggaat cacggatgcg tttaaaaatc taggttcaag tgtgcaaaat ggtacgttat
     4741 tttcaagctt ggcaaccggg attggtggca tgagtacaat gcttggtgga gtatctggcg
     4801 gcgttcaagg aattacaaat ctagctagtg gatttatgga attgaagaag catctaggcg
     4861 gtttgatgtc atctattggt ggcgttggtg gaattatggg taaactgacc tctccaatgg
     4921 ggttagtaat tatcgggatt gtagcgttag tagctgcatt tgcgtatttg atgacgacga
     4981 atgaatcatt ccgaaatacg gtgatgtcag ttgtaacaca ggttgcgcaa ctgttcggtc
     5041 aacttgtcgc cagtttaatg ccgattatca tgcaaattgt tactgcggtt atgcaaattg
     5101 gtgccgcgtt aatgccgatg gttatgcaat ttattagctt ttttgcgcaa ttgttagccc
     5161 aattaatgcc gtttattaat atgctgattt ccatgcttat gcctgttatt atgcagattg
     5221 ttcaagttgt tatgtcactt gtttcggcac tattaccgag catcatgaca gtgattcaag
     5281 gcattatgag cgttattcaa tttttaattc cgataatcat gcaaattgcg acggtggttg
     5341 tacaaattgt tgtaacgatt atttcttata taagtaaaat tatgccgatt gttatgacga
     5401 ttattggcgt tattgtttcg attatcacaa cgattattag ttacgtcgtt attattgcga
     5461 cgacgattgc tagtgttatt gggaaaatta ttagctttat tgcgagtgtt attacggcgg
     5521 ttatcgggat tgtgcaacca attattggct ttattactaa tatctttacg actatcgtga
     5581 cgattattgg tgcagctttc caaatggtat ttactgttgc atccaaaatc tggaatgcca
     5641 ttatgacgac gatttccgga attattgaag gaatcaaagc agtcatcaca ggtatttcta
     5701 ctacggtttc atcagtgttt aacggagtga agcgcattat tacaggtgtt tttgacggaa
     5761 tcaaaagtgc ttggggtggt ttaactgatt ttgtaggaaa tattttcgat ggtgtttcaa
     5821 gtgcaattca aaccgtggta gataatgtca aaggttttgt aaacgtcgta attcgaggga
     5881 ttaatggagc cattggttta attaataaga ttccaggcgt tgaaatcggc aaaataccac
     5941 aattaatttc cggtacaaca aatttccaag gtggctttgc tcgaatgaat gaaggcggcc
     6001 gaggcgaaat ggtggtttta ccgtcgggtt cgcaagtaat tccgcacgat gcaacgatga
     6061 aatacgcaag ggaaagtgcg cgcggaaata aatcaatcct ttacacgagt caaggcgctg
     6121 atttggctag agttgaaaat cttctcgagc gcttactaca aaaaaatcct gtaatcaaaa
     6181 tggatgacaa agtggtagcc gaggtagtta gccgtaacca agctaactca tttgatcagt
     6241 acaattacac aatgggaggt gcagcttatt catgagcgac ttgtttttag aattaaatgg
     6301 aaaagtgcat tcgcttagtg agacatttcc aggtctttct gtacaagaag tttccagaca
     6361 aagtccccag ttaagcatgg aaactgctga aatcgctggg actgatgggg ttatcccggg
     6421 aatgacccaa tttaaaccgt ttatcttttc agcaaaatgt aatttgcaag cacttgatat
     6481 tccagattat catttggcag tcagagaaat ttatgaattt ttattccagc gcgatagtta
     6541 ttatatttgg agcgatcaaa tgccaggaat tcggtatgag gtgcatccta aaccagttga
     6601 ttttagtcga gaatcggatc gtgttggttt actcactata gaatttgatg tatttaaagg
     6661 ctatgcggag tcacgtggca cgagccttga ccctatgact tttgaagtgg atttatggca
     6721 aatgggaatg aatttatcga accgtgatga tttattttat atttttaaag aaaatacatt
     6781 tcgggtctat aatgcgggga gcgaccgtgt taatccactg atgcgacatg aattagatat
     6841 tgcgatgacg gcgaatggga caccaacgat tcataatctt acaacgggag aatccttcga
     6901 gtatcggaaa gcgctccaaa aaacagatgt tttactgttg aacaatattt atccacttgt
     6961 taataaccgc cgtgttggaa aagataccaa tcatgggatt atcacccttg aaaaaggctg
     7021 gaacgatttt gaaatcaaag gtgtaacgga tgtaacgatt gcttttaatt ttccgttcat
     7081 ttatcggtag gtgatagata tggattatgt gattattcaa agtatggaca aagaagtgga
     7141 agagattcta acagacattg attacggctc cttttcctac gattatgaaa aaaatacaag
     7201 tcgtgctatc tcgtttactg tgaacaaaac gaaacagaat gcagcaattt ttgacttggt
     7261 aggaaatgaa gcaattttaa catatcaagg gcagcaattt gttattaaaa aatgtacgcc
     7321 aaaatctatt ggaggaacaa tttcaaagca gattacggcc cagcatattt gttatacagt
     7381 gcaagatcat gtgcagtata acgtgaaatc tggacgaaaa aaatattcga ttcaaacggt
     7441 attggaattt gcgttacaag ataatgtact aggattttct tatgaaattc aagggagttt
     7501 tcctttagtt gaactagagg acttaggaaa taaaaatggc ttagagctag tgaatttatg
     7561 tttggaagaa ttcggagcaa ttttatttgc agataataaa aagctttatt tttacgatga
     7621 aaaaagttgg tatgtaagga cagagaagca atttcgttat ttatataata cagaagaagt
     7681 ttcggtggat acgaacacag ataatttgaa gacggagata aaatgttacg gcaagcaaaa
     7741 agagaatgcc gataagctga ctggagataa taagtacatg gcggttgtca catatacttc
     7801 gccaaatgag gctatttacg ggaaacgaat ggcaaatgct aaaagtgatg acaaaatcac
     7861 gaacaatgat gacttattaa tttttgcaaa gaaacaaatt ctagatgttc cggagacagc
     7921 gcttactatt tcttacaaag gaaaagaacc tgttttagag cgggatgttt ggtatttcat
     7981 tcatgaaccg atggggtttg aaacagaagt aaaagtaacg aaaattaaat cgagtcatcc
     8041 ttggagtaag aagtttcaag aaattggctt cagtaattcg cgacgagata tggtccgaat
     8101 tcaaacgcaa attgctaatc aagtgaaaaa aacgagcgta gatacaaata aaattaattc
     8161 gttttcgagc atcgcaatga atgcttatga ttcacgaatt ttaacggaag tagtaggtgt
     8221 ggtagatggc gactgaaatt agagtgttaa aaaatgtaga tgatacagtt ttctatccga
     8281 agacacatgt aacggctgtg gaaggtttgg actcggctac aactactaca tctggattaa
     8341 tgcccgccag cgacaaaacg aaattaaatg gaatcgaagc taatgcagaa aaaaataatg
     8401 tgactgcaat cgatattgcc aattggaata aaaaacagga cgcaattttg gtttctgaaa
     8461 atggctctaa tttcaaaata actgtcacaa atgctggtga actaaaggca acaaaagtgg
     8521 aataggaagg aggttgcgta tgaagttgga tttatggaaa tgggaaatgc ttcttcaagg
     8581 tcgagaattt agaaataaaa caaatgacaa ctggcaaaaa ttaatggatt ggtccgattt
     8641 tatttcaaca ggtttaagcg cgatttatgt ctatgtaaat aaagcagatg ctactttaaa
     8701 taacaaaatt gatactgtgg ataaggcggt aaatgcaagg gtaaatgaat tgattagcgg
     8761 gacagagcag ttaagtgaag tggtcgacgc cagagtggat gcatttggcg cacgcttccc
     8821 agtactaaga gaacgtttaa accaagaaca ggtaatttac aataaaaaaa gcacggtgca
     8881 atttgacgtg aatactatta taaatatgga aaaacaagat attgggctgc taacaagtaa
     8941 aacaatctcg gaagcgcaaa ccgtatgttt tttaaatata tcaagcctta atgaagacgc
     9001 ggatattgtt cttgaaaaaa caggcgagac aagcttctca gaaaatttaa caagtctagt
     9061 ctttgcaaaa attggaacga atgaacgcta ccaaatggag ccagttggtg cataaaggag
     9121 gagtgagcaa tgactgaaat aaagcgaatg ctgcagacaa aagaagataa ttcaaaagaa
     9181 caattttatc cagagacgca tgttgcgggg attgttgggt tgacggaata tgtgtcaggc
     9241 cagcttccga caggcgtggt tagtgttaat ggtaaggctg ggcgcgtgtt gctagatgca
     9301 gaagatgtcc acgctgccaa aaagagccac aaccacgaag tcgcaacata cacgacggac
     9361 ggctttatga gttcttttga taaacaaaag attgatcaat tagtttcacc agaagctggc
     9421 gtgacaagca taaatggcaa aacagggatt gttgatttat tcgcagcgga cttagatgca
     9481 gcagagataa accacacgca tgcagaagca actactacag aaagtggttt tttggcaaaa
     9541 gaggacaaag aaaaactaga cgcgatgcaa ataatcgcgc tggaaactat taaggaggtt
     9601 atagaatgac taaaattgta aaaatgtcag agaaaaacga acatggaact ctagaacaat
     9661 tctatccaga aacacatgca gaggctgtta aaggacttgt gtcggtttca gaggaagaga
     9721 aggcgacatg gaacgagaaa gaaactactg cgggtgcgga acaaaaggcg aatactgctt
     9781 tgaatagtgc gaaggattat gttgatacga ttggaaaagg aacagtaata tttaaagggg
     9841 ccaatattat ggctgctggt caaaaatata catggaattc ttccaaactg aaatttggaa
     9901 tcactttatt attcagtcgt tacgattcag caaataatac tcctttagat tattattatc
     9961 actctgtttt cttatcgaaa gctcaattag cagaattagc aggtaaaggt ttgttagttc
    10021 ctatgccctc agcaacttat ggggaaagaa aatatttata tgtttctgaa acagaagttg
    10081 ctggacacaa tgataatact aataatgctt cttgggcatt acgtcagcta actgtaatgt
    10141 aactaaaaag gaggttttcc atggaagtca tactaaaaat tgggatttta ggttttggcg
    10201 cgatatttgg atacttgttt ggggaagtgg atttattggt aaaagtgctg gtgtgcttta
    10261 ttgtagctga ctatatttct gggctactcg cttcagggta tcttggggaa cttagcagca
    10321 aaatgggttt caaaggaatc gcgaaaaaaa tcgctatctt aattttagtg gctattgcgc
    10381 atcaaataga tttgattctt ggaacgcata atacaacgcg ggatgcggtt atctttttct
    10441 atttggcgaa tgagctgatt tccatcttgg aaaattttgt tcgaatggga atgaaggtcc
    10501 cggaagtatt gaaaaattta attttgattt tcgattctaa gtcaggggac gaggaggaaa
    10561 agcatgacaa agatatggat tgacgctgga cacggtggta aggattcagg tgcgagtggt
    10621 aatggacttg ttgaaaaaaa ttgggtacta actgtagcaa aacaacttca aacggagtta
    10681 gttaaagctg gttttgaagt gggaatgaca aggacaaatg atacattcta tgaattaagt
    10741 gatcgtgcga agaaggcgaa tagttttaaa gctgatttat ttatttcgct tcattttaat
    10801 gctggtggcg gtaaaggata tgaagattat atttacacat ccgtcccggc tgcaacggta
    10861 gaaatacaga aaatcattca taaaaatatt attgctaaag ttactaaaca cggaatgaat
    10921 gatcgtggga tgaagaaggc taattttgct gtattaagag aaacagcaat ggacgctatc
    10981 ttactggaag ctggtttttg tgatagcact gatgcattaa ttcttgagaa gaaagcttat
    11041 caaactgatt attgtttagg aattgtagca gcagtacaag agatttttgg ggctatggta
    11101 acaaaatata gggcaggtaa atatttgaca agtgatgatg ctatatcagg cacaaatatt
    11161 aaaggatatt tagaagcagg aacaaaggtt tttgtttata aagaaacaga aaaaacgctt
    11221 aatttaacta ctacaaaggg tgttccagga agttgggttt taaaaacaga agttaataca
    11281 ggaaaaagat aaaaaaggag cggccaattt ggctgctcct ttttctcaat taacttctct
    11341 tccgcaaaac ataaagcgca gtagtcgtta aaacaatacc gaatacagtt gcaaatccag
    11401 ctgtatcacc agttgttggt aaggatgtgt tagcagaagt tcctgttgtt gatgtgtttg
    11461 gtgtcgtagt tgtcggatct tcggtagtag tagttccgcc gtttgtgccg gagccgttac
    11521 cgttatttgt tccgccattt ccatctgtgc caccgttatt tccgtttcca ttaccattgt
    11581 ccgtgccgcc gtttccatta tctggaggag ttgttgccgc agcttgaacc gttgcttgga
    11641 aagtggtgct gtatccgttc gggtcagtga tagttgttgt gatttggtcg ccttttttaa
    11701 ggtttaaaga tgttacatct acggaaaact tgccatttgc gtcagctgtt gcgttaggtc
    11761 cggcagcaag ggccattctt gcgttagcag ttgctttttg aacagagaca gttgcgccag
    11821 gcaaagttgt tccagttaga gttttgtctt tttcggctag tttattgatt tttgttgcgt
    11881 ctttgattgc tttgatagct gcatcttcgg tttctttgtc gatttcagct tgggatttgt
    11941 agactttacg tccttctttt tgagctgtaa tgacttttcc agcagctttt tggtctttga
    12001 tgtagttgat gaatgtttca gtgtctgggt cgattgcagt tactaggttt gcttttttga
    12061 aggcagaaaa tccatcgcca ccgccaaata ggaagtcatt gattacgact ttgtattttt
    12121 ggtcggcttt taaaggagtt ccgtcttctg ttgtaacgct tgcaactttg tacgcatgat
    12181 ctaagtcatc tgtatcagtg aaagtatatt ttaatccaga aatttgtagg aaataagttt
    12241 ggttgcttaa atattgttgg tttagagctt ccaaaatatc agcaccagtc atttctacta
    12301 cttgaagaat gttaccaaat ggttgaacag cttgtgccgc gccccatgtg atttcgtttt
    12361 ggccatttgc aagacgagta gtaaggtcag aacgaattcc gccgttgtta gtcatagcaa
    12421 agtcgacatc ggcgccggct ttatttgcca tgtaacgttg cgcatctgta atcatgttac
    12481 caagctctga ttctttatca tcaattgctt tgttgtctgg attggtgtca cgagaaataa
    12541 cgtctttatt ggctagtccg atagtttcgt tgataacccc ttcaatgcgg cttttcgcat
    12601 cttcagtaac agctgtaata tcggcatttg gtgtgacgct tctcgtgttg tatgtaattt
    12661 tagcgtcagg tggtgtaacg aaatcgccgg tagttttatc aagttcgcca gttacatctg
    12721 aaaaagcttt accattgttg taactttgaa cgatacgagt ttttccgact aatccatttg
    12781 tgtattggtg attgtgtcca gcaagaacta aatcgaccga gttatttggg tctaattcat
    12841 ttgcttttgt gatcatatta gcagcttcgc cagctacatc ttgttttgtt ccagtgttag
    12901 gatttccagt agaaagtgcg ggaacgtgag atagaacaac gattgcgtta acgccttggc
    12961 ctcttagttc agcagagtat ttaacgattg tttctgcttc gtcaaggaaa tcgtagtctt
    13021 taatatgatt tgcaagaact aaattaggaa tttctgttgt aacgataccg atgaagccaa
    13081 ctttgacgcc atcaatttct tttacatagt atggtaaaaa gccttctgcg actgtgtttg
    13141 ttcctttgtt gaccacgtta gctgcgacga ttttcatgtc acttttaacg cgtggataag
    13201 cttctacgat tggtccgaat ttgtttgtag aaactccgtc caaaattcgt ttgtattctg
    13261 gtaatccttc atcaaactca tggttaccta atgtgccgac ttcgaaattc attttttgga
    13321 gaactttcat cgttggctcg tcttgaagta aacctgatac tgctggactt gcgccgacca
    13381 tgtcgcccgc ttgaacacgg atagcattgt cagttgtcgc cccaggattt gcctgtaaaa
    13441 atgagttagt ggcattatcc aaattggtag ctaagtaatc tgctccgcca attggtgagc
    13501 ctgatgcatc tttagaggct gtttcaagcg ctccgtggaa atcatttatt cccaaaatct
    13561 gaatgggaac ggtatccgct gctgcttgtg ctgttgtccc ggtgaatggt gctgtaagtc
    13621 cgattgtgag ccctgctacg agtaaaacat gtgtagtttt cttgaaaaat ttgttcactt
    13681 tcacactctc ccttttttcg ccagtggcaa ttttgtaagc gctaactcat aggtgcctag
    13741 ctataattgt agcaaagagg aatcacccta gcaataggaa atatggattt tgtgtaaatg
    13801 tagtgataat atttggctat attttcattt cgatggaaaa aagggtaaac tagagaaaaa
    13861 ggagggataa gatggatatc tcaagtacgg aaatatggga tgcaattagg agaaatagtt
    13921 atttgctata ttatcaacca aaagtagacg cgaaaacgaa taaaattatt ggctttgaag
    13981 gtttgattcg attaaaaacg gcaacaacca ttttggctcc aattgatttc tttgatgata
    14041 ttgtcctttt aaatgcaacg cgggaaatgc aagattttgt tgctgaaaca gcgataaaac
    14101 agattaatca gctaggagga cgtttttcaa tttcgattaa tattccggca cattatgtag
    14161 cgagcagtac gtatatgact tttttacatg attatgtgaa agaacattta aagtatccgg
    14221 aatgcttaga aatagagatt atcgaacgag gcgaaataac ggaactagct atagcggata
    14281 aaaacttacg aaaaataaaa gaccttggtg tcaaagtaag tatggatgat tttgggaaag
    14341 gttatagttc gcttgcgtat ttacgcagct taccgattga tattgtgaaa acagatatgt
    14401 cctttatcgc gcttttaaaa acagatcgaa aacaacaaat tattattcga gcgattgtca
    14461 atttgtgtca tgatttaggc gggaaagtag ttacagaagg cgtagaagac atggagcaag
    14521 tcgaaaaatt acgggaaatg aaagtagact atttccaggg ctattatttt agtcgaccac
    14581 taccgatgga agatattaaa gaaaaatatt cctttgtgta agatgtataa ataaaaaatt
    14641 ggttggtgtg agaatggtaa tttaccaaat tcacaccaac caattttatt ttatttgatt
    14701 aaattatttg aagcatcttt tacaaccacg tcatgcgcgc cgccttctac gatagaagtg
    14761 gacgaaacaa gggtgatttt tgctttttgt tgtaattcag ggatattgag cgcgccgcag
    14821 ttacacatag tagagcgtac tttgctaagg ctgatggcaa cattgtcttt caaagatcca
    14881 gcgtaaggaa cataagaatc tacgccttct tcaaaagata atttcttgtc gccgccaagg
    14941 tcataacgtt gccagttgcg cgcgcggtta gctccttcac cccaatattc tttcatatac
    15001 gtgccgttta aattcacttt attagtagga ctttcgtcaa aacgagagaa ataacgacca
    15061 agcatgataa agtcagcgcc cattgctaga gctagcgtca tgtggtagtc ataaacaatt
    15121 ccaccatcag aacaaatcgg aatatataca cctgtttctt caaaatattc atcgcgtgct
    15181 ttagccacat caattagtgc agttgcttgc ccgcgtccga tacctttttg ttcacgcgtg
    15241 atacaaatgg aaccaccacc aacgccaact ttaacgaaat ctgcgccagc ttctgcaaga
    15301 taacggaaac catcgcggtc aacaacattc cctgcgccaa ctttgaccgt atcgccgtat
    15361 ttaccgcgaa cgtagtcaag tgtgcgtttt tgccattcgg agtaaccctc agaggaatcg
    15421 atacacagaa tatctgcgcc agcttcaact agagcgggga cacgttcttc gtagtcgcgc
    15481 gtgttaatac cagctccaac aacgtaacgt ttggaggaat caagtagttc taatttattt
    15541 tctttattag agtcatagtc tttgcggaat accatatgga ctaggtgctc gttatcgtct
    15601 acaagtggta gggcatttaa tttgttgtcc caaataatgt tgttagcttc ttttaaagtg
    15661 gtcgatttgt tagcagtaac taatttttcg aaaggagtca tgaaatctgc tactttttca
    15721 tcagggctca tgcgcgttac gcggtagtcg cgacttgtca cgattccaag taatttaccg
    15781 tgcgctgtgc cgtcttctgt aactgctact gtagaatgac ccgttttttc ttttaaatta
    15841 aggatgtctt gaagtgtttt gtcagggctg atgttggaat cactaataac gaaaccagct
    15901 ttatgatttt tcacgcgaga aaccattgca gcttcacttt cgatggactg ggagccgaag
    15961 atgaatgata cgccaccttc tgtcgcaagc gcaatcccca tattatcatc agaaacagct
    16021 tgcataattg cggaaacaag cggaatgttc attgtgatag cagattcttc ccctttttta
    16081 aattttacga ttggtgtttt taagctaaca tttgttggaa cacattcagc ggatgagtag
    16141 cctgggacaa gtaaaaattc actaaatgtg cgggacggtt cttcaaaata aaatgccatt
    16201 atttccactc cttcttctat ttttaaatga atttataaaa tatctttatt atttcaataa
    16261 ctggatggaa agtcaatgat tgggggagct ttttcggacg ttttcttttg ggggaagagt
    16321 ggaatagatg aaaggtagag aaactttggc gaaggaggta atcagatgga cgaagaaaca
    16381 ttgctagaac gtggctaccg gaagtatcgc ggggcggagg tagatattta ttttaataca
    16441 aatatttgcg agcattcggg taattgtgta aaaggtaacg cagaactttt taatttggat
    16501 agaaaaccat ggattatgcc ggataatgta tcgaaagaag aagcgaaacg ggtgattcat
    16561 acttgcccga gtggagcgct tcaatatatc gaaaaatagg aggatatcag atggaatata
    16621 aaaacggtga aaatagaatt tatgcggtaa atgatgaagg agtcgaggtt ggtgaagtga
    16681 cttttgtgcc aactggggaa gatatgttta ttattgacca tacaggcgtt gatgatgcgg
    16741 ctcgaggtca gggaatagcg caagaacttg tgaaacgtgc ggtcgaaaaa gcgaaaacag
    16801 aaggaaagaa aattgttccg ctttgtccgt ttgcgaaagc agaatttgct aagaagccgg
    16861 aatatcaaga agtacaagct gcaaaataag aagtgtagac taggttttat gcctagtcta
    16921 tttttataaa aaattttaga attccggttt tctcttcttg acatctgctt tgtttcagtg
    16981 tatctttaat tcacagtaaa cttataggaa taatagtatt acgttttctt atcaagagcg
    17041 gtggagggaa tcggcccagt gaagcccagc agcggagcgc aagttctatg ctaattccga
    17101 tcagaagtaa tattctggca gataagtagt agcttttaat gaggcgcttc gattctgacc
    17161 aaaaaacaga ggaagcgtta ttttttagcg cttaaagagg ggagtttttg ttagatgaag
    17221 aaatttttat tagtagcggt tatctcggtt tttgccttgg tgttaacggc ttgcggaggc
    17281 tctggcgcta gttcagacaa agcaaatggt tcaggcaaag cgaaagacgg cggctctcta
    17341 attatcggcg ttactgggga tccagaagtt atcaatccga actacgcttc tgaccgtgta
    17401 acattaacga ttcaacaagc tgtttacgca ccgctatttt gggaagttga cgggaaaccg
    17461 gcacttgcaa aaagcttaga tatttcagat gacaacttaa cttacactgt gaaactaaaa
    17521 gatggtttaa cttggcacga cggcaaacct ttaactgcag acgatgtagt atttactgta
    17581 aattctattt tagatacaaa acaaaacagc ccgaaccgcg gcaactttgt ttttgacgat
    17641 aaacctgtaa aagtagaagc agtagacgac acaacggtga aattcacttt accaactgtt
    17701 gctccagcct ttgaaaatac aattaaaact ttcttcccaa ttccaaaaca catttttgaa
    17761 ggggtagaaa acatcgagaa aagtgataaa aacaaaaatc caatcggctc aggtccgtac
    17821 aaatttgttg aatacaaaac aggcgaatat gtttccctag aacgattcaa cgactatttt
    17881 gacggcaaac caaaattgga taaagttact ttccgaatca caaaagacca aaacgctgct
    17941 aatttagcac tgcaaaatgg cgaaatcaac ctaaaatcca ttcaaccttc tgatagaaac
    18001 aaagtagaaa aagcgagcgc ggtaaacatt atcacttacc cggaaaatcg cttaagctat
    18061 gcaacattca acgaaaacca accagcactt aaatcaaaag aacttcgcca agccctttct
    18121 tatgcgcttg atcgtgaaga aatcattgat gctgcatacg gttcagatga atacgcaaaa
    18181 ccagcttcct cgttcctaac agaaaacaca aaatatttca cggataaagt agaaacatac
    18241 gaccaagaca ttgccaaagc gaaaaaatta gtaaaagaaa gtggttttga tacaagtcaa
    18301 aaactaactg tttactattt aaacaacagt aaatcacaag aaagtatcgc gctttacttg
    18361 caacaacaat acaaagaaat cggcgtgaca cttgacttga aaccaacaga tccaaatgca
    18421 ctaagcaaca tcacacttga ccgcaaaaac gcagactact ctatcgcact aaatggttat
    18481 atcatgggga acgatcctga tgcgtataaa tccctatacc taagcgatgc gccatataac
    18541 tattcgaact accacaacaa agatctagat gcactttggg aaaaaggtgc tgtaactgca
    18601 gacgataaag aacgtcaaga aatctatgaa aaaatccaaa acaccattgc tgatgacgct
    18661 gtaatttatc caatttctta tgataatgca gtgctagctc ttgatagccg ttacggtggt
    18721 caaaaagctg ccacaccaca accagtaacc atgttccgtg atctttctaa actatattta
    18781 acggaataat aattaaaaat cattcgtaaa aaatctggcc tgccatgctt gtttttggca
    18841 ggttcaggtt tttacttgtc atttttagtg ttttagatag gagataaatt atgctaaaaa
    18901 caatcataaa acgcgtattg caaattattc cgatgctatt tattatctcg attatttcgt
    18961 ttgcacttat aaaattagcg cccggggatc ccgtgaattc ttttgttacg cctgatatga
    19021 atcctgacga tgtggaacga attagacaaa gtttaggact tgatcaacca atttatgtgc
    19081 agtactttat ttggcttgga aacttgttgc aaggaaatct tggttattcg attgtgaata
    19141 gccagccagt tttgcaacaa attttagaga gaattccggc gacacttggt ttggtgggaa
    19201 cttcgcttgt tctgacgcta ttattatcga ttccacttgg tttagttgcg gcgaattacg
    19261 aaaatacgtg gattgataaa gtattaaacg ggatttcata tattgggatt tcgattccga
    19321 ttttttggtt tgggatgatt ttaatagatg tattttcgat tcagctaggt tggcttccaa
    19381 gtctagggat gcgaacgatt ggggtcgact ctttttggga tatggcggag catgcgattt
    19441 taccagttat aacgctgact ttccaagggt gtgcggcata ttatcgttac gtacgctcga
    19501 ataccatcaa ccaattaaaa gaagaatatg ttttgtttgg ttatgcgaaa ggtctatcca
    19561 aagtgcaaat tatggggcat catgtcttga aaaattcctt gctaccagtt ataacactac
    19621 ttgggatgtc acttccgcaa gtcattacag gcgcttttat taccgaaagt attttttcat
    19681 ggccgggcat gggctcgctt ggaattaacg cgattttcca attagattat ccagttatta
    19741 tggcgattac gctattttca gcgctgttat taattatcgg aaacttgctg gccgatttag
    19801 cttatatgat tgtcgatccg cggattaggg aaatggggtg aggagttcat gatgcgatta
    19861 gatttttcga aaaaaacaat gcaagatttc gagcgggatg cagaagttgt tcacgcaaca
    19921 cgagagcgta gtttttggcg ttttatgctt gctgaccgcc gagctgtttt tgcgacgagt
    19981 gtgctaatac ttattacggt ggcttgtatt ttcgcgttcc tttcgcctta tgaccctaat
    20041 gctctttccg ttcaggacaa actgatgccg ccaaattcgt cgcactggtt tgggacggat
    20101 gaccatggtc gggattactt gacgcgtgtc ttgtacggtg gccgggtttc actacttgtc
    20161 ggtgtatttg cgatgatgat tgccgttgtc gttggaacgc ttgctgggac agttagtggc
    20221 tactttggtg gattcattga caatatggtg atgcgttttc ttgatatttt catgtcgatt
    20281 ccgtcatttt tcctactaat gattttaaat gcatacttaa aaccgggaat ttcgaacatt
    20341 attatcatta tcggattgct ttcttggatg gaagtggcgc ggatagttcg agcggagacg
    20401 ttaacattaa aagaacgtga attcatttta tactccaagt catcaggtgg cggatttttc
    20461 cacatcatgt tcaagcacat tattccaaat gcgatgccat ccatcgtcgt tgcagcttca
    20521 ttaaacgtcg ctacagccat tttaaccgag tcagcactaa gtttccttgg cttaggcgtt
    20581 caacagccta acgcttcgtg gggcagcatg ctgaacaatg cgcaaggtta cgtcggcgaa
    20641 gcaacatact tggcgctttt ccctggatta ctaattttaa tgaccatcct ttcattcaac
    20701 gtccttggcg atgtactgag aaaagggtta tcacgtagat attaaatgta aaaacacttt
    20761 gattttttca gtcaaagtgt ttttttgttt tttaaagaaa aggtacttaa aatagaaacg
    20821 taaaaaacgt gttttagcca atttccaagg cataaattca caaaacgctc acaaaacgag
    20881 aatgcgtgcg gtgctataat taaggataag gtttcattat tatagacaga gatgaggcgc
    20941 agaaatgagt gaaataaaag ttaaagaagc aacattaaaa aaacacgcga caaagttaga
    21001 atcaaaaggt aaatcaaccg aatatttacc aatgaaaggt ggcaatatgg cttacagtca
    21061 agccaattcc atcaaccatt ttcgaacagc attgtttgac ttggtagacg cggtggacaa
    21121 ttttcaaggt gtggtaggaa cggatgccaa aagattgaaa gaattaggcg tatcatttac
    21181 tcgcaaagac caagagcttg aacgaggcat gggattggga ggtaaataaa tggatgcaaa
    21241 gagccagcaa atggagacac aactgcaact gctgaaaaaa gaacaatccg cggccgaaga
    21301 ttttttgcaa gatttacaac gacaacaaaa tgaacaagag tggttagcag aagattttgc
    21361 acgtgtccat caagaagaac gggagtcgct ggagcttcta cgcgaagttt ggcaaggcgc
    21421 agaatcaaga agtttcggct actatttggc agatctacag gaagaagaaa aacagaagtg
    21481 gcataaaaaa atccaagcaa accaagaaga acaccaacaa aaaatcaccg cttgccaaaa
    21541 taacatctac caattagaaa atcaacaaca agatttacaa aaggagttgt tacagtgagc
    21601 cgaattgaca tcggagaaat acaaaccttt gcgcaccaac tacatacagc taatgaagcc
    21661 ggaagaaaaa gcattaaaga catcaaaaaa gccgtgaaaa actataccga agacggcagt
    21721 ttaaaaggaa aagcgattga tgcatcgaaa attactatca aatgacctat tttccattat
    21781 gtgatgcgat aatcgaagca atgaacgaaa gcgaagaacg attagcgcaa tatatagctg
    21841 atttccacgc ccaagtaagt ggacggttct gctgatgcga gaattgatgc ggacggctta
    21901 tacgaactcg ggaaaatgat tgatcgcatc gaagcgaaaa aagaagcact agcccagcga
    21961 atgaatactg gaacagaagg gcaaatgcaa agttaccgtt cccagctgag tatcgcctac
    22021 aaacaagaaa atatcttaga aaaatacttg gcttttgaac aaagtcatgg cggttttttt
    22081 gataatttaa ccgatttagt ccaaggaatt cagcaaacca ttcgcgaact ccagtcgaat
    22141 attcagttta acagtaaaac gggcacctat gatatgagca aattgaattt caccaccgta
    22201 acccggatgc aaaatgcctt aggaaaagcg ctaaaaaata acgaaacaac attcaatttt
    22261 gacgaatatc aaaaaacgta ccgtggtcaa atgtgggtgt taatgaaaaa tggtatagta
    22321 gacgtagaag caacgaacgc gtacaatgcc gccgtgctta acggggaatt agcacataaa
    22381 agcaatgaag cacaggaaga agccgagttg ttgcaggcag ttattcaatc ggtgaaagaa
    22441 ggaatagacc cggttactgg gcaagagata agtaaagcgc aagggtttgg tattataagt
    22501 ggtcttgttt tccgctatac tgctggaggt tataaaggga agaagttcaa ggtttctaaa
    22561 gattggttac acagaagaaa gaaaaataat ggcgttgaag ttggaacgga ctttgggaaa
    22621 ataggtaaat tagttaatca tcctaatatt aaaataaatt ggtctgaaca ctccgaacat
    22681 ggaatgtcta gattgaaaca acgtggtctt tctaagagtc aagttgacga ttttgtggag
    22741 cgtggaaaag ctttatccca gaatggggga gaaaaatttg cttttataac tgaaaatggt
    22801 gttgcaattg tcagcaaaga tggcaaatta gttactgctt ggggtaaaaa agattttgat
    22861 gaaggaatgg aaaaaataat agaaaaattg tatggaaagt agggtgtcat tatgtatgaa
    22921 aaagtagaaa aaataataaa tgattgggat ccaatagagc
//
LOCUS       DASDXX010000024        22928 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.024, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000024 DASDXX010000000
VERSION     DASDXX010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22928
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.024"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            97..1911
                     /locus_tag="U0280_000754"
     CDS             97..1911
                     /locus_tag="U0280_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HEM2270709.1"
                     /translation="MDKDYFTMRAHLYNITTDLEVSFKLNDVANIWFCTTKNAKRKLQ
                     QYQAKKMLTYLPGLGRGNVSRIIFPKQLELEVLDVLEQSLAEDAFSDILFLLQLPIPK
                     SWFTSISTEIQQIFGLQVTENQQEVLRSIVRRKLTTLDPLQTSVSMEAFLITQISDSL
                     VKYDEEKKKIIPHIAHHWKVSDDFTEWTFYLRKSVLFHHGRMLDSEDVKHTLMRSMQT
                     ESVSFWQLQDIQSIHCPNKFTISIQLKKTDPFFIRYLCTANMAILPRDIIFDEYTWIS
                     TGPFRVAERNDERLVLEAFDGYFLERPILDRVEFWTAQTGNNLKTIPMQFTSVDYEEN
                     LAYVERRKPGVGVNFICFNTHRNGAPQHPAFREAIYHLIDCQKASEQHFENYGTVASN
                     YYPEKSLPPKKHPEKIATLLKKANYQGEKVIFGTTQHPTAVKESKWIQEQAVEFGINL
                     ERKIITHQEASYSNVPAKETDFMMMGEIPASDDEMAYLDFLNNPYLLPQQLFNQAIIK
                     ELTEKLDAFKTEKDASKRDALQTSIDSWLTENHYLIYLHHPEKSQSLHSMIKGIAENP
                     YGYFDLSKVWIEISPLKTLKPDYRQSHRGKAPHTITQK"
     gene            complement(1841..2227)
                     /locus_tag="U0280_000755"
     CDS             complement(1841..2227)
                     /locus_tag="U0280_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 domain-containing protein"
                     /protein_id="HEM2270710.1"
                     /translation="MFDWLTNSTAIIIILPVVVFILTMFFSSFKLKKSQRRIMLAADL
                     STIFLIIAVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKILRGYWR
                     LCFFIFALLYVALYLYGIVYSLVLMF"
     gene            complement(2220..3113)
                     /locus_tag="U0280_000756"
     CDS             complement(2220..3113)
                     /locus_tag="U0280_000756"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEM2270711.1"
                     /translation="MANQLKVGIIGAGAMGLLYAANFADTSELTLFTRRKEQSDLLNQ
                     KGLSLKDNSELKNIHIQATVITDIKKLSEQQLLIIAVKQYSLKSILPLLQSIPERVPL
                     LFIQNGAAHLDSMPLLGNKRTILLGISEHGAGREDDTTVIWRGHGRTKYSIYQGELSE
                     AVTKTLDSNPDFPVEKHASYLDIINEKLFINAVINPLTAVLQVQNGKLLENKEWHELL
                     KTIVKEIQTVLPVENALEKVEVICQVTATNFSSMALDRMDNRMTEIDGIVLPILEKGE
                     SLPTLHALYHLIKGLEGESDV"
     gene            complement(3263..3436)
                     /gene="rpmF"
                     /locus_tag="U0280_000757"
     CDS             complement(3263..3436)
                     /gene="rpmF"
                     /locus_tag="U0280_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM2270712.1"
                     /translation="MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCP
                     ECGQYDGKDVANS"
     gene            complement(3527..4063)
                     /locus_tag="U0280_000758"
     CDS             complement(3527..4063)
                     /locus_tag="U0280_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEM2270713.1"
                     /translation="MKWSISQLKKYRDSNFTINEKADLKKFFQENNIDVRDASPVQVT
                     GELIVHPEEVTANLTMKGDWTLPCARTLEDVIYPYEVHATETFVKSKEQVLDESWHVM
                     EQDMVDLTPVVEELLLVEIPMQVFSEDALEMSNLPRGNEWEMKTEEGNLLEQIAKEPK
                     VDPRLAGLANFFDEKKED"
     gene            4193..5365
                     /locus_tag="U0280_000759"
     CDS             4193..5365
                     /locus_tag="U0280_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEM2270714.1"
                     /translation="MKATGIVVEYNPFHNGHKLHLNKARELTQADVVIAVMSGSFVQR
                     GEPAILPKWERTRMALAAGVDMVVELPVSFATQHATIFAEEAVRILDAIHVDTLFFGS
                     EHGVAEDFTLAAKKVVENEARFDEAIQLALVDKKTSYARAYTEAFKKLFGQNLLDITK
                     PNNILGFHYALAAQKQNPSISLQTIPREHAGYHDEEANHDQIASATAIRKLILAGKLE
                     EASHYLPASSIAILRNYEGPFLSWTDYWSFLQYRLIQAGSEELEGIRGVSEGIQNRMQ
                     QAATKAQNFSDFIELTKTKRYSNARLQRTALQILLNARSQTSSPYIRILGMNKTGQQY
                     LSLHKKNISLPIITTVSKAPAGLLEEELRATNIYTLAKGLENYQAGDFHIPPILTL"
     gene            5447..7687
                     /locus_tag="U0280_000760"
     CDS             5447..7687
                     /locus_tag="U0280_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM2270715.1"
                     /translation="MVQEYIRLRGARENNLQNISLDIPKRKITIFTGVSGSGKSSIVF
                     ETIATESQRQLNETYSAYLRNFLPKYTQPDADSIENLSTSVIIDQKRLGGNSRSTLGT
                     ITDINSILRLLFSRVGKPSIGTANLFSFNDPAGMCPDCHGVGQKVSVDLVKLLDPNKS
                     LKEGAILFPTFSVDSWYWNSYAYSGFFDVNKKIKDYTDEEYDMLLHGKDIKVFLETPM
                     GSMNATYEGLIPKFNRLYIQKEGEMSASTKKRVDKFTHIAPCTTCEGTRLSAQALSCT
                     INGANIADFTAMQLDELKATIASIDDPIAAPMVKSVTERLQHLIDIGLGYMTLDRQTA
                     SLSGGESQRVKMIRHLNSSLTDLLYIFDEPSIGLHPRDVHRLNELLVKLRDKGNTILV
                     VEHDPDVIKIADHIVDVGPHAGKHGGEIQFVGSYTDLLKSDTLTGKFLNRHLPINSKP
                     RQPKGFLTTEKSSRFNLKDIQANIPKEILTVVTGVAGSGKSTLIHSVFLKEYPDAIVI
                     DQSAAHANIRSNPATYTGIMDPIRKAFGKENDVSPSLFSYNSKGACENCKGLGFTTMD
                     LAFMDSIRTPCEVCHGKRFQDSVLQYKLNGKSISDVLELTVSEALDFFTDKKILKKIE
                     AMEEVGIGYVTLGQALSTLSGGECQRLKLANELHKKGSIYIMDEPTTGLHMSDIEHIL
                     TIIHSLVNKGNTVIVIEHNVDIIRNADWIIDLGPEGGSAGGQIIFEGAPLDLLENKQS
                     LTAKYL"
     gene            complement(7730..8770)
                     /locus_tag="U0280_000761"
     CDS             complement(7730..8770)
                     /locus_tag="U0280_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEM2270716.1"
                     /translation="MRKEWKKITAIVLLIIIIAGFFIPVPYYISKPGGTEELAPLVTV
                     DDHPNKKDGSLSLVTIAMGKANIYTYMTAKFLPYHELEKDSDIKYENESDEEYNVRQM
                     QMMNESKNNAIQVAYKAAGQEVKVTYDGVYVLSVKDDVPAADVLHAGDLITEIDGNAF
                     KSSQEFIDYIHSKKVGDTVKINYKHGDKNEQANIKLTAIDKKGTPGIGITLVDDEKIT
                     ADPTVKIDSEKIGGPSAGLMFSLEIYSRFQKNDLTDGKKIAGTGTIDPDGTVGRIGGI
                     DQKVVAADKSGAKVFFAPNDPITDEMKKSDPSIESNYDTAVKTAKDIDSKMKIVPVKT
                     FQDAVDYLEKLQ"
     gene            complement(8789..9271)
                     /gene="coaD"
                     /locus_tag="U0280_000762"
     CDS             complement(8789..9271)
                     /gene="coaD"
                     /locus_tag="U0280_000762"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEM2270717.1"
                     /translation="MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKK
                     PLFTIEERMEMIRQVTAHLPNVQVESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQ
                     IASMNRTLNAEIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNEQVQAKFK
                     "
     gene            complement(9274..9831)
                     /gene="rsmD"
                     /locus_tag="U0280_000763"
     CDS             complement(9274..9831)
                     /gene="rsmD"
                     /locus_tag="U0280_000763"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEM2270718.1"
                     /translation="MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDM
                     VLDLFAGSGGLGIEALSRGAERAVFIDQAALAIKTIRQNLEGCHFTERAEVYRNDAER
                     ALKLLHKNEWKFDLVFLDPPYKKQQLEKLLVTLEKLELVNENGRIICEHDKEAIMPDT
                     IGKFEKIKSVSYGITVLSIFEFQEA"
     gene            complement(9928..10209)
                     /locus_tag="U0280_000764"
     CDS             complement(9928..10209)
                     /locus_tag="U0280_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HEM2270719.1"
                     /translation="MENDRQAIVVWMNHLKQVRSLKRFGNVHYVSRKLKYAVLYCDMA
                     EVEDISNKVSRFHYVKRVEMSFRPFLKTEYESKKEMMYEHKNEDVQISI"
     gene            complement(10240..10689)
                     /locus_tag="U0280_000765"
     CDS             complement(10240..10689)
                     /locus_tag="U0280_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF family regulator"
                     /protein_id="HEM2270720.1"
                     /translation="MLATMENMALLDLSDELASMILNSEEAQNYKLAKEALLNDATSQ
                     KNIRQFIRIKEQYEEVQRFGRYHPDYKEVTRKTRAYKREVDMDQNVAAFRRAEMDLQS
                     LLDEISLLLASAVSENIKVPTGNPFFETKSACSTGGCGSGGGCGCSA"
     gene            complement(10737..11792)
                     /locus_tag="U0280_000766"
     CDS             complement(10737..11792)
                     /locus_tag="U0280_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEM2270721.1"
                     /translation="MKFIMRVAVLLIICLFIGYNTDLFFSKSVEKNTAEDTATKSNFP
                     DNKKTTNENPKQVQDSSSLARFINKNVSELKKEFGDPVRVDKTAYGYDNYIYSQPGTS
                     YMQVGVTKNIVQTIYALGQDLNVMPYTIGMSTEKVFTDANLQSEISFNYKDSYYKFEL
                     SEEDLNARPIVNIGSGVYAQLNFDKFKSKLISVRYLNKLSFVKMRPYELSYQGEIYEE
                     KLTPADWNAIDDASSKQVLEITNVIRDRYGIEEVAWDESVAKVAYGHSVDMKKNDYFD
                     HTSPTQGDLSKRLSKGDVKYTKAGENIAYNYVDSAAAVEGWLNSKGHRENLLDGSYTY
                     MGAGTYRKYYTQNFIIK"
     gene            complement(11940..12845)
                     /locus_tag="U0280_000767"
     CDS             complement(11940..12845)
                     /locus_tag="U0280_000767"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HEM2270722.1"
                     /translation="MNQIEKTGELSASRFTVRDFTELVKIGIVNSNTITAFTGMWLAF
                     QLNGISFIQNVDVIFFTIVGSALIVAASGAFNNVIDRDIDGIMERTKNRPTMTGKISG
                     KRALMVALVLGVVGTIMLFMTTWQAGVLGVIGVFLYVVVYSLYAKRKLVSNTVIGSFS
                     GAVPPLIGWFAVEPSFSIVPIMLFLVMFCWQPPHFYAIAIKRKEEYAAAGIPMLPVVK
                     GIERTKKSMFFWVILLTILPFFMFELGIVYVVLATLLNIGWLALSIYGFKMEDSIKWA
                     KWMFVYSLNYMTILFVAMVVISIFL"
     gene            13081..13998
                     /locus_tag="U0280_000768"
     CDS             13081..13998
                     /locus_tag="U0280_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HEM2270723.1"
                     /translation="MKKFLKVWSVLTIICMTVVVFGGALVTKTGSADGCGNSWPLCNG
                     QLVRLTDVTPEKLIEFMHRMTTGISSIFVIVLAICAWIYMKNRRETKPLAIIAVLFLI
                     IQALMGMAAVVWGQNPYIMALHFGISIICYASIVLLALMIFEVDRKFDARNLVMGTKL
                     RINIYALTIYTYLAVYTGALVRHEKASMAVPVWPFENGHFIMPTSVQDYVQYFHRLAA
                     FILIVWLLYVTWLVFRDYRRYRVLTFSMVLSLVFIALQAVTGALSVYTGVNLYIALAH
                     SLIITMLFALLCYLCLLASRSKSNRLRIK"
     gene            14106..14849
                     /locus_tag="U0280_000769"
     CDS             14106..14849
                     /locus_tag="U0280_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEM2270724.1"
                     /translation="MDKTKRKMIYETFMLILIVLSLALLPYRNSFTFILNWIIWVIFT
                     LDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGFRAARIVSFVHLLSITAMGRRYIVP
                     IYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIV
                     PVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKATTSSTQRASKITQLIADTPDL
                     TKEEIAVVEQFLALRKKELADENIKSDSE"
     gene            complement(14855..15496)
                     /locus_tag="U0280_000770"
     CDS             complement(14855..15496)
                     /locus_tag="U0280_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEM2270725.1"
                     /translation="MERKIMHLAVGKPKELNLSNNKRMMTGIEKKLVQSASLTTTGFE
                     NDAPHNLKYHGGPDRTVCIYPYEHYAKWAAMFGEELQVTAFGENLITTNMLESSVQIG
                     DKFQIGETVIQITEARNPCSTIEKFNGIPNLYKAIHKTGLTGYLCRTITPGIIHATDE
                     IKQIHQESHGVTVAFCHDKVLHKNGTKEDLERILAVEALSERYRNQVEKQIKK"
     gene            complement(15515..16132)
                     /locus_tag="U0280_000771"
     CDS             complement(15515..16132)
                     /locus_tag="U0280_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1775 domain-containing protein"
                     /protein_id="HEM2270726.1"
                     /translation="MKKIISSIVVLLAVFIIPFQASAHVSVLPSESTVDSWETYTMKV
                     PSEKDVASKKIVLKVEKGVSFESYEPVPGWTTTVDKKNGTVTWQTEGNGIEKGQFQRF
                     SFIAKNPSEEGEIAWNAYQYYEDGSIVEWVGAEDSETPHATTKIVKESSKSATGSHGE
                     VVAGAENTAGDTSSTGDNTILLWTAVAISVIALITGILAILSRKK"
     gene            complement(16145..17770)
                     /locus_tag="U0280_000772"
     CDS             complement(16145..17770)
                     /locus_tag="U0280_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HEM2270727.1"
                     /translation="MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTA
                     PEKVTLVFNEEIEADFPLIEVKDSSGKQVETGKTTVSKKNNHMVEASLPADLKADVYS
                     VSWRVVSADGHAVTGIISFKLGDTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFI
                     GVLLFGLGLYPRKEQLTEKISGRLKKVTWVALALLGVALFMQLFIQTSITTGVSISES
                     FGPSKLVAFLTTKTGYIWISELIVWLLLAIFTIMMFFKKKQWSWFALLTESALIGYLI
                     FAKAQNGHAAASADKIVSISADMLHMIAASVWVGGILVLLFVLPQTGKARAVWSRFAI
                     VAIIAVASILVSGLLMAVMNLGQMANLFTTNYGKILLFKIGLFLLMALLGLGHYIYIK
                     LKNQRLPFKTILMELIIGTIILVVASVLTNVQTPPPPAPKAFDETIAAEGEKAKINLR
                     VEPATVGQNQFIITFTSADGSAKTDFEQVTITTKSTKTDEKSTFQAKLANDTQYFAEG
                     LYINQTGKWEITVHGLTKDFTDINQTFTTNITQ"
     gene            17910..18101
                     /locus_tag="U0280_000773"
     CDS             17910..18101
                     /locus_tag="U0280_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270728.1"
                     /translation="MLRYIELFFMFAFVTLITMWIQALLAKWKPTILRSFWLRTLTFI
                     IIGYALMAPTLYIGSLLLK"
     gene            18163..18549
                     /gene="mscL"
                     /locus_tag="U0280_000774"
     CDS             18163..18549
                     /gene="mscL"
                     /locus_tag="U0280_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEM2270729.1"
                     /translation="MKKMLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMP
                     LVGVLLGGLDFTDLSFKVGKSVIQYGAFIQSIVDFVIIAFAIFIFVKVLTSFIKKKEQ
                     TVEETPVPPTEEYLKEIRDLLKEQQK"
     gene            complement(18684..19076)
                     /locus_tag="U0280_000775"
     CDS             complement(18684..19076)
                     /locus_tag="U0280_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270730.1"
                     /translation="MNWTRISSIVIVGFTAIGAIYGGLSMVFMPSGGLLSLSTGLLDG
                     SPFVDYLVPGIFLFVFVGLFHLAALIYLLKKLPRTKEVMFAAAAVLAVWMIVQLLIIG
                     YVFILQIIFLVVAAVEMFLAIQLKKQQR"
     gene            complement(19121..19330)
                     /locus_tag="U0280_000776"
     CDS             complement(19121..19330)
                     /locus_tag="U0280_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270731.1"
                     /translation="MRENSIIGRIIAFCAICFAFFNPKTVTYWLGVRAESGPAWYLTT
                     VVACGIAVFVLIDLIKKIKRRKTAE"
     gene            complement(19481..20458)
                     /gene="bsh"
                     /locus_tag="U0280_000777"
     CDS             complement(19481..20458)
                     /gene="bsh"
                     /locus_tag="U0280_000777"
                     /EC_number="3.5.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choloylglycine hydrolase"
                     /protein_id="HEM2270732.1"
                     /translation="MCTSITYTTKDHYFGRNFDYELSYKEVVVVTPKNYPFHFRKVED
                     IEKHYALIGIAAVMENYPLYYDATNEKGLSMAGLNFSGNADYKDFAEGKDNVTPFEFI
                     PWILGQCATVKEARRLLQRINLVNISFSENLPLSPLHWLMADQNESIVVECVKDGLHI
                     YDNPVGVLTNNPTFDYQLFNLNNYRVLSSETPENNFSNEIDLDAYSRGMGGIGLPGDL
                     SSMSRFVKATFTKLNSVSGDSESESIGQFFHILGSVEQQKGLCDVGGEKYEHTIYSSC
                     CNIDKGIYYYRTYGNSQITGVDMHQEDLESKELAIYPLVNEQQLNIVNK"
     gene            complement(20713..22341)
                     /gene="groL"
                     /locus_tag="U0280_000778"
     CDS             complement(20713..22341)
                     /gene="groL"
                     /locus_tag="U0280_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465592.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEM2270733.1"
                     /translation="MAKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFG
                     SPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEG
                     LKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEVGKLI
                     AEAMERVGNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYI
                     LITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGA
                     GDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVKVGAATETELKERKL
                     RIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAALEAEGDVETGINIVLRSLEEPVRQ
                     IAHNAGLEGSVIVERLKHEAVGVGFNAANGEWVNMIDAGIVDPTKVTRSALQNASSVA
                     ALLLTTEAVVADKPDENGPAAVPDMGMGGMGGMM"
     gene            complement(22375..22659)
                     /gene="groES"
                     /locus_tag="U0280_000779"
     CDS             complement(22375..22659)
                     /gene="groES"
                     /locus_tag="U0280_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEM2270734.1"
                     /translation="MLKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGS
                     GRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAITK"
BASE COUNT         6651 a         4656 c         4157 g         7464 t
ORIGIN      
        1 tttttctgac ttctctgcta gtataaaagg gatacataaa tttaaaaagg gtattcattt
       61 tcatatattg tcccctttta ggacggagct gttgttatgg ataaagatta tttcactatg
      121 cgcgcgcatt tatacaatat aactaccgat ttagaagtgt ctttcaaatt aaatgatgtg
      181 gcaaatattt ggttttgtac gactaaaaat gccaagcgta aactgcaaca atatcaggcg
      241 aaaaaaatgc ttacttatct tcctgggcta ggccgaggaa atgtttcaag gattattttt
      301 cctaaacagt tagaactaga ggttcttgac gttttggaac aaagtttggc tgaagatgca
      361 tttagcgata ttttattttt gctacaattg cctatcccta aaagctggtt tacaagtatc
      421 tctacggaaa ttcaacaaat attcggtttg caagtaacag aaaatcaaca agaagttctg
      481 cgctccatcg ttcgtcgcaa gctcactacc ttagacccac ttcaaacttc tgtatctatg
      541 gaagcatttc tcatcaccca aattagtgac tctctcgtca aatatgatga agagaaaaag
      601 aaaattatac ctcatattgc acaccactgg aaagtatctg atgattttac ggaatggaca
      661 ttttatttac gaaaaagtgt tttatttcat cacggacgca tgctggatag cgaggatgta
      721 aagcacacct tgatgcgttc tatgcaaaca gaatcggttt ctttctggca attacaggat
      781 attcaatcca tccactgccc taataaattc acgatctcca ttcagctaaa aaaaacggac
      841 ccttttttca ttcgttattt atgcacagcg aatatggcta ttttaccgcg agatattatt
      901 tttgatgaat atacatggat ttctactggt ccctttcgag ttgcagagcg gaatgacgag
      961 cgcttggtct tagaagcctt tgatggatat tttctcgaga gaccgattct tgatcgagta
     1021 gaattttgga ccgcccaaac tggaaacaat ttaaaaacca ttccaatgca attcacttcc
     1081 gttgattacg aggaaaatct cgcctatgta gaacgtcgta aacctggtgt tggtgttaat
     1141 tttatttgtt tcaatacgca ccgaaatggc gccccacaac acccggcatt tcgagaggca
     1201 atctaccatc tcattgattg tcaaaaagca agtgaacaac atttcgaaaa ctatgggaca
     1261 gtcgcatcta actattatcc tgaaaaatcc cttccaccta aaaaacatcc tgagaaaatc
     1321 gctactttat taaaaaaagc aaactaccaa ggcgaaaaag ttatttttgg aactacccaa
     1381 catcctaccg ctgtaaaaga gtcaaaatgg attcaagagc aagctgtcga attcggaatt
     1441 aacttagaaa gaaaaatcat tacgcatcag gaagcttcct attccaacgt tccagcaaaa
     1501 gaaaccgact tcatgatgat gggagaaatc ccagcctcag atgacgaaat ggcttattta
     1561 gattttttaa ataaccccta tctgttgcca caacaacttt tcaatcaagc aattatcaaa
     1621 gaacttacgg aaaagctcga tgcatttaaa acagaaaaag acgcctccaa aagagacgcc
     1681 ttacaaacga gcattgatag ctggttaaca gaaaatcatt atttaattta cttgcatcat
     1741 ccggaaaaaa gtcaatcgct tcattcaatg ataaaaggaa ttgcagaaaa tccttatggt
     1801 tattttgatt taagcaaagt gtggattgaa ataagcccgc ttaaaacatt aaaaccagac
     1861 tatagacaat cccatagagg taaagcgcca catacaataa cgcaaaaatg aagaagcata
     1921 ggcgccagta accacgtagg attttgcgga actgaatctc gccttctttc tttgcagccg
     1981 tgacaacaat tacaatacct aaaataaata aaaacaataa aatatataat aagaacgagc
     2041 gattaaatag cacaatcatg aaaaaatgaa cagctataat caagaaaata gtggataagt
     2101 cagcggccaa cataattctc cgctgacttt tctttagttt gaaactggaa aaaaacatcg
     2161 tcaaaataaa caccacaact ggtaaaataa taattattgc tgttgaatta gttaaccaat
     2221 caaacatcgc tttctccttc caacccttta attagatgat ataacgcatg aagcgtagga
     2281 agtgactccc ctttttctaa aattggcagc acgattccat caatttctgt cattcgatta
     2341 tccattcggt caagagccat cgaagaaaaa ttagtagctg tcacttggca gattacttcc
     2401 actttttcta aagcattttc tactggcaaa accgtttgta tttcttttac aatcgtcttt
     2461 aataactcgt gccattcttt attttcaagg agctttccat tttggacttg aagaacagct
     2521 gtgagcggat taattactgc attaataaat aatttttcat ttataatgtc taagtaacta
     2581 gcatgttttt caactggaaa atctggattt gagtctaatg tttttgttac cgcctcactt
     2641 agttcgcctt gataaatact atactttgtt cggccatgac cacgccaaat gactgttgta
     2701 tcatcttccc gccccgcccc gtgttcgcta atacctagca aaatagttcg tttattaccg
     2761 agtagcggca tgctatctaa atgcgccgct ccattttgga tgaatagtaa cggcactcgt
     2821 tcaggtatcg actgtagcag tggcaaaatg ctttttagtg agtattgttt aactgcgata
     2881 attaataatt gttgttctga taacttttta atatctgtta ttactgtggc ttgtatatgt
     2941 atatttttta attcggaatt atcttttaaa gaaagacctt tttgatttaa taaatcgctt
     3001 tgttcttttc tccgcgtaaa aagagtgagc tcggatgtat cggcaaaatt tgctgcgtat
     3061 aaaagcccca tcgctcctgc tccaataatt cctactttta gttggttcgc catttagttc
     3121 agctccatat tgattaatgc ttttatttta tcagaagtag cattcttttg cacttttgtg
     3181 cgcaaacaaa aacctcgaaa gacccatggc gtctttcgag gttcgtcttc aacaagtgaa
     3241 acgtcacttg tttttagcaa tattagctgt ttgctacatc tttgccatca tattgtccac
     3301 attctgggca tacgtgatgg gaaagtctgt attcgccgca attcgagcat tcgttcatgc
     3361 ccggaagttg aagtttaacg tgtgtacgac gcttacgctt tttggctttt gaagttcttc
     3421 taaaaggtac tgccatttcc ttacacctcc ttgacgataa ctaagtactt gtatcgttaa
     3481 tctaagaaaa ataaattcct taatatattc cagcttcacg gggagtttag tcttcttttt
     3541 tctcatcgaa aaaattggct aatcccgcaa gacgaggatc cacttttggt tcttttgcta
     3601 tttgttctag taggttacct tcttctgttt tcatttccca ttcattgcct cgtggaaggt
     3661 tactcatttc gagtgcgtct tcactgaaaa cttgcatcgg aatttcgact agtaaaagtt
     3721 cttctactac aggggttaaa tcgaccatat cctgttccat cacatgccaa gattcatcta
     3781 gaacttgttc tttggatttc acaaaggttt ccgtcgcatg cacttcataa ggataaataa
     3841 catcctcaag tgtacgagca catggaagtg tccaatcgcc tttcatagtc aggttagcgg
     3901 taacttcttc tgggtgtaca attagttccc cagttacttg tacggggctt gcatcacgaa
     3961 cgtctatatt gttctcttga aagaactttt ttaggtcagc tttttcatta atcgtgaagt
     4021 tgctgtcacg atattttttt aattgactga tagaccattt catcctacat cactccaagc
     4081 gcaacacaaa atattatagc ttttttaaag gcttttgtca atgctttttc ggggagtaaa
     4141 accgctgcct tcattttatg ctaaaataga ttatctaaag gagggaaccg aaatgaaagc
     4201 aactggaatt gtggtggaat ataacccttt tcataatggg cataaactac atctaaataa
     4261 agcgcgcgag ttaactcaag cagatgtggt gattgcggta atgagtggct cgtttgtaca
     4321 acgaggcgaa ccagcgattt tgccaaaatg ggaacgtact aggatggctc tcgctgctgg
     4381 cgttgacatg gtggttgaac tccctgtctc attcgcgaca caacatgcga cgattttcgc
     4441 agaagaagca gttcgtattt tagatgccat tcatgtggat acgctgtttt ttggcagtga
     4501 acatggagtt gcggaagatt ttacattagc tgcgaaaaaa gtagtcgaaa acgaagcccg
     4561 ttttgatgaa gcgattcagc tggcgttagt tgataagaaa acttcttatg ctagagctta
     4621 tacagaagct tttaaaaagt tgttcggcca gaacttgctg gatatcacga aacctaataa
     4681 cattctcggt ttccactacg cccttgctgc ccagaaacaa aacccgtcca tttctcttca
     4741 aaccattcct cgtgaacatg caggatacca tgacgaggaa gcaaaccatg accaaatcgc
     4801 aagcgcgacc gcgattcgaa aattaatact tgctgggaag ttagaagaag ctagccacta
     4861 tctccctgct tcttctatag ctattttacg caattatgag gggccatttt tatcgtggac
     4921 agattattgg tcattcctgc aatatcggtt aattcaagca ggctcagaag aactggaagg
     4981 aattcgcggt gttagtgaag gaattcaaaa ccggatgcag caagcagcga ctaaagcgca
     5041 aaacttctct gattttatag aattaaccaa aacaaagcga tacagtaatg cgcgattaca
     5101 acgaacggct ttacaaattt tattaaatgc gaggagtcaa actagctccc cttacatccg
     5161 aatactcggc atgaataaaa cggggcaaca atatctatcg cttcataaga aaaatatttc
     5221 tctccctatt atcacgacgg tttccaaagc accagctggg cttttagaag aagaattacg
     5281 tgcgacaaac atttatacgc tggcaaaagg actggaaaat tatcaggctg gcgactttca
     5341 tattccacca attttaacct tgtaatcttt acaaggtttt tggttgactt ttatggggct
     5401 attttgctaa gatgtttgtc cgactcaaaa aacaggaggt atgtgtatgg tacaagaata
     5461 tattcgatta agaggagcgc gtgaaaacaa tctccaaaat atttccctag atatccccaa
     5521 acgaaaaatc actattttta ctggtgtatc tggttccggg aaatcttcta ttgtatttga
     5581 aactattgcc acggaatcgc aaagacagtt aaacgaaaca tacagcgcct atcttcgtaa
     5641 tttccttccg aagtatacgc agccggacgc agattcaatt gaaaacctct ccacctctgt
     5701 tattattgat caaaaacgac ttggcggtaa ttcccgctcc acccttggta ccatcacgga
     5761 tattaattcg attttgcgat tacttttctc gcgtgtcggc aagcctagta tcgggacagc
     5821 aaatttattt tcttttaacg accctgctgg tatgtgccct gattgccatg gtgttggaca
     5881 aaaagtttcg gttgatttag tcaaattact tgatccaaat aaatcgctca aagaaggcgc
     5941 catcttattt ccgacgtttt cggtagattc atggtactgg aattcctatg cttattccgg
     6001 cttttttgat gtgaataaaa aaataaaaga ttatactgac gaagaatacg atatgttgtt
     6061 acatgggaaa gatattaaag ttttcctaga aacacccatg ggaagcatga acgctacata
     6121 tgaagggttg attccaaaat tcaatcgttt gtatattcaa aaagaaggcg aaatgtccgc
     6181 ctctactaaa aaacgtgtcg ataaattcac ccatattgcg ccttgtacaa cttgcgaagg
     6241 cacgagactc tccgcgcaag cattatcttg tacaataaat ggtgcaaata tcgccgactt
     6301 cacagcgatg caattagatg aattaaaagc aacgattgcg agtattgatg accctatcgc
     6361 tgctccaatg gtcaaaagtg tcacagagcg attgcaacat ttgattgata ttggtcttgg
     6421 ttatatgaca cttgaccgcc aaactgcttc tctttctggt ggtgaatcgc aacgtgtcaa
     6481 aatgattcgt catttgaata gcagcttgac tgatctgctt tatattttcg atgaaccaag
     6541 tatcggtctt catccacgag atgttcatcg actcaatgaa ttactcgtga aattgcgcga
     6601 caaaggaaat acgattctcg tggtggaaca tgacccagat gtgatcaaaa tcgccgacca
     6661 tattgtcgat gtcggtccgc acgcaggaaa acatggcggt gagattcagt ttgtcggaag
     6721 ttacaccgat ttgctgaaat cagacacact aactggcaag ttcctcaatc gccatttacc
     6781 aattaatagc aaaccgagac aaccaaaagg ttttttaaca actgaaaaaa gtagtcgctt
     6841 taacctaaaa gatattcagg ccaacattcc aaaagaaatt cttactgtag taactggcgt
     6901 ggctggttcg ggtaagagta ccttgattca ttctgttttc ctaaaagaat atccagatgc
     6961 gatagtgatc gaccaatcag ccgctcatgc caatattcgc tctaatcctg ccacctatac
     7021 tgggataatg gacccgattc gaaaagcatt tggaaaagaa aatgatgtca gtccatcact
     7081 ctttagttac aattccaaag gcgcctgcga aaactgtaaa ggacttggtt tcacaactat
     7141 ggatttagct tttatggatt cgattcgcac accttgcgaa gtatgtcacg gcaagcgatt
     7201 ccaagattct gttttgcaat ataagctaaa tggtaaatcc attagcgatg tgttagaact
     7261 aactgtctca gaagcactcg atttctttac ggataaaaaa atcttgaaga aaattgaggc
     7321 aatggaagag gttggaattg gttatgtcac gcttggccaa gcacttagca ccttatcagg
     7381 cggtgagtgc caacgtttaa aactcgccaa tgagcttcat aaaaaagggt cgatttatat
     7441 tatggatgaa ccgacgactg gtcttcatat gtcagatatc gaacatattt tgacgattat
     7501 ccactcactt gtaaataaag gaaataccgt tattgtaatt gaacataatg tcgatattat
     7561 tcgtaacgca gactggatta tcgaccttgg cccagaaggc ggaagtgctg gcggacaaat
     7621 tatcttcgaa ggcgctcccc ttgatttact tgaaaataaa caatccttaa ctgccaaata
     7681 tctttaataa aaaaagccgt tttgtctata gcagacaaaa cggctttttt tattgtagtt
     7741 tttctaaata atccacagca tcttggaaag ttttaactgg aacgattttc attttggagt
     7801 caatgtcttt cgctgtttta actgctgtat cgtaattact ttcgatactt gggtcgcttt
     7861 ttttcatttc atcggtaatt ggatcattgg gagcaaagaa aaccttcgca ccgcttttat
     7921 ctgcggcaac gaccttttga tcaattccgc cgattctacc aacagttccg tcagggtcaa
     7981 tcgtaccagt tccggcgatt tttttgccat ctgtaagatc atttttttgg aaacggctgt
     8041 aaatttctaa actgaacatt aaaccggcag aaggtccacc gattttttct gagtcgattt
     8101 tcacagttgg atctgcggtg attttttcat catccacaag cgtgataccg attcctggag
     8161 tgcctttttt atcaattgct gttaatttga tgttggcttg ctcatttttg tcgccgtgtt
     8221 tgtagtttat tttgactgtg tctcccactt ttttactgtg aatataatca ataaattctt
     8281 ggcttgattt aaacgcattc ccatcaattt ctgtgattag gtcgccagcg tgaaggacat
     8341 cggctgctgg aacgtcatct tttacgctta atacgtatac gccatcataa gtgactttga
     8401 cttcttgacc ggctgcttta taagccactt gaatggcatt atttttggat tcgttcatca
     8461 tttgcatttg gcgaacgtta tattcttcgt cgctttcatt ctcgtatttg atatcgctat
     8521 ctttttctaa ctcatgatat ggcaaaaatt tagcggtcat atatgtataa atattcgctt
     8581 ttcccattgc aatcgtcact agactgagcg aaccgtcttt tttatttgga tggtcatcaa
     8641 ctgtaacgag tggagcaagt tcttccgtac caccaggttt tgaaatataa tacggaactg
     8701 gaataaaaaa gcccgctata ataataatta acagcactat cgccgttatt tttttccact
     8761 ctttacgcat tttctgtcca tctcccactt acttaaattt tgcttgtact tgttcgttca
     8821 ctatttcagg aacaagttcg ctgatatcac cttgatactg cgccacttct tttaccatac
     8881 tggaacttaa aaaagaatat ttcgtattag tcatgacaaa aaaagtttcg atttccgcat
     8941 tgagcgttcg gttcatcgaa gcaatttgca tctcgtattc aaaatcactc accgctcgaa
     9001 gccctctgac aattgcagta gccccgcgcg tagcagcata atcaacagtc aatccgctcg
     9061 cactttccac ttgaacattt ggcaaatgag cggttacttg tctaatcatt tccatccgct
     9121 cttctatcgt gaaaagtggt tttttggatg agttgtttaa aacggaaaca tacagcacat
     9181 caaaaatctt cgctgcccgt tcaataatgt ctaagtgccc attcgtaatc ggatcaaatg
     9241 tcccgggaat aacggcaatt ttgtcaccca tttctacgcc tcctgaaatt caaatataga
     9301 taaaacagta attccataag aaactgattt gattttctcg aatttaccga ttgtatctgg
     9361 catgattgct tctttgtcat gctcgcaaat aattcttcca ttttcgttaa ctaattctaa
     9421 tttttctaaa gttactagta atttttctaa ttgttgcttt ttatatggtg gatctaagaa
     9481 aacaaggtcg aatttccact catttttatg gagtaatttg agtgctcgtt cggcatcatt
     9541 tcggtatact tccgcacgct ctgtaaaatg gcatccttct aagttttggc ggattgtttt
     9601 aattgcgagc gctgcttggt caataaaaac agctcgttcg gcacctctac tcaacgcttc
     9661 gattccaagc ccaccactgc cagcaaataa atcaagcacc atatccccgt caaaaaaggg
     9721 accaataatc gaaaataagg attcttttac tttatctgtt gttggtctcg tattgtttcc
     9781 tggaacagct tttagagcgt gtccttttcg ttctcctgca atgactctca tgtttttgca
     9841 caacctttac ttcaatgtct tttttacttt atcacaaata gaagcaaaaa aacagcaaga
     9901 ctagttgaga tagtcttgcc gttttggtta gatactgatt tgcacatctt cgtttttgtg
     9961 ttcgtacatc atttcttttt tggattcgta ttctgttttt aagaacggac ggaaagacat
    10021 ttccacgcgt ttcacataat gaaaacgaga aactttgtta gagatatctt ctacttcagc
    10081 catatcacaa tataataccg catatttcaa cttgcgcgat acataatgca catttccaaa
    10141 tcgcttcaaa gatctaactt gtttaagatg attcatccaa acgacgatag cttgtctatc
    10201 attttccatt gtttaagccc cttcttttta ggataagctt tacgctgaac aaccgcagcc
    10261 tcccccgctg ccacatccac ctgtagaaca agcagatttt gtttcaaaaa acggattacc
    10321 agttggtact ttgatattct ctgaaactgc acttgcgaga agcaggctga tttcgtccaa
    10381 gagagattgt aaatccatct ctgcccggcg aaaagctgcc acattttgat ccatatcgac
    10441 ttcgcgttta taagcacgag tctttctggt tacttcttta tagtcaggat gataccggcc
    10501 gaaccgctgc acttcctcgt attgttcttt tattcgtatg aattgacgaa tatttttttg
    10561 tgaagtagcg tcatttagca acgcttcctt agcaagttta taattttgcg cttcctcgga
    10621 gtttagaatc atgctagcaa gctcatctga taaatcgagt agcgccatat tttccattgt
    10681 agcgagcaat ctagccacct ccatataact tactttttta ttataccata gaactattat
    10741 ttaataataa aattttgcgt atagtatttt cgatatgttc ccgcacccat ataggtatat
    10801 gaaccatcta gtagattttc tctatgtcct ttagagttga gccaaccttc tactgctgct
    10861 gcactatcga catagttata ggcgatattt tcaccagctt tagtatattt gacgtcccct
    10921 ttactaagtc gtttgcttag atctccttgt gtcggtgaag tatggtcaaa ataatcattt
    10981 ttcttcatat caacactatg tccatatgca actttcgcaa cagactcgtc ccaagctact
    11041 tcttctattc cgtatcgatc acgaataaca ttagtgattt ctagcacttg tttactagaa
    11101 gcatcatcaa ttgcattcca atctgctggc gtcaactttt cttcataaat ttcaccttgg
    11161 taagataatt cataggggcg cattttgacg aaggataatt tattgaggta acgaacacta
    11221 atcagttttg acttaaattt atcgaaattc agttgcgcat aaacgccact tccaatgtta
    11281 acaatcggac gggcatttaa gtcttcctca gaaagttcga atttataata gctgtcttta
    11341 tagttgaagg atatttccga ttgcaaattg gcatcggtaa atactttttc ggtggacata
    11401 ccaatcgtat atggcatgac atttaaatct tgtcctagcg cataaatggt ttgcacgata
    11461 ttttttgtta cacctacttg catatagctt gttcctggtt gactataaat gtaattatcg
    11521 taaccgtatg ctgttttgtc tacacgcacc gggtccccaa actctttctt taattcactt
    11581 acgtttttat taataaatct tgccaagctg gaactatctt gcacttgttt cggattttca
    11641 ttcgttgttt ttttattatc aggaaaatta gactttgttg ccgtatcttc ggctgtattt
    11701 ttctctactg atttactaaa aaaaagatct gtgttgtatc caatgaacag gcaaatgatt
    11761 aatagcacag ctactcgcat tataaacttc acattttgcc ctcctcggca gtattttgtt
    11821 ttcttgatgt aactttcatt ttaccaatac tattatcatt tgaaaagctt taaaaatcat
    11881 aaaaaaaaca attacaagga aacgcgtatt gcacgcttct tcgtaattgt tttttatttt
    11941 tataagaaaa tcgaaataac taccattgct acgaataaaa ttgtcatgta atttaatgag
    12001 taaacgaaca tccatttagc ccatttaata ctatcttcca ttttaaagcc gtaaatacta
    12061 agtgctaacc aaccgatatt cagtaacgtt gctaaaacaa cataaacgat gcctagttca
    12121 aacataaaga acggtaggat agttaataaa atcacccaga aaaacatgct tttctttgta
    12181 cgttcaatgc cttttactac tggtaacatt ggaattccag cagctgcgta ttcctctttc
    12241 cgtttaatcg caatcgcata aaaatgcggc ggttgccaac aaaacattac gagaaacagc
    12301 atgattggta cgatgctaaa tgatggttcg actgcaaacc aaccaatcag cggcgggaca
    12361 gcgcctgaaa aactaccaat tacagtatta ctaactagtt ttctttttgc atatagcgaa
    12421 taaacgacta catacaaaaa gaccccgata acgccaagaa ctcctgcttg ccaagttgtc
    12481 ataaataaca taattgtacc gacaacacct agcacaagcg caaccattag tgcacgctta
    12541 ccagaaattt tcccggtcat tgttggtctg ttttttgttc tttccataat tccgtcaata
    12601 tcacggtcga tgacattgtt aaaagcgccc gaagcagcta cgataagtgc tgaaccgacg
    12661 atagtaaaaa atatcacgtc tacattttga ataaaagaaa ttccatttaa ctgaaaggct
    12721 aaccacattc ctgtaaaagc agtaatcgta ttggaattca cgataccaat tttcacaagc
    12781 tcggtaaaat cacggacagt aaatctactc gccgataact ccccagtctt ttctatctga
    12841 ttcacttttt ctccccctaa cacttgctga tataaaccag tgattgcgaa ctgatagata
    12901 tcttataccc ttattatgtg aaaaatacgc cccttttgtc aataaatcgg ctttagtctt
    12961 gtacgcttta cttcttcaaa taaacacgct acaattagtt tgatgtgtac tcatgaactt
    13021 atacatagac acaaatttta gtaaaatctc acacgcatct aaaggagaga ttggtagata
    13081 atgaaaaaat tcttgaaagt ttggtccgta ctaacgatta tttgtatgac ggtcgttgtg
    13141 tttggcggag cgctcgtaac gaaaactggt tcagctgatg gctgcggtaa tagttggcct
    13201 ctatgtaatg ggcagttagt tcgtttaaca gatgttactc cggaaaaatt aattgaattc
    13261 atgcaccgaa tgacgacggg aatcagttcg atttttgtta ttgttttagc aatttgtgct
    13321 tggatttata tgaaaaatcg tcgcgaaaca aaaccacttg cgattattgc ggttctgttt
    13381 ctaattattc aagcgttaat gggaatggcg gctgttgttt ggggacaaaa tccgtatatc
    13441 atggcgctac actttggaat ttcgatcatt tgttatgctt cgattgtatt gcttgccttg
    13501 atgatttttg aggtagaccg gaaattcgat gccagaaacc tcgtgatggg gacgaaatta
    13561 cgtattaata tttatgcact aacgatttac acgtacttag ccgtttatac tggtgcactt
    13621 gtacgccacg aaaaagcaag tatggccgtt ccggtttggc cttttgaaaa tgggcacttt
    13681 attatgccta cttcagtaca agattatgtg cagtatttcc accggttagc cgcatttatt
    13741 ttaattgttt ggttgctgta tgtaacttgg cttgtgttcc gggattacag aagataccgc
    13801 gtgcttactt ttagcatggt gttgtcgctt gtgtttattg cacttcaagc cgttactggg
    13861 gcgctgtctg tttatacagg agtgaacttg tatatcgcgc ttgcccatag cttgattatt
    13921 acgatgttgt tcgcgctact ttgctactta tgcttactgg catcaagaag taaaagcaat
    13981 cgactacgaa taaaataacg aacacggctg gcaacttttt gttgtcagct tttttatttg
    14041 tttacggctt ttgcgtcgtt ttatgctaaa ataagtgaga gtataagtca aacgaggtgg
    14101 ataacttgga taaaacaaag agaaaaatga tttatgagac ttttatgctt attctcatag
    14161 tgctttccct tgccctatta ccgtacagaa acagctttac atttatttta aattggatta
    14221 tttgggtgat ttttacgcta gattatctgg ttcgacttta tcgtgctgat aataaatggc
    14281 attatgtaaa aacgcatccg tttcaactca ttgcaatcat tccattttac ggtggattta
    14341 gagcggctcg gattgttagt tttgtccatc tattaagtat tactgcgatg gggagacggt
    14401 atattgtacc gatttatagc tttttccgtt ctaatggttt aaatcgattt ttaatgattt
    14461 ttgtgttact tgtgattata attcctgttc cgatggtatt tatcgaacct gaaataaaca
    14521 attatcctga tgcgctttgg tgggcgattg tgactgcgac aacagttggg tacggtgata
    14581 tcgttccagt gactccgatt gggcggattt tggcatcgat tatgatgttg tttgggatag
    14641 cgtttatcgg gatgataact agtacgataa cgaacttttt ccgcgctaag aaagctacta
    14701 cttctagcac acaaagagca agcaagatta cccaattaat tgcagatacg ccagatttaa
    14761 ccaaagaaga aattgcggtc gtagagcaat ttttggcact acgaaaaaaa gaactggctg
    14821 atgaaaatat aaaaagtgat agcgaatgat gctatcactt ttttatttgt ttttcgactt
    14881 ggttacggta acgttcagat aaggcttcta ccgccaaaat gcgttctaag tcttcttttg
    14941 tcccattttt atgcaaaact ttatcgtggc aaaaggctac tgttacgccg tgtgattctt
    15001 ggtgaatttg tttgatctca tccgttgcat gtataatgcc aggagtaatc gttcggcata
    15061 ggtatccagt aagtccagtt ttgtgaattg ctttatagag attggggatt ccattgaact
    15121 tttcaattgt actacatgga tttcgggctt ccgttatttg gataacggtt tcgccaatct
    15181 ggaatttatc gccaatttga acagaacttt ccaacatatt cgtagtgatg agattttcac
    15241 caaaagcagt tacttgtagc tcttcgccaa acattgctgc ccatttcgcg taatgttcgt
    15301 atggataaat acaaaccgta cgatccggac caccgtgata cttcaaatta tgcggtgcgt
    15361 cattttcaaa accggtagtg gttagactgg cggattgtac aagctttttt tcgattcccg
    15421 tcatcatccg tttgttattt gaaaggttaa gttctttcgg cttacctaca gctaaatgca
    15481 tgattttccg ttccatctgc ttactccttt gaagttattt ttttcggctt aaaatagcaa
    15541 gaatgcccgt gataagcgca ataacgctga tagctactgc ggtccataat aaaatcgtgt
    15601 tatctccagt actgcttgta tcccctgctg tgttctccgc tcccgcaact acttctccgt
    15661 gcgagccagt tgcggatttg gaagactctt tgacaatttt tgtggtagca tgtggtgtct
    15721 cggaatcttc tgcgccaacc cattcaacga tggagccatc ttcataatat tgataggcat
    15781 tccaagcaat ttcgccttct tcacttggat ttttagcgat aaaactaaag cgctggaatt
    15841 ggcctttttc aattccgttg ccttctgttt gccatgttac tgtgccattt ttcttatcta
    15901 ctgtcgttgt ccagcctggc actggttcat aagattcgaa agatacgcct ttttctactt
    15961 ttaaaacgat ttttttagag gcgacatctt tttctgacgg tactttcatt gtgtaggttt
    16021 cccaggagtc tacggtcgat tcgctcggta atacagaaac atgtgcgctc gcttgaaacg
    16081 gaatgataaa gacagctaat aaaacgacga tggagctgat aatttttttc attatttttc
    16141 ccctttactg tgtaatattg gttgtaaatg tttgatttat atctgtgaaa tcttttgtta
    16201 aaccatgaac cgtaatttcc cacttgccgg tttgattaat atatagccct tccgcaaagt
    16261 attgcgtatc atttgcaagt ttggcttgga aagttgattt ttcatctgtt ttagtagatt
    16321 ttgttgtaat cgtcacttgt tcaaaatctg ttttggcaga accatctgct gaagtaaaag
    16381 tgatgataaa ctggttttgt ccaacggtcg ctggttccac tcgtaaattg atttttgctt
    16441 tttcgccttc tgctgcaatt gtttcatcaa atgctttcgg agcaggcggt ggcggtgttt
    16501 gtacgttggt taacacactt gcgacaacaa ggataatcgt cccaatgata agttccatca
    16561 aaatggtttt aaatggcaat cgttggtttt tgagtttgat ataaatgtaa tgacctagcc
    16621 ctagtagtgc cattagtaaa aataaaccaa ttttgaaaag aagtatttta ccgtaattgg
    16681 ttgtaaataa attggccatt tgaccgaggt tcatcactgc cattaatagg ccgctgacta
    16741 agatggaggc gactgcaatg attgctacaa tcgcaaagcg gctccaaact gcgcgcgctt
    16801 tcccagtctg aggtaatacg aataaaagca ctaaaatccc gccaacccaa acgcttgcag
    16861 caatcatatg gagcatatca gcgctgatac ttactatttt atcggcactg gcagcggcgt
    16921 gtccattctg agccttcgca aaaatcaaat atccgattaa tgcactctcg gtcaaaagcg
    16981 cgaaccagct ccattgtttc tttttaaaga acatcatgat agtaaaaatg gcaagtagaa
    17041 gccatacgat aagttcactg atccaaatat aacctgtttt cgtagtcaag aacgcaacta
    17101 acttacttgg tccaaaactt tcactgatag aaacgcccgt tgtgatactt gtttgtatga
    17161 aaagttgcat gaagagagcc acacctagaa gtgctagcgc tacccaagtt acttttttca
    17221 aacgtccaga aattttttct gttaactgtt cttttcgtgg ataaagtcct aacccaaaaa
    17281 gaagtacgcc gataaacagc gaaaaaccta tgtataaaac ggctttttga atcgaactaa
    17341 tttgcaagtc cgctccactt gagggaactt ccgctgcttg gaacgtcgct ttcgtatccc
    17401 ctaacttaaa agaaatgatc cccgtaaccg catgtccatc cgctgacaca acccgccatg
    17461 aaacagaata gacatcggct tttaaatcag ccggtagaga tgcttcaacc atatgattat
    17521 tctttttaga aacagtggtt ttcccggttt ccacttgttt cccactggaa tctttgactt
    17581 ctattaaagg gaaatccgct tcaatttctt cattaaaaac aagcgttact ttttcgggtg
    17641 cggtttgaat atgagattga tcggccggat tcgaattttc caaataagca tgtgcagaaa
    17701 catgctgaac tggcacgatt aatagatata gtataatgag aaaaaaactg acccttttca
    17761 ataatttcat ttgctactcc tttttcgaac gaacggtttt actcttttta acttatcatg
    17821 tgcaacaatt gaatggaaat aatcggctca tttcctattg caaatgatgc tacgattatg
    17881 gcatagtgat agaaaaggag gttttaccta tgcttcgtta tatcgaattg tttttcatgt
    17941 ttgcttttgt tacactcatc acgatgtgga ttcaagcact tctagcaaaa tggaaaccta
    18001 ctattcttcg ttctttctgg cttcgtacgc tcacatttat tattattggc tacgcattaa
    18061 tggcgccaac gctatacata ggcagtttat tgctaaaata agttcagttg ctttcacatc
    18121 gcagttagat tgtttatact gggaagtggg aggtgaattt tcatgaaaaa aatgttagta
    18181 gaatttagag acttcgcgtt aaaagggaat gttctagacc ttgctgtagc ggtagttatc
    18241 ggggctgctt tcggtaaaat tgtttcatct ttagtagata acatcattat gccacttgtc
    18301 ggtgtactac ttggtggtct tgattttaca gatttaagtt tcaaagttgg taaatccgtt
    18361 attcagtacg gtgctttcat ccagtccatc gttgactttg tcatcatcgc ttttgccatt
    18421 tttattttcg tcaaggtact tactagtttt attaagaaaa aagagcaaac ggtggaagaa
    18481 acgccagtac ctccaactga ggaatactta aaagaaattc gtgatttatt gaaagaacaa
    18541 cagaaataac tgaaaaaatc cttcttttgt ggaaggattt tttatttaca ttcgcgctta
    18601 taaattatgt tttctaaagc taaaaagtta ggctatctat ctcccttaaa ttcaggaaaa
    18661 aaatagccta actaaattct atttcaccgt tgctgttttt ttaattgtat cgctaaaaac
    18721 atttctactg ctgcgacaac taaaaagata atttgtaaaa taaatacata gccgataatc
    18781 agtaactgta caatcatcca aactgcgagc acggccgctg ctgcgaacat gacttctttc
    18841 gttcgtggta attttttcag caaataaatg agtgctgcta aatggaataa tccaacaaat
    18901 acgaataaaa atatgcctgg tactaaataa tccacgaacg gtgaaccatc aagtaatcca
    18961 gttgaaagag atagtaaacc accacttggc atgaaaacca tggataatcc accataaatt
    19021 gctcctattg ctgtaaaacc aactattaca atactactta tacgtgtcca gttcatggcg
    19081 ttctcctagt cgtttttcta gtagtatacc acgaaaactt tcattctgcc gtttttcttc
    19141 gttttatttt tttgattaaa tcgatcaata cgaaaaccgc aataccgcat gcgacaactg
    19201 tagtgagata ccaagctgga ccggattctg cgcgtactcc tagccaataa gtcactgttt
    19261 tcgggttaaa aaatgcaaag caaattgcac aaaatgcaat aattcgacca ataatggaat
    19321 tttctctcat agcaagtgca tctccttttc ttttattata acaaggaata agaaatgata
    19381 acttagcttt tcggtcccaa agttgttttt catctgacaa gttttggttt ttttacacaa
    19441 aaaaactacg acaagagaat ttcttgtcat agcctcacag ttatttatta acaatgttta
    19501 gttgttgctc attaacgagt ggataaatag ctagttcttt gctctctaaa tcctcttggt
    19561 gcatatccac accagtaatt tgactgtttc cgtatgttct ataataataa attcctttat
    19621 cgatattgca acatgaggaa taaatggtgt gctcgtattt ttccccacca acatcacaca
    19681 gacctttttg ttgttccacc gagcctaaaa tatggaaaaa ttggccaatg ctttctgatt
    19741 cagaatcacc tgaaacagaa ttcaatttgg taaaagttgc tttcacaaaa cgagacatag
    19801 aagataaatc gccaggtaag ccgattccgc ccatcccacg actataagca tccaaatcaa
    19861 tctcgttgga aaaattattt tctggagttt cactcgaaag aacgcgataa ttgtttaaat
    19921 taaatagttg gtaatcaaat gttggattat ttgttaacac gccaacagga ttatcataaa
    19981 tgtgaagtcc atctttcaca cattccacta caatagattc gttttgatca gccatcaacc
    20041 aatgtaaagg agatagcggc aaattttcac taaagctaat attcacgaga ttgattctct
    20101 gaagtaatct tcttgcttct tttacagtag cgcattgacc aagaatccac ggaataaatt
    20161 caaatggcgt tacattgtcc ttaccttctg caaaatcctt gtaatccgca tttcctgaga
    20221 aattgagtcc tgccatacta aggccttttt cattggtagc atcgtaatac aacgggtagt
    20281 tttccatcac agcagcaata ccaataagtg cataatgctt ctctatatcc tctaccttgc
    20341 gaaaatggaa cgggtaattt ttcggcgtaa caaccacaac ctctttgtaa gaaagttcat
    20401 aatcgaaatt ccttccaaaa tagtgatcct tcgttgtata agttattgac gtacacatta
    20461 aaaatccctc ctcaaatttt tcaccataca tgtataccag taccctcgga cttttgtgta
    20521 aaacataatt tgtggttttt ttcacaaaaa atggccaatt tattacctca tacaagatga
    20581 tttggctctg ataaaaattt tttaaagtat actcctctat taacttcttg aaaatattct
    20641 gctataaaat cataataaaa aagatccctg gaaaatccag agatctttta aaaatgtcag
    20701 ctgatgttaa ccttacatca tgccgcccat gccacccatt cccatatcag gaacagctgc
    20761 tgggccgttt tcgtctggtt tgtctgctac gactgcttct gtagttaata gaagtgcagc
    20821 aacagatgat gcgttttgaa gtgcggaacg tgttactttt gttggatcca caataccagc
    20881 gtcaatcatg tttacccatt cgccattagc tgcgttgaaa ccaacgccaa ctgcttcgtg
    20941 tttcaagcgt tcaacgataa ccgaaccttc aagtccagcg ttatgcgcga tttggcgaac
    21001 tggttcttct agggaacgaa gcacgatgtt gataccagtt tctacgtcac cttctgcttc
    21061 tagtgctgct actttattgt aaatacttac aagagcagta ccaccaccag ctacgatacc
    21121 ttcttctaca gctgcgcgag tagagttaag cgcatcttca atacgtaatt tacgttcttt
    21181 tagctctgtt tcagttgcag cgccgacttt gacaacagct accccacctg caagttttgc
    21241 caaacgttct tgtaattttt ctctatcaaa ttcagaagta gtttcttcca tttgcgcacg
    21301 gatttggttt acgcgagcgc taatttgtgt ggaatcgcct gctccttcta cgattgttgt
    21361 atcatctttt gttacaacta ctttgttcgc tgttccaagt tgatcaactg ttgctgtttt
    21421 tagttctaag cctaggtctt ctgtgatgac ttgtccgcct gttaaaatag caatatcttc
    21481 tagcattgct ttacgacgat caccaaaacc aggagctttc acggctacta cgttgaatgt
    21541 tccgcgaagt ttgtttagta caagagttgc ttgagcttcc ccttcaacat cttccgcaat
    21601 gattaacatt ggacgacctt gttgaacaac ttgttctaaa actggtaaga tttcttggat
    21661 gttgttgatt tttttgtctg taattaaaat atatggtttt tcaagaactg cttccatttt
    21721 gtcggaatca gttaccatgt atgggctagt gtagccacgg tcaaattgca taccttctac
    21781 tacatctaat tctgttgcaa agcctttgga ttcttcaata gtgataacgc cgtcgttacc
    21841 aacacgttcc attgcttctg cgattaattt accaacttct tcatcaccag aagaaatagc
    21901 agcaacttga gcgatagact ctttgctttc aattggttta gagatagctt ttaattcttc
    21961 gatagctgtt gctacggctt tttcgatacc gcggcgaacg cctactggat ttgctccagc
    22021 tgttacgttt ttcaagcctt cttgaatcat tgcttgcgct aaaacggtag ctgttgtagt
    22081 tccgtcccca gcaacatcat tggttttaga agcaacttca gatacaagtt ttgctcccat
    22141 attttcaaat gggtcttcta attcgatttc ttttgcaatc gttaccccat catttgtaat
    22201 taacggagaa ccgaattttt tttctaaaac aacattacga ccttttgggc caagtgttac
    22261 ttttactgcg tttgctaatt ggtcgacacc acgtaacatg gcacgacgag catcttcact
    22321 aaatttaata tcttttgcca ttttatattt ccctccgatt atttcttttt ttaattattt
    22381 agtaattgct aaaatgtcac tttcacgtaa aatcagatag tcagttcctt catacgtcac
    22441 ttctgttcca gagtattttg cgaagataac cgtgtcacct tctgcaactt caagtggttc
    22501 ttttgtgccg ttatctagca cacgacctga accgactgca acaattttcc ctgattgcgg
    22561 tttttctttg gcagagtctg gtaatacaat cccactcgct gttttttcct ctgcttcaag
    22621 tacttcaatt acaacacgat ctcctaatgg ttttaacaat gtaaatgacc tcctctgata
    22681 taattacttt tttcatttta gcactcgaca cattagagtg ctaatacagt tattatgata
    22741 ccaaactgaa taaaaaatgc aagcaaaaac gtttaaaaaa atagaagaat tcttatttgc
    22801 ggtaaagctt cataacgagt acaataagaa gagctatttc cgcttatttg aagcaattta
    22861 gccaatgttt tttatagaaa ggatgcgtaa tttttggcta agcgttatat tacgattgtt
    22921 ttagttta
//
LOCUS       DASDXX010000025        22906 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.025, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000025 DASDXX010000000
VERSION     DASDXX010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22906
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.025"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..155
                     /locus_tag="U0280_000780"
     CDS             <1..155
                     /locus_tag="U0280_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270735.1"
                     /translation="KLNVFTRETICNGKDIEIANYNIELEAISEESFIDTAEKVEKIR
                     EFIENL"
     gene            174..608
                     /locus_tag="U0280_000781"
     CDS             174..608
                     /locus_tag="U0280_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270736.1"
                     /translation="MGQLFNLPQVEDINYIQTVRAVRKFFKDYLMLRVMAGSRKLPTM
                     TTTYKLTPPNFSNEFHSKVEDAAIHNVDNVHAAQEAIKKYDAILNQLEHIHRKILFEK
                     FIHNLQDITIMLDIPYEERQYKREKRKAVIELATTLGIEVLN"
     gene            972..1532
                     /locus_tag="U0280_000782"
     CDS             972..1532
                     /locus_tag="U0280_000782"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270737.1"
                     /translation="MQTIISLAILGIVAFIGYWAKDLPGIYKAITVENKRKFNELDIQ
                     RESFFRQLRGDDLANTFGEWVSAYTDMDEFVEKAPTILKDMQKKVIMYGSPKTVSILA
                     MLSQHTYIGSGEEDVGKGTRFDNYKLMLYIANLIASLKFDFTGYKIDPMDIVRVRITD
                     YKENETQFKENQQKIETEIQKLGYEL"
     gene            1629..1814
                     /locus_tag="U0280_000783"
     CDS             1629..1814
                     /locus_tag="U0280_000783"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270738.1"
                     /translation="MESNKTLVIWFKNGKTAIFEQVENLDAAEKAIVFDYYGKSTETK
                     RSAAFFLANIAGFAESV"
     gene            1856..2398
                     /locus_tag="U0280_000784"
     CDS             1856..2398
                     /locus_tag="U0280_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HEM2270739.1"
                     /translation="MKLTEKQKRFADEYIKCGNATEAARLAGYSSKTANRIATENLSK
                     PVIKGYIDKVLSELEEKRVMGYTEAMQLFTEIARGEMEEEVIVSNGDGFSVVTKSADI
                     NQRVSALKEIVKRHVAGGRDKLQEELIQAQIDKLRADTKQESNQGTTTIIMSNVDEMQ
                     AYLDKKAGGTDERDDTQTTS"
     gene            2367..3698
                     /locus_tag="U0280_000785"
     CDS             2367..3698
                     /locus_tag="U0280_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HEM2270740.1"
                     /translation="MNATIHKQLVDYQVINVTDMINPAFYDLWLSKHNHIIAKGGRSS
                     MKSSVISLKLVEKKMANPKSNMVCLRKVANTLYKSVYQQIKWALYEMGVADQFNFGKS
                     PMEIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEELAEFSGVTDIDVVEDTF
                     IREDLPDGQEVTTYMSFNPPRNPYEWVNEYVDTKRGDDDYLIHHTTYLDDEKGFLSKQ
                     IIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADDRLILIDFAIDT
                     GHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKAPSEYSKELRDFMTKVVGNYN
                     TNVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKVDMIDFVCDLLAQGRFYYLDIPE
                     NQIFIEEHRKYQWDVKTINTDKPEVIKEDDHTCDAFQYYVKDNLRKLGLKF"
     gene            3711..5210
                     /locus_tag="U0280_000786"
     CDS             3711..5210
                     /locus_tag="U0280_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015967141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM2270741.1"
                     /translation="MINQIIASVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMW
                     KRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINIDDKAA
                     EEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGKKNVKVSFATADCMYPLSND
                     SENVDECVISNSFHKNDKYYTLLEWLEWKGEKVEVYTVTTELYQSDDPNELGTKVSLA
                     LLFDDIEPVAPLSKFTRPTFTYIKPNIANNKNLTSPLGISIYANALDTLKTLDLMFDS
                     YYQEFKLGKKKVLVPSSFVKTAVNLDGSTTNYFDSTDEAFFLYQGDQDADGKSVKDIS
                     VEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHS
                     QLIEQGIKEMIVSILEVGKFIEAYSGDIVELDTITVDFDDSIAQDEDTTINRYTNAKN
                     QGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEMPNNDMTGIFGEEE"
     gene            5216..6355
                     /locus_tag="U0280_000787"
     CDS             5216..6355
                     /locus_tag="U0280_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor capsid protein"
                     /protein_id="HEM2270742.1"
                     /translation="MALTPRQLDLFVQPVVDVYTTLENELFTLIVRRLKTKKNISADN
                     VLAWQIEKLNQVHALDQQMIERISKASGVSAKKLFSIVKDAGYSDLTQVDNYFSKLAE
                     TGAVLPLVSDGQTIVDKVMRSYFKLAQSNYNRVNQTMLSQARQIYSDIIHETTQSVLA
                     GLKTHRQALAETVTKFAENGVPALVDKANKRWTPEAYVRTVTRTTVNSVYNSVEDERM
                     NEYGVDLVRISQHVGARPTCSIVQGKVICLLSVEETKTKYGNKYMSIYSPELRYGYGD
                     GIFGCNCRHHRFAFVEGINIAPGENELIDEEENKRVYMLSQQQRLMERDIRAAKRKLS
                     AAEELGDELTVKKAKQAVRTKQSKLRAFVKTHNLTRQYSREKVYA"
     gene            6434..7024
                     /locus_tag="U0280_000788"
     CDS             6434..7024
                     /locus_tag="U0280_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage scaffolding protein"
                     /protein_id="HEM2270743.1"
                     /translation="MERDFLKELGLEKETIDSIMVEHGKSIQNEKDKVTSAEAERDGL
                     KSQLAQRDDDIEALKTDSGTSKSLKAQLETLQDNYETLKKDSEAKLVETRKGAALDLA
                     LANAKARNPKAVKALLDNDKLELTDEGLKGLDEQLGALQESDAYLFAQESEAVPKFGF
                     SGNPTAPAGFSGSLKENLKSDSFNLTKFLTEKGESE"
     gene            7024..8025
                     /locus_tag="U0280_000789"
     CDS             7024..8025
                     /locus_tag="U0280_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coat protein"
                     /protein_id="HEM2270744.1"
                     /translation="MGNEITKLLDVVTPEVFNAYMDNFTSEKSAIIQSGIAVADPSVA
                     QNITAGGLLVNMPFWNDLDGEDETLGDGEKGLETGKITASADIAAVMYRGRGWSVNEL
                     AAVISGDDPLDALMGKIASWWMRREQTVLISVLNGLFAKNGALASSHLLSKPTSAISG
                     NLVLDAKQLLGDSSDRLSLMVMHSAVYTALQKQNLIAFIPNARGEVNIPTYLGYRVVV
                     DDGVPSTGTGAAKVYTSYLFATGSIGRNTGNPAKLTTFETARDASKGNDQVFTRRAFT
                     MHPYGVKFKNAVRDANEITPTNADLAKAGNWEKVYEDKQIGIVGIQHLVEELPASGA"
     gene            8044..8439
                     /locus_tag="U0280_000790"
     CDS             8044..8439
                     /locus_tag="U0280_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270745.1"
                     /translation="MPYTTLEFYTNEYAGEHLEQDEFDKLLKHAERKIDSVTFYRIRK
                     SGIESFSEFIQHQIQLATCNQIEYFKEAGGTSELAVSKPDNVSIGRTSISDSNFASTA
                     TSLNSGLIGSDVRSYLAHTGLLYNGVGVR"
     gene            8439..8801
                     /locus_tag="U0280_000791"
     CDS             8439..8801
                     /locus_tag="U0280_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2270746.1"
                     /translation="MKVVKPITNAPPLPLDWLIHNISYEAYKEEDRHNQVVYEKGIEI
                     EHVRVDFSKSNQIAGLSDSDRYDAVIFIDAVNSMNVPADFISRSRIFFSGKAYKIVKV
                     IPCYATSENVHHWEIEVV"
     gene            8801..9139
                     /locus_tag="U0280_000792"
     CDS             8801..9139
                     /locus_tag="U0280_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2270747.1"
                     /translation="MPIKVNIDLSKAKKNVKKAKEGAQFALINQAAADISLYVPFLEG
                     DLSNQYVIMNDKEIMWTSIYARRLYNGINFNFTLTHHPLAGPEWDQRAKVDKLESWIE
                     VAQKSVEEGL"
     gene            9139..9546
                     /locus_tag="U0280_000793"
     CDS             9139..9546
                     /locus_tag="U0280_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2270748.1"
                     /translation="MSLDFLDSVMDAIENNVDLKDMKLRTAILKPESIALLLTPNNDK
                     QGYQDGSYERSFSFNLNGSSKQEMKVLGVLNAIAAYFDKTEIESIQSLNNSFVLEDKE
                     TTSVPNLVSASDDGTFIYSASFKIKLYIESEEK"
     gene            9549..9986
                     /locus_tag="U0280_000794"
     CDS             9549..9986
                     /locus_tag="U0280_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2270749.1"
                     /translation="MARIKNAKTKYFVAEIVDGAGEPVWKRLSKWITNVSDDGSDNTE
                     EQGDYDGDGNEKTVVLGYSEAYTFEGTHDREDEAQNLIVAKRRTPENRGIMFKIEIPD
                     TETAIGKATVSEIKGSAGGGDATEFPAFACRIAYDETPKVTKP"
     gene            9916..10248
                     /locus_tag="U0280_000795"
     CDS             9916..10248
                     /locus_tag="U0280_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig domain-containing protein"
                     /protein_id="HEM2270750.1"
                     /translation="MLRSSQRSLAVSLMTKHQKLQNPEESPSSVEVDKATITLKVGET
                     STITASVLPVGASQEVTFTSSNPPKAKVNASGVVEGVAEGTANITVASKGSPSINKVV
                     QVTVEAAD"
     gene            10301..10723
                     /locus_tag="U0280_000796"
     CDS             10301..10723
                     /locus_tag="U0280_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HEM2270751.1"
                     /translation="MTQNNVINIQLEESYQEFQLGTELFRVGLGDEMRRKWIEADEKY
                     KKKLEKLNKYNIDNTDEMSSEEYFTLEEDVKEALTEAYAILLDDEKAFDKCYAQCKDI
                     LKMYQVYNQVAEIIVGSVEKQQNEIQKKYKAKMTKKAK"
     gene            10729..11334
                     /locus_tag="U0280_000797"
     CDS             10729..11334
                     /locus_tag="U0280_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriophage Gp15 family protein"
                     /protein_id="HEM2270752.1"
                     /translation="MLSLAFGVNDIYEYEGKEYKLDLAFDNVLRVIDLTEDNSLSDVF
                     RANLAIDVLFADDMPWPRSNEEDKYANIEEKSLVLIDIFTNYIVKENDDGLLYDIDGN
                     KMPSATNNNDEAEEIASYSLTQDADYIYASFLQDYNIDLLDSRGKMHWYKFRALLESL
                     RDDTTIKTIIGIRQAELPSGKGTEKERNELIKLKNRYKLKD"
     gene            11345..16711
                     /locus_tag="U0280_000798"
     CDS             11345..16711
                     /locus_tag="U0280_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HEM2270753.1"
                     /translation="MSDGSVVIEISLDDKKADKQLDAFEKDLEKAGTNAGAALDKAYR
                     EAVSDIASQSKRLKDTFVNAFKSMGSAGSNALKASLNFMRELPSNVQAALSKLASTVK
                     TGFVNAAKASITVIKELGTSIKNTAVNIKNGFFSIAKTVQSSIVSAVKVSINVIKSIP
                     SAIKSAGISIKSALVSSLQAAKSAAISFAQTTVKVIKSIPVAAKTAATAVKNSFVVAY
                     KAVVVAAYMSVKGTISAVKAIPSATKSAALAVSSAMKTAFSAVASAAKTTGTTVKSAL
                     KTGFSAVKSGAKAAGQAGISALKGLGNIAKSTGSLIKSGLVSGFNAAKAAAKGAGAGM
                     REALKNSVEKPAEQARFSLLKLAAALGLIAATKNVVGSAIGRVDTIDTATKSLTVLTG
                     SAKDAQLVMTDLTAAIDGTPIALDAVALGAKKMVAAGMKAANVKPVFTAIADAAYGVG
                     NGSESIDQMTDAISALQASGVAYADDINRLVDAGVPAWQILANSTGKSVGEMKKYVSE
                     GSLESTKAIAMLTKGIEEGTTGMAGNTAKMAGLAKTAGNTISGSFANMKTAAVKSLAN
                     IAENLKGPIIQALDVAKNAFKQFAAVTASPEFQKKLSDLIQKIKEFIPVLIEWAPLLA
                     KVAAGFVAFNIISSVFSKVAKLAGAIKSLTSSGSLLSVVVNTIKGSFVKLAGTLGSTT
                     AAFGVVAAAVGAVIAVIYGMYTAFKENTAGIKSFLSGMWEAVKNSFGKIIDVFKQIVS
                     ALKPVGSGFKDILKYIGVGAWIVLGFALAAVVDIIQVLARIVLVAIKALQGLYYAIKA
                     AFQALHWDLKGAKKSLEQSKDAFVEAGSAIKDAFNKDNYALTGTVEAFKQMGGEAEKT
                     AKKTETSGKKIKETLKLVETTAKQTETTVSKSNQAIDTMLNGGVDQYGKKLSEKTESF
                     LNAAKDLYEQYQEATKKSQDKYSVAMEKAQSLEGDKRKKAIADANKTLVDETTKNNST
                     LLTLQSDYSNMLKTNRWADGQELTAQQKKFLQQQTTDIQTELAKQNQLYVEANLLRLE
                     QGKSLNEKERNTSLEVQKSLYEEKKKAVETGEKSLADLKKKKADASTETEKANYQIQI
                     DEQTKKNKTLSTNLKNWATEMNAIIANGGTLNAETFANGLSQLGNISDEQLSALWQNF
                     VSTSTSIDNTLSGLAAIMGQRGGEGVQAFVTALQSGDYTTAALNINNDVMNTLSTLPN
                     GMFQNGQSGKDQFITAIKSGDFQGAGKFLLDGVKLGASPLPGEMNNIGKQGGNANADG
                     LKSTAEANKSAGAELKNNAKNGAFDPNLFKMTGSNNASGFNSGILDGKGNAFSAGTGI
                     GNSAKSGAGSVDSSGVGSDFASGYVNGILSGMGAVGEAAGSLANKALQAVKDAQKSKS
                     PSKKAKKLGGDFGSGYSLGIASKTKAVNKAASNLVAGALGTESQIKKLSSTLKDKISS
                     AIDAGLHSKNKSRGQLKQAKALNSIEGYIVQQTNRLAATAKKRDKVVAQLKAANTKMA
                     DLTKQSKEYAASITEKMQSYGSISNVDAENPQSIQAEMQKRLKEIKAFQANVEKLRKK
                     GVSKDIISDILESGVENGSSYAQALAKSDAKTIKAINSTQNQINSASKSMGNTAANAM
                     YSAGINAAKGLINGLNSQKKQLENTAKSIANTITNSVKKALRIHSPSRVAIELGKFFT
                     DGLGNGVLAGAKGAVQSTNKMVDKVVNAASNLTVPAITLPKISAEKALGLKSVDLNRT
                     ITVKTIIDNKTKESSNADLIKAIKESGAKPVILNLDGEVLANNSNNRIGSMTDLGLYG
                     GGLL"
     gene            16708..17535
                     /locus_tag="U0280_000799"
     CDS             16708..17535
                     /locus_tag="U0280_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HEM2270754.1"
                     /translation="MNKKTDLYLMQANKIIKLNEKHNFEISEVSRASPQIINNYTSYE
                     FSDGNRSSDSNFDSFDIEFTCRFKTNGNIDYHVRLDELFEDIFIRKEYYIFHTKTPGK
                     KYCVHPAPFDIDRKGAGHAQFTLRFEVFKGFSESLGTSLSPFAFSEGIWQAGQGIVSQ
                     NYKYKHTSNRFIVYNAGSFDIDPRMHDLRITIKNCRSDGLLTINNKSTGEKFVFNEKI
                     YAYDTIELDGSNILKNGVRCGRKTNLGLISLLSGGNEIEIENVSNIETTWDFPFLYK"
     gene            17550..18572
                     /locus_tag="U0280_000800"
     CDS             17550..18572
                     /locus_tag="U0280_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2270755.1"
                     /translation="MDIFVSDYEKQYKEILTGFDPTTFSETWVENQQWQLDFYVEKTR
                     NNQDVFDLLNHESSVYLDGQEFVVKQLKRGAVGKIVYSEVTATHIYFTMQDDYQYNAI
                     SGSKSAKDCLTHIFAADKQGFSFELIDKNKVLENITQENFGNGNLLKLVQEVLEDYKL
                     VMLADNKRLTFIPSEDYGEHTENEIRYNKHTNEVDFDIDTLSLRTQIKGYGKVDSNGN
                     NYFPPVTFTSPESAKWGVRIQEPLSDERYTTSSSMLRRLKLELQDYPATTGNISLKLK
                     YECGKGDYVMFVYEPLGLLYEVQIVAYKKYIFTNKPPELTLSNNKKTMVSIMVQLAKA
                     IKRGAK"
     gene            18573..19598
                     /locus_tag="U0280_000801"
     CDS             18573..19598
                     /locus_tag="U0280_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270756.1"
                     /translation="MDLKKWQDPLMNSELQQNYNDNLVKLAGSLEKANQDMTHVNQRI
                     SNLVIKSGGNESNEVVDARVSSLVPETEFTTLNDRINYAENALITGVGKLSTNVFDLM
                     DKYNDIDTILKRLYGLDSSNIEIFVDDARGDDIAGTGEIDAPFKTINKAVMTLPRVLN
                     SNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPTSSTGCQVRSISATGSNGY
                     LYIAGLEETNTAGTTKNYFIKATRCGFVRITKCRMAFNTKAIDPFTAVFIDACSADVN
                     GCYFASQNVDVRGYNTARVEVQNIVHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLS
                     GGGVVRT"
     gene            19595..20662
                     /locus_tag="U0280_000802"
     CDS             19595..20662
                     /locus_tag="U0280_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HEM2270757.1"
                     /translation="MTENVIHKNGVYDFNVTTQEDKPLQKSVFYTQDSGGTARLIFNI
                     DKDNQDLVLSSAAELELAMILAKGTESESKYLVKPTIIDGVRGIAEYSLTDSQIAHAG
                     NAIAELYIKYKNSQAMRVYKFSFEIKKALIDSDFFPVSEFYVERWDDYEKIFDESFER
                     LNTKLDDVDKKADDLKTQFDDMQPSQFAQKTDLNAHVNNADIHVTAADKTNWNSKETA
                     SSAQAKADKALADAKTFFELASAVQSVTLTPKNGFVASQPLVARYIKFGNRFLVIVSG
                     IVGKGTGNGTGICATLPTFLAPDASWNKLYSAAQQSTAASNQANIYLSVSADINIVGV
                     GSVDVNTGLDGIIYLTKEVTT"
     gene            20659..21000
                     /locus_tag="U0280_000803"
     CDS             20659..21000
                     /locus_tag="U0280_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270758.1"
                     /translation="MSELIKVFKYDDNGVFERDDLIILKKGEKIPDGYTLIEPPVPAI
                     NPVFNTKKQKWSSGEEASIPEPPELTELEKLTQDYADLMLYVAEVEQKTEQTQQDNAN
                     LLLSLAEAGVL"
     gene            21001..21147
                     /locus_tag="U0280_000804"
     CDS             21001..21147
                     /locus_tag="U0280_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HEM2270759.1"
                     /translation="MINWYEKVKDYFLGGYYTEADVNKFVTLKKITRSQADEIIAMKE
                     AKAE"
     gene            21188..21493
                     /locus_tag="U0280_000805"
     CDS             21188..21493
                     /locus_tag="U0280_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003733957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270760.1"
                     /translation="MVLGSISIAGMSVGELIALISLIAAIVGFVIRWALVAPLRNMID
                     SLDITLKSLREEMSESKKDRMSLREKQNDHDKEIALLKREDKAIWKYVTEKNEKEVK"
     gene            21493..21774
                     /locus_tag="U0280_000806"
     CDS             21493..21774
                     /locus_tag="U0280_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM2270761.1"
                     /translation="MKINWKVRLKNWRTVVATLITVLGVAWTAGGFTISDLDNWSVLW
                     LSFVRFLNSPMAIITTIVAVVGILMDPTTSKFSDSLKVMNYSEPRKDDK"
     gene            21774..22724
                     /locus_tag="U0280_000807"
     CDS             21774..22724
                     /locus_tag="U0280_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase family
                     protein"
                     /protein_id="HEM2270762.1"
                     /translation="MSVLQYNYINKNQFSRPGYKLLRVSKIVMHYTANPGASADNHRR
                     YFRDLKERYASAHIFIDDKEAICIIPLNEVAYHANERSCKLTALQASTSYYRGGNANL
                     TSIGIEMCLDKNGNITVATFNRSVDVAAELCKTYDLTASDIIRHYDVTGKNCPAPWVA
                     KPSELTRFRNAVNAKLKGASQNKNRHDGKVVDSAPLLTKMDFKSSPFRMYKAGTEILV
                     YEHNQYWYKTYIDDKLYYMYKSFCDVVAKKDAKGRIKVRIKSAKDLRIPVWNNTKLNS
                     GKIKWYAPNTKLAWYNNGKGYLELWYEKDGWYYTANYFLK"
BASE COUNT         8078 a         3746 c         4968 g         6114 t
ORIGIN      
        1 aaaagttaaa tgtatttacc agagaaacaa tttgtaatgg aaaggacata gaaatagcta
       61 attataatat tgaattagaa gcaattagtg aagaatcttt tattgataca gctgaaaagg
      121 ttgagaaaat aagggagttt atcgaaaatt tataaagtga tgggggcgac tttatgggac
      181 aattattcaa tctaccacaa gttgaagata ttaactacat tcagacagtc agagcagtaa
      241 gaaagttctt taaagactat ttaatgctgc gtgtgatggc aggaagtcgt aaattgccga
      301 caatgacaac aacatacaaa ttaacgccac cgaatttcag taatgaattt cattcaaaag
      361 tagaagatgc tgcaattcat aatgtcgata acgttcatgc agcacaagaa gcaataaaaa
      421 aatatgatgc tattttgaat caacttgagc acattcatag aaagatactg tttgagaagt
      481 tcattcataa cttacaagat ataactatta tgcttgatat tccttatgaa gaaaggcaat
      541 acaaaagaga gaaacggaag gctgttattg aattagcaac aacacttggg attgaagtgc
      601 taaattgaaa tggcactttt tgggcacttt ttgagcaaaa aaaggtgata aaatgttatt
      661 agtgagaagt gaagatgatt acaaaaataa aatcttatat tgagtctgcg ctccacttct
      721 catttataat cttatgatga tatagcagga gattgctatg ttgcctggca gaggctttgt
      781 atctggccat tagtctcaac agatgacgac acttctgttc aatctcatat cctatccaca
      841 ctggatgtaa aacacgcatg tggcgctgac tggtgcgtta accagtttta aaaattataa
      901 tcctttccat ctgttaataa ttgagcaggt ggtttttatt tggtatagtg aagataaaag
      961 ggtggattat gatgcaaaca attatctctt tagcaatttt aggaatagta gcttttattg
     1021 gatactgggc taaggacctt ccggggatat acaaagctat aactgtagaa aataagagga
     1081 aatttaatga attggatatt caacgagagt ctttttttag acaactcaga ggggatgacc
     1141 tggcaaatac gtttggggaa tgggtgtctg cgtatactga catggatgaa ttcgttgaaa
     1201 aagcacctac aattcttaaa gatatgcaaa aaaaggtcat tatgtatggt tcgcctaaaa
     1261 ctgtatctat tttagcaatg ttatctcaac acacatatat tggtagcgga gaagaagatg
     1321 ttgggaaagg tacgagattt gataattata agctaatgtt atatatagct aatttaatag
     1381 cctctctaaa atttgatttt acaggatata aaattgatcc catggatatt gttcgtgtga
     1441 gaatcactga ttataaagaa aatgaaacac aatttaaaga aaatcaacaa aagattgaaa
     1501 cagaaatcca aaaacttgga tatgaattat gagtttattt gaaataagac atttagttcg
     1561 aagttaatat attaacagtc ccgattattc ggggcttttt tgatacataa aaataaggag
     1621 tgatgaaaat ggaaagcaat aaaacattag ttatttggtt caaaaatgga aaaacagcta
     1681 tttttgagca agtggaaaat cttgatgctg ccgaaaaagc tattgtattt gattattacg
     1741 gtaaatctac cgaaacaaaa agaagcgccg ctttttttct agctaatatt gctggctttg
     1801 cagagtcggt ataagaaaag tattttatta aaataaaggg agttggtgat atgtagtgaa
     1861 actaaccgaa aaacaaaaac gatttgcaga tgaatatata aaatgcggta atgctacaga
     1921 agccgctcgt cttgctggtt atagttcgaa aacggctaat cgtatagcga ccgaaaactt
     1981 gtcaaaacca gttataaaag gctatataga caaggtttta agtgaactcg aagaaaagcg
     2041 cgttatgggc tatacggaag ccatgcaatt attcaccgaa atagctcgag gtgaaatgga
     2101 agaagaagta attgtttcga atggtgatgg cttttccgtc gttacaaaga gtgctgacat
     2161 caaccaacga gtatcagcat taaaagagat tgttaagcgt catgtagcag gcggtagaga
     2221 caaattacaa gaagagctta ttcaagcgca aatcgataag ttaagagcag atacgaagca
     2281 agaaagcaat caaggaacaa caacaattat catgtcgaac gttgacgaaa tgcaagccta
     2341 ccttgataaa aaggcaggtg gcaccgatga acgcgacgat acacaaacaa ctagttgatt
     2401 atcaggttat caatgtaact gatatgatta atcctgcttt ttatgacttg tggctatcta
     2461 aacataatca catcatagca aaaggcggac gttcttctat gaagtcgtct gttattagtt
     2521 tgaagctcgt agaaaagaaa atggctaatc cgaaatctaa catggtgtgc ctacgtaaag
     2581 tagctaatac gctttataag tcagtctatc agcagattaa atgggcgctt tatgaaatgg
     2641 gtgttgctga ccaattcaat tttggtaaat ctccaatgga aatcgttcat aaaacttggg
     2701 ggacaggctt ctacttctct ggttgtgatg atcccgctaa actaaaatca atgaaaattc
     2761 cagtcggtta tgttagcgat ttgtggtttg aggaattagc ggagttctct ggcgtgactg
     2821 atattgatgt tgtagaagac acattcattc gtgaagattt gccggatggt caagaagtta
     2881 caacatacat gtcatttaac ccgcctcgca atccttacga atgggtgaat gaatatgtag
     2941 acactaaacg tggtgacgat gattatttaa tacatcacac tacttatttg gatgatgaaa
     3001 aaggcttttt atccaagcaa atcattaaga aaattgagaa gtacaaaaag aatgacctcg
     3061 attattaccg ctggatgtat ctaggagagg taattggtct tggtgataat gtttataaca
     3121 tgaacctgtt tcagccgctt aaagctattc ctgcggatga caggcttatt ttaattgatt
     3181 tcgctattga tacaggacat caagtgtcag ctacaacata tctaagtttc ggtctcactg
     3241 caaaaagaaa tgttattttg ctaaacacat actattatag tcctgctaat caagttgtta
     3301 aaaaagcgcc tagcgagtat tcaaaggagt tgcgggattt tatgactaaa gtagttggaa
     3361 actacaatac aaatgttgat atgcaaacag tagatagcgc agagggaggg cttcgcaatc
     3421 aatattataa agattatggc gttagcttac accccgtcgc aaaaggtaaa aaagtggata
     3481 tgattgactt tgtgtgtgat ttgttggcac aaggtcgttt ttattatctt gatattccag
     3541 aaaatcaaat attcatcgag gaacatagaa agtatcaatg ggatgttaaa acaatcaaca
     3601 cagacaagcc cgaagtcatc aaagaagatg atcatacgtg tgatgctttt cagtactatg
     3661 taaaagacaa tctaaggaag ttaggtctca aattctagga ggtgaaaacc ttgattaatc
     3721 aaataatcgc aagcgtgaaa ggagtgatgc ggagaatggg actattgaaa gcactgaaag
     3781 atgtaaaaga ccataaaaaa gtaaatgcta atgatgaaga ttataagtat attgacatgt
     3841 ggaaacggct atatcaaggc cattacgctg aatggcataa tctaaattac gaacacaatg
     3901 gcaatccggt taacagacgt caattatcta tgaatttgcc gaaagttaca gctaagtaca
     3961 tgtctaaact tctttttaat gagaaagtga aaatcaatat tgatgataaa gccgctgagg
     4021 aattcgtgct taatgtattg aaaacgaacg gttttactaa aaatatggag cgttacatcg
     4081 aatacggcga agcgatgggc ggttttgtaa taaaagtgta tcacgacgga aaaaagaacg
     4141 tcaaagtttc attcgcgaca gccgattgta tgtatccttt gtcaaatgat agcgagaatg
     4201 tagacgaatg tgttatatct aatagttttc ataaaaacga taaatattat acgttgctcg
     4261 aatggctcga atggaaaggg gagaaagtag aagtatacac agtcacaacg gagttatacc
     4321 aatcagacga cccgaacgag cttggtacaa aagtaagttt agcgttactg tttgatgata
     4381 ttgagcctgt tgcgccattg tcaaagttta cacgtccgac atttacttat atcaaaccta
     4441 acattgcgaa taacaagaat ctaacgagcc cgctcggcat ttccatttat gctaatgcat
     4501 tagacacatt aaaaacgctt gatttgatgt tcgattcata ctatcaagag tttaaacttg
     4561 gcaaaaagaa agtattggtg ccttcgagct tcgttaaaac ggctgttaac ctagacggct
     4621 caaccacgaa ttatttcgat tcaactgatg aagcattctt tttatatcaa ggtgaccagg
     4681 atgcagatgg taaatcagta aaagatatat ctgtagagat tcgttcaacg gagtttatcg
     4741 agtctataaa cgcaatgcta cgcatttatg cgatgcaagt tggattatct gctggcacat
     4801 tcactttcga tgaaaacggc ttaaaaacag ctacagaagt tgtaagcgag aagtcagaaa
     4861 cctatcaaac taaaaacagt cattcgcaat taattgaaca aggcataaaa gaaatgattg
     4921 tgagcattct tgaggtcggg aaatttatcg aagcttatag cggcgatata gttgagttag
     4981 acacgattac agtcgatttt gacgactcta tagcgcaaga cgaagataca actatcaatc
     5041 gttacacaaa cgctaaaaat caaggtatga ttccgctaaa aattgcttta caacgtgctt
     5101 ggaatattac tgaagctgag gctgatgagt gggctgaaat gttagcgaag gaaaaacaag
     5161 cggaaatgcc taacaacgat atgactggga tattcggcga agaggagtga tatagatggc
     5221 actaactcca agacaactcg acttgtttgt gcaacctgtt gttgatgttt acacaacgct
     5281 cgaaaatgaa ttgttcactc ttattgttcg ccgattgaaa acaaagaaaa atatcagcgc
     5341 agataatgtg cttgcttggc aaatagaaaa acttaatcaa gttcatgcac tagatcagca
     5401 aatgattgaa cgaatttcca aagcttccgg cgtttcagct aagaagcttt tttctattgt
     5461 taaagatgcg ggatacagcg atttaacaca agtagataac tatttcagta aattagctga
     5521 aacaggcgct gtgttgccac tagtaagcga tgggcaaacg atagtcgata aagtaatgag
     5581 aagttatttt aagttagcac aaagcaacta taatcgcgtc aatcaaacga tgttatcgca
     5641 agcaagacaa atctattcag atatcattca cgaaacgaca cagagcgtct tagctggttt
     5701 aaaaacacat agacaagcat tagcggaaac agtaactaaa ttcgctgaaa atggcgttcc
     5761 tgcgcttgta gataaggcta ataaaagatg gacaccagag gcttacgtcc gaaccgttac
     5821 aagaacaacc gtcaacagcg tttataacag cgttgaagat gagcgaatga atgaatatgg
     5881 cgttgattta gtgcgtattt cgcaacatgt aggagctaga ccaacgtgtt caattgttca
     5941 aggcaaagtc atctgtttgt tatctgttga agaaacaaaa acgaaatacg gcaataaata
     6001 catgtctatt tactcgccag agcttagata tggttatgga gatgggattt tcggttgtaa
     6061 ttgccgtcac catcgttttg ctttcgttga aggcattaac attgcaccag gcgagaacga
     6121 gttaatagac gaagaagaaa acaaacgcgt ttatatgttg agtcagcaac aacgattgat
     6181 ggaacgcgac ataagagcag ctaaacgcaa gctgtcagct gccgaagaat taggcgatga
     6241 actaacagtt aaaaaggcta aacaagctgt tagaacgaag caaagcaagc taagagcatt
     6301 tgtaaaaacg cacaatttaa caagacagta tagcagagaa aaagtatatg cctaacattc
     6361 gacctgaacg aaagtcgtta aaagtcggct ctcgtgatcg tatcacgtaa aaacaacgta
     6421 ggaggaataa gaaatggaaa gagacttttt gaaggaatta ggcttggaaa aggaaactat
     6481 cgactctatt atggtcgaac atggtaagtc gattcagaac gaaaaggaca aggtaacatc
     6541 agcggaagca gaaagagacg ggcttaaaag ccagcttgcg caacgggacg atgatatcga
     6601 agctttaaaa actgattccg gaacgagcaa atctttaaaa gctcaattgg aaacactgca
     6661 agacaattac gaaactttga aaaaagattc ggaagctaaa ttagtagaaa ctcgcaaagg
     6721 tgcagcactt gatttagctt tagcaaatgc gaaagcaaga aatccgaagg ctgtaaaagc
     6781 tttactggat aacgacaaac tagaactgac agatgaagga ctgaaaggcc ttgacgaaca
     6841 gctaggagca ttgcaagaaa gcgatgctta tttgtttgct caagaaagcg aggcggttcc
     6901 gaaatttgga ttcagtggca atccaacagc tccggctggt ttcagcggtt cgttgaagga
     6961 aaatttaaaa tcagattcat ttaatttaac aaaattttta acggaaaaag gagagagtga
     7021 ataatgggaa atgaaatcac aaaattatta gacgtagtaa caccagaggt ttttaatgcg
     7081 tacatggata acttcacatc tgaaaaatca gcaattatcc aatcgggaat tgcagtggct
     7141 gatccaagcg ttgcgcaaaa tattacagcg ggcgggttac ttgttaatat gccgttttgg
     7201 aacgatttag acggcgaaga cgaaacttta ggtgacggtg aaaaagggct agaaacaggt
     7261 aaaattactg ctagcgctga cattgctgcg gtaatgtatc gtgggcgcgg atggtcagtc
     7321 aacgaacttg cggcggttat ttcgggagac gaccctttag acgctttaat ggggaaaatc
     7381 gcttcttggt ggatgcgtcg tgagcaaact gtactaattt ccgtgttaaa tggactgttt
     7441 gctaaaaacg gtgcattggc aagttcccac ttgctatcaa aaccaacatc tgcaatttcg
     7501 gggaatttag tattagatgc aaaacagctt cttggagatt cttcggatcg tttaagctta
     7561 atggttatgc attcagcggt ttatacagcc ttgcaaaaac aaaacttaat tgcatttatt
     7621 ccaaatgctc gtggggaagt caatatccca acttatttag gatatcgtgt agttgtagac
     7681 gacggagtgc cttccacagg aacaggagca gcaaaagtat acacttcata tttatttgca
     7741 acaggttcca tcggaagaaa cacagggaac ccagctaagt taacaacatt tgaaacagct
     7801 cgggatgcct ctaaaggtaa tgaccaagtg tttactcgac gtgctttcac aatgcaccca
     7861 tatggagtta aatttaaaaa tgcagttcgt gatgctaacg aaatcactcc aacaaatgcg
     7921 gacctagcaa aagctggaaa ttgggaaaaa gtttacgaag acaaacaaat cggtattgtt
     7981 ggtattcagc atctagttga agaattacca gctagcggag catgataaaa gggggcgaat
     8041 attatgcctt acacgacact agaattttat actaacgagt atgcggggga gcatttggaa
     8101 caggatgaat ttgacaaact gttaaagcat gctgaaagaa aaattgattc agtgacattt
     8161 taccgaatac gcaaaagcgg gattgaatcg tttagcgaat ttattcagca tcaaatacag
     8221 ttagctactt gtaatcaaat cgagtatttc aaagaggcgg gcggaacaag tgagttagct
     8281 gtttctaagc cggataacgt atcaatcgga agaacttcta ttagtgatag taattttgca
     8341 tcaactgcta catcacttaa tagcggattg attggtagcg atgtaaggtc ctatttagcg
     8401 catacaggtc ttctttacaa cggggtaggt gttcgttaat gaaagtagta aaaccgataa
     8461 caaatgcccc tccgttgcct cttgactggc taattcataa cattagttat gaagcgtata
     8521 aagaagaaga tagacataat caagtcgttt atgaaaaagg cattgagatt gaacatgttc
     8581 gtgttgattt ctcaaaatca aatcaaatcg cgggattatc cgatagtgat agatatgacg
     8641 cggttatctt tattgatgca gtgaacagca tgaacgtgcc agctgatttt ataagtagat
     8701 cgagaatttt tttctctgga aaagcttata agattgtcaa agttatacct tgttatgcga
     8761 cctctgaaaa tgtgcaccat tgggagatag aggtggtttg atgccgatta aagttaatat
     8821 tgacctttca aaagccaaaa agaatgtaaa aaaagccaag gaaggcgcac aattcgcttt
     8881 aattaatcaa gccgctgccg atatttcttt gtatgtcccc tttttggagg gtgatttatc
     8941 aaatcaatac gttattatga acgacaaaga aataatgtgg acatctattt atgcacggag
     9001 actctacaac ggaataaact tcaatttcac actcacacat catccgttag ctggcccgga
     9061 atgggaccaa cgggcaaaag tagataagtt agaaagttgg atagaagtag cgcaaaaatc
     9121 ggttgaggag ggactataat gtcattagat tttttagata gtgttatgga tgctatcgaa
     9181 aacaacgtcg atttaaaaga tatgaaatta agaacagcga tattaaaacc cgagtcaatc
     9241 gctttgctac tgactccaaa taacgataaa caaggttatc aagacggctc ttatgagcgg
     9301 tctttttctt ttaatctaaa cggatctagc aagcaagaaa tgaaagtttt aggtgttttg
     9361 aatgcaattg ctgcttattt tgataagaca gaaatagaga gtattcagag cttaaataac
     9421 agctttgtgc tagaagacaa agaaacaact agtgtgccga acctcgtttc ggcgagcgat
     9481 gatggaacat tcatttatag cgctagtttc aaaatcaaat tatatattga aagcgaggaa
     9541 aaataaaaat ggctagaatt aaaaatgcga aaacgaaata ctttgtagct gaaattgttg
     9601 atggtgcggg cgagccagta tggaaacggc tgtcaaaatg gattacaaac gtgtcagacg
     9661 atgggtcaga taacaccgaa gagcaaggcg attatgacgg tgacggcaac gaaaaaacgg
     9721 ttgtgctagg ttactcagaa gcttacacat tcgaagggac acacgatcgt gaagacgaag
     9781 cgcaaaactt aattgtcgct aaacgtagaa cgccagaaaa tcgcggaatt atgtttaaaa
     9841 tcgaaattcc agatactgaa acagcaattg gtaaagcgac tgtttcggaa attaaaggtt
     9901 ccgctggcgg cggggatgct acggagttcc cagcgttcgc ttgccgtatc gcttatgacg
     9961 aaacaccaaa agttacaaaa ccctgaggag agcccgtcca gcgtcgaagt ggacaaggcg
    10021 actattacgt taaaagttgg tgaaacatcc actattactg cttcagtatt acctgtcgga
    10081 gcaagtcaag aagtaacttt tacttcttca aatccaccaa aagcaaaagt aaatgctagt
    10141 ggagtggttg aaggtgtagc agaaggaaca gcaaacataa ctgttgcatc taaaggaagc
    10201 ccttctatca ataaagtagt acaagtaaca gtggaagcag cagattaata aataaagccc
    10261 ttactcaatg taggggcttt taaattggag gaaatcatac atgacacaaa acaatgtaat
    10321 taatattcaa ttagaagaat catatcaaga gtttcagctt ggcacggaac tgtttagagt
    10381 tggtttaggt gatgaaatgc gccgcaaatg gattgaagca gatgagaagt acaagaagaa
    10441 actggaaaag ctaaataaat acaacattga taatacagac gaaatgagtt cagaagaata
    10501 ctttacatta gaagaagatg taaaagaggc tttaactgaa gcatatgcaa ttttattgga
    10561 tgacgaaaaa gcattcgata aatgttatgc gcaatgcaaa gatattttaa aaatgtacca
    10621 agtatacaat caagttgcag aaatcattgt cggttcagta gaaaaacaac aaaatgaaat
    10681 tcaaaagaaa tataaagcaa aaatgactaa aaaagcgaag tgatttaaat gctttcgctc
    10741 gcttttggag ttaacgatat ttacgaatac gaggggaaag agtataagct cgatttagct
    10801 tttgacaacg ttctaagagt gattgattta acggaagata atagtttatc tgatgtgttc
    10861 agagctaacc tcgcaattga tgtgcttttt gctgatgata tgccttggcc acgttcaaat
    10921 gaggaagaca aatacgcgaa cattgaagaa aaatcgttgg tgcttattga tattttcact
    10981 aattatattg ttaaagaaaa tgacgatggt ttgctttatg atatcgacgg aaacaagatg
    11041 ccaagcgcta caaacaacaa tgacgaagcg gaagaaattg cttcatattc attaacgcaa
    11101 gatgcggatt atatctatgc ttctttttta caagactaca atattgattt attagatagt
    11161 cgcgggaaga tgcactggta taagtttaga gcattgttag aaagtttgcg tgatgataca
    11221 acaattaaaa cgataatcgg cattaggcaa gcggaattac cttctggaaa aggaacagaa
    11281 aaagaacgaa acgaattaat taaactgaaa aacagatata agttaaaaga ttagaggtga
    11341 gaacatgagt gatggatcag tagtaattga gattagttta gacgataaaa aagcagacaa
    11401 acaacttgat gcttttgaaa aagatttgga aaaagcagga actaacgcgg gggcggcatt
    11461 agataaagca tatagagaag cggtttcaga tattgctagt caatcgaaac gattaaaaga
    11521 cacgtttgta aatgcgttta aatcgatggg aagcgctggc tcaaatgctt taaaagctag
    11581 tttgaacttt atgcgtgagt tgccttcaaa tgtacaagcc gcactatcta aacttgcatc
    11641 aacagtaaaa actgggttcg taaacgctgc taaagcatct attacagtga taaaggaact
    11701 tggaacaagt atcaaaaaca cagcagttaa tatcaaaaac ggcttctttt caattgctaa
    11761 gacagtgcaa agtagtattg tgtcagctgt taaagtatca attaatgtca ttaaatccat
    11821 ccctagcgca attaaaagtg ctggaatcag tattaaatcc gcattagtaa gtagtttgca
    11881 agcagctaaa tcggctgcta tttcttttgc tcaaactact gtaaaagtta ttaaaagtat
    11941 tccagtagct gctaaaacag cggctacagc agtgaaaaac agtttcgtag tagcttacaa
    12001 agcggtggta gttgctgctt atatgagcgt aaaaggaact attagcgctg tgaaagctat
    12061 tcctagtgct acaaaatcag cagcgttagc agtaagtagc gcaatgaaaa cggcttttag
    12121 cgctgtagca agcgcggcga aaacgacagg aacaacagtg aaatcagcat taaaaacagg
    12181 atttagcgct gtgaaatccg gagcgaaagc ggctggccaa gctggcattt ctgcattaaa
    12241 aggcctagga aacattgcga aaagcactgg ctcgttaatt aaaagtggat tagtaagcgg
    12301 atttaacgca gctaaagcgg cggcaaaagg tgcaggcgct ggaatgcgtg aagcgttaaa
    12361 aaattcggtt gaaaagcccg ccgaacaagc tcgttttagt cttcttaaat tagcagcggc
    12421 attaggactt attgcggcta ctaaaaacgt cgtaggcagc gctattgggc gtgttgatac
    12481 gattgatact gcgactaaat cgttaactgt tttaactggt tccgcaaaag atgcacagtt
    12541 agttatgacg gatttaaccg ccgctatcga cggcacacca attgcgctcg atgctgtcgc
    12601 attaggcgct aaaaaaatgg tagcagcggg tatgaaagca gcgaatgtaa aacctgtttt
    12661 cacagctatt gctgatgcgg cgtatggcgt cggaaatggt tcagaatcaa ttgaccagat
    12721 gacagatgct atctcggcat tgcaagcgag tggcgttgct tatgcggatg atattaacag
    12781 gctagttgac gcgggcgttc ctgcatggca aattttagca aattccacag gtaaatctgt
    12841 tggagaaatg aaaaaatatg tttccgaagg atctttagaa tcaacaaaag ctatcgcaat
    12901 gttgacaaaa ggcatcgaag aaggaacaac tggaatggct gggaatactg ccaaaatggc
    12961 aggtctagca aaaacagcag gtaacactat cagcggttca tttgcaaaca tgaaaaccgc
    13021 agccgttaag agccttgcta atatcgccga aaacttaaaa ggcccgatta ttcaagcgct
    13081 agatgttgct aaaaacgcat ttaaacagtt tgcggcagta acagcaagtc ctgaattcca
    13141 gaaaaaactt tctgatttaa tccaaaaaat taaagagttt atacctgttt taatcgaatg
    13201 ggcgccattg ttggcaaaag tagccgctgg atttgtggct tttaatatta ttagtagcgt
    13261 attttcaaaa gtagctaaac tagcaggagc gataaaaagt ttgacgtcta gcgggtcact
    13321 actttcagtt gtagttaata caattaaagg gtcattcgtt aaattagcag gaacactcgg
    13381 ctcaacaact gctgctttcg gcgttgttgc tgcggcggtt ggcgcagtga tagctgttat
    13441 ctatggaatg tataccgctt ttaaggaaaa cacggcgggg ataaaaagct ttctatctgg
    13501 catgtgggaa gcggtgaaaa actcattcgg caagataata gatgttttca aacaaatagt
    13561 atcagcccta aaacccgtcg gaagcgggtt taaagacata ttgaaatata tcggcgtggg
    13621 ggcgtggatt gtacttggtt tcgctttagc ggctgtcgtt gatattattc aagtgctagc
    13681 acgaatagtg ttagtagcta ttaaagcgct acaggggctg tattatgcta taaaagcagc
    13741 atttcaagct ctacattggg atttgaaagg tgctaagaaa agcttagagc aatcaaaaga
    13801 tgcgtttgtc gaagcaggtt cagcaataaa agatgcattt aacaaagata attatgcact
    13861 gactggaaca gttgaagcat tcaaacaaat gggcggagaa gccgaaaaaa cagcaaagaa
    13921 aactgaaaca tccggcaaga aaataaagga aacattaaag cttgtagaaa caactgccaa
    13981 acaaactgaa acaactgttt cgaagtcgaa tcaagcaata gatacgatgc tgaacggcgg
    14041 agttgatcag tatggaaaga aacttagtga aaaaactgag tcattcttaa atgcggctaa
    14101 agacctttac gaacaatatc aagaagcaac taaaaagtct caagataaat atagcgtagc
    14161 tatggaaaag gctcagagtc tcgaaggaga taagcgtaaa aaagctatag cagatgcaaa
    14221 taagacttta gtagacgaaa caacaaagaa taatagcacg ttactaactt tgcaaagcga
    14281 ttattcaaat atgctaaaaa caaatcgttg ggctgacggg caagagttaa ctgctcaaca
    14341 gaagaagttt ttacaacaac aaactactga tattcaaaca gagttagcga aacaaaatca
    14401 gctgtatgtt gaagcgaact tattgcgact agaacaaggt aaaagcttaa atgaaaagga
    14461 aagaaatacg agcttagaag ttcaaaagag cttgtatgaa gaaaagaaaa aagctgttga
    14521 aactggcgag aaatcgcttg ctgatttgaa aaagaaaaaa gcggacgctt caactgaaac
    14581 tgaaaaagca aactatcaaa ttcaaatcga cgagcaaacg aagaagaaca agacgctgtc
    14641 tacaaactta aaaaactggg caactgaaat gaacgcaata atcgcaaatg gaggcacttt
    14701 aaacgctgaa acatttgcga acggattatc tcaacttgga aatattagtg acgaacagtt
    14761 gtctgcgttg tggcaaaatt ttgtttctac aagcacttca attgataata cgttgtctgg
    14821 tttagctgca atcatgggtc aacgcggtgg agaaggtgtt caggcgtttg ttacagcact
    14881 tcaaagcgga gattatacaa cagctgcatt aaatattaat aacgatgtta tgaatactct
    14941 ttcaactttg ccaaatggca tgttccaaaa cgggcaaagt ggcaaggacc aatttatcac
    15001 tgcgattaaa tcaggggatt ttcaaggagc tggcaaattt ttacttgatg gagtgaagtt
    15061 aggagcatct cctctaccag gtgagatgaa caatatcggt aaacaaggcg gaaatgcaaa
    15121 cgcggacggc ttaaagagta cagccgaagc aaataaaagc gctggtgccg aactcaaaaa
    15181 caatgcaaaa aatggcgctt ttgacccaaa tttattcaaa atgacagggt caaataatgc
    15241 atccggtttt aatagtggta ttttggacgg aaaaggtaat gcattttcgg caggcactgg
    15301 cattggcaat tctgctaaat ctggtgctgg ttccgttgat tccagcggag ttggttctga
    15361 ttttgcatct ggatatgtga atggtatttt gagcggtatg ggcgctgttg gagaagcggc
    15421 ggggtcttta gctaataaag cgcttcaagc ggtaaaagat gcgcaaaaat ctaaatcacc
    15481 ttccaaaaaa gcaaaaaaac taggtggaga cttcggctct ggttactcat taggtattgc
    15541 cagcaagacg aaagcagtta ataaagccgc aagtaatctc gttgctgggg cgcttggaac
    15601 tgaatcgcaa atcaaaaaac tatccagtac gttgaaagac aaaatatcct cagcgattga
    15661 cgcgggattg cattctaaga ataagagtcg tggtcaactc aaacaagcta aagcattgaa
    15721 tagcattgaa ggttacattg ttcaacaaac aaatagatta gctgcaacag ctaagaaacg
    15781 tgataaagtc gtcgctcaat taaaagccgc taatactaaa atggcggact tgacgaaaca
    15841 aagtaaagag tatgcggctt caatcacgga aaaaatgcaa agctatggat ctattagcaa
    15901 cgtagacgca gaaaacccgc agtcaataca agcggaaatg cagaaacgct taaaagaaat
    15961 caaagctttt caagcgaatg tggaaaaatt gcgcaaaaaa ggcgttagta aagacattat
    16021 aagcgacatc ttagaatcgg gagtagaaaa tggttcatcg tatgcgcaag ctcttgctaa
    16081 atctgatgct aagactatca aagcgattaa tagcactcag aatcaaatca attcagcgtc
    16141 taagtcaatg ggtaacacag cggctaatgc gatgtatagc gctggtatta acgcggcgaa
    16201 aggtctaata aacggactta acagtcagaa gaaacaacta gaaaacacag ctaagagcat
    16261 cgctaataca atcactaatt cggtgaaaaa ggcgcttaga attcattcac cttcgcgcgt
    16321 ggccatcgag cttgggaaat tctttactga tggacttgga aatggtgtat tagctggcgc
    16381 taaaggtgcg gtgcaatcaa ctaacaaaat ggttgataaa gtagtaaacg ctgcttctaa
    16441 tttgaccgtt ccagctataa ctttgccgaa gatttccgca gaaaaagcgc tgggcctaaa
    16501 aagtgttgat ctaaacagaa ctattacagt taagacgatt attgataata agacaaaaga
    16561 gtctagcaat gcagatttaa tcaaggcaat taaagagtcc ggggctaaac cagtcattct
    16621 aaatttagat ggcgaagtat tagctaacaa ctctaataat cgaattggca gcatgacaga
    16681 cttaggacta tacggaggtg gcttactttg aacaaaaaaa cagatttata tttaatgcaa
    16741 gcgaataaaa ttatcaagtt aaacgaaaaa cataactttg aaataagtga agtaagtcgc
    16801 gctagtcctc aaattatcaa taattatact agctatgagt ttagcgacgg caatcgttcg
    16861 agtgatagta atttcgatag cttcgatatt gaatttactt gcagattcaa aacaaatggc
    16921 aatatcgact atcacgttcg acttgatgaa ttattcgagg atatttttat tagaaaagaa
    16981 tactacattt tccatacgaa aaccccggga aaaaaatatt gcgttcatcc agcacctttc
    17041 gatattgata ggaaaggtgc tgggcatgcg cagtttacgt taagatttga agttttcaaa
    17101 ggttttagcg aatcgttagg cactagcctt tcgccttttg ctttcagcga gggcatttgg
    17161 caagcgggac aaggcattgt atcacaaaat tataagtata agcacacatc aaacagattt
    17221 attgtgtata acgcggggag ctttgatatt gaccctagaa tgcacgattt aagaattact
    17281 attaagaatt gtcgaagtga cggcttacta acaattaaca ataaaagcac tggtgaaaaa
    17341 ttcgtattca atgagaaaat ctacgcttat gacacaatcg aactggacgg cagtaacatc
    17401 ttgaaaaacg gagtgcgttg cgggcggaaa actaatctcg gtcttatttc gttattatcc
    17461 ggcggaaatg aaatcgaaat cgagaatgta agcaatatcg aaacaacgtg ggattttccg
    17521 tttttatata aatgatggtg ggtgagaata tggacatatt tgtaagtgac tatgaaaagc
    17581 aatacaaaga gattttaaca ggctttgacc ctactacatt ttcagaaacg tgggtcgaaa
    17641 atcagcaatg gcaactagat ttttatgtag agaaaacaag aaataatcaa gatgttttcg
    17701 acttattaaa tcatgaaagc tctgtttatc tggatggcca agaatttgtt gttaagcagc
    17761 taaaacgcgg cgcagttggg aaaatagttt attcagaagt cacagcaacg catatttatt
    17821 tcacgatgca agatgactat cagtacaacg ctatttcggg ttctaagagt gcaaaagatt
    17881 gtttgacaca tattttcgca gctgataaac aaggttttag ctttgaactc attgacaaaa
    17941 acaaggtttt agaaaatatt acacaagaaa attttgggaa tggcaattta ctaaagctag
    18001 ttcaagaagt gttggaagat tataagcttg ttatgctagc agacaataaa cgattaacat
    18061 ttattccctc tgaagattac ggagagcata cagaaaacga aattcgctac aataagcaca
    18121 caaacgaagt cgattttgat attgatacgt tatccttaag aactcaaatt aagggctatg
    18181 gaaaagtcga cagcaacgga aataactact ttccgccagt tacttttacc agcccggaat
    18241 cggctaaatg gggcgtgcga attcaagaac cgttatcaga cgagcgttat acaacttcta
    18301 gcagcatgct aagacgtttg aagcttgaac tacaagacta tccagcgacg actggaaata
    18361 tctctttaaa gcttaaatac gaatgcggaa aaggcgatta tgtaatgttt gtttatgaac
    18421 cgctgggcct tttatacgaa gttcaaatag tcgcttataa gaaatacatt tttacaaaca
    18481 aaccgccaga attgacgtta tctaataaca aaaaaacaat ggtttctatc atggttcaac
    18541 tagcaaaagc aattaagaga ggagcgaaat agatggattt aaaaaaatgg caagacccac
    18601 tcatgaactc agaactacag caaaactata acgataattt agtaaaacta gctggaagcc
    18661 ttgaaaaagc taatcaagat atgacacatg ttaatcagcg catatctaac ttagttatta
    18721 aatccggcgg gaatgaatcg aacgaagtag tagacgcacg cgtttcttct ctggttccag
    18781 aaactgaatt cacaacatta aacgatagaa taaattacgc ggaaaatgct ttaataacag
    18841 gtgtcggaaa gctttcaacg aatgtttttg atctaatgga taaatacaac gatatagata
    18901 ctattttaaa gcgtttatat ggcttagata gcagcaatat tgaaatattt gtggatgatg
    18961 caagaggcga tgatattgca ggaactggtg aaattgatgc accttttaaa acgataaata
    19021 aagcagtaat gactttgccc cgtgtattga atagtaactc tgtgaatatc tggattgttc
    19081 ctggtcggta taatgaagat gtcgttattc cgccaatcat gggaggggat atctacatta
    19141 ggtctacaaa ctttgaaaca gtagacccta ccagtagcac cggatgccaa gttcgaagta
    19201 tttctgcgac aggaagtaac ggctatttat atattgctgg tttagaagaa acgaacacgg
    19261 caggcacaac gaaaaactac ttcattaaag cgacgcgatg cggatttgta aggattacaa
    19321 aatgccgaat ggccttcaat actaaggcaa tagacccgtt cactgcggtt tttattgatg
    19381 cttgttctgc tgatgtcaac ggctgttatt ttgcctcaca aaatgttgat gttcgcggtt
    19441 ataacactgc tagagtcgag gttcagaata tcgtccatgg cgcaaaaagt gcgattggtt
    19501 tgtatcctca aagcgccgat attttcaatc tcaatagcgg gacttgggaa gctgatacgc
    19561 ctacgaaact gagtggcggg ggagtggtta gaacatgact gaaaacgtta ttcataaaaa
    19621 tggtgtatat gattttaacg tcacaacgca agaagataaa ccacttcaaa aatctgtttt
    19681 ttatacgcaa gattctggcg gaacagctag acttattttt aatatagata aagataatca
    19741 agatttagta ttatcgtctg ctgctgaatt agagcttgca atgattttag cgaaaggaac
    19801 agagtcagag agtaagtatc ttgtgaaacc aactattatt gatggtgtta ggggaattgc
    19861 agaatactca cttacagact ctcaaatagc acacgctggc aatgctattg ctgaattgta
    19921 tataaaatac aaaaacagtc aagcgatgcg ggtatataaa ttcagttttg agataaaaaa
    19981 agcattaata gatagcgact ttttcccagt atcagaattt tatgtggagc gctgggatga
    20041 ttacgaaaaa atattcgatg aatcgttcga gagattaaac actaaattag atgacgttga
    20101 taaaaaagca gatgatttaa aaacacaatt tgatgatatg cagccatcgc aattcgcaca
    20161 aaaaacagac ttaaatgcac atgtaaataa tgcggatatt catgtcaccg cagcagataa
    20221 aacgaactgg aattcaaaag aaacagcatc tagcgcacag gctaaagcag ataaagcact
    20281 tgctgatgca aaaacttttt tcgaactagc tagtgcggtg caaagcgtta ctttgacgcc
    20341 aaaaaacgga tttgttgcaa gtcagccttt agtcgctcga tacattaagt ttggcaaccg
    20401 gtttctagtt attgttagcg gaattgtagg aaaagggacc gggaacggga caggtatatg
    20461 tgcaacattg ccaacttttt tggctcctga tgcgagctgg aataaacttt attccgctgc
    20521 acagcagagt acggcagcaa gtaatcaagc gaatatatat ctaagtgtga gcgctgatat
    20581 aaatatcgtt ggagttggtt cggtagacgt gaacaccgga cttgatggca taatttattt
    20641 aactaaagag gtgacaacat gagcgagtta ataaaagttt ttaaatatga tgacaacggc
    20701 gtatttgagc gtgacgactt aattatttta aaaaaagggg agaagattcc ggatggctat
    20761 acactaattg aaccaccagt accagcaatt aatccggttt ttaatacgaa aaagcaaaaa
    20821 tggagttctg gtgaagaagc aagcattcca gaaccaccag aattgaccga acttgaaaaa
    20881 ttaacacaag attatgcaga cttaatgcta tatgtagcag aagtcgaaca gaagacggaa
    20941 caaacgcaac aagataatgc aaacttacta ttatctttgg cggaggcagg tgttttgtaa
    21001 atgattaact ggtatgaaaa agtaaaagat tattttttag gcggctacta tactgaagca
    21061 gatgttaata aattcgttac tttaaaaaag ataacgagat cacaagcaga tgaaataatc
    21121 gctatgaaag aagcaaaagc cgaataggct tattttttat ggaccgacaa cgaggggatg
    21181 atgaaaattg gtacttggga gcatatcgat agcaggaatg agcgtggggg agttaatagc
    21241 tttaattagc ttaatagcgg caattgtggg gtttgtaatt agatgggcat tagtcgcgcc
    21301 tttgcgaaat atgattgatt ctcttgatat aactttaaaa agtcttagag aagaaatgtc
    21361 tgaaagcaag aaagatcgta tgagtttacg agaaaagcaa aacgaccacg ataaagagat
    21421 tgctttattg aaacgggaag ataaagcgat ttggaaatat gttactgaaa aaaatgaaaa
    21481 ggaggtgaaa tgatgaaaat taactggaag gtacgattga aaaactggcg aactgttgtg
    21541 gcaactctta ttacagttct aggagtcgcg tggacagcag gaggttttac tatatctgat
    21601 ttagataact ggtccgtctt gtggctttcg tttgtaaggt tcctaaatag ccctatggca
    21661 attattacca caattgtagc cgttgtcggt attttgatgg acccaacaac tagtaaattc
    21721 tccgatagtt tgaaagtaat gaattattca gaaccaagaa aggatgataa ataatgtcag
    21781 tactacaata taattatatc aataaaaatc aattttcacg cccaggatat aagttgctta
    21841 gagtaagtaa gattgttatg cactatactg caaaccctgg ggcaagcgca gataatcaca
    21901 gacgatattt tagagattta aaagagcgtt acgcttctgc acatattttt attgatgata
    21961 aagaagctat ttgtattatc cctctaaatg aagttgcata ccatgcaaac gaaagaagtt
    22021 gcaaattaac agctcttcaa gcaagtacaa gttactatcg cggcggaaat gcgaatttaa
    22081 cctcaattgg tattgaaatg tgcttagata aaaacgggaa tattactgta gcaacattta
    22141 atcgatcagt tgatgtagct gcagagctat gcaaaacata cgatttaacg gctagtgaca
    22201 ttatccgtca ttacgatgta accggaaaaa attgtcctgc gccttgggtt gcgaaacctt
    22261 ccgaattaac acgtttcaga aacgcagtca atgcaaaatt gaaaggtgca tcacaaaata
    22321 aaaacagaca tgatggaaaa gtcgttgaca gtgcgccatt gctcacaaaa atggatttta
    22381 aatcgtcgcc attccgcatg tataaagcag ggactgaaat tcttgtttat gaacataatc
    22441 aatattggta caagacttat attgatgaca aactatacta catgtataag agcttttgtg
    22501 atgttgtagc taaaaaagat gcgaaaggtc gcatcaaagt tcgaattaaa agcgcgaaag
    22561 accttcgtat tccagtgtgg aataacacaa aattgaattc tgggaaaatt aaatggtatg
    22621 cacctaatac gaaattagca tggtacaaca acgggaaagg ttatttagaa ttgtggtacg
    22681 aaaaggacgg ttggtattac actgctaact acttcttaaa ataaaactat tgccctcgcg
    22741 ttttgcgggg gttttttgtt ttatattgaa ggggattttt cataacttcg aattataagt
    22801 acatacgttc cacttcctca tacttaaata gtataatata atttaagtta aaaagaggag
    22861 aatttgggat gagacttttt gtagatgagt caggaactat aactag
//
LOCUS       DASDXX010000026        22579 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.026, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000026 DASDXX010000000
VERSION     DASDXX010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 22579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22579
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.026"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            140..601
                     /locus_tag="U0280_000808"
     CDS             140..601
                     /locus_tag="U0280_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HEM2270763.1"
                     /translation="MFTESMLFLLLFLLLGLIAKNNSLIIAVAVVILLKLFHVDGKAM
                     EMIQAKGINWGVTIITVAILIPIATGQIGFKDLIDSFKSAAGWIGLGAGIAVSILAKK
                     GVGYMAVDPQVTVSLVFGTILAVVLFRGIAAGPVIAAGIAYMAMQLVAFIK"
     gene            638..1759
                     /gene="citZ"
                     /locus_tag="U0280_000809"
     CDS             638..1759
                     /gene="citZ"
                     /locus_tag="U0280_000809"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEM2270764.1"
                     /translation="MTLSKGLENVYVAETSISSIIDDMLTYVGYGIDDLMENNASFEE
                     VIYLLWHLRLPNKDEFKKFKREIQENMAVSETIITSLRMQNHQKLHPMSVLRTTVSML
                     GVFDTEAELDDGEAVYRKGLRLQAKMPTIVAAFSRIRRGLDPIPPREDLNMAANFLYM
                     ITGEEADALSVEAMNKALVLHADHEFNASTFTARVCVATLSDVYSGVTAAIGALKGPL
                     HGGANERVFDMLEEIDQAGDVRNYIQEKIDTKQKIMGFGHRVYRGGDPRAQHLREMSR
                     KLTAEKGEEKWFDISLQVEESVWELKHLKPNVDFYSASVYHALGIDRDLFTLVFSVSR
                     VSGWLAHIFEQYRDNRLIRPRAIYVGPENRSYLPVEERI"
     gene            1779..3041
                     /gene="icd"
                     /locus_tag="U0280_000810"
     CDS             1779..3041
                     /gene="icd"
                     /locus_tag="U0280_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEM2270765.1"
                     /translation="MSQKIQVENGVLKTPNNPVIPFIEGDGTGSDIWAAAKRVLDAAV
                     KKAYNGEKEIAWKEVLAGEKAFKQTGEWLPQATLDTIDEYLIAIKGPLTTPIGGGIRS
                     LNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENTEDIYAGIEFKEGSEE
                     SKKLIDFLKSEFGVDKIRFPETSGIGIKPISKEGTERLVRSAIEYAIKEGRKSLTLVH
                     KGNIMKFTEGAFKNWGYDLCEREYGDKVFTWNEYDRIKEAEGTEVADAKQKEALAAGK
                     ILVKDSIADIFLQQILTRPAEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYLT
                     GHAIFEATHGTAPKYAGLDKVNPSSVILSGTLLLEHIGWGEAAALINQSMEKTIAAKT
                     VTYDFARLMDGATEVKCSEFADELIKNF"
     gene            3206..5833
                     /gene="polA"
                     /locus_tag="U0280_000811"
     CDS             3206..5833
                     /gene="polA"
                     /locus_tag="U0280_000811"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEM2270766.1"
                     /translation="MNKLVLIDGNSIANRAFYALPLLNNDKGVYTNAVYGFAMMLMNV
                     LEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQY
                     ELANYEADDIIGTLTKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNT
                     PETLKEKYNLTPQQIIDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHA
                     EEISGKKLKEKVLENKELAILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEM
                     NFTTLLKNIEGDTPEETKELKELSFEIVTELKEKHFGGKTALYVELENDNYHTANFIG
                     LTVHSSQGTYFFTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNRIGLAISGITFD
                     IMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESIVAAHLARKA
                     VAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAG
                     RLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGK
                     HAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQN
                     IPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHT
                     KTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFV
                     SYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGS
                     AADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE
                     LSVPLKVDSAFGDTWYDAK"
     gene            5857..6678
                     /gene="mutM"
                     /locus_tag="U0280_000812"
     CDS             5857..6678
                     /gene="mutM"
                     /locus_tag="U0280_000812"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEM2270767.1"
                     /translation="MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDEFVH
                     MLVGQEIEGVRRRGKFLLFDLTNCTILSHLRMEGKFRLMDEKEEVSKHTHIIFHFEDH
                     TELRFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTSTDFATGVKKTSRAIKT
                     ALLDQKLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFEATKSIMTEAVALGG
                     STVRTYVNSQGKLGQYQDKLKVYGKTDEPCVVCGKPIEKIKLNGRGTHFCPNCQK"
     gene            6695..7297
                     /locus_tag="U0280_000813"
     CDS             6695..7297
                     /locus_tag="U0280_000813"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEM2270768.1"
                     /translation="MGKTIGLTGSVATGKSTVSNMIQQAGIPLVDADIAARKVVERGT
                     EGLKEIVAYFGEEILLADGTLNRAKLGEIIFKDKEKREKLNEITHPRVKDYMLEARER
                     FFEAGEELVFFDIPLLFESHLESLVDKIVVVWTTPETELKRLMERNNLTKEDALRRIE
                     SQMGIDEKARKADFVIDNNESLEKTQKQVLTFIKRFVKNK"
     gene            7375..7839
                     /gene="nrdR"
                     /locus_tag="U0280_000814"
     CDS             7375..7839
                     /gene="nrdR"
                     /locus_tag="U0280_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HEM2270769.1"
                     /translation="MRCPTCQYNGTRVVDSRPADDGNSIRRRRECEKCGFRFTTFEKV
                     EESPLIVVKKDGAREEFAREKVRRGLIRACEKRPVSAEQIEEIVNEVERELRNIGDSE
                     IASDLIGEKVMNKLANLDEVAYVRFASVYRQFKDISVFVEELKDLMEKNKDR"
     gene            7845..9221
                     /locus_tag="U0280_000815"
     CDS             7845..9221
                     /locus_tag="U0280_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation and membrane attachment
                     family protein"
                     /protein_id="HEM2270770.1"
                     /translation="MTEFWMELQAVDSYQVKASGILTGADRKIITMLYQPLMGAECLA
                     LYQTLFTEVEENRLWSEAHSHVQLLNMLDISLKALFEARLKLEGLGLLKSYVKTENDQ
                     RFYIYEILPPLSPEKFFSDGLLNIYLYSKIGNAQFQRLRRFFADEAFDTATYSEITRS
                     FQDVFEPFKGGSSAVTTETSQKLLDKVTPKEIEFDDASFDFNLFLSLLSPGMIAREKI
                     TKEVRQTILKLHGIYQVSEKDMPSYLYRALDANGEIDIVYLRKIVREGYTIEHGAPPK
                     LQMKQETPVDKEPEESLNDEEALQVYLESITPFQLLVDISDGAVPAETDLRVVEEVMN
                     QQNLPVPVMNVLIEYVLLRLDRKLSKNYMMTIAAHWKRKNVKTAKEAMDLAWQEHEKY
                     KRLQEEPATPKTNNYNRNYQKTTRKEILPDWFDKEQVAPAENKMTDKEKQTLEEQVRE
                     IKERLNKR"
     gene            9231..10154
                     /gene="dnaI"
                     /locus_tag="U0280_000816"
     CDS             9231..10154
                     /gene="dnaI"
                     /locus_tag="U0280_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HEM2270771.1"
                     /translation="MDNIERTLGQLFEGRDFEKEYQGLKQQVLHYQPIQDFFKEHKEE
                     VTEQLVNQNLSNLYEFMTQHKKFTEQEETIMPGYAPKLVLNGEFITVTYYPTKEKIEE
                     DKRRAVERRIRSLYMPKQVVDANLADFYTDEESRQLALVEAYQFLNNYPPKSGERVKG
                     LFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPEFMREVKQSISDNTVGEKIQFAK
                     ETEVLMLDDIGAESMTAWTRDEVLGAILQFRMQEELPTFFSSNYNMDQLENHLMFAQN
                     GTEEKLKARRIMERVRYLSKEVNLEGKNRRF"
     misc_binding    10205..10435
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            10504..12426
                     /gene="thrS"
                     /locus_tag="U0280_000817"
     CDS             10504..12426
                     /gene="thrS"
                     /locus_tag="U0280_000817"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEM2270772.1"
                     /translation="MKITFPDGAVKEFEPGVSTADIAASISPGLKKKALAGKLNGELL
                     DLVTPIHEDGAIEIVTPDHEDALGILRHSTAHLMAQALKRLYPDVKFGVGPAIESGFY
                     YDIDTEAVISDESLVEIEKEMQKIVRENVPIEREVVSREEAIKRFKAIGDQYKLELIE
                     AIPEDETVTIYTQGEFFDLCRGVHVPSTGKIQVFKLLSVAGAYWRGDSNNKMLQRIYG
                     TAFFDKNGLKEFIQMQKEAKERDHRKLGKELDLFANSIEVGQGLPLWLPKGATIRRVI
                     ERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNC
                     PHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQ
                     IKDEFKRVVELILEVYKDFDIKDYSFRLSYRDPKNTEKYFDDDAMWEKAQAMLKSAMD
                     EMEMDYFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLDFLLPERFDLTYIGEDGEK
                     HRPVVIHRGVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNADAHLDYAKGVQDK
                     LQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETM
                     DLDAFIAQVVAEVSKY"
     gene            12534..13118
                     /locus_tag="U0280_000818"
     CDS             12534..13118
                     /locus_tag="U0280_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEM2270773.1"
                     /translation="MDVNNVELIISAVRPEQYPETDLPEYALAGRSNVGKSSFINTMI
                     RRKSMARISQKPGKTQTLNFYKIEEALFFVDVPGYGFAKVSKTEREKWGVMIETYITS
                     REQLRGVIQIVDLRHKPTEDDRMMYEFLKYYDIPVIVVATKADKIPRSKWQKNAKIVR
                     ETLDFDPDDKFVLFSSETKMGKDEAWQFIKEGME"
     gene            13246..14553
                     /locus_tag="U0280_000819"
     CDS             13246..14553
                     /locus_tag="U0280_000819"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEM2270774.1"
                     /translation="MFILTMGLNHHTAPIDIREKLVFKESEEEMALVTLQQEKSILEN
                     VIISTCNRTEIVAVVDQIHTGRYYLKRFMANWFQMDMEKIEPYLFFHEESDAVNHLYK
                     VTAGLDSLVLGETQILGQVKHAFEIAKQTATTGTLLNKLFREVVTFAKKVHHHTKINE
                     NAVSVSYAAVEVAKKLYGSLDNKKIVLVGAGEMSELALQNLAGSGIADITIINRTKSN
                     AELLANQFQAKVGAYENMNEHLMLADIVLVSTSAAEPIIKQAAMQDLMEQKASSMLVI
                     DIGLPRNVEHDCSYIPNFHLYDIDDLAGVVSANSLERQRIVLELEKTIEAEVRNFFEW
                     EKQLGVVPVIRALREKALDMQEVTMTSLENKLPGLTEREYIQIGKHMKSIINQMLKQP
                     ISELKEMSVEEDATTSIEHFKRIFGLSETDVTVIEKEQAETRS"
     gene            14557..15486
                     /gene="hemC"
                     /locus_tag="U0280_000820"
     CDS             14557..15486
                     /gene="hemC"
                     /locus_tag="U0280_000820"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEM2270775.1"
                     /translation="MKRKIIVGSRRSKLALTQSNWVINKLKENYPEFDFEIKEIVTKG
                     DRILDVTLSKVGGKGLFVSEVEQALSDEVIDFAVHSMKDVPSSLKEGLIIGAIPKRES
                     PLDCFVFNRVNSLDELPQGSVIGTSSLRRAAQLLKHRPDFVIKPIRGNIDTRLQKLHA
                     ENFDAIILAKAGLARMGWLENTTLKLEDIPPELCLPAVGQGALAIECRESDQQIRDML
                     TSIHHEETGICVEAERVFLKKLNGGCEIPIAGFATRANEVVHFKGLVGNADGSIILAS
                     EQAGANPSEIGNKVAEDLLSEGADTIIKELRNI"
     gene            15483..16205
                     /locus_tag="U0280_000821"
     CDS             15483..16205
                     /locus_tag="U0280_000821"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEM2270776.1"
                     /translation="MSKKVVLTREANKNKPWQTYFSQNGFEVTSIPLIKTRPIKMDLS
                     REQQQTDWLFLTSANAVEYFFTNQHERFNYKIAVIGEKTKEKLAEFGHEPNFVPSIYQ
                     SEVFLEEWLNENPEKTSILIPQSNLSRTIIKDRLIEKGYIVVSFELYETIFPENSKIR
                     LIEQLKLNETQIIVFASPSAWKNFYSTAKSFPAQKEKWHIASIGSITTEAIIADGWEV
                     KYQPKTFTMKHLADLIIQEELK"
     gene            16202..17176
                     /gene="hemB"
                     /locus_tag="U0280_000822"
     CDS             16202..17176
                     /gene="hemB"
                     /locus_tag="U0280_000822"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEM2270777.1"
                     /translation="MKNQFDRHRRLRKTKTMRDLVRETVLHTDDLIYPIFVKDGKEPK
                     TEVASMPGVFQYPLHELEEEMRVVESLGIKAVILFGIPAEKDAVGTQAYHDHGIIQEA
                     TRLIKKSFPEILVVADTCLCEFTDHGHCGVIENGEILNDESLELLKQTAVSQAAAGAD
                     IIAPSNMMDGFVQVIREGLDEAGFYDIPIMSYAVKYASAFYGPFRDAAGSAPQFGDRK
                     SYQMDPANREEALREAMSDEQEGADFLIVKPSLSYLDIMRDVKNNTNLPVVAYNVSGE
                     YAMVKAAAQNGWIDEEKIVLEMLTSMKRAGATLIITYFAKDASKYLNK"
     gene            17189..18478
                     /gene="hemL"
                     /locus_tag="U0280_000823"
     CDS             17189..18478
                     /gene="hemL"
                     /locus_tag="U0280_000823"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEM2270778.1"
                     /translation="MQNYSKSEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKG
                     AYITDVDGNEYIDYVLSWGPLILGHADPAVVNAITKAALKGTSFGTPTEIETELAKLV
                     IERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGV
                     ATLGLPDSPGVTKGLAADTITVPYNDIEGAELAFQKYGEEIAAVIVEPVAGNMGVVPP
                     IDGFLEGLRELTTKFGSLLIFDEVMTGFRVDYYSAQGYYVVTPDLTCLGKVIGGGLPV
                     GAYGGKKEIMEQIAPAGSIYQAGTLSGNPLAMNAGFETVRQLTPQHYDVFRTLIKRME
                     EGLTEISARRQVPLSINKAGSMFGFFFTDQKVINFDTAKTSNLEFFRNYYREMLGQGI
                     FLPPSQFEGVFISTMHTEKEIDKTLEAFDTTCKILRG"
     misc_binding    18526..18753
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            18802..21453
                     /locus_tag="U0280_000824"
     CDS             18802..21453
                     /locus_tag="U0280_000824"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEM2270779.1"
                     /translation="MTIEHNEINMPTKYEPSNVEAGKYKWWLEKEFFKAEGNTDKKPY
                     SIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGFDTLYLPGMDHAGIATQAKVEAK
                     LKESNVSRYDLGRENFVDKTWEWKEEYAEFIREQWEKLGLGLDYSRERFTLDDGLSDA
                     VKKVFVTLYNKGLIYRGQYIINWDPEAKTALSDIEVIHKDIEGSFYHLKYPLTDGSGY
                     LEVATTRPETIPGDTAVAVHPKDERYQHLIGKTIMLPILNREIPIVADEYVEREFGSG
                     AVKITPAHDPNDFEVGNRHELPRIIVMHEDGTMNKNAGKYDGLDRFVARKEIIQDFKD
                     LGLFIKQEPHLHSVGHSERTGAVVEPYLSLQWFVKMEPLAAEALELQKTENKVNFVPA
                     RFEKTYETWMDNIHDWCISRQLWWGHRIPAWYHKETGEIYVGESEPENLSEWEQDEDV
                     LDTWFSSALWPFSTMGWPDTENPDFQHFFPTNTLVTGYDIIFFWVSRMIFQSVEFTGE
                     RPFKDTLIHGLVRDSEGRKMSKSLGNGVDPIEVIDKYGADSLRYTLATGSSPGQDLKF
                     SYEKVESTWNFINKIWNASRFVLMNLDGMKYNEIDLSNVTEVSDKWILTRLNETIQAV
                     TSLGEKYEFGEVGRTLYNFIWDDFCDWYIEIAKIPLYGEDEVAKQTTRSVLAYTLNAT
                     MRLLHPFMPFVTEEIWQNLPHEGESITIAEWPKVNEQQIDTKSSTAMATLVEVIRAVR
                     NIRSEVNTPLSKPIVLEIKPKDTTYKEILEQNISYIERFCNPEQVTISFDVEASKTAM
                     TAVVSGAEIFIPLEALIDLNVEIARLEKELEKWNKEVARVQGKLNNERFISKAPESVV
                     AEERLKEKDYLDKKASVLERIETLKEV"
     gene            21515..>22579
                     /locus_tag="U0280_000825"
     CDS             21515..>22579
                     /locus_tag="U0280_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM2270780.1"
                     /translation="MTLNSYEEALDWIHGTLRLGIKPGLARMEYMMEKLNHPEKANKW
                     VHIAGTNGKGSTLTFVRNALEEAGYRTGTFTSPYIEVFNERISINGEPISDEMIVSLA
                     NRIKPIAEELEKTIYGPPSEFEIITAMMFLCFAEYVSIDIGIIEVGLGGRLDSTNILV
                     PLISVITTIGMDHMEFLGDTIEQIASEKAGIIKPGIPVVSGAIQKEAQEVIAKIAKKN
                     KSNVAQLNETFFMHNENGNITYKTIYGEEISNLSIGLLGLHQLNNAAVAIKVLQYLNT
                     FSTFEIGLAAIKKGLEKAFWPGRMEKIISNPFIMLDGAHNPEGIKTFAHSIQKYSGPK
                     KIIVSILADKNYQEMLGMLKS"
BASE COUNT         7740 a         3672 c         4831 g         6336 t
ORIGIN      
        1 aaaactttct atagaggttt cattgaaaaa agggcaattc attttcctta tggcatttta
       61 gtattactat aaggtatgtt tatgatataa taattgttat ctcgcttcct agatgcgtga
      121 tattgaaagg tgacttaata tgtttacgga aagtatgttg tttttacttc tttttttact
      181 tctcggactt atagcaaaaa ataattcgct tatcattgct gtagctgtcg ttattttgtt
      241 gaagttattt cacgtcgatg gcaaagcaat ggaaatgatt caagcaaaag ggataaattg
      301 gggtgtaacg attattacgg ttgctatctt aattccaatc gcaactggtc aaatcggttt
      361 taaagattta attgattctt tcaaatcggc agctggctgg attggccttg gtgcaggaat
      421 tgccgtttct atcttagcga aaaaaggtgt aggctatatg gccgttgatc cacaagtgac
      481 tgtctcacta gtattcggga ccattttagc agtggtgctt tttagaggga ttgctgctgg
      541 accagtaatt gcagctggta ttgcgtacat ggcaatgcag ttagttgcat tcataaaata
      601 agtacatacg taaaaaagga taaaaggagg aaatgaaatg acgttatcta aaggcttaga
      661 aaatgtatat gttgctgaaa cttccattag ctctatcatt gatgatatgt taacttatgt
      721 tggctatggt attgacgatt taatggaaaa taacgcttct tttgaagaag tgatttactt
      781 attatggcat ttacgtttgc cgaataaaga tgaatttaaa aaatttaaac gagaaatcca
      841 agaaaatatg gcagtgtctg aaacaatcat tacgagctta agaatgcaaa atcaccaaaa
      901 attacatccg atgagtgttt taagaactac agtttctatg ctcggtgtat ttgatacaga
      961 agctgaatta gacgacgggg aagcagttta ccgtaaaggt ttgcgacttc aagcgaaaat
     1021 gccaaccatt gttgccgctt tttccagaat tcgtcgcgga ctcgatccaa ttccaccgag
     1081 agaagattta aatatggcag caaatttcct atatatgatt acaggagaag aagcagatgc
     1141 attatcagta gaagcaatga ataaagcgct cgtactgcac gctgatcacg aatttaatgc
     1201 gtctactttt acagcgcgag tttgtgtggc aacgctttcg gatgtttatt ccggcgtaac
     1261 agctgcaatc ggtgcgctga aaggcccgct tcatggtggt gccaatgaac gcgtatttga
     1321 tatgttagaa gaaattgacc aagctggtga tgtgcgtaat tacattcaag aaaaaattga
     1381 tacgaagcaa aagattatgg gatttggtca ccgtgtttat cgcggcggag atcctcgtgc
     1441 gcaacatttg cgtgaaatgt ccagaaagtt aactgctgaa aaaggcgaag agaaatggtt
     1501 tgatatttcg ctgcaagtag aagaatctgt ttgggaattg aaacacttaa aaccgaatgt
     1561 cgatttctat tcagcctccg tttatcatgc gcttggtatt gaccgcgact tgtttacgct
     1621 tgtgttttct gtgagtcgtg tatctggttg gttagcacac attttcgagc aataccgtga
     1681 taatcgtctt attcgtccgc gtgcaattta cgttggacct gaaaatagaa gttatttacc
     1741 tgtagaagaa cgaatttaat cgaggaggaa caaactttat gagtcaaaaa attcaagtag
     1801 aaaacggtgt gctcaaaaca ccaaacaacc cagtcattcc ttttattgaa ggggacggaa
     1861 ctggttcaga catctgggca gctgcaaaac gcgttttaga tgccgcagta aaaaaagctt
     1921 acaatggcga aaaagaaatt gcttggaaag aagtattagc tggtgaaaaa gcatttaaac
     1981 aaacaggaga atggttacca caagcgactt tagatacaat tgatgaatat ttgattgcta
     2041 ttaaaggacc gcttactact ccaatcggtg gaggcattcg ttcgttaaac gttgccctgc
     2101 gccaagagtt agatttatat gtttgtttac gtccagttcg ttatttcaaa ggcgttcctt
     2161 caccggtgaa acgtccggaa gacacagata tggtcatttt ccgtgagaat acagaagata
     2221 tatatgcagg gattgaattt aaagaaggca gcgaagaatc aaaaaaacta atcgacttct
     2281 taaaatctga gtttggcgtt gacaaaattc gtttcccgga aacttctggt attggtatta
     2341 agccaatttc caaagaggga acagagcgtt tagtgcgttc ggcgattgaa tatgcaatta
     2401 aagaaggtcg taaatcatta acgcttgtac acaaagggaa tatcatgaaa ttcacagaag
     2461 gagctttcaa aaattggggc tatgacttat gtgaacgcga atatggcgat aaagtattta
     2521 cttggaatga gtatgatcgc attaaagaag cagaaggaac agaagttgct gatgcgaaac
     2581 aaaaagaagc gcttgctgct gggaaaattt tagtcaaaga ttcgattgcg gatattttct
     2641 tgcaacaaat cttaactcgc ccggctgaat ttgatgtagt tgctacaatg aacttgaatg
     2701 gagattacat ttctgatgca cttgctgctc aagtaggcgg aatcggtatt gctccaggag
     2761 caaacattaa ctacttaact ggccatgcaa ttttcgaagc gacgcatggt actgcaccga
     2821 aatatgcagg tcttgataaa gtgaatcctt catcagttat tttatctggg acacttcttc
     2881 ttgaacatat tggttggggt gaagcggctg cattaattaa tcagtcaatg gaaaaaacaa
     2941 tcgctgcgaa aaccgtaact tatgattttg ctcgattaat ggatggtgcg acagaagtta
     3001 aatgttcgga atttgcagat gaattaataa aaaatttcta aaacaatcta ttttaacttc
     3061 taaaactagt ctgtattttt atttttaacc ataaatatac gtttttaaaa caaaccattt
     3121 aatcccattc ggataagtgg tttgttttta tgttcctatg gtaaaataga cacaagtgaa
     3181 tgacaatatc gaggaggata tccctgtgaa taaattagta ttaattgatg gaaatagtat
     3241 tgcgaatcgc gccttttatg ctttaccgct tttaaataat gataaaggtg tttacacaaa
     3301 tgcggtgtat ggtttcgcaa tgatgttgat gaatgtactc gaaaaagaaa aacctagcca
     3361 tgtgctcgtt gcatttgatg ctgggaaaac aactttcaga catacaacat ttaaaggtta
     3421 taaaggcgga cgtcaaaaaa ccccaagtga gttatctgaa cagtttccat tcatccgaga
     3481 acttttaacg gcgtatgata tcccgcaata tgaacttgcc aattatgagg cagatgatat
     3541 tatcggaaca ttgacgaaaa aagcggaagc agacggaatg gaagtagcaa tcattaccgg
     3601 agaccgggac ttaacgcaat tagcttctga aaaaacaacg gtttatatta ctaaaaaagg
     3661 catagccgat atggaaacca acacaccaga aacactaaaa gaaaaataca atctgactcc
     3721 tcaacaaatc attgatatga agggtttaat gggtgattcc tccgataata ttcctggtat
     3781 tccaggcgtt ggtgaaaaaa ctgccttaaa actcttacat gaatttggtg gaacggtgga
     3841 aagtgtgtta gagcatgccg aggaaatttc cggtaaaaaa ctaaaagaaa aagtactgga
     3901 aaataaagaa ttagctattt taagtaaaga gttagctaca atcaatgtgg attcaccgat
     3961 tgaatgcacg gtcgaaagca cgaaatacga cggctatcaa acagaaaaag ttatcccttt
     4021 attaaaagaa atgaatttta caacactttt gaaaaatatc gagggagata caccagaaga
     4081 aacgaaagaa ctaaaagagt tgtcttttga aatcgtaaca gaattaaaag aaaaacattt
     4141 tggtgggaaa accgcgcttt atgtggagct agaaaacgat aattaccata cagctaattt
     4201 cattggatta acagtacatt ctagccaagg gacgtatttc tttacaaaag aaacagccga
     4261 aagtagtgag gtattccgca aatgggtaga aagtgatcaa acaaaagtag tgtacgatgc
     4321 gaagaaaaca atggttgcaa tgaaccgcat tggtttagcc atttctggta tcacctttga
     4381 tatcatgtta gcatcttact tgctaaatcc atctgattcg attgatgact ttacaagtgt
     4441 tgcaatacga catgattaca cagaagtaga aacagatgaa gcagtctacg gaaaaggtgc
     4501 taaacgtagc actcctgaag aaagcattgt tgcggcacac ttagctagaa aagcagtggc
     4561 tattgctgac ttagagaaaa gactagttga tgatttagaa gaaaatgaac aactagcttt
     4621 gatggaagac cttgagctac ctctaacttt tgtattagca gaaatggaaa tgcaaggggt
     4681 tagtgtagat acagaacgtc tagagaatat gaaagtggag ctagcgggta gactgaaaac
     4741 attggaagag tcgatccatt ctctagccgg cgaagaattc aatattaatt caccgaaaca
     4801 actaggtgtg attttatttg aaaagcttgg tctcccagct gtcaagaaaa caaaaacagg
     4861 ttattcaacg gctgccgatg tactggaaag tttatctggt aaacacgcga ttattgatga
     4921 aattttgtta tatcgtcaac ttggtaaaat tcagtccact tatatcgaag ggctgcttaa
     4981 agtgacagat aaagaaacac ataaagtaca cacacgtttc aaccaaacat taacgcaaac
     5041 aggacgctta agttcagttg atccgaactt gcaaaatatc cctattcgtt tagaagaagg
     5101 acggaaaatt agacaagttt tcgtaccgag taaaccaggt tggaaaatgt tttcagccga
     5161 ttattctcaa gtagagctga gagtcttagc acatatttcg gaagatgaaa atttaattta
     5221 tgcatttaag cacgattatg atattcatac gaaaacggcg atggacgtgt ttcatgttga
     5281 gcaagacgaa gtggattcat taatgcgtcg tcaggctaaa gcggtaaact ttggtattgt
     5341 atatggaatt agtgattatg ggctttcgca aaatcttggt attacgcgta aagaagcaaa
     5401 agactttatt gatcgttatt ttgtgagcta tccagccgtg aaagaatata tgcaagacat
     5461 cgttcgtttt gcgaaagaaa aaggctatgt agagaccatt ttacatcgtc gtcggtatat
     5521 tccagagatt gtcagtcgta attttaatgt tcgcggattt gcagaaagaa cggcgatgaa
     5581 cacgcctatt caaggtagtg ccgctgatat tatcaaaaaa gcgatgattc tgatgagcga
     5641 gcgtttagta tctgaaaaat tagaagcaaa attattacta caagtacacg atgaattaat
     5701 cttcgaggcg cctgaagctg aaatcgctaa attagaagaa attgtcccag atgttatgga
     5761 aaatgcagta gagctttctg taccgctaaa agtagatagc gcatttggtg acacttggta
     5821 cgacgcgaaa taaatagaga aacggggagt ttatatatgc cagaaatgcc ggaagtagaa
     5881 aatgtccgcg caactttaca agaattagtc ccaggtaaaa aaatagatca agtaattgtt
     5941 cgtgttccaa aaatgattgt atcaacacca cccgatgagt ttgtgcatat gcttgtcggg
     6001 caagaaatag agggtgtacg ccgtcgtggt aaattcttac tttttgactt aaccaactgt
     6061 acgattttat cgcatttacg aatggaaggt aaatttcggt taatggatga aaaggaagag
     6121 gttagcaagc atacgcatat tatttttcat tttgaagatc acacggaatt gcgtttttta
     6181 gatgtgcgaa aatttggcac gatggaagta acaaataaat acggtgaggg tgaaacgcgg
     6241 tcgattaaaa agcttggccc agaaccgctg acgcaagcct ttacatcaac ggattttgcg
     6301 actggtgtaa aaaaaacaag ccgcgccatc aaaacggctt tacttgatca aaagttagta
     6361 gccggagtag gaaatattta tgcggatgaa atttgttttg aagcaaaagt gcgcccggaa
     6421 agagcagcta actcactttc agacaaagaa atcaaacgta tttttgaagc gacgaaaagt
     6481 attatgactg aagctgtagc acttggtggc tccactgtca gaacatatgt aaattcgcaa
     6541 gggaagcttg gacaatatca agataaatta aaagtatacg gcaaaacaga cgaaccgtgt
     6601 gttgtttgtg gaaagccaat tgaaaaaatt aaattaaacg gacgcgggac acatttttgc
     6661 ccgaattgcc aaaaatagaa agcgagctga aatcatgggg aaaacgattg gattaacagg
     6721 aagtgtagca acagggaaat caacagtgag caacatgatt cagcaagcgg gtattccatt
     6781 agtagatgca gatattgctg ctagaaaagt agtggagcgt ggcacagaag gactaaaaga
     6841 aatcgttgct tattttgggg aagaaatttt acttgcagat ggcacattaa atcgagctaa
     6901 attaggagaa attattttta aagataagga aaagcgtgaa aagttaaatg aaattacgca
     6961 tccacgtgtg aaagactata tgttggaagc gcgcgaacgt ttttttgaag caggagagga
     7021 gcttgtcttt ttcgatattc cgcttttgtt tgaaagtcat ttagaatcgt tggtggataa
     7081 aatagttgtt gtttggacca cccctgaaac agagttaaaa cgcctgatgg agcgaaataa
     7141 tctaacaaaa gaagatgcat taagaagaat tgaaagccaa atgggaatcg atgaaaaggc
     7201 gagaaaagct gattttgtca tcgataataa tgaatcactt gaaaagacac aaaaacaagt
     7261 tcttacattt atcaagcgtt ttgtaaagaa caaatagcca cccttacttt cacatggtat
     7321 aatgaggcat acaaataaac agatagagaa agctagagat aggagtgagt ttttgtgaga
     7381 tgtcctactt gtcaatataa tggtacacgt gttgtagact caagaccggc agatgatggc
     7441 aattccatcc gaagacggcg tgaatgtgaa aaatgcggat ttcgttttac tacttttgaa
     7501 aaggtagaag agagtccttt aatagttgtg aaaaaagatg gagcaagaga agaattcgct
     7561 cgtgaaaaag tgcgacgcgg cttaataaga gcatgtgaaa aacgaccagt tagcgctgaa
     7621 caaattgaag aaattgtcaa tgaggtagaa cgtgaactgc gaaatattgg agacagtgaa
     7681 atcgcgtctg acttaattgg tgaaaaagtg atgaataaat tagcgaatct cgatgaagta
     7741 gcctacgtgc gcttcgcttc ggtgtatcgc caatttaaag atattagtgt gtttgtcgaa
     7801 gagttaaaag atttaatgga aaaaaataaa gataggtgag taaattgacg gaattttgga
     7861 tggagcttca agcggtagac agctatcaag taaaagcaag tggaatcttg accggcgccg
     7921 acagaaaaat tattacgatg ttatatcaac cgctaatggg ggcggagtgt cttgctttat
     7981 atcaaacact gttcacagaa gtcgaagaaa acagactttg gtcagaagcg cattcgcacg
     8041 tccaactttt aaatatgctt gatattagtt tgaaagcgtt attcgaggca aggctaaaat
     8101 tagaaggctt aggtctttta aagagttatg tgaagaccga aaacgatcaa cgcttttata
     8161 tttacgaaat cttgccaccg ttatcaccag aaaagttttt ttcagatggt ctattaaata
     8221 tttatttata tagcaaaatt ggcaatgctc agtttcaacg tttgcgtcgt tttttcgcag
     8281 acgaggcatt tgacacagct acatacagtg aaatcactcg ttcgtttcaa gatgttttcg
     8341 aaccgtttaa aggtggtagt agtgcagtta cgactgaaac tagtcaaaag ttactagaca
     8401 aagtgacgcc aaaagaaatt gaatttgatg acgcgagttt tgactttaat ttgtttttga
     8461 gcttgctttc accgggaatg attgctcgcg aaaagataac aaaagaagta cgccaaacga
     8521 tattaaaact tcacgggatt tatcaagttt ctgaaaaaga tatgccgagt tatttgtatc
     8581 gtgcgcttga tgcaaatggt gaaatcgaca tcgtttattt gcgtaaaatc gttcgtgaag
     8641 gctacaccat cgaacacggt gcgccgccaa aactgcaaat gaagcaggaa acgcctgtcg
     8701 ataaagaacc agaagaatcg ttaaatgatg aagaagcgct gcaagtatat ttagagagca
     8761 tcacgccttt tcaacttttg gtagacattt cagacggggc agttcccgct gaaaccgatt
     8821 tgcgcgttgt agaagaagtc atgaaccagc aaaatttacc agttcctgtg atgaatgtgc
     8881 tgattgagta cgtgttactc cggcttgacc ggaagctttc taaaaattac atgatgacga
     8941 ttgctgctca ctggaaacga aaaaatgtaa aaacagcaaa agaagcaatg gatctagcgt
     9001 ggcaagagca cgagaaatac aaacgacttc aagaagaacc agccacacca aaaacgaata
     9061 attacaaccg aaattatcaa aaaacaacgc gaaaagaaat tttgccggat tggtttgata
     9121 aggagcaagt tgctccagcc gaaaataaaa tgacagataa agaaaaacaa acactcgaag
     9181 aacaagttcg tgaaattaaa gaacgactaa ataaaaggta ggtgaagaag atggataaca
     9241 tcgaaagaac attaggacag ctttttgaag gccgcgactt tgaaaaagaa taccaaggtt
     9301 taaaacaaca agttctccat tatcaaccaa ttcaagactt tttcaaagag cacaaagaag
     9361 aggttaccga gcaattagtt aatcaaaatt tgtctaattt atatgaattt atgacgcaac
     9421 acaaaaaatt cacggaacag gaagaaacta taatgcctgg ttatgcacca aaacttgttc
     9481 ttaatgggga attcatcact gtcacctact atccgacgaa agagaaaata gaagaagata
     9541 aacgccgtgc agttgagcga agaattcgtt ctctttatat gcctaagcaa gtagtggacg
     9601 cgaacttagc ggacttttat accgatgaag aatcgcgtca attagcgctt gtggaagcat
     9661 atcaattttt aaataattat cctccgaaaa gtggggaacg tgtgaagggc ttatttattc
     9721 atggtagctt tgggactggg aaatcctatt tgttaggggc ccttgcgaaa gaacttgctt
     9781 taaaaggtat ttcaactaca cttgtttatt tacccgagtt catgcgcgaa gtgaaacagt
     9841 ctatttctga caatacagtc ggtgaaaaaa ttcaatttgc gaaagaaaca gaagtattga
     9901 tgctcgatga tattggcgca gaatcgatga ccgcttggac gcgagatgaa gtgttgggtg
     9961 cgattttgca attccggatg caagaggaat taccaacttt cttctcatca aattacaaca
    10021 tggatcaact agaaaatcat ttaatgtttg cccaaaatgg tacggaagaa aaactaaaag
    10081 ctcgccgaat catggaacgg gtgcgctatt tgtcgaaaga ggttaactta gaagggaaaa
    10141 atcgccgttt ctaaaaagta cttgcaaata tgtttaatcg ggcttataat ttgaagtaat
    10201 ataaaacaaa gtgatgaaaa ggacaaccga tttaacggaa aattttagag aggaagggct
    10261 agctgggaac cttctattgg aacttaaatt tggaccacct tggaacttct attaggaacg
    10321 tgtttaacta gtaataatag acggatcgct ccgttataag cgacaagagt gaagtagtta
    10381 tttttagcta tttctgaatc ttgggtggaa ccacgagcat aaactcgtcc cttgacaaca
    10441 ggagggatgg gttttttatt ttgccctcct aaccacacta aaaaaagaaa aggagagatt
    10501 agtatgaaaa tcacatttcc agacggtgca gtaaaagaat ttgagccagg cgtttcaaca
    10561 gcagatattg ctgcttctat cagcccaggg ctaaaaaaga aagcactcgc aggtaaatta
    10621 aacggggagt tacttgattt agtaacacca atccacgaag acggagcaat cgaaatcgta
    10681 acaccagacc atgaagatgc gcttggtatt ttgcgtcaca gtacagctca tttaatggct
    10741 caagcattga aacgccttta tccagatgtg aaatttggtg ttggcccagc gattgaatct
    10801 ggtttctatt atgatattga tacagaggca gttattagcg atgaatctct tgttgaaatt
    10861 gaaaaagaaa tgcaaaaaat tgtgcgtgaa aatgttccaa ttgagcgcga agttgtttct
    10921 cgcgaagaag caattaaacg tttcaaagca attggagatc aatataaatt agaacttatc
    10981 gaagcaatcc cagaagatga aacagtgaca atttatacac aaggtgaatt tttcgacctt
    11041 tgtcgcggag tccatgttcc ttctactggt aaaattcaag tgttcaaact acttagcgtg
    11101 gctggtgcat actggcgtgg cgatagtaac aacaaaatgc tacaacgcat ttacggcaca
    11161 gctttcttcg ataaaaatgg cttaaaagaa tttatccaaa tgcaaaaaga agcgaaagaa
    11221 cgtgatcatc gtaaactagg taaagaacta gatttatttg caaatagtat tgaagttggt
    11281 caaggtttac cactttggtt gccaaaaggt gcgactatcc gacgcgttat cgaacgatac
    11341 attgtggata aagaagaacg ccttggttac aatcacgttt acactccgat tatggctaat
    11401 gttgagcttt ataaaacaag cggccactgg gatcattacc atgaagacat gttcccaaca
    11461 atgaaaatgg acaacgaaga actagtttta cgtccaatga actgcccgca tcacatgatg
    11521 atttataaaa atgatatcca tagttaccgt gaactaccaa tccgtattgc cgagcttggt
    11581 atgatgcacc gttatgaaat gagtggggcg ctttcaggac ttcaacgtgt tcgtggaatg
    11641 actttaaatg atgcacacgt atttgttcgc cctgaccaaa tcaaagatga gttcaaacgg
    11701 gttgtagagc taattttaga agtatataaa gactttgata ttaaagatta ctccttccgc
    11761 ctaagctacc gtgatccgaa aaatactgaa aaatattttg acgatgatgc tatgtgggaa
    11821 aaagcgcaag ccatgcttaa atccgccatg gacgaaatgg aaatggatta ctttgaagca
    11881 gaaggtgaag ctgcatttta cggtccaaaa ctagatgttc aagtgaaaac tgcaatagga
    11941 aaagaagaaa cactttccac tgtacaactt gacttcttac ttccagaacg ctttgactta
    12001 acttacattg gcgaagatgg cgaaaaacat cgtccagttg tcattcaccg tggagttgta
    12061 tcgacaatgg aacgttttgt cgcatatcta atcgaagaat acaaaggtgc tttcccaact
    12121 tggttagctc cagtacaaat ggaacttatt ccagttaacg cagatgcgca tttagattat
    12181 gcaaaaggtg tacaagataa attacaacgc gctggacttc gtgctgaagt ggatgatcgt
    12241 aatgaaaaat taggctataa aatccgtgaa gcacaaacaa agaaaattcc ttatgcctta
    12301 gtattaggcg accaagaagt agaggctggt tctgttaatg ttcgtcgtta cggctctaaa
    12361 gactctgaaa caatggattt agatgcattt atcgcacagg ttgttgctga agtaagcaaa
    12421 tattaatcac gaaaatactg tctcttaaag ggggcagtat tttttcatgg tgcttttttc
    12481 ctctttttcc gttatactag taaaagataa tgaatagaac aggatggaaa attatggatg
    12541 taaataatgt agaactaata ataagcgctg ttcgaccaga gcaatatccc gagacagacc
    12601 ttccagaata tgcacttgca ggtcgatcaa acgttggaaa atcatctttt atcaatacga
    12661 tgattcgccg caaaagtatg gcaagaattt cacaaaaacc aggaaaaaca caaacactaa
    12721 atttttataa aattgaagaa gcacttttct ttgtcgatgt acccggttat ggtttcgcta
    12781 aagtttcgaa aacagaacga gaaaaatggg gcgtcatgat tgaaacctat attacttctc
    12841 gcgagcaact tcgtggtgtt atccaaattg ttgatttacg acataagcca actgaagatg
    12901 accgaatgat gtatgaattt ctgaagtatt acgacatccc tgtcatcgtc gtagcaacga
    12961 aagcagacaa aatcccacgc agtaaatggc aaaaaaatgc taaaattgtc cgagaaacac
    13021 ttgattttga tcctgatgac aaatttgtct tattttcctc tgaaacaaaa atgggaaaag
    13081 acgaagcatg gcagtttatc aaagaaggaa tggaataata gaaggagttg gaatgaaaaa
    13141 tccagctctt ttttccgtct aaatacataa acggactatt tggtgaacac atcgaaaagt
    13201 ggtagaatgt attagagttc aatttaattt taggaggatt atcgaatgtt tattctcacc
    13261 atggggctga atcatcacac agcaccaatc gacatccgcg aaaaattagt ttttaaagaa
    13321 agcgaagaag aaatggcctt agtaacatta cagcaggaaa aaagtatcct cgaaaatgtt
    13381 attatttcaa cgtgcaatcg aacagaaatt gttgcggttg ttgatcaaat acatacaggt
    13441 agatattact taaaacgctt tatggctaac tggtttcaaa tggatatgga aaaaatcgaa
    13501 ccttatttgt ttttccatga agaatcagat gctgtcaatc atttatataa agtaaccgcg
    13561 ggacttgatt cgttagtact gggagaaacg caaatcctcg gacaagtaaa acatgcattc
    13621 gaaatcgcca aacaaacggc tacaacaggt acacttttaa ataaactttt tcgggaagta
    13681 gttactttcg caaaaaaagt acaccaccat acaaaaatta atgaaaatgc tgtgtctgtc
    13741 agttatgccg ctgtagaggt tgcaaaaaaa ttatatggtt cattagacaa taagaaaatt
    13801 gtgctagttg gtgcagggga aatgagtgaa ctcgctttgc aaaatctcgc tgggagcggc
    13861 attgcagata taaccatcat caaccgtact aaatctaatg cagaattatt agcaaatcaa
    13921 tttcaagcaa aagtgggcgc atatgaaaat atgaatgaac atttgatgct agcagacatc
    13981 gttctcgttt cgacaagtgc ggcagaacct attattaaac aagctgctat gcaagatttg
    14041 atggaacaaa aagcgagttc gatgcttgta attgatatcg gtttacctcg aaatgttgaa
    14101 catgattgtt catacattcc caatttccat ttatatgaca ttgacgattt ggcaggggtc
    14161 gttagcgcga actcattaga gcggcagcga atcgttctgg aacttgaaaa aactattgag
    14221 gcagaagttc gtaacttttt cgagtgggaa aagcaactag gcgtcgtccc tgttattcgt
    14281 gctttgcgtg aaaaagcgtt agatatgcaa gaagttacta tgactagttt agaaaataaa
    14341 cttcctggac taacagaacg cgaatacatt caaattggaa aacatatgaa aagcattata
    14401 aaccaaatgc tgaaacaacc tatctcagaa ttaaaagaaa tgtctgtaga agaagatgca
    14461 actacaagta ttgaacattt taaacgtatt tttgggttga gtgaaacaga tgttactgta
    14521 atagaaaaag aacaagccga aacgaggagt taacggatga aacggaaaat aattgttggt
    14581 tctagacgaa gcaagttagc tttaactcag tctaattggg tgattaacaa gctcaaagaa
    14641 aattatcctg agttcgattt tgagataaaa gaaattgtta caaaagggga ccgtatttta
    14701 gatgtaacac ttagcaaagt aggcggaaaa ggtctatttg tatccgaagt ggagcaggct
    14761 ttaagtgatg aagtgattga ttttgcggta catagcatga aagatgttcc atcaagtttg
    14821 aaagaagggt taattattgg cgcgattcca aaacgtgaat cgccattaga ttgcttcgtt
    14881 ttcaatcgag tgaattctct agatgagtta ccacaaggct cggtcattgg tacaagtagc
    14941 ctccgtagag cggcacaact tctaaaacat cgacctgatt ttgtgattaa accgattcga
    15001 ggcaatatcg atacacgtct tcaaaaatta catgcagaaa attttgatgc aattatctta
    15061 gcaaaagctg ggttagctcg tatgggttgg ttagaaaata ctacgttaaa actagaagac
    15121 atcccaccag aattatgttt gccagctgtt ggacaaggtg cacttgctat cgagtgtcgc
    15181 gaaagtgatc aacaaatccg cgatatgtta acttctattc atcacgaaga aactggaatt
    15241 tgtgtagaag cagaacgtgt tttcttgaaa aaattaaatg gtggctgtga aattccgatt
    15301 gccggctttg ctacaagagc taatgaagtc gttcatttta aaggtttagt tggtaatgcg
    15361 gatggttcca tcattcttgc atccgaacaa gctggtgcaa atccaagtga aattggaaat
    15421 aaagtagcag aagatttgct aagtgaaggt gcagatacta ttatcaaaga actgagaaat
    15481 atatgagtaa aaaagttgtt ttaacaagag aagcgaataa aaacaaacca tggcaaacct
    15541 atttttcgca aaatggtttt gaagtgacgt caatcccgct gattaaaaca cgacctataa
    15601 aaatggattt gagtcgagaa caacaacaaa cagactggct ttttttaaca agtgcaaatg
    15661 ctgtagaata tttctttacg aaccaacatg aaagattcaa ttataaaata gctgtcatcg
    15721 gtgaaaaaac aaaagaaaaa ctggcagaat ttggtcacga accaaatttt gtcccatcta
    15781 tctatcagtc agaagtattt ttagaagaat ggctaaacga aaacccagag aaaacaagta
    15841 tcttaatacc acaaagtaat ttaagcagaa caataataaa agatagattg attgaaaaag
    15901 gttacatcgt tgtttcgttt gagctctatg aaacaatctt tccagaaaat tctaaaatac
    15961 ggttaatcga acaactgaaa ctaaatgaaa cacaaataat tgtttttgcc agcccatctg
    16021 catggaaaaa cttctattcc actgcgaagt cattccctgc tcaaaaagag aagtggcata
    16081 ttgcatccat tggtagtatt acaacagaag ccattatagc agatggatgg gaagtaaaat
    16141 atcaaccaaa aaccttcacc atgaagcacc tagctgattt gataatacag gaggaattaa
    16201 aatgaaaaat caatttgata gacatcgtcg tctaagaaaa accaaaacaa tgcgtgattt
    16261 agtaagagaa acagttttac atacagatga tttaatctat ccgatttttg ttaaagatgg
    16321 caaagaacca aaaacagaag tagcttctat gcctggggtt tttcaatatc ctttacatga
    16381 actagaagaa gaaatgcgcg tagttgagag ccttggtatt aaagcggtta ttttatttgg
    16441 tattcctgcc gagaaagacg cagttggcac gcaagcttat cacgaccacg gaattattca
    16501 agaagctaca aggcttataa aaaaaagttt tcctgaaatt cttgtggtgg ctgacacatg
    16561 tttatgtgaa tttactgatc atggacattg tggtgttatt gaaaacgggg aaattctcaa
    16621 tgacgaatcg cttgaattat tgaaacaaac agctgtcagt caagccgctg caggagcgga
    16681 tatcattgct ccatctaata tgatggatgg ttttgttcaa gtcattcgcg aagggttaga
    16741 tgaagcggga ttttatgata tcccaattat gtcatatgca gttaaatatg cgtctgcttt
    16801 ttatggaccg ttccgtgatg ctgctggtag tgcccctcaa tttggtgata gaaaatctta
    16861 tcaaatggat cctgccaatc gtgaagaagc tcttcgcgaa gcaatgtcgg atgaacaaga
    16921 aggtgcagat ttccttattg ttaaaccatc attatcatac ttagatatca tgcgcgatgt
    16981 taagaacaat accaatttac cagtagttgc ctacaatgtt agtggtgaat atgcaatggt
    17041 aaaagcagct gcgcaaaatg gttggataga tgaagaaaaa attgttttag aaatgctaac
    17101 aagtatgaaa cgagcgggtg caacacttat cattacttat tttgcaaaag atgcatccaa
    17161 atatttaaat aaataggagg taagaaattt gcaaaactat tcgaaatccg aaaaggcctt
    17221 taaagaagcc aaaaaagtct tacctggtgg tgtaaatagc cctgttcgag cattcaactc
    17281 tgtagatgcc tcgccagttt ttatggacca cggaaaaggc gcttatatta cagatgttga
    17341 tggtaacgaa tatattgatt atgtgttatc ttggggccct ctaattttag ggcacgctga
    17401 tccagctgtt gttaatgcta ttacaaaagc agctctgaaa ggtaccagct ttgggacgcc
    17461 tactgagatt gaaactgaat tagcaaaatt agtaattgaa cgtgtgccat ctattgaaat
    17521 tgttcgtatg gtttcatcag gaacggaagc aacgatgagt gctattcgtt tggctcgcgg
    17581 ttatacaaaa agagaaaaaa tcttgaaatt tgaaggaagt tatcacggac atggagattc
    17641 tttattaatt aaagctggtt caggggtagc aacactcgga ttaccggatt ctccaggagt
    17701 tactaaaggt cttgcggcag atacaataac agtcccatac aatgatattg aaggagccga
    17761 actggccttc caaaaatatg gagaagaaat agcagcagtc atagttgaac cagtcgcggg
    17821 caatatgggt gttgttcctc caattgatgg atttttagaa ggacttcgag agcttactac
    17881 aaaatttggc tccttgctca tttttgatga agttatgacc ggatttagag tagattacta
    17941 ttctgctcaa ggctattatg tggtaacgcc cgatcttact tgtttaggaa aagtgattgg
    18001 tggtggttta ccagttggtg cttatggtgg aaagaaagaa attatggaac agattgctcc
    18061 tgctggttct atttatcaag cgggaacttt atccggaaat ccattagcaa tgaatgctgg
    18121 ctttgaaaca gttcgccaac taacgccgca acactatgat gttttccgca ccctaattaa
    18181 gcgaatggaa gaaggactta cagagatatc tgctagaaga caagtcccgc tctcgattaa
    18241 taaggctggt tcgatgttcg gctttttctt cactgatcaa aaagtgatta attttgatac
    18301 agcaaaaaca agtaatctag aatttttccg aaattattac cgtgaaatgt taggtcaagg
    18361 cattttctta ccaccgtctc agtttgaggg tgtcttcatt tctacgatgc acaccgagaa
    18421 agaaattgat aagaccttgg aagcatttga tacgacatgc aaaatacttc gcggctaatt
    18481 gacgaatctt gaaacttttg ttaaaattat ttctagtata tagaatcaaa tgcaatgaag
    18541 aggaagagta ggacatttat ttttttaaag agagaaagcg gttggtgcaa gctttcaaaa
    18601 atgatgtctg aaggtagcct tggagcagta ttcctgaatt tatagtaagg aataaccggt
    18661 agatttctct atcgttaaca caatgaagtg cctgcaattt ttttctgtgg gtaaaaaggt
    18721 ggtaccgcga ataatactct tttcgtcctt ttatgaggat gagaagagtt ttttattttg
    18781 cctaaaaaag gaggaatcat tatgacaatc gaacacaatg aaataaatat gcctacaaaa
    18841 tatgagccga gtaacgtaga agcaggtaaa tataaatggt ggctagaaaa agaattcttt
    18901 aaagcagaag gaaatacgga taaaaaacct tacagtattg ttattccacc accaaacgta
    18961 acaggtaaac tacatttagg ccatgcgtgg gatacaactt tacaagatat tattactcga
    19021 atgaaaagaa tgcaagggtt tgacacttta tatttaccag gaatggatca tgctggtatt
    19081 gcaacgcaag ctaaagtaga agcgaaatta aaagaatcta atgtttctcg ttatgactta
    19141 ggacgagaaa actttgtgga taagacttgg gaatggaaag aagaatacgc tgagtttatt
    19201 cgtgaacaat gggagaagtt aggccttggt ttagactact caagagaacg atttacacta
    19261 gatgatggtt tatcggatgc cgtaaaaaaa gtattcgtaa cattatataa taaaggtctt
    19321 atttatcgcg gccaatatat aataaactgg gacccagaag cgaaaacggc tttatctgat
    19381 attgaagtaa ttcataaaga tattgaaggc agtttctatc atttgaaata tccattaact
    19441 gatggctctg gttacctaga agtagctaca acacgtcctg aaacaatacc gggtgataca
    19501 gctgttgcgg ttcacccaaa agatgaaaga tatcaacact taattggtaa aaccatcatg
    19561 ctaccgattt tgaatagaga aattcctatt gttgctgatg aatatgtgga aagagagttt
    19621 ggctctggtg cagttaaaat tacgcctgca catgatccga atgattttga agtagggaat
    19681 cgtcatgagt tgccaagaat tattgtcatg catgaagatg ggacaatgaa taaaaatgct
    19741 ggtaaatatg atggtttgga ccgttttgta gctagaaaag aaattattca agatttcaaa
    19801 gacttaggtt tatttatcaa acaagaacct cacttgcatt cagtggggca ttcagagcga
    19861 actggagcgg tagtagaacc ctatctttca ctacaatggt ttgtgaaaat ggaacctctt
    19921 gctgcagaag cactggaact tcaaaaaacg gaaaacaaag tgaattttgt accagctaga
    19981 tttgaaaaaa catatgaaac ttggatggat aacattcacg attggtgtat ttcgcgtcaa
    20041 ttatggtggg gtcacagaat cccggcttgg tatcataaag aaacaggtga aatttatgtt
    20101 ggtgaaagcg aacctgaaaa cctttctgaa tgggaacaag atgaagatgt actagatact
    20161 tggtttagtt cggctttatg gccattttca acaatgggct ggccagatac tgagaatcca
    20221 gatttccaac atttcttccc aactaatact ttagtaactg gatatgatat tattttcttt
    20281 tgggtatcta gaatgatttt ccaatctgtt gaatttactg gtgagagacc ttttaaagat
    20341 acattgattc atggtttagt gcgtgactct gaaggacgta aaatgtctaa gtcgcttggt
    20401 aatggtgtgg acccaattga agttattgac aaatatggag cagattctct tcgttataca
    20461 cttgcaacag gttcatcacc aggtcaagat ttgaaattca gctatgaaaa agtagagtct
    20521 acttggaatt tcattaataa gatttggaat gcatcccgtt ttgtgttaat gaatttagat
    20581 gggatgaaat ataatgaaat tgatttgtct aatgttactg aagttagtga taaatggata
    20641 ttgactagac ttaatgaaac aattcaagcg gttacctcct taggtgaaaa atatgaattt
    20701 ggtgaagtgg gacgaacgtt atataacttt atctgggatg atttctgtga ttggtatata
    20761 gagattgcga aaatacctct ttacggagaa gatgaagtag caaaacaaac aactagatct
    20821 gtacttgcgt atactttgaa tgcgactatg cgattacttc atccattcat gccttttgta
    20881 acagaagaaa tttggcaaaa tttacctcac gaaggggaat ctattacaat tgctgaatgg
    20941 ccaaaagtga atgaacaaca gattgatact aaatcttcta cggccatggc tactttagtt
    21001 gaagtgattc gtgctgtccg gaatattcga tctgaagtga atacgcctct tagtaagcca
    21061 attgttcttg aaattaaacc gaaagatact acgtataaag aaattctaga acaaaatatt
    21121 tcttatattg aacgtttttg taaccctgaa caagtgacaa tttccttcga tgttgaagca
    21181 tctaaaacgg cgatgactgc tgtagtatct ggagcagaga ttttcattcc tttagaggcg
    21241 ttaattgatt taaatgtaga gattgctcga cttgaaaaag aactagaaaa atggaataaa
    21301 gaagtggcaa gagttcaagg gaaactaaac aatgagcgat tcattagcaa agctcctgag
    21361 agtgtagttg cagaagagcg tctaaaagaa aaagattatc tagataaaaa agcctctgtt
    21421 cttgaaagaa ttgaaacgtt aaaagaagta taaaaaacga actgacctta tcatgaaatc
    21481 aactggtagg gtcagtttta aggtggttta aataatgaca ttaaattcgt atgaagaagc
    21541 attagattgg attcacggaa cgcttcgtct aggaataaag cctggactag ctcgtatgga
    21601 gtatatgatg gaaaagctaa atcatccgga aaaagcgaat aagtgggtac atattgctgg
    21661 aacaaatgga aaaggctcaa cacttacttt tgttagaaat gctctagaag aagctggata
    21721 tagaacggga accttcactt caccatacat tgaagttttt aatgaacgaa ttagtattaa
    21781 tggtgaaccg attagcgatg aaatgatcgt ttcattagct aaccgaatta aacctattgc
    21841 ggaagagcta gaaaaaacta tttatggacc accttcagaa tttgaaatta ttacagctat
    21901 gatgttttta tgctttgcgg aatatgtttc cattgatatt ggtattatcg aagtaggact
    21961 aggcggaaga ctggactcta cgaatattct agtgccacta atttctgtaa ttaccacgat
    22021 tgggatggat catatggaat tccttgggga tacaatcgag caaattgcta gtgaaaaagc
    22081 tggcataatt aagccaggaa taccagttgt ttcaggtgct atacaaaaag aagctcaaga
    22141 agttatagct aagatagcaa aaaagaataa atccaatgtt gctcaattaa atgagacttt
    22201 tttcatgcat aatgaaaatg gaaatataac ttataaaact atatatggag aagaaataag
    22261 caatctttcc attgggctgc ttggtcttca tcaattgaat aatgcggcgg tagctattaa
    22321 agtattacag tacttaaata cattttctac ctttgaaatt ggtttggcgg caattaaaaa
    22381 aggcttggaa aaagcatttt ggccaggaag aatggagaaa atcatttcaa atccatttat
    22441 tatgctggat ggagcgcata atccagaagg tattaaaaca ttcgctcatt ccatccaaaa
    22501 gtattctggg cctaagaaaa taatcgtgag tatattagct gataaaaact atcaagaaat
    22561 gttaggaatg ttaaagtcc
//
LOCUS       DASDXX010000027        21285 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.027, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000027 DASDXX010000000
VERSION     DASDXX010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21285
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.027"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..202
                     /locus_tag="U0280_000826"
     CDS             <1..202
                     /locus_tag="U0280_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEM2270781.1"
                     /translation="GKITFNKKNMDKKNNAGKQNVATHELGHGLRLGHNASSDVMYQY
                     STSKTTLSTNDKQSYDAAYKKY"
     gene            218..838
                     /locus_tag="U0280_000827"
     CDS             218..838
                     /locus_tag="U0280_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2270782.1"
                     /translation="MKKTTMGIIASAISILTIGCFLTINTYAEKAEPKKKEVPTYAIF
                     SDYTLDVDNPDEVVEDADYVFVGKVTEETGTIYKNKTPIEQEDGSIEYIGEAYTNYKV
                     EVISNLKNELTLNKEIALEKQGGIREDGSAYDVFEDDQLPEEGEIYIFTAYTQDDGSL
                     LVAGGNSTISFDEKTKNIDTEKEVSKTEEFELYEEAVENQVTSNEN"
     gene            1242..3011
                     /locus_tag="U0280_000828"
     CDS             1242..3011
                     /locus_tag="U0280_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2270783.1"
                     /translation="MKIYKALGWFFKENWKSYAFGVTILFTIALLQLVPPQIIGYTVD
                     AVTNDSLTKDKLIKWMIILVVAAILAYGGRYVWRMLIFGSDNKLQRTLRLRLFEHFTK
                     MSPFFFQRYRTGDLMAHATNDITAIQQVAGIGVLTLSDSVLTGGTVIATMAITIDWRL
                     TLIALLPMPFMVLGSSILGKKLHDRFHGAQAAFSMLNDKTQESISGIKVTRTFGQEKE
                     DIQDFAKQTKEVVQKNISVAKVDAMFDPMISIIVGISFVLSLGFGAKFVVDGELTIGQ
                     VIAFSNYLFLLIWPMLAFGFLYNIIQRGNASYDRVQHLLAEKEDVLDQEGALDTVPVG
                     DLQVAMDKFTYPDESEPVLSDIHFELKAGETLGIVGRTGSGKTSLLKLLMREYDTYEG
                     KIAFANVKIQDYTVRALREAIGYVPQDQFLFSTTVRDNIRFGKPDAPQEEVTKIAKLV
                     AVDEDILGFENGYDTIVGERGVSLSGGQKQRLAIARALIMNPELLILDDALSAVDAKT
                     EEQILANLKENRSDKTTIISAHRLSSVEHANLIIVIDKGQIVERGTHKELMALDGWYA
                     EMFHEQQLEEALEEGGAADGSDE"
     gene            2995..4800
                     /locus_tag="U0280_000829"
     CDS             2995..4800
                     /locus_tag="U0280_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270784.1"
                     /translation="MEAMNEQDEMLVMSGKEHREVLKRMLSYTKYHIPSLIWTGVLVL
                     LVTLADVFAPILIKIFLDDYLTPMNLEMQALLILGAGYLGLTIGKSVVWYFQLLFFQK
                     IALEIVQQMRIDIFTKLHSLGMRYFDKTPAGSIVSRVTNDTEAVKDMFINVLSTAIQS
                     LFMLVGIYAAMFALNVQLALYSLLLFPLIVFIIFVYRKYSSQFYRARREKLSQLNAKI
                     AESISGMSIVQQFNQERRLVKEFEKINKDYYDVGMKNIKFNALLLGPAIDLIYALAVV
                     IILSFFGAESLIGPVAIGTIYAFISYFDRFLEAIYNVMERLAMYQEAITAASRVFRIM
                     DETEEVPAQLNDPEAKITRAKIEFKDVSFAYEGGRDVLKNISFTAEPGQTVALVGHTG
                     SGKSSIINLMMRFYEFERGDILIDGKSIKSHEITELRKKTGLVLQDSFMFYGDINTNI
                     RLYDKSITDEQIVDAAKFVQADGFIQTLSDEYNHKVIERGASFSSGQRQLISFARTVV
                     TNPQILVLDEATANIDTETESLIQTGLKRMREGRTTIAIAHRLSTIKDADLILVLSKG
                     RIIERGTHDTLIAEEGVYHSMYQLQNSGMDLDEAL"
     gene            4881..5369
                     /locus_tag="U0280_000830"
     CDS             4881..5369
                     /locus_tag="U0280_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdC family protein"
                     /protein_id="HEM2270785.1"
                     /translation="MSLIISIIITLVFGAGIIMIRMKASKRPASVKGIIIPPIMMSTG
                     ALMFVIPFFRVSWVDILEAIAMGLVFSVILIWTTKFEIRHKYVFIKRTKAFPVILMGL
                     LLIRIFIKYWISGSLEVGELSGMFWIMAFAMIVPWRIVMYFQYKNTEKELNKVEVSGE
                     YE"
     gene            5543..6058
                     /locus_tag="U0280_000831"
     CDS             5543..6058
                     /locus_tag="U0280_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270786.1"
                     /translation="MKKWLLVVLTLALGLSLAACSGSNSSDKKEDTKKETTSDKDKVL
                     NYYMDLVDVVNENNGDYNAYVGAVGADPKPSEADLAALAKPASESALKVSEALASEKT
                     PDLGKSTDDFKAAVKQLSDAYKLEADALKASGRDTTKADEAMAKADEAIAGVLKDAGL
                     NPSSITTDTAS"
     gene            complement(6100..6708)
                     /locus_tag="U0280_000832"
     CDS             complement(6100..6708)
                     /locus_tag="U0280_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEM2270787.1"
                     /translation="MFYHFAKNLVHFILIIIGGRFQVQNKDKIIEAPYVVVSTHTSWI
                     EILYLGFALSPTPVHYMAKQELFKGKFLNWLMTHLNAFPVNRDNPGPSAIKAPIRMLK
                     SGKVVGIFPSGTRKTTNLHLKRGAVTIAHKAKVPMLPAVYDGPKTFGEILKRKKIIIR
                     FGDPVLFNDTELDQKELLEVKSQELMATFEQLQNEINQTKNK"
     gene            6824..7948
                     /locus_tag="U0280_000833"
     CDS             6824..7948
                     /locus_tag="U0280_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HEM2270788.1"
                     /translation="MKFLHTADLHLGKIVSGVSMLAEQEYILAQITKIAEEEQVDALI
                     LAGDLYDRAVPPADAVKVLNDILVKWNVELGIPIFAISGNHDSAERLAFGSQWYESSK
                     LYMKGKCTSQFEAISFMDAEVWLVPYHEPAIIREAFADNSIRSFEDAMQAVTKQIRSK
                     WDTSKAQILVGHAFVSGGIPSDSERQLAIGNVDRVSTDCFDGFTYTALGHLHHPHAIR
                     HPSIFYSGSPLKYSFSEANDHKSVRIVELEGKELVSVTERFLTPKHDMRIISGTLAEL
                     TENLVENPDDFFQVNLMDEGALIDPMGKLRQFYPNILHLERKKQTLKETQDNFEEIMK
                     KDDLELFGQFFEHVNGTELTETQKQKLADVFEQARKEDAE"
     gene            7945..11016
                     /locus_tag="U0280_000834"
     CDS             7945..11016
                     /locus_tag="U0280_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HEM2270789.1"
                     /translation="MRPIKLTMQAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTI
                     FDAISFAIFGKANTFDRESFSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAK
                     QRGNGTTTSPQKAELYELIGDEMKLLASSVRDVNAKMEELIQLNVDQFRQILMIPQGE
                     FRELLVSDSKEKEVILQRLAHTAYYEKVENLLWEKQKQAEILVVEARKKVAELAELSL
                     PDGEVSGKTTSEISVLQNEAIQKEQAILTELENKLSIIRKQTSEAVEKVTLAKEQLLD
                     WQNLDKYTEEVATLEAEKDFYQTIEVRMEAAKRASNLQSQDALCIRLKEQLETAEQTE
                     KQVALEAEQVKAQFSHAKKQKEALAEKEAELEINKRTLFQLEEMEPKILELETVLIQK
                     RRAELDWKKTTTLLEKIIDKEQKIATELQSVEARLAEINKAELMYLEVINKRTTLEAR
                     IEKEQELVNKRIKMEEWAAAKQTEEQTLAQLLIEKAEMERTIKQEETKLEKEQTATIA
                     AHLHEGDACPVCGSQSHPILAKFGETADLETLEIAKAKLQEKQLVITTTEKAISQLEW
                     QLNEWADMKEQSLAEIQQTLAENIQLATNLREQITQLQSEVAQKETVQATLESLKNRQ
                     NETLTEKNKMALEVEKLHQQVQLTEGKRTYLEQSIPDELRDKAVFDNKMKELSSKIET
                     HIKQAEQIDALFRQAEKETTRLESTLHSAQKTTVDAKEALQVQREIFKEAMKQNDFLS
                     YDAYKQALLSVEELKNLEEKLAEYERKRHLAVSRQADLKEKLQNKQKPNMEQLEFIMK
                     EKQLELSQSEENTMKQREFVAKRKELVENYQNSIQAVEQAEENYADIGLLADAARGKN
                     ARRLTFERYILAMFLDTIIHRANHRLSKMTSGRFELQRKMEKAKGNVQSGLELEVFDE
                     YTGLTRHVKTLSGGESFKTSLALALSLAEVVQEMAGGISLETMFIDEGFGTLDPESLE
                     AAVECLLETQENGRLVGIISHVPELKERISARLEVTATNHGSTTKFITASS"
     gene            11100..14318
                     /locus_tag="U0280_000835"
     CDS             11100..14318
                     /locus_tag="U0280_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2270790.1"
                     /translation="MEHFTAIQNKMIPYSVKQAGKKLMEDGEIIQFREKDASDHFSTY
                     FIDQNVVEDAGNENYACSCADFQLNAICKHIYATHLKMEKEKQKAAKQDFKNRILTQE
                     SNTLLSLFQQNMAQQLEVEEDNTNKTPLQTQYIIRLKPDDSSYIMTIEVKVGTERTYV
                     VKNMNTFLAAIRDRQWLVFTKNFAYDPNEHFFLEEDKQILDKLLQISEIAKMYDTDSF
                     YWSKSYAEEKNLTIPPSMASDLLELLTERDTTCIIMKERVEDIKYRGINVRHDNLDFI
                     FELKKSAEDKYQLEMEDLQQAIFFEAYQLLFFDGTFFIPAKEVWESLKPLMEFHKVTK
                     NEVVQFSESQLSEVISYVLPALQKSGKLKLDDSIEDRITQQPLDCKLFIALEYGEHTL
                     RLEYHYGNQLFDPFATSEEENEKIMIRDVEKEARVMNIIESAPVHFSGTKMVVNKQEK
                     DLYQFYYRTIPKLAEYAEIYMEDGLEEMVEENVRPVTTLDVSGDNDYLSVSFDFKGIP
                     EEEVQNVLESLREKRSYHRLKSGRFLSLESENYKQMEDVLQMLEVRKKDVQANMQVPL
                     YRGMQIYDILGAGTQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKAELRDYQLTGF
                     EWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQS
                     ELEKFAPTIPVTVLHGTKQSRIAEMEEMKHGHVYLISYPSLRQDIVHFADVAFSSVII
                     DESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF
                     KEIPYDNIAKMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIYLAYLEKIQAD
                     LEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQLFDTIQTARENGK
                     RILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLISLK
                     AGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIF
                     DLQKKKQALVDELIQPGEQMLGKLSTEEIKQILQLDNGRDDK"
     gene            14318..14740
                     /locus_tag="U0280_000836"
     CDS             14318..14740
                     /locus_tag="U0280_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HEM2270791.1"
                     /translation="MKKWEVFAVQNVEAAEEIINKLVSEGYEKEDISVLAKSKHNKNL
                     ETLAEKENIEIERPVNEEAFGIISGILQSLSGAIVIPQAYNPKYGALYAAGPFAKWFS
                     KTDDKSVKRLLEDFDLTEKQVDKMIENLHADNILIFAR"
     gene            14764..15567
                     /locus_tag="U0280_000837"
     CDS             14764..15567
                     /locus_tag="U0280_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2270792.1"
                     /translation="MQIKEFLISRRSELVNMFYENYYIETDEFKLRLRGGEEEEAIRS
                     LSTASCGMIIDVITGVKERDFESIGKRRFNDKTDIRKIHQHMSEVEKYIITSLVKWKE
                     AENVFYTDADIIQFMLDIKDTLSSIQQQLLEGFMQENRNQVAAQRKEIIQLSTRIIPI
                     NDSIGVLPIVGSLDDDRGYFMKEKAVESADKLNLDTIVIDFSSAVLKDDFATKHMEDM
                     IQSFKLIGLVPILSGMRPSFAQRTIQVGSNISKLESFGSLEQALTNLGV"
     gene            15722..18424
                     /gene="acnA"
                     /locus_tag="U0280_000838"
     CDS             15722..18424
                     /gene="acnA"
                     /locus_tag="U0280_000838"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEM2270793.1"
                     /translation="MTNWKEKAKASFQLNDKTYHYYKLKTLEEDKLTNIEKLPYSVRV
                     LLESVLRQADGRVIKDSHVEDLAHWSKDGNEGEVPFKPARVILQDFTGVPAVVDLASL
                     RKAMADLGGDPEKINPEIPVDLVVDHSVQVDSYANPEALKINMELEFKRNMERYQFLN
                     WAQKAFDNYRAVPPATGIVHQVNLEYLANVVIANEVADGEFVAFPDSLVGTDSHTTMI
                     NGIGVLGWGVGGIEAEAGMLGQPSYFPIPEVIGVKLLGALPNGATATDFALKVTQVLR
                     EQKVVGKFVEFYGPGVATLPLADRATVANMAPEYGATCGFFPVDKEALNYLKLTGRDK
                     EQIELVEAYLEANDLFFTPEKVEPNYTQIVEIDLSAIEPNLAGPKRPQDLIPLSKMKE
                     TFRESITAKAGNQGFGLDKSALDKEVTVTFGNGDQSTMKTGSVAIAAITSCTNTSNPY
                     VMLSAGLVAKKAVEKGLEVPKFVKTSLAPGSKVVTGYLEKAGLLPYLEKLGFDLVGYG
                     CTTCIGNSGPLKEEIEEAIQDSDLLVSAVLSGNRNFEGRIHALVKANFLASPPLVVAY
                     ALAGTTNVDMLTEPIGRGNNGEEVFLDDIWPSSEEVKALVEETVTPELFREQYAHVFD
                     ENEAWNAIETTEDALYKWDENSTYIANPPFFDNLAKEAGKVESLSGLRVIGKFGDSVT
                     TDHISPAGAIGKDTPAGKFLQEEGVAIRDFNSYGSRRGHHDVMMRGTFANIRIKNQIA
                     PGTEGGYTTYWPTGEVMSIYDASRKYIENNTGLVILAGDDYGMGSSRDWAAKGTNLLG
                     IKTVIAKSYERIHRSNLVMMGVLPLQFQPGEDAETLGLTGSESLQVEIGEEVAPRDLV
                     KVTAVREDGSSFTFEALARFDSEVEIDYYRHGGILPMVLRGKLK"
     gene            18524..18757
                     /locus_tag="U0280_000839"
     CDS             18524..18757
                     /locus_tag="U0280_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270794.1"
                     /translation="MRYQKISFIVTGIIAAVIGYLIFTSNYHPDVPNWLLFLFLALSI
                     AVAVSQWKEKRLIWSCVGLFVAVLISVYYILTI"
     gene            18770..19351
                     /locus_tag="U0280_000840"
     CDS             18770..19351
                     /locus_tag="U0280_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEM2270795.1"
                     /translation="MSEELRCPWSINDPFELEYHDTEWCVPSKDDTYLFEMLNLEGAQ
                     AGLSWRLILHKRKAYQEAFFHFDIDKCARLTDDELATIVEEAAIVKNRLKVKAVRTNA
                     LATQKVQAEFGSFANYIWGFTNNDRIINEWQGMGEVPASTELSEKISKDLKKRGFKFV
                     GPVIVYSYLQAIGILDDHLRSCPFHTFNREATK"
     gene            19348..20322
                     /locus_tag="U0280_000841"
     CDS             19348..20322
                     /locus_tag="U0280_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM2270796.1"
                     /translation="MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVT
                     FGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSNQLLPYLDYELISE
                     NPKILCGFSDITALATAIYTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPF
                     ALKESAAWSDDEWYLDQENRNFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMP
                     NLAGTILFIEDDFMTVPETFDRDLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYI
                     IETKTALQKIPVISGADFGHTQPIATFPIGGTARIDTNQTDKIQIIRH"
     gene            complement(20359..>21285)
                     /locus_tag="U0280_000842"
     CDS             complement(20359..>21285)
                     /locus_tag="U0280_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270797.1"
                     /translation="EGGDASNAGITAYYDDKGAPVSEEEYWNSADKDGNPTYKSETLS
                     LTDSVAYLKTQEQAAPTKEAKETIQKQIDFYQAYVDADEKPASNSAGISSADFFASLG
                     SSGAVATMLVVVVASIIVATEFSGGTIKLLLTRPYSRSQILFSKYVMCIVYSIISSIT
                     LLVASFIFSFILPKQSIFMPLSPSTGAMTAFEHAWMLLGTNFLLMIVYATIAFFFSSV
                     VRSQALAVGVGVGVLFSGGIIRQLLPLAIEKYDWMKWIIFNLLSLNDTVGGSKIAGGL
                     ADWQIIAGLGVYTAIILFFTFFLFKKRDVALS"
BASE COUNT         7201 a         3593 c         4559 g         5932 t
ORIGIN      
        1 cgggaaaatt acttttaaca agaaaaatat ggataaaaaa aataatgctg ggaaacaaaa
       61 tgttgctaca catgagttgg gacacggctt gcgactcggg cataatgctt ctagtgacgt
      121 aatgtatcag tatagcacgt ccaaaactac tttatctaca aatgataaac aatcctatga
      181 tgcagcatat aaaaaatatt aaaaaggggt actaacattg aaaaaaacaa ctatgggaat
      241 aatcgcttca gcaattagta ttttaactat cgggtgtttt ttaacaataa acacatatgc
      301 cgaaaaagct gaaccaaaga agaaagaagt accaacatat gccatttttt ctgattatac
      361 actggatgta gataatccag atgaagtggt cgaggatgca gattatgtgt ttgtagggaa
      421 agtaacagaa gaaactggaa caatctataa aaataaaacg ccaatcgaac aagaagatgg
      481 ttcaatcgag tatattggtg aagcttatac aaattacaaa gtagaagtca tttcgaattt
      541 gaagaatgaa ctaacgctga ataaggaaat tgcacttgaa aaacagggtg gtattcgtga
      601 agatggttct gcttatgatg tttttgaaga tgaccagtta ccagaagaag gcgaaatcta
      661 tattttcact gcttatacgc aagacgatgg atcactcctt gtagcaggtg ggaattctac
      721 catttctttc gatgaaaaaa cgaaaaacat tgatacagaa aaagaagtga gcaaaacgga
      781 agagtttgaa ttatatgaag aggccgttga aaatcaagtt acttccaacg aaaattaaat
      841 aagccattat aaagcatagc gattctggca tgaatcgtta tgctttttta tatagtcgaa
      901 ggatttcgag aaaaagccta ataaaaataa tttttaaaca atttgcaatt atttgttgcg
      961 ctttcaaaaa aaatcggtta aactaataac gttgcataat aaaacaaagg aggaatggac
     1021 gatgaataat tatatgaaga cttcaaacaa ggcattattg cgcttaaaaa tagaatttat
     1081 ttcaccggat catttcacga acaagggaac tctcctttaa tttggtttta ttttatacaa
     1141 agtggtgaca aataaatata ttttttcggg taataatggg cagaaatagg tccattattt
     1201 ttatttgtcc aattttaagg agaaaaggga gggattgttg tttgaaaatt tataaagcat
     1261 tgggttggtt ttttaaagaa aattggaaat cttatgcatt tggagtaacc attttgttta
     1321 cgattgcgct tttacagtta gttccgccgc aaattattgg ctatacggtt gatgccgtaa
     1381 cgaacgactc actgacaaaa gacaaattga ttaaatggat gattattcta gttgtagcag
     1441 cgattcttgc atacggtggt cgctatgttt ggcggatgtt aatttttggt tctgataata
     1501 aattacaacg cactttacgt ttacgattat ttgaacattt taccaagatg tcgccatttt
     1561 tctttcaacg ttatcgtact ggggatttaa tggcccatgc gacgaatgat attacagcta
     1621 ttcaacaagt tgcggggatt ggcgttttga ccctatcaga ttctgttcta acagggggaa
     1681 cggttattgc gacaatggca ataacgattg attggcgcct aaccttgatt gcattacttc
     1741 caatgccgtt tatggtactc ggaagttcga ttttaggtaa aaagttacac gaccgtttcc
     1801 acggggcaca agctgctttt tcaatgttga atgataaaac gcaagagagt atttctggca
     1861 ttaaagtaac acggacattt ggacaagaga aagaagatat tcaagatttt gcaaaacaaa
     1921 ccaaagaagt cgttcaaaaa aatatttctg tcgctaaagt ggatgcgatg tttgatccga
     1981 tgatttccat tattgtgggg atttcatttg ttctttcact aggatttggc gcgaaattcg
     2041 ttgtggatgg agagttgact attggacaag tgattgcttt ttcgaactac ttattcttat
     2101 taatttggcc gatgttagca tttggatttt tgtacaatat tattcaacgc gggaatgctt
     2161 cttatgatcg tgtgcaacat ttactcgccg aaaaagaaga tgtacttgac caggagggcg
     2221 cactagatac ggttccagtt ggggacttac aagttgcaat ggacaaattt acctatcctg
     2281 atgagagtga accagtcttg tcagatattc attttgaatt aaaagctggg gaaacactgg
     2341 gtattgttgg tcgaactggt tctgggaaaa catccttatt aaagctttta atgcgagaat
     2401 atgatacgta tgaaggtaag attgcttttg ctaacgtgaa aattcaagac tatacggttc
     2461 gagctttacg agaagcaatt ggctatgtgc cgcaagatca gtttttattc tccacaacgg
     2521 tacgagataa tattcgtttt ggaaaaccag atgcaccgca agaagaagtg acgaagattg
     2581 caaagcttgt ggctgtagat gaagatattc ttggttttga aaatggctat gatacgattg
     2641 tcggcgagcg cggggtttca ctctctggtg gtcagaagca gcgtcttgct atcgcacgag
     2701 cgctaattat gaatcctgaa ttgcttattt tagatgatgc actttcggca gtagatgcga
     2761 aaacagaaga acaaatttta gctaatttaa aagagaatcg ttcggataaa acgacaatca
     2821 ttagcgcaca cagacttagc tctgtcgaac atgcgaatct aattatcgtg attgataaag
     2881 ggcagatcgt ggaacgtgga acgcataagg aactaatggc tttagatggc tggtatgcag
     2941 aaatgttcca cgagcaacaa ctggaagaag cactagaaga agggggtgca gcagatggaa
     3001 gcgatgaatg aacaagatga aatgttagtg atgtccggta aagaacatcg cgaggtttta
     3061 aaaagaatgc ttagttatac caaatatcat attccgagtt tgatttggac aggtgtgctt
     3121 gttcttctcg taacgcttgc ggatgtcttt gcaccaatct tgattaagat atttttggat
     3181 gattatttaa caccgatgaa tttggaaatg caggctttgc taattcttgg tgcgggatat
     3241 ttgggactta cgattgggaa atcagttgtt tggtatttcc aactgctgtt cttccaaaaa
     3301 atcgcgcttg aaattgtgca acaaatgcgg attgatattt ttacaaaact tcattcgcta
     3361 ggtatgcgtt attttgacaa aacgcctgca ggaagcattg tgtcgcgcgt gacaaatgat
     3421 accgaagcgg tgaaagatat gtttattaat gtgctttcaa cagcgatcca aagtttgttt
     3481 atgcttgtag ggatttatgc ggcgatgttt gcgctcaatg ttcaattagc gttatatagt
     3541 ttgctgttat tcccacttat tgtctttatt atttttgttt accggaaata cagttcgcag
     3601 ttttaccggg cgagacgaga aaaattaagt caattaaatg caaaaattgc tgagtcgatt
     3661 tcaggaatgt cgatagttca acaatttaat caagagcgtc gtttagtaaa agaatttgag
     3721 aaaatcaata aagattacta tgacgtcgga atgaaaaata tcaaatttaa tgcgctatta
     3781 cttggaccgg cgattgattt gatttacgcg ttggctgtag tgattattct tagtttcttt
     3841 ggtgcagagt cattaatagg accggtagcg attggtacaa tttatgcctt tattagttac
     3901 tttgatcgtt ttttagaagc tatttataat gtaatggaac ggctagcaat gtatcaagag
     3961 gcgattacgg cggcttcccg agtatttcgt attatggatg aaacagaaga agtgccagcc
     4021 caattgaacg atccagaggc aaaaatcaca cgcgctaaaa ttgagtttaa agatgtttcg
     4081 tttgcttatg aaggtgggcg tgacgttctt aaaaatatta gctttacggc tgaaccagga
     4141 caaacggtgg cgcttgttgg ccatactggg agcgggaaaa gttccattat caatttaatg
     4201 atgcgttttt atgaatttga acgtggcgat attttaattg atggtaagtc gattaagtct
     4261 cacgaaatta cagaactgcg taagaaaact ggactagttt tgcaagatag ttttatgttt
     4321 tatggggata ttaatacaaa tattcgcctc tacgataaaa gcattacaga tgaacaaatt
     4381 gtggatgctg cgaaatttgt tcaagcggat ggctttattc aaacattatc cgatgagtac
     4441 aaccataaag tgattgagcg aggggcttcg ttttcaagtg ggcaaagaca gctgatttca
     4501 tttgccagaa cggttgtgac gaatccgcaa attctcgttt tagacgaagc gacagcgaat
     4561 attgatactg aaacagaaag cttaattcaa actgggttaa aacgaatgag agaaggacgt
     4621 acgacgattg cgattgcgca tcgactttcg acaattaagg atgccgattt aattttagtt
     4681 ttatctaaag gacgaattat tgaacgtggt acacatgata cattaattgc agaagaagga
     4741 gtgtaccatt ccatgtatca attacaaaat agcggaatgg atttagacga agcactttaa
     4801 gcagagaagt ttatttcaaa cggtaaaagg aatataatga ggagcgaagt gttacagcag
     4861 attagtaggg ggaattaaaa gtgtcattaa tcatttcaat tatcattaca cttgtttttg
     4921 gagctggaat tatcatgata agaatgaaag catcgaagcg tccagcaagt gtgaaaggga
     4981 ttatcatacc accaattatg atgtcaacag gcgctctcat gtttgttatt ccttttttcc
     5041 gtgtttcgtg ggtagatatt ttagaagcta tagcaatggg gcttgtgttt tctgttattt
     5101 taatttggac aacaaaattc gaaattcgtc ataagtacgt atttattaaa cgtacaaaag
     5161 cttttccagt tattttgatg ggactgttac tcattcgaat cttcatcaag tactggatta
     5221 gtggtagtct ggaagtggga gagttgtctg gaatgttctg gataatggcg tttgcgatga
     5281 ttgtaccttg gcgaattgtg atgtatttcc aatataaaaa taccgaaaaa gagcttaata
     5341 aagtagaagt tagtggagag tacgaataat agtgaaagca ttttctaaaa cagcttgaat
     5401 tattccgtat gaatagctta taatgaataa tgttacatcg tgagtaatgt tacttgccgg
     5461 atgggtgaag catatccgag actgacgcgg ccagttacaa aagggcttcc gagtttggct
     5521 tgaaaaaaag gaggacatca tcttgaaaaa atggttatta gtagttttaa ctttagcact
     5581 aggattgtcg cttgcggctt gttccggttc taacagttct gacaaaaaag aagacacaaa
     5641 aaaagaaaca acaagtgata aagacaaagt actaaattat tacatggact tagtagacgt
     5701 tgttaatgaa aacaatggcg attacaacgc ttatgtagga gcagttggcg cagatcctaa
     5761 accatctgaa gcagaccttg cagctcttgc gaaaccagct agtgaatcag cacttaaagt
     5821 atctgaagca cttgctagtg aaaaaacacc agaccttggt aaatccacag atgatttcaa
     5881 agcagctgtg aaacaattaa gtgatgctta caaattagaa gcagacgcac ttaaagctag
     5941 tggtcgtgat acaacaaaag cagacgaagc gatggcaaaa gcggacgaag caattgctgg
     6001 cgtattaaaa gatgctggac ttaatccttc aagcattaca actgatacag cttcctgata
     6061 ataaaaaaga cagtttccta atggaagctg tcttttttat tatttatttt ttgtttgatt
     6121 aatttcattt tgaagttgtt caaaagtcgc cattaattct tgagatttaa cttctagtag
     6181 ctctttttgg tcaagttcgg tatcattgaa taataccgga tcgccaaaac gaataatgat
     6241 ttttttgcgt tttaaaattt ctccaaatgt ttttggccca tcataaacgg caggtagcat
     6301 tggaactttt gctttatgag cgatagttac tgcaccgcgt tttaaatgaa ggttggtcgt
     6361 ttttctagtt ccactcggga aaatcccaac tactttaccg gattttaaca tccggattgg
     6421 ggctttaatg gcgcttggtc cggggttatc gcgattgact ggaaaggcgt taaggtgcgt
     6481 catgagccag ttaaggaatt tacctttgaa aagctcttgt ttcgccatat aatgtaccgg
     6541 tgttggcgat agggcgaaac caaggtataa gatttcaatc catgacgtat gcgtggacac
     6601 aacaacgtat ggtgcttcaa tgattttgtc tttgttttgt acttgaaatc gtccaccaat
     6661 aataattaaa ataaaatgaa cgaggttttt tgcgaaatga taaaacaact tcttcactcc
     6721 cagtattgct agttattttt ttaaactata tctagtatac ttaaaattga cgagttttgc
     6781 attaaaaata aataatctct gagaaaaaga aatgaggtaa ccgatgaaat ttttacatac
     6841 agctgatttg catttaggaa aaattgtatc tggcgtatcg atgctagcag agcaagaata
     6901 tattttggca caaataacga agattgccga ggaagaacaa gtcgacgcac ttattttagc
     6961 aggagattta tatgaccgcg ccgtgccgcc tgcggatgcg gtgaaagtgc taaatgatat
     7021 tttagtgaaa tggaatgtag aactaggtat tccgatattt gccattagcg ggaatcatga
     7081 cagtgcggag cggcttgctt ttggaagtca gtggtatgaa agtagcaagt tgtatatgaa
     7141 aggaaaatgt acctcgcagt ttgaagcgat ttcttttatg gatgccgaag tgtggcttgt
     7201 accatatcac gaaccagcaa ttattcggga agcttttgca gataattcga ttcgcagttt
     7261 tgaggacgct atgcaagccg tgacgaaaca aattcggtcc aaatgggata caagcaaggc
     7321 gcagattttg gttggacatg cgttcgtttc tggcggtatt ccgagtgatt ccgaacgaca
     7381 actagcaatt ggaaatgtgg accgtgtttc tacggattgt tttgatggtt ttacatatac
     7441 tgcactcggg cacttgcacc atccgcatgc gattcggcac ccgtctatct tttatagtgg
     7501 atctccttta aagtattcat tttcagaagc aaatgatcac aaaagcgtgc ggattgtgga
     7561 actggaagga aaagaactgg ttagcgtgac ggagcgcttt ctaacaccaa aacatgatat
     7621 gcgcattatt tctggaacac tagcggaact gacagaaaac ttagtagaaa atcctgatga
     7681 cttttttcaa gtgaatttaa tggatgaagg tgctttaatt gatccgatgg ggaaattacg
     7741 ccaattttat ccgaatattt tacatttaga acgtaaaaaa caaacattaa aagaaacgca
     7801 agataacttt gaagaaatca tgaaaaaaga tgatttagag ctatttggtc aattttttga
     7861 acatgttaat gggacagaat taacggaaac acaaaaacaa aagttagcgg atgtttttga
     7921 acaagcgagg aaggaggatg cggaatgaga ccgattaaat taacgatgca agcttttgga
     7981 gcctatgcca aaaaagaagt cattgatttt gaaaagcttg gaacggagca aatttttgtg
     8041 atttctggta aaacaggagc tgggaaatcg acaatttttg atgcgattag ttttgcaatt
     8101 tttgggaaag cgaacacatt tgatagggaa agtttttcga tgcgaagtca ttttgcgacg
     8161 gataaagaaa taacggaagt aacgctagct tttagattga aggacaagat ttaccaaatt
     8221 agccgcattc ctcagcagga aattgccaaa caacgcggaa acggaacaac cacttcgccg
     8281 caaaaagcag aattatatga gttgattggt gacgaaatga agttgcttgc aagttccgtg
     8341 cgcgatgtta atgcaaaaat ggaagaatta attcaactta atgtggatca gtttagacaa
     8401 attttgatga ttcctcaagg cgaatttaga gaactgctcg tatcggatag taaagaaaaa
     8461 gaagtcatat tgcaacggtt agcgcatact gcttactatg aaaaagtgga aaatttgtta
     8521 tgggaaaagc agaagcaagc cgaaatcttg gttgtagaag cgcgtaaaaa agtagcggaa
     8581 cttgctgaac ttagtttacc ggatggggaa gtttctggaa agacaacgag tgaaatcagc
     8641 gtgttgcaaa acgaggccat tcaaaaagaa caagcaattt taacggaatt agaaaataaa
     8701 ttaagtatta ttcggaaaca aacaagtgaa gctgttgaaa aagtgacgct tgcgaaagaa
     8761 caactgcttg attggcaaaa tttggataag tatacagaag aagttgcgac actagaagcg
     8821 gagaaagatt tttatcaaac aatagaagtt cgcatggagg ctgcgaaaag agcaagcaac
     8881 cttcaatccc aagatgcact ttgtattcgt ttaaaagaac aattagaaac agccgaacaa
     8941 acagaaaaac aagtagcact tgaggcagaa caggtaaaag cccaattttc acatgcgaaa
     9001 aaacaaaaag aagctcttgc tgaaaaagaa gcagaattag aaataaacaa acgaacactt
     9061 ttccaattag aagaaatgga accgaaaata ttggaattag aaacagtctt gatccaaaaa
     9121 agacgcgccg aattagactg gaaaaaaaca acgacccttt tagaaaaaat aatcgacaag
     9181 gaacaaaaaa tagccacaga actgcaatca gttgaggcgc gattagcgga aataaacaaa
     9241 gccgagctca tgtatttaga agttattaac aaacggacaa cattagaagc caggatagag
     9301 aaagaacaag aattggttaa taaacggata aaaatggagg agtgggccgc agccaaacaa
     9361 actgaagaac aaacattagc acaactttta atagaaaaag cggaaatgga aagaacgatt
     9421 aaacaagaag aaacaaaact agaaaaagaa caaacggcaa caatcgcagc gcatttgcat
     9481 gaaggagatg cttgtcctgt ctgtggttca cagtcacacc caatactcgc gaaatttgga
     9541 gaaacagctg accttgaaac actcgaaata gcaaaagcaa agctacaaga aaaacaatta
     9601 gtgattacta cgacggaaaa agctatcagt caactcgaat ggcaacttaa tgaatgggca
     9661 gatatgaaag agcaaagttt agccgaaata caacaaacat tagctgaaaa tatccaacta
     9721 gctactaatc tgagagagca aataacccag ttgcaatccg aagtagctca aaaagaaact
     9781 gtccaagcga cattagaatc attgaaaaac agacaaaatg aaacgctaac cgaaaaaaat
     9841 aagatggctc tcgaagtaga aaagttgcat caacaagtgc aactaacgga agggaaacga
     9901 acttatttgg aacaatccat tcccgacgag ttgcgagata aggctgtttt cgataacaaa
     9961 atgaaagaac taagctcaaa aatcgaaaca catatcaaac aagccgaaca gattgatgcg
    10021 ttgtttagac aggcagaaaa agaaacaacc agactagaat ccacgttaca ttcagcgcaa
    10081 aaaacaacgg tggatgcgaa agaagcctta caagtacagc gcgaaatttt caaagaagcc
    10141 atgaaacaaa atgatttttt atcctatgat gcgtataaac aagctttgtt atcagtagaa
    10201 gaactaaaaa acttagaaga aaaattggcc gaatacgagc gaaaacgcca tttagctgta
    10261 tcacgccaag ctgatttaaa agaaaaactc caaaacaaac aaaaaccaaa tatggaacaa
    10321 ctagaattca ttatgaaaga gaaacaactc gaacttagcc aatcagaaga aaatacaatg
    10381 aaacaacgcg aattcgttgc aaaaagaaaa gaacttgtcg aaaactacca aaacagtatt
    10441 caggcagtgg aacaagccga agaaaattat gcggatattg gcttactagc tgatgcagcg
    10501 cgtggtaaaa atgcccggag attaacgttt gaacgatata ttttagcgat gtttttagac
    10561 acgattattc accgcgccaa ccaccgttta tccaaaatga caagcggtcg ttttgaacta
    10621 cagcggaaaa tggaaaaagc aaaaggaaat gtccaaagtg gcttagaact tgaagttttt
    10681 gatgagtata caggattaac tcgacatgta aaaacacttt cgggaggaga aagcttcaaa
    10741 acttctttag cgcttgcatt atcactcgca gaagtcgttc aagaaatggc aggtgggatt
    10801 tcacttgaaa cgatgtttat tgatgaagga ttcggtacgc ttgatcctga atcacttgaa
    10861 gccgctgtag aatgcttact ggaaacacaa gaaaatggcc gcttagttgg gattatttcc
    10921 catgtaccag aactaaaaga acgaatttcc gcaaggctag aagtaaccgc aacaaatcac
    10981 ggaagtacca ctaaatttat tactgcaagt agctaaaaga ccgcatgcgt tgccgtccct
    11041 cgtcttttcc tatataatag tagtttagag taatggacgg ttttgggagg aagaaagtaa
    11101 tggagcactt tacagcaatt caaaataaaa tgatcccata tagtgtgaag caggctggaa
    11161 agaaactgat ggaagacgga gaaatcattc agtttcgtga aaaagatgca tcagaccatt
    11221 tttcaacgta ttttattgat caaaatgtcg tagaagatgc aggtaatgaa aattatgcgt
    11281 gtagttgtgc cgattttcaa ttgaacgcga tttgcaaaca catctacgca acccatctga
    11341 aaatggaaaa agaaaagcaa aaagcagcca aacaagattt taaaaatcga attctcacgc
    11401 aagaatcaaa tacacttctt tccctttttc aacaaaatat ggcgcaacag ctcgaagtag
    11461 aagaggacaa tacgaataaa acgccactcc aaacgcagta tatcattcgt ttaaaacccg
    11521 atgattctag ttatatcatg actattgaag tcaaagttgg cacagaacgg acctatgttg
    11581 taaaaaatat gaatacattt ttagccgcaa ttcgcgacag gcagtggctt gttttcacta
    11641 agaattttgc ttacgatcca aacgagcatt tctttcttga ggaagacaaa caaattttgg
    11701 ataaactact gcaaatcagt gaaattgcca aaatgtatga tacagattct ttttattggt
    11761 ccaaatctta cgcagaagag aaaaacctaa cgattccacc gagtatggcg agcgacttgt
    11821 tagaactact cacagaacgc gatacgacgt gcattattat gaaagaacgc gtagaagata
    11881 ttaaatatcg cggtatcaat gtgcgccacg acaaccttga tttcattttt gaactcaaaa
    11941 aaagtgcaga agataaatac caactagaaa tggaagactt acaacaagca atcttttttg
    12001 aagcctacca acttcttttc tttgacggta cctttttcat accggcaaaa gaagtatggg
    12061 aatcgttgaa accattgatg gaatttcata aagtaacgaa aaatgaagtg gtgcaatttt
    12121 cagagtcgca attaagtgaa gtcatttcct acgtattacc agccttacag aaaagcggga
    12181 agttaaagct ggatgactcg attgaagacc ggattacgca acagccactt gattgtaaat
    12241 tattcattgc actcgaatac ggggagcata cgttgcgact tgaatatcat tatggcaatc
    12301 agcttttcga tccatttgca acatcagaag aagaaaacga aaaaatcatg atacgtgatg
    12361 tcgaaaaaga agcccgtgta atgaatatta tcgaaagcgc ccctgttcat ttttctggaa
    12421 caaaaatggt cgtcaataaa caagaaaagg atttgtatca attttattat cgcaccattc
    12481 caaaactagc agagtacgca gagatttata tggaagacgg tctcgaagaa atggtagaag
    12541 agaatgtgcg cccagttacg acactggatg tttctggtga taacgattat ctttctgttt
    12601 cgtttgattt caaaggtatt ccggaagaag aagtgcaaaa tgtcctagaa tctttgcgtg
    12661 aaaaacgtag ctatcaccgt ctgaaaagtg gccgtttctt atcgcttgaa tcagaaaact
    12721 acaaacaaat ggaagatgta ctccaaatgt tagaagtgcg taagaaagat gtccaagcaa
    12781 acatgcaagt accgctttat cgtgggatgc aaatttatga tattttagga gcaggaacac
    12841 aagatgaaca tcataaattc agtcgttctt tccgcgaatt gcttacagat attacgacgc
    12901 aatccgaaga cagttttgcg ttaccaaaag gattaaaagc agagttgcgc gattatcaac
    12961 taactggttt cgaatggatg aaatcacttg cgaagtataa tcttggtggt attttagcag
    13021 atgatatggg gcttggtaaa acggtgcaaa cgattagttt tctagcatct gagttagaag
    13081 ataaccctaa cttaaaacca gtcttaatta ttacgccagc atcactactt tataactggc
    13141 aaagcgaatt agaaaaattt gcgccaacta ttccagtgac cgttttacat ggaacgaaac
    13201 aatcccggat agccgaaatg gaagaaatga agcatggcca tgtctacttg atttcgtatc
    13261 catcgttacg ccaagatatt gtccattttg cagatgtcgc tttttcaagt gttattattg
    13321 acgaatcaca agctatcaag aattatcata cgaaggcctc tcaagctgtg cgcgctttga
    13381 aacgcaatca tgtattcgcg ctcagtggaa cgccgcttga aaacagcatc gatgaactat
    13441 gggctatttt ccaaacatta atgccaggat ttttcccttc attgcgcaaa tttaaagaaa
    13501 taccttacga caacattgct aaaatgattc gtccattctt actacgtcga ctaaaacaag
    13561 atgtcgtcaa agaactacca gataaaattg aaaccaacct ttattctgaa ttaaccgatg
    13621 agcaaaaaac aatatactta gcttatttag aaaaaattca agctgattta gaagcaagca
    13681 atggtaatgc ttccgaagaa cgaatcaaat tactcgcagg attaacccgt ttacgccaaa
    13741 tttgctgtga tccgagcctt tttgtggaaa attatcaagg tgaatctggt aaattactac
    13801 agttatttga tacaatacaa acagcaagag aaaacggtaa acgcattctc ctattttccc
    13861 aattcacggg tatgcttgga attattcgcc aaaaactaga agaagatgga caaacacttt
    13921 tctacatgga tggtaaaact ccatcgaaaa caagactaga tatggttaat gcttttaacg
    13981 aaggggagaa tgatattttc ttgatttcct taaaagctgg tggaaccggg ctcaatcttg
    14041 ttggcgcgga taccgtgatt ttatacgatt tatggtggaa tccggctgta gaagaacaag
    14101 ctaccggacg tgcacatcga atcgggcaaa aacgcgttgt ccaagtgttc cggatgatca
    14161 ctaaaggaac gatagaagaa cgaatttttg atttgcaaaa gaaaaaacaa gcgctagtgg
    14221 acgaactaat ccaaccaggc gaacaaatgc taggaaaatt aagcacagaa gaaataaaac
    14281 aaatcttaca attggataat ggaagggatg acaaataatg aaaaagtggg aagtattcgc
    14341 agttcaaaat gtcgaggcag cagaggaaat tatcaacaaa ctagtaagcg agggatatga
    14401 aaaagaagat atttctgttc tagctaaatc aaaacataac aaaaacttag aaactttagc
    14461 agaaaaagaa aatatcgaaa tcgaacgtcc tgtaaatgaa gaggctttcg gtattatttc
    14521 tggaatcctc caatctctaa gtggagccat tgttattcca caagcttaca atcccaaata
    14581 tggtgctttg tatgctgccg gtccctttgc caaatggttc tcgaaaacag acgataaatc
    14641 ggtaaaaaga ttattagaag actttgattt aacagaaaaa caagtagata aaatgattga
    14701 aaatttacat gcagataaca tcttaatttt tgcgagataa tatcggtgaa aaaggagaag
    14761 tttatgcaaa ttaaggaatt tttgattagt cgtcgttcag aattagtgaa tatgttttat
    14821 gaaaattatt atattgaaac ggatgaattt aaattaagac ttcgtggcgg ggaagaggaa
    14881 gaagctattc gctcgctaag cactgcatca tgtggcatga ttattgatgt cattaccggc
    14941 gtgaaagaac gagattttga aagtatcggt aaaagacgct tcaatgataa gacggatatt
    15001 agaaaaattc atcaacatat gagtgaagtt gaaaaatata tcattactag cttagtgaag
    15061 tggaaggaag cagaaaatgt tttctatacg gatgctgaca ttatccaatt tatgcttgat
    15121 ataaaagata cgctttcatc cattcaacaa caattgttag aaggatttat gcaagaaaat
    15181 agaaatcaag tagcagctca gcgaaaagaa atcattcaat tatccacgcg aattattcca
    15241 ataaatgatt ctattggcgt tttaccaatt gttggtagtt tagatgacga tagaggttat
    15301 tttatgaaag agaaagcagt agaatctgcg gataagctga atttagatac gattgtcatt
    15361 gatttttcca gtgctgtatt aaaagatgat ttcgcaacca aacatatgga ggatatgatt
    15421 caatctttta aattaattgg cttagtacca atactttctg gtatgcgccc aagtttcgct
    15481 caacgcacaa tccaagttgg ttcaaatatt tccaaactcg aatcatttgg ctctttagaa
    15541 caagcattaa ccaatttagg tgtttaaagt acagatgaat ggcactcgtt gtcattcatt
    15601 tttttgctat aagaaaaagt tatcgaatta tagcggattc tctttgttta cttatcgccc
    15661 gtttttaagt acaatagatg agagagacca atcgtttcaa gaattgaagg aggaaacgtg
    15721 gatgactaat tggaaagaaa aagcaaaagc atcatttcaa ctaaacgaca aaacgtatca
    15781 ttattacaaa cttaaaacct tagaagagga caagcttaca aacatcgaga aattacctta
    15841 ttctgtacgt gttttacttg aatccgtttt aagacaagca gatggcagag taattaagga
    15901 ctcacatgta gaagatttag cccattggtc taaagatgga aacgaaggcg aagtaccatt
    15961 caaaccagcc cgtgttattt tacaagattt cacaggtgtt cctgcagtgg ttgatttagc
    16021 ttctttacgt aaagccatgg cagatcttgg cggcgaccct gaaaaaatca atccggaaat
    16081 cccggtcgat ttagtcgtcg atcactcggt gcaagtagac agctatgcga atccagaagc
    16141 actgaaaatc aatatggaac tcgaattcaa gcgcaacatg gaacgttacc agtttttaaa
    16201 ttgggcgcaa aaagcatttg ataactatcg cgcagtacca cctgcaacag gtatcgttca
    16261 ccaagttaac ttagagtatt tagcaaacgt cgttattgcg aatgaagtag cagacggcga
    16321 atttgtagcg tttccagatt cccttgtcgg aacagatagc catacgacga tgattaacgg
    16381 tattggtgta ttaggttggg gcgtgggcgg tattgaagca gaagccggca tgctcggtca
    16441 accatcttac ttcccaattc cagaagttat cggtgtgaaa ttgctaggtg ctttaccaaa
    16501 cggcgcaaca gcaactgatt tcgctctaaa agttacccaa gtcttacggg aacaaaaagt
    16561 agtaggtaaa tttgttgaat tttatggtcc gggtgttgcg acacttccgc ttgctgaccg
    16621 tgcaaccgtt gcgaatatgg ctccagaata cggcgcaact tgtgggttct tcccagtaga
    16681 taaagaagcc cttaattatt taaaactaac tggccgtgac aaagaacaaa tcgaattagt
    16741 agaagcttat ttagaagcaa acgatttatt cttcacacct gaaaaagtag aaccaaacta
    16801 cacgcaaatc gtggaaatcg atctttccgc gattgaacca aacttggcgg ggccaaaacg
    16861 tccccaagat ttgatccctc tttcgaaaat gaaagaaaca ttccgggaat cgattactgc
    16921 caaagcaggc aaccaaggtt tcggactaga taaatcagcc ttagacaaag aagtaaccgt
    16981 tacttttggt aatggcgatc aatccactat gaaaactggt tcggttgcaa tcgcggcgat
    17041 tacaagttgt acgaacactt ctaacccata tgttatgtta agcgctggtt tagttgctaa
    17101 aaaagcagtc gaaaaaggct tagaagtacc aaaattcgta aaaacatcct tggcgccagg
    17161 ctctaaagtt gtaacaggtt acttggaaaa agccggctta cttccatatt tagaaaaact
    17221 tgggtttgac cttgttggct atggttgtac gacgtgtatc ggtaattctg gtccgttaaa
    17281 agaagaaatt gaagaagcaa tacaagacag tgatttgctt gtttctgcgg tattaagtgg
    17341 taaccgtaac tttgaagggc gtattcatgc acttgtgaaa gcaaacttcc tagcttcacc
    17401 accactagtc gttgcctatg cgctcgctgg gacaacaaat gtcgacatgc taacagaacc
    17461 aattggacgc ggtaataatg gcgaagaagt cttcttagac gatatttggc caagttcaga
    17521 agaagtgaag gcattagtag aagaaacggt aacaccagaa cttttccgtg aacaatatgc
    17581 tcatgtattt gatgaaaacg aagcttggaa tgcgattgaa acaacagaag atgccctata
    17641 caaatgggat gaaaactcta cgtatattgc gaacccacca ttctttgata atttagcgaa
    17701 agaagctggc aaagtagaaa gcttatctgg tctccgcgtt attggtaaat ttggtgattc
    17761 agttacaact gaccatattt cgccagccgg agcaatcggc aaagataccc cagctggaaa
    17821 attccttcaa gaagaaggcg tggcaattcg tgatttcaac tcatacggtt ctcgtcgtgg
    17881 tcatcatgat gtgatgatgc gcgggacatt tgcgaatatt cgtattaaaa atcaaatcgc
    17941 accaggtaca gaaggtggct atacgactta ctggccaact ggcgaagtga tgtcaattta
    18001 tgatgcttct agaaaatata tcgaaaataa tactggttta gtcattcttg ctggtgacga
    18061 ttatggaatg ggatcctctc gtgactgggc tgccaaagga acgaacttgc taggaattaa
    18121 aacagttatc gcgaaaagct atgaacggat tcatcgttct aaccttgtta tgatgggtgt
    18181 tttaccactt cagttccaac caggtgaaga cgcagaaacg cttggtttaa caggttcaga
    18241 aagcttgcaa gtggaaatcg gtgaagaggt agcgccaaga gaccttgtaa aagtaaccgc
    18301 tgttcgtgaa gacggctcaa gcttcacttt tgaagcactt gcacgttttg actctgaagt
    18361 agaaattgac tattaccgtc acggcggaat tttaccaatg gttcttcgtg gcaaattgaa
    18421 ataactttaa aaagaggcga gcaataaagt tcgtctcttt tttatttttg cttgcaaaaa
    18481 tagaacgtat gttttattat tggttaatag gaggcttgag cgaatgaggt atcagaaaat
    18541 cagttttata gtgactggaa taattgcagc agtaataggg tatcttattt ttacgagcaa
    18601 ctatcacccc gatgttccaa actggctact ctttttattt ttagcattaa gcattgctgt
    18661 ggcagttagt cagtggaaag agaaacgact aatttggagt tgcgtcggac tatttgtggc
    18721 tgttttgatc agtgtgtatt acattttaac tatataggag gaactcgctt tgtctgaaga
    18781 attacgttgc ccttggtcga ttaatgaccc gtttgaacta gaatatcatg atacagaatg
    18841 gtgtgttccg agtaaagacg acacatattt atttgaaatg ctcaatttag agggagcaca
    18901 agctggactc tcatggagat taattttaca taaaagaaaa gcctatcaag aagctttttt
    18961 tcactttgat attgataaat gtgcacgcct aacagacgat gagctggcga cgattgtcga
    19021 agaagcggct attgtaaaga atcgccttaa agtgaaagca gttcgtacaa atgccctagc
    19081 tacgcaaaaa gtccaagctg aattcggctc atttgcaaac tatatttggg gttttacgaa
    19141 taatgaccgt attattaatg aatggcaagg catgggagag gtccctgcaa gcacagaact
    19201 atcagaaaaa atcagtaaag atttaaagaa acgtggtttt aagtttgttg gccctgtaat
    19261 tgtgtattct tatttacaag ctattgggat tttggatgac catttacgtt catgcccatt
    19321 tcatacattt aatagggagg cgacgaaatg attccagcga aattaaaaca aggggatgaa
    19381 attcggatta ttgcaccaag tcgttctatc ggtattatgg ctgacaatca agtggaaatt
    19441 gccgttaagc gcctaacgga catgggtttt aaagtgactt ttggcgaaca tgtagcagaa
    19501 atggattgca tgatgagttc aagcattcgt tcgcgagttg ctgatatcca tgaagccttt
    19561 aatgattcga gtgtcaaagc gattttgacg gttattggtg gttttaatag caatcaattg
    19621 ttgccatatt tggattatga gttaatttcg gaaaatccta aaattttatg tggtttctcc
    19681 gatatcacgg cattagcaac cgctatttat acgcaaacgg aacttatcac ttattcaggc
    19741 gctcattttt caagtttttc aatggagaaa gggctggact acgtaatgga ctcatttagc
    19801 aagtgtttat tgcaaaaaga gccgtttgcg cttaaagaaa gtgctgcatg gagtgacgat
    19861 gaatggtatt tggaccaaga gaacagaaat tttattccga atgagggatt agttgttatg
    19921 caacctggag aggcagaagg aatcatcatt ggcgggaact tatgtacgct taatttactc
    19981 caaggaaccg agtacatgcc taacttagca ggtaccattt tatttattga agatgatttt
    20041 atgactgttc cagaaacatt cgaccgggat ttagaatcgc tattaagtca acccggtgca
    20101 ggtgagatag aagggctggt aatcggtcgt ttccaacaga agacagcgat gacagcggag
    20161 aaattagcat atattattga aacaaaaacg gcattacaaa aaatcccagt tatatctggt
    20221 gcggattttg gtcatacaca gccaattgcg acattcccga ttggcggaac tgcaagaatt
    20281 gatacaaatc agaccgataa aattcaaatt attaggcatt aaaaaaaggc tgtccaatgc
    20341 ggacagcctt tttaatattt aacttaaagc gacatctcgt tttttgaata agaagaaagt
    20401 gaagaaaagg ataatcgctg tataaacacc tagaccggcg attatttgcc aatctgctag
    20461 gccaccagcg attttagaac cgccaactgt gtcatttagg ctgagcaagt tgaagataat
    20521 ccatttcatc caatcgtatt tttcgatagc gagaggtagt aattggcgaa taattccacc
    20581 ggagaatagt acaccaacgc cgacaccaac tgcaagtgct tgtgaacgaa cgacagagga
    20641 gaagaagaaa gcaatagttg cgtatacgat catcagtaag aagttcgtac caagtagcat
    20701 ccacgcatgt tcgaaagcag tcattgcacc cgttgaaggg gagagcggca taaaaataga
    20761 ttgttttggt aaaataaatg aaaagataaa gctagctaca agtaatgtga tagagctaat
    20821 aatgctgtaa acgatacaca ttacgtattt ggaaaatagt atctgacttc tagaataagg
    20881 acgtgtcagt aaaagtttga ttgtcccacc agaaaactct gttgcaacga tgatacttgc
    20941 tacaacaaca acaagcattg tcgcaacggc tcctgagcta cctaatgaag cgaagaaatc
    21001 tgcgcttgaa atacctgctg aattactagc gggtttttca tctgcatcga cataagcttg
    21061 gtaaaaatca atttgttttt ggatagtttc tttggcttct tttgttggag ccgcttgttc
    21121 ttgtgttttt aagtaagcaa cagaatcagt taaagataac gtttcagatt tatacgtagg
    21181 attaccatct ttatctgcgg agttccaata ttcttcttcg ctaaccgggg cacctttatc
    21241 gtcatagtaa gcggtaatac cagcattgct tgcgtcgccg ccttc
//
LOCUS       DASDXX010000028        21030 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.028, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000028 DASDXX010000000
VERSION     DASDXX010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21030
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.028"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(630..2180)
                     /locus_tag="U0280_000843"
     CDS             complement(630..2180)
                     /locus_tag="U0280_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEM2270798.1"
                     /translation="MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESL
                     HRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPE
                     DMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKND
                     QELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKAL
                     EQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDV
                     GGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSLVREKDGDITIGP
                     DSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMT
                     EDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQ
                     YEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLR
                     VKVVGNLV"
     gene            complement(2173..3273)
                     /locus_tag="U0280_000844"
     CDS             complement(2173..3273)
                     /locus_tag="U0280_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF917 domain-containing protein"
                     /protein_id="HEM2270799.1"
                     /translation="MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPI
                     KLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPME
                     AGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIG
                     IMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRE
                     TSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVH
                     FQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTD
                     KGIETVGPRYFGYDVNFEPLEELVKKEERRHV"
     gene            complement(3274..4557)
                     /locus_tag="U0280_000845"
     CDS             complement(3274..4557)
                     /locus_tag="U0280_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEM2270800.1"
                     /translation="MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWE
                     AILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGW
                     FGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVL
                     LFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKS
                     RKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWT
                     TNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMV
                     PPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQL
                     PNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK"
     gene            complement(4691..6286)
                     /locus_tag="U0280_000846"
     CDS             complement(4691..6286)
                     /locus_tag="U0280_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HEM2270801.1"
                     /translation="MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALL
                     EDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMD
                     QKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSV
                     RPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEH
                     ELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWG
                     RNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAEL
                     KSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQG
                     MEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMR
                     PLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKI
                     PESYNLYLAVAIRRILGGNNNNK"
     gene            6442..7389
                     /locus_tag="U0280_000847"
     CDS             6442..7389
                     /locus_tag="U0280_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEM2270802.1"
                     /translation="MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLED
                     VPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGN
                     IVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALP
                     EAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFI
                     DDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLA
                     PYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR"
     gene            7394..8542
                     /locus_tag="U0280_000848"
     CDS             7394..8542
                     /locus_tag="U0280_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEM2270803.1"
                     /translation="MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFI
                     LLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPAS
                     FGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSE
                     KSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKS
                     SAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLL
                     GDQTSKFAPAKGTSKLQDISTAFAEIAPVDNLTLQESLDSNLHSGEKILLFTPCIDTM
                     LMQKVTRLTDNKQLQIITFQSEHSKSMDAPAIFLEPASLLSRWEREAK"
     gene            8539..10698
                     /locus_tag="U0280_000849"
     CDS             8539..10698
                     /locus_tag="U0280_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HEM2270804.1"
                     /translation="MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLS
                     LGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFR
                     SSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNW
                     AIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLP
                     KKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRV
                     ESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPY
                     GTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVS
                     QYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGA
                     DYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTIT
                     NNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNT
                     ADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRR
                     RIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFS
                     RLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK"
     gene            10815..11570
                     /locus_tag="U0280_000850"
     CDS             10815..11570
                     /locus_tag="U0280_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4866 domain-containing protein"
                     /protein_id="HEM2270805.1"
                     /translation="MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRG
                     FEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDK
                     EGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRIN
                     KKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELG
                     VFLPIHHFEKKMLQNIEQVNELVDALREQMVNK"
     gene            11591..12256
                     /locus_tag="U0280_000851"
     CDS             11591..12256
                     /locus_tag="U0280_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HEM2270806.1"
                     /translation="MARSRQISESIGLGLLLALAGGFMDAYSYIERGQVFANAQTGNI
                     LLFGINISEGNWAIAIQYFWPVVSFTVGIAISEVIHRRDIRRLHWRQLSVLIEAVILI
                     GVAFIPLDHNLIANSLISFVCGIQVESFRKMHGRGVATTMCIGNLRSATQNLCDYFEY
                     KEKQYLRNSLLYFTVILSFIIGAVVGNFFIQLFAQYAILVCAFLQFIAFMMMFIDRES
                     KII"
     gene            complement(12300..13025)
                     /locus_tag="U0280_000852"
     CDS             complement(12300..13025)
                     /locus_tag="U0280_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270807.1"
                     /translation="MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVP
                     EGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLYCAIYLGEV
                     RSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVF
                     LGVFWEFYEFAADSFGMNMQKTMLEDGTMLQGHAAVADTMGDLFVDFLGAFVISIIGY
                     FSIRKNKKWMKNFEFKKVDEEVK"
     gene            13259..13807
                     /locus_tag="U0280_000853"
     CDS             13259..13807
                     /locus_tag="U0280_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4240 domain-containing protein"
                     /protein_id="HEM2270808.1"
                     /translation="MKKVSSLLTQDQFWGIIDNSDKGSKLEELLEKLSEDELFGYDYW
                     WNYFHKKSYNQSLWAVAYVVLGGCSDDGFDYFRYWLITRGKAVFTSAVENADTLCGEF
                     DLLTEDEYPENEEVAYLVMDIFENKLGKDFDDAENEAESRIEFEEVSMPPIDFEWDED
                     DEDSIKKVCPNTFAKWWNNDKF"
     gene            complement(13855..14784)
                     /locus_tag="U0280_000854"
     CDS             complement(13855..14784)
                     /locus_tag="U0280_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM2270809.1"
                     /translation="MARHAQKRKARKGRIFVTILVALLILVGVVAVIGYFQYQSSLKE
                     AQNESKLKDYKFNGAKAVGDEINVLLIGSDSRGEDQGRSDSLMIAHYNTKTNTPKLVS
                     IMRDTYVDIPGHGKNKINAAYSYGGPELVRQTIKENFGVDVQYYVVANFEGFPKIVDT
                     LAPEGIKINAEKDMSKNIDANIKKGEQVMDGKTLLQYARFRKDAEGDFGRIRRQQQVL
                     EALKEQAIDVGDVAKIPDVIGKLQGYSSTNIPTGTLMSIGADFLLGKTETMEKFAIPV
                     EGKWHNERIDGAGAVLRLDDMAANAKALQDFLK"
     gene            complement(14921..15235)
                     /locus_tag="U0280_000855"
     CDS             complement(14921..15235)
                     /locus_tag="U0280_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270810.1"
                     /translation="MEEMEQPEKKVIIRGKGIHNKWKWSTIIVSILSVIIISVLSYQL
                     YSVSQNTPENNTNGTMQGPGGGEMPSGTPPSGEPGQAPNSSDDSSDSGTSDSTTSSDG
                     TL"
     gene            15407..17443
                     /locus_tag="U0280_000856"
     CDS             15407..17443
                     /locus_tag="U0280_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEM2270811.1"
                     /translation="MASYGGKKRNNKKAIIIGSIAAVVVLAGIAIYFFIQNQHKDEKN
                     ALAAAETFTSNIAKEKYDKLGSSVSSESLKKVEFTKKEMEDKYQAVYDGIGAKDIKVK
                     NLKSVYDDKENKFNLTYELEMRTSLGKLATQKYKTTISKQDDDWKIDWKPALIFPGMV
                     KTDKVRITEDEAERGQIVDRNGNPLATTGQFAEAGVVPSKLGEGDEKVKNIADISKKL
                     EVSTDYINKQLDQKWVQADSFVPLVTLNKDNLPEATGLTYAQKEMRTYPLNEATSHLI
                     GYVGEVSAEDIEKNPKLSVGDVIGKSGLERYYDKQLRGKNGGAIKIINDQTKQEDTLQ
                     KIDKKDGEEIKLTIDAAVQKKAFDSLGSETGAVTMINPTNGELLALVSTPSYDANQMV
                     LGITSEDYAKYNDDKRLPFLARYANRYAPGSTFKTITATIGLDTGITKPDKVREISGL
                     QWQKDASWGKYFVTRVHDVPKVNMTDALVHSDNIYFAQEGLEIGKDKLTAGLKKFDFD
                     KEYNLPFTMKPAQISNDGLNSEILLADTSYGQGELLMSPIQQAIAYSAIASDGKMPYP
                     KLDTKEKAGKETQATEAASANQVKAALVKTVSDPAGTAHALQIQGHSIAAKTGTAELK
                     EKQGEDGLENGFVYAFDADNPNYLMVGMIENVKGRGGSGLVIDKLKPVIESMYK"
     gene            complement(17485..17987)
                     /locus_tag="U0280_000857"
                     /pseudo
     CDS             complement(17485..17987)
                     /locus_tag="U0280_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463969.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2004 domain-containing protein"
     gene            18125..19393
                     /locus_tag="U0280_000858"
     CDS             18125..19393
                     /locus_tag="U0280_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="module of peptide synthetase"
                     /protein_id="HEM2270812.1"
                     /translation="MVKITSYPAEPSDVKHYISGEKMKNDHHLHTVLTFDNHLNIDVL
                     KKAVMQSTKKLPLLLCHFKETKKGAFWQESVFSAEDLVFLVETQAPETEVDRALVTKL
                     STENGPQICFTVVRADTSDQLVVIMNHMLADGAGFKEYLYLLSELYSNLLENPDYAAN
                     LSLGSRSLKQIFDQLSRKDIKSIFTEKTKQKAVHNPTFPLKGDPKNPKVIWTKLPKED
                     FSEIIHFAKEHEATVNDVLFAAMARTVQQTTGQQEMSIDCPVDLRKYLPSKTSSGITN
                     LTANITCQISADDDLTSFESTLQAVKNSLNPQKNSFAPLRIYYLLELIFKKKNYSVAK
                     KASEKMYSIPKTSFTNIGIIDEEKLVFEGSTLTDCFICGSLKYAPFFQVAATTFRGEL
                     TLSTNLHGTTQDHAWQKDFLEQMISEFPSK"
     gene            complement(19426..20043)
                     /locus_tag="U0280_000859"
     CDS             complement(19426..20043)
                     /locus_tag="U0280_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear targeted protein LntA"
                     /protein_id="HEM2270813.1"
                     /translation="MKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGENEGEQTKTK
                     TNSDKIVKTTSKPKLSTKDLALIKADLAEFEGRELSSEKILKDTIKEESWSDLDFAND
                     NINQMIGTMKRYQQEILNIDAVKRSSEASADTEAFKKVFKEWSDFKIERIQVTIDLLN
                     GKKDSEAAFKKSYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK"
     gene            complement(20199..>21030)
                     /locus_tag="U0280_000860"
     CDS             complement(20199..>21030)
                     /locus_tag="U0280_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2270814.1"
                     /translation="TGATGGLGGYALNYLKELVPMSDIYALVRSEEKGADLKAAGFNI
                     RVGDYSDAESMKQAFVGIDRVLFVSGAPGNRQVEHENVVNAAKAAGVSYIAYTSFAGA
                     DKSTSALAEDHFFTEKVIEKSGIAHTFLRNNWYFENEMPMIGGALSAGKFVYAAENGK
                     VGWALKREYAEVAAKAVAGADFPEILELSGPLMTYEELTKALKEATGKDFDVISSDDK
                     GFVENLVSAGLPQPVAEMFLSFQHDIKNDQLDVTSDDFEKALGKPLTNRVDALRELLK
                     "
BASE COUNT         6350 a         4290 c         3840 g         6550 t
ORIGIN      
        1 cacttccttt gaatgttact ttttatgtaa aatccatgta actgcaataa gatgttcctc
       61 taagtcatcg tattcgctcc attggctctt gttactcatt gtttcttttc cagttcaaag
      121 tccacttccg gggttccctc tagctcttcc accaatggta attgattcta ttcaaataaa
      181 ttcagccatt cgtttcgagt gagatattca tgattttgat acttcacctt gttttttgcg
      241 cgctattcag gcacatatgc tttatctata ataacatctt tcggactact acccaatcca
      301 aaaaagtcat gtgaaaaata cggaacaaac ggtaatattt caattgattt agaagtgaat
      361 gacgcgcggc aagcttttgt tcggttcctt tattcattta tttaccctac tagaatattt
      421 ttagttagcg tttgggttgt ttttctagat aattagtata agaattgatt tatttaaatc
      481 catgtctaaa ataacacaaa ttgtgtcaat atacataatt ttatacatat gggattacgt
      541 tatacaaaaa tagactggaa gcaaagtaat ttcttacttt gtttccagtc tgaagtcagc
      601 aatgcactac tatttacttc ttacttccct taaaccaaat ttcccacaac tttcacgcgc
      661 aatctggttg cattacccgg atgatacgct aatgggattt cttccacttc caccacttca
      721 atcgagtcag tcactgcacc ggctagagtt gcttgttctc tcgctttttg ttcggcatct
      781 tggagcgctt cttcccgctc gatttgagaa tagatgtaga tttgttcgta ttgtccgctg
      841 atttgggaaa tggatgcgcc gattgcgttg gctactgggc cgtttttgtc gcggaaaatt
      901 tgtgcgacac cagagatttc gtctggaata atcacgctac caccgccaac aagtactaga
      961 cttacactcc ccgaactggt tttcatttta tcaatcgcat cttcggtcat ttcagcaatt
     1021 tttttatagg ctttttcggc aaaatcggtt gggatatgtg cgactaattc agggttaccg
     1081 atttctgccc tacctagacg aaccgcgatg tcggtagtgg tcatcgtttt acctccgaaa
     1141 actagtgctt cttcggaaat acggtagcca acgctatctg gtccgattgt tatgtcgcca
     1201 tctttttcgc gaacgagact tcctccacca agtccgatgg aaataatatc tggcattcta
     1261 aagttggtac gcactccgcc aacatcaacc gcaagcgagg actctctagg gaaaccatcc
     1321 gtcagcactc caatatcaga agtcgtgcca ccaacatcga gaaccatcgc gtctttaagt
     1381 cccgccaagt aggatgcgcc gcggatactg ttcgttggtc cacaagcaat tgtcaaaatc
     1441 gggaattgtc ttgcatagtt tagtgacatt aaagtcccgt cgttttggca aagatagatt
     1501 tcagcatgcg caattccttc ttgttctagt gctttttcaa aaccatcact cgttgccgca
     1561 ataactttga aaagggctgc gtttaaaatc gtcgcatttt cgcgttcaat cagtccaaca
     1621 gaacctacgg aagaggaaat cgaaaccgga atatctgcgc ctagttcttc ttcaataatt
     1681 ttttgaacag ctaattcctg atcgtttttc aaggaagaaa agacgccaac aactgcgacg
     1741 gattccactt cacctttcca actagctaag gtttcacgga tttctgcttc gttgatttct
     1801 gatagcacct gaccatcata ctcatagccg ccaccagtta atttatattt tccagataaa
     1861 aagccaacca tgtcttccgg ccaagctgta tatggtaaaa cggatgctgt tgcaggatag
     1921 cctaaacgaa gaacgccaac ttttgctaat tttttacgtt ccacaatcgc gttcgtacac
     1981 tgggttgttc caagcatggc gtgcgttact ttcgagcgat caatgcccgt ttcgctcaat
     2041 acgcgatgaa gtgactcagt aattcctgtt tcaatatctt cactcgttgg catttttaca
     2101 ctatgaatga gttgttgatt ttcatctaaa ataacggcat cggtgtttgt accaccaacg
     2161 tcaattccaa ttttatacat gacggcgttc ctcctttttg acaagttctt ctagtggttc
     2221 aaaattgaca tcatagccga aatagcgcgg tccaactgtt tcgatacctt tgtccgttct
     2281 ccaagcatca tcagctggta gtgccatcac gcggacacgt tttccgtatt tgagcgcttc
     2341 cgtcgttacc ggcatcagcg tttcaaggtc taccatacaa attaaatctg gtgtaattgc
     2401 tatcggttcg ccatttttct ccgcaacaag attttcgttt tggaaatgaa caatgacttc
     2461 gctacctgtg tctttgttta gtccgtcgat tttcacacga ccaaagttga agcctgcacg
     2521 cgtttcccga acaacatcgg taattttccc ttcgaataaa tgataaccgt gcgttacatc
     2581 taataatttt tgtagttttt ctgcttcgtc catcgaagtt tcgcggatta ctttaccgat
     2641 ttcttcagat agtgtcacga tatttttaat actactttgc ttaatttgcg caccgttaca
     2701 cggatacagg ctcacaagag aactcgcgcc catttcgacc gttgtcacac gtgcaagtcg
     2761 ttcggtccat ttattatcaa tcgtttccat gatgccaata ttaccttttt catcggtgat
     2821 agccattggt gttgcggaaa tcccgtctag atggaacgtc accatttgta gttctggaaa
     2881 agctcggccc atgccgtcac agtccaccat tggcaaacct agttgagccg ccacaacgat
     2941 tgggatcatt gagtttactc caccagcttc cattggaaat gttcctttta cttctttgcc
     3001 tacatatcta cctaattttt caaatacacg aacgaattcg tcgcctttag gaaatttttc
     3061 aatgagtaca gacggtgccc ccatcatcgc ggctggaatg aaataatcat catccgcaat
     3121 ttcttctggg gataacagtt taattggtcc atgtttttta attgcagtta atgccatcat
     3181 cttgcctata tatggatctc ctccgccacc agtgccaaga aacgcagcac caatcgcgat
     3241 attttcaata gcttgttcat ctaaataacg catttatttt ccctccaagt tttctacatt
     3301 gttggttttc ccgctcagca ctttcgctcc gatcaagtaa acagccagcg acaagataat
     3361 accgataagt ggttgatttg gtaattgtgg tagctccggg aaaaatgtca aaatgactgg
     3421 aatccccgca atgactgcac caactagcca agaacttaca cccagccagt tgacacctgg
     3481 tactggcgcc catttggatt tatctccttt ttggacaatc cagtaagaag caatcattac
     3541 tcctgcaacg ggtggtacca ttgctgaaag tacggacata attggaacaa agtggtttaa
     3601 aattccgata accgcgagta ttgttccaag tccgcctgca actgccactg ctactttgtg
     3661 atatttttca gagatgttaa atacattgat aatcgcaata cctcccgaaa aggcatttac
     3721 tgcgtttgtt gtccatgcag caagtatcaa gccgataata ccaagaactg gtaatcctaa
     3781 gtttgtaaat acgacagaaa tatctgctgt acccgccgta agtgcaagta ccgctccaac
     3841 cgtaatcata agcacacctg atggcaaaat cccgacaata gctgctttta caacatcttt
     3901 acgcgatttt gtatattgag aatagtctcc tgcaattact gcccctaacg caaatgagcc
     3961 aattgtaatt gctagtcctg tcataaacga catgcttcct gctggtttat aattttcaac
     4021 aatagctagt ccgccatcgt ttaaagaaac aacaagtccg taaatacata caaatagtaa
     4081 aactggtact gcgatataat ttaaaatact caaaatacga ataccataaa tagctgaaag
     4141 taacatgata actccccaaa ttaaggaaga aactggtact ggaagattaa ttccataaat
     4201 acctagaaac tgtgagaatg ctgcaccaca tacattggct tgaataccaa accatcctag
     4261 acaagcaatc gctaaaagaa tagatatgat ttttttcgac ccttgttctc caaaaacctg
     4321 tgaagctaca ctaactgctg gaatacctaa atcgctactt tgcattcctt gatatatcat
     4381 aaataagaca ataacgccgt atcctaaaag tgctattaaa attgcttccc aaagaggcat
     4441 acctgaaatt aaagttcctc caactagtag actcggtaca caaatcattg ctccggtcca
     4501 tacaaatgct aaactctgcc aggattgcgt ttgctccact gatttcttct ctgtcattat
     4561 gttccgcccc tttttcttga atttgttata ttaatgacta attatataag aactagctat
     4621 catttgtatt tatcagaatt gaaaaaaaat agcgcaatct ttgtcgtttt ggacaaaaaa
     4681 tgcactattt ttatttatta ttgttatttc caccaagaat ccgtcgaatc gccactgcta
     4741 aataaaggtt gtaggattct gggatttttg tcgccggata ttgcaataac tcatttatcc
     4801 gttgtattcg atatttaatc gtatttttat gcaggaatag tagttcagct gcttgattat
     4861 aattggattc accttccagt aaaaacacag acagcgtttc aattagttca tcattatcct
     4921 ctaaaggctt tagtggcctc atttgttctg caattgctag ttctcctcga tctactattt
     4981 ccacacattt tgctgcgaaa tcaatttctt gaagagaata aatggacttg ttcgcataaa
     5041 tcgcatttgc cgcattttta tattcattaa cgagcgaata agcgctttgc acatctgacg
     5101 tttgctccat tccttggcaa acggtaattt tcaagtctat cccatgttct ttcatcatca
     5161 tcgcaaactc attggctgta tgcgtccggt cccgctgcgc cactgaatta tcaagtaaaa
     5221 caacgatatt gtcttcaaat aaatcaatta atgaaacttg gaagtgacta gctacaaaac
     5281 ttttcagttc agctaaaact tgctcattgt cgcgaatttc ttcggttttt acaagccaca
     5341 tccatttaat agaagaaaca tccacattta aaatcttacc aagtcgccgc attttgacac
     5401 tttcatcatt taaaatggct ttcatcagtt cagctgtact gatttcgaca tagtttctgc
     5461 cccataaatt cataaatact tggactactt cggtaatttg catgactaca tcggctgtta
     5521 atacgccttt ttctttcatc ataaataagt gcatcgcttg cataccgtct tgaaaaatcg
     5581 gttttctggc cgtataaaaa tcgcgttcat ccaaggtaag ctgtacaagc tcatgttcac
     5641 cgatttgttt agatgcctca attatccgtt caaaatccca gtggcgcgtt cgtggccaag
     5701 tgatagaatt aattacttgg aaagaattat ccgttaagac gagcgaagta tgcgttctat
     5761 cagacaaaat tttcagtgtg gtatctatat ttcgttgtgg cggtcgcaca ctcgaaatct
     5821 gttctaatga ctcggttaca aagttggtat ctgtcatttc ttgcttcaca atcgcttcga
     5881 ctacttcata aatcacttcg ctatatctaa gtgacatctc gttttccggc atcacgataa
     5941 tggtaaaatc aagttcattt gcaaaatcaa tcagtttttg atccattttc ggcacaaaaa
     6001 ttcccacgta gtaaagaatt aaagcaactt cgccaacctt atgtaatcgc tcaattgtcc
     6061 gacactgtgc ctcaacatcg tcacgaatat tcacaaaagc cgatacaact atttcactgc
     6121 cataaaattc atcattatca aataaatcat cttctaaaag agctacctct gtatattcta
     6181 aaacagaaat agacgaaaca agcttagata atccagattt tccagagact actttcgctt
     6241 cttttaaaga tggtaatttc attaaatctg ccaattttac gctcaaagtt cgccacctcc
     6301 agttattcta agtgtaaaca atctcctaga aaaagtccat gccacgttaa atcttttaca
     6361 ttcaaggcct attatagtag cattgaacca tgaataaaca tattctgatt aaaaacataa
     6421 gaaaagaaac ggaggcaaat tatgtctata gagccatcca ttaaaataga agaaattatt
     6481 aatgaagttg aaaaagtaat cgtcggtaaa cgacatgttg ttaaattaag cttaactgcc
     6541 ctacttgcgg gtggtcacgt attattagaa gatgttcccg gtgttggtaa aacgatgatg
     6601 gtccgcaccc tttctaaaac aattggtgtt tcctttaaac gaattcaatt tacaccagat
     6661 ttacttcccg cagatgtgac gggggtttcg attttcaatc ctgaaacacg tgattttgaa
     6721 ttccgtccag gtcctgtcat gggaaatatt gttcttgcgg atgaaattaa tcgtactgcg
     6781 cctcgaactc aagccgcttt acttgaaggt atggctgaga atagtgtgac agtggatggt
     6841 attacgcgca aacttgctaa cccatttttc gttatggcga cgcaaaatcc gattgaatac
     6901 gaaggaacgt atgcccttcc agaagcacaa ttagaccgat ttttactcaa aattaatatt
     6961 ggttacccga cagtcgaaga agaaatgcag ctacttacat taaaacaata ccaagatcca
     7021 cttgatcaaa cgcagcaagt ggtgacgctc agcgaattac tggacctaaa aaacaaagca
     7081 aagcaagtct ttattgatga tgttttaaaa aattatatta ttcgcctagt tgatgcgact
     7141 cgaaaacacc cttccgttgc gctcggaatt agtccgcgtg gctcgctcgc tttcatgcaa
     7201 gccgctcaag cttttgcgct tattgaaggt cgagattatg tgattcctga tgatattcag
     7261 tatttagcac cgtatatttt cactcatcgt ctcattttga agtctgaagc ttattataat
     7321 gaggaaacag ccgaatccat tattgcttcc attttgaaaa acacgtcagt tccggtagaa
     7381 aagaggtagc taaatgttga aaaaacgcct cctattagca tttcggtgga ttattatgct
     7441 aattatttac gctgggcttt ggacttatac gttatttcaa ggtgatactg ctagctggtt
     7501 tttaacctat ttctttagtt ttatcctgtt acttttattt ttgtcctcga tttatccact
     7561 aaaagcgtgg aaagtgaatc ggcgttttgt taaaaatacc tatcatgatg gcgatttaat
     7621 tgatatgcaa gtatcattca ctcgaaaatc gcgttatccg gtgggttatt tgctattcca
     7681 acaaaaaata cccgctagtt ttggcaatgt gagcgcccgc caacaagtgg tttatccgct
     7741 ttttaaaaag catttcacgg ttacactagc tggatttgta ggcgttcgtg ggattcattc
     7801 atttccgcca gtggatgtag aaactagtga tgctttcggc ttgttagaac gttcgcgcca
     7861 actatcttcc gaaaaatcgc tcactattta tccaacctat tttccggatg tattagaaaa
     7921 aatcagtgaa gcttctccag aaaacgaacg caatgccgct tattggacgc ttaagaaaaa
     7981 cagcaatttg cacagtttgc gcgaattttc ttctggtgac cggatttctc ttattgactg
     8041 gaaatcttct gctaaaagcg accaactgat gactagagaa tttgaaaata gtgcaacatc
     8101 acggttatcc gtcatttttt acggagcgag ccatcccaat tttgaattat cacttcgggc
     8161 ggcttactcg tttattcgca aaatctccga agataatgga gaaattcgtg ttactctttt
     8221 aggcgatcaa acaagtaaat ttgctccggc gaaaggtacg agtaaacttc aagatatatc
     8281 gactgctttt gcagaaatcg ccccggtaga taatttaacg ctgcaagaat cgcttgatag
     8341 taatttacat tctggagaga aaatccttct attcacgcca tgtattgata cgatgttaat
     8401 gcaaaaagtg actcgtttaa cggataataa acagctccaa atcattactt ttcaatcaga
     8461 gcattctaaa tcgatggatg ctccagcgat tttccttgag ccagcaagtc ttctaagcag
     8521 atgggagcgt gaagctaaat gaaaagatat ttaacgctcg tcatgctatt tattctatct
     8581 gttttgctta tctctgagtg gatttatcca ttcgcagagc tgaccgaact ctctacagca
     8641 aactggatta ttttgtttat aaccctttca ctcggtagtt ttttcctccg tttgaaatat
     8701 tattggacaa tcccgcttca tatcgtgatg attatcttcg tttcaggaat ttactacgct
     8761 aaaggtggga ttttggcagg gaattggttt gtttcttttt tccaaatcac ctttaatggg
     8821 tttagagata tggtacagtt tcgctcgtcc gatatttcta tggactttat tttaatcgtt
     8881 tttttaattg ctttatggct tttgagttat attactactt atagtattct gcgcaaacag
     8941 cgggttatga gtgttttagt tttaactgtt gcttatttag cggttattaa tacttttaca
     9001 gattataaca gtaattgggc catcgtccga actgtattag aaggattttt attacttcat
     9061 cttgcactgg caagtcggat tgcagcacca aatagaatta gcgcggactc cttaaaacgt
     9121 aatggtttgt tttatcatat ttttgtgatt ttgttactgg ccgtatttgt ttttagttcg
     9181 ttaatgcttc cgaaaaaagc accgatcttc cctgatccgg taccgacgat aaaaaatgcg
     9241 cttggaatta atacaacgcg cacggtgggt tatagtgaag atgatacgac acttggtggt
     9301 gctctcaaaa aggataatgc tactgtattc acggcccggg cggaaaaagg gcattactgg
     9361 cgtgtagaat cgaaaacggt ctatactggc actggctggg caaatgcaaa ttccgcggat
     9421 gtcatatctt tttcttccgg tgataatttc cctattcaac tcacagaaca aacaactggt
     9481 gctacaaaca cggccgaaat tagctttgct tcttctaatg attacatgcc ttatccatat
     9541 ggaacgcaaa cagttaatgg cgcagtagat tcatttagtg ccaatttaac cattgagcgg
     9601 gttggaccag tggatacaat caaaaattat acggtccaat taaaaacacc cgtttataat
     9661 attgaaaaaa tgcagaatgc cgactttagc acactttcta atgcttttgt ttcccaatat
     9721 acccaaacac caaaagactt accagaccgg gtgacaaaac ttgccaataa agtaacaaaa
     9781 gacgctgatt caatttatga caaaacgaaa gcaatcgaac gctatttaag cgcttctggc
     9841 acctttactt atagtacaga ggatgcgaaa gaaacgccta ggggagccga ttatgtcgat
     9901 caatttttat ttgaaacgca aattgggtat tgtgacaatt tttctacttc catggtagtc
     9961 atgcttcgat cgcttgggat tccagcaaga tgggccaagg gctacacacc tggtgagggt
    10021 gagaaaaaag aaaatgatgc taaaacgact tatacaatca caaataacaa tgcacattct
    10081 tggccggaag tgtttttccc aggaactgga tgggttccat ttgagccaac agcaacattc
    10141 tccaatcccg aaaacttcca agaaccaaca actgaaacag ctaataaacc tgaaacacct
    10201 aatgatagta cgagtacgcc agaaacacca aatacagccg ataaaacacc agaacaagat
    10261 aacggtagca gctccacagg tgaaacaccg aaaaaagaag aacctaaaac agaaacagcg
    10321 gcctctaatt tcgaaattcc gtcttgggtt tggtggattc ctgctggact agttgtgaca
    10381 ctgctcgcac tagctattat attcagacgt agaattcgta gatatttatt gcttcgttct
    10441 ctgagaaata gtccagaatt tggcaaaacc tatcatagac ttatgaaatt acttgcttct
    10501 tatggttatg tccgcgaatc gagtgaaacg ttacgtcatt ttagcaccag agtggatgct
    10561 gaattaacaa cgacagaatt ttcgcgacta acgaaaatgt atgaagccca aatttatagt
    10621 aataacttaa cggaaaaagt gataactgcg gaagaaacgc agcttgtgca acaagttata
    10681 gctcgattaa ctaaataaac agagaaaaag cgcctaagaa aatattcatg gcgctttttc
    10741 ttatgtaata tttttatctt ttcttcgtaa atatgcgata atgttaacat gaataaaata
    10801 aaggagactt gaaaatgaca actattttcc caaaagaaca aaatgtcgct ccccttttcg
    10861 aacagatatt ggctaatcca acagcttgca gacgttttaa agatgtattt ctagataatt
    10921 tagagagcta ccaagagacg cgtggttttg aaaaagatga tactcttttt gctaaaatta
    10981 ttttgtcggc ttataggcaa agtgatgtaa gtgccttgtt gttaggtgtt tgcgggagaa
    11041 cattattcga acttctcaga caagctttcc ttattcctaa aaaattaaca gtggataacc
    11101 cgttcttttt aacagataaa gaaggtaatt ttatagccaa gaaggacgat atttctaacc
    11161 gcgaacagga gaaatttcaa gagatttatc aatcggattt gcatcattct gaaacaacga
    11221 ttttcttagt agatgatgat gatatcgttc attcctacga gccagatttt tcgatttcca
    11281 ccaaacgaat caataaaaaa agagggattt tggtactgta ctctcttcct gatactttaa
    11341 aattaggaat gactgagtcg gaagtctatg cgtttatttg gaaaactttc ttgcatatac
    11401 aggaaatcat tccatccagc cgaattttct acggacaaga aacatcagaa aatgcagatg
    11461 aacttggcgt atttcttcca attcaccatt ttgagaaaaa aatgctgcaa aatattgagc
    11521 aagttaatga gctagttgat gctcttcgtg aacaaatggt taataaataa gaaaaaaagg
    11581 atgaaaaatc atggcaagat ctagacaaat ttcagaatca atcggtttgg ggcttttact
    11641 tgctctggct ggcggattta tggatgctta ctcttacatt gaaagaggtc aggtattcgc
    11701 taatgcgcag actgggaaca tacttttatt tggaattaat atttcggagg ggaactgggc
    11761 tatcgcaatt cagtattttt ggccggttgt ctcttttacg gtcggaattg cgatatctga
    11821 agtgattcat cggcgtgata ttaggcgtct tcactggcgc cagctttctg tcttgatcga
    11881 agcggtaatt ttgattgggg tcgcatttat tccacttgat cataatctga ttgccaattc
    11941 gctcatatct tttgtatgtg gtattcaggt agaaagcttc cgaaaaatgc atggtagagg
    12001 ggttgcgacg acgatgtgca tagggaattt gcggagcgct acccaaaact tatgtgatta
    12061 tttcgagtac aaggaaaaac aatatttgcg taacagcttg ctatatttta ccgttattct
    12121 tagttttatc attggtgcgg ttgtagggaa tttctttatt cagttattcg cacaatatgc
    12181 tattctcgtt tgtgcatttt tacagtttat cgcctttatg atgatgttta ttgatagaga
    12241 aagtaaaata atataaaaaa actgccaaca aaatgatttc tcactttgtt ggcagttttt
    12301 tattttactt cttcatctac ttttttaaat tcgaagttct tcatccattt tttatttttg
    12361 cgaatggaga agtagccgat gatggatatc acgaaagccc cgaggaaatc gacgaacaga
    12421 tcgcccattg tatcagcaac tgctgcatga ccttgaagca tcgtgccatc ttctagcatt
    12481 gttttttgca tgttcattcc aaagctatcg gctgcaaatt catagaactc ccagaaaaca
    12541 cccaagaaaa cagcaaagct acaagcaaat aatgcaacga aaaccggact catcgaaaga
    12601 gtaatccgtt catcattatt cagtaagctc acaatagaaa aaccaagtcc cccaagcatt
    12661 gccccactaa acgtatgtag aatcgtatcc cagttaggaa ttaaataata gaaactacga
    12721 acttcgccaa gataaatggc acaatataag aaaacgataa aaacaatata catcgcattc
    12781 ggaatgacga atttcatttt tttactaatg atggatggta agaatagaac taccacgcca
    12841 agtacacact gcataagcat aagtgagtag tcgccctttg tttgttgtcc ttctggaaca
    12901 ttaccagatg gcgctgtaat taagttaact gttgcataaa ccatcgaaac tacgagcgtt
    12961 actaatacaa aaatagccaa aatctgtgcc cagttccatt ttcttttctt tgttttgtcc
    13021 ttcatgaagc gtctcacccc tttttaaaat atgtattcat tataatctat gtgaagcgaa
    13081 aaaagaaatt taaaaccagc ttgccgcttc ttcataacgc ttttgtgaca atttcctgtc
    13141 taaaatcagc tatattttgc gtttctcaca catatacttt aataccgctt taccatgatt
    13201 tttaattttg ttacactaaa cacatactat atgaatcttt taactggagg aaaatcaaat
    13261 gaaaaaagta tcatctttat taacccaaga tcagttttgg ggaattattg ataactctga
    13321 caaaggcagc aaattagaag aactactaga aaagttgagt gaggatgaac tttttggtta
    13381 tgattattgg tggaactact ttcataaaaa atcttataac caatcgctct gggctgttgc
    13441 ttacgtagta ttaggtggct gtagtgatga tggatttgac tatttccgtt attggttaat
    13501 aacaagaggt aaggctgtat tcacatctgc tgtggaaaat gccgatacgc tttgcggtga
    13561 atttgattta ttaacagagg atgaatatcc tgaaaatgaa gaggtagctt acttagtgat
    13621 ggatattttc gagaacaaac tagggaaaga ctttgacgat gctgaaaatg aagcagagag
    13681 tagaattgag tttgaagaag tatctatgcc tccaatagat tttgagtggg atgaagacga
    13741 cgaagattct atcaaaaaag tatgcccaaa cacttttgca aaatggtgga ataacgacaa
    13801 attctaatat aaaaacacgg aaatcctatt aatgaggact tccgtgtttt tttgttattt
    13861 caaaaaatct tgtaaagctt ttgcgttagc agccatatca tctaaacgaa gcactgctcc
    13921 cgctccatca attcgctcat tgtgccattt cccttcaaca ggaatcgcga atttttccat
    13981 tgtttctgtt tttcctagta ggaaatctgc gccaatggac attaatgttc ctgttgggat
    14041 attagtggaa gaataacctt gtagttttcc gataacatca gggatttttg ccacgtcacc
    14101 aacatcaatc gcctgttctt tcaaagcttc taatacttgt tgttgacgac gaattcgacc
    14161 gaagtctcct tctgcatctt tacggaagcg agcatattgt aacaatgttt taccatccat
    14221 tacttgttcg ccttttttaa tgtttgcgtc aatatttttc gacatatctt tctctgcgtt
    14281 gattttgatt ccttctggtg caagtgtatc aacaatctta gggaaacctt caaaattggc
    14341 tactacataa tattgtacgt ctactccaaa attttcttta atcgtttggc gtacaagttc
    14401 tggtccgccg tatgaatatg ctgcattgat tttgtttttg ccgtgtcctg gaatatctac
    14461 gtatgtatca cgcatgatcg ataccagttt tggcgtattt gttttcgtat tataatgagc
    14521 aatcatcaag ctgtctgaac ggccttggtc ttcaccgcga gagtcactac cgataagtag
    14581 tacattgatt tcatcgccaa ctgccttggc accattgaat ttgtagtctt ttaatttact
    14641 ttcattttgc gcttctttta agctagattg atattggaaa taacctataa ctgcaactac
    14701 accaactaaa attaataggg ctacaagaat cgtaacaaaa attctacctt tgcgcgcttt
    14761 tcttttttgt gcatgtcttg ccatatttca cacctctttt attgtaactt acttccatat
    14821 tacaataaaa tgacaaaaaa taggagcgat aattccataa gattttttaa agattggaaa
    14881 aagcccccta aaatgatgat ttctagaggg ctcgcaaata ttaaagggtt ccgtcgctgc
    14941 ttgtagtact atcacttgtt ccagagtcag aactatcatc tgaactattt ggcgcttggc
    15001 caggttcacc ggacggcggc gttccactcg gcatctcccc tccaccagga ccttgcatgg
    15061 ttccattagt attattttcc ggggtatttt gactaactga atacagctga taacttaaaa
    15121 cactaataat tatgacagaa agaatactga caataatcgt gctccacttc catttattgt
    15181 ggatgccttt cccacgaata atgaccttct tttctggttg ttccatctct tccatccaac
    15241 atcatccttt cgttaccact actttaccaa gcaaataaga acaaattatg acatgaatta
    15301 gaaaaaaata tgtcgggcaa atctaaagtt ttctttaatt ttttcaactt ttttagaagt
    15361 gtttggtata attaattgaa tataacatga aattaagggg tgtattatgg ctagttatgg
    15421 tgggaaaaag aggaataaca aaaaagcaat tatcattgga agcattgccg ctgttgtcgt
    15481 cctcgcaggc attgccattt actttttcat tcaaaatcaa cacaaagatg aaaaaaatgc
    15541 tttagcagcc gcagaaactt ttacatcaaa tatcgctaaa gaaaagtacg acaagttggg
    15601 aagtagcgtc tcaagtgaat ccctgaaaaa agtcgaattt acaaagaaag aaatggaaga
    15661 taagtatcaa gctgtttacg acgggattgg cgcaaaagat attaaagtaa aaaatctaaa
    15721 atctgtctat gatgacaaag aaaacaaatt caacttaaca tacgaactag aaatgcggac
    15781 tagcctcggg aaactcgcta cacaaaaata caaaacgact atttccaagc aagatgatga
    15841 ctggaaaatc gactggaaac cagctctcat tttccccgga atggtgaaaa cagataaggt
    15901 gcgcatcacg gaagacgaag cagagcgtgg tcaaatagtg gacagaaatg gtaatccact
    15961 cgcgactact ggtcaatttg ccgaagctgg tgtagtgcct tcgaagcttg gtgaaggcga
    16021 cgagaaagtg aaaaacattg cggatattag caaaaaacta gaagtctcca ctgattacat
    16081 caacaaacag ctcgatcaaa aatgggtcca agcagatagc ttcgttcctt tagttacatt
    16141 gaataaagat aatctacctg aggctactgg acttacgtat gctcaaaaag aaatgcggac
    16201 gtacccatta aatgaagcaa cctcgcattt gattggttat gtcggtgaag ttagcgccga
    16261 agacattgaa aaaaatccaa aactcagcgt tggcgatgtc attgggaaaa gtggcttaga
    16321 acgttactat gacaaacaac tgcgcggtaa aaatggtggc gcaattaaaa tcatcaatga
    16381 ccaaaccaag caagaagata ctttacaaaa aatcgataaa aaagatggcg aagaaattaa
    16441 actaacgatt gatgcagccg ttcagaagaa agcttttgat agcctcggtt ccgaaactgg
    16501 tgctgtgacc atgattaatc cgacaaatgg cgaactatta gcgttagtga gcaccccttc
    16561 ttatgatgcc aaccaaatgg tgctcgggat cacttccgaa gattacgcaa aatataatga
    16621 cgacaaacgc ctacctttcc tagcaagata cgcaaatcgt tacgcaccag gctctacctt
    16681 taaaacaatt acagccacaa ttgggctgga cactggtatt acaaaacctg ataaagtccg
    16741 tgaaatttct ggcttacagt ggcaaaaaga tgcttcatgg ggcaagtatt ttgtcactcg
    16801 tgtccatgat gttccaaaag taaatatgac ggatgcgctt gtgcactctg ataacattta
    16861 cttcgctcaa gaaggtctag aaatcggcaa agataaacta actgctggct tgaaaaaatt
    16921 cgattttgat aaggaatata acttaccttt cacaatgaaa ccagcacaaa tttcgaatga
    16981 tgggctgaac tcggaaatat tactagctga cacatcttac ggacaaggtg aattactgat
    17041 gtcgccaatt caacaagcga ttgcatactc ggccattgca agcgacggaa aaatgcctta
    17101 tccaaaacta gatacaaaag aaaaagctgg caaggaaaca caagcaaccg aagccgcttc
    17161 tgccaaccaa gtcaaagcag ctttagtcaa aactgtttct gatccagctg gtacagcaca
    17221 cgccctacaa atccaaggtc atagtatcgc agccaaaacc ggtacagccg aactaaaaga
    17281 aaaacaaggc gaagatggcc ttgaaaatgg ttttgtttac gccttcgatg ccgacaatcc
    17341 caattacctc atggtaggaa tgattgaaaa cgtcaaaggt cgcggtggta gcggacttgt
    17401 aattgataag ctaaaaccag ttattgaaag tatgtataaa taaaaaagag ccattctgtt
    17461 cgcgaacaga atggctcttt tttgttaact ttcatgggtt aattcagtaa tttctccttt
    17521 tgtattaaaa cgaacaacta aaagttcatc gctaacttct ggtaatagtt tgaaatcgaa
    17581 tgttaaatcc aactcattat tggcattttc cgaaaaccaa acgcctgaca aaactagttt
    17641 atcgattaag atttcctttg ttatattttc tagcgcatca cattcggtaa cttctaaaac
    17701 cgcttcgggc aattcatctg tatgaaaatt aaaataaata gtaagcgtat catttccatc
    17761 aaattgctct aaaatagttt tttcgcttct aggtgtagtt ccggaatttg atccgttaaa
    17821 gtaacgatat ctttaaaata atcttctgaa gtaagctttt caaaaatact ataatcaacc
    17881 tttacttctt tgccatccaa aggaattacg gcgtccatca tcgttccatt ttcttgcgta
    17941 tagcttagtg ttcctagtaa cttggttgtt aatgttctgt ttgtcatgtt cggtgcctcc
    18001 tagaaatagt agcttgcata cgctcagtat aacttaaact cactttgatc cgcaacttgt
    18061 ttcgcagcac tgctttcagg gaaactatta acaactattt aaaccgaaga aagaaggaag
    18121 tcccatggta aaaatcacga gttatcccgc tgaaccttct gatgttaaac attatatttc
    18181 tggagaaaaa atgaaaaatg accaccattt gcatacggta cttacgtttg ataatcattt
    18241 aaatatagac gttctaaaaa aagcagtgat gcagtctact aaaaaacttc cgctattact
    18301 ttgtcatttt aaagaaacga aaaaaggtgc tttttggcaa gaaagtgttt tttctgcgga
    18361 ggatttggtt ttcttagtgg aaacgcaagc gccagaaacc gaagtggacc gagcacttgt
    18421 aacgaagctt tccacagaaa atgggccgca aatttgcttt actgttgttc gggctgatac
    18481 ttctgatcag cttgtggtta ttatgaatca tatgttagca gatggcgctg gatttaagga
    18541 atatctttat ttattgagtg agctttattc taatctgctt gaaaatccgg attatgcggc
    18601 gaatttgagc ttaggttccc ggagtttaaa gcaaattttt gatcaacttt cgcgtaaaga
    18661 tataaagtcc atttttacgg aaaaaacgaa gcaaaaagct gtccataacc caactttccc
    18721 tcttaaaggt gacccgaaaa atccgaaagt tatttggact aagctaccaa aagaggattt
    18781 ttcggaaatc atccactttg caaaagagca cgaggcaact gtgaatgatg ttctgttcgc
    18841 cgcaatggcg cgcactgttc agcaaacaac agggcaacaa gaaatgtcaa ttgattgccc
    18901 ggtggatctc cgtaagtatt tgccgagtaa gaccagtagc ggaattacca atctcaccgc
    18961 caatattaca tgccaaatca gcgcagacga tgacctaacg tcatttgaaa gtacactcca
    19021 agccgtcaaa aattcactca atccacaaaa aaacagcttt gcacctctac gaatttatta
    19081 tttattggaa ctgattttca agaaaaagaa ctactctgtt gcaaaaaaag cttctgaaaa
    19141 aatgtattct attccgaaaa caagttttac gaatataggt attatcgatg aggaaaaact
    19201 cgtttttgaa ggtagcactt taacagattg ttttatttgt ggttctttaa agtatgcgcc
    19261 gtttttccaa gtcgctgcta caactttccg cggcgagctg acactgagta ctaatttgca
    19321 tggtactacg caagatcatg cttggcagaa agactttttg gagcagatga tttcggaatt
    19381 tccttctaaa taagaaaaag ctatcctcag caggatggct ttttcttatt tctgactatc
    19441 caataattcg tagcctactt tcaagttatt taaggctgtt tgtaatttat tcgtgcgcac
    19501 ttttttaaag ataatttgat ttggatatga ttttttaaat gcagcttcac tatctttttt
    19561 accatttagt aaatcgatag ttacttgtat ccgctctatt ttgaaatcac tccattcttt
    19621 gaaaaccttt ttaaatgcct ccgtatccgc cgaggcttct gaacttcttt taaccgcatc
    19681 tatatttaaa atttcttgct gatatcgttt catcgtgcca atcatttggt taatattatc
    19741 attcgcaaaa tccaaatccg accaactttc ttctttaatt gtatctttca aaattttttc
    19801 tgaagaaagt tcccgacctt caaattctgc taaatcagct ttaatcaagg ctaaatcttt
    19861 ggttgaaagc ttgggcttgc tcgtcgtttt tacaatttta tcgctgttag tttttgtctt
    19921 cgtttgttca ccttcattct ctcctgttgt taaggctatt ataactacaa aaactgcgcc
    19981 tattattact accactttcc acatttttga taatccgtta aaccaagcaa ctaacttctt
    20041 cactcgtttt ccttctttca tttaataaat aaagagcata taaaattata gcctcattct
    20101 tatcaaatgt ttaaaaggtc gtataaatac tactgaaaag ataataaaat gcgcagtaaa
    20161 aaaacagcct acctcaaatc aaggtaggct gtcccttttt atttcaacaa ttcccgaagt
    20221 gcatctacgc gattcgttaa tggttttcct aatgcttttt caaaatcatc agaagtaaca
    20281 tctaattggt cgttcttaat gtcgtgttgg aaggataaga acatttctgc gacaggttgt
    20341 ggtaaaccgg cagaaactaa attttctaca aatcctttat catctgaaga aataacgtcg
    20401 aaatcttttc cagttgcttc ttttaatgct tttgtaagtt cttcgtatgt catgagtggg
    20461 ccagataatt caaggatttc tgggaagtca gcgcccgcaa cagcttttgc ggctacttct
    20521 gcgtattcgc gttttaatgc ccagccaact tttccatttt cagcagcgta tacaaatttt
    20581 ccagcactta atgcgccacc aatcattggc atttcatttt cgaagtacca gttgttacgc
    20641 aagaaagtgt gcgcgattcc ggatttttcg attacttttt cggtaaagaa atgatcttct
    20701 gctaaagcgc ttgtggattt atctgcgcct gcaaaacttg tgtaagcaat gtaagaaaca
    20761 cctgctgctt ttgccgcatt taccacgttt tcgtgttcta cttggcgatt accaggagcg
    20821 cccgatacaa ataatacacg gtcgattcct acgaatgctt gcttcattga ttctgcatca
    20881 ctataatcac caactcggat gttaaatcct gctgctttca agtctgcacc tttttcttcg
    20941 ctacgaacta aagcataaat atcggacatt ggaacgagct ctttcaaata atttaatgcg
    21001 tagcctccaa gtccacctgt tgcacctgtt
//
LOCUS       DASDXX010000029        20974 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.029, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000029 DASDXX010000000
VERSION     DASDXX010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20974
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.029"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            150..1178
                     /locus_tag="U0280_000861"
     CDS             150..1178
                     /locus_tag="U0280_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde reductase"
                     /protein_id="HEM2270815.1"
                     /translation="MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIE
                     VLQNNGITDFTQLSFVELDLSKDEGWKEAMLDCKYVLSVASPVFFGKFKNEEELIRPA
                     IEGITRILQAAKEAKVKRVVMTSNFGAIGFSNADKNSITTEAYWTDELAKGLSAYEKS
                     KLIAEKEAWKFMENETELEFATINPVAIFGPSQSSHVSGSFDLLKNLLNGSMKRIINI
                     PLNVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVSKMPK
                     KTLPNAAIRAAAIFSKHAKEGELMINMNRQISNSKARDLLGWQPISTKEEAVLAAVDS
                     LAKYGLLD"
     gene            1267..2424
                     /locus_tag="U0280_000862"
     CDS             1267..2424
                     /locus_tag="U0280_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEM2270816.1"
                     /translation="MINTNQSSKESSAVYIHIPFCEHICYYCDFNKVFLEGQPVDEYV
                     DLLIKEMELTAAKGPIAPVDTVFVGGGTPTTLNEAQIARLCTAIHNILPLKKDIEFSF
                     EANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIG
                     FENVSIDLIFSLPGQTEADFQDTLKQALDLDLPHYSAYSLIIEPKTIFYNLMQKGKLF
                     LPGQDAEANMYDLLLNEMEKHGRKQYEISNFAKEGFQSKHNITYWSNEHYYGFGAGAH
                     GYVGNTRYSNFGPIKKYMEPLQKNILPTFQQKELTLKEKMEEEMFLGLRKVDGVDKKH
                     FKQKFGQDLDATFANAIQKTTAKGWLENNEENVALTRSGRFLGNNVFQEFL"
     gene            2571..3608
                     /gene="hrcA"
                     /locus_tag="U0280_000863"
     CDS             2571..3608
                     /gene="hrcA"
                     /locus_tag="U0280_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEM2270817.1"
                     /translation="MLTERQLLIFRAIIDHFTWTIQPVGSKNLLKEKGLPYSSATIRN
                     EMGVLEEYGFIEKTHSSSGRVPSEKGYRFYVDYLLQPKKLDKSDRQMIRSFFSENYYE
                     MEGLIQNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLILITDQGHVDN
                     HLVTIPEGTTLSDIERMVNILNERLVGLSLDDLKVQIPMEVKELLGKHVRNYESFMHV
                     FSDSFAQASQQKVYFGGKTNILNQPEFHDINKVREMLHLMEEEQDVYELFRDIPDGLQ
                     VKIGRENNNSLMEDCSIITATYNIAGERVGGIVLLGPTRMEYSRMMGLVDVMSRDLTD
                     VLTKLYRDNQN"
     gene            3650..4225
                     /gene="grpE"
                     /locus_tag="U0280_000864"
     CDS             3650..4225
                     /gene="grpE"
                     /locus_tag="U0280_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEM2270818.1"
                     /translation="MSEKKNKKERLADEIEQEELNILDETEETVEEEAAADTLTEEQA
                     KILELENKLDEVENRYLRMQADFENVKKRHIADRDASQKYRSQSLAQDLLPALDSFEK
                     ALATTSDQEEVKQILKGMEMVYNQILVAFEKEGIEVIPAVGEQFDPNFHQAVMQDSDE
                     NAGSNEITAELQKGYKLKDRVIRPSMVKVNQ"
     gene            4259..6100
                     /gene="dnaK"
                     /locus_tag="U0280_000865"
     CDS             4259..6100
                     /gene="dnaK"
                     /locus_tag="U0280_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEM2270819.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGGEAKIIPNPEGARTTPSVVGFKN
                     GERQVGEVAKRAAITNPNTISSIKRHMGTNYKETIEGKDYSPQEISAIILQYLKSYAE
                     DYLGETVDKAVITVPAYFNDAQRQATKDAGKIAGLEVERIINEPTAAALAYGMDKTET
                     DQTILVFDLGGGTFDVSILELGDGVFEVHSTAGDNELGGDDFDKKIIDYLVAEFKKDN
                     GIDLSQDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEVTLTRAKFD
                     ELTHDLVERTIAPTRQALKDANLSASDIDQVILVGGSTRIPAVQETIKKELGKEPHKG
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVMTTLIERNTTIPTSK
                     SQTFSTAADNQPAVDIHVLQGERPMAKDNKTLGRFQLADIPPAPRGIPQIEVSFDIDK
                     NGIVTVRAKDLGTGKEQNIVIKSSSGLTDEEIEKMVQDAEANAEEDKKNKENAELRNN
                     ADQLVFTVDKTLKELEGKVEEEEVKKAEAARDELQEALKGEDFEAIKEKTESLNEIVQ
                     NLSVKLYEQAAAEQQAAGGAEGQEAPQNDDVVDAEFEEVNDDDKENK"
     gene            6242..7372
                     /gene="dnaJ"
                     /locus_tag="U0280_000866"
     CDS             6242..7372
                     /gene="dnaJ"
                     /locus_tag="U0280_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEM2270820.1"
                     /translation="MAKRDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADE
                     KFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFG
                     GGGRQQDPNAPRQGSDLQYTMRLKFKEAIFGKDAEIEIPREENCDTCHGSGAKPGTTP
                     EKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCPTCHGKGRVTKTKKI
                     KVKVPAGVNDGQQMRVSGEGEAGINGGPNGDLYVVFVVIPDEFFEREADDIYVEVPIT
                     FVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHLRGNGTGDQHVIVKVI
                     VPKKLDDKQKEILREFASTTGDKVDEQTSGFFDKMKRAFKGD"
     gene            7444..8388
                     /gene="prmA"
                     /locus_tag="U0280_000867"
     CDS             7444..8388
                     /gene="prmA"
                     /locus_tag="U0280_000867"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEM2270821.1"
                     /translation="MEWSEVEVHTTNEAVEPVANVLTEFGAAGVSIEDVADFLRERED
                     KFGEIYALRREDYPEDGVIIKAYFLKTTEFVEQIPEIEQTLKNLSTFDIPLGNFQFVV
                     NDVDDEEWATAWKKYYHPVQITDRITIVPSWESYTPSANEIIIELDPGMAFGTGTHPT
                     TQLCIRALSDYLQPGDEVIDVGTGSGVLSIASAKLGAKSILATDLDEIATRAAEENIT
                     LNKTEHIITVKQNNLLQDINKTDVDIVVANILAEVILLFPEDVYRALKPGGIFIASGI
                     IEDKAKVVEEALKKAGLVIEKMEQQGDWVAIISKRGVE"
     gene            8389..9156
                     /locus_tag="U0280_000868"
     CDS             8389..9156
                     /locus_tag="U0280_000868"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEM2270822.1"
                     /translation="MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFP
                     SKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELG
                     AHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMF
                     DHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEV
                     NAKLAGLGPRILRTETAPLYCLSAASFYFDLYKNKKE"
     gene            9354..9527
                     /locus_tag="U0280_000869"
     CDS             9354..9527
                     /locus_tag="U0280_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEM2270823.1"
                     /translation="MSKTVVRKNESLEDALRRFKRTVSKSGTLQESRKREFYEKPSVK
                     RKKKSEAARKRKF"
     gene            9547..9993
                     /locus_tag="U0280_000870"
     CDS             9547..9993
                     /locus_tag="U0280_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEM2270824.1"
                     /translation="MTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKD
                     LTPDDEVTVISRELKQRRDSLAEFDKAGRNDLSDKVRSEIVIVEDYAPKQLTPEELEN
                     IVKATIEEVGASSKADFGKVMSAIMPKVKGKADGGAVNQFVKKYLS"
     gene            10181..11140
                     /locus_tag="U0280_000871"
     CDS             10181..11140
                     /locus_tag="U0280_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEM2270825.1"
                     /translation="MLNEFNEVVELSDDTNIQDLFGNNNKNIELLEELLQVKIITRGE
                     SLSITGEEEPVQHTTAVLNELILTVKRGIHIDGRDIAQAVKMQRNGTLIYFHTLFEEE
                     ITKNAKGMPIRPKTFGQRTYIQMIKKHDIVFGVGPAGTGKTYLAVVMAVDAWKKGNVS
                     KIILTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYDIFGTEHTTRLMDRGVIEIA
                     PLAYMRGRTLDHAFVILDEAQNTTIAQMKMFLTRLGYDSKMIVNGDMTQIDLPKGATS
                     GLVNAEQVLKDVKDIGFVYFEHHDVVRHPLVAEIIKAYEGKQN"
     gene            11156..13312
                     /gene="pgpH"
                     /locus_tag="U0280_000872"
     CDS             11156..13312
                     /gene="pgpH"
                     /locus_tag="U0280_000872"
                     /EC_number="3.1.4.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase PgpH"
                     /protein_id="HEM2270826.1"
                     /translation="MKLAKKWRDWYIESGKKYLFPLLLVCFAVVAYFLVCQMTKPESY
                     NVKLFQVAEKTIRSPQTVEDTEKTKEERTKASDAVEDVYVYNRETGQNRVALIQSLFA
                     YVNEVNAEAQEKDTKNKEKAKKENKPAPAPTSTEDKLKNLKDKLSSNVSEKITSNISD
                     EVFTTLIEAKSKDFNVMEDVVTTEVEKSMENKIRDENLNSVKIRARDDIELSAIPAYY
                     KNVSKALVSYAIVPNEVYDEEQTDARRKEAAQSVVPVKILQGQVIVQEGQIVDRETYR
                     QLKMLHLLDQKMPVKQYAGFAIFIIALAAILFLYTKKQTQPKAKKMQTMLIFSSVYLV
                     SLFMLLIILFLETQNIANIAFLFPAAFAPMILKILLNEKYAFLSVIFIAVTSLLTFQN
                     DATSGITIFILLSGATSVVVLRDYSRRSAIMLSGFMVGLINMVYVLLLLLINNSTLLQ
                     VSTLMAIGYAFLGGFGAFILGVGVIPLFETIFGLLTTSRLVELANPNHPLLKKILMKA
                     PGTYHHSMMVANLAEACADKIGANSLLVRVGCFYHDIGKTLRPPYFVENQLQGINPHD
                     RLTPEQSRDIILSHTKDGAEILKENHMPQPIIDIALQHHGTTLLKYFYFKAKETNPDV
                     KEADYRYSGPKPQTKEIAIINISDSVEAAVRSSTEPTMAKITEIIDGIIKDRFLDGQF
                     TECDITIQEIKIIRDTLIATLNGIYHQRIQYPDDKD"
     gene            13329..13814
                     /gene="ybeY"
                     /locus_tag="U0280_000873"
     CDS             13329..13814
                     /gene="ybeY"
                     /locus_tag="U0280_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEM2270827.1"
                     /translation="MTVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSL
                     TFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIIS
                     TEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE
                     R"
     gene            13792..14187
                     /locus_tag="U0280_000874"
     CDS             13792..14187
                     /locus_tag="U0280_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEM2270828.1"
                     /translation="MLMDLKDRKYKRSKNYAESFHHAFTGLKTAFLEERNMRFHTFAA
                     LAVVICGFFFHVTKSEWILLILSIFGVLTLEMVNTAIERAVDVATEQYIDEAKKAKDV
                     AAGAVLLAAIVASFIGLIIFIPYFCQMFL"
     gene            14212..14607
                     /locus_tag="U0280_000875"
     CDS             14212..14607
                     /locus_tag="U0280_000875"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM2270829.1"
                     /translation="MKENNFISLAKQAREFAYVPYSKFPVGAALVTKDDEVVLGCNIE
                     NASFGLTNCAERTAIFKAVSEGKRDFKQLVVVADTDGPVSPCGACRQVISEFCAPDMP
                     VILTNLTGKTATVTVKELLPGAFTSEDML"
     gene            14604..15509
                     /gene="era"
                     /locus_tag="U0280_000876"
     CDS             14604..15509
                     /gene="era"
                     /locus_tag="U0280_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEM2270830.1"
                     /translation="MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRN
                     KVQGVYTTDESQIIFIDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGR
                     GDEFIIEKLKNVQTPVFLLINKIDLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNV
                     PNLLEQTNANLEIGPMYYPKDQITDHPERFIISELIREQVLQLTREEVPHSVAVVIEG
                     IEKNPKTEKLTINATIIVERSTQKGIIIGKQGQMLKQIGMRARKEIERLLGSKVFLEI
                     WVKVQKNWRDKEHYLQDYGFDREEY"
     gene            complement(15556..16185)
                     /locus_tag="U0280_000877"
     CDS             complement(15556..16185)
                     /locus_tag="U0280_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HEM2270831.1"
                     /translation="MGMLLILLVSLFILTFIGVVVGIILLIVRKEKWAGIIVAGLSVG
                     IGFLVLAAGLNITTIKLFEGFNNPLSIHNYNSSNEPFTNDYAEDYDEDYYDDYIDVSY
                     GESVEIENNSTVTIYKPELTQMKEGYDIYKVKVKYANTSSDPISFYSEDIALYDNADD
                     DYGQQITEEGFAGEIQPGETKELTLYYEVYNLGPYDVEYDNYSWTTNKE"
     gene            16322..17089
                     /gene="recO"
                     /locus_tag="U0280_000878"
     CDS             16322..17089
                     /gene="recO"
                     /locus_tag="U0280_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEM2270832.1"
                     /translation="MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSR
                     LAAVTQLFTNGYFTFFGSNGLGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATE
                     ERQPNPYLYELTFQILRDINEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGH
                     FDFSTSSNGIICHRCFEKDRYRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQ
                     KAIDTYYDEYSGLYLKSRKFLREMDKWENMLKKDSDD"
     misc_binding    17130..17303
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            17371..18261
                     /gene="glyQ"
                     /locus_tag="U0280_000879"
     CDS             17371..18261
                     /gene="glyQ"
                     /locus_tag="U0280_000879"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEM2270833.1"
                     /translation="MNLQTMIRTLQDYWSEQGCIMLQSYDVEKGAGTMSPYTFLKAIG
                     PEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGIN
                     PLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYG
                     VERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYER
                     EATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFY
                     ESREKLGFPLVKEEGGKRHE"
     gene            18254..20320
                     /locus_tag="U0280_000880"
     CDS             18254..20320
                     /locus_tag="U0280_000880"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEM2270834.1"
                     /translation="MSKDFLLEIGLEEMPAKYVTSSVLQLEKRVTDWLKDNQIEFKEI
                     KTYSTPRRLTVLVEEMAEEQANRVEEAKGPAKKIALDDEGNWSKAALGFAKSQKVAPE
                     DLTFREIKGVEYIYIKKEVIGEKTTALLPSLEKVVTSMTFPVSMHWGSNDLRYIRPIK
                     WLIAMFGEEIIPFEITGVSTSNTSRGHRFLGKTATINQPSDYPNALLEQFVVVNASER
                     KQAIVEQLRELETMENWQIREDDDLLEEVTNLVEYPTVLAGNFEKEYLELPEEVLITT
                     MKEHQRYFPVFSQEGELLPHFVTVRNGNHENLDTVARGNEKVLRARLSDADFFYQEDL
                     KITIDEAVAKLQNIVFHEKLGTLTEKMKRVQKVALMLADYLNWQEEDKQDIIRLTNIY
                     KFDLVTNIVGEFPELQGLMGEKYALLQGEKPAIATAIREHYLPSSAEGDLPQTDLGSL
                     IAIADKLETLIGFFCVNIAPTGSADPFGLRRSAFGAVRIIQANGWDIPMLEVVSRIVD
                     MERAEGATELPSSDVIKEVQTFLKNRLRVILQGHHIRHDIIDAVIGGDPNMIPQLIDR
                     AQILNKHADAEWFRPTIEALTRVVNISKKYEDGVEVDPSLFENEYEQALFDKLEKLKF
                     DFAGLKIVDRLKAFADLRTTIDAYFDNTLVMTDNDELKNNRLALLFELASFIKEFAQM
                     DEINVK"
     gene            20355..>20974
                     /locus_tag="U0280_000881"
     CDS             20355..>20974
                     /locus_tag="U0280_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HEM2270835.1"
                     /translation="MTQPAVYVVSDSTGETAELVTRAALSQFGQTPKFIHRFHHVDSS
                     HMIEEIVDLVAVNNGIIVHTIVLESVREELNKTAQAFGVPIIDLFGPLLNQLEETYKI
                     KPLSEPGRVRSMDEAYFNKVAAIEFAVENDDGRNPRGILQADYVLIGISRTSKTPLSQ
                     YLALKGLKIVNIPIVPEAQIPDELFEIDPKKIIGLKISKQKLTKIR"
BASE COUNT         7363 a         3605 c         4215 g         5791 t
ORIGIN      
        1 taaatatttt ggacacttct ttaatagaat aagtcatttc ttcctccaat aaataattta
       61 cttgccctac actatactct agggtttaaa gtaagtataa agttaataaa gaaaataagc
      121 aaaattaact actattggag gaattcacga tgaaaaataa cgtattagta acaggcggaa
      181 ctggattttt aggaatgcat attatctttc aattattgca acaaggctat caagtcaaaa
      241 caaccgtacg ctctttaaaa agcaaagaaa aagtaataga agtactgcaa aataatggaa
      301 taacggattt tacgcaatta tcctttgtcg aacttgattt atccaaagat gaaggatgga
      361 aagaagcaat gctcgattgt aaatatgtgc taagtgtcgc atctccagta tttttcggta
      421 aatttaaaaa tgaagaagaa ttaatacgcc cagcaataga aggtattaca agaattttac
      481 aggccgcaaa agaggcaaaa gtaaaacgag tagttatgac ttcgaatttt ggcgctattg
      541 gttttagcaa cgcagataaa aatagcatta caacagaagc atattggacc gatgaactcg
      601 ctaagggttt gtcagcatat gaaaaatcta aactaattgc agaaaaagaa gcttggaaat
      661 tcatggaaaa tgaaacagaa ttggaatttg ctaccatcaa tccggttgcc atttttggtc
      721 catcacaaag cagtcatgtc tccggaagct ttgacttatt aaaaaatctg ttaaatggtt
      781 ctatgaaacg tatcataaat attccgttaa acgtagtaga tgcacgagat gttgccgatt
      841 tacatattcg cgcaatgatt actcctgaag caaacggaga acgttttatt gcttcagctg
      901 acggagaaat tagtatggca gatatcgcac atttgcttca acgagagcgt cctgaactag
      961 tgagtaaaat gccgaaaaaa acattgccaa atgccgctat aagagcagct gctatattta
     1021 gtaaacacgc caaagaaggc gagttgatga ttaatatgaa tcggcaaata agcaattcaa
     1081 aagcgagaga tcttttagga tggcagccga tttcgacaaa agaagaagcc gttcttgctg
     1141 cagtggatag tttggcaaag tatggtttat tagattaaaa gcgaatcctg caccaaagca
     1201 ctggaaaata tgttaaactg actaatggac aacgaagcaa attttaagtg caaggaattg
     1261 ataaaaatga taaatacgaa ccaatcgagt aaggaaagtt ccgcggtata tatccatatt
     1321 ccgttttgcg aacatatttg ctattactgc gattttaata aagtattctt agaaggacaa
     1381 ccggtcgacg aatacgtaga tttactaatt aaagaaatgg aattaactgc tgcaaaagga
     1441 cctattgcgc cagtcgacac tgtatttgtt ggtgggggaa cgcctacaac cctgaacgaa
     1501 gcgcaaattg cgagactttg cacagccatc cataacattc tacctctaaa aaaagatatc
     1561 gaattttcct ttgaagccaa cccaggagat ctttcgctat ctaaattaca agccatgcaa
     1621 gatcatggcg ttaatcgtat cagtatggga gttcaaagct tcaacaatga acttctcaaa
     1681 aaaattgggc gcattcatac tgtaaaagat gtttatcaat ctgtggaaaa tatgcgcaaa
     1741 atcggatttg aaaatgtaag cattgattta atctttagct tgcctggtca aacagaagca
     1801 gatttccaag atacattaaa acaagcgctt gaccttgatt taccgcatta ctccgcctat
     1861 tcattaatca tcgaaccaaa aacgattttt tataacctta tgcaaaaagg aaagcttttc
     1921 ttacctggtc aagatgccga ggcaaatatg tacgatttac ttctcaacga aatggaaaag
     1981 cacggtcgta aacaatatga aattagtaat tttgccaaag aaggatttca gagtaaacac
     2041 aatatcactt attggagcaa tgaacattac tacggatttg gcgccggagc acatggctat
     2101 gttggcaata cacgttatag taatttcgga ccaatcaaaa aatacatgga accactccaa
     2161 aaaaatatac tcccaacatt ccaacaaaaa gagcttacat taaaagaaaa aatggaagaa
     2221 gaaatgtttt tagggcttag aaaagtggac ggcgtagata aaaaacattt caaacaaaaa
     2281 ttcggccaag atttagatgc aacatttgcg aatgctattc aaaaaacaac cgcaaaaggc
     2341 tggctcgaaa ataacgaaga aaatgtggca cttacaagaa gtggaagatt tttaggaaat
     2401 aatgtttttc aagaatttct ctaaaaccgc actatttgac cttttttgac caaacaatcc
     2461 aactttagtc tgaaatcgag tgttttcggt tgactaaggt ggaattgttt ggtaaattta
     2521 tacttgtatt tagcacttga cgttatggag tgctaaaaga ggtgattgct atgttaacag
     2581 aaagacaact tttgattttt cgtgccatca tcgatcattt cacttggact attcagccag
     2641 ttggatcaaa gaatttgctg aaagaaaaag gtttgcctta tagttccgcg actatccgta
     2701 atgaaatggg cgttctcgaa gaatacggtt ttattgaaaa gacgcattcc tcatcgggac
     2761 gagttccatc agagaaagga tatcgcttct atgtcgatta tttactccag cccaaaaagc
     2821 tagataaatc cgacaggcaa atgattcgtt ccttcttttc agagaactac tacgaaatgg
     2881 aaggacttat ccaaaattca gcattaatgt tatccgattt aaccaattac acgtccattt
     2941 tgcttggtcc tgaagcgacg aaaaatcatt taagtggctt tagatttgta ccaataaata
     3001 attttcaagc aatgctcata ttaattaccg atcaagggca tgttgataac catttggtga
     3061 caataccaga aggcacaacg ctctccgata ttgaacgtat ggtcaacatt ctaaatgaac
     3121 ggttagtagg actttcgctt gatgatttaa aagtacaaat acccatggaa gtaaaggaat
     3181 tacttgggaa gcatgttaga aattacgaaa gctttatgca tgtgttttcc gattcttttg
     3241 ctcaagcaag tcaacaaaaa gtgtattttg gcggaaaaac gaatatttta aatcaaccgg
     3301 aatttcatga cattaataaa gtccgtgaga tgcttcattt gatggaagaa gaacaagatg
     3361 tgtatgaatt gtttagggat attcccgatg gtcttcaagt gaaaattggc cgagaaaaca
     3421 ataatagtct aatggaagat tgtagtatca ttacagcaac atataatatt gctggcgaac
     3481 gcgttggcgg tattgtactc ctaggaccca caagaatgga atatagcaga atgatgggac
     3541 tcgttgatgt gatgagccga gatttaaccg atgtgttaac caaactttat cgtgataacc
     3601 aaaattagga aggctgaaaa agcacacgtt ttttcaggag gtggctaaag tgtctgagaa
     3661 aaagaacaaa aaagaaagac tagctgatga aatcgaacaa gaagaattaa acattctaga
     3721 tgaaacagaa gaaactgttg aagaagaggc tgcggctgac actttaacag aagaacaagc
     3781 aaaaatttta gagcttgaaa acaaacttga tgaagtagaa aatcgctacc ttcgcatgca
     3841 agcggacttc gaaaatgtga agaaaagaca tatcgcagac cgtgatgcca gtcagaaata
     3901 tcgttcgcag agcctagcgc aagatttact tcccgcacta gacagttttg aaaaagcact
     3961 tgcaacgact tctgatcagg aagaagtgaa acaaatttta aaaggaatgg aaatggtata
     4021 caaccaaatc cttgttgctt ttgaaaaaga aggtattgaa gtcattccag ctgtcggcga
     4081 acaatttgac ccgaacttcc atcaagccgt aatgcaagat agtgatgaaa atgcaggaag
     4141 caatgaaatc actgcggaac ttcaaaaagg ttataaactt aaagaccggg ttatacgccc
     4201 atctatggta aaagtaaatc aataaaaaat aattactgaa taacaggagg aaataacaat
     4261 gagcaaaatt atcggaattg acttaggaac aacaaactct gcagtagcag tattagaagg
     4321 cggagaagca aaaatcatcc ctaacccaga aggcgcacgt acaacacctt ctgtcgttgg
     4381 tttcaaaaat ggcgaacgcc aagttggtga agtagcgaaa cgtgctgcta ttacaaaccc
     4441 aaatacaatt agttctatta aacgtcacat gggtactaac tataaagaaa caatcgaagg
     4501 aaaagattac tcaccacaag aaatcagtgc aatcatttta caatatctaa aaagctacgc
     4561 agaagactat cttggtgaaa ctgtagataa agctgttatt acagttccag cttacttcaa
     4621 cgatgcgcaa cgtcaagcaa caaaagatgc tggtaaaatc gctggtcttg aagtggaacg
     4681 tattattaac gaaccaacag cagcagctct tgcttacggt atggataaaa cagaaacaga
     4741 ccaaacaatc ctagtatttg accttggtgg tggtacattt gacgtatcta tccttgaatt
     4801 aggtgacggc gtattcgaag tacattctac tgccggcgac aacgaattag gtggagatga
     4861 cttcgataaa aaaatcatcg actatttagt agcagaattc aaaaaagata atggtattga
     4921 cttaagccaa gataaaatgg cgcttcaacg tttgaaagat gctgctgaaa aagcgaaaaa
     4981 agatctttct ggcgtaacaa gcacacaaat ctccttacca tttatcacag ctggagaagc
     5041 tggtccactt cacttagaag taacccttac tcgtgctaaa tttgatgaat taacacatga
     5101 cttagttgaa cgtactattg cgccaactcg tcaagcatta aaagatgcaa acttgtctgc
     5161 aagcgatatt gaccaagtaa ttctagttgg tggatctact cgtattcctg cagttcaaga
     5221 aacaatcaaa aaagaattag gcaaagaacc tcataaaggt gtaaacccag atgaagttgt
     5281 agcaatgggt gctgcaattc aaggtggcgt aatcactggt gatgtaaaag acgttgtact
     5341 acttgacgta actccattat cccttggtat tgaaacaatg ggtggcgtta tgactacact
     5401 tatcgaacgt aatacaacta tcccaacatc taaatcacaa actttctcta cagcagctga
     5461 caaccaacca gccgtagata tccatgtact tcaaggtgaa cgtccaatgg caaaagacaa
     5521 caaaacatta ggtcgtttcc aattagcgga tattccacca gctccacgcg gaattccaca
     5581 aatcgaagta tcttttgata tcgacaaaaa tggtatcgta acagttcgtg caaaagatct
     5641 tggaactggt aaagaacaaa acatcgttat caaatcttct tcaggtttaa cagacgaaga
     5701 aattgagaaa atggttcaag atgctgaagc taacgctgaa gaagataaaa agaacaaaga
     5761 aaacgctgaa cttcgcaaca atgcagacca attagtattc actgtagata aaactttgaa
     5821 agagttagaa ggcaaagtgg aagaagaaga agtgaaaaaa gcagaagcag ctcgcgatga
     5881 actacaagaa gcgcttaaag gtgaagattt tgaagctatc aaagaaaaaa cagaaagctt
     5941 aaacgaaatc gttcaaaacc tatctgttaa attatacgaa caagctgcag cagaacaaca
     6001 agcagctggc ggtgcagaag gtcaagaggc tcctcaaaat gacgacgtag tagacgctga
     6061 atttgaagaa gtaaatgacg acgacaaaga aaacaaataa tcttttttaa agtaaagata
     6121 atgagtcaaa gtctactgtg gctttgactt tttatctgaa ataaagtttt tacaacatct
     6181 ctttcaaatg ttacaatacg ttaggactat aaaaatctat catggacagg agtgatggcg
     6241 gatggcaaaa cgagattact atgaagtgct tggtgtttcc aaaagcgcct cagcggacga
     6301 aataaaaaaa gcttaccgga aactgtccaa acagtatcat ccggacataa ataaagaagc
     6361 aggcgctgat gaaaaattta aagaaatatc agaggcatat gaagcattaa gtgacccaca
     6421 aaaacgtgcg caatatgatc aatatggaca cgtagatcca aaccaaggct tcggcggcgg
     6481 tgctggtggc ggatttagcg gtggaggatt ctctggattt gaagatatct ttgacacatt
     6541 ctttggtggc ggtggacgtc aacaagatcc aaatgcccca agacaaggta gcgatttaca
     6601 atatactatg cgtcttaaat tcaaagaagc tatttttggt aaagatgcag aaatcgaaat
     6661 tcctcgcgag gaaaactgtg acacatgtca tggttccggt gcaaaaccag ggacaacacc
     6721 tgaaaaatgt agccattgtg gtggtaaagg ttccattaac gtggaacaaa ataccccatt
     6781 tggtcgtgta gttaacaagc ggacatgtca atactgtaat ggtactggta aagaaatcaa
     6841 agaaaaatgc ccaacttgtc acggtaaagg ccgtgtaact aaaacgaaaa aaatcaaagt
     6901 gaaagttcca gctggcgtga acgacgggca acaaatgcgc gtatctggtg aaggagaagc
     6961 cggcattaac ggcggaccta acggcgattt atatgtggta tttgtcgtaa ttccagatga
     7021 gtttttcgaa cgcgaagcag atgatattta cgtagaagtc ccaatcacat tcgtacaagc
     7081 tacattaggt gacgaaattg atgttccaac tgttcacggc aaagttcgtt tgaaaattcc
     7141 aagtggtact caaacaggaa caactttccg cttacgtggt aaaggtgtgc cacatcttcg
     7201 aggaaatgga actggcgatc aacatgtaat cgtcaaagtc attgttccga aaaaactaga
     7261 tgataaacaa aaagaaatct tgcgagaatt tgcttccact actggagaca aagtagacga
     7321 acaaacatcc ggattttttg acaaaatgaa acgagctttt aaaggcgatt gatgaacgta
     7381 gaggtcgata gttgtgcgag aagcaaccat cgaccttttc tacatacaaa aggagtgtta
     7441 aaaatggaat ggtcagaagt agaagtccat acaacaaacg aagctgtaga accagtagct
     7501 aatgttttga cagaatttgg tgcagcagga gtatccattg aagatgttgc tgatttttta
     7561 cgtgaacgag aagacaaatt tggagaaata tatgcactaa gacgagaaga ttatccagaa
     7621 gacggcgtta ttattaaagc ttacttctta aagacaacag aatttgtaga gcaaattcca
     7681 gaaattgaac aaacattgaa gaatctgtct acttttgata ttccgctagg taatttccaa
     7741 tttgtcgtta atgatgtgga cgacgaggag tgggctaccg catggaagaa gtattatcat
     7801 ccagttcaaa tcactgacag gatcacgatt gtaccaagtt gggaatcata caccccatct
     7861 gctaacgaaa taatcattga gctagatcca ggaatggctt ttgggacagg aacacatccg
     7921 acaactcagc tatgtatccg cgcactgagc gattatttac aaccaggaga tgaagtgatt
     7981 gatgttggga ctggttctgg cgtcttaagt attgccagtg ctaaattagg tgcaaaatct
     8041 attttagcaa cagacctcga cgaaatcgcc actcgtgcag cagaagaaaa tattacttta
     8101 aataaaactg aacacattat tactgtcaaa caaaataatc tacttcaaga tattaataaa
     8161 acagacgtgg atattgttgt tgcgaacatt ttagcagaag ttattttgct tttccctgag
     8221 gatgtttata gagcactcaa accaggcgga attttcattg cttccgggat tattgaagac
     8281 aaagcgaaag tagtcgaaga agcacttaaa aaggctgggc ttgttattga aaaaatggag
     8341 caacaagggg actgggttgc gattatttcc aaacgaggag tggaataaat gcaacgttat
     8401 tttgtaacaa atgagctaga gaatgataac gaaacactat ccattactgg agaaaacttc
     8461 catcatatta ctcgtgttat gcgaatgaaa gaatccgacc aagttttcat tgtttttcct
     8521 agcaaaaaaa catgtattgc cgctattaca gctataaacg atgatgaagt atttttaaat
     8581 ttagtgaaat ggctagaaga agataccgaa ttgcctatag aaatcaccat cgcaagtggt
     8641 ctaccaaaag gcgacaaact agaactcatc attcaaaaaa gtacagaact aggcgcacac
     8701 aaatttatcc cttataaagc agaacgatct gtggtgaaat gggatgacaa gaaagtcatc
     8761 aaaaaaatcg agcgacttca aaaaattgcg caagaagctg ctgaacaatc gcaccggaca
     8821 atcattccag aagttcatta tgctgctagt ttcaaagagt taatgtttga ccatgttcac
     8881 tatgactttg ttatcgcagc atatgaagag agcgccagag aaggtgagga cagcgcgctt
     8941 gctaacttat tccaaaccat gaagcctgga cagtctgttt tatgtgtttt tgggcctgaa
     9001 ggaggcatta gcgaaaaaga gctaatgcaa cttcaagaag taaatgcaaa actcgcagga
     9061 ctcggcccga gaatattaag aacagaaacc gcaccactct attgtttatc cgctgcttct
     9121 ttctattttg atctttataa aaacaaaaaa gaataacatt tcaaagtttt atgcgaaagt
     9181 taacgatttc atgttgacga tgcccgatgt ttcgtatata atttttaatg agtgaatgct
     9241 tatctgcatt acttcagaat aattcataat ttattttccg ttatgtccta ttctggaact
     9301 taaatgaagg atttaagtga gtgcatgtaa gtgccggagg gagggaaaga gagatgtcaa
     9361 aaacagtagt tcgtaaaaac gaatcgcttg aagatgctct tcgtcgcttt aaacgtactg
     9421 tttccaaaag tggaactttg caagaatcca gaaagcgcga attttatgaa aaaccaagcg
     9481 taaaacgtaa gaaaaaatcc gaagcagcaa gaaaacgcaa attctaatta aaaggcgatg
     9541 atttcgttga cactgcttga caagttaaat gaagatatga aacaagcgat gcgcgataaa
     9601 gagaaagaaa aactttccgt tattcgtatg ttaaaagcag ctttacaaaa cgaagcaatt
     9661 caccaaggtg tgaaagatct tactccggat gatgaagtaa ccgtgatttc ccgcgaactc
     9721 aaacaacgca gagattctct agcagagttt gacaaagctg gacgtaacga cctttctgat
     9781 aaagtccgtt ccgagattgt cattgttgag gactacgcgc caaaacaatt gactcctgaa
     9841 gagcttgaga atattgtgaa agcaactatc gaagaagttg gcgcatctag taaagctgat
     9901 ttcggcaaag taatgtccgc gattatgcct aaagtaaaag gtaaagctga cggtggtgct
     9961 gttaaccaat tcgtaaaaaa atatctttca taaactaatt caaactagtt ttgaaacatt
    10021 aagaaacagg attacttcct attttgtgga ggaaatcctg tttttttatg ccgattttta
    10081 cttgaattgc gttgttgcta tcgcttcgtt tttcaagcaa ggcaatttcg tgtataatat
    10141 aactaatcaa ggcacttata acaggtgaag gggttagcca atgctaaatg aatttaatga
    10201 agtagtcgaa ttatctgatg acacaaatat tcaagattta ttcggcaata ataataagaa
    10261 tatcgaactt ttagaagagt tacttcaagt gaaaatcatt actcggggag agtcactatc
    10321 tattacaggc gaggaagagc ctgtacagca tacgactgcc gttttaaatg aacttatttt
    10381 gacggtaaaa cgaggtattc atattgatgg tcgagatatc gctcaagcgg taaaaatgca
    10441 aagaaacgga acacttattt actttcatac cttatttgaa gaagaaatta cgaagaatgc
    10501 aaaaggaatg ccaattaggc caaaaacatt cggacaaaga acttatattc aaatgattaa
    10561 aaaacatgac atcgttttcg gcgttggtcc agcaggtact ggtaaaacct atctagcagt
    10621 agttatggca gtagatgcat ggaaaaaagg aaatgtgagc aaaatcattt taacaagacc
    10681 tgccgttgaa gctggcgaaa gtttaggttt tttgcctgga gatctaaaag aaaaagtaga
    10741 tccttatcta cgccctgtgt acgacgcgtt atatgacatt tttggtacag agcatacaac
    10801 aaggttaatg gaccgaggcg tcattgaaat agctcctctg gcttatatgc gtggccgtac
    10861 acttgatcat gcctttgtca ttttagacga ggcgcagaat acgaccattg cccaaatgaa
    10921 aatgttttta acacgacttg gttatgactc caaaatgatt gtcaatggag atatgacaca
    10981 aattgactta ccaaaaggtg caactagcgg tcttgtcaat gcagaacaag ttttaaaaga
    11041 tgtaaaagat atcggttttg tttactttga acatcatgat gtagtcagac acccactcgt
    11101 tgctgaaatt attaaagctt atgaagggaa acaaaattag agaggagaca aagatgtgaa
    11161 actagccaag aaatggagag attggtacat cgaaagtgga aagaaatacc tttttccgct
    11221 gctccttgtt tgctttgcag ttgtagctta ttttctcgtt tgccaaatga cgaaaccgga
    11281 atcttacaat gttaaactat tccaggtggc tgaaaaaaca attcgttcac ctcaaacggt
    11341 ggaagataca gaaaaaacaa aagaagaaag aaccaaagca agcgatgctg tagaagatgt
    11401 gtatgtctac aatcgcgaaa ctggtcaaaa ccgagtagca cttatccaaa gtttatttgc
    11461 ctatgtaaat gaagtaaacg cagaagcgca agaaaaagat accaagaata aagagaaagc
    11521 aaaaaaagag aataagcctg ctcctgcgcc aacatcaact gaagataaat taaaaaactt
    11581 aaaagacaaa ttatctagta acgtatctga aaaaataact tctaacatat ctgacgaagt
    11641 tttcactact ttaatcgaag cgaaaagtaa agattttaat gtcatggaag acgtggttac
    11701 aacagaagtt gaaaaatcca tggaaaataa aatccgagat gaaaacttga attctgtaaa
    11761 aattagagct cgtgatgata ttgaactttc agcgataccc gcttactaca aaaatgtctc
    11821 aaaagcctta gtttcctatg ctatcgtacc gaatgaagtt tacgatgaag agcagaccga
    11881 tgcacgacgt aaagaagctg cgcaatccgt tgttcctgtg aaaatcttac aagggcaagt
    11941 tattgttcaa gaaggccaaa ttgtagatag agaaacatat cgtcagctaa aaatgctaca
    12001 tttacttgat caaaaaatgc ctgtaaaaca atacgctgga tttgcgattt tcattattgc
    12061 tttagcagca attctattcc tttacacgaa aaaacaaaca caacctaaag cgaaaaaaat
    12121 gcagacgatg cttatttttt cttcggttta tcttgtttct ttgtttatgt tattaattat
    12181 tttattttta gaaacgcaaa atatcgcgaa tattgctttc ttattcccag ccgcctttgc
    12241 cccgatgata ctcaaaattt tactcaatga gaaatatgcc tttttaagcg tcatttttat
    12301 tgctgtaact agtttgttaa catttcaaaa tgatgctaca agcggcataa ctatttttat
    12361 tttattgagt ggcgcgacga gtgttgttgt gttacgcgat tatagtagac gttcggctat
    12421 tatgttgtct gggtttatgg ttggtttaat taatatggtt tatgtgttac ttttattatt
    12481 aataaataac agcacactgt tgcaagtttc tacactaatg gccattggat atgccttttt
    12541 aggtggattt ggcgcattta ttctcggagt aggagttatt ccgttattcg aaacgatttt
    12601 tggattgtta acaacgagtc gtttggtcga attagctaat ccaaaccatc cattattgaa
    12661 gaaaatatta atgaaagctc ctggtacgta tcatcatagt atgatggtag ctaacttagc
    12721 agaagcatgc gctgacaaaa ttggtgccaa tagtttactt gttcgtgttg gctgttttta
    12781 tcatgatata ggaaaaacat taagaccacc ttattttgtg gaaaatcaat tgcaaggaat
    12841 aaatccgcac gatagactga caccagaaca aagtcgtgat ataattcttt cgcatacaaa
    12901 agacggagca gagattttaa aagaaaatca tatgccacaa ccaattattg atatcgcact
    12961 ccaacatcac gggacgacac tgcttaaata tttctatttt aaagcgaaag aaacaaatcc
    13021 agatgtgaaa gaggcagatt atcgttacag tggtccaaag ccacaaacga aagaaatcgc
    13081 cattatcaat atatcggata gtgttgaagc ggcagttcgt tcttccacag agccaaccat
    13141 ggcaaaaata acagaaatta ttgacggaat cattaaagat cgtttccttg atgggcaatt
    13201 tacagaatgt gatattacaa tacaagaaat taaaatcatt cgtgacacct taatcgccac
    13261 attaaatgga atatatcatc aacgaattca atatcctgat gacaaagatt gaaataggag
    13321 gacaaaagat gacggtctta gaaattgatt tactagacga aactaagaat ttacttgatg
    13381 aagataaaca gctagttgaa aatattttac aatttgcggc tgagtattta aaaatcgaac
    13441 aagggacaga gctgtcactc acctttacaa cgaatgaagg tattcgtgag attaaccgag
    13501 aatatcggga taaagatcaa gcaaccgatg ttatttcgtt cgcgctagaa gaaatgggcg
    13561 acggggaaac ggagattgat tggggcgaat ttgatcttga aacgcctcgt atgcttggcg
    13621 atataattat ttcgactgaa aaagcagaag agcaagccaa agattacgga catacaaaag
    13681 caagagaatt aggtttctta gcagttcatg gattgctgca cttgcttggg tatgatcata
    13741 tggagcctga cgaagagaaa atcatgtttg gcttacaaaa agaagtgttg gatgcttatg
    13801 gacttgaaag atagaaaata caaacgtagt aaaaattatg cagaatcttt tcatcatgct
    13861 tttactggac taaaaactgc ttttttagaa gaacgtaata tgagatttca tactttcgca
    13921 gcgcttgctg ttgtcatctg tggctttttc tttcatgtaa ctaaatctga gtggatttta
    13981 ttaatccttt ctatttttgg tgtgttaacg ctagagatgg tgaacacagc gattgaacga
    14041 gcggtagatg tggcgacaga acaatacatt gatgaggcga aaaaagcgaa ggatgtagct
    14101 gccggagcgg tactgttagc agcaattgta gcaagtttta ttggactgat tatattcata
    14161 ccatactttt gccagatgtt tttataaaaa gaagggattg tgacttggta aatgaaagaa
    14221 aataatttta tctcactcgc taaacaagca agagaatttg cgtatgttcc ttactcgaaa
    14281 tttccagtag gagcagctct tgttacgaaa gatgacgagg ttgtacttgg ctgtaatatc
    14341 gagaatgcat cattcggttt aacaaactgc gcagaacgga cagctatttt taaagctgta
    14401 tcagaaggaa aacgagattt taaacagtta gttgtcgtag cggatacaga cggtccagtt
    14461 tcgccgtgtg gggcatgcag acaagtcatc agtgaatttt gtgcgccaga tatgccagta
    14521 atattaacaa acttaacagg gaaaacagcg acggtaacgg tgaaagaact tttaccaggc
    14581 gcattcacat cggaggatat gttatgagtg aaccatttaa atcaggattt gtagctatag
    14641 ttgggcggcc taacgttggg aaatcaactt tattaaatca catcattggc caaaaaattg
    14701 ccattatgag tgataaagct caaacaacaa gaaataaagt acaaggtgtt tatacaacag
    14761 atgaatcaca aattattttt attgatacac caggtataca taaaccaaag cataaattag
    14821 gcgatttcat ggtgaagatt gcgctaaata cgttccaaga agtagactta atttatttcg
    14881 taatcgacgc atctaccgga tttggacgcg gagatgaatt tattattgaa aaacttaaaa
    14941 acgtacaaac acctgttttt cttttgatta ataagattga tttaattgct ccagaagatt
    15001 tattcaagtt aattgaacag taccgcgatt tgatggactt tgatgagatt attcctattt
    15061 cagcacttca aggaaataac gtgcctaact tactagaaca aacgaatgct aacttagaaa
    15121 tcggaccaat gtattatcca aaagatcaaa tcacggacca tcctgagcgt ttcatcatct
    15181 cggagttaat tcgtgaacag gttttacaat taacacgaga agaagttcca cattctgtag
    15241 cagtggttat tgaaggaatt gaaaaaaacc ctaaaacaga aaaacttaca atcaatgcta
    15301 caattattgt agaaagaagc acgcaaaaag gaattattat tggtaaacaa ggtcaaatgc
    15361 taaaacaaat tggtatgcgt gctagaaaag aaattgaacg cttactcggc tccaaagtct
    15421 tcttagaaat ttgggtaaaa gttcaaaaaa actggcgcga taaagagcat tatttgcaag
    15481 attacggttt cgaccgcgaa gagtattaaa aaagcatctg gcgcacaatt gggtttgtgc
    15541 gccagatgct tttaattatt ctttatttgt agtccagcta tagttatcat attctacatc
    15601 atatggtcca aggttataca cttcatagta aagcgttaat tcttttgtct cccctggttg
    15661 aatttctcca gcaaaacctt cttccgtaat ttgttggcca taatcatcgt ctgcattatc
    15721 ataaagcgca atgtcttcgg aatagaagct tattggatca gaacttgtat ttgcgtattt
    15781 cacttttact ttataaatat catagccttc cttcatttgg gtcagctcag gtttataaat
    15841 ggtaactgtg ctattgtttt ctatctcaac agattctccg taacttacgt ctatgtagtc
    15901 gtcatagtaa tcttcatcat agtcttctgc ataatcattt gtaaatggtt cattgctcga
    15961 attgtaatta tgaatagaaa gtggattatt aaatccttca aataatttaa tcgttgttat
    16021 attaagtcca gctgctaata ctaaaaagcc gattcccacg gataatcccg caacaataat
    16081 gcccgcccat ttctcttttc ttacaataag caaaataatt cccacaacaa ctcctatgaa
    16141 tgtgagtata aataagctga ctaataatat aagtaacata cccaaagtaa aaaatcctct
    16201 ctgacttacc gttttctcta ttttacaata ggcatccgtg gaaagatagc aaaaaatata
    16261 aaaagacata atcattaaga aaatgttata ataagacgtg taaaaaaggg aggcttacca
    16321 catggagaaa tgcgaaggaa tcgtgatacg gcaaacgagt taccgtgaat cagataaaat
    16381 tgtccgaatg tatacacgtg aatttgggaa gattggtgtg gtggctcgtg gggcaaaaaa
    16441 aacgaaaagc agattagctg cagtaactca attatttacg aatggttatt ttactttctt
    16501 tggtagcaat ggccttggta cgcttcagca aggggaagtc atagaaaatt tttcttctat
    16561 tcagcaagat atttttatga ctgcttatgc gacttatgtt tgcgaattgc ttgataaagc
    16621 cactgaagaa cgccaaccga atccatatct atatgaatta acttttcaaa ttttgcgaga
    16681 tataaatgaa ggatatgatc cgcaaattct cactcaaatt tttgaaatga aaatgttacc
    16741 ggtgcttggt ctttacccaa caatggataa gtgcgccatt tgtggtgaaa caacaggtca
    16801 ttttgatttt tcaacaagta gtaatggcat tatctgtcat cgttgctttg agaaagaccg
    16861 ttacagaatg catttgccag aaaatgtcgt aaaattgctg cgtttgtttt tcatcttcca
    16921 attagataga ctaggaaaca tcgatgtgaa gccagaaacg aaagaatggc ttcaaaaagc
    16981 aattgataca tactacgatg aatactctgg tttgtattta aaaagcagga aatttttgcg
    17041 cgaaatggac aaatgggaaa atatgttaaa aaaagatagc gatgattgac tttttagcaa
    17101 aaatacagta tcttttaata tatcaactaa taggtacgtt gaaggaaaat agtaacaaaa
    17161 agctctattt ttagcgagtc cgggtttggt gtgagccgga tatttaactt tttgtgaagg
    17221 cgttctggag tacagcgaaa tcaaggtggg aattgtttta attccaaata gggtggaacc
    17281 gcgagctaac tctcgtccct atatgcttta aatcagcata tagggacgag agtttttata
    17341 ttggctgaat tatttttgga ggtggaagca atgaatttac aaacaatgat tagaacatta
    17401 caagattatt ggtccgaaca aggttgtatt atgttgcaat cgtatgatgt ggaaaaaggt
    17461 gctggcacaa tgagtccgta tactttctta aaagcaattg gtccagagcc gtggaaagcg
    17521 ggttacgtag agccgtcgcg tcgtcctgct gatggtcgtt acggagaaaa tccaaacaga
    17581 ttattccaac atcaccaatt tcaagtagtg atgaagcctt ctcctgacaa tattcaagag
    17641 ctttacctag gttctttaga aaaattaggt atcaatccgt tagaacatga tatccgtttt
    17701 gtagaggata actgggagaa tccatctctt ggttgtgcgg gccttggttg ggaagtatgg
    17761 ttagatggaa tggaaatcac acaattcact tatttccaac aagtaggtgg cttagaatgt
    17821 ttccctgtta cttccgaaat cacttacggt gtggaacgtt tagcaagcta tattcaagat
    17881 aaagagaatg tatttgattt agaatggaca gaaggtatta gctaccgtga tattttcttc
    17941 caagcagaat tcgaaaactc gacatatgct tttgaaactt cgaatacaga tatgctgttg
    18001 acactttttg acacatatga aagagaagcc actcgccaaa tgcaagacgg ccttgttttc
    18061 ccagcatatg attacgtatt gaaatgttcg catacgttta acttactaga tgctcgcggc
    18121 gttgtttcag taactgaacg cgcacagtat atcggtcgta tcagaaactt agcaagacgt
    18181 atcgccaaaa cattttatga atcacgagaa aaacttggct tcccattagt caaagaagag
    18241 ggaggaaaac gtcatgagta aagacttttt attagaaatt ggtttagaag aaatgccagc
    18301 aaaatatgtg actagctctg tactacaact ggaaaaacga gtaactgatt ggttaaaaga
    18361 caaccaaatc gaatttaaag aaattaaaac ttattctaca ccaagacgtt taactgtcct
    18421 agtagaagaa atggctgaag aacaagctaa tcgtgtggaa gaagcaaaag gccctgcaaa
    18481 aaaaatcgct ctagacgacg aaggcaactg gtcaaaagca gcattagggt ttgcaaaaag
    18541 tcaaaaagtt gcgccagaag atttaacttt ccgcgaaatt aaaggtgttg aatatattta
    18601 tattaaaaaa gaagtaatcg gcgaaaaaac aacggcgtta cttccaagct tagaaaaagt
    18661 agtaacaagt atgactttcc cagtaagtat gcactggggt agtaatgatt tacgttatat
    18721 tcgtccaatc aaatggctta tcgcaatgtt tggcgaagaa attattccat ttgaaatcac
    18781 tggtgtctca actagtaata catcccgtgg acatcgtttc ttaggaaaaa cagctacaat
    18841 caaccaaccg agcgactatc caaatgcatt attagaacaa tttgtcgttg ttaatgctag
    18901 tgaacgcaaa caggctattg tagaacaatt acgtgaacta gaaacgatgg aaaattggca
    18961 aatcagagaa gatgacgact tattagaaga agtaactaat cttgtcgaat atccaactgt
    19021 actagcaggt aattttgaaa aagaatatct ggaactaccc gaagaagttt taattacgac
    19081 gatgaaagaa caccaacgtt acttcccagt tttcagccaa gaaggagaat tgttgcctca
    19141 ttttgtaacc gttcgtaatg gtaaccatga aaatctagat acagtggcac gaggaaacga
    19201 aaaagtacta cgcgctcgtt tgtcagatgc tgatttcttc tatcaagaag atttaaaaat
    19261 aaccattgat gaagcagttg ctaaattaca aaatatcgtt ttccatgaaa aattaggcac
    19321 tttgacagaa aaaatgaaac gagtgcaaaa agtggcatta atgcttgctg attatttaaa
    19381 ttggcaagaa gaagataaac aagacattat ccgcttaaca aatatttata aatttgattt
    19441 agtaaccaat atcgttggtg aattccctga actacaaggt ttaatgggcg aaaaatatgc
    19501 attgttgcaa ggcgaaaaac cagcaatcgc aacagctatt cgtgaacatt atttaccaag
    19561 ctcagcagaa ggcgatttac cacaaacaga cttaggttca cttatcgcta ttgcagataa
    19621 attagaaaca ttaattggct tcttctgtgt aaatattgca ccaacaggct ctgctgatcc
    19681 atttggttta cgtcgtagtg cttttggagc ggtgcgtatt atccaagcaa atggttggga
    19741 cattccaatg cttgaagtgg tttctcgtat tgtggatatg gagcgtgcag aaggggctac
    19801 agaactacca agttcagatg taataaaaga agtgcagact ttcctaaaaa atcgtttgcg
    19861 tgttatttta caaggccatc atattcgcca tgatattatt gacgctgtta tcggcggcga
    19921 tcctaatatg attcctcaat tgattgatcg tgctcaaata ttgaataagc atgcggacgc
    19981 agagtggttc cgcccaacta tcgaagcctt aacacgagta gttaatattt ctaaaaaata
    20041 cgaagatggc gtagaagtgg atccgagcct atttgaaaat gaatacgagc aagccctatt
    20101 tgataaatta gaaaaactaa aatttgattt tgctggttta aaaattgttg acagactaaa
    20161 agcatttgca gatttacgta caacaattga tgcatatttc gataacacgc tagttatgac
    20221 tgataatgat gaattgaaaa ataatcgtct tgcactatta ttcgaacttg caagctttat
    20281 taaagagttt gctcaaatgg atgaaattaa tgtaaaataa aaggaagatt ttgagcaaag
    20341 aggaggaagt atgtatgact caaccagccg tatacgtggt ttccgattca acaggagaaa
    20401 cggccgaact agtgacaaga gcagcactaa gtcaatttgg tcaaacaccg aaatttatcc
    20461 atcgttttca ccacgtcgat tcttctcata tgattgaaga aattgttgac ttagtggcag
    20521 tgaacaatgg cataatcgtg cacaccattg tactcgaaag cgtccgtgaa gagcttaata
    20581 aaactgctca agctttcggc gtaccgataa ttgacttatt tgggccgctt ttaaatcagt
    20641 tagaagaaac ctacaaaatc aaaccacttt ctgaacctgg ccgcgttcgt tctatggatg
    20701 aagcttattt caataaagta gccgcaatcg aatttgccgt agagaatgac gacggccgta
    20761 atccaagagg tattttacaa gcggattatg ttttaatcgg tatttcaaga acttcaaaaa
    20821 ctcctttatc gcaatatttg gcgcttaaag gattaaaaat cgtcaatatt ccaatcgttc
    20881 cagaagcaca aatcccagat gaactttttg aaattgaccc taaaaaaata attggtctaa
    20941 aaattagtaa acaaaaatta acgaagatta gaca
//
LOCUS       DASDXX010000030        20743 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.030, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000030 DASDXX010000000
VERSION     DASDXX010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20743
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.030"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..998
                     /locus_tag="U0280_000882"
     CDS             <1..998
                     /locus_tag="U0280_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HEM2270836.1"
                     /translation="NFKYDEIFNELLPTLIYCAGMLANLLVFSFLLRKLIEKVNISRF
                     VEHRKYAYIIFSIVALTVLAFYMNIYAGSIAGFDGSVLKINTLIFTGYTILLIVIVTV
                     VINTATNELKVQNQKEQLEQLQDYVTTLESLHREMRVFRHDYVNILSTLVGYIDNNDM
                     PGLKYYFENNIVPINKTIESNNYKISLLQNIHVIELKGLLAVKLIRAQELKIDAILEV
                     VEPIDKISMDSIDLCKVVGILLDNAVEAALTCENPVIRIAFVKKGDSIIIVFANSLPV
                     NMPPIYKIFEEGFSTKGEGRGLGLASLREIMKKYSHVALDTKVTDREVIQELEIM"
     gene            1017..1745
                     /locus_tag="U0280_000883"
     CDS             1017..1745
                     /locus_tag="U0280_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2270837.1"
                     /translation="MLPVFICEDNRMQRERLTKYIEDYIMVEHFDMKLELSTGDPFEL
                     VSRMPTHQGMGLYFLDIDLGQPDMNGFELAQEIRKFDPRGFIIFITTHAELSYMTFTY
                     KVEALDYIIKDDIDLLHDRVLACMKQAEERISNDQDMQKYFTFKVSDKKIIHELLDDI
                     LFFETAPTIHKVILHGKNRQVEFYGKLKNIEKMLDESFYRCHRSYIVNKKNIHELDTT
                     KGVVKMSNGENCYASSKLIKSLSL"
     gene            1912..3885
                     /gene="pdeA"
                     /locus_tag="U0280_000884"
     CDS             1912..3885
                     /gene="pdeA"
                     /locus_tag="U0280_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase PdeA"
                     /protein_id="HEM2270838.1"
                     /translation="MSGYFQKRMLKYPLYGLIAATIILSVITFFFSWWLSALVVVGGI
                     ILTVAMFYFEYRLNEDVQLYVSNLTYRIKRSEEEALVEMPMGILLYDEHYKIEWVNPF
                     MSKYFDKAELIGESLEEVGPEFLDVITGNDEKGIMSIAWRDHRFDTIVKRKERILYLY
                     DRTEYYDLNKKFQANKSVFAVIFLDNYDEWAQGMDDRRRSALNNLVTSMLTNWAREHR
                     IYLKRISTDRFMAFLTEEMLKRLEEEKFQILDRIRERTSKQNIPLTLSIGIGYKEDDL
                     IQLADLAQSSLDLALGRGGDQVVIKQPEGKVRFYGGKTNPMEKRTRVRARVISQALQE
                     LITQSDQVFVMGHRYPDMDVIGSSLGVMRIAEMNDRNAYVVVEPGKMSPDVKRLMNEI
                     EEYPNVIKNIVTPQVALENITEKSLLVVVDTHKPSMVINKELLDSATNVVVVDHHRRS
                     EEFVGSPVLVYIEPYASSTAELITELFEYQPDLEQVGKIEATALLSGIVVDTKNFTLR
                     TGSRTFDAASYLRSLGADTILVQQFLKEDITTFTQRSRLVESLEIYHDGMAIATGHED
                     EEFGTVIAAQAADTMLSMEGVQASFVITLRPDKLIGISARSLGQINVQVIMEKLGGGG
                     HLSNAATQLKDVTIAEAEKQLISAIDAYWKGET"
     gene            3888..4334
                     /gene="rplI"
                     /locus_tag="U0280_000885"
     CDS             3888..4334
                     /gene="rplI"
                     /locus_tag="U0280_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEM2270839.1"
                     /translation="MKVIFLKDVKGKGKKGETKNVADGYANNFLIKNGYAVEANNAAL
                     STLSAQKKKEDKLAAEELAEAKALKEKMENLTVELKAKSGEGGRLFGSITSKQIAQTL
                     EKTHGIKIDKRKMDLPEAIRALGHTKVPVKLHHEVTATLDVHVSEE"
     gene            4359..5711
                     /gene="dnaB"
                     /locus_tag="U0280_000886"
     CDS             4359..5711
                     /gene="dnaB"
                     /locus_tag="U0280_000886"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM2270840.1"
                     /translation="MDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFY
                     RTGHQIIFETMLDLNDHGKAVDVLTVYEALAAKGNLEDAGGLPYLTELSGAVPTAANL
                     EYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFK
                     NIKDVLVKTYDDIEILHNRKGDITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTA
                     FALNIAQNVATKTDENVAIFSLEMGAEQLVMRMLCAEGNINAQNLRTGALTSDDWQKL
                     TIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQETGLGMIVIDYLQLIAGSGRGGEN
                     RQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADI
                     VAFLYREDYYDREGENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA
                     "
     gene            5969..7261
                     /locus_tag="U0280_000887"
     CDS             5969..7261
                     /locus_tag="U0280_000887"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEM2270841.1"
                     /translation="MSSVVVVGTQWGDEGKGKITDFLSENAEAIARYQGGNNAGHTIK
                     FDGVTYKLHLIPSGIFYKEKISVIGNGMVVDPKALVEELKYLHDKGVDTSNLRISNRA
                     HIILPYHIRIDEADEERKGANKIGTTKKGIGPAYMDKAARVGIRIIDLLDKETFKEKL
                     EHNLGEKNRLLERFYELEGFKLEDILEEYYDYGQQFKEYVCDTSVVLNDALDDGKRVL
                     FEGAQGVMLDIDQGTYPFVTSSNPIAGGVTIGSGVGPSKINHVVGVAKAYTTRVGDGP
                     FPTELFDTIGDTIREVGHEYGTTTGRPRRVGWFDSVVVRHARRVSGLTDLSLTLLDVL
                     TGIETLKICVAYKLDGKTITEFPASLKDLARCEPVYEELPGWTEDITGVTSLDDLPVN
                     CRHYMERIAQLTGVQVSMFSVGPDRAQTHVIKSVWRLA"
     gene            7564..7857
                     /locus_tag="U0280_000888"
     CDS             7564..7857
                     /locus_tag="U0280_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion target"
                     /protein_id="HEM2270842.1"
                     /translation="MSGQIRMSPSELRDRAKTYGQSGRDIEDILSRLSQLQEQLRSEW
                     EGQAFMRFDDQFEQLKPKVTEFANLMDQINDQLEKTANAVEEHDQQLSQNFGF"
     gene            8006..11212
                     /gene="esaA"
                     /locus_tag="U0280_000889"
     CDS             8006..11212
                     /gene="esaA"
                     /locus_tag="U0280_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EsaA"
                     /protein_id="HEM2270843.1"
                     /translation="MKKVKWSILLFLVLAIFLSAGITYLALNQSSNKESKNNSEKTHK
                     MTIALVNEDQGDNFQGKQVEFGNQFVKSIEKDDTHEWYVVSRGVAESGLKRDVYNMMI
                     VIPSDFSEKAMSMTSSAPEKVTISYKVNDVGNSDLKAEAEKTAASVLEDFNSRIIDVY
                     FASILTTLQEAQDNIGTLVKEEKKYDAIYNKDVNNPLSSYTKQFKTVQDYTGTSKESF
                     QGFQDIMKEFEESLNLSQKENEEHMKNMDAFTKTQEENAPFGAEFTENLSKFDGTLSA
                     EDIRMQTAALEQANAKMTSEFQILEDSNSLLSQTQALQSYIAETNARIDAVDAEIMGT
                     LENHFRTAVYNDLLRILRENEYSDKLNEIGLKDLTGEDINAGFNKMIVKEIQSLPTYN
                     ADQLASIGLDEEMYKNVVTLSKEYYSNHRSAFGEGFSFTTDPKTLPTDTLKSDTINRL
                     KSEGVTLESSSYTVEGSDYPTEIILTLDENFTFSDVDCLVNGSSNPELVQQTAYGENG
                     IKLSIQALGSTPAEIKITGKAKLREGVNVPLIGAVNWNATLQQYEKKEYSEMPTIPSE
                     LDPTTPDTSLIVRKEPVPIKVTAPTYLNETKSSVKAITNTVKDYYKLQALFDLYYGID
                     ASDSGQIPDFSNYQVTLENSAKASSYYYIFNKEDVIGSFVNLTTDRFVADYTKKIKAF
                     EKRIDDYKNTMAEANSRSEDVTNRLNETTQEAINLNTNLALTLQNLESWREASKGLIE
                     ENGVVLEKSGEEATMALQLSSEFAGLLAESESLAGTSEGNLKSAEVVYKTFEAIDKEA
                     KNIQQSGETLVKEASTLSDDLSEKLEDDETFQKNFAKVMENSRVGDRQNENLYSFLSS
                     PVDKMNAGTIVAGDKSMPYFMILICTILAIFTSYVISHQEKKREQLNEFEKEMSLVFK
                     NIPITFLAICVGIIEGLIIGAISGFIFEVGEIGMFLWIGVCVLIMMTLVTAFSYLLRQ
                     FNMIGMSIILLVLSLYLFLTDAVGLNIDNESIFATFRTFSPLQYMEYLLNGILSAQKD
                     YIIVVYSLIGAALLFTGLNLFVWHRSKEEVEEDDSDEI"
     gene            11202..11717
                     /gene="essA"
                     /locus_tag="U0280_000890"
     CDS             11202..11717
                     /gene="essA"
                     /locus_tag="U0280_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssA"
                     /protein_id="HEM2270844.1"
                     /translation="MKFKIAALLMLLCFAFAPGVLAADSDSYLENNGKMDIKTDRLQK
                     TEEEKTKELEQMEETELDKNGIPLFTDEMDEKIAKEKAAEKAEYDRIKDSLFEEESTS
                     GETVKKTKEKLFTDEYETTAVNTETPTTTETTVEDETKKTKQKTVGGAIAGTLVALAG
                     GIYVAARNVFE"
     gene            11735..11986
                     /locus_tag="U0280_000891"
     CDS             11735..11986
                     /locus_tag="U0280_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EsaB/YukD family protein"
                     /protein_id="HEM2270845.1"
                     /translation="MAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKI
                     DYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL"
     gene            12008..13204
                     /gene="essB"
                     /locus_tag="U0280_000892"
     CDS             12008..13204
                     /gene="essB"
                     /locus_tag="U0280_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssB"
                     /protein_id="HEM2270846.1"
                     /translation="MNKTIEMDGTTYDFTYEDLVWSITFPKSKTRAKELAQLELLEKP
                     ATHFTPAKISSDSDSYTISYEIAKRTYGFEQVRKMGREDKLRALRNIADLGELLNTRY
                     TFFLHPDNLIFDINLVPSIVHRGIKNILPPYELTEETFFKQYQCFVIAMFSKKFSFEN
                     LYNGSLSGARGTQFEKSILDAKTVQDIATILEEAYVKEHAAVQKNMASVPKKKYSTFR
                     GLAVGFIIVAILLAIPVSYFAFVKVPLQNDLLTANENFLKTDYDKVITGLENVDPEKM
                     PQSVQYELAYSYVKGEKMSDKKKENIMNTISLKSDAKNLLYWIYNGRGEFSKSLDIAK
                     LLDDPTLAMYSLTKQIEQVQSDTTLSGDEKVEKLKTLEESLKEYDEKVNESTTTEDET
                     TNTEAK"
     gene            13218..17714
                     /gene="essC"
                     /locus_tag="U0280_000893"
     CDS             13218..17714
                     /gene="essC"
                     /locus_tag="U0280_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssC"
                     /protein_id="HEM2270847.1"
                     /translation="MNREALLIVSNGQQCHKNHLSPEKVVTIGNTIEHEITYPELAES
                     IEVKYDEGSWNAGTTALQANQAVNVENLAFYLCQDLHTQVYDVVTNISVTFGVGIEND
                     VTLDDTKSDFILLRDAKEKLFKLQVLNGEVYHNFSLVTEDCVLEPGDQLYTDGVTITI
                     GKEDISVLAVKNRVTSKLAPLFAADNSFGEDYPDYHRSPRIIYRAPEEKISMAKPSSK
                     PSKPTDGLIKIILPPLIMVAITVMISIFQPRGLYIIMTIAMSAVTITMAILNYIKSRK
                     KYKIDSKQRVESYDLYLKRKTKELHETSEKQRHALTYHYPDVTELEKMALRVDSRIYE
                     KTMFHHDFLTFRVGRGDEASSFSVEFQQEEFSQEKDELVEEAVKIKGQYLSINEVPVA
                     TDLMHGPVGYIGPRRLVLEQLQMLVMQTSLFHSYYDLQFITIFPEEEKADWDWMRWLP
                     HANMRDVNVRGFVYHERSRDQVLNSLYQILKERKQALTEQASKQEKLYFTPHYVVLIT
                     DEKLVLDHTVMEFFNEDPSELGVSLVFVQDVMESLPEHVKTVVDIRDAKSGNIILEQG
                     DLVNRAFVPDHLPADFDKEVISRALAPLNHLQNLKNSIPESVTFLEMYGVERVEELNI
                     AGRWAKNETYKSLAVPLGLRGKDDIVQLNLHEKAHGPHGLVAGTTGSGKSEIIQSYII
                     SLGVNFHPYEVAFLLIDYKGGGMANLFKNMPHLLGTITNLDGAQSMRALASIKAELQK
                     RQRLFGEHDVNHINQYQKLYKQGKATEPMPHLFLISDEFAELKSEQPEFMKELVSTAR
                     IGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQNASDSNEILKTPDAAEITLPG
                     RSYLQVGNNEIYELFQSAWSGADYVPDKESTDYIDTTIYAINDLGQYDILTEDLSGLD
                     KKDDLTKLPSELDAVIDHIHAYTEASGIKALPRPWLPPLPERIFAQDLHPVNFEEAWK
                     EPKKPLQATIGLLDQPELQAQVPLTLDLTKDGHVAVFSSPGFGKSTFLQSLVMDLARQ
                     HNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQKFLRICLNEIKTRKKLLS
                     QYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDFEKIITQITREGASIGMFM
                     IISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDTPLEEYPGRALVKLETVT
                     TFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIPEKIKLADFCEWMETK
                     EVVANGNIPIGVDFEYVKPVGIDYKQTGVLIIADVIGRNLVSINKNVANSLVQNPNIS
                     LLISDTANFDLVEMSTKANLYSNNTEDLKQNMKKVLSIYQSRTEKADELRKAGDNLGV
                     TAMIQGLKDIVAFVGDYDILLKTLDEEDQKVLIDMINNGKTYGCYLILSGSIQAFKGY
                     GDLNKAVQAQRNYIFFDRLSNSSPFSFSFNIYREQELLPEEGYVIAGQEWQKIKIAKY
                     EEEV"
     gene            17720..18037
                     /locus_tag="U0280_000894"
     CDS             17720..18037
                     /locus_tag="U0280_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4176 domain-containing protein"
                     /protein_id="HEM2270848.1"
                     /translation="MLTKEILPIGSVVYLKESLKKVMITSRLITIQGDEEKEFYDYGG
                     VVYPEGTKDDNILAFDAEDITDVKFRGFVDDDEVVLVKRMREWQKEEFGVSPEEEDEM
                     LEL"
     gene            18027..18461
                     /locus_tag="U0280_000895"
     CDS             18027..18461
                     /locus_tag="U0280_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270849.1"
                     /translation="MNYDERVRVLIELKVDLSGKLEMMENEEALLCRQKHDFASAWSN
                     AKTEDAYRKLNEAVRKKIKETTEYAREIDEKITARIKRIEAAYKAEYQSNRSYTWRIA
                     EIDPIKFKEKYNERLNQLSYLSCDGSVKTRLIKEFRQNNFLK"
     gene            18473..18781
                     /locus_tag="U0280_000896"
     CDS             18473..18781
                     /locus_tag="U0280_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270850.1"
                     /translation="MVSPMPDKTVKMDKGSINPKLDKLISSLDNFDNINKKMGTIVGS
                     QEISGEAADALSESLLVLVSYGEQYSLVIRNLKEVIVDYCKSVEEIDKTAANAVSKGV
                     "
     gene            18800..19441
                     /locus_tag="U0280_000897"
     CDS             18800..19441
                     /locus_tag="U0280_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270851.1"
                     /translation="MKSRNWLKGLGVTMIVVTLILTGCGNGDAEKTDTKEQTKSVEEE
                     GKEVKIESNEGKPQHEQLITVKLPPEAEYLNDETLEVYEQDKKKYDQTEQLITNNSVT
                     ILLGDFCYYEPAWSSLTCSAILVNGTDTNIEDLSFKAEIMNKPMSGKIFSDDKVPELT
                     KAKTGKFQPNEGIPIILVFSEENPKNEENAEPQKINIKDIKVKIKDIQYKAVK"
     gene            19453..19767
                     /locus_tag="U0280_000898"
     CDS             19453..19767
                     /locus_tag="U0280_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HEM2270852.1"
                     /translation="MAKEIKVNPDFLKKVESNVTNYIDAQKEVSVELLAVRTNLASNF
                     SGIACDEIKNYITELMNDLEKEFGVFITRNHEKVKALGESYKELDGQLGQTFNYGMER
                     TK"
     gene            19764..20726
                     /locus_tag="U0280_000899"
     CDS             19764..20726
                     /locus_tag="U0280_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270853.1"
                     /translation="MSGKIKFNIAEAQNISLELKIAAGRYTQETEELLKVLKNNSLCD
                     KDQDVVEQRGRIEKNNQRLIEYEKFVNTNLAKSNSVIEELFMSVEVLYAQQVSEFRNP
                     NSAGYKELMGNVKAISYQKISQISGLGEMLTSKGSVGAIKDIRDTLLGTLVDDTYLKL
                     IDDTVEYQGENKNITDLYGDKISKVGSRRKKLDTPTKYLSTAYLISDTLKSFNSYGNS
                     KDSSRLAGDLTGIAITKGADFAVGKLATTALSGFGVSGVKGAIAGAIISVAADKIIDP
                     TVEYVKESKVEAKRDDWETKGIYKGWKKIRDLKLEYTMGNYQAS"
BASE COUNT         7211 a         3162 c         4583 g         5787 t
ORIGIN      
        1 tgaactttaa atatgatgag atatttaatg aactgttacc aacgttaatt tattgtgcgg
       61 gaatgttggc gaatttgttg gtattttcgt ttcttcttag aaaattgatt gaaaaagtta
      121 atatttctag atttgtagaa catagaaaat atgcatatat tattttttct atcgttgctc
      181 ttactgtctt agcattctat atgaacattt atgcgggatc aatagcggga ttcgatggat
      241 cagttttgaa gattaatacc cttattttta cagggtacac cattttgtta atagttatag
      301 tgacggttgt tattaataca gcaaccaacg aacttaaagt acagaatcag aaggagcagc
      361 tagaacagtt acaggattat gttactacat tagagtccct gcatagagaa atgcgcgttt
      421 ttcgtcatga ttatgtgaat atcctgtcaa cacttgttgg atatattgat aataatgata
      481 tgccgggttt gaagtattac tttgaaaata atattgtacc tataaataaa acaattgaat
      541 ctaacaacta taagatttct ttgcttcaaa atattcatgt gattgaacta aagggtttgc
      601 tagctgttaa attaatacga gctcaagagt tgaaaattga tgcaatttta gaagtagttg
      661 aaccgattga taagatttcg atggatagca tagatttgtg taaagttgtc gggattttgc
      721 tagataatgc ggttgaagca gcgctaactt gtgaaaatcc agttattcga atcgcttttg
      781 tgaaaaaagg tgatagtata attattgtat ttgcgaatag tttaccagta aatatgccac
      841 cgatttataa aatatttgaa gaaggtttct ctacaaaagg agagggtcgt ggattaggcc
      901 ttgctagttt gcgggaaatt atgaagaaat attcgcacgt tgccttagat acgaaagtga
      961 ccgatagaga agttattcaa gaattagaaa ttatgtagaa gaatggggat gaatttatgc
     1021 taccggtttt tatttgtgaa gataacagaa tgcagcgaga aaggttaacg aaatatattg
     1081 aagactatat tatggttgaa cattttgata tgaagttaga actttcaaca ggagatccgt
     1141 ttgagttagt atcacgaatg cctacacatc aaggtatggg gctttatttt ttagatattg
     1201 atttagggca gccggacatg aatggttttg aattagctca ggaaattcgg aagtttgatc
     1261 cgcgtggttt cattattttt attacaacac atgcggagtt aagttatatg actttcacgt
     1321 ataaggtgga agcgcttgat tacattatta aagacgatat tgatttgctg catgaccggg
     1381 tacttgcctg tatgaagcaa gcagaagaac ggatttccaa tgatcaagat atgcagaagt
     1441 attttacgtt taaagtgtcg gataagaaga ttattcatga acttttagac gatatcttat
     1501 tttttgaaac agccccaact attcataaag taattttaca tggcaaaaat cgccaagtgg
     1561 aattttatgg taagttgaag aatatcgaga aaatgttgga cgaatcattt tatcggtgcc
     1621 acaggtcgta tattgtgaat aagaaaaata ttcatgagct ggatacgaca aaaggtgtgg
     1681 tgaagatgtc taacggtgaa aattgttacg catcatcgaa attaattaaa agcttgagtt
     1741 tataaaagtg gccttaaagg tcgctttttt tgtacagtgg caagtttgga tttgatgaaa
     1801 tgggtaaata taggtaaaat aatagtgatg aattgttagt taagtttatg ttatgatata
     1861 gatactcaaa ttcagacaaa aggtatgtaa aaaaatgggg agctggatga aatgtcaggc
     1921 tattttcaaa aacgaatgct taaatatcca ctatacggtc tgattgcagc gacaattatt
     1981 ttgagcgtaa tcacgttctt tttttcgtgg tggctatcgg cgttagttgt tgttggcgga
     2041 attattctta cggttgcgat gttttatttt gaatatcgct tgaatgaaga tgtgcaacta
     2101 tatgtttcta atttaacgta tcggattaag cgtagtgaag aagaagcgct tgttgagatg
     2161 ccgatgggaa tacttctgta tgatgaacat tacaaaatcg aatgggttaa cccgtttatg
     2221 tcgaaatact ttgataaggc agagctaatt ggggaatctt tggaagaagt aggacctgaa
     2281 tttttggacg ttattactgg gaatgatgag aaggggatta tgtcgattgc ttggcgtgat
     2341 caccgttttg atacgatagt aaagcgtaag gaacggattt tgtatttata tgaccgaaca
     2401 gaatattatg atttaaataa gaagtttcag gcgaataaat ctgtttttgc ggttattttc
     2461 ttagataatt atgatgaatg ggcgcagggc atggatgata gacgtcgcag tgctttaaat
     2521 aatttggtga cgtcgatgtt gactaactgg gccagagaac atcgtattta tttgaaacgg
     2581 atttcgacag accgctttat ggcctttttg acggaggaaa tgttgaagcg gttggaggaa
     2641 gagaagtttc aaatcttgga ccggattcgc gaacggacgt cgaagcaaaa tattccatta
     2701 acgcttagta ttgggattgg ttataaggaa gatgatttga ttcagctggc cgatttggca
     2761 cagtctagtc tggaccttgc tttagggcgc ggcggagatc aggtcgtaat taagcaacct
     2821 gaaggaaaag tgcgttttta tggcgggaaa acaaatccga tggaaaaacg gactcgtgtt
     2881 cgcgcacgtg ttatctcgca agccttgcaa gagttgatta cgcaaagtga ccaagttttt
     2941 gttatggggc accgctatcc ggatatggac gtaattggtt cgagtcttgg agtgatgcgg
     3001 attgcggaga tgaatgatcg gaatgcttat gtggtcgtgg aacctggcaa aatgagtcca
     3061 gatgtgaagc gattaatgaa tgaaattgaa gaatatccaa atgtgattaa aaatatagtt
     3121 acaccgcaag tcgcgctaga aaatatcacg gagaagagtt tgcttgtggt tgttgatacg
     3181 cacaaacctt cgatggttat taataaggaa ttgcttgact cggctacgaa tgtggtggtt
     3241 gtcgatcacc atcgtcgttc agaggaattt gttggaagcc cggtgcttgt ttatatcgaa
     3301 ccatatgcgt catctactgc cgaattgatt acggagctgt ttgagtatca accggattta
     3361 gagcaggttg ggaaaatcga ggcaacggcg cttctttccg ggattgtggt tgatacgaag
     3421 aactttacgc tacggactgg gtcgcgaacg ttcgatgcgg cgagctattt acggtcgctt
     3481 ggtgcggaca cgattttggt tcagcaattt ttgaaggaag atattactac ttttactcag
     3541 cggagtcgtt tagttgagtc gcttgaaatt tatcatgatg gtatggcgat tgcgactgga
     3601 catgaagacg aggaatttgg cacagttata gctgcgcagg cggcagatac gatgctttcg
     3661 atggaaggcg tgcaggcatc ctttgttatt acgctacgtc cggataaatt aatcgggatt
     3721 agcgcgagat cgcttggtca aatcaatgtg caagtcatta tggaaaaact aggcggtggc
     3781 ggacatttat cgaatgcagc cacacagctt aaagatgtta caattgcaga agcagaaaaa
     3841 caattaatta gcgccattga tgcgtattgg aagggagaaa cataattatg aaagttattt
     3901 tcttgaaaga cgtaaaaggt aaaggtaaaa aaggtgaaac taaaaatgtt gctgatggtt
     3961 atgcaaacaa ttttttaatt aaaaatggtt acgcagttga ggctaataat gcggctttaa
     4021 gcactctttc agcgcaaaag aaaaaagaag ataaattagc tgctgaagaa ctagctgaag
     4081 caaaagcttt gaaagaaaaa atggaaaatt taacagtgga attaaaagcg aagtctggtg
     4141 aaggcggcag attgtttggt tctattacat ctaaacaaat tgctcaaacg cttgaaaaaa
     4201 cacatggtat taaaatagat aaacgtaaaa tggatctacc agaggcaatt cgagctttag
     4261 ggcatacgaa ggtgccggtg aagttgcacc atgaagtaac ggcaacactt gatgtacatg
     4321 tgagtgaaga ataatttttc ttaagggagc gtaagacagt ggataataat ttccaggaca
     4381 gaacaccacc acaaaatatt gaagccgaac aagctgtact gggcgcgata tttcttgagc
     4441 caaatgcgct gattactgct tctgaaattt taatgccgga tgatttttat cgaactggtc
     4501 accaaatcat tttcgaaacg atgcttgatt tgaacgacca cgggaaggct gtcgatgttt
     4561 taacagtata tgaggcgctt gctgccaagg gtaatttaga agatgcgggc ggtttgcctt
     4621 atttgacgga attatccggt gctgtaccga ctgcggctaa cttggaatac tatgcccata
     4681 ttatcgagga caaggcgctt ctaagacgtt taattagaac tgctacccaa attgcaacag
     4741 atggatattc gcgcgaagac gagctcgata tgcttatgga cgaagcggaa aagagtatct
     4801 tggaagtttc gcaacgtaaa aatgttggtg cattcaagaa tattaaagat gtcctagtta
     4861 aaacttatga tgatattgaa attttgcata atcgcaaagg tgatattact gggattccaa
     4921 ctggatttaa cgagctggat aaaatgacag ctggatttca gcggaatgat ttaattattg
     4981 ttgccgcgcg tccttctgtt ggtaaaacag cattcgccct aaacattgcg caaaatgttg
     5041 caacgaaaac cgacgagaat gtggccattt ttagtttgga aatgggtgcg gaacaacttg
     5101 ttatgcggat gctttgtgcg gaaggaaata ttaatgcgca gaatttacgg acgggtgctt
     5161 taacgagcga tgattggcaa aagctgacaa tcgcgatggg tacactttct aattcgggga
     5221 tatatattga tgatacgccg ggtgttcggg tgaatgaaat tcgttccaaa tgtcgccgtt
     5281 taaaacaaga aactggtctt ggtatgattg tgattgatta cttgcaactg attgcaggga
     5341 gcggtcgtgg tggcgaaaat agacaacaag aagtttctga aatttctcgg tcgttaaaag
     5401 ctttggcgcg agaacttgaa gtgccggtta ttgcactttc gcagttatct cgtagtgtag
     5461 agcaacgtca agataaacgc ccaatgatgt cagatattcg tgaatctggt tcgattgagc
     5521 aagatgccga tatcgtagcc tttttatacc gggaagatta ctatgaccgg gaaggtgaaa
     5581 atgatggcac gattgagatt attattgcga aacaacgtaa tggtccagtt ggtgacgtga
     5641 aactagcctt tgtaaaagaa tacaataagt ttgtgaattt agaagtgcgg tacgacgacg
     5701 caatggctta atgaggaaac cttgtgaaat tcaaattaga tttggagttc gcaaggtttt
     5761 tattttatgc aaaaaggtaa cgtattacta ttaatggact ttgaaattcc cgtaaaaaga
     5821 ttaaaaaagc gaacgataaa attaccttac aaatcaatgt tcgtaaatcc attgactatt
     5881 ttggtggcaa acggtacaat gtatagtgga aaatgaagag gctatgaaaa cgcatagcta
     5941 tcaaagacca attaaatgag gtgtttaaat gtcttcagtt gttgtagtag gaacacagtg
     6001 gggcgatgaa ggaaaaggga agattacaga ttttctttcc gaaaatgcag aagcgattgc
     6061 tagatatcaa ggtgggaaca atgcaggcca tacaattaag tttgatggcg taacgtacaa
     6121 attacactta attccatcag gtatctttta caaagaaaaa attagtgtta ttggtaacgg
     6181 tatggttgtg gatccaaaag ctttagtgga ggaattaaaa tatcttcatg ataaaggcgt
     6241 ggatacttct aatttgcgta tttctaaccg tgcgcacatt attttaccat atcacattcg
     6301 tattgatgaa gctgacgaag aacgtaaggg cgcaaacaaa atcggtacaa cgaaaaaagg
     6361 tattggccca gcttacatgg ataaagcagc gcgtgtaggt attcgtatta ttgatttatt
     6421 agataaagaa acatttaaag agaaattaga gcataatctt ggcgagaaaa accgtttatt
     6481 agaacgtttt tacgaactag aaggctttaa actagaagat attttagaag aatattatga
     6541 ctatggtcaa caatttaaag aatatgtttg cgatacatct gttgttttaa atgacgcatt
     6601 agatgatggt aaacgtgtat tatttgaagg tgcgcaaggg gttatgcttg atattgatca
     6661 aggaacatat ccatttgtaa cttcaagtaa cccgattgct ggtggcgtaa ctatcggtag
     6721 tggcgtaggt ccttcaaaaa tcaatcatgt tgttggtgtg gcgaaagctt atacaacacg
     6781 tgttggtgat ggtcctttcc caacagaatt attcgatact attggggaca ctatccgtga
     6841 ggttggtcat gagtatggta caacgactgg tcgtccgcgc cgtgtaggtt ggtttgacag
     6901 tgtagtggtt cgccatgcgc gtcgtgttag tggcttaaca gatttatcgt taacactact
     6961 ggatgttttg acaggaattg aaacacttaa aatctgcgta gcttacaaat tagacggaaa
     7021 aacaattaca gagttcccgg caagtctgaa agatctagct cgttgcgaac ctgtatatga
     7081 agaacttcca ggctggacgg aagatattac tggagttaca tcactcgatg atcttccggt
     7141 gaactgccgc cattacatgg agcgtattgc acagctaact ggtgtgcagg tttctatgtt
     7201 ctctgtaggc cctgatcgcg ctcaaacaca tgtcattaaa agcgtttggc gtttagctta
     7261 ataaaataaa tatcaagccc atctaaggtg tattcttgga tgggcttttt tgctgtataa
     7321 aaataatagt gattctggaa aagtatacaa ttttttatcc gaaaaattga aaaagttaac
     7381 aaaaggggaa ggtgtttgtg aaaaaggcat ctttttgtat agtgatgttg tttttaaaag
     7441 acctattatc aagtctttat aggagtttta ttcgtatttt tgtcacattt tactttgtga
     7501 attcatgtta taatttgaga gtgatatctt attcacaata gataataaga ggagatgaag
     7561 tgaatgtcag gtcaaattcg tatgagtcca agcgaactac gtgatcgcgc gaaaacttac
     7621 ggtcaaagtg gtcgggatat tgaggatatt ctaagtcgtt taagtcaact acaagaacaa
     7681 ctacgtagcg aatgggaagg tcaagctttt atgcgttttg atgatcaatt tgaacaatta
     7741 aaaccaaaag taactgaatt cgcaaactta atggatcaaa ttaacgatca acttgagaag
     7801 acagcaaacg cagtagaaga gcacgatcaa caactttctc aaaacttcgg attctaaaat
     7861 caacaaaaag tggggcatac atacaaatat cgttggatgc tttacgaaaa gccatgcagt
     7921 tttttgcatg gctttttcta aacatagaaa gcttatgcct aaaaaggtat ttatataaaa
     7981 aagacacagc gggagtggga catgaatgaa gaaagtaaaa tggagtattt tactcttttt
     8041 agtcttggcg atttttcttt cggcaggaat tacttatttg gctttgaatc aaagttcgaa
     8101 taaggagtct aaaaataata gtgaaaaaac acacaagatg actatcgcac ttgtaaatga
     8161 ggaccaagga gacaacttcc aaggtaaaca agtagagttt ggtaatcaat ttgttaaaag
     8221 tattgaaaaa gatgatacgc atgaatggta cgttgttagc cgcggagttg cagaaagtgg
     8281 cttaaaacga gatgtataca atatgatgat cgttatcccg agtgactttt ctgaaaaagc
     8341 aatgtcaatg acttcgagcg ccccggaaaa agtgacaatt agctacaaag ttaacgatgt
     8401 aggaaatagc gatttaaaag cggaagccga aaaaacagca gcttctgtat tggaagattt
     8461 caattcacgg attattgatg tttattttgc aagcatttta acaactttac aagaagcgca
     8521 ggataatatt ggaaccctag ttaaagaaga gaaaaagtat gacgctatct acaacaaaga
     8581 tgtaaataat ccgttatcca gctacacaaa acagtttaaa acggtgcaag actacacagg
     8641 aacttctaaa gaaagcttcc aaggtttcca agatattatg aaagaatttg aggaaagcct
     8701 aaatctctct caaaaagaaa acgaagaaca tatgaaaaac atggatgctt ttacaaaaac
     8761 acaagaggaa aatgctcctt ttggggcaga attcacagaa aatttgtcaa aatttgatgg
     8821 cactttatca gcagaagata ttcgaatgca aacggccgct ttagaacaag ccaatgcgaa
     8881 aatgacttca gaatttcaaa ttttagaaga tagtaattca ttgttatcac aaacacaggc
     8941 cttacagagc tatatagctg aaaccaatgc acggattgat gcggtggatg ccgagattat
     9001 gggaacgctc gaaaatcatt ttcggacggc tgtttataat gacttgttgc gtattttacg
     9061 agaaaacgag tactcggata agttgaatga aattggcctt aaagatttga ccggagaaga
     9121 tattaatgct ggctttaaca aaatgattgt taaggaaata caatcattac caacatataa
     9181 tgcggatcaa ttagcgtcga ttgggcttga tgaagagatg tacaaaaatg ttgtaacgct
     9241 ctctaaggaa tattatagta accatcgcag tgcttttggc gaaggtttta gctttacgac
     9301 tgatcccaaa actctaccaa ctgacacact gaaaagcgat acgattaatc gattgaaatc
     9361 cgaaggggtc acgctagaaa gcagttccta tacggtggaa ggtagcgatt atccaacaga
     9421 aataattcta actttagatg aaaatttcac tttttcagat gttgattgtt tggttaatgg
     9481 aagcagtaat ccagagttag ttcaacaaac cgcatacgga gaaaatggca taaagcttag
     9541 tatacaggcg cttggaagta caccggcaga gattaaaatc accggaaaag cgaagttgcg
     9601 agaaggtgtg aatgttccat taattggtgc tgtaaattgg aatgctacac tgcagcaata
     9661 tgagaaaaaa gaatatagtg aaatgccaac aattccatca gagcttgatc ctactacccc
     9721 ggatacttca ttaatagtta gaaaagaacc tgtaccgatt aaggtcactg caccaacata
     9781 tttgaatgag acgaagagtt ctgtaaaagc aattactaat acagtaaaag attactataa
     9841 actacaagca ttatttgatt tatattacgg aattgatgcg agtgattctg gacaaatacc
     9901 ggattttagt aattatcaag tgacattaga aaattctgcg aaagcatcct cgtattatta
     9961 tatttttaat aaagaagatg tgattggtag ctttgtaaat cttactacag atcggtttgt
    10021 ggcagattat acgaaaaaaa tcaaagcttt tgagaagcga attgatgact acaaaaatac
    10081 aatggctgag gccaattcca gatcagaaga cgtaacaaat agattaaacg aaacgacgca
    10141 agaagctatt aatttaaata caaatctagc gttaacgttg caaaacctag aatcttggcg
    10201 agaggcaagc aaaggtttaa tagaagaaaa tggcgttgtt ttagaaaaat ctggcgaaga
    10261 agccacgatg gcactgcaat taagctccga gtttgccggg cttttagcgg aaagtgaatc
    10321 gttagctggt acttctgaag gtaatttgaa gtcagcggaa gtcgtgtaca aaacttttga
    10381 agcgattgat aaggaagcca aaaatattca acaaagcgga gaaactttag taaaagaagc
    10441 atctacacta tccgatgatt taagcgaaaa attggaagac gacgaaacgt tccagaaaaa
    10501 tttcgctaag gttatggaaa atagccgtgt tggtgatcga caaaatgaaa atctatatag
    10561 tttcttaagt agtccggtcg ataagatgaa tgctgggact attgttgcgg gtgacaaatc
    10621 aatgccatac ttcatgattt tgatttgtac gattctggca attttcacta gctacgttat
    10681 ttcacaccaa gagaaaaaac gtgaacaatt aaatgaattt gagaaagaaa tgtcgcttgt
    10741 ctttaaaaat attccaatta ctttcctagc gatttgtgtt gggattattg aggggctcat
    10801 aataggcgcc atttcaggat ttatttttga agttggagaa attgggatgt tcctatggat
    10861 aggtgtctgc gttctaatta tgatgacgtt agttactgct ttttcatatt tattacgtca
    10921 gttcaacatg attgggatgt cgattatttt actcgtttta agtttgtatc tattcttaac
    10981 ggatgcagtt ggacttaaca ttgataatga atctattttc gcgacgttca gaacgttctc
    11041 gccacttcaa tacatggaat acttattgaa tgggatttta agtgcccaga aagattacat
    11101 tattgtcgta tacagtttga ttggggcggc tctattattt actggtctca acctatttgt
    11161 ctggcaccgt tctaaagaag aagtagagga ggacgattca gatgaaattt aaaatagcag
    11221 cactacttat gttactttgt tttgcttttg ctccgggagt tctcgctgcg gattcagata
    11281 gctatttaga aaacaatggg aaaatggaca tcaaaacaga tagacttcaa aaaacagaag
    11341 aagaaaaaac aaaagaacta gaacagatgg aggaaacgga gctcgataag aacggaattc
    11401 cactttttac tgacgaaatg gacgaaaaaa tcgccaaaga aaaagcggca gagaaagcgg
    11461 aatatgaccg gattaaagac tcactttttg aagaggaatc tacatctggt gaaacagtga
    11521 aaaaaacgaa agagaagttg tttacagacg agtacgagac aacagctgta aacacggaaa
    11581 cacctactac tacggaaaca acagtagaag atgaaacgaa aaaaacaaaa caaaaaacag
    11641 ttggtggagc aattgcagga acacttgtag ctttagcagg cgggatttat gtggctgcgc
    11701 gcaatgtttt tgaatagaaa gcggggagtt ttaaatggct aaaaacacac atatgaatgt
    11761 gacagttgat ttcactaatt ggggagcaag caagtatgat ttgcgaattc cggtgcatca
    11821 accaatcaaa gcattaatta tcaatttggc agaaacgctc aaaatcgatt acaaagattt
    11881 gtccaaatgt acgataaaaa caacgaataa agcgatatta ctaagcgatg atgacaaatt
    11941 gactaatttt caaattgcgg acggagacat cttagaaatt ttatagaaaa aaaggagaat
    12001 aaaaacgatg aataagacaa ttgaaatgga cggaacaact tacgatttta cttatgagga
    12061 tctagtttgg agcattacgt ttccaaaatc aaaaacacgc gctaaagaac tcgcacaact
    12121 agaactatta gaaaaacctg cgacacattt tactcctgca aaaatctcaa gtgatagcga
    12181 ttcgtataca atttcttatg agattgcgaa acgtacttat ggatttgaac aagttcgaaa
    12241 aatgggacgt gaagataaac tgcgcgcact gcggaatatt gcggatttag gcgaattgtt
    12301 aaacacgcgc tatacattct ttttacaccc ggataatctg attttcgata ttaacttagt
    12361 gccaagtatt gttcatcggg gcattaaaaa tatattaccg ccttatgaac taacagaaga
    12421 aacttttttc aaacaatatc aatgtttcgt tattgcgatg ttttctaaga aattctcttt
    12481 tgaaaacttg tacaatggct cgctatcagg ggctagagga acgcaatttg agaagagtat
    12541 attagatgca aaaacggtgc aagatattgc tactatttta gaagaagcat acgtgaaaga
    12601 acatgcggcg gttcaaaaaa atatggcaag cgtaccgaag aaaaaataca gtactttccg
    12661 tgggttggcg gttggtttca ttatcgtcgc tattttactt gcaattccag taagttattt
    12721 tgccttcgtt aaagtccctc tgcaaaatga cttactaacg gcaaacgaga atttcctgaa
    12781 aacagattac gataaagtga ttacaggtct agaaaatgtg gatccagaaa aaatgccgca
    12841 gtctgtccaa tatgaattag cttattccta tgttaaaggc gaaaaaatga gcgataaaaa
    12901 gaaagaaaac attatgaata caatcagctt aaaatctgac gccaaaaact tactttactg
    12961 gatttacaat ggtcgcggag aatttagtaa atcacttgat attgccaaac ttttagacga
    13021 cccaacgctt gcgatgtaca gtttaacaaa acaaattgaa caggtacaaa gtgatacaac
    13081 attaagcggc gatgaaaaag tggaaaaact aaaaactttg gaagaaagct tgaaagaata
    13141 cgatgaaaaa gtaaatgaat caactacaac tgaagatgaa acaacaaata cagaagcaaa
    13201 ataagggaga atggaccatg aatagagagg ctttattaat tgttagtaac gggcagcaat
    13261 gtcataaaaa ccacttgtct cctgaaaaag tcgtgacaat tgggaataca atcgaacacg
    13321 aaatcactta tcctgaactg gctgagtcga ttgaagttaa atacgatgaa ggctcttgga
    13381 atgctggaac aacagcgctc caagcgaatc aagctgtaaa tgtagagaac ttagcattct
    13441 atctatgcca agatttacat acacaagttt atgatgttgt aacgaatatt tctgtgacat
    13501 ttggcgttgg aatagaaaat gatgtcacat tagatgatac aaaatcagat tttatacttt
    13561 tacgtgatgc aaaggaaaaa ctgtttaagt tacaagtctt aaatggcgaa gtttatcata
    13621 acttttctct agtaacggaa gactgcgttc tagaaccggg tgatcagctc tatacggacg
    13681 gtgtgacgat tacaatcgga aaagaagata ttagtgtgct agctgtgaaa aatcgcgtga
    13741 cgagcaaatt agcgccttta tttgctgcgg acaattcgtt cggggaagat tatccggatt
    13801 accaccgttc accgcggatt atttaccgtg cgccagaaga aaaaatcagc atggcgaaac
    13861 cgtcaagtaa accctcaaaa ccaacagatg gcttaattaa aattatttta ccacccctta
    13921 tcatggtggc aattacggtc atgatttcca ttttccaacc acgtggactt tatattatta
    13981 tgacaatcgc aatgtcagca gtgacaatca caatggcgat tcttaactac ataaaatcac
    14041 gtaaaaaata caaaatcgat tccaaacaac gcgtggaaag ctacgatttg tatttaaaac
    14101 gaaaaacgaa agaattgcac gaaacaagcg aaaaacagcg tcacgcttta acctatcact
    14161 atccagacgt aactgaacta gaaaaaatgg cgttacgtgt ggattcgcgg atttacgaaa
    14221 aaacaatgtt ccatcatgat ttcttgactt tccgagttgg tcgaggcgac gaagcaagta
    14281 gcttttccgt ggaattccaa caggaagagt tcagccaaga aaaagacgaa cttgtagaag
    14341 aagctgtgaa aattaaaggg caatatttat caatcaatga agtgccagtt gcgacagatt
    14401 taatgcacgg accagtgggg tatatcgggc cacgccgttt agtattagaa caactgcaaa
    14461 tgttagtaat gcaaacatcc cttttccata gttattatga tttgcaattt attacgattt
    14521 tcccagaaga agagaaggcg gattgggact ggatgcgctg gctaccgcat gcgaatatgc
    14581 gtgatgtgaa tgtgcgtggt tttgtttacc atgaacgttc gcgcgaccaa gtgttgaact
    14641 cgctttatca aattttaaaa gagcgtaaac aagcgcttac tgaacaagcg agcaaacagg
    14701 aaaaattata ctttacgcca cattatgtgg ttttaattac cgacgaaaaa ttagtactcg
    14761 atcacacggt tatggaattc ttcaatgaag atccaagcga actaggtgtt tctttagtgt
    14821 tcgtacagga cgtaatggag agcttgccag aacacgtgaa aacggtcgtg gatattcgtg
    14881 atgcgaagag cgggaacatt attttggaac aaggcgacct tgtaaaccga gcgttcgtgc
    14941 cggatcattt gccagcagat tttgacaaag aagtaatcag ccgggctctt gcgccgctaa
    15001 accatcttca aaacttgaaa aactcgatcc cagaatccgt tacttttctt gaaatgtacg
    15061 gtgtagagcg cgtcgaagag ttaaacattg ctggacgctg ggcgaaaaat gaaacgtata
    15121 agagccttgc tgtaccactt ggcttgcgcg gaaaagacga tatcgttcaa ctgaatttac
    15181 atgaaaaagc gcacgggccg catggtttgg tagccggaac aactggttct ggtaaatcag
    15241 aaatcattca gtcttacatt atctcacttg gcgtcaattt ccacccatat gaagtcgcgt
    15301 tcttgctgat tgactataag ggcggcggta tggcgaactt atttaaaaat atgccacatt
    15361 tactgggaac aattacaaac ttggacggcg cgcaatccat gcgtgcacta gcttccatca
    15421 aagccgaatt gcagaaaagg caacggttat ttggcgagca cgatgttaac cacatcaacc
    15481 aataccaaaa actatacaaa caaggaaaag cgaccgaacc aatgccgcat ttattcctta
    15541 tttcagatga gttcgccgag ttgaaatcag aacaaccaga attcatgaaa gaacttgttt
    15601 cgacagcacg tatcgggcgt tcactcggaa tccatttaat cctagcaacc caaaaaccaa
    15661 gtggcgtcgt ggatgaccaa atctggtcca actccaaatt caaactagcc ctcaaagtac
    15721 aaaacgccag cgattcaaac gaaattttga aaacaccaga cgcagcagaa atcacactac
    15781 caggccgttc gtacttgcaa gttggtaata acgaaattta cgaactgttc caaagtgctt
    15841 ggagtggtgc ggattacgtg ccagataagg aaagcacgga ttatattgat acgacgattt
    15901 atgcgattaa tgatttaggt cagtatgata ttttgacaga ggatttgagc ggattagata
    15961 agaaggatga tttgactaag ttgccgagtg aacttgatgc ggtgattgat catattcatg
    16021 cgtatacgga ggcttctggg attaaggcgt tgccgagacc ttggttgccg ccgctacctg
    16081 aacgaatttt cgcccaagac ttacatccag tcaattttga agaagcatgg aaagaaccga
    16141 aaaaaccact tcaagcaaca attggtttac tggatcaacc cgaattacaa gcacaagtcc
    16201 cattaacact cgatttaaca aaagatggac acgtggctgt attctcaagt ccagggtttg
    16261 ggaaatccac cttcttgcaa agtttagtga tggatttagc tcgtcaacat aatccagagc
    16321 aactgcatgt ttatttgttg gattttggga cgaatgggtt gctacctcta gtagatctgc
    16381 cacatattgc tgatacaatg atggtggatg aagttgaaaa aatacagaaa tttttacgaa
    16441 tctgcctaaa tgaaataaaa acaaggaaga agcttcttag ccaatatcgt gttgcaaata
    16501 tagagcagta tgaaagagca agtggaaaag aactacctaa tattattgtt gttctagata
    16561 attacgacgc tgtaaaagat gcaggcttag gggatgattt tgaaaaaatc attactcaaa
    16621 ttactcgtga aggtgcatcc attggaatgt ttatgattat tagcgcatca aggcatatga
    16681 gtttgagaac acaaatggct actaatatta aacaaatgat tgctttatat ctaattgata
    16741 aaaatgatat atcatcaact gttggtcgaa cggatacacc acttgaagag tatccaggaa
    16801 gagcgcttgt aaaattagaa acagttacaa catttcaaac gacgttacca tcgcacggag
    16861 aagaaacaat tcaacagatt gaaggtattc gaaatgaagc aaaattaatg agagaaggtt
    16921 ggcaaggaga acttccagag agcgtaccaa tgattccaga aaaaattaaa ctagctgatt
    16981 tttgtgaatg gatggaaact aaagaggtcg ttgcaaatgg aaatatacct atcggagttg
    17041 attttgaata cgtaaaacca gtaggcattg attacaagca aaccggagta ctaattattg
    17101 cagatgtaat tggacgaaac ttagtaagca taaataaaaa tgtagctaat tctcttgtgc
    17161 aaaatccaaa tatttctctc ttaattagcg acacagcgaa ttttgattta gtggaaatgt
    17221 ctactaaagc caatttatac agtaacaaca cagaggattt gaagcagaat atgaaaaaag
    17281 tactctctat ttatcaatcc agaactgaaa aagcagatga acttcgaaaa gcaggagata
    17341 atttaggcgt aactgccatg attcaaggat taaaagatat agttgctttc gtaggagatt
    17401 acgatatctt actaaaaact cttgatgaag aagaccaaaa agttctaata gatatgatta
    17461 acaatggaaa aacatatggt tgctatttaa ttttaagtgg ttcgattcaa gcatttaaag
    17521 gatatggtga tttgaataaa gctgttcaag ctcaaagaaa ctatatattc tttgatcgac
    17581 tatcgaattc aagtccattc tccttctcgt ttaatattta tagagaacaa gaattattac
    17641 ctgaggaagg ttatgtaata gcaggacaag agtggcaaaa aataaaaatt gcaaaatatg
    17701 aagaagaggt ttaaggaaaa tgctaacaaa agaaatatta cctattggaa gcgttgttta
    17761 tttaaaagaa agcctgaaga aagttatgat tacgagtaga ttaattacaa ttcagggaga
    17821 tgaagaaaaa gaattttatg attatggagg tgtagtttat ccagaaggga caaaggatga
    17881 caatattttg gcatttgatg cagaagatat aacagatgtg aagtttagag gttttgtaga
    17941 tgatgatgag gtagtcttgg tgaagagaat gagagaatgg cagaaagaag aatttggtgt
    18001 ttctccagaa gaggaggatg agatgcttga attatgatga acgtgtacga gttttaattg
    18061 agttgaaggt tgatttgtcc gggaaattag aaatgatgga aaatgaagaa gcgttattat
    18121 gtagacaaaa acatgatttt gcaagtgcct ggtcaaatgc aaaaacagag gatgcttaca
    18181 gaaaattaaa tgaagcagtt agaaagaaaa tcaaagaaac aacggaatat gcaagagaaa
    18241 ttgatgaaaa aattactgct cgtatcaaac gaattgaagc agcatataaa gcagaatatc
    18301 agagtaatag gagctataca tggcgtattg cagaaatcga tccaattaaa tttaaagaaa
    18361 agtataatga aagattaaat cagttaagct acttatcatg tgatggcagt gtaaaaacac
    18421 gtttaataaa agagtttcgg caaaataatt tcctgaaata ggaggatgaa atatggtaag
    18481 tccaatgcca gataaaacag taaaaatgga taaaggaagt attaatccta aattagataa
    18541 actaatttca agtctagaca attttgataa tatcaataag aaaatgggca ctatagtagg
    18601 tagccaggag attagtgggg aagcagcaga tgctttatct gagagcctat tagtgctagt
    18661 aagttatggg gaacaatata gtttagtaat tagaaaccta aaagaagtga tagtcgacta
    18721 ttgtaaaagt gtggaagaaa ttgataaaac agcagcaaac gcagtaagta aaggcgttta
    18781 aaaagaaaga ggttaaacta tgaaaagtag aaattggtta aaaggattgg gagtaacaat
    18841 gattgtcgtt actttaattt taacgggatg cggaaatgga gacgctgaaa agacagatac
    18901 aaaggaacag actaaaagtg ttgaagaaga aggaaaagaa gtaaagattg agagtaatga
    18961 agggaagcca cagcatgaac aacttataac agtgaagttg ccgccagaag cagagtattt
    19021 aaatgatgaa acgttagaag tgtatgagca agataaaaag aagtatgacc agacagagca
    19081 actaattact aataactcag ttacaattct attaggtgat ttttgctatt atgagccggc
    19141 atggagcagt cttacatgtt ctgcaattct tgtgaatgga actgacacaa atattgaaga
    19201 ccttagcttc aaagctgaaa taatgaataa gccaatgtca ggaaaaattt tttcagatga
    19261 caaagttcca gaacttacaa aagcaaaaac aggaaaattc cagccaaacg agggtatacc
    19321 aattatttta gttttctcag aagagaaccc gaaaaatgag gaaaatgcgg agcctcaaaa
    19381 aattaacatt aaagatataa aggttaagat aaaggatatt caatataaag cagttaaata
    19441 ggagggagaa agatggcaaa agaaattaag gtaaatccag attttttgaa gaaggttgaa
    19501 agcaatgtaa caaattacat tgatgcccag aaagaggttt ctgttgaatt actagcagtt
    19561 aggaccaact tagcaagtaa tttttcaggt attgcttgcg acgaaataaa aaattatata
    19621 acagaattaa tgaatgatct agaaaaagaa tttggtgtat ttattacaag gaatcatgaa
    19681 aaagttaagg cgttagggga aagttataaa gaacttgatg gtcagttggg acaaaccttt
    19741 aactatggaa tggagaggac taaatgagcg gaaaaataaa attcaatatc gccgaagctc
    19801 aaaatattag tcttgagctg aaaattgcag caggtaggta tacgcaagaa acagaagagc
    19861 tattaaaagt gctgaaaaat aatagtttat gtgataaaga ccaagatgtc gttgaacaga
    19921 gggggcgaat agagaagaat aaccaaagac ttatagaata tgagaaattt gtaaacacaa
    19981 atctcgctaa atctaattca gttatagaag aattgtttat gagtgtagaa gtattgtatg
    20041 cacagcaagt ttctgagttt agaaacccta attctgcggg ttataaagaa ttaatgggaa
    20101 atgtgaaagc gatatcatat caaaaaattt cacagatttc aggattggga gaaatgctta
    20161 catcgaaagg ttcggtggga gcaattaaag atatcagaga cacactactt ggaacattgg
    20221 tagatgatac ttacttgaaa ttaattgatg atacagttga atatcaagga gaaaataaaa
    20281 atataactga tttatatggg gataaaatat ctaaagtggg gtcaaggaga aaaaaattgg
    20341 acactccaac caaatacctt tcaacagcct acctcatctc agacacgcta aaaagtttta
    20401 acagttatgg aaatagcaaa gattcctctc gacttgcagg agatctaacc ggtatagcaa
    20461 taacaaaagg tgcggatttt gctgttggga aattagctac tacggcatta tctggttttg
    20521 gtgtaagtgg tgttaaaggc gctatcgcag gcgccattat ttccgttgct gcagataaaa
    20581 ttattgatcc gacggttgaa tatgttaaag agagcaaggt agaagcaaag agggatgact
    20641 gggaaacaaa aggtatatat aaaggctgga aaaaaattcg agatttaaaa ctagaatata
    20701 caatgggtaa ctatcaagca agttaacagt taaaaatata aga
//
LOCUS       DASDXX010000031        20119 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.031, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000031 DASDXX010000000
VERSION     DASDXX010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20119
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.031"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(302..1522)
                     /locus_tag="U0280_000900"
     CDS             complement(302..1522)
                     /locus_tag="U0280_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEM2270854.1"
                     /translation="MKKVTLIFGIYTFILGIIVGIIAALFLAMVHFATTFLWDYLPNQ
                     FDFSWYYPLLIGLIGSFFVGMVQLKFGDYPRSMHDNVAEAKKTGRMEYRKVLFPTILS
                     AWIILTFGASVGPEAALIGIVGGATTWIIDHLKLSMAHKEELVSLSVGAIISSIFHAP
                     FSGLAEEIDESSQAKKIPKNSKLVLSLLISFSALGSFLWLKSFLKMPASIFAIRLPDM
                     GWSWWFILLFIPMIILGWLFSVYFQQLQVYIAKAASVIKNKMVAAVIGGLSIGLFGII
                     SSFMLFSGEHQLIELTTTVQNYSIPFLLIIGLLKPVLVAICLATGWNGGAIFPAIFTS
                     TIMGYIATFWMDGSTGFLITIFVTASCTKIIGKPVLTASILLFIFPLQFFPFILLTAF
                     IVNRNWLVNFKKTA"
     gene            complement(1634..2107)
                     /locus_tag="U0280_000901"
     CDS             complement(1634..2107)
                     /locus_tag="U0280_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent PAP2 family protein"
                     /protein_id="HEM2270855.1"
                     /translation="MSIFTNTPLIASIIAIVFAQVVKVPIHILVYRKFNLGLMFSTGG
                     MPSSHSAAVTALMTTLAIEYGLDSPYFAIAVVFGIIVMFDATGVRRQAGEQAVVLNKL
                     VTDFQDFVEHAKGLAAPEQEEKTKHLKELLGHKPMEVFFGALTGIAIGFILEMFM"
     gene            2235..2606
                     /locus_tag="U0280_000902"
     CDS             2235..2606
                     /locus_tag="U0280_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEM2270856.1"
                     /translation="MGLQETIGIEIVSVEKGKAVVQLEVTEKVHQPFGYLHGGVSVVL
                     AEHAASIGAAKSIEPDEIVFGLEINANHLASKQEGLVTATAEAIHLGKSTQVWEIKIT
                     DETEKLICISRCTIAVKKKRK"
     gene            complement(2651..3244)
                     /locus_tag="U0280_000903"
     CDS             complement(2651..3244)
                     /locus_tag="U0280_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit G"
                     /protein_id="HEM2270857.1"
                     /translation="MNVIIEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISN
                     TFGVSLLLFATVGYFFHSGEGFNARVLLAVLFIFLTTPVASHLINRAAYDTGVPLAIR
                     IRDQLRSVKKDDIKKKKNLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQ
                     EREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK"
     gene            complement(3228..3515)
                     /locus_tag="U0280_000904"
     CDS             complement(3228..3515)
                     /locus_tag="U0280_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit F1"
                     /protein_id="HEM2270858.1"
                     /translation="MIIQIALSIGLLLYSISTFLYLYRILKGPTTSDKVVALDSIGMN
                     LVAIVALLSMFYDTHAFLDVILLIALLAFIGTVSFAKFIEKGKVIDRERDN"
     gene            complement(3512..3991)
                     /locus_tag="U0280_000905"
     CDS             complement(3512..3991)
                     /locus_tag="U0280_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit E"
                     /protein_id="HEM2270859.1"
                     /translation="MAFQLILNIILACLWMFLESSFSFATFIIGFIIGIFLLFFMRRF
                     LGSRFYLFRLFALVKLVFRFLHDLIVSTVHVSRIVLKKDMNIRPGIFRYDTTLETDWE
                     VTMLALLITLTPGTLSIDISDDYKAIYVHSLHVPNIEEEIATIRKSYEGAIMEVFHG"
     gene            complement(3998..5482)
                     /locus_tag="U0280_000906"
     CDS             complement(3998..5482)
                     /locus_tag="U0280_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit D"
                     /protein_id="HEM2270860.1"
                     /translation="MNNIILMPILIPFLGAITLMLLPKKVIIQRVFALIFSGILVVAT
                     LGLVFYIRENGITTVNIGNWAAPFGITMVGDMLAVLLTATTSIVLFCVILYSFYTIGK
                     PREKFLYYPAILFMIVGVNGSFLTGDIFNMFVFFEVMLMASYVLLVIGGTQVQLKATI
                     KYLLINVVGSGFFVVAIALLYSMIGTLNMADISQKITDLNGANTGMISVVAVLFLFVF
                     GLKAGLFPLYFWLPGSYFAPPIPVLALFGGLLTKVGVYAIIRTYTLFFSSLTDFVVPL
                     LGILAIVTIVLGVIGAISYYDMKTIVIYNIMIAIGVILFSVSIMTRESMTGAVFYLIH
                     DMIIKAALFLIVGIVMAITGYSSVKKFSGLMSVKPSLGWIFFIATLGLAGIPPLSGFI
                     GKLLIVEGAFSAGQIVGGIIILLSSLFVLMSLIKVFTKGFWGEKKGVFNLQIPYKKML
                     VPVVILLAISIGYGVFSNAIYPFIEQAVDPLVDPSVYIHAVIKE"
     gene            complement(5475..5822)
                     /locus_tag="U0280_000907"
     CDS             complement(5475..5822)
                     /locus_tag="U0280_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit C"
                     /protein_id="HEM2270861.1"
                     /translation="MELLMSILIGLIFAAAVYLILSKSLLRIIIGTAVLSHGVNLLVL
                     TMGGLKKGRVPILGTPGAGTYNDPLPQALILTAIVISFGVTAFFLVLAYRAYQELDSE
                     SVSKTRGHEADDE"
     gene            complement(5822..6247)
                     /locus_tag="U0280_000908"
     CDS             complement(5822..6247)
                     /locus_tag="U0280_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit B"
                     /protein_id="HEM2270862.1"
                     /translation="MMKTNDVLLRNVTKVVAFIIFLFSLHLFFAGHYNPGGGFVAGLT
                     TAGAITLTLLAYDTKTVASMLNINTIMLTGVGLVFALGTGMIGIFTGDPFLTHKFGHV
                     DLPILGDTALHTATLFDLGVYLVVVGVTLTIIQTIGESD"
     gene            complement(6231..8639)
                     /locus_tag="U0280_000909"
     CDS             complement(6231..8639)
                     /locus_tag="U0280_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit A"
                     /protein_id="HEM2270863.1"
                     /translation="MSFLHLAIVLPFIVALLIPLFYRWTKQVHTGWLVLPIPVILFIY
                     FLTFIPKTMDGATIVSMPWIPRLGINFTVVVDGLSLLFALLITGIGSLVTFYSIYYLG
                     KKKERLSNFYTFLFIFMTAMLGVVLSDNLIVLYLFWELTSISSFLLIGYWYHRERSRY
                     GARKSMMITVFGGLMMLGGFILLHIMSDSFSIREIISNADVISNNSLFIPAMILILLG
                     AFTKSAQVPFHIWLPDAMEAPTPVSAYLHSATMVKAGIYIVARFTPLFASSGVWFWTV
                     SLVGITTLFWGSLNATKKNDLKAILAYSTISQLGLIMALLGVGAASLHFDTLSDDIYV
                     MAIVAAVFHLFNHATFKGSLFMMVGIVDHETGTRDIRRLGGLMRIMPITATIAFIGTF
                     AMAGIPPFNGFLSKEMFFESMVNITQLQLFDASTWGVLLPVVAWVASVFTFVYSMIIF
                     FKTFTGKVKPYLLPKKPHEAPFGLLLPPIILSIFVVGIGLFPNLIAEPILEPAVRAIV
                     PGLSTDFSIHISLWHGFTPALLMTFGVVAVGIVLFLTHKYWKPWITTKVPKALRIGKT
                     YDNGMYYLEQGSYRMTMFIMTGWLRTYLNYMLSAFILMMASVMIFTQALDFNFSSMTK
                     VTVVDFVLAAVILVTLVGIVFSKSRITSIILLGAMGYTISIFFVISRAPDLALTQLII
                     ETISVVLYLLVFYHLPQFSNIEEKPKWLSMKTFLSIGVGVIITLVSLSAYNTTFYDSI
                     SKYYVDNAYVEAAGRNIVNVILVDFRGFDTMFETAVLSIAAIGIYAMIKLRLTKRGKN
                     DENE"
     gene            complement(8984..10195)
                     /locus_tag="U0280_000910"
     CDS             complement(8984..10195)
                     /locus_tag="U0280_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2270864.1"
                     /translation="MTTRTRNLYILMLANLLMSASMTMIMPFLSLYIETFGDYSNAYV
                     QRWAGYIFGVTFLIAFIFSPIWGRIGDKHGYKGILILTSVGLSICIFLMGFAHSVTYL
                     LILRIFMGVVTGFIGVSNAFIARQTPRNEAGKILGTLQLGGVTGMLFGPLIGGAMADL
                     FGFKDTFTITGIAMMVAALIVAFGVKEIRTEEQKEAAKVVYSRRAVLKQIFTLRVLFT
                     VMVITALIQIANFSVQPLLALYVGDMTQSDNIAFLSGLAFSATGFGNLVMTRKWGQLG
                     DKYGYEKILNILLIMAAVFVIPQAFATNLWVFIFFRFLFGIAIGGMVPCTTAYIRLAA
                     PGVMQGEMLGYNQSARFLGNVIGPILGGTLAGFTGIPSVFLFMSFMFLVAFFILLYAL
                     HSDRKRHVNVD"
     gene            10427..11011
                     /locus_tag="U0280_000911"
     CDS             10427..11011
                     /locus_tag="U0280_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM2270865.1"
                     /translation="MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVT
                     HSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAFNLRGALSM
                     ANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEIIEAYKQGGTPWLDGRHTVFGH
                     VIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK"
     gene            11093..11488
                     /locus_tag="U0280_000912"
     CDS             11093..11488
                     /locus_tag="U0280_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270866.1"
                     /translation="MEKSHPIKINNQLIYGRDKTWLESLHQNTNQLIITVEIDFEDES
                     TLQKMVFNGLIFYSSTELDTYEKSKWSSSWLQSQSNFEIIEQSNLINERVKIRSDYNI
                     QDFKHYRISTYDYIIDVIAKNYQLKEAHK"
     gene            complement(11530..12891)
                     /locus_tag="U0280_000913"
     CDS             complement(11530..12891)
                     /locus_tag="U0280_000913"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM2270867.1"
                     /translation="MKVIKFGGSSLASGIQLNKVFQLVAEDPDRKIVVVSAPGKRFKE
                     DTKVTDLLIDCAAKALLGEDTSELFESVIARYAGIALDTGMSDEIINQIRADLQATIS
                     SDKSDPDKFLDRMKASGEDNNAKLIAAYFKFKGLNANYINPKDAGLLVTDEHASAQVL
                     PESYDRLFALREREGIIVFPGFFGYTKDGEISTFSRSGSDITGAIVANGAQAELYENF
                     TDVDAVYAVNPAIVKNPKKVLELTYREMRELSYAGFSVFHDEALIPAFHAGIPVHIKN
                     TNNPDSCGTRVVHERENNNGPVVGIASDDGFCSIYISKYLMNREIGFGRKVLQILEDA
                     GLNYEHMPSGIDDLTIIIRENQFGEDTEQTIMSRLKEELNADQVIMQHGISLIMVVGE
                     TMRHNVGITSRASKALSDAKVNIEMINQGSSEVSIMFGVKEEQENTAVRALYNEFFSE
                     VFV"
     gene            13136..13450
                     /locus_tag="U0280_000914"
     CDS             13136..13450
                     /locus_tag="U0280_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2270868.1"
                     /translation="MKNIVLVCAAGMSTSLLVTKMRKAAEERGETCEIEAYSIAEVSN
                     LIDDADVVLLGPQVRYQKKTVDELAAGKIPVDVIDMAAYGTMNGEKVLGQALDLINGF
                     QK"
     gene            complement(13493..14173)
                     /locus_tag="U0280_000915"
     CDS             complement(13493..14173)
                     /locus_tag="U0280_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270869.1"
                     /translation="METLLSFDKVYKDYPSGPSIIHALKETNFEAKKGELIAIVGPSG
                     SGKSTLLSLAGALLTPTGGTISINGKSVGNLSSKEQTALRLEEIGFIFQAAHLVPYLH
                     VKDQISFIGKMAGKSAAELEKDTASLLSQLGISDRANFYPKDLSGGQKQRVAIARALI
                     NQPSVILADEPTASLDTERSREVVELIRNEVVQTSRTAIMVTHDERMLDLVNHVYRME
                     DGILTQES"
     gene            complement(14173..15276)
                     /locus_tag="U0280_000916"
     CDS             complement(14173..15276)
                     /locus_tag="U0280_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270870.1"
                     /translation="MFLGLRELVYSKLRYILVTGIMVLIMLLSLILSGLANGLAYDNA
                     SSVADNGVPYYVLSKDAQDKLSRSQFPESKLADVKKDANVKDAAVLGQSMQTLKRESD
                     DKKFSVALFGIQPDSFLAPKISDGANIQVTKPDEIVVDSSLKSDGIKIGDVLMDDILN
                     RELTVVGFTENQKYSHAPVVYINIATWQEINPVLYHQKIPQTSTIAIKTENPDKGVTL
                     SDKDLTTIDHKGFLNQIPGYSAEQMTLNMMIFFLIIIGGFILTAFFYVMTLQKTTQFG
                     ILKALGTKTSYLVKSIITQVVIISIISILISVGVTLILPSIMPAAMPFRLSPMTIALY
                     SGLFFLVALFGALLSLRRIAKVDALDAIRGGDE"
     gene            complement(15415..16581)
                     /locus_tag="U0280_000917"
     CDS             complement(15415..16581)
                     /locus_tag="U0280_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2270871.1"
                     /translation="MSQFDEVIPRIGTNSEKWDGAEELFGRKNIIPMWVADMDFRAPQ
                     PVLDAFQRQIDHGIFGYSTKSAALVEAIIDWNKEQHQFEIDPSALFFNGAVVPTISLA
                     IRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPLIYENRQYRMDFNDLEKRMKEE
                     KVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVMKNHKHVPMMV
                     AAPFYQDQIITLMAATKTFNLAAIKASYYIITNKDYQAKFAAEQKYATTNGLNVFGIV
                     GTEAAYRHGVPWLKELKEYIYSNYEYVKAALEKEVPEVGVTDLEATYLMWLDCRALPK
                     DEKTIYADLIEAGVGVQMGSGFGHSGKGFVRFNIACPKETLEKAVKLLIQGLKK"
     gene            16735..17088
                     /gene="yugI"
                     /locus_tag="U0280_000918"
     CDS             16735..17088
                     /gene="yugI"
                     /locus_tag="U0280_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein 13"
                     /protein_id="HEM2270872.1"
                     /translation="MSTFKVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFV
                     KDIHDFLEVGQEVKVKILDIDEEKNKISLSIRATEEAPKEQPTKKKQVSSSENDEGFN
                     TLRDKLEEWIKKADK"
     gene            17236..17643
                     /locus_tag="U0280_000919"
     CDS             17236..17643
                     /locus_tag="U0280_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2270873.1"
                     /translation="MKRSIHVQAFVYNEKKDEILVVRDRNLTWAFPGGHVETNQTMEE
                     ALASKVKEQTNIDIEIESILHCKERRATWEHVCTFVFRAKPVGNALLASNDDNVFRVK
                     WIPIPLADDLLAVDQLSLNELVRSEGVLYENYT"
     gene            17745..19097
                     /locus_tag="U0280_000920"
     CDS             17745..19097
                     /locus_tag="U0280_000920"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM2270874.1"
                     /translation="MTHIKFDYSKALRFFEERELDYLEPAVKAAHDSLHNGTGAGNDA
                     LGWINLPTDYDKEEFARIKKATEKIHSDSDVLIVIGIGGSYLGARAAIETLNHSFYNV
                     LEKGARKTPQVFFAGNSISSSYLHDLIEVVGDRDFSVNVISKSGTTTEPAIAFRVFKE
                     LLIKKYGEEGAKKRIYATTDKAKGALKTLADNEGYETFVVPDDVGGRFSVLTAVGLLP
                     IAVSGVDIDALMNGAAAASKDFDKPELKNNIAYQYAAARNVLYRKGKVTELLISYEPG
                     LQYFNEWWKQLFGESEGKDKKGIYPSSANFSTDLHSIGQYIQDGRRNLFETVIKVDKP
                     RHNLTINKEDVDLDGLNYLAGETVDFVNTKAFEGTLLAHTDGEVPNFVVEVPELDAYT
                     FGYLVYFFEKAVAISGYLNGVNPFDQPGVEAYKANMFALLGKPGFEDKKAELEKRLND
                     "
     gene            19202..19960
                     /locus_tag="U0280_000921"
     CDS             19202..19960
                     /locus_tag="U0280_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2270875.1"
                     /translation="MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLE
                     KDKKLKRTHGGVMIEEKVVSEPNWKKRSEVRYEEKQRIATLAATMVKDGDTIILDAGT
                     TTGHIATALKDRSKLTVITNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTL
                     QSIHVHKAFVTTPALDIDKGLMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYK
                     YAALDEISSIITGKEIDPVLKEQFEEKGMQIYTT"
BASE COUNT         6968 a         4200 c         3550 g         5401 t
ORIGIN      
        1 acattaataa acaataagaa cctttataat gagttaatta agtatgactt gtccgcagaa
       61 gaaagaatag tctatgccct ccagtaccta tgtgacaaat tagaaattga aagtgaaaat
      121 ggctaccaac aaatacctaa atatattaat aagataaaaa tggcgaaata cggcaaaata
      181 tctcgcaaac aactaaacga aaaataatac ttctcctcga taaggaagta ttaaaagaaa
      241 aaaaaggaag attctatata aaaaaatcag cataaaaaaa ctaaggattt ctccttagtt
      301 tttatgctgt ttttttgaag ttaactaacc aatttctatt cactataaat gcagttaata
      361 aaataaatgg aaagaattga agtgggaata taaataataa aatagaggca gttagaactg
      421 gttttcctat gatttttgta caacttgcag taacaaaaat agtgattaag aaaccagtcg
      481 atccatccat ccaaaatgtt gctatgtaac ccataatcgt actagtgaaa atcgccggga
      541 aaattgcacc gccattccag ccagttgcta aacaaatagc gaccaaaaca ggttttaaca
      601 agccgataat aagtaaaaag ggaatcgaat aattttggac agttgttgtc aattcaatca
      661 gctgatgctc accagaaaat aacatgaagg aagaaattat cccaaataaa ccaatgctca
      721 aaccgccaat aaccgccgcg accattttat ttttaatgac agaagctgcc ttcgcgatat
      781 agacttgcaa ttgctggaaa taaacactaa agagccatcc aagaataatc atagggataa
      841 aaagtaaaat aaaccaccaa gaccaaccca tgtcaggtag ccgaatcgca aaaatactcg
      901 ctggcatttt taaaaaggat ttcagccaaa ggaaagatcc gagcgcgcta aaagaaataa
      961 gaagcgataa cactaattta gagtttttgg gaattttctt cgcttgacta ctttcatcaa
     1021 tttcctcggc tagtccgcta aacggagcgt ggaaaatact ggaaataatc gcgccgacac
     1081 tcaaactaac aagttcttcc ttatgcgcca tagataattt taaatggtca ataatccaag
     1141 tcgtggcacc accaacaata ccaatcaaag cagcttccgg accaacgctc gccccaaatg
     1201 ttaaaataat ccaagcgcta agtatcgtag gaaacagaac tttgcgatat tccatccgtc
     1261 ctgttttctt cgcctcagca acattgtcat gcatcgaccg cggatagtca ccaaatttca
     1321 gctgaaccat tcctacaaaa aaactcccaa tcaaaccgat tagtagagga taataccatg
     1381 aaaaatcaaa ctgattagga agataatccc ataaaaaagt cgtggcaaaa tgaaccattg
     1441 ctaaaaataa agcggcaatt attcccacta tgattccgag gataaaagta taaatgccaa
     1501 aaataagtgt tacctttttc actgaaactc gccccttttg taaaatctgt tgatatcatg
     1561 attttccctc taacataaag ctgtaaacta acgacaaaca aaaaaagttg actacaagga
     1621 gtcaactttt catttacata aacatttcta aaatgaatcc aatcgcaatc ccggtaagtg
     1681 ctccgaagaa aacttccatc ggtttatggc caagtaattc ttttaaatgc ttcgtttttt
     1741 cttcttgttc aggtgccgcg agcccttttg catgttccac gaagtcttgg aaatccgtta
     1801 ctaatttgtt taaaacaact gcttgttcac cggcttgtct tctaacgcca gtcgcatcga
     1861 acatcacgat aataccaaat acaacagcaa tcgcgaaata aggtgaatcg agcccgtatt
     1921 caattgcgag tgttgtcatt agcgcagtaa ccgcagccga gtgagagcta ggcataccac
     1981 cagtggaaaa cattagtccg aggttaaact ttcggtatac taaaatatga atcggaactt
     2041 tgaccacttg ggcaaacaca atcgcaataa tagatgcaat taatggtgta ttcgtaaata
     2101 tcgacatcaa atctctcctg tcaaaaagtc tattcttatt ttaccacaat gagcttatta
     2161 aaaacctttt ctagagtttt tctaccaact cttatataat aaagtataaa tcaaattcgg
     2221 aaagaaggga acatatggga cttcaagaaa ctattggcat tgaaattgtt tcagtagaaa
     2281 aaggaaaagc cgttgttcaa ttagaagtga cagaaaaagt ccatcaaccg tttggctatt
     2341 tgcatggagg ggtttctgtt gttttagcgg aacatgcagc aagtattggt gctgctaaat
     2401 caatcgaacc cgatgaaatc gtctttggtt tagaaattaa tgccaatcac ttggcatcaa
     2461 aacaagaagg attagtaaca gcgactgcag aagcaatcca ccttggcaaa agtacccaag
     2521 tatgggaaat taaaatcact gacgaaacgg aaaaactaat ttgtattagc agatgtacca
     2581 tagcagtcaa aaagaaacga aaataaaaag catggcagag gtcaattgat gaactcgcgc
     2641 catgcttttt ttatttctcc gttttatcat cgtctgattc agtttcactt tcatcctgct
     2701 cgatgatttc atgctcggaa tcatccgact gttcttcaat cgtttgttcc tcgcgttccc
     2761 gttcttgttc ttcttgatct tcacgctcat cgattttttc ttcgcgtcgt tcccattcca
     2821 ttcgttcttc caattcttcc cgttcttgtc gtgctttttc aatttgttct tgacggataa
     2881 taagattttt ctttttctta atatcgtctt ttttcaccga acgcaattgg tcacgaattc
     2941 gaatagctag cggaacaccg gtatcataag cagcccggtt aataaggtga gaagccactg
     3001 gtgtagttaa gaaaataaac aatacggcca gaagtactcg agcattaaaa ccttcgcctg
     3061 agtggaaaaa gtaaccaacc gttgcaaaca gaagtaagct aacgccaaat gtattactaa
     3121 tcccggcagc atgcgttcta gtgtacacgt caggcaatct gataaccccg attgcggcaa
     3181 gaatactaag caaaccgcca attaaaatca taatagaaat aataatctca attatcacgt
     3241 tcacgatcaa tcaccttccc tttctcaata aatttggcaa aggaaaccgt tccgataaat
     3301 gcaagaagcg caataagtaa aataacatcc aaaaaggcat gcgtatcata aaacatcgaa
     3361 agtagcgcta caatggccac taagttcatt ccaatagaat ccagcgccac cactttgtca
     3421 gaagtagttg gtccttttaa aatacggtaa agatataaga aagttgaaat cgaatagaga
     3481 agtaaaccaa tggataaagc gatttgaata atcatccgtg gaacacctcc ataatcgcgc
     3541 cttcataaga cttacgaatt gttgcaattt cttcttcaat attagggacg tgaagcgagt
     3601 ggacatagat tgctttataa tcatccgaaa tatcaatcga aagtgtcccg ggcgttaacg
     3661 taatcagtag tgcgagcatc gtcacttccc agtctgtctc aagcgtcgta tcatatctga
     3721 aaatccccgg tcgaatgttc atgtctttct ttaaaacaat ccgacttaca tgaactgtag
     3781 aaacaattaa atcatgcaaa aagcggaaaa ccagtttgac aagggcgaat aaccggaaaa
     3841 ggtaaaatct tgatccaagg aaacgtcgca taaagaatag caagaaaatc ccgatgataa
     3901 agccaatgat aaatgttgca aaactaaatg atgactcaag aaacatccac aaacaagcaa
     3961 gtattatatt aagaataagt tgaaaagcca tcttttatca ctcctttatc accgcatgga
     4021 tataaacaga agggtcaaca agagggtcaa ccgcctgttc aataaacgga taaattgcat
     4081 tactaaacac accataacca atcgaaatcg caagtagaat aactactggc acaagcattt
     4141 ttttatacgg aatttgtaaa ttgaatacgc cttttttctc gccccagaag ccttttgtaa
     4201 agactttgat taaagacata aggacgaata agctggataa taagatgatg attccgccaa
     4261 ctatttgacc agcagagaaa gcaccttcca caatcaataa ttttccaatg aagccgctaa
     4321 gaggtggaat tcctgcaagg ccaagagtag caatgaagaa aatccaaccg agcgaaggct
     4381 tcacgctcat caacccactg aattttttta cactagaata accagtaatc gccatcacaa
     4441 tcccgacaat aaggaacagc gcggctttaa taatcatatc gtgaatcaag taaaagacag
     4501 caccagtcat tgattcgcgt gtcataatcg aaacgctaaa cagaataaca ccaatcgcaa
     4561 tcataatatt ataaatcaca atcgttttca tatcatagta actaattgcc ccaataaccc
     4621 caagaacaat cgtcacaatc gcgagaattc caagtagcgg aacaacaaaa tctgttaacg
     4681 aactgaaaaa tagtgtgtat gtccggataa ttgcataaac cccaactttt gtcagaagtc
     4741 caccgaacaa agcaagcacc ggaattggtg gagcaaagta agatcctggt agccagaagt
     4801 aaagcgggaa tagtcctgct tttagtccga atacaaacaa gaacagaacc gcgacaacgc
     4861 taatcattcc tgtatttgca ccatttaagt ccgtgatttt ttgcgaaata tccgccatgt
     4921 tgagcgttcc aatcatcgaa taaagtagcg caattgctac aacgaaaaat ccggaaccaa
     4981 ccacattaat caacaagtat ttaatcgtcg ctttgagctg aacttgagtc ccaccaatga
     5041 caagtagtac ataagacgcc atcaacataa cttcaaagaa tacgaacata ttaaaaatat
     5101 cgccagttaa aaacgaacca ttaaccccaa caatcataaa gagaatcgct ggataataaa
     5161 gaaatttctc tcgtggtttc ccaatcgtat aaaaagaata aagaatcacg cagaataaaa
     5221 caatactcgt cgttgccgta agcaagacag caagcatatc gccaaccatc gtaatcccaa
     5281 aaggagccgc ccagttacca atattcacag ttgtaatccc gttttctcga atataaaata
     5341 caagtccaag tgtcgctaca accaaaatac cactaaaaat aagggcgaat acccgttgaa
     5401 tgattacttt tttcggaagc aacattaacg taattgctcc aaggaaaggt atcaaaatcg
     5461 gcattaaaat tatattattc atcatcggct tcatgtcctc tcgtcttgga tacactctcg
     5521 ctatcaagct cctgatacgc tctataagca agaacaagga aaaaggcagt tacaccaaag
     5581 cttataacaa tcgcagtcaa aataagtgct tgtggaaggg gatcattata cgttcccgct
     5641 cccggtgtac caagaattgg cacgcgacct tttttcagtc cacccatcgt aagtacaagc
     5701 aaattgacac cgtggcttag gacagccgtt ccaataataa tccgtagcaa acttttagag
     5761 agaattaagt agacagcagc tgcaaaaatc aagccgatta atatagacat taatagttcc
     5821 atcagtcact ctccccaatc gtttgaatta tcgtaagtgt tacaccgaca acaactaagt
     5881 aaaccccaag gtcaaacaaa gtcgccgtgt gtaacgcagt atctcctaaa atgggcaaat
     5941 caacatgacc aaatttatgc gttaagaaag gatctcctgt aaaaatccca atcatcccag
     6001 taccaagggc gaatacaagc ccaaccccgg taagcataat cgtattgata ttaagcatac
     6061 tagccaccgt ttttgtatca taagcaagta gtgttaatgt aatagcacca gccgttgtaa
     6121 gcccggccac aaacccgcca ccaggattat aatgtcctgc aaagaataaa tggagtgaga
     6181 ataagaaaat aatgaaagca actactttcg ttacatttct cagtagaaca tcattcgttt
     6241 tcatcattct tacctcgttt cgtcagtcgt aatttaatca tcgcgtaaat accaatcgcc
     6301 gcaatcgaaa gcacagctgt ctcaaacatc gtatcaaaac cacggaagtc aactaagata
     6361 acatttacaa tatttcgtcc cgccgcttcc acataagcat tgtccacata gtacttcgaa
     6421 atcgaatcat aaaatgtcgt attatacgct gaaagagaga caagggtaat aattacacca
     6481 accccgatac tcaaaaatgt cttcattgat aaccatttcg gcttttcctc aatattacta
     6541 aactgaggaa gatgataaaa cacaagtaga taaagcacaa cggaaatagt ttcaataata
     6601 agctgtgtta aagcaagatc tggtgctcta gagataacaa agaaaatact aatcgtgtat
     6661 cccattgctc caagtaaaat aatcgaagta atccgcgatt tggaaaagac aatcccaacc
     6721 aacgtcacta aaatcactgc cgctaaaaca aaatcaacaa ctgtcacttt cgtcatactt
     6781 gagaaattga aatcaagtgc ttgtgtgaaa atcatgaccg aagccatcat taaaataaaa
     6841 gccgataaca tgtaattcaa gtaagtccga agccaaccag tcataataaa cattgtcata
     6901 cgatacgagc cttgttctaa ataatacatc ccattatcat acgttttccc aattcgaagt
     6961 gcttttggaa ccttagtcgt aatccaaggt ttccagtatt tatgtgtaag aaacaagaca
     7021 atccccactg caacaacacc gaacgtcatt aacagagcag gcgtaaagcc gtgccacaaa
     7081 ctaatatgaa tcgagaaatc cgtagaaagc ccaggaacaa ttgctcttac agcaggctcc
     7141 aaaatcggct ccgcaattaa attagggaag agaccaatac caaccacgaa aatcgataaa
     7201 ataatcggtg gtaaaagtag tccgaatggc gcttcatgcg gttttttcgg aagtaagtac
     7261 ggtttcactt ttccagtaaa tgttttaaag aaaataatca tactataaac aaacgtaaac
     7321 acactagcaa cccaagctac aacagggagc agaacgcccc aagtacttgc atcaaacaat
     7381 tgcaattgcg taatatttac catgctttca aaaaacatct ctttacttag aaatccatta
     7441 aacggtggaa taccggccat tgcgaaagtt ccgataaacg caatcgtcgc cgtaatcggc
     7501 ataattcgca ttaagccacc aagtcgccta atatcccgcg tccctgtttc atgatcgaca
     7561 atcccaacca tcataaacaa actaccttta aatgtcgcgt gattaaatag atggaacaca
     7621 gctgcgacaa tcgccatcac ataaatatca tcactaagcg tgtcaaagtg aagggaggca
     7681 gcaccgacac caagaagcgc cataatgaga ccaagctgac ttatcgtcga ataagccaaa
     7741 attgctttta aatcattttt cttcgtggca ttaagtgaac cccagaaaag ggtcgtaatc
     7801 ccaacgagtg ataccgtcca aaaccataca cccgaacttg caaatagtgg cgtgaaccga
     7861 gcgacaatat aaatcccagc ttttaccatc gtagcagagt ggaggtaggc actgaccgga
     7921 gtaggagctt ccatcgcatc tggcaaccaa atatggaatg gaacttgcgc agatttcgta
     7981 aatgccccaa gcaagataag aatcatcgca ggaatgaata aactattatt actaattaca
     8041 tccgcgttac taataatctc ccgaatggaa aaagaatcgc tcataatatg aagcaaaata
     8101 aatccgccaa gcatcatcag tccgccgaag actgtaatca tcatcgattt acgagccccg
     8161 taccgtgaac gctcacgatg ataccaatac ccaatcaata agaacgaact aatggaagta
     8221 agctcccaga aaagatacaa cacaatcaag ttatcactca agacaacccc gagcattgcc
     8281 gtcataaaaa taaataaaaa tgtatagaaa ttgctaagtc gttctttctt tttccctaaa
     8341 taataaatag agtaaaaggt aacgagtgaa ccaatccccg taataagtag cgcaaacagc
     8401 aaactaagcc catctactac taccgtaaaa ttaatcccaa gtcgcggaat ccaaggcatt
     8461 gaaacaatcg ttgccccgtc catcgttttt gggataaatg ttaagaagta aataaacaaa
     8521 atcactggaa ttggaagtac taaccagcca gtatgaactt gtttggtcca ccggtaaaaa
     8581 agtggaatta gcagtgccac aataaatggc agaacaattg ctagatgaag aaatgacaaa
     8641 atcggctcct cctcgaagaa tttttatacg gaaactcatc ctggaaatgt gaaaataaaa
     8701 acaggaaatc attatttttt aagcaagtac ttacatttaa tgaaacatag ttataactaa
     8761 aattttagaa aaccgtgcta actcatcaaa tttcaacaac tttactattc acgaagtacc
     8821 caaataaacg ccgtactttt tatatttttt attataacat acttttttat ctgaaaaaaa
     8881 ggcaggaaac ttaactttat aaatcaattt accgaaattt aaaaaacaat ttaataggaa
     8941 gaacaaaaaa acaaacctaa gaaaaaactt aggtttgtca aattcaatcc acgttcacat
     9001 gccgtttccg gtcggaatga agggcataaa gcaaaatgaa aaatgccacg aggaacataa
     9061 aactcataaa taagaacaca ctcggaattc ctgtgaaacc agcgagcgtc ccaccgagga
     9121 ttggtccaat aacatttcct aaaaagcgag cactttgatt atagccaagc atttcgcctt
     9181 gcataacacc aggcgccgca agccgaatat aagctgtcgt acatggcacc ataccaccaa
     9241 tcgcaatccc gaataaaaag cggaagaaga taaacaccca aagattcgtc gcgaatgcct
     9301 gtggaataac aaaaacagcc gccataatca acaatatatt tagtattttc tcatacccat
     9361 atttgtctcc aagctgtccc cattttcgcg tcatcaccaa gttcccgaat cccgtcgcag
     9421 aaaacgccag cccggacaag aaagcaatat tgtctgattg cgtcatatct cctacataaa
     9481 gcgcaagcaa cggttgaaca ctaaagttcg caatttggat aagtgctgta ataaccatca
     9541 ccgtgaatag aactcgtagc gtaaaaattt gttttaaaac tgcacgacga gaataaacga
     9601 ctttggcagc ttctttttgt tcttctgtac gaatttcctt gacaccaaaa gcgacaatta
     9661 aagccgcaac catcatcgca attccggtaa ttgtaaaggt atctttaaag ccaaataaat
     9721 ccgccatcgc gccgccaatc aagggaccaa acagcatccc agtcacgcct ccgagttgca
     9781 aagtaccgag aatttttcca gcttcattac gaggagtttg ccgtgcaata aaggcattac
     9841 taacgccaat aaagccagtc acaaccccca tgaaaattcg taaaatcagt aagtaagtga
     9901 cagaatgcgc aaatcccatc agaaaaatac aaatcgataa accaactgaa gtcagaatca
     9961 aaatcccttt ataaccgtgc ttatcaccaa tacgtcccca aatcggcgaa aagataaagg
    10021 caattaaaaa tgttacgcca aaaatataac cggcccacct ttgcacgtaa gcattgctat
    10081 aatcaccaaa tgtttcaatg taaagagata aaaaaggcat aatcattgtc atactggctg
    10141 acatcaacag gtttgccagc attaagatgt acaaattccg tgttcgagtt gtcataaaag
    10201 aatcatctct attcgtatta ttgttaaaac tgtccttttc attatagaat aaaagatagc
    10261 gaatgaaaaa taaagtgaag gatgtgcatt tttggttaaa aaaattgtca tttgggtttc
    10321 agctgttata ctagtactgt atctgattgc tgtcgttgtt aatttgctta ttatttggct
    10381 acgttagtaa acaataaatt taaacaaaag aaggagtttt tacaatatga cttacccaca
    10441 attatcaaaa gaagtggcac ctaacgaaat tgaagcagaa atgattacaa accgaggaac
    10501 tatccgcatc aaattgttcc ctgaaattgc accaaaaaca gtagaaaact ttgttacaca
    10561 ttccaaaaac ggctactatg atggccttat tttccaccgt gttattcctg aattcatgat
    10621 ccaaggtggc gacccagacg gccgtggtac tggtggcgaa agtatttggg gcgaatcttt
    10681 tgaagatgaa ttctctacag aagctttcaa tttacgcgga gctttatcca tggcaaacgc
    10741 tggtccaaac acaaacggca gtcaattctt catcgttcaa aaaccagata tgcctgctga
    10801 catgcttggt caaatggaac aagctggctt cccagtagaa attatcgaag cttacaaaca
    10861 aggcggaaca ccatggttag acggccgcca cacagttttc ggtcacgtaa tcgaaggcat
    10921 ggacgtagta gacgaaatcg ccaacctacc aactggcatg caagacaaac cagtgaatga
    10981 tgttgtgatt gagaagatta atattaaata actatactta gagcactttc atagaaagtg
    11041 ctcttttcga gtgaactttt aatagtaatt tcagatagga gttgagaaat ctgtggaaaa
    11101 atcccaccca ataaaaatca acaaccaact aatttacggc agagacaaaa catggcttga
    11161 aagcttacac caaaacacca accaacttat aataacggtt gaaattgatt ttgaagatga
    11221 aagcacgctc caaaaaatgg tttttaacgg acttattttc tattcatcca ccgaactcga
    11281 cacctacgaa aaaagtaaat ggagttctag ttggttacaa agccaaagca atttcgaaat
    11341 aatcgagcag tcaaatttaa taaacgagcg agtgaaaata agaagtgact acaacatcca
    11401 agatttcaag cattaccgga ttagtacgta tgactacatt attgatgtaa tagcaaaaaa
    11461 ctatcaatta aaggaagctc ataaataaaa caagtttctc gtcagctaag atgagaaact
    11521 tgttttattt taaacgaata cttctgaaaa gaattcatta tatagtgcgc gaaccgcagt
    11581 attttcctgc tcttccttca cgccaaacat tatgctcacc tcagaagaac cttgattaat
    11641 catttcaata tttactttcg catcggataa agcttttgaa gcacgagacg taatcccgac
    11701 attatggcgc atggtctcac caacaaccat aatcagcgaa atcccgtgtt gcataatcac
    11761 ttgatctgcg ttcaattctt ctttcaaacg agacataatt gtctgctcgg tatcttcgcc
    11821 aaactgattt tcgcgaataa taatcgttaa atcatcaatc ccagacggca tatgttcata
    11881 gttcaaccca gcatcttcca gaatttgcaa cactttccgt ccgaagccga tctctcggtt
    11941 catcaaatat ttactaatat aaatgctaca aaagccgtca tcactagcaa ttccaacgac
    12001 tggaccattg ttattttcgc gttcatgaac gacacgcgta ccacaagaat caggattgtt
    12061 cgtattttta atatgcaccg gaatacctgc atggaaagcc ggaattaaag cttcatcatg
    12121 aaaaacagag aagccggcat atgaaagttc acgcatttcc cggtaagtta gttcaagaac
    12181 tttcttcgga tttttcacga tagcgggatt gactgcgtag actgcatcca catccgtaaa
    12241 gttctcgtat aactcggctt gggcgccgtt tgccacaatc gctccagtaa tatcagagcc
    12301 acttctagaa aacgtgctaa tttcgccgtc tttcgtataa ccgaaaaatc ctgggaaaac
    12361 aataatgcct tctctttctc gaagtgcaaa caaacgatca taggattctg gtaaaacttg
    12421 cgcactagca tgttcatctg tcacaagtaa accggcgtct tttggattaa tataattggc
    12481 gtttaagcct ttaaatttaa agtaagcggc gattaatttt gcgttattat cttcgccact
    12541 agctttcatt cgatctaaaa atttatcagg atcgcttttg tccgatgaga tagttgcttg
    12601 taaatctgcg cgaatttgat tgataatttc gtcgctcatc cctgtatcta gcgctatccc
    12661 tgcatatctt gcaatgacag attcaaacaa ttcacttgta tcttccccga gaagtgcctt
    12721 tgccgcgcaa tcaataagta ggtcagtcac ttttgtatct tccttgaaac gtttacctgg
    12781 tgcagaaaca acaacgattt tcctatcagg atcctccgct acaagttgga aaaccttatt
    12841 taattggatc cccgatgcta aagagcttcc gccaaattta attactttca tgcaacacac
    12901 tcctgatctg aattttttag cttccgaaag cgttgttttt ggatgatgcg aaattttctg
    12961 acctttcgga taaagttatt gtctattatc gctctttttc cgtgaaatcg caatgttttt
    13021 tcgtgttttt aattattttc tctcgactcc agtagtttac ttgtttaaaa agctaaaggt
    13081 agttataata agagtgtaca aaaaaagcag ccttaatctg aaaggaaaga ttacgatgaa
    13141 aaatattgtt ttagtatgtg cggcagggat gtcaacaagc cttttagtaa caaaaatgcg
    13201 taaagcagca gaagaacgcg gagaaacttg tgaaattgaa gcgtactcca ttgctgaagt
    13261 aagtaactta attgacgatg cagatgttgt acttttagga ccacaagtgc gttaccagaa
    13321 aaaaacagtt gatgaactag ctgctgggaa aattccagta gatgtaatcg acatggcagc
    13381 ttacggtacg atgaacggtg aaaaagtact aggtcaagca ttagacttaa tcaacggttt
    13441 ccaaaaataa acaataaaaa aacctgtgtg gcacttaagc cacgcaggtt ttttagcttt
    13501 cttgggtaag tattccgtct tccatacgat acacatggtt gactaaatct agcatacgct
    13561 catcatgtgt taccatgatt gctgttcggc ttgtttgcac aacttcattc cgtataagct
    13621 cgacaacttc acgacttctt tcagtatcaa gactcgcagt tggttcgtcg gctaaaataa
    13681 cggaaggttg gttgataaga gcacgagcaa tagcgacacg ttgcttttga ccgccagata
    13741 aatcttttgg atagaaattt gcgcgatcac taatgccaag ttggcttaga agtgaagctg
    13801 tatctttttc aagctccgcc gcacttttcc cagccatttt tccaataaag ctgatttgat
    13861 cttttacgtg taaataagga actaagtgag ctgcttggaa aataaagcca atttcttcta
    13921 aacgaagagc agtttgttct ttggaagata aattcccgac tgattttccg ttaatagaaa
    13981 tcgttccgcc agtcggtgtt aatagcgctc cggcaagaga aagcagtgta cttttaccag
    14041 aaccactcgg accaacaatc gcgattagtt cacctttttt agcttcaaag tttgtttcct
    14101 tcagtgcatg aataattgaa ggaccggacg ggtagtcttt atacacttta tcaaaagata
    14161 gtagagtttc cattattcat cacctcctcg aatggcatct aacgcatcta ctttagcaat
    14221 tcgtctaagt gatagaaggg cgccgaatag agcaactaag aagaacaaac cactataaag
    14281 cgcaatcgtc atcggactta atctaaatgg catcgctgct ggcatgatac ttggtaaaat
    14341 cagcgttaca ccgacactaa ttaaaatact aataatcgaa ataatcacca cttgagtaat
    14401 aatgctctta actaagtaac ttgttttcgt tccaagtgct ttcaaaatac caaattgcgt
    14461 tgttttttga agcgtcataa catagaagaa tgcggttaaa ataaatccgc caataatgat
    14521 taagaagaaa atcatcatat taagcgtcat ttgttccgcg gaataacctg gaatttgatt
    14581 taagaaacct ttatgatcaa tcgttgttaa atctttatcc gaaagggtta cgcctttatc
    14641 aggattttct gttttaatcg caatagtact tgtttgcggg attttttggt gatataaaac
    14701 aggattgatt tcttgccaag tcgcgatatt aatataaaca acgggagcat ggctatattt
    14761 ttgattttcc gtaaagccga caaccgttaa ttctctattc aaaatatcat ccatcaaaac
    14821 atcgccaatt ttgattccgt ctgatttcaa ggaagaatca acgacgattt cgtcaggttt
    14881 tgtcacttgt atgttagctc catcagaaat ttttggagcg agaaagctat ctggttgaat
    14941 accgaaaagt gcgacgctaa actttttatc gtcactttcc cgttttaacg tttgcataga
    15001 ttgaccgaga accgcagcat cttttacatt cgcatctttt ttcacatcag cgagtttgga
    15061 ttctgggaac tgagatcgag ataatttgtc ttgggcgtct ttgctgagaa cataatatgg
    15121 aaccccgtta tctgctacag atgaagcatt atcgtaagcc agcccgtttg ccaaccctga
    15181 taaaataagt gatagtaaca taattaagac catgatgcct gttactaaaa tatagcgcaa
    15241 cttagaataa actaattcac gaagccctaa aaacatcgat tataccaact cctttaaatt
    15301 tatgtaaacg gaaaatgaac actatttcac tttccaaaga atagtatacc aaagctatat
    15361 tcaatttcct aaagaaagaa actaagtgtt tgctacttag tttctcaaaa taagctattt
    15421 ttttaagcct tgaatcagaa gtttcacagc tttttctaaa gtttcttttg gacaggcgat
    15481 gttaaaacgg acaaagcctt tcccggaatg tccaaatcca gaacccattt gaacaccaac
    15541 accagcttcg attaaatcag cataaatcgt tttttcgtct tttggaagag cgcgacaatc
    15601 aagccacatc aagtaggttg cttctaagtc ggtcacacca acttcgggta cttctttttc
    15661 gagtgctgct ttgacatatt catagttgct ataaatatat tctttcaact cttttagcca
    15721 aggcacgccg tggcgatacg ctgcttctgt accaacaatc ccaaagacat tgagcccatt
    15781 agttgtggcg tacttttgct ccgcagcgaa tttggcctga taatctttat tcgtaataat
    15841 atagtaggaa gctttaatcg ccgccaagtt aaatgttttc gtagccgcca ttaaagtaat
    15901 aatttgatct tgataaaacg gtgctgcgac catcattggc acatgtttat gatttttcat
    15961 cactaagtca gcatgaattt catccgaaac aatcggaatt tggtatttct cacatagttt
    16021 cgctaattcc acaagttctt ccttggtaaa acaacgacca ccaggatttt gcggattaca
    16081 tagaaggaat aattttacct tttcttcttt catccgtttt tccaaatcat taaaatccat
    16141 tcgatattga cggttctcat atataagtgg cgacataacc acttttctct cagtggcttt
    16201 cgttacattg aaaaatggtg ggtaaatcgg cgaaaccatt agaactgcat cgccttcatt
    16261 tgtgagagag cgaatcgcta acgaaattgt cggaacaacc gctccattaa aaaataacgc
    16321 gctcggatcg atttcaaact gatgctgctc tttgttccaa tcgataatag cttcgacaag
    16381 tgccgctgac ttggtcgaat aaccaaaaat cccatgatcg atttgacgct gaaatgcatc
    16441 aagtacaggc tgcggcgcac ggaaatccat atccgctacc cacatcggaa taatattttt
    16501 tctgccaaat aattcttctg ccccatccca cttctctgaa ttagttccaa tacgcggaat
    16561 gacttcatca aattgactca aatatgtcac gctccttctc tttcattcgc ctcaattata
    16621 gcataaattc caccctaaaa gctcaccgga gaaggattta gaataattgt taaagtttcg
    16681 cctaagtgtt ataatttata aaatattgta aggttgaaag taggtggaat gaggatgagt
    16741 acattcaaag taggagatgt agtttctggg aaagtcgcag gaattcaaag ctacggagca
    16801 tttgtagcgc tagataattc gacacaaggc ttagttcata tttcagaaat tacgcatggt
    16861 tttgtcaaag atatccatga ttttttagaa gttggccaag aagtcaaagt caaaattctg
    16921 gatattgacg aagaaaaaaa taaaatcagt ctttctatta gagcgacaga ggaagcacca
    16981 aaagaacaac caactaaaaa gaaacaagtt tcatctagcg aaaacgacga aggttttaac
    17041 actttacgcg ataaactaga agaatggatt aaaaaagcag acaaataaaa gtcccaatca
    17101 gcttggtaat atacccattt tgggataaat tgctaagctg gtaaatttaa ttgactaaaa
    17161 ttttagaaaa agggaatagt tagtagtaat tttctattta ttcaatatta taaaatagtc
    17221 aaaaggggga tttacgtgaa aagatctatt catgtgcagg catttgtata taacgaaaag
    17281 aaagacgaga tactagtggt gagagatcgc aatttgacat gggcatttcc agggggacat
    17341 gtggaaacaa accaaacaat ggaagaagca cttgcaagca aagtgaaaga gcagacaaat
    17401 atcgatatag aaatagagtc tatcctacac tgcaaagagc gccgtgctac atgggagcat
    17461 gtttgtacat tcgtttttcg agcaaaacct gttggtaatg cacttcttgc ttccaatgat
    17521 gacaatgtgt ttcgagtgaa gtggatacct atcccgctcg cagatgattt attagctgta
    17581 gaccaattat cattaaatga actagtaaga agcgaaggcg tcttgtatga aaactatacc
    17641 taaatttcaa aaaggctcaa atttcacaag gtcaagcctt gctaaaaagc actgattgat
    17701 ataaagttaa taaagaaact tttttaaaat ttggagggaa aacaatgaca catattaaat
    17761 ttgattattc caaagcgctc cgtttttttg aagaacgcga acttgattat cttgaaccag
    17821 cagtaaaagc agctcatgat tcattacata atggtacagg tgctggtaat gatgcacttg
    17881 gttggattaa cttaccaaca gattacgaca aagaagaatt tgctcgtatc aaaaaagcaa
    17941 cagaaaaaat ccacagcgac tccgacgtat taatcgttat cggtatcggt ggttcttatc
    18001 ttggggcacg tgctgcaatc gaaactttaa atcattcctt ctataatgta cttgaaaaag
    18061 gtgctcgtaa aacacctcaa gtattctttg caggaaatag cattagttcc tcttacttac
    18121 atgacttaat tgaagtagtt ggcgaccgtg acttctctgt taacgttatt tctaaatccg
    18181 gaacaacaac agagccagca atcgctttcc gtgttttcaa agaactttta atcaaaaaat
    18241 atggcgaaga aggcgcgaaa aaacgcattt acgctacaac tgataaagca aaaggcgctc
    18301 taaaaacatt agctgacaat gaaggctacg aaacatttgt tgttccagat gacgttggcg
    18361 gacgtttctc tgttttaact gcagtaggtt tacttccaat cgcagttagt ggcgttgata
    18421 tcgatgctct tatgaacgga gcagcagcag caagcaaaga tttcgacaaa cctgaactaa
    18481 aaaataacat tgcataccaa tacgcagcag ctcgtaatgt tctttatcgt aaaggcaaag
    18541 taacagaact tctaatcagc tatgagccag gcttgcaata ctttaacgag tggtggaaac
    18601 aattattcgg cgaaagtgaa ggtaaagaca aaaaaggtat ttacccatcc agcgcgaact
    18661 tctccactga cttgcactct atcggccaat atatccaaga cggacgtcgc aacctttttg
    18721 aaacagttat caaagtggat aaaccacgcc acaacttaac tatcaataaa gaagacgtag
    18781 atttagatgg cttaaattat cttgcaggcg aaacagttga tttcgttaat acaaaagcat
    18841 tcgaaggaac tcttctagca catacagacg gcgaagttcc aaactttgtt gtagaagttc
    18901 cagaactaga tgcatacact ttcggttacc tagtatactt ctttgaaaaa gcagtagcta
    18961 tcagcggtta cctaaatggc gtaaatccat ttgaccaacc aggcgtagaa gcatacaaag
    19021 ccaacatgtt cgcattactt ggcaaaccag gcttcgaaga caaaaaagca gaattagaaa
    19081 aacgcttaaa cgattaattt tcacttccaa accttggggc caattgctcc aaggtttttt
    19141 gtttgtttgc gattttcttc cattggagtt accatatagt taaacaaaag gaggggaaga
    19201 agtgctatct atcgaacgaa aacgcgccat cgtccaatat gtcaaaagcc gaaaaatagc
    19261 aactgttagc gaattagcta aacattttga agtccacgaa gcaaccattc gccgcgattt
    19321 aacctcttta gaaaaagaca aaaagctaaa aagaacccac ggcggagtta tgatagaaga
    19381 aaaagtagtt tccgaaccaa attggaaaaa acgaagcgaa gtgcgctatg aagaaaaaca
    19441 acgcatcgcc acgttagcag cgacaatggt caaagacggc gatacaatca ttcttgacgc
    19501 cggaacaaca accggacaca tcgcaaccgc attaaaagac cgatccaaac taaccgtcat
    19561 aacaaacgat atcaacgtag cttccattat gcgcttttcc ccgtctaaag taattgtgac
    19621 aggtggcgtc atctacccag aaactttcat ccttaacggt atgattacga gcggaacctt
    19681 gcagagcatt cacgtacata aagcatttgt aaccacaccg gcactcgata tcgacaaagg
    19741 cttaatgcac tacgacgaat acctaatccc agctaagcaa caaatgctcc actcagccga
    19801 tgaagtcatc ttagtaacag accacaccaa gtttggccgc atttcacttt acaaatacgc
    19861 agccctagac gaaatctctt ctattatcac tggaaaagaa atagacccag tattaaaaga
    19921 acaatttgaa gaaaaaggaa tgcaaattta tacaacataa tgttttaaaa actccattta
    19981 atcaccaatt tatgcaccaa attcatcttt tttcatcttt atttaaaaaa ctttgtaaaa
    20041 agtattgacg aaaggcaaaa atcttggtat atttataaac gttgctgatg cggacaaaac
    20101 gctttcgcaa caaaagaaa
//
LOCUS       DASDXX010000032        19952 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.032, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000032 DASDXX010000000
VERSION     DASDXX010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 19952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19952
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.032"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..278
                     /locus_tag="U0280_000922"
     CDS             <1..278
                     /locus_tag="U0280_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2'-O-methyl transferase"
                     /protein_id="HEM2270876.1"
                     /translation="LIGTLSSVFLSEEKTKREYEKEKLEKDERYINNRKTFSHYLLIV
                     LALTIPIVLIVLNLNGIEQISISSLTIIFLIFCFSYMIVLEIIRKKV"
     gene            complement(331..630)
                     /locus_tag="U0280_000923"
     CDS             complement(331..630)
                     /locus_tag="U0280_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein"
                     /protein_id="HEM2270877.1"
                     /translation="MRSLDAVEILRRGETIERYKEGGNSMLPLIKSMQPVRLEPIGMR
                     ELKVNDIVFCKVRGSFFTHKISKIRGKQYQISNNHKHVNGWITRNSIYGIVTKIW"
     gene            complement(711..1265)
                     /locus_tag="U0280_000924"
     CDS             complement(711..1265)
                     /locus_tag="U0280_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1211 domain-containing protein"
                     /protein_id="HEM2270878.1"
                     /translation="MSKGRLEAFSDGVFAIIITIIVLGMTLPDVFTAASTQAFLWEIF
                     IFIEGGLIIGQFWYSHSRLFDQVTFISTSAVLFNILFLLVLSLIPLFTRAIMQHPDMT
                     APIIGFVMTILITSVIFQLLHHAVYGKDSGIDNWKFRISSFIFVIALGIISFFAPQIS
                     TILFIIFPIAGWIIQLTNRRQPPK"
     gene            1412..2224
                     /locus_tag="U0280_000925"
     CDS             1412..2224
                     /locus_tag="U0280_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2270879.1"
                     /translation="MIRAISVDMDGTFLDGNGEYDRARFEKIYVELMKRGIKFIVASG
                     NQYYQLKSFFPGKDEELFYVAENGAVIFHQGELRSVNRFEERLVQKILRTLIQEYQDL
                     QVILCGVKSAYLLKAADPDFKAFAKKYYFELQELDSFDVLPDDTFIKFALDVEVAKTG
                     QIVEDLNQTFAGEIRAVSSGHGSIDIIIPGVTKGSAIQQLLNEWQVAPDDLLAFGDAN
                     NDIEMLQLTSHSYAMQESSPEVLAAAKHVAPSNKEAGVLQVIEEYMKKSQRP"
     gene            complement(2243..3100)
                     /locus_tag="U0280_000926"
     CDS             complement(2243..3100)
                     /locus_tag="U0280_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HEM2270880.1"
                     /translation="MSIYLIALLPVLGWGFMPIIANLRKSTPEEQLLGTSISALLFAF
                     ILFWILSPEITVLSFIVSFVSGIFWSFGQLLQFKGIAASSVAKAMPISNGTQLVGATL
                     FAVLVFREWQTVTAVIIGVVAVILILIGVVMTGFQKRGNHITESVSFHVYGIVILSSF
                     FLTLYVVTNQLFDVTGFSIILPQAIGMLTCAIGINLAKKTAISRKNVTFNLMTGLSWS
                     IANLGMFLATAVLGVATSFSISQACVIVATIGGILIFKQKKSPLEWTFILSGILLIMV
                     GVVFLSLLK"
     gene            3262..5223
                     /locus_tag="U0280_000927"
     CDS             3262..5223
                     /locus_tag="U0280_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2270881.1"
                     /translation="MKAVTKMIANREKNIIQFLMKTGQTRVGTIANHLGLSEKTVSNS
                     LKEIDVFLKDFDMTVVRKPKIGVYIEGDNKAFAEVSRFLDNQVSPIPSTKEERVIYIF
                     SKLLKADDYITIHQLADELYISRSTIEKNMVEVTKMLEKEGITLYKKPSKGMKLLISE
                     REKRALTSKFINNFWGNNWYLKQEGEKVLQAFDTIKADVTGIFPEEGLKEIIAIVQAF
                     SERHDFAFTDYAFQSIVIHLAIAVERIRAGEYIENVESDPMKDVFDSQRNNTEILVSM
                     LEDRLDIKIPAFEVGYIQLHLTAAYNQQHDELLVSVRPKEDDVAEFVSTCLAEGNYDK
                     SLLDDLTTHMKSAINRLKLGMHFKNPYLSKIKQNFPQAFEEALYFKAKFEQKYDVQVN
                     EDETAYIALHFEAYKERSRSFPDQIRVVLVCSTGLGSSRLLAARIKKYFPMITIEKIL
                     SVQALMETEVDVDLVISTIYLELEDIPSIVVSPMMSKADLQQVESQIERTRRKKKKRS
                     QPFVDLIEPKTIFAKLDVATMEDAITQIGDKLVNLGIAQSGIVESALKREALSFTSFE
                     EMATPHADPALINESHIAIATLKNPVKWGLVEVDKIFFIALTEQNGINLDAMYEQFYK
                     YIDNKKWLEKLTQLKSAAEIYEHLLKDGM"
     gene            5223..5687
                     /locus_tag="U0280_000928"
     CDS             5223..5687
                     /locus_tag="U0280_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2270882.1"
                     /translation="MEVKDILTKELVVFDLEATTKEAAIEEMAEMLDEHGILADKATY
                     VRAVLDREAHSTTGIGNNIAIPHGKSESVTKSAIVFARTKEMIEWESLDDEPVNMIFL
                     LAITDSDKTDGHLKILAEIATKLMDDDIVENLKNTRDEEEVIRILNGGVVEI"
     gene            5684..6004
                     /locus_tag="U0280_000929"
     CDS             5684..6004
                     /locus_tag="U0280_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HEM2270883.1"
                     /translation="MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGAT
                     GIENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAALAL
                     IDEK"
     gene            6017..7123
                     /locus_tag="U0280_000930"
     CDS             6017..7123
                     /locus_tag="U0280_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HEM2270884.1"
                     /translation="MFRKIGSELKKHVLTGISYMIPLVIAGAVIMAIARVGGSFFGIT
                     DIWDAKYADSANSLISLLHSLDGFGGLALGMMFPVIAAFIGYSIADKLALAPGLVGGL
                     LARDIGAGFLGALAAGLIAGYTCLLIKKYVKLPKAAASIVPVFLVPVFGTLITVLIIN
                     YVVGIPFADLNTALENWLNGMSGSNQILMAAIIGAMVGFDLGGPVNKAAVTTAMALLT
                     SGIYAPNTAAQVAIIIPPLGLGLATLIAKRKYNTEMREAGKSSLIMGLVGISEGAIPF
                     AVESPLKVIPATVLGSAVGGALAVGLGAINQAPISGFYGWFTVENWPVYILAIAVGTL
                     IVAGMSVALRKASAGEEMAGSSYDDEIDEAEWEA"
     gene            7139..9721
                     /locus_tag="U0280_000931"
     CDS             7139..9721
                     /locus_tag="U0280_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM2270885.1"
                     /translation="MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEA
                     NFVLDGQLSILDDYVALYPEKLADIKQLIADKQLFIGPWFTQTDAFFAHGESILRNAM
                     IGIFDSKKYGDYMEIGYLPDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVASPYFK
                     WQGLGEEASIYAINMPQGYGTGMLLEPTSAYVDGRLDPAIDFIEKYSKTTEVLIPSGN
                     DQLNIISNFAEKLVEINKMGRHDYQLSTYQDFIQYVRELPDLEEYRGEFRSPVLARVH
                     KTIGSSRMNIKLKSASLEQKLLTRIEPLLVIAKASGISISERLLMHTWKKLLEGQAHD
                     SLAGCVSDPVAEDILHRMKEADELCDSIENTIVKKIADDLSLAANEIIVFNTDSHDFD
                     GCKEIQVVTEHKNIHFPAFPDATIVQEEFIPSRENVLEETPAGNRFIEEPGYYVLQVR
                     VKVELPGLGYRVIAFEENDRELDSMIASNDVAITNNFYKITFENGEIALEKPNGERIT
                     SFITLEDDVNAGDTYDYSPLAGDIAELFTFSEVKTEKSSEVERLILTGKSDFPLDRLT
                     KEGHGDLQIKLILEVKKGSELLDVKVEVDNQIKNHRLRLKVNTGVKTDYNIASLPFGY
                     IKRKPVVPANWRETYSEMPIDIEPLEQSVTLTNEAESCTIFTQGIKEYQQLDQYLALT
                     LLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQLLGKHEFSLAIYLGDQAFDE
                     HKTAERTKAFNQANVSYQRQPFNHFLHRLDNKIQKTERKLGAKQTLGMLNLPKEYLVS
                     ACHPSYYSADKYIIRLENPTNTPQKLALSDMSFEYVNAIEEVVANDNNTIPAYGSVTL
                     RLEI"
     gene            complement(9744..10619)
                     /locus_tag="U0280_000932"
     CDS             complement(9744..10619)
                     /locus_tag="U0280_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2270886.1"
                     /translation="MELRVLNYFLTVAREKTISRAAEVLHLSQPTLSKQLKELEEELG
                     VTLFIRGNRSITLTEDGLYLANRGKEILSLVELTTSNLLQNETISGKIMIGAAETRGF
                     EFIGSVLHELREKHPDITFQLHSGNADDVLEKIEHGLLDFGLVINPVEKLQYEYLPLN
                     IEDTWGILVNTKHSLAKKAVVTPSDIEANPIVVSNQSFIDNQLASWLGEHFEQLNVIG
                     RYNLLYNASLLAKENIASILCIDGIINTENTNLKFIPFSPPLTAGISIVWKKNQTFSS
                     ASKEFLRLIQKTCSK"
     gene            10737..11306
                     /locus_tag="U0280_000933"
     CDS             10737..11306
                     /locus_tag="U0280_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HEM2270887.1"
                     /translation="MIEQDLQKRLVGQEILQGSDLLDEIHKVKQNNEQLIIELNTKYH
                     SKKEVIKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIE
                     DNVLIGPGARLVTVNHLVSPKKRRGLRVAPICVKKNAWIGANATILSGVTIGENAIVA
                     ADATVTRDVPANVIVAGSPAKQIRKIIEE"
     gene            11320..12066
                     /locus_tag="U0280_000934"
     CDS             11320..12066
                     /locus_tag="U0280_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2270888.1"
                     /translation="MTIKNKVIIITGASSGIGEATALLLAEKGAKVVLAARRVEKLEK
                     IVQTIKASSGEAIFAKTDVTKREDNKKLVELAIETYGKVDAIFLNAGIMPNSPLSALK
                     EDEWEQMVDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWA
                     VRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPD
                     RIASIVAYAIDQPEDVNVNEFTVGPTSQPW"
     gene            12262..12687
                     /locus_tag="U0280_000935"
     CDS             12262..12687
                     /locus_tag="U0280_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270889.1"
                     /translation="MGYIRVIFDSFIILEKYHTRVGFDGFALVANEAIFKVQQDTQYL
                     KPYQNLNRPQEQIPELSEEGDTLLNFLEWTKKNNKLVEIMTVWDELIIGTIETIEANL
                     VMINTLAPEEFASDGKCFIECDNIVDICIDTARLKFITA"
     gene            12943..19581
                     /locus_tag="U0280_000936"
     CDS             12943..19581
                     /locus_tag="U0280_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HEM2270890.1"
                     /translation="MKIHAKAKKILVSLIAIMLFLSLIPGYAPMAEETSTGVAEPEKK
                     AGEQAPTEVKDERTENEVVFDNHDGSFTKQIFADPINMEVDGEMKRIDANVEKEADSD
                     MIVPKQTPLELGFLDKMEDGAYQKLTKAGAEVTFRLKGARTGENEQAVTDQPATYKEN
                     EVTYENVFPKTDLRHLTFPQSVKEDIVLHEPNQVDTYVYQIETKLGLELAKNGDVLFK
                     NKSGETMYTLPKPVMTDSNVGAETGEAALSENVSFEVKQLTKTVYELQLKVDTAWLND
                     AAREYPVYIDPSVRLDEVYNANINSAKPTETNIGSKLWDSGQNAYTLKLGKWDNSTGN
                     NAAYLKMDTSTLNKATISKATLKVYNIWHMSPTVKNDLWYYESNANWSPWQVTWNTAP
                     ATTRIGSVNVGRGEWANLDVTKTVQAWASGVRPNNGFRLATNIDQNYWKKLVASENNK
                     NYPYLEVNYTYAQPEKPTVKTNSNGVGTGTGYMDLSWKAVPGATSYNIVISNGYNYEY
                     INTKSTATTWSTKGKKIFPTNDEIANGEFEFHHDGKGTEFALDPRAQYENAFQAGSTF
                     GLRNLTRYLFRVQAVFPGGESPNSDLVFAYMPIEKPQPPAAKAYSNLAHKETGYVELN
                     WEKSPMADGYKVLVFNGKAYEEYDVGAETKWTTQNKGIWPTKEEIAEGKFALHHDGKG
                     DELAKDPSPVYTNSGGNYKERTNYWFRIVAYQKAGNNATSIQSEPATPSLPEVVNKQL
                     GMVDYWTSVPVRGGEVNATNGNFLFHETDFNLEGRGPSINVDRTFNSQDDATGIFGKG
                     WTSTLEEKLIEEENGNIVWVESDKKVHRFTKKGDKYEAPPGIYSEITKNADGYLKIEE
                     DKSETRFLADGRLKSEKDTKGNELTYEYTDGKLTNMRDASGRTVTLAYEGELVKELVG
                     PEDRKISYTYNDKQELISSSTARGKIYCYGYTDGLLTSIYDPKHTEEKPYETTFAYEE
                     EKLTEITDPVGKKTTLSYDMEEQQTTLTNEKKKKTIYSYNDAGNPKKEIVDADGLKLT
                     TTYTYESNNLVKEVNPKGQEETYSYDADGNITQATDAYGTESYTYNGNNDVTSATDTE
                     GRKTTVTYDGADAVSETLATESQVSSVTQYDAYGNPIRGSGELSSAGNLLQNSGFEKG
                     AGVSNWTLIQSDAKGSMTFDSTQSAPGTLGGSGSVKLTSEANSTVKGYSSVTQRVDVE
                     PETTYTFSAWIKTSGMTNADAILIGRLQDANAKDITDAGVWQSNRATSIKKNGGWVKR
                     QLTFKTSKNTRQVLLYLDNEQPAPHKGKGTIWYDNVQFEKGSVASSYNPVVNSSFEEH
                     NGTLPTGWARSGNTALTQAKVVDNEGYSGDSAVYFERKATSEAYTHIAQDVPVNQKEA
                     KALTISALSKSEDAKSNGSVATMSNDYSVWGTINYQDGTTSSVQGQFPLGTNDWNRSA
                     VVIKPTKPIKSVKVYTMFRNGLTGKAWFDDVRVIEGEVLTKNEYDASGNYVTASYDEE
                     GRKISFTYDIYGNKTSETDEKGNKKTLTYDADNALIDTKLANGTSVAYKYDDNGNTTE
                     KNVTASGKTQKNIYEYDVDNKITAFTDALNRTIKYEYDAAGNKTKAIMPNGRVTESTY
                     DSADRMDGIKWNDKLAFKFQYDPNGNQTKVTDEINSIVTDKTYDDANRITKVAERGGD
                     VSYTYKDKPTKDNKGKTDKVGEVAINHGDYTAKTSYTYNDLDRNTRVNDGSKNAYFEF
                     DEFGNINVYTAGNGTAANYTYDSTQKVTNAAISSASGTQILDENYTYDAASNRTSIDN
                     KQDGKTTYEYDAVNQLTKETLPDGTVKAYTYDGFGNRTQVAISGNETKTIAASYNDGN
                     QLVSWNGEALTYDANGNRTSDGKYTYTWDTGDRLSSITKKGESEPFTSYTYDDDDRRL
                     SKTVDGVTTNYHYDGDSIDVLYETDGDGKVVRQYVYSDDNVRLAMKMNGKTLYYHYNA
                     HGDVIALTDEAGKIVAEYAYDAWGNVLKNTASTEEAKANPYGYAGYTYDKEIEQYYLM
                     ARYYEPEQGVFTAYDPDPGDEDDPQTMNGYNYANNNPVMMVDPDGNFPLAIPAVYWGV
                     SGAIAAAPFVGYGIGAAGTKIWNNTKKVNRGYKFLWNNRKQIARKVYKSTRIKWGHIK
                     NRHSPKSSIKKKGKFRNNRTLKRTTRATLRSGKARPGEKGRTILEKTFKERVGVNRDG
                     DPSYRVRVIRAPNGKVITSYPI"
     gene            19598..>19952
                     /locus_tag="U0280_000937"
     CDS             19598..>19952
                     /locus_tag="U0280_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270891.1"
                     /translation="MLKIKKQAQSIYAFKETGGEVLNFQIEKNCLKLFSGEEISCEIN
                     DEIISDRYFKVKEVKLSDEKVCIFCHDGVYDYLLISCIGKHFKYPLGEGVADFLVLND
                     EAYVIYSEEGMFGSEE"
BASE COUNT         6912 a         3673 c         4231 g         5136 t
ORIGIN      
        1 ctttaattgg tacactgagt tctgtattct tatctgaaga aaaaacgaag cgagaatatg
       61 agaaagaaaa actagaaaaa gatgaaagat atatcaacaa tcgcaaaaca ttctcccatt
      121 atttgctgat tgttttagct ttgacgatac caattgtgtt aattgttctt aatttaaatg
      181 ggattgaaca aatctccatt tcgagtctga cgattatttt tcttatcttc tgtttttcgt
      241 atatgattgt tctagaaatt atccgaaaaa aagtatgatt ttaggcaaaa taaaaaacat
      301 ccaacttgtt cgttgcatgt tacctagcat ttaccaaatt ttggtgacaa tgccataaat
      361 actattacgt gtaatccaac cattcacgtg tttgtgatta ttagaaattt gatattgttt
      421 accgcggatt ttactgattt tatgtgtaaa aaaactaccg cgaactttgc aaaatacgat
      481 atcgttgact ttgagttctc tcatgccaat cggttctaaa cgaacaggtt gcatcgattt
      541 aatcaaaggt aacatcgaat ttccgccttc tttataacgc tcaatggttt cgccacgtct
      601 gagtatttct actgcatcca ggcttctcat aattatgctc ctttcttgtt gttagtgcca
      661 gaataacaaa atagtaaagc gaagtcaacg aaatttttcg ctgacttttt ttattttgga
      721 ggctgacggc ggtttgtgag ttgaataatc caaccagcga ttgggaaaat aataaataaa
      781 atggtggata tttgtggagc gaagaaactg ataataccaa gtgcaataac aaatatgaaa
      841 ctagagattc gaaacttcca attgtcgata cctgaatctt ttccatatac agcgtgatgc
      901 aataattgga atatcaccga agtaatcaaa atagtcataa caaatccaat aatcggtgcg
      961 gtcatatctg gatgttgcat gattgctctt gtaaataatg ggataagtga caaaactaat
     1021 aaaaataaaa tattaaataa gacggcagat gtggaaatga atgtgacttg atcaaacagc
     1081 ctgctatgtg aataccaaaa ttgtccgata attaatccgc cttcgataaa tataaaaatt
     1141 tcccataaga aagcctgtgt gctagccgcg gtaaatacgt ctggtaaggt cattcctaaa
     1201 acaatgattg taattataat tgcaaaaaca ccatcactaa atgcttctaa tcttcctttt
     1261 gacaaggttt gggccctcct ttcgtgtctt gttatttatg atatgggcta gtttagtata
     1321 gcatatttta taattaaaca agctgtagca atgtggcgcg aaaaaatttg gtataataga
     1381 ataaaattaa ctttaaaagg agcttaaacg gatgattaga gcgatttctg tagatatgga
     1441 cgggactttt ttagatggaa atggtgaata tgatcgtgct agatttgaga agatttatgt
     1501 tgaattaatg aagcgtggga ttaaatttat tgttgcgagt gggaatcaat attatcagct
     1561 taaatctttt tttccaggga aggatgagga gcttttttat gttgctgaaa atggggcggt
     1621 tatttttcat caaggggaac ttcggagtgt gaatcgtttt gaggaaagat tagttcaaaa
     1681 gattttgcgg acgttgattc aagaatatca agatttgcaa gtgattcttt gtggggtgaa
     1741 gagtgcgtat ttattaaaag ccgccgatcc cgattttaaa gcatttgcga aaaagtatta
     1801 ttttgagttg caagagttgg attcgttcga tgtacttccg gatgatacgt ttattaagtt
     1861 cgcgcttgat gtggaagtgg ctaagacagg gcaaattgtg gaagatttga atcaaacgtt
     1921 tgccggtgaa attcgcgctg tgtcgagcgg gcatggaagt attgatatta taattccggg
     1981 tgtgacgaaa gggagcgcga ttcagcaact attgaatgaa tggcaagtgg cgccagatga
     2041 tttactcgct tttggtgatg cgaataatga tatcgaaatg ttgcaattaa cgtcgcatag
     2101 ttacgcaatg caagaaagca gtccggaagt tcttgctgct gcgaaacatg tggctccttc
     2161 taataaagaa gcgggcgtgt tacaagttat agaagagtat atgaaaaaaa gccaaagacc
     2221 ttgaggtggt ctttggcttt ttttatttca ataaactaag gaacacgacg cccaccatta
     2281 ttaacagtat gccagaaagg ataaaagtcc attctagcgg gctttttttc tgtttgaaaa
     2341 tgaggatacc gccgattgtt gcgacgataa cgcaagcttg tgaaatcgag aagctcgttg
     2401 cgacaccaag tacagcagtc gctaagaaca tgcctaaatt ggcgatggac cacgataatc
     2461 cggtcattaa gttgaatgta acattttttc gggaaatagc agtctttttc gctaagttaa
     2521 taccaatggc gcatgtcagc ataccgattg cttgtggtaa aatgatagaa aagccagtga
     2581 catcaaaaag ctggtttgtc actacgtaaa gcgttaaaaa gaacgaagat agaataacga
     2641 taccgtagac atgaaatgaa accgactccg tgatatgatt cccgcgtttt tgaaacccgg
     2701 tcattaccac cccaatcaag attaaaatta ctgcaacaac tccgataata acagccgtaa
     2761 ccgtttgcca ttcccggaaa acaagaacgg caaaaagcgt tgcgccaacg agttgtgtac
     2821 cgtttgaaat cggcattgcc ttcgcgacac tagaagccgc aatcccttta aactgtagta
     2881 attgcccaaa actccaaaag atacccgaaa caaaactcac tataaaagaa agaaccgtta
     2941 tttctggtga taaaatccag aacaaaatga aagcaaataa tagcgcgcta atcgaagtcc
     3001 ccagtagttg ttcctcgggg gtgctttttc gtaagttcgc aattatcggc ataaatcccc
     3061 acccaagaac agggagtaac gcaataagat aaatagacat aaaataagct tcctttctag
     3121 gttagtggtg ctatttaaat ctaccattct ccaaaatgaa cagcaatatc ccaaaattac
     3181 ggtattcaat gcggtaattt tcgtagtttt ctggggatga gtctttgtaa tagaataagc
     3241 gtagggaaag gaaaattaaa aatgaaagcg gtaacgaaaa tgattgcaaa tcgcgaaaaa
     3301 aatatcattc agtttctaat gaagacaggt caaacacgtg ttggaactat cgcgaatcat
     3361 ctcggacttt cagaaaaaac tgtttcaaat tcactgaagg aaatcgatgt ttttctaaag
     3421 gattttgata tgacagtggt ccgtaaacca aaaatcggtg tgtatattga gggtgataac
     3481 aaggcttttg ccgaagttag ccgatttcta gataaccaag tcagcccaat cccatcaacg
     3541 aaagaagagc gggttatcta cattttcagt aaattgctta aagcagacga ctatatcacg
     3601 attcatcagc ttgcagacga actttacatt agccggagca cgattgagaa aaatatggtt
     3661 gaagttacga aaatgctgga aaaagaaggt attactttgt ataagaaacc tagtaagggc
     3721 atgaaactcc ttattagtga acgagaaaag cgcgccttaa catcgaaatt tattaataat
     3781 ttttggggca ataattggta tttaaagcaa gaaggcgaaa aggtcctcca agcttttgac
     3841 acgattaaag ccgatgtcac cggaattttt ccagaagagg gcttgaaaga aatcattgcg
     3901 attgttcaag catttagtga gcgacatgat tttgctttta ctgattatgc gtttcaatcg
     3961 attgtcattc accttgcgat tgcggtagag cgtattcgag caggagagta tatcgaaaat
     4021 gttgagagcg atccaatgaa agatgtattt gattcgcagc gaaacaatac ggaaatcctc
     4081 gttagcatgc tagaagaccg tttggatatt aaaattccag catttgaagt cggctatatt
     4141 cagttgcatt taacagcagc atataaccaa cagcatgatg agttacttgt aagcgttcga
     4201 ccaaaagaag acgatgtggc agaatttgtc agcacgtgtt tagcggaagg gaattacgat
     4261 aaaagcttac tggatgactt gacgacacac atgaaatccg ccattaaccg gttaaaactt
     4321 ggtatgcatt ttaaaaatcc gtaccttagc aaaattaagc aaaactttcc ccaagcgttt
     4381 gaagaagcgc tatattttaa agcaaaattt gaacaaaagt acgatgtgca agtgaacgaa
     4441 gatgagacgg cgtatatcgc gctacatttt gaggcataca aagaaagaag tcgttctttc
     4501 cccgaccaaa ttcgagttgt acttgtatgc agtaccgggc ttggttcatc aagattactt
     4561 gcggcgagaa ttaaaaaata ttttccaatg attacgattg aaaaaatatt atccgttcag
     4621 gcgttaatgg aaacagaagt cgatgtggat ttagtcatca gcacgattta tctcgaactg
     4681 gaagatattc caagtattgt tgtcagtccg atgatgagta aagccgattt acaacaagtt
     4741 gaaagccaaa tcgaacgaac gagacgcaag aaaaagaaac gcagccaacc atttgttgac
     4801 ttgattgaac cgaaaactat ttttgcgaag ctagatgttg caacgatgga agacgcaatc
     4861 acgcaaattg gtgataagct tgtgaatctt ggtattgctc aatcagggat tgttgaaagt
     4921 gcgctaaaaa gagaagcgtt atcgttcact tcttttgaag aaatggcgac accacacgca
     4981 gatcctgcac ttattaatga atcgcacatc gctattgcca cacttaaaaa tccagtgaaa
     5041 tggggcttag tcgaggtgga taaaatcttt tttatcgctc tgaccgaaca aaatggcatt
     5101 aatttagacg cgatgtatga acagttttat aaatatattg ataataaaaa atggcttgag
     5161 aagctgacac aactaaaaag tgccgcagaa atttatgagc atttgttaaa ggatgggatg
     5221 taatggaagt aaaagatatt ttaacaaaag aattagtcgt ctttgattta gaggcgacga
     5281 caaaagaagc agcaattgaa gaaatggcag aaatgctaga tgaacatggt attttagcgg
     5341 ataaagcgac ttatgttcgg gcagttttgg atcgcgaagc acattcaaca actggaatag
     5401 gaaataacat tgctatccca cacggaaaaa gtgaaagtgt cacaaaatcg gccatcgttt
     5461 ttgcaagaac gaaagaaatg attgagtggg aatcactgga tgacgaaccg gtaaatatga
     5521 ttttcttact ggcgattact gattctgaca aaacagacgg tcacttaaaa atccttgcag
     5581 aaattgcaac gaaactaatg gacgatgata ttgtcgaaaa tttaaaaaat acaagagacg
     5641 aagaagaagt tattcgaatt ttaaatggag gcgtagtaga gatatgaaac gtaaaattat
     5701 cgcagtaacc gcatgtgcga caggagtggc gcacacatat atggcagcac aagcacttaa
     5761 aaaaggcgcg aaaaaaatgg gcaatcttat caaagtagaa acacaaggcg cgacaggaat
     5821 tgagaatgaa ttaaccgaaa aagatgtaaa tatcggcgaa gtagttattt tcgcagtaga
     5881 tacaaaagtt cgtaacaaag aacgttttga tggtaaagtc gtgctggaag ttccagtaag
     5941 cgcaccgatt aaagatgcag aaaaagtaat caacgcagca cttgcgttaa ttgacgaaaa
     6001 ataaggagga tctaccatgt tcagaaaaat tgggagtgaa ctgaaaaaac acgttttaac
     6061 aggtatttca tatatgattc cgctcgttat tgcaggcgcc gtgattatgg cgattgctcg
     6121 ggttggtggt tcgtttttcg gaattacaga tatttgggat gcgaaatacg cagacagtgc
     6181 gaatagttta atttcactac tgcatagttt agatggtttt ggtggcttgg cgctaggaat
     6241 gatgttcccg gttattgcag catttatcgg gtattcgatt gcggacaaat tagcactagc
     6301 acctggtctt gttggtggtt tactggcacg tgatattggc gctggtttcc tcggggcact
     6361 ggcagctggt ttaatcgctg gttacacatg tctattgatt aaaaaatacg tgaaactgcc
     6421 aaaagcggcg gcttcgattg taccggtatt tttagtacca gtttttggca cacttattac
     6481 cgttcttatt attaattatg tggttggtat tccttttgct gacttaaata cagcccttga
     6541 aaattggcta aatggtatgt ctggatcgaa tcaaattcta atggcggcta ttatcggagc
     6601 aatggttggt tttgacttag gcggacctgt aaataaagca gctgtaacaa cggcgatggc
     6661 acttttaaca agtggaattt atgcaccaaa tacagcagca caagtagcaa tcatcatccc
     6721 accacttggt cttggtttag caaccttaat cgcaaaacgt aaatataata ctgaaatgcg
     6781 tgaggcagga aaatcttctc ttatcatggg acttgttggg attagtgaag gggcaattcc
     6841 tttcgcggta gaatctccgc ttaaagttat tccggctacg gttcttggtt ctgctgtcgg
     6901 cggggcacta gctgtaggtc ttggcgcaat taaccaagcg ccaatcagtg gtttttatgg
     6961 ctggttcaca gtagaaaatt ggccagttta tattttagcg attgccgttg gaacgctaat
     7021 cgttgcgggt atgtcagtcg ctttacgtaa agcaagtgct ggcgaggaaa tggctggttc
     7081 aagctacgat gacgaaattg acgaagcaga atgggaagct taaaaaacgg aggtaactat
     7141 ggttaaagca catattgtga accatacgca ttgggaccga gagtggtatt ttacctcggc
     7201 cgatgcactg gttctaagtg aacaactttt tacagaagta attgacgaat taaaaaagca
     7261 cccagaagca aactttgtac ttgatgggca actgtcgatt ttagatgatt atgtcgcact
     7321 gtacccggaa aaattagcgg atattaagca attaattgcg gataaacaac ttttcattgg
     7381 accgtggttt acgcaaacag atgccttttt cgcgcatggt gagtcgattt tgcgcaatgc
     7441 gatgattggg atttttgata gtaaaaaata cggcgactat atggaaattg gttatttgcc
     7501 agatacattt ggttttaatg cccaaatgcc gactttactt gaacatgctg gctttgataa
     7561 tgtgattttc tggcgtggga ttcatcttgg tgaacatgtt gcgtctccat attttaaatg
     7621 gcaaggactt ggagaagaag cgtcgattta tgcgattaat atgccacaag gttacggcac
     7681 agggatgctc cttgaaccaa cctcggcata tgtggatgga cgcctcgacc cggcaattga
     7741 tttcattgaa aagtacagta aaacaactga agttttaatt ccatctggga atgatcagct
     7801 gaatattatt agtaactttg ccgaaaaatt agtggaaatc aacaagatgg gacgccatga
     7861 ttatcaactt agtacctatc aagattttat tcaatatgtt agagagctgc ctgacttaga
     7921 agaatatcgc ggcgaattta gaagtccggt tcttgcgcga gtgcataaaa ccattggatc
     7981 tagccgaatg aatattaagc taaaaagcgc gtcactcgag caaaaattgc taacacgtat
     8041 tgagccactt cttgttattg ctaaagcatc tggaatttct attagcgagc gtttactaat
     8101 gcatacgtgg aagaaacttt tagaaggtca agcgcatgat agcttggcgg gctgcgtttc
     8161 tgatccagtt gccgaagata ttttgcaccg gatgaaagaa gccgacgaac tatgcgatag
     8221 tatcgaaaac acgattgtga agaaaattgc cgatgatttg tcacttgcgg cgaacgaaat
     8281 tatcgttttt aacacggatt cacatgattt tgacggatgt aaggaaatac aagtagtaac
     8341 cgagcataaa aacatccatt tcccagcgtt tccggacgca acgattgtcc aagaagagtt
     8401 cattccatcg cgcgaaaatg tgctagaaga aacgccagct ggaaaccgat ttattgaaga
     8461 accgggctac tatgtgcttc aagtgcgcgt caaagtggag cttccaggcc ttggttaccg
     8521 cgtgattgct tttgaagaga atgaccgcga actggattcg atgattgctt ccaatgatgt
     8581 ggcaatcacg aataatttct acaaaatcac ttttgaaaat ggcgaaattg ctcttgaaaa
     8641 accaaacggc gagcgcatca cttcttttat tacactagaa gatgatgtga atgcgggaga
     8701 tacgtatgat tattcaccac tagccggaga tatcgcggaa ttattcactt tttccgaagt
     8761 gaaaacggag aaatcaagcg aagtcgaacg tttaatttta acaggaaaaa gcgatttccc
     8821 acttgatcgt ttgacgaaag aagggcatgg cgacctgcaa atcaaactca ttttagaggt
     8881 gaaaaaaggt agcgaactgc tggatgttaa agttgaagta gataaccaaa ttaaaaatca
     8941 ccgtctacgc ttaaaagtaa acacaggtgt gaaaacagac tacaacatcg cttcacttcc
     9001 attcggatat atcaagagaa aaccagttgt accagcgaat tggcgagaaa catatagcga
     9061 aatgccaatc gacatcgaac cacttgaaca aagcgtgacg ctaacaaatg aagcagaaag
     9121 ttgtaccatt ttcacacagg gcatcaaaga ataccaacaa ttggatcaat atttagcact
     9181 gacgctactg gcaacaaccg gacaactcgg aaaacctgat ttagcatacc ggccaggccg
     9241 agcatcaggc gacacaacga aaaaaggtca cgtgctcata gaaacagaag gcgcgcagtt
     9301 acttggtaaa catgaatttt cattagccat ctatcttggc gaccaagctt tcgacgaaca
     9361 taaaaccgct gaacgaacaa aagcgttcaa ccaagcaaac gtgtcttacc agcgtcaacc
     9421 attcaaccac tttttacatc gcttggataa caaaatccag aaaacagaac ggaaattagg
     9481 cgcgaagcaa acgttaggta tgttgaattt gccgaaagaa tacttagttt cagcgtgcca
     9541 cccgtcctac tactcagcag ataaatacat tatccgcctg gaaaacccaa ctaacacacc
     9601 acaaaagttg gcactctcgg atatgtcgtt tgagtatgtg aatgctatcg aagaagttgt
     9661 tgcaaatgac aacaacacga ttccagcata tggctctgtt acgttacgat tagaaatata
     9721 gaaagaaaac ttgctcaaag tatttatttt gagcaagttt tttgtattaa tcgtaaaaat
     9781 tccttcgaag cactggagaa agtttgattc ttcttccaca caatactaat tccagcagtt
     9841 agaggcggcg aaaaagggat aaacttcagg ttagtatttt ccgtattgat aataccatca
     9901 atacaaagaa tacttgcgat gttctcctta gcgagcaaag aggcattata cagtaaatta
     9961 tatctaccaa ttacattcaa ttgttcaaaa tgctctccaa gccaactagc tagctgatta
    10021 tcaatgaaag attggttgga aacgacaatc ggattagctt caatatcact aggagttaca
    10081 accgcttttt tcgctaaaga atgttttgta ttgactaaaa ttccccaagt atcttctata
    10141 ttaagtggta aatattcata ttgtagtttt tccacaggat taattaccaa accaaaatct
    10201 agtaaaccgt gctcaatttt ttctaaaaca tcatccgcat tgccgctatg caattgaaaa
    10261 gtaatgtcgg gatgcttctc tctaagttca tgtaacacgc taccgataaa ttcaaatcct
    10321 ctcgtttcag cagcaccaat cattattttt ccgctaatcg tctcattttg aagtaaattc
    10381 gaagtagtta actccactaa agataaaatt tctttcccgc gattagctaa ataaagccca
    10441 tcctctgtta acgtaatgga ccgatttcca cgaataaata aagttacccc tagttcttcc
    10501 tcaagttcct tcaattgttt agaaagcgtt ggctgagaaa gatgaagcac ttccgcagct
    10561 ctactaatcg ttttttcacg agcaacagtt aaaaaataat tcaacacacg aagctccatt
    10621 aaaatcaccc tttcctataa ctaaaatgaa tagttggata tgttttataa gtattattca
    10681 attataactt ctcccgctat aattaaatag taaaagattt tcgaggggga aagcgcatga
    10741 tagaacaaga tttacagaaa agactagtcg gccaagaaat tctccaaggg tcggatttgt
    10801 tagatgaaat tcacaaagta aagcaaaaca atgaacaact tatcatcgaa ctaaacacca
    10861 agtaccactc aaaaaaagaa gtgattaaat atctcagtga catcactgga aaaccagtcg
    10921 atccatcagt cgatgtctca cttccttttt atagcgactt cgggaaacat attacttttg
    10981 ggaaaaatat ctttatcaat ttaaatgtaa ctttcgtgga tttgggtggg attacaattg
    11041 aagataatgt tttaattggc ccaggagcaa gacttgtgac cgtcaaccat ttagttagcc
    11101 cgaaaaaaag acgtggctta agagtagccc caatttgtgt gaagaaaaac gcctggattg
    11161 gcgcaaacgc aacgatatta tcaggcgtaa caatcggcga aaatgctatc gttgctgcgg
    11221 atgctaccgt cacaagagat gtcccagcaa acgttatcgt cgccggaagc ccagccaaac
    11281 aaattcgtaa aattatcgag gaataaggag agatagcaaa tgacaatcaa aaataaagta
    11341 attattataa ccggagcatc atccggaatt ggtgaagcaa cagccttact tttagctgaa
    11401 aaaggggcga aagtggttct tgctgctcgt cgcgtagaaa agctggaaaa aattgttcaa
    11461 acgattaaag cgagttcagg cgaagcaatt tttgccaaaa cggatgtgac aaaacgcgaa
    11521 gacaataaga aattagtaga attagcgatt gaaacatacg gaaaagtaga tgcaatcttt
    11581 ttaaatgcgg gaatcatgcc gaattcgcca ttatctgctt taaaagaaga cgaatgggag
    11641 caaatggttg atatcaatat taaaggcgta ctgaatggaa ttgccgcagt tttgccttct
    11701 ttcatcgctc aaaaatcagg acatatcatc gccacttctt ctgtagcagg attaaaagca
    11761 tatcccggcg gcgcagtata tggcgcgact aaatgggcag tccgtgactt aatggaagta
    11821 ttacggatgg agtcagcgca agaaggaacc aatatccgca cagcgaccat ttatccagca
    11881 gctatcaata cggaattact agaaacaatc acggataaag aaaccgaaca aggaatgacg
    11941 agcttataca aacaatacgg catcacacct gatcgtatcg cgagcattgt tgcgtatgct
    12001 atcgatcaac ccgaagacgt caacgtaaat gaattcacag taggtccaac cagccaaccg
    12061 tggtaaatgg aaaagccttg aacggattga ttattcgttc aaggcttttt ttgtattgca
    12121 ggagaggatt aaacatggta tcttaaattg aaagcgctta aaaaagaggt gaaccaatga
    12181 aatcgtaaac aattagaaca actaaaccaa aagtgccttt atgaagtata tgatgatgag
    12241 caacaaacaa atgattttcg tgtgggatat atcagagtta tttttgattc gttcattata
    12301 ttggaaaaat accatactag agtgggattt gatggttttg cactcgtagc aaatgaagct
    12361 atttttaaag ttcaacaaga tactcaatat ctgaagccgt atcaaaattt aaaccgacct
    12421 caggaacaaa tacctgaatt aagtgaggaa ggcgacacac tattgaattt tctggaatgg
    12481 acgaaaaaga acaacaaatt agtggaaata atgactgttt gggatgagct aattatcggg
    12541 acaatagaaa cgattgaagc aaatttagta atgattaata cccttgcacc agaagaattt
    12601 gcatctgatg ggaaatgctt tatagaatgc gacaatattg ttgatatttg tattgataca
    12661 gcgcgactga aatttattac tgcttaacta tttaacacta attataatta ataaaattaa
    12721 taattcaaac aaaaagtaaa aattttacat tttgcataac tttttggaat gaaaacatgc
    12781 tataataatt ttgtaatatt aggaaaagga ccagttttat ctcaattaaa actggtcctt
    12841 ttttagaaag agagggcagt gaagttgtta gcggcaagtt aaaaaaagag aaattagcaa
    12901 ggcatcgaat gaaattacat tgaaaaaggg agagcttgac acatgaaaat acatgcaaaa
    12961 gcaaaaaaaa tcttagtgag cctaatagct attatgctat ttctttcact aatacctggt
    13021 tatgcaccaa tggcggagga gacgtcaact ggggtagcag aaccagaaaa gaaagcggga
    13081 gaacaagcac caacagaagt gaaagacgaa cgaacagaaa atgaagtggt ttttgataat
    13141 cacgacggga gctttacaaa acaaatcttt gcggatccta tcaatatgga agttgatggc
    13201 gagatgaaac gcatcgatgc gaatgtggag aaagaagcag attctgacat gattgttcca
    13261 aaacaaaccc cattagaact aggcttctta gacaaaatgg aagacggcgc ataccagaaa
    13321 ctaacaaaag ctggcgcaga agttactttt cgcttaaaag gagcacgtac aggcgaaaat
    13381 gaacaagcag tcacagacca accagcgacc tacaaagaaa atgaagttac ttatgaaaat
    13441 gtatttccta aaacagattt acgtcattta acttttccac aatcagtaaa agaagacatc
    13501 gtgctacatg aacctaatca agtagatacg tatgtttatc aaatagaaac aaaactaggt
    13561 ttagagctgg caaagaatgg cgatgtgcta ttcaaaaata aatctggcga aacaatgtat
    13621 acgcttccga aaccagttat gacagattcc aatgtcggcg ctgagaccgg ggaagcagcg
    13681 ttatccgaga atgtttcctt tgaagtgaag caactaacca aaacagtcta tgagctacaa
    13741 ttaaaagtag atacagcatg gctaaatgat gccgcgcgcg aatatcctgt ctatattgat
    13801 ccatctgtcc ggttagatga agtgtataat gccaacatca attcagctaa accaacagaa
    13861 accaatatcg ggagcaagct ttgggattct ggccaaaatg cttacacgtt aaaacttggt
    13921 aaatgggaca attcaacagg aaataatgcc gcctatttaa aaatggacac gtctacttta
    13981 aataaagcga cgatttctaa agcaacgcta aaagtgtata acatttggca tatgtcccca
    14041 acagttaaaa atgatctttg gtactatgaa tctaatgcga actggtcccc atggcaagtg
    14101 acatggaata cagctcctgc aacgacacgg attggaagcg tcaatgtcgg ccgaggtgag
    14161 tgggcgaatt tagatgtcac taaaacagtt caagcatggg caagtggcgt gcgaccaaat
    14221 aacggtttcc gtctagctac gaacatcgat caaaactatt ggaaaaaatt agtagcaagt
    14281 gaaaataata aaaactatcc ttatctagaa gtaaattata cgtatgctca accggaaaaa
    14341 cctactgtta aaacgaattc gaatggagta ggaactggaa caggttacat ggatttatct
    14401 tggaaggctg ttcctggtgc aacgagttat aatatcgtta tttctaatgg atataactac
    14461 gaatatatta atacaaaaag caccgcaacc acttggagca ctaaagggaa gaaaattttc
    14521 ccaacaaatg acgaaatcgc taatggagaa ttcgaattcc accatgatgg caaaggaacc
    14581 gaattcgctc ttgatccgcg agcgcaatat gaaaatgcgt ttcaagctgg aagtactttt
    14641 ggactgcgca atttaacgcg ctatttattc agagtgcaag ccgttttccc gggtggagaa
    14701 agtccgaatt ccgacttagt atttgcctat atgccaatcg aaaaaccaca accccctgct
    14761 gcgaaagcat attctaactt agctcataaa gaaacaggat acgtggaact taactgggaa
    14821 aagagcccaa tggcggatgg ctataaagta cttgtcttca atgggaaagc ctacgaagaa
    14881 tacgatgttg gcgcagaaac aaagtggacc acccaaaata aagggatttg gccaaccaaa
    14941 gaagaaattg cagaaggtaa attcgctctt catcatgacg gaaaaggcga tgaactagca
    15001 aaagatcctt ctccagttta taccaattct ggcggtaatt ataaagaacg aacaaactac
    15061 tggttccgaa ttgttgcgta ccaaaaagcg ggaaataatg ccacaagtat tcaatccgaa
    15121 ccagcgacac catcccttcc agaagtagta aataaacagc taggaatggt agattactgg
    15181 acaagtgtgc cggtacgtgg cggcgaagta aacgctacaa atggaaactt tttattccat
    15241 gaaacagatt ttaacttaga aggccgcggc ccgagcatca atgtcgaccg tacttttaac
    15301 agtcaagatg acgcaacagg catttttggt aaaggctgga caagtacgct tgaagagaaa
    15361 cttattgaag aagaaaacgg aaatatcgta tgggtggaat cggacaagaa agtccatcgt
    15421 ttcactaaaa aaggtgataa atacgaggct ccaccaggca tttactccga gattactaaa
    15481 aacgcagatg gctatttgaa aatagaagaa gataagtcag aaacgcgctt tttagctgat
    15541 ggacgattaa aatccgaaaa agatacaaaa ggcaacgaat taacttacga atatactgac
    15601 ggcaaactaa caaacatgcg cgacgcttcc ggacgtaccg tgactttagc gtatgaaggc
    15661 gagctcgtaa aagaacttgt cggaccagaa gaccgtaaaa tcagctacac gtataatgac
    15721 aaacaagagc taatcagttc atccactgcc cgcggtaaaa tatactgcta tggctacaca
    15781 gatggcttat taacatcgat ttacgatcca aaacatacag aagaaaaacc atacgaaaca
    15841 acctttgctt atgaagaaga gaaattaaca gaaataaccg atccggtcgg caaaaaaaca
    15901 acactttctt atgacatgga agagcaacaa acaactttaa caaacgagaa aaagaagaaa
    15961 accatttatt cctacaatga tgctggaaat ccaaagaaag aaattgtgga tgcagatggt
    16021 ctcaaactca caacgaccta cacgtatgaa tcaaataacc tagtaaaaga agtgaatcct
    16081 aagggacaag aagaaacata ttcttacgat gcagatggta atatcacgca agcgacagat
    16141 gcttacggta cagaatcata tacctacaat ggaaataacg atgtaacgag cgcaactgac
    16201 acagaaggac gcaaaacgac ggttacttat gacggagcag atgcggtgtc agaaacactt
    16261 gcgacagaat cccaagtatc ctctgtaacg cagtatgacg cctatggaaa tccaattcga
    16321 ggtagtggtg aactttcttc agcaggtaac ttacttcaaa acagcggctt tgaaaaagga
    16381 gcaggagttt ccaactggac actgattcaa tctgatgcaa aaggaagcat gacattcgat
    16441 agcactcagt cagctccagg aacactcggc ggcagcggtt ccgttaaact aacgagtgaa
    16501 gcaaattcta ccgtaaaagg ctattcatcc gttactcaac gcgttgatgt agaaccagaa
    16561 acaacgtata catttagcgc ctggattaaa acatccggaa tgacaaacgc cgatgcaatt
    16621 ctcattggac gtttacaaga tgcgaatgca aaagatatta ccgatgctgg cgtatggcaa
    16681 tccaaccgtg cgacatccat caaaaagaac ggcggctggg taaaacgtca attaaccttt
    16741 aaaacatcta aaaacacgcg ccaagtcttg ctttatttgg acaacgaaca accagctccg
    16801 cataaaggaa aaggaacaat ttggtacgac aatgttcaat ttgaaaaagg tagtgttgct
    16861 tccagttaca acccggtagt caacagcagt tttgaagagc acaatggaac gcttccgact
    16921 ggctgggcac gttcaggaaa taccgcactt acacaagcaa aagtagtaga taatgaaggt
    16981 tacagtggtg atagtgccgt ttattttgaa cgaaaagcaa caagtgaagc ctatacacac
    17041 attgcccaag atgtgccagt aaatcaaaaa gaagccaaag cattaacgat ttccgcacta
    17101 tccaaatcag aagatgccaa atcaaacggc tcagttgcaa cgatgtcgaa cgattattct
    17161 gtctggggaa caatcaacta tcaagatggc acaacttctt ccgtacaagg acaattcccg
    17221 ctaggaacca acgactggaa ccgaagcgca gtagtaatta aaccaaccaa accaatcaaa
    17281 tcagttaaag tttacaccat gttccgcaat ggtttaacag gaaaagcatg gtttgacgac
    17341 gtacgtgtca tagaaggcga agtattaaca aaaaatgaat acgacgcttc cggcaactat
    17401 gtaacagcca gctatgacga agaaggccgc aaaatcagct tcacttacga tatttacggc
    17461 aataaaacat ccgaaacaga cgaaaaaggc aacaaaaaaa ctttaaccta tgatgcagac
    17521 aacgcgctta tagacacaaa actagcgaac ggcacatccg tagcctataa gtacgacgac
    17581 aatggcaaca ccaccgaaaa aaatgtcact gcatccggca aaacgcaaaa aaatatctat
    17641 gaatatgacg tggataacaa aatcaccgca tttaccgatg cactaaatcg cacaatcaag
    17701 tatgaatacg atgcagccgg taataaaaca aaagcaatca tgccaaatgg tcgcgtaacc
    17761 gaaagcacat acgattccgc tgaccgcatg gacgggatta aatggaatga taaactagcc
    17821 tttaaattcc aatacgatcc aaacggcaac caaacaaaag taaccgacga aatcaacagc
    17881 atcgtaaccg acaaaaccta cgacgatgcc aaccgaatca ccaaagtagc cgaacgaggt
    17941 ggcgacgtaa gctacacata caaagacaaa ccaacaaaag ataacaaagg aaaaacagac
    18001 aaagtcggcg aagtagccat taaccacggc gactacacag caaaaacaag ctacacatac
    18061 aacgacttag accgcaatac ccgcgtaaac gatggaagca aaaacgccta tttcgagttt
    18121 gacgaatttg gaaacatcaa cgtctacaca gcaggaaacg gcaccgcagc caactacacc
    18181 tacgatagca cccaaaaagt caccaacgca gctattagta gcgcaagcgg cacccaaatt
    18241 ttagacgaaa actacaccta tgacgcagca agcaatcgca caagcatcga caacaaacaa
    18301 gacggaaaaa caacctacga atatgatgca gtcaaccaac taactaaaga aacactacca
    18361 gatggcaccg taaaagcata cacctacgat ggcttcggaa accgcacaca agtagcaatc
    18421 agcggaaacg agacaaaaac aattgccgca agttataatg atggtaatca actggtttcg
    18481 tggaacggag aggctctgac gtatgacgcg aatggtaacc gtacaagcga tggcaagtac
    18541 acgtatacat gggataccgg cgaccgttta agcagcatca caaaaaaagg tgagagcgag
    18601 ccgtttacga gttatacgta cgatgatgac gatcgtcgtc tatcaaaaac ggtcgatggt
    18661 gtgacgacga attatcatta tgacggcgat agtattgatg ttctgtatga aactgatggg
    18721 gatggaaaag tagttcgtca gtatgtttat tcggatgata atgttcgttt agcgatgaag
    18781 atgaatggta aaaccctcta ttatcactat aatgcgcatg gcgacgtgat tgcactcacg
    18841 gatgaagcag gtaagattgt cgcagaatat gcgtatgatg cttggggaaa tgtgctgaaa
    18901 aacactgcct ctacagaaga agccaaagcg aatccttatg gttatgcagg atacacgtat
    18961 gacaaggaaa tcgaacaata ttacttgatg gcgcgttatt acgaaccaga gcaaggtgtg
    19021 tttactgctt acgacccaga cccaggtgat gaagacgacc cgcagacgat gaacgggtat
    19081 aattatgcga ataataatcc ggtgatgatg gttgacccgg atgggaactt tccattagcc
    19141 attccagctg tttattgggg agttagtgga gctattgcag ctgcgccatt tgttggttat
    19201 ggtataggtg cagcaggaac aaagatatgg aataacacta aaaaagtgaa taggggatat
    19261 aagttccttt ggaataatcg taaacagatt gctagaaagg tgtataagtc aactagaatt
    19321 aagtggggac atattaagaa taggcactct cctaagtcat cgattaaaaa aaaggggaaa
    19381 ttcagaaata ataggactct aaaaagaaca acaagagcta cattaagaag tgggaaagct
    19441 agaccaggag agaaaggccg gacaatttta gagaaaacat tcaaagaaag ggtaggcgtg
    19501 aatcgtgacg gggacccgag ctatagagta agagttatca gagctccaaa tggtaaagta
    19561 attacatcat atcccattta agcaggaggt aaacactatg ttaaaaataa aaaaacaagc
    19621 acaatctatt tacgctttta aagaaactgg aggagaagta cttaatttcc aaatagaaaa
    19681 aaactgtttg aaactttttt ctggggaaga aatttcatgt gaaataaacg atgaaataat
    19741 ttctgatcgg tatttcaaag ttaaggaagt caaattgtct gatgagaaag tttgtatttt
    19801 ttgtcatgat ggtgtttacg attatttatt aatctcatgt atagggaagc attttaaata
    19861 tccattggga gaaggtgtgg cggatttcct cgttttaaat gatgaagctt atgttattta
    19921 ttcagaagaa ggtatgtttg ggagtgagga ga
//
LOCUS       DASDXX010000033        19061 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.033, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000033 DASDXX010000000
VERSION     DASDXX010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 19061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19061
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.033"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            35..247
                     /locus_tag="U0280_000938"
     CDS             35..247
                     /locus_tag="U0280_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2270892.1"
                     /translation="MVFAKKLVASIAVFISLGFIYFRESTAVAFESTNTASFLPSTGD
                     AFSVWPIVIGVVLVALAVVLFIKKKI"
     gene            complement(290..1018)
                     /locus_tag="U0280_000939"
     CDS             complement(290..1018)
                     /locus_tag="U0280_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEM2270893.1"
                     /translation="MRIWIKSLLVITACIFSLTLLNTKYTFYSPTVKLESAKVVYKLD
                     NEPFNVRLDVPLVNQMDAPTLFNGCEVTSLAMLLQFNGKRVTKNELANNLPTTPIEQN
                     GLHGNPDKAFVGSISGDSPGLGVNHAPIANLAAKYVNEAHVHDISGNSIQDIITVLST
                     GAPVWIITTTDYHAPKNWQTVQTKEGKKKITYSMHSVVITGFDKDNFYINDPYGHKNR
                     AVKRSVLEEGWSAMGKQAIYLSHP"
     gene            complement(1031..2836)
                     /locus_tag="U0280_000940"
     CDS             complement(1031..2836)
                     /locus_tag="U0280_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEM2270894.1"
                     /translation="MNLIKNRKLKTKLSINIVITTIMLIGLGATSFLGFRHVATLSDN
                     MVDNNVAPMKEIAKIQTNMAQINIDILTMFDTINGKSALIKDIDDLYAENDQAIHNFK
                     KANLTAEDKKQLAYFEEKLADMKSSASSVISDTSSALDDAELLGAQNRYYQNVKTKFD
                     DATKQLNVLNEMNYKEVENSSQAISDFGVKISIIFTAVIIAVLISLFIFNAYITRVIL
                     KGIRHLQTAVHKVASGDLSYRSTYNGRDELGDITNDLNEMSENLRLMIEDVKKASTDV
                     KSSSDNVIISSEIISAMTTEMDIEMKMMGEQIQTQIGSMKESTDAMDQMTGGVQNVAE
                     YALKVSDLTKDSAEKTNDGIAVINNLVSQMDRISGVMRSSTDVVSQLVNRVGEVEKAL
                     DTVTNIADQTNLLALNAAIESARAGEHGRGFAVVAEEVRKLAEQSRLAVVDINTVLKK
                     IQTESKTTIEVMNTGLSESEAGQKIISETEATFTDLLNRVNDISAQMQNVSQETEEMA
                     AGIEEVNTSISDVTEISNQIGEKSTAALEFAEVNKMKVDELVVISEEMQKISGSLEGY
                     IANFNTEVSEEAVEVTEEPESETKDPGEPVLAENV"
     gene            complement(2997..4727)
                     /locus_tag="U0280_000941"
     CDS             complement(2997..4727)
                     /locus_tag="U0280_000941"
                     /EC_number="1.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate oxidase"
                     /protein_id="HEM2270895.1"
                     /translation="MKKVKASETLVQTLKNWGIDHVYGLPGDSIDTVVDALRKEQEAI
                     EFIHVRHEEVATLAAAAYTKLTGKIGVALSIGGPGAIHLLNGMYDAKMDHVPMLVLAG
                     QVTTDVLNTGFFQEVNLPAIFEDVAVYNKQIDNAETLADVVDEAIRTAYKEKGVAVLT
                     IPNDIPSQVIKASLEAKTVKFEQENPKLDEAAIQEAVARIEKAEKPVILAGLGTKHAG
                     PELIAFSEKLKIPIIHSLPAKTIVPDNHPNALGNLGKIGTKPAYEAMQETDLLLMFGN
                     DYPYSDYLPKKADCIQIDIDPAKISKRFPATVGLVGDAAEIIGNLTAKTAPVEERKFL
                     QACQENMQEWWKWLEEDIAQTTDPIAPEVVMANIQKIADKDAIFSIDVGTATVWSTRY
                     LHLTPQNDFIVSAWLGTMGCGLPGAIAAKKAFPDRQAIAIVGDGGFSMVMQDFVTAVG
                     LNMPMIVVVLNNQQLSFIKYEQQSAGELNYAIDLPDINYAKFAESCGGIGFRVEKMAD
                     LEAAFGNAKLATKPVIIDVSVDSAAAPLPGKIVMDEALGYTKFEIQSVLEDHRFAKMP
                     PLKTILRRFL"
     gene            4998..5645
                     /locus_tag="U0280_000942"
     CDS             4998..5645
                     /locus_tag="U0280_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G-binding protein"
                     /protein_id="HEM2270896.1"
                     /translation="MKEFIEPYQYNFIKNQLANVSRAYRSANDTSTLKALKSLTEEKI
                     NELFPESVLEEHKELFSELHAITSTKEAEPFLDGLKAYVIPFAPPSDVKLKKLFAKTK
                     KLKIPAWSKLDLRDYTFYGWNDIAQQRKYIVTYEDGNLVGVQGTISTEIQKGVCSICH
                     SHSKVSLFMAKTKSSSDGIYTTNGNYICYDSDVCNQQIKTHETLDEFIEVVKKRK"
     gene            complement(5688..6011)
                     /locus_tag="U0280_000943"
     CDS             complement(5688..6011)
                     /locus_tag="U0280_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1048 domain-containing protein"
                     /protein_id="HEM2270897.1"
                     /translation="MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFA
                     KGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKL
                     RDSIK"
     gene            complement(6011..6337)
                     /gene="lftR"
                     /locus_tag="U0280_000944"
     CDS             complement(6011..6337)
                     /gene="lftR"
                     /locus_tag="U0280_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464246.1"
                     /note="act as a regulator of LieAB which is involved in
                     aurantimycin A resistance; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator LftR"
                     /protein_id="HEM2270898.1"
                     /translation="MKGLTELLKGSLEGMILERISRGETYGYEITKYLNDLGFDEIVE
                     GTVYTILVRLEKKGLVEIEKKKSELGPPRKFYTLSPAGEEELAIFWKRWDFIQGKIMQ
                     VKGGQA"
     gene            complement(6456..7100)
                     /locus_tag="U0280_000945"
     CDS             complement(6456..7100)
                     /locus_tag="U0280_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270899.1"
                     /translation="MGNWQQKWESWRDMTVAMQQEIKIEAAEKVTSYIKNDQFEEAIN
                     VIRQTENLLNELDFETKMNRVEEQLQAFTSDQEAAKSFEASQLQNLEKPSTKVSFDLS
                     HVKSEAINQFTKRDFNLVDSNDTHMQFLKGNRNFYMDIFNPEESEEYHYANLDEKCQY
                     KNIGFICQNDAAAEIATKLTNEWLETLEAPKKKFLTVNIANLNAMKQNQEVLFQ"
     gene            complement(7114..7782)
                     /locus_tag="U0280_000946"
     CDS             complement(7114..7782)
                     /locus_tag="U0280_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEM2270900.1"
                     /translation="MNPVEQVISARQAEFQSAFEAAKQSATTFETKLNERLNETTTAK
                     TTSVLTVTDAELTRAREAYEALINQSDTNSAASASSTTTETPTTSTGESTNWNNYQIK
                     PISAENEGKYSDLIKTSAAKYGVPEALIKRVIQVESNFNPNVVSSAGATGLMQLMYGS
                     NRTDPATNIDAGTKQLAGYIKKYDGDLKLALAAYNAGPGNVRKYGGVPPFKETQNYLT
                     KIIG"
     gene            complement(7799..9100)
                     /gene="fliI"
                     /locus_tag="U0280_000947"
     CDS             complement(7799..9100)
                     /gene="fliI"
                     /locus_tag="U0280_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEM2270901.1"
                     /translation="MNWSPKTEAWQELKNTVPYIQKGKIHTVQEQVYISKGPQVKIGD
                     TVMVGENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVL
                     NASGDILNEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKI
                     GIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEDGLRKSVIVA
                     ATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIG
                     GKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTR
                     ELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQT
                     SDNAAIFTSKEKSYFIHQFLKQLRDESVTLEETSKLMETLV"
     gene            complement(9097..9789)
                     /locus_tag="U0280_000948"
     CDS             complement(9097..9789)
                     /locus_tag="U0280_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEM2270902.1"
                     /translation="MSLSNPRIPKGKVTLSDVKMELFYLDDIEETEEVESPYSKELEQ
                     LESHQKELEKHLSAIEIEQQKLANEKAALQAERQAIEELKREAETEIEANKQAFEKEK
                     TQMYLTITDFLWDESIDLAERIVHQAIDTRQIEVLPMLTEVIQKLPVAFDKLNVTTHP
                     ETLKALKEENTGTKYDWLLENIHWNFDMRLDYGEFTVEEEKEYFDYRITEIFQTLHKQ
                     NAERKILGGDKP"
     gene            complement(9776..10882)
                     /gene="fliG"
                     /locus_tag="U0280_000949"
     CDS             complement(9776..10882)
                     /gene="fliG"
                     /locus_tag="U0280_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEM2270903.1"
                     /translation="MAETLKETLEETNAELETVEVEETEEKTTTSADSGISRREKAAL
                     IIWSLDEQIATEVVDLLPDASKQRLAREMAKMKEMDGGAVEEATREFLGELELLSGGI
                     AKLDREHLQRLFPDMTTEELNQLIYGVEAESRIGETALDILREIDDVDSLFTIISDES
                     PQTIAMIASYMKPEEASKLLALLPEEKMINTVIGIASLEQFDSEVMQNVSNLLRIKLD
                     TMSNSSLNKTDGIKNVANILNNVTRGLERTIFEHLDAEQAELSERIKEKMFMFEDIIL
                     LDNMTLQQVLAEIQDNNKIARALKNEKEELKEKILSCVSKNRRDMITEELEVLGPIRL
                     SDVEQAQQDIANVVKNLEKDGKIVIQRGEQDVLI"
     gene            complement(10885..12537)
                     /gene="fliF"
                     /locus_tag="U0280_000950"
     CDS             complement(10885..12537)
                     /gene="fliF"
                     /locus_tag="U0280_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEM2270904.1"
                     /translation="MAKIKTMYSKLKNWHKGAILVGLFVVVTVLLLYMNTPKTEVTLY
                     KNLSETSQQQVTDQLAKMGVDYTVDKSGNILVDEKVETLVRDKFADLGIPYTGQDGND
                     ILLNSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTTIDSASVQLTLPESSSIFEEAS
                     QKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTKNGVISEADTSK
                     EEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFDEIKQNTEHY
                     PNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYTSEKSSETT
                     NYELDSTIQEIKKHPALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGLTPNMTTE
                     EAGADGEAAAAPTFEGTFQNGDVTIMPIQFLDNATPAEKDTTEKAAPASKAWIWWLAG
                     SLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQTDAF
                     DLSEPELKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE"
     gene            complement(12605..12901)
                     /gene="fliE"
                     /locus_tag="U0280_000951"
     CDS             complement(12605..12901)
                     /gene="fliE"
                     /locus_tag="U0280_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEM2270905.1"
                     /translation="MAIESINAASVLPKVTLGETAKTDNATGAGNTFTQMLDSMSDTQ
                     SNAQTSVSNLLTTGEGNASDVLIQMKKAESEMKTAAVIRDNVIESYKQLLNMQV"
     gene            complement(12918..13328)
                     /gene="flgC"
                     /locus_tag="U0280_000952"
     CDS             complement(12918..13328)
                     /gene="flgC"
                     /locus_tag="U0280_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEM2270906.1"
                     /translation="MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKR
                     VVLSEITPFETALTGTKGVKVSEISSDTGSVKRVYDPTHPNANEAGYVNYANVDMTAE
                     MTNLMVGQKMYAANTSALQANEKMMEKDLEIGKV"
     gene            complement(13340..13741)
                     /gene="flgB"
                     /locus_tag="U0280_000953"
     CDS             complement(13340..13741)
                     /gene="flgB"
                     /locus_tag="U0280_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEM2270907.1"
                     /translation="MENYTTHIGNYLNYLQTANQVVSNNIANANTPNFKASEASFEES
                     FGSSLRASGQNSTESAGNLTKTNTKHLAGTDIDETNAKVTTKSGSINEDGNNVNVTSE
                     MISLTKNNQMYALAISALNYNSSINTAARGK"
     gene            complement(13762..14043)
                     /locus_tag="U0280_000954"
     CDS             complement(13762..14043)
                     /locus_tag="U0280_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270908.1"
                     /translation="MNQAKTHLVELKALFHSTGQLNVTLEEYQAKLNELLKSTEHLPK
                     DTKEAILKETREVINKGILFTQKQLESTENAFSENKSRNAANLNYAKFF"
     gene            complement(14015..14401)
                     /locus_tag="U0280_000955"
     CDS             complement(14015..14401)
                     /locus_tag="U0280_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliS"
                     /protein_id="HEM2270909.1"
                     /translation="MQAWKRYTQNELNTSNPIKNTIYIYERCIIEFKKLDKALEQLHF
                     SEADLILDKMEKIFEELKLQLNPEAGQELYDNIFGLYEWISEQIRQMQLLKQPVNIDT
                     IIHVITQLKEGYEGVMKHESSKDTFG"
     gene            complement(14420..15709)
                     /locus_tag="U0280_000956"
     CDS             complement(14420..15709)
                     /locus_tag="U0280_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein 2"
                     /protein_id="HEM2270910.1"
                     /translation="MGSSIASSLMDPTQYYSQFISLQKASLEKAKTPYQNQISSYQSR
                     IDLYASLKNALSESLKTMSSFTTYESKTKLATSSNETSFTVSSTSSSVNGSYSIEVQN
                     LATADTYNKAVPDIEAKIGVSGTIKINGKEIKVDADSSMKNVMNSINSAGAKVNIYTL
                     GENMVVTSSTTGVENSIKFEGDSAVLDALGLVQNSPDHLAAEDAKLRINGATVTSATN
                     KVTNYIPGVTINLKKETTGAEKLTIQDQSDEKAASMITSFVNTYNALTSTMKTYTGKG
                     TILQASAVDLEANRALNNVFQHKKDGNTLFDFGISVDKEGVLKVDETAMKKMVAEDPT
                     AVERFFFGIGGIGDELYQSLNKTFGSTGFISDETTSMTNEINKLNLKLTDITSRNDTL
                     LTNITDQYNKWLEMMQAMQSDAMTLDALIDGMNSSNK"
     gene            complement(15721..16596)
                     /locus_tag="U0280_000957"
     CDS             complement(15721..16596)
                     /locus_tag="U0280_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein 3"
                     /protein_id="HEM2270911.1"
                     /translation="MRISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPG
                     ATAQILSYNHVLSQLNREKTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTS
                     DKDNMSQSAEEIKGLLDVLISVANSEDDGRYVFSGSSTSVKPFTTDKTTGEIIYNGTT
                     ENKKFRVTDTLEVEVFHDGSAMTDVFNNIQKIVDAMKTGDKDALSALQETNSKNIEII
                     TNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKSNVEEVNMPEAVSNLNKTSIAYQAAL
                     QSSVMVQKLSILNYM"
     gene            complement(16608..18128)
                     /gene="flgK"
                     /locus_tag="U0280_000958"
     CDS             complement(16608..18128)
                     /gene="flgK"
                     /locus_tag="U0280_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEM2270912.1"
                     /translation="MRLSDFNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTA
                     VYGDGGLLGGKQTGYGVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLF
                     GTPGKNTPSDNLDNFFTAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELET
                     TIAADTDAAIQDLNSLIKKLGSINKAIGNAGSNPPNDLLNQRDQLLSTMAGYAGISVS
                     AHPNNPDVYDVTIGGRLVVQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRV
                     NQNEIKSYQEKIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNR
                     DELLRQLEKFPGVTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWIL
                     NPAITSNADNKPFLGVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATST
                     ADTQALNSLSESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML"
     gene            complement(18148..18576)
                     /locus_tag="U0280_000959"
     CDS             complement(18148..18576)
                     /locus_tag="U0280_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Myocilin"
                     /protein_id="HEM2270913.1"
                     /translation="MQNELINQLEILIEKNVKATDAAILLGKLVQEENWIDAEERQLG
                     LQRELAALQNEYQALKTIIGEDNTLRTLQNTWTPAENAIIDERKKMLLEKENLLRVSV
                     TENQIRTEMQLAFSEHMVDVITGHHAETQAENNMMINETF"
     gene            complement(18586..19050)
                     /locus_tag="U0280_000960"
     CDS             complement(18586..19050)
                     /locus_tag="U0280_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaR family protein"
                     /protein_id="HEM2270914.1"
                     /translation="MNNVSIGQISQSKQTNVVRGMQELNQTQQLYFEQMKANGKKQTP
                     SLTEINELITNVTDKKSLVEMDMTVDNVLSYKKAVQTFLNFYVNNVMDYDNIESRHPK
                     YGFSQKMTILKQVEKQTNELDDVMNLIDTKTGHLDMLNRIGEITGMILDVVL"
BASE COUNT         4528 a         3727 c         3846 g         6960 t
ORIGIN      
        1 taatatagtt atgatacaaa aaggagcgag ctgaatggtt tttgcaaaaa aattagttgc
       61 tagtattgct gttttcattt cacttggatt catttatttc cgagaaagta cagctgtcgc
      121 atttgaaagt acaaatactg cttcctttct tccttctacc ggagatgcat tttcggtttg
      181 gccgattgtt attggagtgg tgcttgtcgc gcttgctgtc gtcctattta ttaagaagaa
      241 aatataaaaa atcgtttgag agcatgagat atgctttcaa acgatttttt tatgggtgac
      301 ttaggtaaat ggcttgcttt cccatagcag accagccttc ttcaagtaca cttcttttta
      361 cggcacggtt tttatgtcca tatgggtcat taatataaaa attgtcttta tcgaacccgg
      421 taattaccac actgtgcatc gaatacgtga ttttcttttt accttctttt gtttggacgg
      481 tttgccagtt tttgggtgca tggtagtcgg tggtagtgat aatccatact ggtgcgcctg
      541 tgctgagtac agtaatgatg tcttgaatgc tattcccgct aatatcgtgg acgtgtgctt
      601 cattaacgta tttagcagcc agattagcta tgggagcatg attcacgcct agaccagggc
      661 tatcgccgct aatgctccca acaaatgctt tatccggatt accgtgtaaa ccattttgtt
      721 cgattggtgt tgttgggaga ttattcgcta actcattttt cgttacacgc tttccattga
      781 attgtaagag cattgctaaa ctcgttactt cgcagccatt aaaaagcgta ggagcatcca
      841 tttgattcac tagtggcaca tctaatctta cattaaaagg ttcgttgtct aatttataaa
      901 cgactttggc gctttcgagt ttgacggttg gtgaataaaa ggtatatttc gtatttagaa
      961 gggtcaaact aaatatacac gctgtaatga caagcagtga ttttatccaa attcgcatta
     1021 tacatgcttc ctagacattt tctgctagga ctggctctcc tggatctttt gtttctgatt
     1081 ctggctcttc tgttacttcg accgcttctt cgctcacttc ggtattgaag ttggcgatat
     1141 acccttctaa tgaaccggaa attttttgca tttcttcgga gataacaact agctcgtcca
     1201 ctttcatttt gtttacttct gcgaattcaa gtgcagcagt ggatttttca ccgatttgat
     1261 tggaaatttc tgttacgtcg ctaattgacg tgttgacttc ttcaattccc gcagccattt
     1321 cttcggtttc ttgagataca ttttgcattt gagcggaaat atcattgaca cgattgagta
     1381 agtctgtgaa agttgcttcc gtttcagaaa tgattttttg gccagcttct gattcggaaa
     1441 gacctgtgtt cattacttcg atagtagttt ttgattctgt ttgaattttt ttcagaacag
     1501 tattaatgtc aacaacagca agtcgtgatt gttcagctag tttgcggact tcttcggcta
     1561 cgactgcaaa tccacggcca tgttcaccag cacgagcaga ttcgattgcc gcatttaggg
     1621 caagcaagtt ggtttggtca gcgatatttg taacggtatc cagcgctttt tccacttcac
     1681 caacgcggtt aactaattga gaaacaacgt ctgtacttga acgcataacg ccgctgatac
     1741 gatccatttg agacacgaga ttattgataa cggcaatgcc atcgttcgtt ttttctgcgg
     1801 aatcttttgt tagatcagat actttaagcg cgtattcagc cacattttga acgccgccag
     1861 tcatttgatc cattgcatcc gtgctttctt tcatgctgcc gatttgtgtt tggatctgtt
     1921 cacccatcat tttcatttcg atgtccattt ctgttgtcat tgcagaaata atttccgaac
     1981 taataataac gttgtcactg gaagatttaa cgtctgtaga agctttttta acgtcttcaa
     2041 tcattaatct taggttttcg ctcatttcat tcaagtcgtt tgtaatatca ccaagctcgt
     2101 ctctaccgtt ataagtgctg cggtacgaca aatctccact agctacttta tgtacagctg
     2161 tttgcaagtg tcggattcct tttagaatca ctcttgtaat ataagcgtta aaaatgaata
     2221 gagaaattag cacggcaata ataactgctg tgaatatgat actgattttt acaccaaagt
     2281 cagaaattgc ttgagaagaa ttttcgactt ctttgtagtt catttcattt aaaacgttta
     2341 attgtttagt tgcatcgtca aattttgttt tgacgttttg gtagtatctg ttttgcgctc
     2401 caagtaattc tgcgtcgtct agtgcgcttg atgtgtcact gattactgag gatgcggatg
     2461 atttcatgtc cgctagtttt tcttcaaagt acgctaattg ttttttatct tctgctgtta
     2521 aattggcttt tttgaaatta tgaattgctt ggtcattttc ggcataaaga tcatcaatat
     2581 cttttataag agctgatttt ccgttaatag tgtcgaacat ggtcaggatg tcgatattga
     2641 tttgcgccat gtttgtttgg atttttgcga tttctttcat cggtgcgaca ttattatcaa
     2701 ccatattatc tgaaagtgtt gctacatgac gaaagccaag aaagctagtc gcgccaagtc
     2761 cgattaacat gatggtcgtt ataacaatat tgatgcttaa ttttgttttc aatttacgat
     2821 ttttaattaa attcacccat tccacactcc tattctctaa ttctaattta ttatctcata
     2881 ttttttaaaa aaactccata ttttattgta aaataattag ttttaataaa aaacgttata
     2941 ataattagcg agaatcggca tgaaacgggt gataatgtta tttttttatt tgttttttat
     3001 aaaaatctgc gtaaaatggt tttaagtggt ggcatttttg cgaaacgatg gtcttctaag
     3061 actgattgga tttcgaattt agtataaccg agcgcttcgt ccatcacgat tttaccaggt
     3121 agtggagcgg ctgcactgtc cacggaaacg tcgatgatta ctggcttagt tgctagttta
     3181 gcgtttccga aagcagcttc taggtccgcc attttttcta ctcggaaacc aattcctcca
     3241 caactttcgg cgaattttgc gtaattgatg tctggtagat cgatggcgta gtttagttca
     3301 ccagctgatt gttgttcata tttaatgaat gaaagttgtt ggttgtttaa cacgacgaca
     3361 atcattggca tgtttaaacc tactgcagtg acgaaatctt gcatgaccat ggaaaagcct
     3421 ccatcaccga cgatggcgat tgcttggcgg tctgggaatg cttttttggc agcgatagct
     3481 ccaggtaaac cgcagcccat agtaccaagc cacgcggaaa cgataaagtc attttgtggg
     3541 gttaaatgta aataacgagt gctccaaaca gttgcagttc ctacgtcgat agagaaaatg
     3601 gcatctttat cagcgatttt ttggatgttc gccattacga cttctggggc gattggatcg
     3661 gttgtttgtg cgatgtcttc ttctaaccat ttccaccatt cttgcatgtt ttcttggcat
     3721 gcttgaagga atttacgctc ttctacaggt gcggttttcg cggttaaatt accgatgatt
     3781 tctgcggcat cgccaactaa accaactgtt gcagggaaac gtttgctgat tttggctggg
     3841 tcaatatcga tttggatgca gtcggctttt tttggtaaat aatcgctata agggtaatca
     3901 ttcccgaaca ttaatagtaa gtcagtttct tgcatagctt catatgctgg tttggttccg
     3961 attttaccaa ggtttccgag tgcatttgga tggttatctg gaacaatggt ttttgctggt
     4021 aaggaatgaa taatcgggat tttcaatttt tctgagaagg cgattagttc tggtccagcg
     4081 tgtttagtcc ctaatccagc taagataact ggtttttccg ctttttcaat ccgtgctacg
     4141 gcttcctgta ttgccgcttc atctagtttt ggattttctt gttcgaattt gactgttttt
     4201 gcttcaaggc tcgctttaat tacttgtgac gggatatcat ttggaatcgt taggacagcg
     4261 acgccttttt ctttataagc ggtgcggatt gcttcatcaa ccacatccgc gagtgtttcg
     4321 gcattatcaa tttgtttatt atacacggca acatcttcaa aaatcgctgg taaattgact
     4381 tcttggaaaa agccggtgtt taagacgtcg gttgtcactt gcccagcgag tacgagcatt
     4441 ggcacatgat ccatttttgc atcatacatg ccgtttagaa gatgaattgc tccggggccg
     4501 ccgatagata atgcgacacc aattttgcct gttaatttgg tatatgctgc tgcggctagt
     4561 gtcgccactt cttcgtgccg aacgtgaata aattcgattg cttcttgttc ttttcgtaag
     4621 gcatcaacta ctgtatcaat cgaatcacca ggtaaaccat atacgtggtc aatcccccaa
     4681 ttttttaatg tttgtacgag tgtttcactt gcttttactt ttttcatttt actttctcct
     4741 cccatggatg ttttctctaa tgtccaatag ttttcgttta ccctgttttt aaaagagtat
     4801 tcataaaaga gaattgacga actattcaga agtgcttata atgaaggcaa ggtggtgatc
     4861 aaagagatgc aaacaaaatt gcactgctct cgactttcta acaatggctt taggattgtt
     4921 tagaaagtaa gagtgaaata aactcttcaa tccttcagct agtttaacca acattaaact
     4981 attaaaggag aattataatg aaagagttta tcgagccata ccaatataat tttatcaaaa
     5041 atcaattagc caatgtttca cgcgcatacc ggtccgccaa tgatacttcg actttgaagg
     5101 cgttaaaatc gttaacagag gagaaaatca atgaactatt cccggaaagc gtgctagagg
     5161 agcataagga actgtttagc gagctccatg cgattacttc aaccaaagaa gcagagccgt
     5221 ttttagatgg gttaaaagcc tatgtgattc ctttcgcgcc acctagtgat gtgaaactta
     5281 aaaaactttt tgcgaaaacg aaaaaattaa aaattcccgc ctggtctaaa ctagatttgc
     5341 gcgactatac tttttacggc tggaatgata tcgctcagca acgtaaatat atcgtgactt
     5401 acgaggacgg aaatttggtc ggcgtacaag gaactatttc gacagagatt caaaagggtg
     5461 tttgttcgat ttgtcactcg cattccaaag tatcgctctt tatggcgaaa acgaaatctt
     5521 cgagtgacgg catttatacg acaaatggta attacatttg ctacgatagt gatgtgtgta
     5581 atcagcaaat aaaaacccac gaaacgttag atgaatttat tgaggttgtt aagaaacgca
     5641 aataaaaaac agaaagtctc tcattttttt gagaggcttt ctgtttttta tttaatcgaa
     5701 tctcgcaatt tctgacgttg tttatccatc catgtttctt ccggaaattc acttagtaag
     5761 ttgtcggcga attccgctag gtcatctcct acaacggctt ttaattctag gttgtcggct
     5821 gcggcgtttt cgaacatctc gagtacattc tttaggattt caaacatccc agcgcctttt
     5881 gcaaagttcc ataaataggt ttcgatagct ttcattgcgg ttttgtaatc ttctggcaaa
     5941 gcggctattc gttttttgta ctgtttgtaa tctcgttttt cttcgcggta ttttttgtac
     6001 caattaaaca ttacgcttgc cctcctttaa cctgcatgat ttttccttga ataaaatccc
     6061 aacgcttcca aaaaatagct agttcttctt caccagctgg gctcaatgtg taaaattttc
     6121 gtggtggacc taattctgat tttttctttt ctatctcgac taatcctttt ttctccagac
     6181 gaacgagaat ggtgtagacg gttccttcga cgatttcatc aaagcctagg tcattgaggt
     6241 atttggtgat ttcgtagccg tatgtttctc ctctagaaat ccgctccaaa atcattcctt
     6301 ctaaactacc tttgagtaac tcggttagtc ctttcacttg aattcactcc tctactagtt
     6361 gttactaggt acaagtatat agtaatacaa agtaggttag ttgtcaacct gtttgtataa
     6421 aaaaacctgc tctctttggc gagaacaggt tttttctatt gaaaaagtac ttcttgattt
     6481 tgtttcatcg cgtttaaatt agcaatgttg accgttaaaa atttcttttt cggagcttct
     6541 aaagtttcga gccattcgtt tgttaatttt gttgcgattt cagctgctgc atcgttttgg
     6601 caaatgaagc cgatgttttt gtattggcat ttctcatcaa gattagcgta gtggtattct
     6661 tcgctttctt cgggattgaa aatgtccata taaaaatttc gattgccttt gaggaattgc
     6721 atgtgggtat catttgagtc tactaggttg aaatcgcgtt tggtgaactg attgatcgct
     6781 tctgatttta catgtgatag gtcgaagctt acttttgtgc ttggtttttc taggttttga
     6841 agctggcttg cttcaaatga tttagctgct tcttggtcgg atgtgaatgc ttggagctgt
     6901 tcttcgacac gattcatttt agtttcaaaa tccagttcgt ttaggagatt ttcggtttgt
     6961 ctgatgacgt taattgcttc ttcaaattgg tcatttttta tgtaggaagt cactttttcg
     7021 gctgcttcaa ttttgatttc ttgttgcatt gctacagtca tatcgcgcca tgattcccac
     7081 ttttgttgcc agtttcccat ggtttattct cccttaccca ataattttcg ttaaatagtt
     7141 ttgtgtttct ttgaatggtg gtacgccgcc atatttgcgg acatttcctg gcccagcatt
     7201 ataagctgct aatgccagtt tgagatcgcc atcatatttt ttaatataac ctgccaattg
     7261 ttttgttcca gcgtcgatat tagttgctgg gtctgtacga ttcgagccgt acatcaactg
     7321 cattaaacct gttgcaccag cacttgatac aacgttcggg ttaaaattgg attctacttg
     7381 gatgactcgt ttgatgagtg cttctggaac gccatatttt gcggccgaag ttttgattaa
     7441 atcactatat tttccttcat tttccgcact gattggtttg atttggtagt tgttccagtt
     7501 tgttgattcg cctgttgatg tagtgggagt ctcggttgtt gtgcttgaag cagacgcggc
     7561 agaattggtg tcggattgat tgattaatgc ttcatatgct tctcgagcgc gcgtaagttc
     7621 ggcatctgtg acagttagta cactagttgt tttggcagtt gtggtctcat ttaagcgttc
     7681 gtttaatttt gtttcaaaag tggtagccga ttgtttcgct gcttcgaacg cgctttgaaa
     7741 ctcggcttgt ctagcactta ttacttgttc tactggattc atccacggca ctcctttgtt
     7801 atactaacgt ttccatcaac ttactcgttt cttcaagcgt gacactttca tcccgcaact
     7861 gttttaaaaa ttgatggatg aaataagact tttctttact tgtaaaaatc gccgcattgt
     7921 cgctcgtctg ttcgattgta ccaagtttga aatatagttc attttcttga taaatactca
     7981 tccattcgcg aattttcgaa gctgttttcc actggctttc tggaacaatt tcttccatta
     8041 cccgactaac ggagccgagg acatcaatgg caggatagtg gtttttggtg gccagttcac
     8101 gtgtgagaac gatatgtcca tctaaaatcc cccgcgctag atcggggact ggaccattca
     8161 tatcatctcc atcaacaagc actgtataaa taccagtgat cgagccgttt tgcgttttac
     8221 ctgaacgttc tagcaatttc ttcatatatg attccattag caaggttttg ccgccgattg
     8281 gtaagtcttt gacggcgata tcgacgcttc ttcttgcatc agcaaaacga gtgacagaat
     8341 ccatcattag aaggacggtt tttccttggt cgcggaaatg ctcggcaata gaagtggcta
     8401 gtttggcggc gcgtagttgc ataagatggc tttcgtccga ggtagcagca acaatcacgc
     8461 ttttgcgcag tccgtcttct ccaagatcct tacgcaagaa atcttttact tcacggccgc
     8521 gctcgccgac taagccgatc acattaatgt ctgctttggc gttacgagca atcattccaa
     8581 gtaaagtaga tttaccaaca cccgatccgg cgaaaatacc aattttttga ccgattccaa
     8641 tcgttaacat cccgtcaatt gctttgatgc ctgtttcgag cgtatcagtg atttctgctc
     8701 gactaaaagc atgaattggt ggagcttcaa gcggcatttt ttgtttaaat ttagccactc
     8761 cagcttcttc gtttaaaata tcgccggatg cgttgagtac ttttccaagg aggtattcgt
     8821 ctgccgggat tgtaattttc gtatccgtta cgtacaccca atcaccgtat gccactttgt
     8881 cgctttgatt aaacgggagt agcatgttgt tttctttttc aatagaaatt acttcgcaga
     8941 gcactttatt ttcaccgacc atgacagtgt caccaatttt cacttgaggg cctttggaaa
     9001 tatagacttg ttcttggact gtgtgaattt ttcctttttg gatgtatgga acggtgtttt
     9061 ttagttcttg ccaagcttcg gtttttggcg accagttcac ggtttatcgc ctcctagaat
     9121 tttccgttcg gcgttttgtt tatgaagtgt ttggaaaatt tcggtgatgc ggtagtcgaa
     9181 gtattccttt tcttcttcta cagtaaattc gccgtaatcg agtcgcatat cgaagttcca
     9241 atggatattt tctaaaagcc agtcgtattt tgtgcctgtg ttttcttctt ttagagcttt
     9301 taaggtctct ggatgggtag tgacgtttag tttgtcgaaa gcaactggga gtttttgaat
     9361 gacttcagtt agcattggta agacttcgat ttggcgcgtg tcgattgctt ggtggacgat
     9421 tctttctgca agatcgatac tttcatccca aaggaaatcg gtgatagtta gatacatttg
     9481 tgttttttct ttttcaaaag cttgtttgtt tgcttcgatt tctgtttcag cttcgcgttt
     9541 taattcttca atggcttggc gttcagcttg aagtgctgct ttttcgttag ctaatttttg
     9601 ctgttcgatt tcgatggcag ataggtgttt ttccagttct ttttgatgac tttctagttg
     9661 ttcaagttct ttcgagtagg gtgactcgac ttcttctgtt tcttctatat catccaaata
     9721 aaacagttcc attttcacgt cggataaagt gactttacct tttgggattc gcggattaga
     9781 taaggacatc ctgttccccc cgttggataa ctattttgcc atctttttcc agatttttaa
     9841 cgacattggc gatatcttgt tgggcttgct cgacgtcaga aagtctgatt gggccaagaa
     9901 cttctaattc ttcggtaatc atatcgcgac ggtttttcga tacgcaagat agaatttttt
     9961 ctttgagctc ttctttttcg tttttgagtg ctcgagcgat tttattgttg tcttgaattt
    10021 ctgccaacac ttgttgcaag gtcatgttat caagtagaat aatatcttca aacataaaca
    10081 ttttctcttt gatgcgttcg gaaagttcgg cttgttcggc gtcgagatgt tcgaaaattg
    10141 tacgttctaa acctcgggta acattgttta agatatttgc gacatttttt atgccatctg
    10201 ttttgttcag tgagctattc gacatggtat caagcttaat tcttagtaaa ttagaaacgt
    10261 tttgcatgac ttcgctatcg aattgttcta ggctcgcgat accaataaca gtgttaatca
    10321 ttttttcttc cggtagtaag gctagtagtt tcgatgcttc ttctggtttc atgtatgaag
    10381 ctatcatcgc gatggtttgt ggcgattcgt cgctaataat tgtaaacaag gagtcaacat
    10441 catcaatttc tcgtaaaata tctagcgcgg tttcgccgat acgtgattct gcttctaccc
    10501 cgtaaatgag ttgatttagt tcttccgtcg tcatgtctgg gaacaagcgt tgtaagtgtt
    10561 cgcggtcgag tttagcaatt cctcctgaaa gaagttctaa ttcccctaaa aattctctag
    10621 ttgcttcttc tactgcgccg ccgtccattt ctttcatttt ggccatttca cgtgcaaggc
    10681 gttgtttgga tgcgtcaggg agcaaatcta ccacttcggt cgcgatttgt tcgtcgaggc
    10741 tccaaataat aagtgcggct ttttcacgtc ttgaaatacc tgaatctgct gaagtagttg
    10801 ttttttcttc cgtttcttct acttcgacag tttctagttc agcatttgtt tcttctaagg
    10861 tttctttgag tgtttctgcc attgttattc ctgcctttca ttgagccatt tttggatgac
    10921 tgctgcggcg cgccctgggt cttctttggc catttcaccg agtttatttt tcaagctttc
    10981 tttgcgggct tttaattctg gttctgataa atcgaatgca tctgtttgga agttgaaatc
    11041 tggatgttct tctgggttga tgattgcttc ttccgctgga atgtagtctt tttcttctgg
    11101 ttctaatgct tcttctagtt gttctttacg tttaaggaag ataatgtagg cgataattcc
    11161 agctgcaatg atggcgaaga gtaaacttcc tgcaagccac caaatccagg ctttgcttgc
    11221 tggtgctgct ttttctgttg tatctttttc tgctggcgtg gcgttgtcta agaactggat
    11281 cggcatgatg gtaacatcgc cattttggaa agtaccttcg aatgttggtg cggctgctgc
    11341 ttctccgtct gcgcctgctt cttcggttgt catattaggc gttaatccag ctgaaactcc
    11401 aattgctttt gtgaattcgg ccatgtcaac accattttta tttaaagcat tttgatcaac
    11461 ccagacaacg acatttgtct ttgctagggc tgggtgtttt ttgatttctt ggatggtgga
    11521 gtctagttca taattcgttg tttcacttga tttttcgctt gtataggtgt tcgtatcatc
    11581 accattttgt tccgtgtaat ttggtacgtc agcgtttgag gcggttcctg attccgtcgt
    11641 attcgcggaa ccttttgatg tgtctgttga tgtgtctttt tggttgctac gtacttttcc
    11701 gtcgtttgga taatgttccg tattttgttt gatttcgtca aaattaaccg agacatttgt
    11761 attcacgcgg aaattatcta gggcaaaaat gctggaaagt gtcccttcga tatctgtttt
    11821 cacatttttt ccaatcgcat tttggatatc gacttcattt ttataagcag aactgccttc
    11881 ttctttggat gtgtctgctt cagagataac accatttttc gtatcgataa tcgctacgtc
    11941 atcactagca acatttggta cggctgcgct gacggtgcgc tgaatgccga gaacttgttc
    12001 gcttgttagt gtttgattgt ttttggtttt gagtgttact gcggctgttc ctttttggct
    12061 tgcttcttca aaaatcgaac ttgattctgg taaagttagc tgcacggagg cgctatcgat
    12121 ggttgttcca tagctttgaa cgatttcttt ttctaaattg actttcgtac caactttttc
    12181 ttgcattttt ttatcttctt cactggctcc aagtgagctg tttagtagaa tgtcattgcc
    12241 atcttggcct gtgtatggaa tacctaggtc cgcaaatttg tcacgaacga gtgtctccac
    12301 tttttcatcg actaaaatgt taccgctttt gtcgacggta taatcaacgc ccattttggc
    12361 taattgatcg gtgacttgtt gttggcttgt ttcggataga tttttataaa gagtaacttc
    12421 tgttttgggc gtgttcatgt agagtaataa caccgtgact acgacaaaaa ggccgactaa
    12481 aatcgcgcct ttgtgccaat tcttcaattt cgaatacatt gtttttattt ttgccatctt
    12541 aaaaacttcg ctccattttt ctcgtgtgga cgattgacta aaactccccc gactagtcta
    12601 accgctacac ttgcatattt aaaagctgtt tgtagctttc gattacatta tcacgaatga
    12661 ccgcagcagt tttcatttct gattctgctt ttttcatttg aatgagtaca tcactcgcat
    12721 ttccttcgcc tgttgttaaa aggttcgata cggaagtttg cgcgtttgat tgtgtatcac
    12781 tcatactatc cagcatttgc gtgaaggtat ttccggcacc tgtcgcattg tctgttttcg
    12841 cggtttcacc aagcgttact ttaggtaaga cacttgctgc attaatactt tcaattgcca
    12901 tttcttaaaa cactccttta tactttgcca atttctaaat ctttttccat cattttttca
    12961 tttgcttgta aggcggaagt gtttgccgcg tacatttttt gtccgaccat taaattggtc
    13021 atttctgctg tcatatcaac attcgcgtaa ttgacgtaac ccgcttcatt tgcgttagga
    13081 tgagttggat catagacacg tttgacgctt cctgtgtcgc tcgatatttc gcttacttta
    13141 acaccttttg ttccagttag agctgtttca aatggtgtga tttcggataa tacgacgcgt
    13201 tttctaagga aaggtgtctc gccaggtgcg gcgcttgaat cggcgttcgc gatattattg
    13261 gagcttactt ccatccattg tttcgcagca tttaacgcgg agccacttgt gtttattcct
    13321 tcaaacatgg tttatcacct tactttccac gggctgctgt gttgatggat gaattatagt
    13381 tgagtgcact gatagcgagc gcgtacattt ggttattttt tgttaagcta atcatttcag
    13441 aagtgacgtt gacattgttg ccgtcttcgt tgatggagcc gctcttggtc gttacttttg
    13501 catttgtttc gtctatatcg gttccagcta aatgttttgt gtttgttttc gttaggttgc
    13561 cggccgactc ggtgctattc tgaccagatg cgcgcaaact tgagccaaat gattcctcaa
    13621 aactcgcttc acttgcttta aaattgggcg tattggcatt ggcgatatta tttgaaacta
    13681 cttggttggc tgtttgaaga taattcaagt agttgccaat atgcgtggta taattttcca
    13741 cttgtcattt ccttctttct tttagaaaaa tttcgcataa ttcaagttag cagcattgcg
    13801 acttttattt tcagaaaagg cattttcagt ggattctaat tgtttttggg tgaaaagaat
    13861 acctttattt ataacttccc ttgtttcttt taaaatggct tcttttgtat cttttggtaa
    13921 atgttcggtg ctttttagta gttcatttag ttttgcttgg tattcttcga gggtaacgtt
    13981 taattgcccc gtcgagtgaa acagtgcttt taactcaacc aaatgtgtct ttgcttgatt
    14041 catgtttcat cactccctcg tagccttctt taagctgcgt gataacatga atgatagtat
    14101 caatattaac gggttgtttt agtagttgca tttggcgaat ttgttcagaa atccattcat
    14161 ataaaccgaa aatgttatcg taaagttctt gcccggcttc tggatttaat tgtaatttta
    14221 attcttcaaa gattttttcc attttatcaa gaataagatc ggcttcggaa aaatgtagtt
    14281 gttcgagtgc tttgtccaat tttttaaatt caataataca acgttcgtat atataaatgg
    14341 tgtttttaat gggattgctc gtatttaatt cattttgcgt gtatcgtttc caagcttgca
    14401 tttttttcac ctaccatttt tatttattag aactgttcat gccatcgatg agggcgtcta
    14461 gcgtcatggc gtcgctttgc atagcttgca tcatttcaag ccatttgttg tattgatccg
    14521 taatattcgt taataacgtg tcatttcggc tagtaatatc ggttaacttg aggtttaatt
    14581 tattgatttc attcgtcatc gaggtcgttt catcactgat aaagcctgtc gagccaaatg
    14641 ttttgttcaa agattgatac agttcatcgc caattccgcc aatgccaaag aaaaatcttt
    14701 cgacggcggt tgggtcttca gctaccattt ttttcattgc agtttcatcg acttttaaaa
    14761 cgccttcttt gtcgacactt attccaaaat cgaataatgt attcccatct tttttatgtt
    14821 ggaatacgtt gtttagggcg cgatttgctt cgaggtcgac agcagatgct tgtaaaatcg
    14881 ttccttttcc cgtgtaggtt ttcattgtgc ttgttagtgc attgtatgta tttacaaaac
    14941 tggtgatcat gctggctgct ttttcatcgc tttggtcttg gatggttaat ttttcagcgc
    15001 cagttgtttc ttttttgagg ttgatggtca cgcctgggat gtagttggtt accttgtttg
    15061 ttgcacttgt aacggtcgct ccgttgattc tgagtttggc gtcctctgca gctaaatggt
    15121 ctggggaatt ttgtactaat ccaagtgcat cgagaacagc cgaatcgcct tcaaatttaa
    15181 tactgttttc gacaccggtt gttgaagaag ttacgaccat gttttcgcct agcgtgtaga
    15241 tattcacctt agctccggcg ctattgatgg agttcatcac atttttcatt gagctatctg
    15301 catcaacttt aatttctttg ccattgattt tgattgtccc gcttacaccg atttttgcct
    15361 caatatcagg tactgcttta ttgtaagtgt ctgcggtcgc caagttttgg acttcgatag
    15421 aataactgcc gttgacggaa ctgctcgttg atgaaacagt aaaactcgtt tcgttggatg
    15481 aagtcgcgag tttggtttta ctttcataag tcgtgaaaga gctcatcgtt ttcagcgact
    15541 cagataaagc atttttcaaa ctagcataaa gatcaatccg tgattggtag ctggaaattt
    15601 ggttttgata aggcgttttc gctttttcca aactagcttt ttgaagactg ataaattgcg
    15661 aatagtattg cgttgggtcc attaaactgc ttgcaatcga acttcccact tggtctcacc
    15721 tcacatataa tttagaatgc ttaatttttg taccatcaca ctggattgta gtgcggcttg
    15781 gtatgcaatc gatgttttat ttagattact tacagcttct ggcatattga cttcttcgac
    15841 attggattta cgttcggaaa agtcgacaat tttgctagaa agtacgttat cataggctgt
    15901 tacgccgttt ttctgtccgc cgatatttgt catggaattg gtgatgattt caatattctt
    15961 gctgtttgtt tcttgcaagg cagacaaagc atccttatcg ccagttttca ttgcgtcaac
    16021 gattttttga atgttgttaa acacatccgt catcgcacta ccatcatgga aaacttctac
    16081 ttctaatgtg tccgttacgc ggaatttttt attttctgtt gttccgttat agatgatttc
    16141 tccagtggtt ttatctgttg taaatggctt cacgctcgtg ctagaaccac taaaaacata
    16201 tctgccatcg tcttctgagt tagcgacaga aataagaaca tccagtaaac ctttgatttc
    16261 ttcggctgat tgcgacatat tgtctttatc gctcgtgccg ttaatcgctt gcaagactaa
    16321 agcatttacc cggttcatcg atgtagacat ggatgaaagg gatgtttcag ccgtatttaa
    16381 taatgatttt gcttcggtta cgtccgtttt ttcgcgattt agctgactaa gcacatgatt
    16441 ataggataaa atttgcgctg ttgcaccagg attttcgctc atcgattcat actttttccc
    16501 agaagatact tgtaattggt attttgcaag gtttcctgag acattattca gctgattaat
    16561 tattgaattt gcttgttgat tcgttgaaat tcgcattatt ttcctcctta taacatggct
    16621 aagagagctt tcatcatatc gttcactgtg ttcatggctt tcgtattggc cacataataa
    16681 ctttggtatt gcatgatatt tgtcatttcc tcgtcaatat taactccttc aagagatgat
    16741 tttgattcag aaagagaatt taaagcttgc gtgtctgccg tagaagttgc gctactttta
    16801 ctagcgtccg tcgccacttc ggtaatgatt ccgtccatga aactcgggaa agttgttcct
    16861 tgaatgtttt tgtctgtttt caaggaagcg atatccgccg cgataactcc tagaaacggc
    16921 ttgttatcag cgttacttgt gattgcagga ttcaggatcc atttgccaga gctttgggtg
    16981 aaaattggaa tggaaaaatc attcacatcg gttacatatg tactcgtgcc aagcgtgtca
    17041 atcgcgtggt caactccgcc aatcgtcagc gtatcaccag aacgagtcac accagggaat
    17101 ttttctaatt gacgcaaaag ttcatcgcga ttgctcagta gtttttcgtc gttcggattc
    17161 gctttgagcg catcattgat tttttgcaaa tcgtccattg ttttattgac gtttttgact
    17221 tgaatatcat ctaatgcttt tgctaggctg ttcgaaaaag tttcgatttt ttcttggtac
    17281 gatttaattt cattttggtt aacacgaacg gaagcgatga tggaaccttc tggcatgttg
    17341 agtttttgac cgtctacgga aaattcaaag ccagtcgcgg ttcgcgttga tgtgatttcg
    17401 gtcgtttcat caccttggac aacaagacgt ccgccaattg tcacatcgta cacatctgga
    17461 ttattcggat gggcgctcac ggaaatccca gcatagccag ccatcgtact aagtagttga
    17521 tcgcgttggt tcagcaaatc gttcggtggg ttggagcctg catttccgat tgctttattg
    17581 atactgccta attttttaat taatgaattt aagtcttgaa tcgcggcatc tgtatctgct
    17641 gcaatggttg tttctaattc ttttaagccc gaatgaagtt ggtttaattg atccgtaaaa
    17701 atcgacatac tggataaaag tgccgttgta ttcgttgctt ggtcaggatt tttcgctaat
    17761 gctgcccaag cggtgaagaa attatctaaa ttatcacttg gtgtattttt ccctggagta
    17821 ccaaataaat taagtgcttg accgagcgcc ccactttgat ataacgaagc ggattgtttg
    17881 gcgatttgat tattgtattg tgtcgtaagt gctgtatttg ttagacgttt aatgtctgtc
    17941 actttgactc cgtagcctgt ttgtttccca ccaagcagac caccgtcacc gtaaaccgcc
    18001 gtctgatcca cagcttgtct tatgtatcct ggcgtattca tattactaat attttgctga
    18061 gcgaccatat tagcgatttg cgccgctgac atgcccgata atgacgtatt aaaatcactt
    18121 aaacgcacaa aaaatccctc cgtttactta aaaagtctcg tttatcatca tattattttc
    18181 tgcttgtgtt tccgcgtgat gtcccgtaat aacatccacc atatgttccg aaaaagccaa
    18241 ttgcatttct gttctaattt ggttttccgt aacacttact cgtaaaaggt tttctttttc
    18301 aagtagcatt tttttccgtt catctataat ggcattttcc gcaggtgtcc aagtattttg
    18361 gagcgttcta agcgtattat cttcgccaat gattgttttt aaagcttgat attcgttttg
    18421 caaagcggca agttcgcgct gtagtcctag ttggcgttct tctgcatcaa tccagttctc
    18481 ttcttgcact aattttccga gtaaaattgc tgcatcggtc gctttgacat ttttttcgat
    18541 taaaatttct aattgattga ttaattcgtt ttgcattccc atcacctaca atacgacatc
    18601 gagaatcatg ccagtaatct caccaatacg gtttagcatg tctaaatgtc cagtttttgt
    18661 atcaattaaa ttcattacat catcgagttc attggtttgt ttttctactt gctttaaaat
    18721 cgtcattttt tgcgaaaacc cgtattttgg atgacggctt tcgatattgt cgtaatccat
    18781 cacattattc acataaaaat tcaaaaatgt ttggactgct tttttatagc tcaaaacatt
    18841 atctaccgtc atatccattt caacgagtga ctttttatct gtgacattcg tgattagttc
    18901 gttaatttca gtcagggaag gagtttgttt cttgccattt gccttcattt gttcaaaata
    18961 aagctgttgt gtttgattta attcttgcat tcccctaact acattcgtct gtttggactg
    19021 cgaaatttgg ccaattgaaa cattattcat cctttttccc c
//
LOCUS       DASDXX010000034        18554 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.034, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000034 DASDXX010000000
VERSION     DASDXX010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18554
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.034"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            67..2580
                     /gene="secA"
                     /locus_tag="U0280_000961"
     CDS             67..2580
                     /gene="secA"
                     /locus_tag="U0280_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEM2270915.1"
                     /translation="MAGLLKKIFESGKKDVKYLERKADEIIALADETAALSDDALREK
                     TVEFKERVQKGETLDDLLVEAFAVAREGAKRALGLYPFKVQLMGGIVLHEGNIAEMKT
                     GEGKTLTATLPVYLNALSGEGVHVVTVNEYLAHRDAEEMGVLYNFLGLSVGLNLNALS
                     STEKREAYACDITYSTNNELGFDYLRDNMVVYKEEMVQRPLAFAVIDEVDSILVDEAR
                     TPLIISGEAEKSTILYVRANTFVRTLTEEEDYTVDIKTKSVQLTEDGMTKGENYFDVE
                     NLFDLENTVILHHIAQALKANYTMSLDVDYVVQDDEVLIVDQFTGRIMKGRRFSEGLH
                     QALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEI
                     PTNKVIIRDDRPDLIYTTIEAKFNAVVEDIAERHAKGQPVLVGTVAIETSELISSKLK
                     RKGIKHDVLNAKQHEREADIIKHAGERGAVVIATNMAGRGTDIKLGEGTIEAGGLAVI
                     GTERHESRRIDNQLRGRSGRQGDPGVTQFYLSMEDELMRRFGSDNMKSMMERFGMAED
                     AIQSKMVSRAVESAQRRVEGNNFDSRKQVLQYDDVLRQQREVIYKQRYEVINAENSLR
                     EIIEQMIQRTVNFIVSSNASSHEPEEAWNLQGIIDYVDANLLPEGTITLEDLQNRTSE
                     DIQNLILDKIKAAYDEKETLLPPEEFNEFEKVVLLRVVDTKWVDHIDAMDHLRDGIHL
                     RAYGQIDPLREYQSEGFEMFEAMVSSIDEDVARYIMKAEIRQNLEREQVAKGEAINPA
                     EGKPEAKRQPIRKDQHIGRNDPCPCGSGKKYKNCHGKEA"
     gene            2665..3766
                     /gene="prfB"
                     /locus_tag="U0280_000962"
     CDS             join(2665..2736,2738..3766)
                     /gene="prfB"
                     /locus_tag="U0280_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959056.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEM2270916.1"
                     /translation="MELAEIRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPN
                     FWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELEKDI
                     KAYMATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGF
                     KVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS
                     VDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSE
                     RSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVK
                     DHRTNYETGNIQAVMDGDLDEFINAYLRSRIG"
     gene            3772..4635
                     /locus_tag="U0280_000963"
     CDS             3772..4635
                     /locus_tag="U0280_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2270917.1"
                     /translation="MANKRKKQPLSPVVSKLIEYIYVIIGAALIALAFNVLLLPNHVA
                     SGGVSGISTIINYLTGWNPAFIQWAFNIPLFLAGLFFLGYQFGLKTFVGTMLLPFFVY
                     LTQGLEPWTHEPLVAALFGGVLVGMGLGIVFRGKASTGGTDVAAQILHKYSHLTLGIC
                     VALIDGFVVISAMFVFDIESGLYALVGLFATSKTIDLVQVGLNQSKTVFIISENQEAI
                     RQAILFKIDRGITRLSAKGGYTEDDKQILLCVIAQSEFSRLKEVIKEIDPEAFVVVMS
                     ASEVMGEGFTS"
     gene            5142..5828
                     /gene="ftsE"
                     /locus_tag="U0280_000964"
     CDS             5142..5828
                     /gene="ftsE"
                     /locus_tag="U0280_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEM2270918.1"
                     /translation="MILMEDVYKKYPNGITAANGLNINIGEGEFVYVVGPSGAGKSTF
                     IKMIYREERATKGKIIVDKFDLINMKNREIPYLRRNVGVVFQDYKLLQSKTVYENIAY
                     AMEVVETEPSVIKERVMEVLDLVNLKHKVRMLPDELSGGEQQRISIARSIANMPKVLI
                     ADEPTGNLDPDTSWEIMNILEEISNRGTTIVMATHNKEIVNTLKHRVVAIENGRIVRD
                     EQQGEYGYEI"
     gene            5818..6702
                     /locus_tag="U0280_000965"
     CDS             5818..6702
                     /locus_tag="U0280_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2270919.1"
                     /translation="MKFRTVGRHIRESFKSLYRNGWMTFAAASAVTVTLILVSVFFAI
                     LINMNKLATDVENNVQINVHISLSADKKQQQELEKNIEKIDGVDSVSFSSKDDELKKL
                     VGAYGKNFELFKQDNPLYDVFVVEAKEPTQTKTIAKKVEKLQYVDNVEYGEKTVDKLF
                     DTLKWGRYAGIILSIGLLLTAMFLISNTIKIAIFSRRREIEIMKLVGATNWFIRWPFV
                     LEGAWLGLIGSIVPVVLTFIGYVNIYNLVNPKLVTSSLSLLPPTPFAYQISGLIIAIG
                     VLIGIWGSVISIRRFLKV"
     gene            6778..7983
                     /locus_tag="U0280_000966"
     CDS             6778..7983
                     /locus_tag="U0280_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEM2270920.1"
                     /translation="MKKNTFIAISLAAVISLTPAFTTNVFADVNTDIQNQDKKINDIK
                     SKKTDLQSDLSGLVADLEKAQEKAKSLQGEFDKTGKELKKLNEDIKSINERIKERETV
                     LKERARAMQKTSNSNAYLEVILDAENLSDLVGRVSAVNQLVDSDKSILEDQQNDEKAL
                     KTKQTAVKKKQEDQATAIHEYEAQQNKIEAQKAEKEAIVAQLASDQASAENAKAGLVS
                     ERDKAAKEATARATALREATSSNVGQESSSSATSTSSGKSNTTKNVASNDNNSAPSAA
                     TPSSGGYSAMIAAANAQLGKPYSLGATGPSAFDCSGFTSYAFRAAGVSLPRTSGGQYA
                     AASKISASQAKPGDLVFFNYGSGIAHVGIYVGGGQMINAQNNGVKYDNITSGYWAKYL
                     VGYGRVANF"
     gene            8103..9413
                     /locus_tag="U0280_000967"
     CDS             8103..9413
                     /locus_tag="U0280_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEM2270921.1"
                     /translation="MLKKYGVVTILSLLVISAPLTGAHADTINDMQKRQNEIEQKKSE
                     LDKNIDSKNSELNHLESAEKDAAKELELLMKSLDATNKKLKEQEDKVSSENEKLKKLQ
                     KEMEKLRNDIRDRQKVLDNRARAIQTTGTATSYLDMIFEADDFKELVDRVTVVSAIVK
                     ADQNIMQDQKDDQDKLKVAESASQKKLENLKVLAVELEVSKNNMESQKQEKNDLVMAL
                     ANKKDLTKSEQTLLASEQGALTDEEKRLASNIAGEKAKQEAAIKAAEEKRMQEAAAAS
                     AKSSSVVKQQPSSDSSGATETVSSGGGQFIKPASGILTSGFSERTNPVTGKYESHKGQ
                     DIAGGGTVTVSAAASGTVVFSGFGASGSGFGGYGYVVKIDHGNGFQTLYGHMRAGSLK
                     VVTGQQVSQGQPIGIMGSTGQSTGQHLHFEIHKNGIPVDPAPYI"
     gene            9537..10985
                     /gene="cls"
                     /locus_tag="U0280_000968"
     CDS             9537..10985
                     /gene="cls"
                     /locus_tag="U0280_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM2270922.1"
                     /translation="MGLLAYLLVILLILNVFFAAVTVFLERRDTSATWAWLLVLTFVP
                     IFGFIIYLIFGRKLSGKKIFDWKGQEKIGIQESTANQIEMIRQKEFPFSDPNVKKHRD
                     LIYLLLVNDGAILTQDNEVELFVDGHEKFDALIADIEKAKDHIHLIYYIFHSDELGNR
                     LMRVLERKAAEGLNVKIIYDAMGSRTTKKSFFRTFQKNGGLVRPFFPSKLPLINFRLN
                     YRNHRKLAIIDGDVGYIGGFNIGDEYLGASKKFGYWRDTHLRVHGKAVYAMQTRFIMD
                     WNSASSTHKIDYKARYFPTFHGKGHTSMQIVSSGPDSEWQQIKNGYIKMINAAKKTIY
                     LQSPYFIPDASLLEAIKIAALSGVDVRVMIPNKPDHAFVYRATTNYAGELMETGAKIF
                     IYDNGFIHAKTLVVDGEIASVGTANMDFRSFRLNFEVNAFIYEKQMVQKLEDAFLEDI
                     LKSYQLTPELYAKRSLWIKFKEAVSRLLSPIL"
     gene            11013..12188
                     /locus_tag="U0280_000969"
     CDS             11013..12188
                     /locus_tag="U0280_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM2270923.1"
                     /translation="MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSI
                     SIYSPWLELKSFFGVSLLFGLAISVVTSLIGFGVMIEWVAIFNVVACFLLIVGMFRLS
                     STAFTIGITSLIFYFCYYFDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAF
                     LIQYTSAKNPSPSLRKSKRGKLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIG
                     SQSYSLIILPLFIGFQQQVQTQLPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLF
                     AFMFAVIGRFWISYRHYRSEKLAPKKFGPQPDGLVVLGARAATPSARLNLKAGEKITE
                     VNSRPVHTREELYEALNLNRAFCKLKVIDNAGEPRFEQTALYENESFELGLLLVEPR"
     gene            12339..13049
                     /locus_tag="U0280_000970"
     CDS             12339..13049
                     /locus_tag="U0280_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2270924.1"
                     /translation="MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSE
                     KPDLIVLDLMLPEMDGIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTK
                     PFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLD
                     LTPKEFELLLFLANHRGKVFSRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQ
                     PKYIKTIRGFGYKMENVK"
     gene            13049..14824
                     /locus_tag="U0280_000971"
     CDS             13049..14824
                     /locus_tag="U0280_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEM2270925.1"
                     /translation="MKKLWLKIGLSFFILFFVVMVIVGVFSGELMKSTYLNMKENQLE
                     DDAKILLQTTNMENLDLDKDAATIQKSLDPLGEDIDARITVIDSKGDVVADTKKDPEK
                     LDNHMNRPEVTDILKKGESVGISIRESDSLGYSMLYVAVPVKHQGKTDGVLRISISLE
                     SVDAAVAKLWGNLALIFGIALVIIAAISVFIARKITRPVREIIEVSTDLANHKYDSRI
                     HGKISGELQDLSISVNTLAESLETQMFEIKQNEQRLNAIVQNLVSGVMLINVDKQVIM
                     TNRTMYQILGETEITGKPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDA
                     SVSPILGENGEITGIILLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLL
                     DGAMYDEVLLKKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQS
                     ARTIFEMATEKNIRVTIPEKTSASVMIETDRDKLQQIVINLLSNAINYTPVDGKVEVK
                     LIEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVEN
                     CGGRIEVESQEEVGSTFRVTLPKKA"
     gene            15080..15988
                     /locus_tag="U0280_000972"
     CDS             15080..15988
                     /locus_tag="U0280_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2270926.1"
                     /translation="MKKKYLGIVAMLAAVMLVFAACGSDSSSSDKANGSTKGDKEVSG
                     SLTAVGSTALQPLVEAASKEFINTNPKAQINVQGGGSGTGLTQVQQGAVEIGNSDVFA
                     EEKDGVDASKLVDHRVAVVGMAPVVNKDVGVKNITKQQLIDIFTGKTTNWKDVGGKDE
                     KITIINRAEGSGTRATFEKWGLDGKTPVKAQEQDSSGTVRKIVSETPGAISYLAFSYI
                     DASVVGLSLDGVEPTEDKVATNDWKIWSYEHMYTNGEPKGLTKTFLKYMTSDEVQNNI
                     VPQLGYQSIKSMKVERDASGKLTDVK"
     gene            16082..17005
                     /gene="pstC"
                     /locus_tag="U0280_000973"
     CDS             16082..17005
                     /gene="pstC"
                     /locus_tag="U0280_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEM2270927.1"
                     /translation="MEAIKEKKLTQTSKKAHLETRGKIITFICISIMVIAAASILFFV
                     ISKGLATFTVNKVSFVDFITGTDWNPSQKDANGNPLVGALPMIIGSFAVTLFAACIAG
                     PLAIGAAIFMVEISPKFGKKILQPVMELLVGIPSVVYGFIGLSVVVPFIRDHISGSGF
                     GIAAATVVLTVMILPTVTSLSVDAIKSVPRHYREASLALGATRFQTIWKVVLRSSRSG
                     ILTAIVFGMARAFGEALAVQMVIGNSAVIPTSLFEPASTLTSILTMGMGNTVMGTLDN
                     NILWSLAMVLLAMSLFFIIVIRFIGRRRKVK"
     gene            17002..17886
                     /gene="pstA"
                     /locus_tag="U0280_000974"
     CDS             17002..17886
                     /gene="pstA"
                     /locus_tag="U0280_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEM2270928.1"
                     /translation="MNVKTKDKIATGVFYAIAVLIVIILAGLLGYILVKGVPQLSWKF
                     LTTPPQSFQAGGGIGPEIWNSFYMLVITMIISVPISLGAGIYMAEYARKNWITDLIRT
                     TIEVLSSLPSIVVGLFGFLVFVIQMGWSFSVISGALTLTIFNLPLLIRVVEEALNAIP
                     NTQREAGLALGLSRWETITRVLVPAALPAIITGVILAAGRVFGEAAALIFTAGQSTPI
                     LDFTDWNPVNPASPLNIFRPAETLAVHIWKINGEGIMPDAQAVSDGASAVLILSVLLF
                     NVLARLLGKFVYKRMTSS"
     gene            17914..>18554
                     /locus_tag="U0280_000975"
     CDS             17914..>18554
                     /locus_tag="U0280_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2270929.1"
                     /translation="MLTKKPEINTILQATPDPHSLPAAMATEDLHVYYGDNHAIKGVD
                     LTFPENKVTALIGPSGCGKSTYLRALNRMNDEIDGCRMEGQILYDGININRKEVDLYN
                     VRKEIGMVFQKPNPFTKSIYENVAFGLKRHGMKNKKEIMERVEKSLRRAALWDEVKDD
                     LGKSALSLSGGQQQRLCIARAVAMQPKVLLLDEPASALDPISTSKIEDLINEL"
BASE COUNT         6224 a         3107 c         3893 g         5330 t
ORIGIN      
        1 taattcctga aagttattat agatgaaact gcgcgatgac agcgaaaaca gtagaggaga
       61 atttaaatgg ctggactatt gaaaaagatt tttgaatcag gaaaaaaaga tgttaaatat
      121 ttggagagaa aagcagatga gattattgct ttagcggatg aaactgctgc tctttcggat
      181 gatgctctac gtgaaaaaac agtagagttt aaagagcgtg ttcaaaaagg tgaaacactg
      241 gatgacttat tggtagaagc atttgctgtt gccagagaag gtgcgaagcg tgcgctagga
      301 ttgtatccat ttaaagttca attaatgggt gggattgttc tccacgaagg taacattgca
      361 gagatgaaaa ctggtgaagg taaaacgtta acagcgacac taccagttta tttaaacgcg
      421 ctttctggtg aaggtgtgca tgttgttaca gtcaacgaat acttagctca tcgtgatgct
      481 gaagaaatgg gcgttttata caatttcctt ggactttctg tagggctaaa cctaaatgct
      541 ttatcgagca cagaaaaacg agaagcttat gcatgtgata ttacgtatag cacaaataat
      601 gaattaggat ttgactattt acgtgataat atggttgttt acaaagaaga aatggtacaa
      661 cgtccgctag cttttgctgt tatcgatgaa gtcgattcca ttttggtcga tgaagcgaga
      721 acaccattaa ttatttctgg tgaagcagaa aaatcgacta ttctatatgt gcgtgcaaat
      781 acttttgtcc gtactcttac agaagaggaa gattatacag ttgatattaa aacaaaatct
      841 gttcaattaa ccgaagatgg tatgacaaaa ggagaaaact actttgatgt agagaacctt
      901 tttgatttgg aaaataccgt aattttacat catattgctc aagcgttaaa agctaactat
      961 acaatgagcc tagatgtcga ttatgttgtt caagatgatg aagtattaat cgttgaccaa
     1021 ttcactggtc gtattatgaa aggtcgtcgt ttcagtgaag gtttacacca agcgcttgaa
     1081 gcaaaagaag gcgtaactat tcaaaacgaa tccaaaacaa tggcgacaat tacattccaa
     1141 aactatttcc gtatgtataa aaaacttgca gggatgacgg gtactgcaaa aacggaagaa
     1201 gaagagttcc gcgatattta taatatgcgc gttattgaaa tcccaactaa taaagtaatt
     1261 attcgtgatg accgtcctga tttaatttac acaacgattg aagcgaaatt taatgcagtg
     1321 gtagaagata tcgccgaacg tcatgcaaaa ggacaacccg tattagtcgg tacagttgcg
     1381 attgaaacat ccgaacttat ttctagcaaa ttaaaacgca aaggaattaa gcatgatgta
     1441 ctaaacgcga agcaacatga acgtgaagct gatatcatta aacatgcagg tgaacgtggc
     1501 gcggtagtaa tcgcaaccaa catggctggt cgtggtacgg atatcaaact tggtgagggt
     1561 acgattgaag ctggaggttt agcagttatt ggtacagaac gtcatgaatc acgtcgtata
     1621 gataaccaat tacgtggtcg ttctggacgt caaggagacc ctggtgtgac tcaattttat
     1681 ctttctatgg aagatgaatt gatgcgtcgt ttcggttcag acaatatgaa atcaatgatg
     1741 gaacgctttg gtatggcaga agatgctatc caaagtaaaa tggttagtcg tgcagttgaa
     1801 tccgcacaaa gacgtgtgga aggaaataac tttgattccc ggaaacaagt tttacaatat
     1861 gatgatgtac ttcgccaaca acgggaagtt atctataaac agcgttatga agtaattaat
     1921 gcagaaaaca gtttgcgtga aattattgaa caaatgattc aacgaacggt caactttatc
     1981 gtttctagta atgcatcaag ccatgaacct gaagaagctt ggaatctaca aggaattatc
     2041 gactatgtgg atgcgaactt acttcctgaa ggcactatca cactagaaga tctacaaaat
     2101 agaacaagcg aagatattca aaatttaatt ttagataaaa tcaaagcggc ttacgacgaa
     2161 aaagaaacac tactacctcc agaagaattt aacgaattcg aaaaagtagt attgcttcgt
     2221 gttgttgata ctaaatgggt tgatcatatt gatgccatgg atcatttacg tgacggtatt
     2281 catttacgtg catacggtca aattgatccg cttcgtgagt atcaatcaga aggctttgaa
     2341 atgtttgaag caatggtatc gtccatcgat gaagatgttg ctcgttatat tatgaaagca
     2401 gaaattcgcc aaaaccttga acgtgagcaa gttgccaaag gggaagcaat taatcctgct
     2461 gaaggtaaac cagaagcgaa acgccaacca atccgcaaag atcaacacat tggacgtaat
     2521 gatccatgcc catgtggtag cggcaaaaaa tataaaaatt gtcacggtaa agaagcatag
     2581 attgaaacaa tttaaaaagc gcctgaaaga cggcgctttt tgctatgaaa gtttataagt
     2641 aaatttaaaa aaggtggaat tagaatggaa ttagcagaaa ttcgtaatga attagaaaaa
     2701 acagcgcagc aaatcaaaga ctttaggggg tctctttgac ttagacagta tggaagttcg
     2761 aatcgctgag ctagaagacc aaatgttaga tccgaatttt tggaatgacc aacaagcggc
     2821 acagaaagta attaatgagt caaacggata taaagaaaca taccaagctt ttcatgcgct
     2881 agaagaagaa caagaaagta tggaaattag tctagaatta ttaaaagaag aagcagatga
     2941 agatttacaa gaagaattag aaaaagatat taaagcttac atggcgacta ttagtgagtt
     3001 tgaattaaaa ctgatgctaa gtgatccata tgacaaaaat aatgctattt tagaacttca
     3061 tccaggtgct ggtggtacag aatcacaaga ctggggttcg atgttacttc gtatgtatca
     3121 acgttggtct gagaagaaag gctttaaagt agagatgctt gattaccaag caggggacga
     3181 agctggaata aaaagtgtca cgttacttat aaaaggccac aatgcttacg gctatttaaa
     3241 agcggaaaaa ggggtgcatc gtctagtgcg tatttcgcca tttgactcat ccggcagacg
     3301 tcatacatca ttcgtttccg tggatgtaat gcctgaatta gatgatgata ttgaaattga
     3361 agtacgtaca gaagacttga aaattgatac gtaccgcgca actggtgcag gtggacaaca
     3421 tatcaataca actgactcag ctgttaggat gacacatatt ccatccggca tcgttgtaac
     3481 gtgccaatct gagcgttctc agcttaaaaa ccgtgaacag gcaatgaaaa tgttaaaaac
     3541 aaaattatac caaaaagaac aagaggaaaa agaacgcgag ctagcagaaa ttcgaggaga
     3601 acaaaaagaa attggttggg gaagccaaat tcgttcctat gttttccacc cttactccat
     3661 ggtgaaagat catcgcacaa attacgaaac cggtaatatt caagcggtaa tggatggaga
     3721 cttagatgaa tttatcaatg catatttgcg ttctaggatt ggataaaaga gatggcaaat
     3781 aaaagaaaga aacaaccgtt atccccagtt gtttctaaat taattgagta tatttatgtc
     3841 attataggtg cagctctcat cgcacttgct tttaatgttt tactactccc gaatcacgtt
     3901 gcttctggcg gagtgagcgg gataagtacg atcattaact atttaacagg ttggaatcct
     3961 gcttttattc agtgggcatt taatattcct ttatttctag cgggattatt ctttttaggc
     4021 tatcaattcg ggttgaaaac ttttgtcggc acgatgcttt taccgttctt tgtgtattta
     4081 acgcaaggct tggagccatg gacgcatgaa cctcttgtag ctgctttgtt tggcggcgta
     4141 cttgtaggaa tgggacttgg aatcgttttt cgaggcaaag catctactgg tggcacggat
     4201 gtcgctgcac aaattttgca taagtattct catctaacat tgggaatttg tgtggctttg
     4261 attgatggat tcgttgttat ttcggcaatg tttgtttttg acattgaatc agggctgtac
     4321 gcacttgtcg gattattcgc tacaagtaaa acaattgatt tggtacaagt tggtttaaat
     4381 caatccaaaa cagtctttat tatttctgaa aatcaagaag caatccgcca agcaattctg
     4441 tttaaaattg accgaggcat tactcggctc tccgcaaaag gtggatatac agaggatgac
     4501 aagcaaattt tattatgtgt gattgcgcaa agtgaatttt caaggttaaa agaagttata
     4561 aaagaaatag acccagaggc ttttgtggtt gtaatgagcg caagtgaagt aatgggtgaa
     4621 ggttttactt cataaaaaag taccatttcc taactttttt agtcaggaaa tggtactttt
     4681 tttaagtttt caggcccgct ttttgacaat ttgatgacag gcgagtttag cctagttgca
     4741 gatctcgagc tattttaact agattggtct attccgctag ctagaactgt aatgattttt
     4801 aatgtacctg taatgttatt tagggtaaaa acaagttaca atgttagcag tagaaaagac
     4861 caatgtgggt tcttttttat tttgtcttaa taacactaga ccgcagacat atatataaat
     4921 tggaaatcaa cgtaataatc gtatttccta ttacaataat cgagatattg tcacaccctg
     4981 aaatataatt gtaatgcaat taacctatag atgaaaaact gtcatggtat aattaagctt
     5041 atgttgtgag tttaaattcg tacctacaaa caactcatct tcatggttac catgcattac
     5101 ctaaaatgta actcagtaga aaggcatagt aaggtgataa aatgatatta atggaagatg
     5161 tttataagaa ataccctaac ggcataacag ctgccaatgg actcaacatt aacattggcg
     5221 aaggggaatt tgtttatgta gtaggcccga gtggtgctgg taaatctacc ttcatcaaaa
     5281 tgatttacag agaagaacga gcgacaaaag gcaaaatcat cgtagacaaa tttgatttga
     5341 ttaatatgaa aaatcgtgaa atcccatatc ttcgtcgtaa cgtaggcgtg gtattccaag
     5401 attacaaatt acttcaaagc aaaacagttt atgaaaacat tgcttatgcg atggaagtgg
     5461 ttgaaacaga gccatccgta attaaagaac gtgttatgga agtactagat ttagtcaacc
     5521 ttaagcataa agtaagaatg ttgccggatg aactttccgg tggtgagcaa cagcggatat
     5581 ccattgcccg ctccattgca aatatgccta aagtattaat agcagatgaa ccgaccggta
     5641 acctagatcc tgatacttca tgggaaatca tgaatatcct tgaagaaata agcaatcgcg
     5701 gaacaaccat cgtgatggca acccacaaca aagaaattgt taacacattg aaacaccggg
     5761 tagtcgctat cgagaatgga agaattgttc gagatgagca gcaaggagaa tatggctatg
     5821 aaatttagga ctgtaggaag acatataaga gaaagtttta agagccttta ccggaatggt
     5881 tggatgacct ttgcagcagc gagtgcagta acagtaacac ttatcttagt cagcgtgttt
     5941 tttgcaatat tgatcaacat gaacaagctt gcaacggatg tagaaaacaa tgtacaaatt
     6001 aacgtacata tttctctaag cgcagacaag aaacagcagc aagaacttga gaaaaacatt
     6061 gagaagattg atggagttga tagtgtcagc ttttcttcta aggatgacga attgaagaaa
     6121 ttagttggtg cgtacggcaa aaacttcgaa ttgtttaaac aagataatcc actatacgat
     6181 gtgtttgttg tagaggctaa agagcccaca caaacaaaga ctattgcaaa aaaagtagaa
     6241 aaattacagt acgtagataa tgtagaatat ggtgagaaaa cagtcgataa attgtttgat
     6301 accttgaaat ggggacgata tgctggtatt atactaagca ttgggttgtt actaacagcg
     6361 atgttcttaa tatcaaacac aatcaagatt gcaattttct cccgtcgaag agaaatagaa
     6421 ataatgaaat tagtaggagc gaccaactgg ttcatacgct ggcctttcgt tttagaaggt
     6481 gcttggctag gattaattgg ctcgattgta ccagttgtgt taacatttat aggctatgtt
     6541 aatatttaca acttggtgaa tccgaagtta gtgacaagct cactatcact tctgcctcca
     6601 acaccattcg cttatcaaat tagtggcttg attattgcaa tcggcgtact aatcgggatt
     6661 tggggaagcg taatatctat ccgcagattc ttgaaagtct aactcagaaa attacttaaa
     6721 tcgaaataaa aataatttaa aagaaaaagc tagggagctt tttaggaggt aaactttttg
     6781 aaaaagaata cgtttattgc gatttcactc gcagcagtta tcagtttgac gccagctttt
     6841 acgactaatg ttttcgcgga cgtgaataca gacattcaaa accaagataa aaaaattaac
     6901 gacatcaagt ctaaaaaaac agatttacaa tcagatcttt ctggtttagt agcagacctt
     6961 gagaaagctc aagaaaaagc taaatctcta caaggagaat ttgataaaac aggcaaagaa
     7021 ctaaaaaaac ttaatgaaga tattaaaagt atcaatgaac gtattaaaga acgcgaaact
     7081 gttttaaaag aacgtgctcg tgcgatgcaa aaaacttcta attctaatgc ttatcttgaa
     7141 gttatcttag atgcagaaaa tctttctgac ttagttggtc gtgtttctgc agttaaccaa
     7201 ttagttgatt ctgataaatc tattttagaa gatcaacaaa atgatgaaaa agctttaaaa
     7261 acaaaacaaa ctgctgttaa gaaaaaacaa gaagatcaag caacagcaat tcatgaatat
     7321 gaagcacaac aaaataaaat cgaagcacaa aaagctgaaa aagaagcaat cgttgctcaa
     7381 ctagcttctg atcaagcaag tgctgaaaat gcaaaagctg gtcttgtaag tgaacgtgat
     7441 aaagcagcta aagaagctac agcacgtgcg acagctttac gtgaagcaac atcttcaaac
     7501 gttggacaag aatcaagtag ttctgctact tctacatcaa gtggaaaatc taatacaacg
     7561 aaaaatgttg catcaaatga taacaattca gcaccaagcg cagcaacacc atctagtggc
     7621 ggatactcag caatgattgc tgcagctaac gcacaacttg gaaaacctta tagccttgga
     7681 gcaactggac caagcgcatt tgactgttca ggatttactt cttatgcttt ccgtgcagct
     7741 ggtgtttctc ttccaagaac atctggtgga caatatgcag cagcatctaa aatcagcgct
     7801 agccaagcaa aaccaggtga cttagtattc tttaactatg gtagcggaat tgctcacgtt
     7861 ggaatttatg ttggtggcgg tcaaatgatt aacgctcaaa acaatggcgt taaatatgac
     7921 aacatcacta gcggttactg ggctaaatat cttgtaggat atggccgcgt agctaacttc
     7981 taattattat tgaaaagtta aaaagcacct ttgtcgtttt aaacaaaggt gcttttttat
     8041 atggtatggt aaagggaatt atgaagttcc tagtcaaata gagaatagaa aaggagctta
     8101 aaatgttaaa aaaatatggg gtagtaacga ttcttagcct attggttatt tccgcgccac
     8161 taactggtgc gcacgcggat actatcaatg atatgcaaaa gcgccaaaat gaaattgaac
     8221 aaaaaaaatc agaactagat aaaaatatag actcgaaaaa ctcggaatta aatcatttag
     8281 aaagtgctga aaaagacgct gcaaaagaat tagaattact tatgaaaagt cttgatgcca
     8341 ctaacaagaa attaaaagag caggaagata aagtgagctc tgaaaacgag aaactaaaga
     8401 aattgcaaaa agaaatggaa aaactgcgca atgatattcg cgatcgtcaa aaagtacttg
     8461 ataatcgagc gcgtgctata caaacaactg gaacagccac ttcttattta gatatgattt
     8521 ttgaagcaga tgattttaaa gaacttgttg accgcgtgac agttgtatcg gcaattgtaa
     8581 aagcggacca aaacattatg caagaccaaa aagatgatca agataaacta aaagtagcag
     8641 aatctgcttc tcagaaaaaa ctagagaatc taaaagtact tgcagtggaa ttagaagttt
     8701 cgaaaaacaa tatggaaagt caaaaacaag aaaaaaatga tttagttatg gctctagcaa
     8761 acaaaaaaga cttaactaag agcgaacaaa cccttttagc tagtgaacaa ggtgcgctta
     8821 ctgatgaaga aaaacgactt gcttctaata ttgcaggtga aaaagcaaaa caagaggctg
     8881 caattaaagc cgctgaagag aagcgaatgc aagaagccgc agcagcaagc gctaaaagtt
     8941 cctctgttgt taaacaacaa ccaagttcag attcaagtgg agctacagaa acagtaagtt
     9001 ccggtggagg ccaatttatt aaaccagctt ctggtatatt aacttctgga tttagcgaac
     9061 gaacaaatcc cgtgactggc aaatacgaat cccacaaagg tcaagatatt gcaggtggcg
     9121 gtacagttac tgtttcagct gcagcatcag gaacagttgt attttcaggg tttggcgcat
     9181 caggtagtgg atttggtggt tatggttatg tagtaaaaat tgaccatggc aatggattcc
     9241 agacactata cggacatatg cgtgcaggta gcttgaaagt agttaccggc caacaagttt
     9301 cccaaggcca accgattggt attatgggat caacaggtca atcgacagga caacatctac
     9361 attttgaaat acataaaaac ggtattccag tcgatccagc accttatatt taattcaaaa
     9421 accattgatg aaaaatcaat ggtttttttc ttgtgttgaa acgaactgga ataggctaat
     9481 tgcagatttt atgatatgat actactatca gtttgtgtaa gaaaaggggg aacacaatgg
     9541 gactgttggc ttatctatta gtgattttgc taattttaaa tgtattcttt gcggcagtga
     9601 cggtcttctt agaaagacgc gatacatccg ccacttgggc ttggttgcta gtcttaactt
     9661 ttgttccgat atttggtttc attatctatt tgatttttgg gagaaaatta tcaggcaaaa
     9721 agattttcga ttggaaggga caagaaaaaa ttgggataca ggaatctact gccaatcaaa
     9781 tagaaatgat acggcaaaaa gaatttccat ttagcgatcc gaatgtgaaa aaacatcgtg
     9841 atttaatcta tttattactc gtaaacgatg gtgctatttt aacgcaagac aatgaagtgg
     9901 aactttttgt agatggacat gagaaattcg atgcgctaat tgctgatatt gaaaaagcga
     9961 aagatcatat acatctcatc tattatattt ttcattctga tgaactaggc aatcgcttaa
    10021 tgcgcgtgct ggaaagaaaa gcagcagaag gtttaaatgt gaaaattatt tatgatgcaa
    10081 tgggttcaag gacaacgaaa aaatcatttt tccgtacgtt tcaaaaaaat ggtggtctag
    10141 ttagaccttt ttttccgtct aaattaccat tgattaactt tcgtctcaac taccgaaatc
    10201 accggaaatt ggctataatc gatggagatg ttggttatat tggtggtttt aatattggtg
    10261 atgaatatct tggggcatcg aagaaatttg gttactggcg tgatacacat ttacgtgtac
    10321 atggaaaagc tgtttatgcg atgcaaactc gctttattat ggactggaat tctgcatcat
    10381 ccacacataa aattgattac aaagcgcgat acttcccgac ttttcatggg aaaggtcata
    10441 caagtatgca aattgtttcg agtggtcctg attccgaatg gcaacaaatc aaaaatggtt
    10501 acatcaaaat gatcaatgct gctaaaaaaa caatttattt acaatcacct tattttattc
    10561 cagatgcaag tttgcttgaa gcaatcaaaa tcgcagcact ttctggggta gatgtcaggg
    10621 ttatgattcc taataagcct gaccatgctt ttgtttaccg cgcaactact aactacgccg
    10681 gtgaattaat ggaaacggga gcgaaaatct ttatttatga taatggtttt atccacgcga
    10741 aaacactcgt tgtagatggc gaaattgctt cagttggaac cgcgaatatg gatttccgga
    10801 gtttccgact taattttgaa gtaaatgctt ttatttatga aaaacaaatg gtgcaaaaac
    10861 tagaagatgc ctttttggaa gatattctaa aatcgtatca actaacacct gaattatatg
    10921 caaaacgatc tttatggatt aaatttaaag aagcggtaag ccgactttta tcgcctatat
    10981 tatagaagta ttagggaaag ctggtgtaga aaatggatgt ttttgttgaa atactaaatg
    11041 gaatagggag actacttcta caaccagcat tgtatgtagg aattctttta gcgatactgg
    11101 ctggttttaa ccgtgtgagg tgggaacgga aatcatttag tatcagtatt tattcacctt
    11161 ggttagaatt gaaaagtttc tttggtgtga gtttgttatt tggattagct atttctgttg
    11221 ttacctcgct cattggattt ggtgtgatga tagagtgggt tgctattttt aatgtagtag
    11281 cttgtttctt gctaattgta gggatgttcc gtttgagttc aacggcattt actatcggta
    11341 ttacgagttt gattttttat ttctgctatt attttgatgt gagtttagca ccgtttacga
    11401 atgaggcatt cacgtatgac tcgattttta ttgataactt tatgatttcc atgacatttc
    11461 tgctcgcagt attgttattt gtagaagctt tcttaatcca gtatacaagc gcaaaaaatc
    11521 cctctccatc tcttcggaaa agtaagcgcg gtaaattaat cggttccttt caattaagaa
    11581 aattatggtt tgtaccgatt gttatgtttt taccaggaga tgtgtttacg aaaatttttg
    11641 agtggtggcc agtctttgct attggttcgc agtcgtattc attaatcatt ttaccgttat
    11701 tcatcggctt ccaacaacaa gtacagacac aacttccaga agaagcaagc cgtaaaattg
    11761 ctgttgaggt aacaacatta gcaacaatta ttgctgtagc tggtttatta ggaattgtga
    11821 tgccagtact gacattgttc gctttcatgt tcgctgtaat tggtcgattt tggatttctt
    11881 atcgccacta tcgttccgaa aaattagcac caaagaaatt tggtcctcag ccagatgggc
    11941 ttgtagttct gggtgctcgt gcggccactc cgtctgcgcg actaaacttg aaagctggtg
    12001 aaaaaattac agaagtaaac agtcgaccag tgcatactcg cgaggaactt tacgaagcgc
    12061 taaacttaaa ccgagcattt tgtaagctga aagtaattga taacgctggt gaaccacgtt
    12121 ttgaacaaac agcactttat gagaatgaat catttgaact tggtttgtta ttagtagagc
    12181 caagataatt ttaggacacc agtgttgttt gaaagcagca ttggtgtttt aagtttttgt
    12241 aaagataaga ttaatataaa ggcatttcta cccgaaaaag gttaattcat gctatatttt
    12301 agataaaagt gttacataaa gaagggatgg gaagtacgtt ggtaaaaatt cttgtagttg
    12361 atgatgaagc ttctattgtt acgttactgc aatttaacat tgaaaaagct gggtttgatg
    12421 tggtaacagc agaagacggc agaaccggat acgaactcgc tttgtccgaa aaaccagatt
    12481 taattgtgct tgatttaatg cttcctgaga tggacggaat cgaagtaaca aaaaaacttc
    12541 gccaagataa agtaaatgtg ccaattttaa tgttaacggc aaaagatgaa gaattagata
    12601 aaattatcgg actggaactt ggagcagatg actatatgac taaaccgttt agcccaagag
    12661 aagtagttgc aagaattaaa gcaatcttgc gtcgaacaga aggaaaagcc gaaataatag
    12721 aagaaataac cgaagattcg gaagctacga tattaattgg tgatttgaaa attttgccag
    12781 atagttatga agtgtattta caagatgatt tacttgattt aacgccaaaa gaatttgagt
    12841 tattgctatt cttggcaaat catcgtggca aagttttctc tagagaccaa ttgctcgata
    12901 ctgtctggaa ctatgattac gttggagaaa cccgaattgt agacgttcat gtcagccatt
    12961 tgcgcgataa aatcgaacta gatacaaaac aacctaaata catcaaaaca attcgtggct
    13021 tcggttataa aatggagaac gtgaaataat gaagaaatta tggctgaaaa tcgggttatc
    13081 cttttttatc ttatttttcg ttgtgatggt tattgttggc gttttttccg gggaactaat
    13141 gaaatcaacg tacttaaata tgaaagaaaa tcaattagaa gatgacgcaa aaattctgct
    13201 tcaaacaact aatatggaga atttagattt agataaagat gccgcaacta tccaaaaaag
    13261 tcttgatcca cttggcgagg atattgatgc acgcattacg gtgatcgata gcaaaggcga
    13321 cgtggtagct gatacaaaaa aagacccaga aaaacttgat aaccatatga atcgccccga
    13381 agtaacagat attctgaaaa aaggggaaag cgttggtatt tcaatccgtg aaagtgattc
    13441 acttggttat agtatgcttt atgtcgcggt tcctgttaaa catcaaggca aaacagatgg
    13501 tgtactgaga atttcgattt cacttgaatc tgttgatgcg gcggttgcta aactctgggg
    13561 gaacttagcg cttattttcg gtattgcact tgtaattatc gcagcaatca gtgtttttat
    13621 tgctagaaaa atcactagac cagttcgcga aatcatcgaa gtctctacag atttggccaa
    13681 tcataaatac gatagtcgca tccacggtaa aataagcgga gaacttcaag atctctccat
    13741 tagtgtaaac acattagcag aaagcttgga aacgcaaatg tttgaaatta agcaaaatga
    13801 gcaacgactt aatgctattg tccaaaactt agtaagtggc gtaatgctga ttaatgtcga
    13861 taaacaagtc atcatgacca accgcaccat gtatcaaatt ttaggagaga cagaaatcac
    13921 cggcaaacca ttttatgaag taattaaaag ttttgcactg agccagttga tagaagcgac
    13981 ttttgaaaca aaaaccattc aacaaaaaga aattattctt tatttcccgc gcgaaatgat
    14041 tttggatgca agtgtttcac caattttagg ggagaatggg gaaattactg ggattatttt
    14101 attacttcat gatatcactc aaattcgcca tttggaaaat gttcgttctg aatttgtcac
    14161 caacgtttct catgaattaa aaacacccgt gacggctctc aaaggattcg cggaaacatt
    14221 acttgacggc gcaatgtacg acgaagtgct actaaaaaaa ttcctaacga ttattaaaga
    14281 agaaagtgat cgattgcacc gtttgattat ggatattctc gcactttcta gaattgaaca
    14341 aaatccggtc gcggaaaacg ttgagctggt tgacgttgac gaggtaattg aacaatctgc
    14401 tcgcactatt tttgaaatgg caactgaaaa aaatattcga gtaaccattc cagaaaaaac
    14461 aagtgcatcc gttatgattg aaacagatcg tgacaagctg caacagatag taattaactt
    14521 gctttctaat gcaatcaact acaccccagt cgatggaaaa gtagaagtta aattaatcga
    14581 gcaagaggca gaagttataa tagaagtaac tgataacgga attggcatcc cggctaaaga
    14641 tattgaccgc gtgtttgaac gattctaccg agtggataaa gcccgcagca gacactcagg
    14701 aggcactgga cttggacttt ccatcgtcaa gcatttagtt gaaaactgtg gtgggcgaat
    14761 cgaagtagaa agccaagaag aagttggctc gaccttccgc gtcactttac caaaaaaagc
    14821 ctaacaaata tcctgtttga aagaatgtaa tctttcagac aggatatttt tattttattt
    14881 acgaaagaaa caaatttggt gtaataattt actagtttgc cttctgtttg aaagatattc
    14941 ataaaaaagt ttacattttc gacaaaaaat gtggttattt acaattactt aacattagct
    15001 acacaccacc ttaaatctca gacgttatag taatacttgt aaggaataac aattaaaaaa
    15061 acaaggtggg aataagataa tgaaaaagaa gtatttggga atagtagcaa tgttagcagc
    15121 agtaatgctt gtcttcgcag catgtggaag tgacagcagt tcatcagata aagcaaacgg
    15181 atcaacaaaa ggggataaag aagtttctgg ctcattaaca gcagtcggat ccactgcact
    15241 tcaaccactc gttgaagcag cttccaaaga atttattaac actaacccta aagcacaaat
    15301 caacgtgcaa ggcggtggtt ctggaactgg tttaacacaa gtacaacaag gcgcagttga
    15361 aattggtaac tcggacgtat tcgctgaaga aaaagatggc gtagatgctt cgaaactggt
    15421 tgaccatcgt gtagcagttg tcggaatggc tccagtagta aacaaagatg taggcgttaa
    15481 aaacattaca aaacaacaat taatcgatat cttcactggt aaaactacta actggaaaga
    15541 cgttggcggt aaagacgaaa aaattacaat catcaaccgt gcggaaggaa gcggaacacg
    15601 tgctactttc gaaaaatggg gacttgatgg taaaacacca gttaaagcac aagaacaaga
    15661 ttcatccggt acagttcgta aaatcgtaag cgaaactcca ggagcaatca gctacctagc
    15721 attctcttac attgacgctt ccgtagttgg actttcatta gatggcgttg aaccaactga
    15781 agataaagtt gcaactaacg actggaaaat ctggtcttat gaacatatgt atacaaatgg
    15841 cgaaccaaaa ggcttaacaa aaacgttctt aaaatacatg acttctgatg aagtacaaaa
    15901 taatatcgta ccacaacttg gttaccaatc aatcaaatcc atgaaagtgg aacgtgatgc
    15961 atctggtaaa ctaactgacg taaaataaaa agaatgaaat gggcgtctat cctagtaata
    16021 ccgggataga cgtataccca tgttaggagt aaacatggga ggagaaagga gcttacgtga
    16081 cttggaagcg ataaaagaaa agaagcttac acaaacttct aaaaaggcgc atctagaaac
    16141 tagaggcaaa attattacat tcatctgtat ttcaatcatg gttattgccg cagcgtctat
    16201 tttgtttttt gttatatcga aaggtttagc aacatttaca gttaataaag tgtcttttgt
    16261 tgattttata actggaacag actggaatcc ttcgcaaaaa gatgcaaacg gaaatcctct
    16321 agttggcgct ttgccaatga ttattggttc ttttgcagta acgctttttg ccgcttgtat
    16381 tgcaggacca cttgcaatcg gtgcagccat ttttatggtg gaaatctcac ctaagtttgg
    16441 gaaaaagatt ttgcaaccag ttatggaact tttagttggt attccatctg ttgtttatgg
    16501 attcattgga ctaagtgttg tcgttccatt tattcgtgac catatttcgg gaagtggctt
    16561 tggtattgcc gctgcgaccg tagttttaac agtaatgatt ttgccgactg ttacttcact
    16621 cagcgtagat gcgattaaat ctgttccacg tcactaccga gaagcttcgt tggcacttgg
    16681 cgcaacacgt ttccagacga tttggaaagt agtgcttcgt agctcgcgtt caggaatttt
    16741 gacagcgatt gtattcggga tggctcgtgc attcggtgaa gctcttgctg tacaaatggt
    16801 tattgggaac tctgctgtta ttccaacctc attatttgag ccagcttcta cattaactag
    16861 tattttaaca atgggtatgg gaaatacagt tatggggacg cttgataata atatcctttg
    16921 gtcacttgca atggtgttac tcgcaatgtc actatttttc atcattgtga tccgcttcat
    16981 cggacgtagg aggaaagtca aatgaatgta aaaacaaaag ataaaatcgc gacaggcgtt
    17041 ttctatgcta ttgctgtatt aattgtcatt attttagctg gcttacttgg ctatatttta
    17101 gtaaaaggtg ttccgcaact tagctggaag tttttgacga ccccaccaca gtcgttccaa
    17161 gctggcggcg gaatcggtcc tgaaatctgg aattcatttt atatgctcgt tattacgatg
    17221 attatttctg ttcctatctc gctcggtgcg ggaatttata tggcagaata tgcgcgtaaa
    17281 aattggatta cagatttaat tcgtacaacg attgaagtgc tttcctcact tccatctatt
    17341 gtcgtagggc tattcggttt ccttgttttt gttattcaaa tggggtggag cttctcggtt
    17401 atttccgggg cgcttacact aacgattttc aatttaccac tattaattcg tgttgtcgaa
    17461 gaggcactta atgctattcc aaacacgcag cgtgaggcag ggcttgctct cggtttatcc
    17521 agatgggaaa caatcacgcg agtacttgtt ccagccgcac tcccggcaat tattaccgga
    17581 gttatcttag cagcaggacg ggtatttggt gaagcagcgg cgcttatttt cacagccggt
    17641 caaagtacac ctattcttga tttcactgac tggaatccgg tcaatccagc ttcaccacta
    17701 aatattttcc gcccagcaga aacgttagct gttcatattt ggaaaattaa tggtgagggg
    17761 attatgccag atgcacaagc cgtttctgac ggagcttctg cggtattaat tctttccgta
    17821 ttacttttca acgtcttagc tcgcctgctt ggaaaatttg tttataaacg catgacctcg
    17881 tcttaaaaag ccaggaaaag gagattttaa atgatgttaa cgaagaaacc tgaaattaat
    17941 acaattttac aagcaacacc agatcctcat tcacttcctg ctgcaatggc gaccgaggat
    18001 ttgcacgtat attatggcga taatcacgca attaaaggtg ttgatttaac cttcccggaa
    18061 aataaagtga cagctttgat tggaccatct ggttgcggta aatccacata tttaagagca
    18121 ttaaaccgaa tgaacgatga aattgatggt tgccgcatgg aaggtcaaat tttatacgat
    18181 gggattaata ttaatcgtaa agaagttgat ttatacaatg ttcgcaaaga aataggcatg
    18241 gtattccaaa aaccaaatcc attcacgaaa tctatctatg aaaatgttgc ttttggcctc
    18301 aaacgtcatg gcatgaagaa taaaaaagaa attatggagc gtgtggagaa aagtttgcgc
    18361 cgagcagctc tttgggacga agtaaaagac gatttaggaa aaagcgcact atccctttct
    18421 ggtgggcagc aacaacgtct ttgtattgct agagctgtcg caatgcagcc aaaagtattg
    18481 ttacttgatg agccagcatc tgcacttgat ccaatttcga caagcaaaat tgaagattta
    18541 attaatgagt tgaa
//
LOCUS       DASDXX010000035        18454 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.035, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000035 DASDXX010000000
VERSION     DASDXX010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18454
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.035"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1825)
                     /gene="lepA"
                     /locus_tag="U0280_000976"
     CDS             complement(<1..1825)
                     /gene="lepA"
                     /locus_tag="U0280_000976"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEM2270930.1"
                     /translation="MNKEEMNARQKKIRNFSIIAHIDHGKSTLADRILEQTGALTHRE
                     MKNQLLDSMDLERERGITIKLNAVQLKYKAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVREEIEDVI
                     GLDASDAVLASAKSGIGIEDILEQIVEKVPEPSGDVNKPLKALIFDSVFDAYRGVIAN
                     IRIMDGVVKAGDRIKMMSNGKEFEVTEVGVFSPKATPRDELLVGDVGYLTAAIKNVGD
                     TRVGDTITLANNPAEEALDGYRKLNPMVYCGLYPIDSSKYNDLRDALEKLELNDSALQ
                     FEAETSQALGFGFRCGFLGLLHMEIIQERIEREFNIDLITTAPSVIYHVNLTDGSNIV
                     VDNPAEMPEPGVIESVEEPYVKATVMVPNDYVGAVMELAQNKRGNFITMEYLDDIRVS
                     IVYEIPLSEIVYDFFDQLKSSTKGYASFDYELIGYKASKLVKMDILLNAEKVDALSFI
                     VHRDFAYERGKIIVEKLKELIPRQQFEVPIQAAIATKIVSRSTIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMAILKMDESK"
     gene            2070..2324
                     /locus_tag="U0280_000977"
     CDS             2070..2324
                     /locus_tag="U0280_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEM2270931.1"
                     /translation="MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNAD
                     NAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK"
     gene            complement(2410..3441)
                     /gene="holA"
                     /locus_tag="U0280_000978"
     CDS             complement(2410..3441)
                     /gene="holA"
                     /locus_tag="U0280_000978"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM2270932.1"
                     /translation="MLPEWKQIRSKKIMPVYLIIGTEDYIINETKQLLIDNILEGEEV
                     EFNYANLDLEEMPIEVVIQEAESMPFFGDKRLVMANNPLFLTTEKSKNKVEHDTAKLE
                     AYLNEPVDYSVLCFVARVEKLDERKKLTKLLKKTATVIEAKRPNENELKKWIEAKLSE
                     NNMQMSQEAITRLVELTSGQLTTAMNELQKLMLYCFDSKEITIQDVESLVVRSLEQNI
                     FLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLKLLEQQGYSQQQ
                     AATKLKVHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMKTGFGDKEQKLEWFLFE
                     LQDNRQKRV"
     gene            complement(3509..5731)
                     /locus_tag="U0280_000979"
     CDS             complement(3509..5731)
                     /locus_tag="U0280_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEM2270933.1"
                     /translation="MIVLAIVCANFTSSIVPICICLLGLIAFIKKSKIILLFVLIYFL
                     TYSFLFVIEKFNTSSFTATEYNGNCQIIDNLKIDGDSFQTFVRCEKEKFQLSYKITTE
                     EEQQKLKKLHYGQFISVSANIETPSVNRNQNQFNYQTYLKNQNVHYILRASNLAISSQ
                     FSPSFLMKLQNIRLKIITHLTEKISPTISPYCLALISGEKNGFSPEMYEVYQQMGVVH
                     LLAISGLHVNLLIGAIYFLLLKFGITRDRAITCLLVFLPFYVILTGANPPVIRAATMT
                     ALLLLSEKYTTKWSSFSAICLSFILFFLLQPYIIREVGFQLSYAVSFGIILSSRQILT
                     RQQNAFTKSLAISFISTIMSSAVMMYHFYSFSWVGIFFNLIYVPIFTMIILPGCLTVF
                     VLSFFSTEIFHFPEAMLTFFIQLVEKLTYIFAKIPHQTIVTGRPNTVILVLTIITIII
                     VFSQWQKKKFPLGIFICFCLLCYLASFNFSGKVSFIDVGQGDSILIQLPYNQGNYLID
                     TGGQLPFEKEAWAKKRKPFTIGGSTLSPVLKSKGINSLDKVIITHSDADHMEGLDDLQ
                     KNITIKELIFAKGAENKPIMKEALAAMPKVKQTIILAGAKWQIGENSFECLYPDKAGE
                     GGNDDSIVLKAVLDGKIWLFTGDLEANGEKGISEQPIKADILKVGHHGSKTSSSKEFI
                     QKVKPTFAVISCGLNNRFGHPHAETINTLEKAGVTILRTDVQGEITYTFGKGFEATLK
                     "
     gene            complement(5766..6326)
                     /locus_tag="U0280_000980"
     CDS             complement(5766..6326)
                     /locus_tag="U0280_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComE operon protein 2"
                     /protein_id="HEM2270934.1"
                     /translation="MQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYN
                     GSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACT
                     KSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLV
                     KEAAVEVNIEPEKAEQLYQNISEKLN"
     gene            complement(6398..7000)
                     /locus_tag="U0280_000981"
     CDS             complement(6398..7000)
                     /locus_tag="U0280_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM2270935.1"
                     /translation="MMDLVKKHKNYILIGIAILCAGLVYIWIPDSKSDAVTANQAVTK
                     EEKPKKEETKLSNEVYIDIKGAVRTPGVYKLPMDARVQDVVKIAGGLTAEADCSKLNL
                     AEKLKDEMSIYVYKKGEEGPATQGANTEEASTGSAKINLNSATKDDLQQVPGIGESKA
                     TAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLKEYLDVN"
     gene            complement(7103..7834)
                     /locus_tag="U0280_000982"
     CDS             complement(7103..7834)
                     /locus_tag="U0280_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2270936.1"
                     /translation="MSYEYFPGFYDRLMDSELYDEWLEFTAHFIGDTPKKILDLACGT
                     AEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEINLPIIEQDMSKLALKQTFDVVT
                     CFCDSLNYLETEQALEATIQAVSVHLEPNGLFLFDVHSVFKVDQGFKDYSYGDSDEEI
                     STIWNSFPGEHPHSVEHELTFYILDEDDTYNRVDELHKERTYPIATYENILKKYGFTK
                     IDIYADFSHEKPNNTSERIFFAARK"
     gene            complement(7890..8246)
                     /gene="rsfS"
                     /locus_tag="U0280_000983"
     CDS             complement(7890..8246)
                     /gene="rsfS"
                     /locus_tag="U0280_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEM2270937.1"
                     /translation="MNSYDTLMLTAKAADDKRAEDILALDMKGLSSFADYFVICHGNS
                     DKQVQAIAREIKEKALENQVDVKRLEGFDAAKWILIDLGDVIIHVFHKEERSYYNLEK
                     LWGDAPLVDVSAAFIS"
     gene            complement(8251..8826)
                     /gene="yqeK"
                     /locus_tag="U0280_000984"
     CDS             complement(8251..8826)
                     /gene="yqeK"
                     /locus_tag="U0280_000984"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HEM2270938.1"
                     /translation="MERNEMLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKAR
                     ITALLHDYAKYYDDDKARKIIEDEGYDPRLLSFHRSLWHAPVGAYLAEKEFGITDTEI
                     LEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLNEAMLFALSNT
                     ITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY"
     gene            complement(8813..9379)
                     /locus_tag="U0280_000985"
     CDS             complement(8813..9379)
                     /locus_tag="U0280_000985"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEM2270939.1"
                     /translation="MKHKVGILGGTFDPPHLAHLRMAEEAKKQLGLEKILFLPNKIPP
                     HKHISGMASNDERVEMLQLMIEGIDSFEIDTRELMRAGKSYTYDTMRDMISEQPDTDF
                     YFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPSYQTEVPYDIVKINMPETTISSTEI
                     RNNIENASTFLPEKVWSYIKEHQLYGKK"
     gene            complement(9397..9687)
                     /gene="yhbY"
                     /locus_tag="U0280_000986"
     CDS             complement(9397..9687)
                     /gene="yhbY"
                     /locus_tag="U0280_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEM2270940.1"
                     /translation="MLTATQKRFLRKEAHNIQPIFQVGKGSVSPNLIIHVKEALEARE
                     LIKISILQNCEEDKQTVAEKISARSGAEIVQVIGRTIILYKTSVNKQQIKLP"
     gene            complement(9687..10508)
                     /gene="aroE"
                     /locus_tag="U0280_000987"
     CDS             complement(9687..10508)
                     /gene="aroE"
                     /locus_tag="U0280_000987"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM2270941.1"
                     /translation="MEKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIEEDAFE
                     TEIKKLMDSGVRGFNITTPFKERILPFLDELEDLAAASGAVNTVLKKEDKWYGFNTDG
                     KGYLEGLEEIRSITEDDSILITGAGGASKAIYLALSTHTDAKITVTNRTTEKAIEMTK
                     DNENHHAVTLEEAEKQLADFTVIIQTTSIGLEASKNKSPISLANVKKGTICSDIIYNP
                     AETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLGGN"
     gene            complement(10528..11628)
                     /gene="yqeH"
                     /locus_tag="U0280_000988"
     CDS             complement(10528..11628)
                     /gene="yqeH"
                     /locus_tag="U0280_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HEM2270942.1"
                     /translation="MTEEIRCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLK
                     HYNEIQDVALTDDDFLRILNQISSKQALIVYVVDIFDFDGSWLPGLPRFAGSNPVLLV
                     GNKEDVLPKSLKRDKLTRWMRTRAKEQGLAATDVVLVSAEKGHGFDTLLEKIEELRNG
                     QDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLVDTP
                     GIINHHQMAHFIDTTTLKAITPKKEVKPAVFQLNEEQTLFLGALARLDYVSGGRKSLV
                     VYVSNNLPIHRTKLEKADALYEKQAGIVLQPPTEEGMETLPKLVPYSFTIKEKADIVF
                     SGLGWVTIPEGGAKVTAWVPEGVSATIRTSLV"
     gene            complement(11625..12146)
                     /locus_tag="U0280_000989"
     CDS             complement(11625..12146)
                     /locus_tag="U0280_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HEM2270943.1"
                     /translation="MLKQFSPDKMLNTPFGITAAQLRKMGKTTILTDLDNTLLAWDQL
                     DATDEVINWFTILKEEGIKVMIFSNNNEERVARVAKAIDVPYLARAKKPLGANFRWAL
                     KEMDATPEETVMIGDQIMTDIFGGNRQKLTTIFVRPVKQTDGMATKLNRMMESVILKR
                     LAKKNQIKWEESL"
     gene            12308..14116
                     /locus_tag="U0280_000990"
     CDS             12308..14116
                     /locus_tag="U0280_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEM2270944.1"
                     /translation="MSKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSE
                     WDVPENVEASAEFLLLVNQNADISKILLTAGSFLECLASADINDSRANELSALIYQYV
                     ATLATAEDEWHDKFAQVSDRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAIN
                     SLAVDGYRGWSDHYDTIVGKLRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEY
                     TRVWQSEARLFSDTLNHLSGFRLATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQT
                     NKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYSYQEGAEFIIEQFNKFSPK
                     MANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELG
                     HAFHSHVIRDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGR
                     SIAFFMNIHARFIFECNFYEARKQGVVSVDRLNALMEEAQREAYLDALDEYHPQFWAS
                     KLHFYIADVPFYNFPYTFGYLFSLGIYHKAQAEGASYEDKYIALLQDTGSMTTEQLAE
                     KHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEYIK"
     gene            complement(14152..14853)
                     /locus_tag="U0280_000991"
     CDS             complement(14152..14853)
                     /locus_tag="U0280_000991"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEM2270945.1"
                     /translation="MTIGIIGAMEEEVELLKNSMPSVEEIVIGGAKFYVGEIAGKEVV
                     LLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDV
                     TEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFAASENKAVYGLVVTNDSFIMRPD
                     QHETIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLA
                     AKQSATCIIELLKTI"
     gene            complement(14903..15526)
                     /locus_tag="U0280_000992"
     CDS             complement(14903..15526)
                     /locus_tag="U0280_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YrrS family protein"
                     /protein_id="HEM2270946.1"
                     /translation="MADKRQSNNRRIKQNLVEGSRSQQNTKRKKTNLVLNVLIIVVSL
                     LIIGSLYFVLFKTESDPTQQDNKTASSTAKKEDAAKSSEKKKDSSDDKTTETTESDDP
                     NVAKVITKDWKPIGTEQTGDHVNSYSSTSVDWQEKRKAFSAATDIPISNTSLWFVEQG
                     ADPATQAIGTLSTKENPDKAYRVYITWVDGEGWQPTKVEELKTNDKR"
     gene            complement(15577..16059)
                     /gene="greA"
                     /locus_tag="U0280_000993"
     CDS             complement(15577..16059)
                     /gene="greA"
                     /locus_tag="U0280_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEM2270947.1"
                     /translation="MATEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGD
                     LSENSEYDSAKDEQAFVEGRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDG
                     EEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIEKITAS
                     "
     gene            complement(16253..16882)
                     /gene="udk"
                     /locus_tag="U0280_000994"
     CDS             complement(16253..16882)
                     /gene="udk"
                     /locus_tag="U0280_000994"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM2270948.1"
                     /translation="MTKKPIVVGVTGGSGSGKTSVTKAICDHFSGHSILMIAQDVYYH
                     DQANISFEDRLKVNYDHPLAFDTDLLISHIAALRRYETIEKPIYDYAKYTRKKEVEIQ
                     EPREVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDMKERGRTMDSVIEQ
                     YLSVVKPMHNEFIEPTKKFADIIIPEGGENHVAIDLMTTKIESILQKHV"
     gene            complement(16879..17532)
                     /locus_tag="U0280_000995"
     CDS             complement(16879..17532)
                     /locus_tag="U0280_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEM2270949.1"
                     /translation="MNDIIHDYLLKNIPKSSPFFEELEAYAKENEVPIMEPDSLYCLL
                     QILDIQKPKRILELGTAIGYSALKMADKLPDAEIITVERDEERYEQAIHNIQRYGAND
                     RVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTDSLAENGVIYSDNVLF
                     KGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS"
     gene            complement(17608..>18454)
                     /gene="mltG"
                     /locus_tag="U0280_000996"
     CDS             complement(17608..>18454)
                     /gene="mltG"
                     /locus_tag="U0280_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEM2270950.1"
                     /translation="SFYVKYNNDTNLKAGNYEFSPSMNTDQIVKKMQEGKTVAPAKLV
                     IPEGYTLDQIADRIVAYQPKLKKADVLKTMDDPEFVASMIKAYPDTVTNDVLNKSIKH
                     PLEGYLYPATYTFKGTDVSAEQIITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSI
                     IEKEATENVDRKMIASVFYNRLAKDMRLQTDPTVLYALGEHKSKTTYKDLEVDSPYNT
                     YKNNGLPPGPISNSGDSSMEAALYPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEH
                     ITKNN"
BASE COUNT         5354 a         3608 c         3147 g         6345 t
ORIGIN      
        1 atttggattc gtccattttc aagattgcca taaatgcttc ttgcgggact tcaactgaac
       61 cgatttgttt cattcgtttt ttaccttctt tttgtttctc taaaagtttt cgtttacgag
      121 atacgtcccc accgtaacat ttagcaagta cgttttttcg caacgcttta atagtagaac
      181 gagaaacaat ttttgtggca attgctgctt gaataggtac ttcaaattgt tgtcttggaa
      241 taagttcttt taatttctcc acgatgattt ttccacgctc ataagcaaaa tcacggtgaa
      301 cgataaagct aagtgcatca actttttctg catttaaaag aatatccatt ttcacaagtt
      361 tagaagcttt atagccaatt aattcataat caaaggacgc ataacctttt gtagatgatt
      421 ttaattggtc aaaaaagtca tatacgattt cggataatgg aatttcgtac acaatactta
      481 cgcgaatatc atctaagtac tccatcgtaa tgaagtttcc acgtttgttt tgtgccagtt
      541 ccatcactgc accaacataa tcatttggaa ccatcacagt tgcttttaca tatggctctt
      601 ccacgctttc aataacacca ggttctggca tttcagcagg attatcaacc acaatgttag
      661 aaccatctgt caagttgaca tgatagataa cacttggagc agtggtaatt aaatcaatgt
      721 taaattcacg ttcgattcgc tcttgaataa tttccatatg tagtaatcct aagaaaccac
      781 aacggaaacc aaaacctaat gcttgagaag tttccgcttc aaattgcaaa gcagagtcat
      841 ttaattctag tttttctaaa gcatcacgaa gatcattata tttagaggag tcgattggat
      901 atagaccaca ataaaccatt ggatttaatt tacggtaacc atccagcgct tcttcagctg
      961 gattattcgc aagtgtgatt gtatcaccta cgcgcgtatc tccaacattt tttatagctg
     1021 ctgttaagta accaacgtca ccaacaagta attcgtcacg tggtgttgcc tttggtgaga
     1081 atacaccaac ctccgttact tcgaattctt tgccattgga catcatttta attcggtcgc
     1141 ctgcttttac aacaccatcc atgatacgga tattagcaat aacaccacga tatgcatcaa
     1201 aaacagagtc aaaaatgagc gcttttagtg gtttatttac atcaccagat ggctcaggaa
     1261 ctttttcgac aatttgttct agaatgtctt caataccaat accagatttc gcagaagcaa
     1321 gtacagcgtc agaagcatct aaaccaatta catcttcaat ttcttcgcgg actctttccg
     1381 gatcggccgc tggtaaatcg attttgttaa tgactggtaa aatttctaaa tcgttgtcta
     1441 gtgctaaata aacattagca agggtttgtg cttcaattcc ttgcgcagca tctacaacaa
     1501 ggattgctcc ctcacatgca gctaaacttc ttgatacttc ataggtgaaa tcgacatgcc
     1561 caggcgtatc aatcagatgg aagatatatg tttctccatc ttttgcttta tattttaatt
     1621 gtacagcatt taattttatg gttatcccgc gttcacgttc taaatccatc gaatctagta
     1681 gctgattttt catttcacga tgcgtcaaag cacccgtttg ttctaaaatc cgatcagcga
     1741 gtgtagattt accatgatct atgtgcgcga taatcgaaaa gtttctaatt ttcttttgtc
     1801 ttgcattcat ttcttctttg ttcatttccc cagctcctga ttagaactca tcgcataaat
     1861 ccgatggcaa gctatccttg attatatcag tagaacgctt aacattcaat gacttcttta
     1921 ttaattacgt ataaatttaa aataaaatag aaagtattat tgcaatatgg ctgtgatttc
     1981 ggtataatag catttgttct gatataattt aaaaaggtat gttatatgaa ataaatacta
     2041 cctcattagt ttggacggag gtgaatggaa tgccaaatat taaatctgca attaaacgtg
     2101 taaaaactgc tgaaactcgc aacagccgta atgcatctca acgttctgca atgcgtactg
     2161 ctatcaaaaa atttgacgaa gcagctgcaa acaacgcgga caacgcgaaa gatctttacg
     2221 tagaagcatc gaaaaaatta gatagcgctg tgagcaaagg attgattcac aaaaacaatg
     2281 ctgctcgcaa caaatctcgc ttagctgcta aattagctaa ataataccga gttcggtata
     2341 aaacatcaca ccttgtgtgg tgttttttgt ttgcaaaaat agctttgtct taaatgacaa
     2401 agctattttt tatactctct tttgccgatt atcttgtaat tcgaataaga accattcgag
     2461 tttctgttct ttatcaccaa agccagtttt catttccaag tcgatttcag ctaatcgttt
     2521 taaagcttga tttaattgta attccgtgaa attcttcgct tgttttgatg ctaacttaac
     2581 gcggaatgga tgcactttta gtttagtcgc agcttgttgt tgcgaataac cttgttgttc
     2641 taatagcttt aattggttta acaacctgaa ttgactagaa attaatgcca gtatcttgat
     2701 aggctcttct ttttgtttta ataagtcgta ataaatccga agtgccccgc tgatatccat
     2761 agcaatcatc ttatcaagta acaaaaagat attttgttca agtgaacgta caactaaaga
     2821 ttctacatcc tgaatggtaa tttcttttga atcaaaacaa tagagcatta atttttgcag
     2881 ttcattcatg gcagttgtta gctgaccact agttaattcc accagtcgag taatagcctc
     2941 ttgtgacatt tgcatgttgt tctcgcttaa ttttgcttca atccattttt tcaactcatt
     3001 ctcattaggt cgttttgcct ctataacagt agctgttttc ttgagtaact tagtaagctt
     3061 tttacgctca tctaactttt ctacgcgcgc tacaaagcat aatacggaat aatccactgg
     3121 ttcattgaga taagcctcta attttgcagt atcatgctcc actttgtttt tacttttttc
     3181 agttgttaaa aaaagcggat tattggccat tactaaacgt ttatcaccga aaaaaggcat
     3241 gctttctgct tcttgaatga ccacttctat tggcatttct tctaaatcta aattagcgta
     3301 gttaaattct acttcttcgc cttccaaaat gttatctatt aaaagttgct tcgtttcgtt
     3361 aataatataa tcttccgtac caatgattaa atacaccggc attatttttt tggagcgtat
     3421 ctgtttccat tctggcagca ttcatttcgc ctcgcttcac tcttatttct ctttctatgg
     3481 taaaacatga aataagagat agcaagtttt atttcaaagt cgcttcaaag ccttttccaa
     3541 atgtataagt tatttcccct tgtacatctg ttcgtaaaat tgttactcct gccttttcta
     3601 gcgtattaat agtttctgcg tgtggatgac caaagcgatt gtttaacccg catgaaataa
     3661 ctgcaaaagt cggcttcact ttttgaataa attctttgga actggaggtc ttgctaccat
     3721 gatgccctac tttcaaaata tctgctttga taggctgttc tgatatgccc ttttctccgt
     3781 tcgcctctaa atcaccagta aaaagccata ttttaccatc taatactgcc tttaatacaa
     3841 tagagtcatc atttcctcct tctcctgctt tatcgggata taagcattcg aaactgtttt
     3901 cgccaatttg ccacttggca ccggccaaaa taattgtctg tttcactttt ggcatcgcag
     3961 cgagagcttc tttcatgatg ggtttgtttt ctgctccttt agcaaaaata agctctttaa
     4021 tagtaatgtt tttctgtaaa tcatcaagtc cttccatgtg gtcagcatcg ctatgtgtaa
     4081 taattacttt atctaagcta ttaattcctt ttgattttaa cactgggcta agtgtacttc
     4141 cgcctattgt aaatggtttt cttttcttag cccatgcttc tttttcaaat ggaagttggc
     4201 ctccagtatc tattaaataa ttcccttgat tgtatggtag ttgaattaaa atgctatccc
     4261 cttgccccac atcgataaaa ctaacttttc cactaaaatt aaaactagct aaataacata
     4321 ataaacaaaa acaaatgaat atccctaaag gaaacttttt cttttgccac tggctgaaga
     4381 cgatgatgat agttataatg gttagcacta atataacggt gtttggcctc cctgttacaa
     4441 tagtctgatg cggaatcttg gcgaaaatgt aggttaattt ttctaccaat tgtataaaga
     4501 atgtaagcat tgcttcagga aaatgaaata tttctgttga aaaaaaagac agcacaaaca
     4561 cagttagaca acctggcaaa ataatcatcg taaaaatggg cacataaatt aaattaaaga
     4621 atatccctac ccatgaaaat gagtaaaaat gatacatcat gacagctgaa gacatgatgg
     4681 ttgaaatgaa ggaaatagca agtgacttag taaatgcgtt ctgctgtctg gttagtattt
     4741 gtcttgacga taaaataatt ccaaacgata ctgcataaga tagttgaaaa cctacttctc
     4801 taatgatata cggttgcaag aggaaaaaca gaataaagga caaacaaatg gcagaaaacg
     4861 aactccattt agtagtatat ttttctgaca ataaaagtaa tgctgtcatt gtagcagctc
     4921 gtatgactgg cggatttgct cctgtaagga taacgtaaaa tggtaagaaa acaagtagac
     4981 aagtgatggc tctatccctt gtaataccga attttagtag gagaaaatat attgccccta
     5041 ttaataaatt cacgtgaagt ccagagatag ctagcaaatg gacaacaccc atttgttgat
     5101 aaacttcata catttcgggg gaaaagccgt ttttctctcc actaattaat gcgagacaat
     5161 aaggagaaat ggttggagat attttttcgg ttaaatgggt aattattttc aaacgtatat
     5221 tttgaagttt cattaggaaa gatggtgaga attgactgga aatagcaaga ttacttgctc
     5281 gaagtatata gtgtacattt tggttcttta aataagtttg gtaattgaat tgattttgat
     5341 tgcggttgac ggaaggtgtt tctatatttg cagaaacaga aataaactgt ccgtaatgga
     5401 gcttttttag tttttgttgt tcctcttccg ttgtaatttt ataactcaat tgaaattttt
     5461 ctttttcgca gcgtacaaaa gtttgaaaac tatctccatc gatttttaaa ttatctataa
     5521 tttgacagtt cccattatat tcagttgctg taaaagagga agtattgaat ttttctatta
     5581 caaacaaaaa actataggtt agaaaataaa tgaggacaaa aagaagaata attttggatt
     5641 ttttaataaa agcaattaaa cctagcaaac aaatacatat gggaacgata gagcttgtaa
     5701 aattcgcaca aacaatagct aaaacaataa tagctaaata tcgctcgata acgtcccctc
     5761 cctatttagt tcaatttctc tgagatgttt tgataaagtt gctctgcttt ttctggttcg
     5821 atatttactt ccactgcagc ttcttttact aaagtatgca ttttttctcc attccaattg
     5881 tttacttgaa gaacagattc atcaaattct actttttgta attcgacgcc agcaatgtta
     5941 aataattcta aagcgtacgg atggtttttg tagtctttag cgaaatacac tttctttata
     6001 cctgcttgaa taatagattt cgtacaagca agacaaggga aatgcgttac atataattca
     6061 gctttatctg tcgttgcacc aaatttagca cattgtaaaa tcgcgttcat ctctgcatgt
     6121 attgttcgaa tgcagtgacc gtctacaaca taacagccgt gttctgcaca atgatcgcca
     6181 ccagcgatgg acccattata tccgcccgca ataatacgtt tatctcgaac tattgtcgca
     6241 ccgaccatta gtcgtgtaca cgtgctccta gatgatatta gatgactttg cgccataaaa
     6301 aactgatccc atgcgattct ctgcacatta aaaactccct tatgatttga taaatattag
     6361 tataggtgtt tagaaggaag ttcgtcaacc acttttatta attaacatcc aaatattctt
     6421 ttaatttctc tactgttttt tcgccgatgc ctgaaacatt ttttaaatct tctattgttt
     6481 ggaataagcc ttctttttct cggtactcta ttatcgctgt tgccttcgat tctccaatcc
     6541 ctgggacttg ttgtaaatcg tccttcgttg cactgttaag gttaattttc gcagaaccgg
     6601 tacttgcttc ttctgtgtta gctccttgtg ttgcgggacc ttcttctccc tttttataaa
     6661 cgtagatact catctcgtct tttagttttt cagctaaatt caatttactg caatcggctt
     6721 cagctgtgag ccctcctgca attttcacca catcttgaac tctagcgtcc attggcagtt
     6781 tatagacacc aggggtcctt actgctcctt taatgtcaat ataaacttca tttgataatt
     6841 ttgtttcttc tttcttcggt ttttcttctt tcgttactgc ttgattggca gttacagcat
     6901 cagatttact atctggtatc caaatataaa ctaaaccagc acaaagaata gcaatcccta
     6961 ttaagatata atttttgtgt ttttttacta agtccatcat ccatatcacc gtccttaata
     7021 tactattcgc catgctagga caaattcctt tttgatagtt taaggtgaaa atcgcacaaa
     7081 aaaagaaagt aataatgaaa aattactttc ttgctgcgaa aaagattctt tcgctcgtat
     7141 tattgggttt ttcatgacta aaatcggcat aaatatcaat tttcgtaaaa ccatattttt
     7201 ttaatatatt ttcataagta gcgattggat aggtgcgttc tttatgcagt tcgtccacgc
     7261 gattatacgt gtcatcttca tctaaaatat agaaggtaag ttcatgttcg acagaatgcg
     7321 gatgttcgcc aggaaatgaa ttccaaatcg tcgaaatctc ttcatcgcta tctccgtatg
     7381 aataatcttt aaacccttga tctactttaa agacggaatg tacgtcaaat aaaaataagc
     7441 catttggttc taaatgcact gatacagctt gaatagtagc ctcaagagct tgttctgttt
     7501 ccaaataatt aagtgaatca cagaagcatg taactacatc aaacgtttgc tttaatgcta
     7561 acttggacat atcttgttct ataatcggca aattgatttc agccgctgcc actttttctt
     7621 tagcaactgc caccatttct tttgataaat ccacaccagt aacttgatga ccagaaaaac
     7681 ttaaacgtag cgcaaattca gctgttccac aagccaaatc aagtattttt ttaggagtat
     7741 ctccaatgaa atgagccgtg aattctagcc attcatcata aagttcggaa tccattaatc
     7801 tatcatagaa acccggaaaa tattcgtaac tcatagtaat ttctccttaa aaaaacagac
     7861 gagaattccc tcgcctgttc tgttttttat taagaaataa acgcagcaga aacgtccacg
     7921 agtggcgcat ctccccaaag tttttctaag ttatagtaag aacgttcttc tttatggaac
     7981 acatggataa taacatcacc taagtcgatt aaaatccact ttgccgcatc aaaaccttct
     8041 aaacgcttca catctacttg gttttctaac gctttttctt taatttcacg agcgattgct
     8101 tgcacttgtt tgtctgaatt accgtgacag ataacaaagt aatccgcaaa gcttgataac
     8161 cccttcatgt ctagtgctaa aatatcctct gctcttttat cgtctgctgc cttagcagtc
     8221 agcattaatg tatcataact gttcaaatta ttaatagtct ccttccaaat ttaaattaac
     8281 gaaataattg taggcatcca gtgtatctgg aaaaaccaat tgttgctttt tgactaagtg
     8341 cgtaatcgta ttcgataaag cgaataacat tgcttcgtta agcgatttaa gtgctaatct
     8401 gcgtgcttta tatacgccgg gaaatgttct tccttgttct gtatagtcag ctaagtagat
     8461 aagtttatcg aaatcagaca tcgtcgcgct tcctgtcgta tgcagacgaa tcgcttctag
     8521 tatttctgta tcagtaatac caaattcttt ttctgccaga taggcgccaa caggagcgtg
     8581 ccacagcgaa cgatgaaaag aaagtaaacg cggatcataa ccctcgtcct cgataatttt
     8641 tctcgcttta tcatcgtcat agtacttagc ataatcatgt agcaaagcgg ttattcgtgc
     8701 tttttctaca tccatatgat aatgttctgc aagttctaca gctgcttttt ctacgcctaa
     8761 agtgtgttta aatcgagcat taggcatagc tgcttctact ttttttagca tttcatttct
     8821 ttccataaag ttgatgctcc tttatatatg accatacttt ttctggtaaa aaggtgctcg
     8881 cgttctcaat attatttcta atttccgtag aagaaatcgt cgtttctggc atattgattt
     8941 taacgatatc atacggaacc tccgtctgat aactggggcg attaacccca acgaatgtca
     9001 ccatttttac taagtcatct atatgatacc actttggcaa atattctacc atgtccccgc
     9061 cgataatgaa ataaaaatct gtatccggct gttcgcttat catatcacgc attgtgtcat
     9121 acgtatagga ctttcccgcg cgcatgagtt cacgtgtatc aatttcaaag gaatctatac
     9181 cttctatcat taattgaagc atttctacac gctcatcatt tgaagccata ccactgatat
     9241 gtttatgagg cggaatttta ttaggtaaaa aaagaatttt ctcaagtcct agttgcttct
     9301 tagcctcttc tgccatgcgg aggtgcgcta aatgcggcgg atcaaaagtc ccacctaaga
     9361 tgccgacttt atgtttcatc gtaggttcct cccgatttat ggcaacttaa tttgttgctt
     9421 gtttacagaa gttttgtaca gaataatcgt tctgccaatg acttgaacga tttccgcgcc
     9481 tgaacgagca ctaatttttt ctgcaacggt ttgtttatct tcttcgcaat tttgtagaat
     9541 cgagatttta attaattctc tcgcttctag tgcttctttt acgtggataa ttaagtttgg
     9601 tgatacgctt ccttttccta cttggaaaat gggttggata ttatgcgctt cttttcttaa
     9661 aaaacgtttt tgtgtagctg ttaacattag tttcctccta attgttcgag tactgcttct
     9721 ttcatcagtg atcgctctgg ttttatccca gtccatattt caaaggcaag tgccccttga
     9781 ttaacaaaca tcggtaagcc attttgggta atagctccat ttttctttgc ttctttcaaa
     9841 aaggctgttt cggctggatt ataaataata tcagaacaaa tcgttccttt ttttacatta
     9901 gccagcgaaa ttgggctttt gtttttggaa gcttctaaac cgatagatgt tgtttgaatg
     9961 ataaccgtaa aatcagccag ttgtttttct gcttcttcta gtgtgacggc gtgatgattt
    10021 tcattatctt tcgtcatttc tatcgctttt tccgttgtac gattagtaac ggttatttta
    10081 gcatccgtgt gagtggaaag cgctaggtaa attgccttgc ttgcgccacc cgcaccggta
    10141 attaaaatag aatcatcttc tgtaattgag cggatttctt ctaatccttc taagtagcct
    10201 ttgccatctg tattaaatcc gtaccatttg tcctcttttt ttagcacagt attcactgcg
    10261 ccagaagctg ctgcaagatc ctctaattca tctaaaaatg gtaaaatacg ctctttaaat
    10321 ggtgttgtaa tattaaatcc acgcactcca gaatccatta attttttgat ttctgtttca
    10381 aaagcgtctt cttctattaa aacagagtta tactccgcat tcattccaag ttcttggaaa
    10441 atccgatttt gcatagctgg tgataacgag tgacgaatag gatttccgat aacaacatat
    10501 ttttccaaat gataggcctc cttcgtttta aacgagtgat gtccggatag ttgcgctcac
    10561 gccttcagga acccacgcag taactttcgc gccgccttct ggaattgtca cccagccgag
    10621 tccggaaaag acaatatccg ctttttcttt tattgtaaaa gaatacggaa ctagcttagg
    10681 aagtgtctcc atcccttctt ctgtaggcgg ttgaagcact attcctgctt gtttttcgta
    10741 taacgcatcc gctttttcta attttgtccg gtgaattggt aaattattag atacatagac
    10801 tactaatgat ttgcgaccac ctgaaacata atctaagcga gcaagcgccc ctaaaaatag
    10861 ggtttgttct tcgtttaatt ggaagacagc tggttttact tcttttttag gtgtaatagc
    10921 ttttaacgtt gttgtatcaa tgaaatgtgc catttggtga tggttaataa ttcctggtgt
    10981 gtcaacaagt acattgccat ctgctaatgg gatttcgatt ttatcaagcg ttgttcctgg
    11041 gaattgagag gttgtaatga cattgttttc cccggatgct tgtttaataa tacgattgat
    11101 tagcgttgat ttaccaacgt ttgtacaacc gacaacatag acatcttgtc catttcgcaa
    11161 ttcttcaatt ttctctaaaa gagtatcaaa accgtggcct ttctcagcgc taactaatac
    11221 gacatctgtc gccgccaagc cttgctcttt ggcacgagtt ctcatccaac gtgtcaactt
    11281 atcacgtttt aatgattttg gtaatacatc ttctttgttc ccgacaagta ataccggatt
    11341 acttcctgca aaacgaggaa gtccaggtaa ccaactacca tcgaaatcaa aaatatctac
    11401 tacataaaca attaaagctt gtttcgaact aatttgattt aaaatacgta aaaaatcatc
    11461 gtctgttagg gcaacatctt gaatttcatt gtaatgtttt agacgaaaac atcttttaca
    11521 aataacttgc tcattgttca gggatgattt tggagcatag ccgattttat cagggtcttc
    11581 tgtttgaata accgcgccac aaccaataca tctaatttct tctgtcaaag tgattcctcc
    11641 cacttaattt ggtttttctt tgctaatcgt tttaaaataa cgctttccat cattcgattt
    11701 aattttgtcg ccataccatc tgtttgtttt acagggcgaa caaaaatagt tgttaatttt
    11761 tgacggtttc caccgaatat atctgtcata atttgatcgc caatcatcac agtttcttct
    11821 ggtgttgcat ccatttcttt taatgcccag cggaaattag cgcctaaggg tttttttgcc
    11881 cgggctaaat aaggaacatc gattgctttt gccacacgag caactcgttc ttcgttattg
    11941 ttagaaaaaa tcattacttt gattccttct tctttcaata tagtaaacca gttgataact
    12001 tcatccgttg cgtctagttg atcccatgca agcagcgtat tatcaagatc agtcaaaata
    12061 gtagtctttc ccattttgcg aagttgtgct gctgtaattc caaatggagt attcaacatt
    12121 ttatctggtg agaattgctt taacacgtat tggcacctca ttcttttatt tagtacagtc
    12181 tattctataa tacattcaat tagactaata atctataaat tttaccatct ttctgcttat
    12241 tttacaaaaa aaccttagaa aaatgctata atatgaaagg aaacgttatt tttaaggagg
    12301 taaacaaatg tcaaaagatt atgcattaac atgggattta gaaaatatat atgctggcgg
    12361 cagcggctct gaagaattac aacaaacgct tcaagaggta aaagctgatt tagacagctt
    12421 tgttgtaaat gtttcggagt gggatgttcc tgaaaatgtg gaagcctctg ctgaattttt
    12481 acttctcgtt aatcaaaatg cagatatatc taaaatttta ctcactgccg gatcattttt
    12541 agaatgtctt gcttccgctg atatcaatga ctcgcgtgca aatgagcttt cggcgttaat
    12601 ttatcaatac gttgcaactc tagctacggc cgaagatgaa tggcatgaca aatttgcaca
    12661 agtttctgac cgtgtttggg acgaattaat ggaacaaaat ggtttatcgc aaattagctt
    12721 tattttaagt gaagcgcgta cgaaccgccg taaaaaaggg agtaaagaac aagaagcagc
    12781 tattaattct ttagctgtcg atggttatcg cggctggtct gatcattatg ataccattgt
    12841 cggtaaactc cgcatgcatg ttaccattaa cggagaagaa aaagatgttt ctgctggcca
    12901 agcgctaaac ttattaaatc accctgatcg cgcggttcgc caagcagttt ttaaagaata
    12961 tacacgtgta tggcaaagtg aagctcgttt atttagcgat acgttaaatc atttatcagg
    13021 attccgttta gctacatatg aaattcgtaa atgggataat attctagatg aacctcttgc
    13081 aattaatcgt ttagatgagc aaacgttaaa atctatgtgg aatgtcatcc aaacgaacaa
    13141 gcctactttt gttcgattct tagatagaaa agcgaaatta cttggccttg aaaaattaag
    13201 tttttatgat gtagaagctc ctcttgtctt ttcaagcgaa cctaagaaat attcgtatca
    13261 agaaggcgct gaatttatta ttgagcaatt taacaaattc agcccgaaaa tggcaaactt
    13321 tgcgcaatca gcgtttgaaa aaggttggat tgaagcggaa gaccgtgata ataaacgtcc
    13381 tggtggtttt tgtaccgact tccctgttga aaaagaaagt cgcattttca tgacatatga
    13441 tggcgctcca ggaacagtcg ctactcttgc tcacgaactt gggcacgcat tccattcaca
    13501 cgtgattcgc gatgaaccct ttgaaaatac tgattatgcg atgaacgtgg cggaaaccgc
    13561 ttcaactttt gcagaaatga ttattgcaga tgcttctgtg aaagatgcaa aaacaaaaga
    13621 agaaaaaatc acgttgttgg aagataaaat cggtcgtagt atcgccttct ttatgaatat
    13681 tcatgctcgc tttatttttg aatgtaactt ctatgaagca cgtaaacaag gtgtcgtttc
    13741 ggttgatcga cttaacgctc taatggaaga agcgcaacga gaagcatact tggacgcctt
    13801 ggatgaatat catccacaat tctgggcttc taaactacat ttctacattg ctgatgtacc
    13861 gttttataac ttcccgtaca ctttcggtta tttgttctcg cttggcattt accataaagc
    13921 tcaagcagaa ggtgctagtt acgaagataa atacattgca ctactacaag acactggttc
    13981 gatgacaaca gaacagctag cagaaaaaca tctgggcgtt gacttacgta aagctgactt
    14041 ctgggaagaa gctgttgctc ttgctgccaa agatgtagaa gatttcctta ctttaacaga
    14101 agaatatatc aaataaaaaa atgcctggag cttaaaaact ccaggcattt tttaaattgt
    14161 ttttagtaat tcgatgatac atgttgcgga ttgtttcgct gctaagtgaa tgaattcatc
    14221 aaatgaaata gtcgcttctt gattcgctaa atctgaaata gcgcgaataa ttaagaaagg
    14281 aatatcaaat tgataagcaa cttgtgcgat tgccgcagct tccatctcaa ctgcttttac
    14341 atctgggaaa aaagtgcgaa ttgtttcgtg ctgatctgga cgcataataa atgaatcatt
    14401 cgtaacaacg agtccataga ctgctttgtt ttcgcttgca gcaaaatatt cacggtaaat
    14461 ggtttccgct tttttaagaa gtacagcgtc tccttgataa aaagctggca ttcttgggac
    14521 ttgaccgtaa gtgtaaccaa attccgttac atctacgtcg ccataagcta atcggtcaga
    14581 aataataaca tcaccaacgg ctaatccttc cgccattccg ccagcagaac cagtgttaat
    14641 aattacttct ggtttaaaac ggtccgccat aagtgttgtt ccaagtgcgg catttacttt
    14701 accaatacct gactccaaaa gcactacttc tttgccagca atttcgccaa cgtaaaattt
    14761 agctccgcca ataacaattt cttctacgct tggcatgcta ttttttaaaa gttctacttc
    14821 ttcttccatt gctccaataa taccaattgt cattatgtaa cctccaaaaa agcacagtcg
    14881 ttaacagcta acttctgtgc ttttatcttt tgtcatttgt tttaagctct tccactttgg
    14941 ttggttgcca tccttcaccg tcaacccagg taatataaac acgatatgct ttgtctgggt
    15001 tttctttagt agagagtgta ccaattgctt gtgtcgcagg atcagctcct tgctctacaa
    15061 accaaagcga cgtatttgag attgggatat cagttgctgc agaaaaagct ttacgttttt
    15121 cttgccaatc tacacttgtg gaactgtacg aattcacatg atcaccagtt tgttctgtac
    15181 caataggttt ccaatctttg gtaataactt tcgctacatt gggatcatcg ctttcggttg
    15241 tttcagttgt tttatcatct gaagaatctt ttttcttttc ggatgattta gcggcatctt
    15301 ctttttttgc agtggaagat gccgttttgt tatcttgttg cgtaggatca ctctctgttt
    15361 taaacagcac aaaatacaaa ctaccaatga taagtaagct taccacgata attaaaacgt
    15421 ttaaaactaa attagtcttt tttcgttttg tattttgctg ggaacgagat ccttccacca
    15481 agttttgttt aattcgacgg ttatttgatt gtcgtttgtc tgccatttgc attcaccacc
    15541 ttataagtaa ccgctgtata aaaacatccg ataatattaa gatgcagtga ttttttcgat
    15601 tttaacgctc atgtcaccag ctggtgtttg gatagttact tcttcccctt ctttatgacc
    15661 aagtaaacct ttggcaattg gagaatcatt ggaaatttta ccttcaaacg ggtctgcttc
    15721 agcgctacct acgattgtgt aagtttcttc ttcaccgtct ggtagttcaa tgaaagtaac
    15781 tgtatttcca agtgttacta aaccattatg tgcttcagca gcatcaatga tttgtgcgtt
    15841 acgaatcata ttttcaatag tagtgatacg accttcaaca aaagcttgtt cgtcttttgc
    15901 ggaatcatac tcggagttct ctgataagtc accaaaacta cgggcaattt tgatccgttc
    15961 tactacttct ttacgtttta ccgtctttaa ttcttgtaat tcattttcta attttgcttt
    16021 cccatctagg gtcattggaa atactttttc tgtcgccaat cgatttcgct cctttttgtt
    16081 tgttcattat tgtatagaaa agcacggaga tatcgctccg caccttcatc aaaaatatta
    16141 ctactcgtca gaaagattaa cacgccacgc tagaaatagc aagcaattgc cactcttttt
    16201 actagaaaaa ttttacctta aatttctcta tttgacaagt gatacctgtt gtttatacat
    16261 gtttttgcaa aatggattca atttttgttg tcattaagtc gattgcaacg tgattctctc
    16321 cgccttctgg aataataata tcggcaaatt ttttcgttgg ttctataaat tcattgtgca
    16381 ttggtttaac aacagaaaga tattgctcga taacagaatc cattgtccga ccacgttctt
    16441 tcatatcgcg taaaagtctg cgaataaaac gaatatcatc atcggtatcc acatatactt
    16501 taatatccat caaatcccta aggcgtttat cttctaaaat taaaattcct tctaaaataa
    16561 taacctctct aggttcttgg atttctactt ctttttttcg cgtatatttg gcataatcat
    16621 aaatcggctt ttctatggtt tcatagcgac gcagtgcggc aatatgtgaa atgagtaagt
    16681 ccgtatcaaa agctagtgga tgatcataat ttacttttaa tctatcttca aaactaatat
    16741 tggcttgatc gtgataatag acatcttgag caatcatcaa aatcgagtgt ccgctaaaat
    16801 gatcacaaat ggctttcgtt acactagttt taccagaacc tgaaccgcca gttacgccga
    16861 ctacgattgg tttttttgtc atgatacgcc tccagttttc tttcttttgg aaatagatag
    16921 gccgtcccct agtggaatgg tcgttgtttc aaaatcagga tgcgtcacta aaaaatcgtt
    16981 aaaatggcgc attttcctag caacacgtaa tttgcgttgt ttttctggtg tcatatctag
    17041 cgctaaccct ttaaaaagaa cattatcact ataaataacg ccattttcag ctaaagaatc
    17101 ggtataaata tggaaaaatt tctcatattg cgctttggct gcatcaataa atattgcgtc
    17161 aaatggaccg tgagccaaaa tttcttcagc cccttcaata gcatctgtta ataaaacttt
    17221 cactctgtca ttagccccgt agcgctgaat attatgtatt gcttgctcat atcgttcttc
    17281 gtcgcgctca accgtgataa tctctgcatc aggaagttta tctgccattt ttaaagcgga
    17341 gtacccaatg gccgtcccaa gctccaatat gcgctttggt ttttggatat ctaaaatctg
    17401 taataagcag tacaaagaat ctggttccat aatcggtact tcattttcct tcgcatacgc
    17461 ctctaattct tcaaaaaaag gactgctctt aggaatgttt tttaataaat aatcatgaat
    17521 aatatcattc actgctagga tcccctatct taacaaacaa agcacctgcc aaaaacatgc
    17581 taaacatgct tctgacaagt ggttgtttta attatttttc gtaatatgct cttcttttag
    17641 tttattgtgc tcttctaaag ttttagagaa gtatacttta ccagtttttg tatttgctaa
    17701 gaagtatagg taatcacttt tttctggata aagtgctgct tccatcgaag agtctccact
    17761 atttgaaatt ggacctggtg gtagtccatt gtttttgtat gtgttgtatg gtgaatcgac
    17821 ttctaaatct ttgtaagtcg ttttactttt gtgttcacca agcgcataaa gaacagttgg
    17881 gtctgtctgc aatcgcatat cttttgctaa acgattataa aatacgctgg caatcatttt
    17941 gcgatctacg ttttcagttg cttctttttc gataatggaa gacatcgtta agaatttgtg
    18001 tacagacatt ttttgtttcg ttagttcatc gcggtactta gcaatgttca catccgttgc
    18061 cttgaccatc tctgtaataa tttgttctgc agatacatcc gttcctttga aggtgtaagt
    18121 agctgggtat aaataacctt ctaatggatg tttaatagat ttgtttaata cgtcgtttgt
    18181 tactgtatct ggatatgctt taatcatgga agcaacaaat tcaggatcgt ccattgtttt
    18241 aagtacatct gcttttttta gttttggttg ataagcaaca attctatcag caatttggtc
    18301 taacgtgtaa ccttctggaa tgaccagttt agcaggtgct accgtttttc cttcttgcat
    18361 ttttttgacg atttgatctg tgttcatcga cggactgaat tcatagttcc ctgcttttaa
    18421 attcgtatca ttattatatt ttacataaaa cgag
//
LOCUS       DASDXX010000036        18306 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.036, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000036 DASDXX010000000
VERSION     DASDXX010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18306
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.036"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            78..302
                     /locus_tag="U0280_000997"
     CDS             78..302
                     /locus_tag="U0280_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEM2270951.1"
                     /translation="MKYCLVEKDTCIACGACSIHAPDVFDYDTEGLAFNILDNNTGTK
                     VIPEDLVETVIDAEFACPSLSIKVSDSSFH"
     gene            complement(366..6377)
                     /locus_tag="U0280_000998"
     CDS             complement(366..6377)
                     /locus_tag="U0280_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial Ig-like domain-containing protein"
                     /protein_id="HEM2270952.1"
                     /translation="MIKSLYIRRSLMMLITSLLVVSQLNLTVFQAFAEEKGEEPLSYE
                     VQEELSKDKKKAKLKIKATSNNNQVEILSIETPDGNKIEGKEAEYTAEKNGDVNFIIS
                     YKENIEGKETEIKTFKASYEVKNLIIEKEEANQSKDSVKQNETKAPLKNNQLKSGNDA
                     TVTLNIPAYDGTAWANGDIKDVNVTVDFSNSTSTSKEVEFTLPDGMRFVSIPVPSSFQ
                     VSTGVDSGVINRLSAGDPIGTAITSVTIPNKETTYDKATFGTVNYKLTPGTEKVSFNF
                     SVRVDANKYYGATDLKAPIKVEAFVGDNKMAIASEEKAIRAEGNKVVGYANQTHVSTM
                     FRNWYKSFRTPDVLASTDDEDSYAYTKSYSVVNGMNQVDERGTNIFSPKNVSTTLYYP
                     EGMEYVGVVNEKYALLNENANTTITHYPEENKVVFDFKQQNFKGVTDTVYAIKYKIPK
                     GTPAGTYTAPKVPHAVITTYDDKVFESDALTNNSTDLTTKATLDACRVVDSTENKMAL
                     IVGNKNINPDNETWAGNVRINNKDTAGTKTNQVFQIEFDSNWEASIVNIPFDGNRKDN
                     DITNIQYKTNFDDTYQTYNGNLPKNSMKNIAILEADAVGLQPGEYFTEVKANVGDFST
                     GYTSYSESGGFGEESTNSYGIVKPGISSVQFKVSIWDEADEVNTKVSGTSVYSVADNI
                     TTAANGTANFYNEQGQVIKTAGAGDKFTTKATLVLFNYPYGTRTVLNDPEVYLRQLDG
                     TKILPSSIKLTDQDGEEIEFSIKIETAKNGEKVYVLKTKDATVGRYVGYPSKHKFLNL
                     SYDTTIDVTLDKSLHTDIQQLLAWGGPNVKAATAANTFMDTGLDVNQNGIENERLLSA
                     NSSTLSVPKQDAVTVETFLNLAGEGAKASYVEGDDSTVSYFTPGTEADYTVRVTNTST
                     GIASAFELYIPIPKTGQNFGSKFQTETFKWDMKLNDAVQLTDEQKAQFDISYATEANK
                     NNYESESVYSAVPSDYGKVNMVRIKVKTKIDPGETQTIKVPLKVDETFNSATEGNKIS
                     ERDVYNPYYRVTTNAYSGTLPGTKVGAELIILEASGFLFQDKDANGLYEKAQGDTALA
                     NETVELYKWNENTSNYEPFLKNGEPVSVKTNADGKYTFNYNLNLSYGKYAVKFPERAG
                     NQFTLKQVGQDNTINSTVSNKGTDKGWVKEIDPAQPVSQNINAGYMEYAPDNDLKVNL
                     SAKIVQAGKSLKVTLPKVRATSGEAVEDTIEPSFFHNIQAITDGYKWTSNDTTLATTQ
                     TANDGSGIIVGISAGNKAIATTDIGITIKDIFDTEKKSTAPVYITEPSATIDQKEGLI
                     LGAMNFSLEYKDSNKLTETEAITLAKTASFEEVKTGVLSTAQDCTSSVKVDAKQLKAI
                     QEGSNQGGTYPLTYQVAKNGKTAEVVIQVKVEKDLTTVNVHDSILYLGDTWTATDNFD
                     SALNKVGETVPFGDIQVEGSVDTNTAGIYSVTYTYKGVSKKAKIEVKENLTEINAHDS
                     TIYTGDTWRAGDNFDSGLDKDGNALSLKDLTVIGTVNTNLAGVYTITYKYEDTVSSIT
                     VTVKENKKGINGHDSSIYVGEAWTAADNFDNAVDKDGKPVSFADIKVKEEPKVDVNKA
                     GRYQITYNYDGASTTVTLTVKEIKTAINAHDSILYIDDNWSAKDNFDSARDKDGNIVS
                     FNDVQVLGTVDTSQAGTYPITYVYAGITKTIQVIVKHPKTAVRAHDSVIYVGDNWKAQ
                     DNWDNTLDKAGQKVKWKDITVKENPAVDVTKPGVYEVTYSYDGISATINVTVKPRKTT
                     VKIHDSSFYAGNSWNAKDNFDYATNKAGEKVAFKDITVAGKVDSKTPGTYEISYVYDG
                     VKAVAKVTVLKNHSILMVKDRVIKVGEKWNAKDSFIQATRRDGKNIPFSQVKVQGKVN
                     LNKAGKYQVIYSVDPNEGTEDAGKQMLSVTATIQVENRGDAGLQDNEPRSVKDNNQRA
                     ANSNDIKLIPKTGDQTNQWVLWAGLCLTGLAMLLWGFALRRRKVK"
     gene            complement(6643..7254)
                     /locus_tag="U0280_000999"
     CDS             complement(6643..7254)
                     /locus_tag="U0280_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM2270953.1"
                     /translation="MKNYSMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLDFSDIP
                     ALIGGLLFGPLAVILVELIKNVLLYIVSGSPVGVPIGEISNFINGIVYVLPIYYLFHW
                     FRSTKGMVFSTAIGTLVMTVVMSIFNYFILLPFYIKLGGLPADTDVAWLVTYAIIPFS
                     LLKGVIVSAVFLLLYSRLKKWIAKNQTVKERRKFEKKQQEVSH"
     regulatory      complement(7444..7566)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(7696..8214)
                     /locus_tag="U0280_001000"
     CDS             complement(7696..8214)
                     /locus_tag="U0280_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEM2270954.1"
                     /translation="MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTA
                     SISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLK
                     TGERYLAATSFLTFVALDADGKTVEVPLVKPETEEQKRIHAGAEARSIARKIRLKENQ
                     SLAESLSTDIPW"
     gene            complement(8230..10020)
                     /locus_tag="U0280_001001"
     CDS             complement(8230..10020)
                     /locus_tag="U0280_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEM2270955.1"
                     /translation="MKIWNSIVGKIWSTIILLLIGILVISGFLVAMIYEKNNITQITN
                     ELEDKTASIITVMQENNEVISAENNNDSALILLDDTMGVIIEQNGKSVYQSQSPDTIS
                     SASANKLIQDKTLDKALEKDNSVTMKYNFKTEKSSLPVEISAQKFKLANGETGVVYVY
                     QSYHDILKVNEKTMSTLIISGIIAIVITSILSFVFSSRMAFPLREMKKIAIAVSKGNF
                     DNRVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDK
                     TIILSNPPAEEFLHNWFFSPENTEKVLIPVALNELLNDTLEKKESQVGEITFADHTYV
                     AILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAII
                     DGVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKV
                     ISNFDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVI
                     LKQTIDEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVK
                     NIVEAHNGKISVESELGKGSDFIITLPLYK"
     gene            complement(10121..10837)
                     /locus_tag="U0280_001002"
     CDS             complement(10121..10837)
                     /locus_tag="U0280_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2270956.1"
                     /translation="MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMA
                     LNNNYEVILLDLMMPGKDGIEVCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYI
                     VKPFSPREVVLRVKAVLRRAKQSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIG
                     LTPKEYDLLYYLARSPDKVFDRESLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSED
                     AARMIVTVWGLGYKFEVPED"
     gene            complement(11020..11754)
                     /locus_tag="U0280_001003"
     CDS             complement(11020..11754)
                     /locus_tag="U0280_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM2270957.1"
                     /translation="MERLQKVIANAGITSRRKAEKLIQEGKVTVNGKVVTELGVKVSG
                     TERIEVEGIQLTKEEHRYFLFYKPRGTVSAVTDDKGRTTVADYFADIPERLYPVGRLD
                     YDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVVIDGRKTA
                     PAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLNLRGLN
                     AGERRELSHHEVKQLKTEARFGKNKK"
     gene            complement(11757..12353)
                     /gene="scpB"
                     /locus_tag="U0280_001004"
     CDS             complement(11757..12353)
                     /gene="scpB"
                     /locus_tag="U0280_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEM2270958.1"
                     /translation="MNREEQLGVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLEL
                     LSDRYNGSADRGLILLELAGTFQLATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIA
                     YRQPVTRMEVDEVRGVQTDGPIRTLVAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGL
                     NSLEDLPKLADPATDEPDQNEMDLFFDRFNQSKEQEEE"
     gene            complement(12350..13099)
                     /locus_tag="U0280_001005"
     CDS             complement(12350..13099)
                     /locus_tag="U0280_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEM2270959.1"
                     /translation="MVEMNFKVDAFEGPLDLLLHLIGQLEVDIYDIPMAEITDQYMEF
                     VHTMQEMELDVASEYLVMAATLLAIKSKMLLPKQELEIDYDTLEEEEDPRDALVEKLM
                     EYKRFKEAAKELKEKEAERSFYFSKPPMDLAEYDDGTKVAELDVSLNDMLSAFNKMLR
                     RKKLNKPLHTRITTQEISIDQRMDSVLEKLNLQVNHRLRFDELFEEQTKEQLVVTFLA
                     LLELMKRKLVEVEQAESFADLYVQGKGEEIS"
     gene            complement(13115..14425)
                     /gene="lysA"
                     /locus_tag="U0280_001006"
     CDS             complement(13115..14425)
                     /gene="lysA"
                     /locus_tag="U0280_001006"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEM2270960.1"
                     /translation="MTFERLGTMNVNAEGHLEIGGVDTLKLTEKYGTPLYVYDVALIR
                     DRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELYTAIKANF
                     PPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKASVLIRVTP
                     GIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFET
                     TGFKLAARRIMDKLVEWHQTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEV
                     RDVANNNDIDIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRP
                     ALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSNAGEVLAVFCTGA
                     YGYAMASNYNRIPRPSVVFVENGVDKLIVARETYENLVQNDLSL"
     gene            complement(14606..15424)
                     /locus_tag="U0280_001007"
     CDS             complement(14606..15424)
                     /locus_tag="U0280_001007"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM2270961.1"
                     /translation="MSLEKVNEAVAKIRESYNGTPKIGLILGSGLGVLADEVNNPTKL
                     SYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKEL
                     GVEVLVVTNAAGGVNELYSAGDLMLISDHINFTGTNPLIGPNDEHFGPRFPDMSEAYN
                     LALRVDARLIAQELNLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVII
                     ANHAGLRVLGISCITNMAAGILDQPLSHTEVIETTDQVRSTFLQYVKAIVAKIS"
     gene            complement(15443..16627)
                     /gene="deoB"
                     /locus_tag="U0280_001008"
     CDS             complement(15443..16627)
                     /gene="deoB"
                     /locus_tag="U0280_001008"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEM2270962.1"
                     /translation="MPDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGG
                     LKMPEMGKLGLSNIREIDGIKKAEKPLAYYTKMQEASNGKDTMTGHWEIMGLYIDTPF
                     RVFPDGFPDDLINQIEEKTGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVL
                     QIAAHEDVVPLEELYEICEFCRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYAL
                     KPFKPTVMDALKDGGKDVIAIGKISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFN
                     GMSFLNLVDFDALFGHRRDPQGYADALVDFDGRLVEVMEKLTDDDLLIITADHGNDPT
                     YSGTDHTREFVPLLVYSPRFKNGGSELELRKTFADLGATVADNFEVKMPEYGTSFLKD
                     LK"
     gene            complement(16656..17549)
                     /gene="xerD"
                     /locus_tag="U0280_001009"
     CDS             complement(16656..17549)
                     /gene="xerD"
                     /locus_tag="U0280_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEM2270963.1"
                     /translation="MNDLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLT
                     DPNTLERSDIVGFMAFARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETP
                     KQAQGLPKVLNLDDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLH
                     LHMGFIQTIGKGDKERIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGL
                     TRQGFWKILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQ
                     IYTHVTKLRLKDVYKQFHPRA"
     gene            complement(17704..18156)
                     /gene="fur"
                     /locus_tag="U0280_001010"
     CDS             complement(17704..18156)
                     /gene="fur"
                     /locus_tag="U0280_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HEM2270964.1"
                     /translation="MEGRIGRIKAQLHDASYKLTPQREATVRVLLENEKDHLSAEEVF
                     LRVKDIAPDTGLATVYRTLELLTELRVVDKINFGDGVSRYDLRQEGAKHFHHHLVCLE
                     CGSVEEIQEDLLEDVEKIVESKWNFLVKDHRLTFQGICTDCRQKSKKE"
BASE COUNT         5282 a         3868 c         2855 g         6301 t
ORIGIN      
        1 ctttttcaaa atatggtaca atagaaaaag aaaaaatctg gctgcaaata gttattttag
       61 aaaggaagcg tagaaaattg aagtattgtc ttgtcgaaaa agacacttgt attgcttgtg
      121 gcgcttgttc cattcatgca cctgatgttt ttgattatga tacagaaggt cttgccttta
      181 atatattaga taataacact ggaacaaaag taatccccga agacttggtt gaaacggtta
      241 ttgacgcaga atttgcctgt ccttcgcttt ctatcaaagt ttccgatagt tcatttcatt
      301 aataatacac gaaaaaggaa ggtttccgct gtttggaaac cttccttttt tatttttaat
      361 aaatattatt tcacttttcg tctccttaga gcaaatcccc atagaagcat tgctaaacca
      421 gtcaaacaaa ggccagccca taaaacccac tgatttgttt gatctcctgt tttaggaatg
      481 agtttgatat cgttggagtt agcagcgcgt tgattgttat cttttacgct tcgtggttca
      541 ttatcttgta accccgcatc tcctctattt tcaacctgaa tagtagcagt tactgacaac
      601 atttgtttcc ctgcgtcttc agttccttca tttggatcta ctgaatatat aacttggtat
      661 ttgcctgctt tgttcagatt tacttttcct tgcactttta cttgtgaaaa tggaatattt
      721 tttccatcac gtctagttgc ttgaataaag ctatctttcg cgttccattt ctcgcctact
      781 tttatgacac gatctttcac catcaaaata gaatggtttt tcaaaacagt gaccttagca
      841 acagctttca caccatcgta tacatagcta atttcatatg ttcccggtgt tttgctatca
      901 actttacctg cgacagtaat atctttgaat gctacttttt cacctgcttt attcgttgca
      961 tagtcaaaat tatctttcgc attccaacta tttccagcat aaaaactact atcatgaatt
     1021 tttacagtcg tttttcttgg tttcacggtt acattaatcg tggcagaaat accgtcataa
     1081 ctgtaggtaa cttcatagac gcctggcttt gttacatcca cggcaggatt ttctttgaca
     1141 gtaatatctt tccatttcac tttttgacca gctttatcga gcgtattgtc ccaattatct
     1201 tgagctttcc aattatctcc aacataaatc actgaatcat gggctcgcac agctgttttg
     1261 ggatgtttaa caattacttg aatggttttg gtaattccag cataaacata tgtgatcggg
     1321 tatgttcctg cttgacttgt atcaacagtt cccaagactt gtacgtcatt aaaggatact
     1381 atatttccat ccttatccct agcgctatca aaattatctt ttgctgacca attatcatca
     1441 atatacagaa tagaatcatg tgcattaata gctgttttga tttctttcac agttaaagta
     1501 acagtagtcg aggcaccatc ataattatag gtgatttgat atctgcctgc tttgttgaca
     1561 tctactttag gctcttcttt cacttttata tcagcaaaag aaactggctt cccgtcttta
     1621 tcaactgcat tatcaaaatt atccgccgct gtccatgctt ctcctacata gattgacgag
     1681 tcatgcccat taattccttt tttattttct tttacagtaa cagtaattga acttacagta
     1741 tcttcatact tatacgtaat cgtatatacg cctgctaggt ttgtgtttac tgttccaata
     1801 accgtcaaat cttttagact caaggcattg ccatctttat caagtccact gtcaaaatta
     1861 tcacctgctc gccaagtgtc gccagtataa attgtcgagt cgtgtgcatt aatttctgtc
     1921 aaattttctt taacttcaat tttagctttt ttagacactc ctttgtacgt atatgtgact
     1981 gaatagattc ctgctgtatt agtatcaaca gatccttcta cttggatgtc tccaaatgga
     2041 actgtttcac ctactttgtt tagcgcacta tcaaagttat cagttgccgt ccatgtatca
     2101 cccaaataca aaatagaatc atgtacattg acagttgtta aatctttttc aactttcact
     2161 tgaataacta cttccgctgt tttcccattt ttagcaactt gataggtcaa cgggtaagtt
     2221 ccgccttggt tagagccttc ttggatagct tttaattgct tggcatccac ttttacggaa
     2281 ctagtacaat cttgtgcagt agaaagtaca cctgtcttca cttcttcaaa actagctgtt
     2341 tttgctaaag taattgcttc cgtttcagtt agcttatttg aatctttgta ttctaaacta
     2401 aaattcattg cgccaaggat aagtccctct ttttggtcta tcgtagcact tggctcagtt
     2461 atatatacag gtgcagtaga ttttttctct gtatcaaaaa tatctttgat tgtaatacca
     2521 atatcagttg ttgcgattgc tttgtttccg gcagaaatac caacaattat tccagaacca
     2581 tcattagcag tttgtgtagt tgctaaagtc gtatcattgc tagtccattt gtaaccatct
     2641 gtaatcgctt gaatattgtg aaagaacgac ggctcaatcg tatcttctac cgcttctcca
     2701 ctagttgctc ttactttcgg caatgttact tttaaacttt taccagcttg tacgattttg
     2761 gcgctaagat taactttaag atcattatcc ggcgcgtatt ccatgtaacc agcattaatg
     2821 ttttgtgata ccggttgagc tggatcaatt tcttttaccc aacctttgtc tgtaccctta
     2881 ttggatacag tactatttat cgtattatct tgccccactt gtttcaaagt aaactgattt
     2941 ccagctcttt ctggaaactt cactgcatat ttcccgtaag ataaattcaa attgtaatta
     3001 aaggtgtatt ttccatcagc attagtttta acgctgactg gctcaccatt tttcaagaac
     3061 ggctcatagt tagaggtatt ttcattccat ttataaagtt caacagtttc gtttgcgagt
     3121 gctgtatctc cttgagcttt ttcatacaaa ccatttgcat ctttatcttg gaaaagaaaa
     3181 ccgcttgctt ctaaaataat taattctgct ccaactttag ttcctggtaa tgttccagaa
     3241 taagcattcg tagttacacg atagtaaggg ttatatacat cgcgttcact tattttattt
     3301 ccctctgtag cagaattaaa agtttcatct acttttagtg gaactttgat tgtttgtgtt
     3361 tcaccgggat caatctttgt cttcactttg atacgaacca tgttgacttt cccataatca
     3421 gagggaacag cgctatagac actttctgat tcatagttat ttttatttgc ttctgttgca
     3481 taactaatat caaattgtgc tttttgttca tctgttaatt gcacagcatc atttagtttc
     3541 atatcccact taaatgtctc cgtttggaat ttagaaccaa aattttgtcc ggtctttgga
     3601 attggaatat agagttcaaa agcacttgct ataccagtag atgtatttgt aacacggact
     3661 gtataatccg cttccgttcc tggtgtaaaa taggaaactg tactatcgtc accttctaca
     3721 taagatgctt ttgctccttc tccagccaaa tttaagaatg tttctactgt gactgcatct
     3781 tgctttggaa cacttaaagt actgctattc gcagaaagca gacgttcatt ttctattcca
     3841 ttttgattga catcaagacc tgtatccatg aaagtattcg cagctgtagc agcctttaca
     3901 tttgggcctc cccaagcaag aagttgttgg atgtcagtat gaagactttt atctaatgtt
     3961 acatcaatcg tagtatcata acttaaattt aaaaatttat gtttagaagg ataaccaaca
     4021 tacctaccaa ctgttgcatc ttttgttttt aaaacataca ctttctctcc attcttggcg
     4081 gtttctattt taatagagaa ctcgatctct tctccatctt gatccgttaa cttaatagaa
     4141 gacggaagaa ttttagtacc atccaattga cgaagataca cttcaggatc attaaggact
     4201 gtacgtgtcc cgtatggata gttaaataat accaatgtag cttttgtagt aaatttatct
     4261 ccagctccag cagttttgat tacttgtcct tgttcattat aaaaattagc tgttccgttc
     4321 gccgctgtcg taatattatc ggcaacacta taaacagaag tacccgagac tttcgtattt
     4381 acttcatctg cctcatccca aatggatact ttaaattgaa cagaagaaat gcctggtttg
     4441 acaataccat aggagtttgt tgattcctca ccaaaaccac cagattctga gtagcttgta
     4501 tatcctgtag aaaaatcgcc tacattcgct ttcacctcag taaagtattc tcctggttga
     4561 agtccgactg catcagcttc taagatagca atatttttca tactattctt aggaagattc
     4621 ccattgtatg tttgataagt atcatcaaaa ttagttttgt attgaatatt agtgatatca
     4681 ttatcttttc tattcccatc aaatgggatg ttaacaattg aagcttccca gtttgaatca
     4741 aattcaattt ggaagacttg attagttttt gtcccggcag tatctttatt attaattcga
     4801 acattccctg cccaagtttc attatctgga ttaatatttt tgtttcccac gattagtgcc
     4861 attttatttt cggtcgaatc tacaactcgg caagcatcta acgttgcctt agttgttaaa
     4921 tctgtagaat tgtttgttaa tgcatcagat tcaaatactt tatcgtcata tgtcgtgatg
     4981 actgcatgtg gcactttagg agcggtatat gttcctgctg gcgttccttt tggtatttta
     5041 tattttatcg catataccgt atctgttact cctttaaagt tctgttgttt aaaatcgaac
     5101 accactttat tctcttccgg ataatgagta atcgtagtat tagcattctc atttaaaagt
     5161 gcatattttt catttactac cccgacatat tccatacctt ctggataata aagggtagtc
     5221 gagacattct taggtgaaaa gatattagtt cctctttcat ctacttgatt cattccattt
     5281 acaacagagt aactttttgt atatgcataa gaatcttcat catctgtact cgctaataca
     5341 tcaggtgttc taaaagattt ataccaattt ctgaacatag tacttacatg tgtttgatta
     5401 gcataaccaa ccactttatt tccttctgca cgaattgctt tttcttctga agcaatcgcc
     5461 attttattat ctcccacaaa agcttctact ttaatagggg cttttagatc agttgcacca
     5521 tagtatttat tagcatctac acgaacagaa aagttaaaac ttactttttc tgttcctgga
     5581 gtaagtttat aattaactgt cccgaaagta gctttatcgt aggttgtttc tttgtttgga
     5641 atagtaacgg atgttattgc agtaccaatc gggtcccccg cacttaaacg atttatcacc
     5701 ccagagtcca cacctgttga tacttgaaaa ctgctgggaa cgggaattga tacaaatctc
     5761 ataccgtctg gcagtgtgaa ttccacctct ttactagtag atgtactatt actaaagtct
     5821 actgtaacat taacatcttt gatatcgcca tttgcccaag cagtaccatc ataagcagga
     5881 atatttaatg tgacagtagc atcattacct gattttagtt gattattctt tagaggtgct
     5941 tttgtttcat tttgtttaac tgaatctttt gattggttag cttcttcttt ttcaattatt
     6001 aaatttttta cttcatagga agctttaaat gttttaatct ctgtttcttt tccttctatg
     6061 ttttctttat agctaataat aaaattaaca tcaccatttt tttcagccgt gtactcggct
     6121 tcttttccct caattttatt accgtctggt gtttcaatac ttagaatttc aacttgatta
     6181 ttattagatg ttgctttaat tttaagcttt gctttctttt tatcttttga aagctcttct
     6241 tgaacttcat aagaaagtgg ttcttcgcct ttttcttctg caaatgcttg aaaaaccgtt
     6301 aaatttagtt gacttactac tagtaaactt gttattagca tcatcaagga acgacgtatg
     6361 tacaacgatt ttatcatatt agttttcctc cttctcatat tctggttgtt tttattaaca
     6421 aatctccaag agataattta atattatcag acgattttat cgagtgtaca tagtcgcaaa
     6481 acaccttatt aaaaaaaaca gcactattcg caaattcata caaatatttg tcacatcaaa
     6541 agcacgtttc agacacattt aagacacaat taattcgcaa aagctgccat tttagaagaa
     6601 aaataaaaaa ccactcttta ttatagagtg gttttggata aattaatggc taacttcttg
     6661 ttgctttttt tcaaatttgc gccgttcttt tacagtttgg tttttagcaa tccatttttt
     6721 tagtctagag tatagtaaca agaatacagc actaacaatg actcctttta ataaactgaa
     6781 tggtataatc gcatatgtga ctaaccaagc aacatctgta tccgccggaa gtccaccaag
     6841 tttaatgtaa aatggtaata aaatgaaata attaaatatc gacatgacga ctgtcattac
     6901 taacgttcca attgctgttg aaaacaccat tccttttgtt gaacgaaacc agtgaaataa
     6961 ataataaatc ggtaatacat aaacaatacc attaataaaa ttggatattt ctccaatcgg
     7021 aactccaact ggactacctg acacaatata aagtagcaca tttttgatta gttctactaa
     7081 aatcactgcg agtggtccga ataataagcc accaatcaaa gctggaatat cactaaagtc
     7141 aagctttaaa aatggtgcac tcggtagtag cggaaattgt agcatcatta aaataaatgc
     7201 taaagtacca agaaccgcca cacttacaaa aaccttcatt gaataattct tcattgtcat
     7261 ttctcccttg atgttcacca agaagcgagt gacatcacta gacgaatgca acccaagcaa
     7321 ataaaaaacc tcaactgaaa agagttgagg gagagtttgt gaatgaataa acaagaaccg
     7381 gatactcaaa taagcatcac agcttgctaa cacatgctcg tgaagacaaa cgaaaaggtc
     7441 tgccaacatc ttctcccatc cagactatac tgtcggtcct ggaattacac cagagtcaac
     7501 tgctaaaaaa gcagatcgtg gactttaacc accggtcggg aattgcaccc tgccccgaag
     7561 atgaacgaat attttattac aattttcatt ttaccatgaa aaaaattttt ggcaagcact
     7621 tttgtatatt ttttcacgta agcgctttct atctaaatta aataaaaact agctgcttag
     7681 ctagttttta ttaattcacc atggaatatc tgttgataat gattccgcta atgattggtt
     7741 ttcttttaaa cgaattttac gagcaatgct tcttgcctca gcacccgcgt ggattctttt
     7801 ttgttcttct gtttctggtt taacgagtgg cacttctaca gttttaccat ctgcatccaa
     7861 cgctacaaat gttaaaaagg atgtcgccgc taagtaacgt tctcctgttt tcaaattctc
     7921 cgcaataatt ttaacgaaga tttccattga acttctgccc gttgaagcta cataagactc
     7981 taagcaaaca gagtgatcat ttttaatcgg ttttaagaaa tccactgagt ctgtcgatgc
     8041 agtgacaatt tccgtacgac aatgacgaga ggcgctgata gaagccgtat catcaatata
     8101 agtcatcaat ctaccgccaa aaagggtatt atgattattc gtgtccgacg ggaaaacccg
     8161 gcttgtttta attactagtg attctttgca aaattttgtt tgtctttttt ccatgttttt
     8221 cgctccaatc tatttataga gaggcaaagt gataataaaa tcagatcctt tacctaattc
     8281 gctttcaacc gaaattttcc cattatgtgc ttctacaata ttcttaacga ttgcaagacc
     8341 aatacctgtt ccaactgctt ttccgcgttt ccttgcttta tccactttat aaaaacgctc
     8401 aaacagatat gggatgtctt cttccgcaat cccactaccg ttgtcagata ctgtgattac
     8461 aagattgctt ctagcttcat caatggtttg ttttaaaatt acttttccat catagccttc
     8521 ttttccagta tgacgaatag cgttcataat taaattaatt aatacttgct ccatccggtc
     8581 ggggtcatag gaatactcta aatcgggagt ttcaagctct aagccgagtt ccacataatt
     8641 ctctttcgca agaacgtcaa aattagaaat aacttttcgc agcaatggag cgagcggtaa
     8701 tttttgatta tccatttgat taaaaccagc ttccattcta gcaaggtcta gcatatcatt
     8761 aaccaaacgc ccaatacgaa gggattcatc gtaaataatt tgtgcaaact cccgcacttc
     8821 ttcatccgac tgagcaaccc cgtcaataat cgcttcacta taaccttgta acatcgaaat
     8881 cggcgttcta agttcatgcg aaacattatt aacaaaatcg cttttcattt tttcaagttg
     8941 tttctcttcg gtcatatcgc gaataaccgc aacgacacta cgcacatgtt cccctgtata
     9001 caaaagtgtt aaaatggcaa catacgtatg gtcagcaaac gtaatttctc cgacttgaga
     9061 ttctttcttt tctaacgtat cattcaataa ttcatttaaa gccactggaa tgagcacttt
     9121 ttcggtattt tcaggtgaga agaaccaatt atgtaaaaat tcttctgccg gcggattact
     9181 aagaatgatc gttttatcca cactaaattt aataacacca tcagccatcc caactaaaat
     9241 attggatagc tgttcctttt cttgcctaag ggcgctaaca ttatacttca attgctttgc
     9301 catatcgtta aaagctactc cgagttcacc aatttcatca tgcgtataag ttggtacgcg
     9361 attatcaaag ttcccttttg aaacagcaat cgcaattttt ttcatttcac gaagcggaaa
     9421 agccatgcga gaagaaaaga cgaaagacaa gatagacgta ataactatcg caataatacc
     9481 cgaaataatc aaagtactca tcgttttttc gttcactttt agaatatcat ggtaagactg
     9541 ataaacgtaa acaacaccag tttcaccgtt cgctagtttg aatttctgtg cagaaatttc
     9601 aaccggtaag gagctttttt ctgttttaaa attatatttc atcgttacac tattatcttt
     9661 ttctaaagct ttatctaatg tcttatcttg aattaattta ttagcagatg cactagaaat
     9721 ggtatctggt gactgtgatt gatagacgct ttttccattt tgttcgataa tgacgcccat
     9781 cgtatcatca agtagtatca gcgcagaatc attattattt tcagcagaga ttacttcatt
     9841 attttcttgc attacagtga tgatactagc tgttttgtct tctaattcat ttgttatttg
     9901 agtaatgtta tttttttcat aaatcattgc aactaaaaat ccagaaataa ctaaaatccc
     9961 tatcagtaag agaataatgg tactccaaat tttcccaaca atactattcc aaatcttcat
    10021 ctattctcac ctcggtcctc gcaaaaaaat aacgaacaaa gcacgtgcgg cataacactt
    10081 gccgattaaa cgtctttgcc cgttatctta gtctggttta ttaatcttct ggaacttcaa
    10141 atttatatcc aagaccccaa actgttacaa tcattctagc agcgtcttct gatacatcat
    10201 gcaatttttc gcgaagtctt ttaacgtgtg tatcaattgt tcgcaaatcg ccaaagaatt
    10261 cataacgcca tacttctttt aaaagagact cgcggtcgaa tactttatcc ggagatctcg
    10321 ctaaataata aagcaagtca tattctttcg gtgtcaaacc gatttctttt ccgtcgacaa
    10381 taacacggtg agcttcgtta tcaattttca aatgtgggaa ggtaataatg tctcccggtg
    10441 ttcctcctgc tgattcttct gaggattgtt tggcgcgacg aagaacagct ttcacgcgaa
    10501 gcacaacttc tcttgggcta aatggtttta cgatgtaatc atctgcacca acttcaaagc
    10561 cttgtactcg gttagcttcc tctccttttg cagtcaacat gacaacaggt gtggatttaa
    10621 actctctcag ttcacgacaa acttcgatgc catctttacc aggcatcatt aaatcaagta
    10681 ggattacttc ataattattg ttcagcgcca tgcttaatgc ttgatcacca tcactagctt
    10741 cttcaatacg atagttttct ctttcaagat acatcttaag aaggcgtcgt atccggtcct
    10801 catcatccac aacaagcact ctaacttgtt cactcataag tactcatccc ctaactctca
    10861 tttacataaa acgatcattt acattcaatc agataaatgg aatcttccgt acccacatac
    10921 gaaaaaacca tacaattgcc tataccaaat ttcctacgat ttaaattata catgtttttc
    10981 acaaaacacg ctattagaaa gtatattttg tatgaaaagt tactttttat ttttaccaaa
    11041 tcttgcttct gtttttaatt gttttacttc atgatgtgat aattctctac gctcacctgc
    11101 gtttaaaccg cgtaaattca agaacgagta ttcttccctt gataattttt gcacttcaaa
    11161 accaacagcc tcaaacattt tacggacttg acgatttcta ccttcatgaa tcgtgatttc
    11221 tacaatagct ttatctttcg ttttatcaga agaacgtact tttacttttg ctggggctgt
    11281 tttgcgacca tcaatcacca caccacgttc taactgacga atcacttcac gttcaggaat
    11341 acctttgatt cgtgcgatat atgttttgga aacttcattt ttcggatgca ttagtaagtt
    11401 agcgaaatcc ccatcattgg tcattaataa taaaccagat gtatcataat caagtcgccc
    11461 tactgggtat aatctttcag gaatatctgc aaaataatcc gctacagttg tacgaccttt
    11521 atcatctgtt acagccgaaa ccgttcctct tggcttataa aaaaggaaat agcgatgttc
    11581 ttcttttgtt agttgaattc cctcaacttc aattcgctcc gtaccactaa ctttcacacc
    11641 taattctgtg actactttcc cgttcactgt tactttacct tcttgaataa gcttttctgc
    11701 ttttcttctt gaagtaatac ctgcatttgc aatcactttt tgtaaacgtt ccattcttat
    11761 tcctcctcct gttctttact ttggttaaac cggtcaaaaa acaggtccat ttcattctga
    11821 tctggttcat ctgtcgctgg atcagcaagt tttggtaaat cctctagaga attaagtcca
    11881 aaagcatcta aaaactcact tgtagtaacg taaagttttg ctcgtccagc tccgtcgaca
    11941 cgacctttat ccgttacaag tcctttggct actaaagttc gaatcggtcc atctgtttga
    12001 acgccgcgaa cctcgtctac ttccattctt gtaactggtt ggcggtaagc aataattgct
    12061 aatgtctcta atgatgcttg cgataaaacg gtgttgcttg gaacttcgac taatttacgt
    12121 aaaaattctg catgcgcttt tttcgtagct aattgaaatg ttccagcaag ctccaaaaga
    12181 attaaacctc tgtcagcact tccgttgtat cgatcactta aaagttctag taaattgagt
    12241 gcttcaatgt gcgtaatttc catgacttca gttaattgtt ccgttgaaag ccccgcatct
    12301 cccgccgcaa aaagcaaact ctctaatacg cctaattgtt cttctctgtt cacgatattt
    12361 cttccccttt accttgcaca tataaatccg caaaactttc cgcttgttct acttcgacca
    12421 attttcgctt cattaattct aacaaagcca aaaacgtaac gacaagttgc tctttcgttt
    12481 gttcttcaaa taactcgtca aatcgcaagc gatgattgac ttgtaaattt aatttttcta
    12541 aaacagaatc cattctttga tcaatggaga tttcttgtgt tgtaattctt gtatggagag
    12601 gtttatttaa ctttttccga cgtagcattt tgttaaaagc acttagcata tcgtttaatg
    12661 atacgtccag ttctgccacc ttagtaccat catcatattc tgctaaatcc attggaggtt
    12721 tactgaaata aaagctccgt tccgcctctt tttcttttaa ttcttttgcg gcttctttga
    12781 atcgtttgta ttccattagt ttttcgacta aagcatcacg aggatcctct tcctcttcta
    12841 gtgtatcata atcgatttcc agttcttgct ttggaagtag catcttactt ttaattgcta
    12901 gtaaagttgc tgccatcact aaatattcac tcgcgacatc taattccatt tcttgcattg
    12961 tatgaacaaa ttccatgtat tggtccgtaa tttcagccat agggatgtca taaatatcga
    13021 cttctagttg tccaattaaa tgaagaagta agtcaagcgg tccttcaaac gcgtccactt
    13081 taaaattcat ttctaccata tctgtcccgc cctactataa tgaaagatca ttttgcacta
    13141 aattttcata tgtttcgcgg gcaacgatta atttatcgac tccgttttcc acaaaaacaa
    13201 ctgatggtct tgggatacgg ttataattac ttgccatcgc ataaccatag gctccagtac
    13261 aaaataccgc caaaacttca ccggcgtttg atttcggtag tggtaagtcc catattaaca
    13321 tatcaccaga ctcacagcat tttcctgcga tagccactgt ttcttctgcg actttctctg
    13381 ggtttgccgc aagaacagca tcgtaatgcg catcatataa cgctggacgg atattatcag
    13441 acatgccgcc gtcaactgcg atataattcc gaattcccgg aacttcttta cgcgatccaa
    13501 ctttataaag tgttgtacct gcttcaccaa caagggaacg acctggctca atccaaattt
    13561 ctggaatatc aatatcgtta ttattagcca catcccgcac ttcatccata atttggcgca
    13621 catattcgct aggttcaaga ggttcatctt ctgccgtata acggacaccg aaaccgccac
    13681 caagattaag tactttggaa tcaaatccca gagtttggtg ccattcaact aatttatcca
    13741 taatacgacg agccgctaat ttaaaacccg ttgtttcaaa aatttgcgac ccaatatgac
    13801 agtgtaggcc aattaaatca aaggacgcac ttgcatgaag cacttgttta atcgcttttt
    13861 cagcttgtcc atttgtaagt ccaaatccaa atttcgaatc atcttggcct gttaaaatat
    13921 agtcatgtgt atgagcttct atccccggtg tcacgcgaat taaaaccgat gccttttcat
    13981 ttcgttctat taatatatct tctaataaac taatttcata ataattatcg ataacaaaac
    14041 aaccgatgcc atagtcaagc gccatatgta tttcttctgc acttttatta tttccgtgaa
    14101 aatgaattct ctcaggagga aaatttgctt taattgctgt ataaagttct ccgcctgaaa
    14161 caacatctag tgataaacct tcttcggcca tcagctgata aatcgctact gcagaaaatg
    14221 ctttgctcgc ataagccact tgtgctttta cgcctagctc ttcgaatgtt ttcttaaatc
    14281 ctcttgctcg gtcacggatt agcgctacat cataaacgta cagtggcgta ccatattttt
    14341 cagtaagctt taaagtgtcc acccctccaa tttcgagatg tccttctgca tttacattca
    14401 ttgttccaag ccgttcaaac gtcacgccaa tcccaccttt acattataga tttttaaaag
    14461 ttcttttata tagtagcaca ctaagaagcc gagcgacaat aactatctga aaatattatc
    14521 aaatacgtaa aaaactcagc ccaaatctat tatctccttg cttcagaaaa taacaaattt
    14581 ggactgagat tagctaccaa ttattttaag aaattttagc aacaatggct tttacatatt
    14641 gtaaaaacgt gctgcgaact tgatctgttg tttcaataac ttccgtatga gaaagtggtt
    14701 gatccagaat tccggctgcc atattggtaa tacaagaaat acctagcact cgtaatccag
    14761 cgtggttcgc aatgattact tccggtacag tggacatccc aactgcatct gcaccaagtg
    14821 tgcgcatcat ttgaatttca gcaggtgttt cataagttgg accgctaaat ccagcataaa
    14881 caccttcacg gatagtcaaa ttaagttctt gagcaataag tctagcatcc acacgtagag
    14941 ctaaattata cgcctcggac atatctggga aacgcggtcc aaaatgctca tcatttggtc
    15001 caataagcgg gttcgttcca gtaaagttaa tgtgatcaga aatcaacatt aagtctccag
    15061 cagaatataa ttcatttacg ccacctgccg cattcgtcac aacaagcact tctacaccaa
    15121 gctctttcat cacacgaact gggaaagtaa catcttgcat tgaatagcct tcataaaagt
    15181 ggaaacgtcc ttgcattgca acaacttctt tattttccaa ctcaccaaaa acaaattggc
    15241 cagcatgtcc ttctactgtc gaaacaggaa aatgtgggat ttcgctataa gaaagttttg
    15301 tcggattgtt tacttcatcc gcaagcacac ctaaacctga accaagaatc aaaccaattt
    15361 ttggtgtacc attgtaactt tctctaattt tcgcaactgc ttcatttact ttttctaaac
    15421 tcatttttgt tcctcccttt tcctatttca agtcttttaa gaaacttgtt ccatattcag
    15481 gcattttcac ttcaaaatta tccgcaactg ttgcgccgag atcggcaaat gttttgcgta
    15541 attctaattc tgaaccacca tttttgaagc gtggtgagta tacaagtaat ggtacaaact
    15601 cacgtgtgtg gtctgtgcca gagtatgttg ggtcatttcc gtgatcagct gtaataatta
    15661 atagatcatc atctgttaat ttttccatta cttctactaa acgaccgtca aaatcaacga
    15721 gcgcatctgc ataaccttgt ggatcacgac gatgtccgaa aagtgcatca aagtctacta
    15781 aattcaagaa actcataccg ttaaaatctt tatctaacac agcgataaat tgatccattc
    15841 cgtccatatt tgatttcgta cggatagatt ccgtaacacc ttcaccatca aaaatatcag
    15901 aaattttacc aatggcaatc acgtctttac cgccatcttt taaagcatcc attacagttg
    15961 gtttaaatgg ttttagcgca tagtcatggc gatttggcgt tctaacaaac gcacctggtt
    16021 cgccgacaaa tggacgagcg ataatacgac caagcatgta cgggtcatct agtgtaattt
    16081 tacggcagaa ttcacagatt tcatataatt cttccaaagg tacgacatct tcatgtgctg
    16141 caatttgtaa aactgagtca gctgatgtgt aaacaataag cgcacctgtt ttcacatgct
    16201 cttctccaag ttcagccata atttctgttc cgctcgctgg tttatttcca attactttac
    16261 gtcctgtttt ttcttcaatt tggttgatta aatcatccgg aaatccatct gggaatacgc
    16321 ggaaaggcgt gtcaatgtat aggcccatga tttcccagtg acccgtcatt gtatctttac
    16381 cgttcgaagc ttcttgcatt tttgtatagt aagcaagtgg tttttctgct tttttaattc
    16441 cgtctatttc tcgaatattc gatagaccta atttgcccat ttcaggcatt tttagtccgc
    16501 cgacgtgttt ggcaatatgt ccaaatgtat ctacatcaaa atcaccaaat ttagcagcat
    16561 ctggtgcttc tccaatacca actgaatcca ttacaactac atgtactcgt ttaaatttat
    16621 ctggcatatt tactcatcct tttcaactat attttttaag cgcgcgggtg gaattgtttg
    16681 tagacatctt tcaaccgcag ctttgttacg tgtgtataaa tttgtgtagt ggagatatcg
    16741 gcgtgaccaa ggagttcttg aaccgacctt aaatcagccc cattttcaag taaatgagtg
    16801 gcaaatgaat gacgcaaggt gtgcggtgta atcggctttt caatgcctga ttctttcgca
    16861 atacctttta aaattttcca gaaaccttgt cttgtgagtc cttggccgtg atgatttaaa
    16921 aacacaaaat catttcggta tttcggtcta cgaagttttg gtctcgcttc ctctaaatac
    16981 ttctctaaca cagttgttgc cgtttttcca agcgggataa ttctttcttt atctccttta
    17041 ccaatcgttt gaataaaacc catatgaaga tgtaaatcgt ccattttcag gctgacaagt
    17101 tccgttacac gaagccctgt cgcatataaa atttccatca ttgcttggtc ccttaatcca
    17161 agtggtgtac tcgtatcaga ggaactaagt aacttctcga catcatcaag gttcaaaact
    17221 tttggtaatc cctgggcttg tttcggcgtt tcaatttgaa tcattgggtc atgtgacatt
    17281 ttcccatcgt gcattaaata atgaaagaaa gatcgcagtg aagcaatata gcgcgccaca
    17341 cttcttgctg atttcccttc ttgtcttgca aatgccataa aaccaactat atcgcttcgt
    17401 tcaagtgtat tcggatctgt taatcccttc gctacatcca tataagaaac aaaatagcgt
    17461 aaatctcgtt cataagcttt gattgtattc gcggataaac ctctctctac aattaaaaaa
    17521 tgtaaaaaat cttctattaa atcattcata agcgtttcct ccacaaatcc tattctacca
    17581 tgttacactc ccactgaaaa cgtttaatta atagaaaaag acttataata cttttcgcgc
    17641 aattcagtcc atctttttta atcataaaaa aaagtttgag ataaattatc ccaaactctt
    17701 gtattattct tttttagatt tttgtctgca atctgtgcaa atcccttgga aagtcagacg
    17761 atggtcttta acaagaaaat tccacttcga ttcgacgatt ttctccacat cttctaataa
    17821 atcttcttga atttcttcta cagaaccaca ctctaaacat actaaatgat gatggaaatg
    17881 tttggcgcct tcttgtctca agtcataccg agaaacaccg tcaccaaaat taattttatc
    17941 aaccacgcgt aattcggtta aaagttccaa cgttctataa acggttgcaa ggccagtgtc
    18001 aggtgcaata tctttcacac gcaagaaaac ttcctcggca cttaaatgat ctttttcatt
    18061 ttccagtaaa acgcgaacag tagcttctcg ctgtggggtt aatttataac tagcatcatg
    18121 aagttgtgct ttaatgcgtc caatacgacc ttccattatg gttcctccct tggttgctac
    18181 aacaagttgt ctttctaaat tatcatcatt atcatttaac aataaataca gtttataata
    18241 attataaata aaatgcaagt taggaattca ctttttttag taaaaatggc acgtagtcaa
    18301 ttccta
//
LOCUS       DASDXX010000037        17764 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.037, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000037 DASDXX010000000
VERSION     DASDXX010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17764
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.037"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(14..1567)
                     /gene="cshA"
                     /locus_tag="U0280_001011"
     CDS             complement(14..1567)
                     /gene="cshA"
                     /locus_tag="U0280_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase CshA"
                     /protein_id="HEM2270965.1"
                     /translation="MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIG
                     QAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVL
                     AVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMG
                     FIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQF
                     FVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQ
                     AKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA
                     GKEGMAITFVQPREMGYLRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITE
                     ENLADYKTFANELLEKYDATDIAAAMLKMLAKEPDKTPVHITEERPLPSRGGGGYKGK
                     NGKGGKGGGYRGGSGKGGSYRDRNNSGKGRRSGGGSGSGGGGNRDRRSGGGEQRSGGN
                     KGNYSQKSK"
     gene            complement(2029..3702)
                     /locus_tag="U0280_001012"
     CDS             complement(2029..3702)
                     /locus_tag="U0280_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM2270966.1"
                     /translation="MTWQQHLNAWQNADLSDEWRRELQRVEQEQERFDGYLTFGTGGM
                     RGKMGVGTKRINLFTIRRVAKGLGDYVVANGGAEMGVAIAYDSRHHSGAFAQDTAKVL
                     AAQGVKVYLSDTIRPTPALSFCVREKGAFAGVVITASHNPSIYNGFKVYDKNGCQITL
                     GVAQEIAGYLENTTDIFTIPVRELPNPLVMTLGKEMDDAYLKALTAVVSRPDLLADYG
                     NELQICYTPLHGAGKELVMRGLLENGFSETTMIAEQSEPDGDFPTVVSPNPEEENSFE
                     LAKKQAKEIQADIILATDPDADRLGVAVLNKQATYQILTGNQLGALLLQYILEAKTSV
                     TQADTMINTIVTGDLGGRIAHDFGINHIQTLTGFKFIGEKIAEMEGTEKNFLFGYEES
                     YGYLIAPFVRDKDAVQAALLTAEMALFYKKEGTTLLQKLTNLYEKFGYHKEHLHTITL
                     DDSDGTTKMNQVIDDLRKEPTCIPGITVLEDFLTSKRTNLSTMEMTNIELPKENVLKF
                     YLNDNAWFAIRPSGTEPKCKIYFQTIGQTEEIATKAMDELKKCVLAKWD"
     gene            complement(3699..4766)
                     /locus_tag="U0280_001013"
     CDS             complement(3699..4766)
                     /locus_tag="U0280_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 130 protein"
                     /protein_id="HEM2270967.1"
                     /translation="MNIYRYEENPLITPLDVKPIHEGFEVIGAFNAGVAEYNGEVLLL
                     LRVAEKPVSEDPEVVLAPVYNAKSKELELQQFRLDDENYDFEDPRMIRSKAKLEGFSY
                     LTSLSYIRIARSKDGHQFTLDEKPFLYPFNEYQTFGIEDARVTQIGDTYHVNFSAVSE
                     FGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGKYYALHRPSLKSIGNLDIW
                     IASSPDLRSFGDHRHLLGIRPGEYDSGRVGGGCVPIKTEEGWLILYHGATEENRYVMG
                     AALLDLNDPTIVLKRTKTPILEPVADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADT
                     SMAGCDMKISEILHQLEVENK"
     gene            complement(4788..5702)
                     /locus_tag="U0280_001014"
     CDS             complement(4788..5702)
                     /locus_tag="U0280_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1861 family protein"
                     /protein_id="HEM2270968.1"
                     /translation="MNTIENLLQVYRENSAAFGTRITLNGAGDKDVYNITAPFHWLGK
                     EYIAGRVESRDSEFSEVRFFEKIETDKYQLVENTTVLALQDPFVTFVQGELIIGGVEV
                     FPKETDPTMLDWRTNLYRATSLTDFEQILAGPIGMKDLRIKELADGRILVLTRPQGEK
                     GGRGKIGAIVIDSLAELTIEKIEAAPLLKRNFSGEEWGGGNELHLLEDERIGVLGHIA
                     CFDEAGNRHYYACSFRLNEDFSQIEQEKIIAERANFAPSEPKRPDLADVVFSGGLIRN
                     SDGTATLYAGIGDSDAQKLAIPDPFKNN"
     gene            complement(5704..7236)
                     /locus_tag="U0280_001015"
     CDS             complement(5704..7236)
                     /locus_tag="U0280_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucohydrolase"
                     /protein_id="HEM2270969.1"
                     /translation="MEFWRRSVFYEIYMKSFQDSNGDGLGDFKGLTSRLDYLVDLGID
                     GIWLTPFYPSPQVDNGYDVSDYCDINPDYGDMTDFRAFMKAADARGIKVIIDLVLNHS
                     STEHAWFKESRSSKTNPKRDYYIWREKPNNWESFFGGSAWEMDELTGEYYYHSFAKEQ
                     ADLNWANEAVRAEMEQVLAFWLNEGVAGFRLDVINNLTLVLEFTDNPVTSGEMEHVYD
                     RNQSGLEQALEDIASFCRKERDVFLVGEISSDQLAEIARYSSKKMLDVTFNFNFGSVD
                     QLDAKSVFTTLNEMETALNEGQWPTLFFGSHDMSRFRSRLASGDIVKTQLLAFLMLTA
                     KGVPFIYYGEEVGMPDLTFSSVKEMRDIQGTAAYYQALQTGSDEKQALEIAIEKTRDK
                     ARGPMIFPDGKPFTLGEPWIKMATLPEKEARTMWRFYQGLLAFRKENDFKEMEYTFLK
                     LDGEVLSYQRGEFIFLLHFGEEEVTYPLQGNYQLVFGEAVMVGNGIRMGAHTGIALRV
                     EE"
     gene            complement(7252..8085)
                     /locus_tag="U0280_001016"
     CDS             complement(7252..8085)
                     /locus_tag="U0280_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2270970.1"
                     /translation="MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDK
                     KLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTIIVSTIATGLMLLFGLMVGYALAK
                     VDFKGKKIVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
                     TNFFKAIPDTLIEAAKLDGASDLKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDML
                     VTKSDGTVTLNVLISQMFGPYATYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTL
                     K"
     gene            complement(8072..8950)
                     /locus_tag="U0280_001017"
     CDS             complement(8072..8950)
                     /locus_tag="U0280_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2270971.1"
                     /translation="MKRRNNKLGWSFTSPYLIFTAIFFLVPLVWSIWLSVTDWNMMSP
                     EINFVGFDNFIKAFTSPAVQAAFFVTYKFLIVFVPMALIISMIVAVLVNGLPKFKGLY
                     LVAFFLPYLSSGVVTSLIVQGLLSYNSALNVFLRGHFGWDIDWLGTPMSALVIISLMI
                     AWKMSGYYALILISGLASINHEIYEAAAMDGSGRFRTFWKVTVPMLYPALFTVIVLAV
                     SVSFGIFTEVYQLTGGGPNFATNTWQMEIFNQAFVNLNSGYASAISLMAATVTFASIG
                     VIKKMLEKWGQRNGWT"
     gene            complement(8947..10266)
                     /locus_tag="U0280_001018"
     CDS             complement(8947..10266)
                     /locus_tag="U0280_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2270972.1"
                     /translation="MKIRKIAIAALSVVVAGSLLTACGGGNSKSDDNGKTKVTFWAAP
                     NPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRS
                     FAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFSDGNQYVLPVYSNPILFAWR
                     LDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYD
                     AASKGNAFVEDGKLVADDKAGTELLTFMSELQKNKLLLASKATDPFETGTSIMADNGP
                     WTFPNWDEKFPELKYNENYAITAPLVPDNMANEENVATYADSKGVVMYAQATDKEKEA
                     AMDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVYAANVPYSI
                     PAMDDAKYNDIQQIIGEEAWNPIVRGEKKPAKAWSDMKKAEDGVLQE"
     gene            10510..11535
                     /locus_tag="U0280_001019"
     CDS             10510..11535
                     /locus_tag="U0280_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2270973.1"
                     /translation="MKKVTMQDIADRLNITKNSVSQALGNKNGVSEQTKLAVFKMADE
                     LGYKYKREIAREVVKEKFALLATSFALSQRSFFGEIIDNMKQSIIAHQAELIIFPVTD
                     EEASTNQLPEQLTSENWTGIFLLSHINTDYSKKVIDLGMPVVLIDHHDPHLKADAVIS
                     QNKDGAFMAVEFLIQNKHQKIGFLGDVTFSPSYEERLEGYKKALHYYHIPFNEKYAIT
                     RIKEEQTTLYRTLDELDELPTAWFCVNSGLGFILNTYLQSKGYNIPNDLSIICFDNTE
                     FTVLSNPQLTTMCTNLSYMGEKAVELMYNRIRKPDEGFVHLALATNLIARDSVGENKK
                     ADSASES"
     gene            complement(11547..12260)
                     /locus_tag="U0280_001020"
     CDS             complement(11547..12260)
                     /locus_tag="U0280_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEM2270974.1"
                     /translation="MVACLCIHGFTGSPSEVKPLADYLREHTDWDVLAPTLPGHDHLR
                     HLKNVTYKDWIVFVDSILSQMLKEDDEVYIIGFSMGGLLAGWLARHYPEVKKLVLLST
                     AVNAMEWPQLVENSKQVLTEAKEVTLKNSPMFKRYQKKVTETPWTSTLQFKKMVALAK
                     PVFEHIEIPTFIAQGSADQVVPAEKSVNFLMESIPGPKELFILEGSKHVICQDEQADK
                     LFAAVLTFLQKDVAVLNAQ"
     gene            complement(12327..13700)
                     /locus_tag="U0280_001021"
     CDS             complement(12327..13700)
                     /locus_tag="U0280_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEM2270975.1"
                     /translation="MKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVP
                     FVGNVRDGHEFVSQAREMGAVATFWQKDVPNPPMDFPVILVEDTLLALQELAAKYIQQ
                     VKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVA
                     VLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSG
                     ILIYPHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV
                     PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAY
                     NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIF
                     LYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDV
                     VENLIIK"
     gene            complement(13764..14876)
                     /locus_tag="U0280_001022"
     CDS             complement(13764..14876)
                     /locus_tag="U0280_001022"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEM2270976.1"
                     /translation="MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITN
                     EGEWIQGPLLSGKLDFVEQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVF
                     PLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAV
                     RLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKELADAMTEAFLYDR
                     RVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPT
                     EVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPL
                     LWQETGLPYGALIERLVDLAKERHAAKNALKYKLED"
     gene            complement(15026..15346)
                     /locus_tag="U0280_001023"
     CDS             complement(15026..15346)
                     /locus_tag="U0280_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEM2270977.1"
                     /translation="MDWIFLLVAGLCEMVFVVMLKLSDGFKKVGYAILTIIFMSASFF
                     LLSLALKTIPIGTGYAIWTGIGAVGSVTLGMIVFKERKSVGKLLFITMIIAGVVGLKL
                     TSGV"
     gene            complement(15349..15690)
                     /locus_tag="U0280_001024"
     CDS             complement(15349..15690)
                     /locus_tag="U0280_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEM2270978.1"
                     /translation="MAWFYLIMAGLSEIVWAFGLKESHGFTMLGWSLLTIAFLIVSFG
                     LFSISMKSIPIGTAYAVFTGIGAAGTAIIGMIFLSEGVSFWKIVSLIVLLTGIIGLKL
                     VDGNESEKEAK"
     gene            complement(15707..16261)
                     /locus_tag="U0280_001025"
     CDS             complement(15707..16261)
                     /locus_tag="U0280_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2270979.1"
                     /translation="MTKKLIKEVALTLFAEKGYDGTALSEIAKAVGIKTPSLYAHFAS
                     KEALFLEVYQDSIQMELTELGKVAERDDLVGEKKLQSIFFVATDFSSNPDEKKFFQRA
                     VFYPPKSLFQELKEETKTYEQLTNRILRETLEKIVSEEALVRWMHVFYALLDGLSVEH
                     GIYDETEFELRRKSAWAVLASLLK"
     gene            complement(16341..17099)
                     /locus_tag="U0280_001026"
     CDS             complement(16341..17099)
                     /locus_tag="U0280_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270980.1"
                     /translation="MKKEAVNQQSIYVHIDHVINNVATSGISFCDFLNGVGQPPENIL
                     LIKHNIEDASYNAHTAFHYLEPGDLANISKENFNPLCWIDFEDVELLNQLTPQEVAEM
                     LYLAHTGRHLRSPFYYKLQNNFVYLTREDGRYNKVYYRNLNHFYMLLSYVIARKTAEL
                     VNEKGIFSFGKKKYVAEPPVELLKKMADHFKDGACIALDDVVRTRTQIEVPIGHGLTE
                     EMTELEISSKIYYEEEVAKLVYDLKQNEWKYIEK"
     gene            complement(17319..17465)
                     /locus_tag="U0280_001027"
     CDS             complement(17319..17465)
                     /locus_tag="U0280_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270981.1"
                     /translation="MDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKAVSNKAMPNMT
                     LRLQ"
BASE COUNT         5253 a         3957 c         2912 g         5642 t
ORIGIN      
        1 ttgtctaata atcttattta gatttttgtg agtagttgcc tttgttgccg ccgctgcgtt
       61 gttctccgcc gccactacga cgatcacgat tgccaccacc gccagaaccg cttccgccgc
      121 cgctacgacg acctttgccg ctgttgttac gatcgcggta gcttccgcct ttgccgcttc
      181 cgccgcgata gccgccacct ttgccgcctt taccattttt acctttgtag ccaccgccac
      241 cacgggatgg taatggacgc tcttcagtaa tatggacagg agttttgtct ggctctttcg
      301 ctaacatttt aagcattgct gctgcgatgt cagttgcatc gtatttttca agaagttcgt
      361 tagcaaacgt tttgtagtca gctaagtttt cttctgtgat tgcttcttga attttttcag
      421 ttgctacgcg taattggcct gcaaatgctt cgtcccaagt aggagcttga agtggttgca
      481 tacgtttttt cgtagtttct tccacaatac gtaaataacc catttcacga ggttgtacga
      541 aagtaatcgc cataccttct ttaccagcac gaccagtacg accgatacgg tgaacatagc
      601 tttctggatc ttgtggaata tcatagttat atacatgtgt tacgccggaa atatcaagtc
      661 cacgagctgc tacgtctgtt gcaactagaa catcaatttt tccttcttta aatttgcgta
      721 gtacactcat acgttttgct tgcgtcaagt caccgtggat accttcagcc acgtaaccac
      781 gcatatcaag cgcgcgagat agttcgtcta cacgacgttt cgtacgaccg aaaacaatag
      841 ctagttccgg tgcttgaacg tctaataaac gagataatac gtcaaatttt tctttttcat
      901 gcacttttac gaagaattgt tcaattaata gtgcagtcat ttctttcgct ttaatgcgaa
      961 taagttctgg gctatgcatg aaacgttcac cgatacggcg aattggatca ggcattgttg
     1021 cagaaaatag taaagtttga cgttctgctg gtacttcttt tagaatagtt tcgatatcat
     1081 caatgaagcc catgtttagc atttcgtctg cttcatctag tacaagtgtt tccacgtggt
     1141 ctagtttcag tgtgcgacgg ttaatatgat ccaaaatacg tcctggcgta ccaactacga
     1201 tttgtgggtt tttcttaagt gaacggattt gacggctgat atcgctacca ccgtaaaccg
     1261 ctagcacacg tacatgtttg tcatagctaa gtttataaag ctcttcagaa acttggattg
     1321 caagttcacg tgttggagca ataattaaag cttgtacgtt gttactcttt tggtcaattt
     1381 tgtgaatcat tggaagacca aaagcggctg ttttaccagt acctgtttgt gcttgcccga
     1441 ttaagtcttt acctgctagt cctagtggaa ttgtcttttc ttggattggt gttgcttctt
     1501 caaaccccat ccgatttact gattttacaa ttttttcgtc cagtccgaac tccgaaaatt
     1561 ttgtcaatgt catttctcct ttacctgttt aaagtttggt aggagagcta cttttataat
     1621 tcatcacaat acgcttatta cgattgtttg tctgttcatt tgcagttgtt tttatgaaaa
     1681 ctgctatctt tcattttcat ttttctgcaa tagaaaagcc tgggcgcacc aagcaaaatg
     1741 attcacggca tcagaaaatt tctctgccat tatagcagtt ctaacgcatc aaataaaaaa
     1801 gccctcatta atcactaggc taaatataaa cctaataaac ttccatctat catcataaca
     1861 cactaacgat ttcttttcaa cgtcaaaagc ttatctttcc ttgctattat cgaataaaaa
     1921 aacttaattc tttttaaatg tacgcttatc cgggtttttc agcgattttt atagataaat
     1981 ctttaaaaaa aagctgaaaa tcgtccgaaa acaatttcca gctttttatt aatcccattt
     2041 ggctaaaacg cattttttca actcatccat agcttttgtc gctatttctt ctgtttgacc
     2101 gattgtttgg aaatagattt tgcatttcgg ttccgttcca gaaggacgta ttgcaaacca
     2161 ggcgttatcg tttaagtaaa attttaaaac attttctttt ggtagctcta tgtttgtcat
     2221 ttccatcgtt gaaagattgg ttcgcttact cgttagaaag tcttctaaaa ccgttatgcc
     2281 gggaatacaa gttggctctt tgcgcaaatc gtctatcact tgattcattt tagttgttcc
     2341 atcgctatca tctagcgtaa tcgtgtgcaa gtgttcttta tgatagccga acttttcata
     2401 taaatttgtt agtttttgaa gaagtgttgt tccttctttt ttatagaaaa gggccatttc
     2461 tgctgtaagt aatgctgcct gaacggcgtc cttgtcccga acaaatggcg cgattaaata
     2521 accgtaactt tcctcgtatc caaaaagaaa gtttttttcc gtgccttcca tttcggctat
     2581 tttttcaccg ataaatttga aacccgtgag cgtctggata tgattaattc caaagtcatg
     2641 cgcgattctt ccacctaagt ccccagtaac aattgtatta atcatcgtat ccgcctgagt
     2701 taccgacgtt ttggcttcta aaatatactg taaaagcaat gcgcctagct gattccctgt
     2761 taaaatttga tacgtagctt gcttgtttaa aacagctacc cccagcctat cagcatccgg
     2821 atctgtcgcc aaaataatat cggcttgtat ttctttcgcc tgctttttgg ctagttcaaa
     2881 actgttttct tcttctggat taggcgaaac cactgtcgga aaatccccgt caggctcact
     2941 ttgctcagca atcatggtcg tttccgaaaa tccattttcc aaaagcccac gcataacaag
     3001 ttcttttcca gctccatgaa gcggtgtgta gcaaatctgt agttcattac cgtagtcagc
     3061 aagcaaatca gggcgagaaa cgactgctgt taaagctttt aaataagcat cgtccatttc
     3121 ttttcctagc gtcataacga gtggattggg taattcgcgc actggtatgg taaagatatc
     3181 cgttgtgttt tctaaatagc cagcaatttc ctgcgctaca cccaatgtga tttgacagcc
     3241 atttttatca tatactttga aaccattata gatagaagga ttgtggcttg ctgtaatcac
     3301 aacgcccgca aatgccccct tttctcgaac gcaaaaagat agcgctggtg ttgggcgaat
     3361 cgtatcggat aaataaactt tgactccctg cgccgccagg acctttgccg tatcctgcgc
     3421 aaaagcaccc gaatgatgtc tcgagtcata cgcaatcgca acacccattt cggctcctcc
     3481 attcgcgaca acataatctc ccaaaccttt cgctactcgt ctaatggtaa aaagattgat
     3541 gcgcttcgtt ccaacgccca ttttaccgcg catcccgcca gtcccaaagg ttaaataacc
     3601 atcaaatcgt tcctgctcct gttccactcg ttgtaattca cggcgccact catctgataa
     3661 atcggcattt tgccaagcgt tcaaatgttg ttgccaagtc atttgttttc cacttctaac
     3721 tgatgtagaa tttcgctgat tttcatgtca cagcccgcca tagaagtatc cgccacgccg
     3781 taatacatat gcagcgtatc accttcttga atggccccac atgcgaaaac aacatcaccg
     3841 aaaaagccat ttttctcata atcggcaact ggctctaaaa taggcgtttt cgttcttttc
     3901 agtacaatcg ttgggtcgtt taaatcaaga agcgccgcgc ccatcacgta acgattctct
     3961 tcagttgctc cgtgatataa aattaaccaa ccttcttctg ttttaatcgg cacacatccg
     4021 ccgccaactc ggccactatc atattcacca ggacgaattc caagcaaatg acgatgatcg
     4081 ccaaaactgc gcaaatctgg agaagaagca atccaaatat ctaaattacc aatacttttc
     4141 aaacttggac gatgtaaggc ataatatttt ccgttaattt tttctgggaa aattagtaca
     4201 tctttatttt caggagcaaa gatatttcct tgatactcca aattttcaaa gtcttttgtg
     4261 gtcactaatg catccgctac gccaaactca gataccgcac taaaattcac gtgatatgta
     4321 tccccgattt gcgtcacacg agcatcttca atcccaaatg tctgatactc attaaacgga
     4381 tataaaaacg gtttttcatc taaggtaaac tgatgaccat ctttactacg agcaattcga
     4441 atatatgaaa gagaagttaa ataagaaaat ccttctagtt ttgctttact gcgaatcatt
     4501 cgcggatctt caaaatcata attttcatca tctaatcgga attgttgtaa ttctaattct
     4561 ttacttttcg cattataaac tggcgcaagg actacttctg gatcctcact gactggtttt
     4621 tctgccacac gaagaagtaa aagtacttcg ccgttatatt cggcaacacc agcgttaaaa
     4681 gcgccaatca cttcaaaacc ttcatggatt ggttttacgt ccaaaggtgt aattaatggg
     4741 ttttcttcat aacgataaat gttcatttct actcaaaact cctactatta gttattttta
     4801 aatggatcag gaattgctaa tttttgtgca tcagaatcgc caatccctgc ataaagtgtc
     4861 gcagtaccgt ccgaatttct gattaaccca ccgctaaata caacatccgc taaatcaggt
     4921 cttttcggct cactaggggc aaaattagca cgttcggcaa ttattttttc ttgctcaatt
     4981 tgcgaaaaat cttcattcaa tcgaaaagaa catgcgtaat aatgacgatt gcccgcttca
     5041 tcaaaacaag caatatgacc aagcacgcca attctctcat cttctaacaa atgaagctca
     5101 tttccgccac cccattcctc tcctgaaaaa ttccgtttca aaagtggtgc agcttctatt
     5161 ttctctattg ttaattctgc cagtgagtca atgacgattg cgccgatttt cccgcgaccg
     5221 cccttttcgc cttgaggtct tgttaatact aaaatacgtc catcagccaa ttctttgata
     5281 cgtaaatctt tcataccaat tggcccggca agaatttgtt caaaatcagt aagcgaggtt
     5341 gcccgatata aattagtacg ccaatctaac atagtcgggt ccgtttcttt cggaaaaact
     5401 tctaccccgc caataatcag ctcaccctga acaaatgtaa caaatggatc ttgtagcgct
     5461 aaaacagtcg tattttcaac caattgatat ttgtccgtct ctattttttc aaaaaagcgt
     5521 acttccgaaa actcgctatc acgcgactcc actcgacctg caatatattc tttcccaagc
     5581 caatgaaatg gtgccgtaat attgtataca tctttgtcgc cagcaccatt taacgtgata
     5641 cgtgtcccaa acgcagcact attttcccgg taaacttgca acaaattttc gattgtattc
     5701 attctattcc tccactctaa gcgcaattcc agtatgcgcg cccattctaa tgccatttcc
     5761 taccatcact gcttctccaa aaacaagctg atagttcccc tgaagcggat aagttacctc
     5821 ttcctcacca aaatgaagta aaaagataaa ttcacctcgc tgataactga gtacttctcc
     5881 atccaacttc aaaaaagtat attccatctc tttaaaatca ttttctttac gaaatgcgag
     5941 taatccttga taaaatcgcc acatcgttcg tgcttctttt tccggcaaag tcgccatttt
     6001 aatccatggt tcacctagag taaatggctt tccatctggg aaaatcatcg gcccacgtgc
     6061 tttgtcacgc gttttttcaa tagcgatttc gagtgcttgt ttttcatctg aaccagtttg
     6121 taaagcttga tagtacgcgg ctgtcccttg aatatcgcgc atctctttta cggaagaaaa
     6181 cgttaaatca ggcataccca cctcttctcc gtagtatata aacggcacgc ctttcgcagt
     6241 taacattaaa aatgcgagca actgggtctt tactatgtct ccagatgcga ggcgacttct
     6301 gaacctgctc atatcatgac ttccaaagaa aagcgtcggc cactgccctt catttaatgc
     6361 cgtttccatc tcattcaatg tcgtaaatac agattttgca tctagctgat caacactgcc
     6421 aaaattaaaa ttaaatgtga catctagcat ttttttcgag ctatatctag caatttcagc
     6481 taattggtcc gagctaattt cgcctactaa aaacacgtcg cgctcttttc gacaaaagga
     6541 agcgatatcc tctaacgctt gttctaagcc actctgatta cggtcataca catgctccat
     6601 ttcaccagat gtgactggat tatccgtaaa ttcaagtacg agcgttaaat tattgataac
     6661 atctaacctg aatcccgcca ctccctcatt caaccaaaac gctaaaactt gctccatttc
     6721 tgcgcgaaca gcttcattcg cccagtttaa gtcagcctgt tcttttgcaa aactatgata
     6781 gtaatactcg ccagtaagtt catccatttc ccaagcagaa ccaccaaaaa acgattccca
     6841 attatttggt ttttctcgcc aaatataata atctcgttta ggattcgtct tactactacg
     6901 cgactcctta aaccaagcat gctctgttga cgaatgattt aatactaagt cgataataac
     6961 ttttattcct cgagcatctg ccgctttcat aaacgctcga aaatcagtca tatcgccgta
     7021 atccgggtta atatcgcagt aatcagacac atcataacca ttatccactt gcggtgaagg
     7081 ataaaatgga gtcaaccaaa taccatcaat ccccaaatcc actagataat ctaatctgct
     7141 cgttaaacct ttaaaatcac ctaaaccatc gccattacta tcttgaaatg atttcatata
     7201 aatttcataa aacacactac gacgccaaaa ttccaagttc agtcgctcct tttatttcaa
     7261 agtaaattgc attccttctt ggaatttctt cgagaagaat aagaacaaga taataagtgg
     7321 aagtgttagt aacacagatg ccgcatacat tggcccagga taggttgcat atggtccaaa
     7381 catttgcgag attagcacat tcaatgtgac cgttccatca ctcttcgtta caagcatatc
     7441 ccaaagtaaa ttcgtccatc tgtctgtgaa aaggaataag aaaataacgg tcgtaattga
     7501 tttagacatt ggcagcacaa cccgaaacaa aatcttcaaa tcactcgccc cgtccagttt
     7561 ggcagcttca attaatgtat ctggaatcgc tttgaaaaag ttggtataca taaatacagc
     7621 ccataagcta agcatagtcg ggataatcat tcccgcatag gtatccaata aaccaaagtc
     7681 cgtaatcatt aaaaactgcg gaatcagcaa gatgattgcc ggaaaaaaca tttgaaataa
     7741 aatcgcatta ttaacaattt tcttgccctt aaaatccact tttgctagtg cgtagcctac
     7801 cattaggccg aaaagcaaca tcaagcctgt cgcaatggtg gaaacaataa ttgtattaat
     7861 aaacgcatga atccacggcg ccggtgccgc aacaactgaa ttaccaaata accaatccca
     7921 cgaacgagta gtgaattctg taggaatcaa ctttttatct acctgatccc aagcagcaaa
     7981 tgagtttaat actaaataaa taaaaggata aatcatgact agcataagta atgttgtcag
     8041 tatatagcga acaattttac ccgctttact attatgtcca accatttctt tgaccccatt
     8101 tctcaagcat tttcttaata acaccaatcg atgcaaatgt tacagtagca gccattagag
     8161 aaatcgctga agcataacca gaattcaagt taacgaatgc ttggttaaaa atttccattt
     8221 gccatgtatt tgttgcaaag ttcggtccac caccagtcaa ttggtaaact tcggtgaaaa
     8281 tcccaaaact aacgcttacc gctaaaacaa ttacggtaaa taaagctgga tatagcatcg
     8341 gaacagtgac tttccaaaat gttctaaatc taccagaacc atccattgct gcagcttcat
     8401 aaatttcatg attaatgcta gcaagtccag aaattaaaat gagcgcatag taaccagaca
     8461 ttttccaagc tatcattagt gaaataataa cgagcgccga cattggtgtc ccgagccaat
     8521 cgatatccca accaaaatgc ccgcgtaaaa acacattcag cgcactattg tatgaaagta
     8581 acccttgcac aataagcgaa gttacaacgc ctgaagacaa atacggtagg aaaaacgcaa
     8641 ccagataaag tcctttaaat ttcggcaagc cgttcactaa taccgcgaca atcatcgaaa
     8701 taattaacgc cataggaaca aaaacaatca aaaatttata agtaacaaaa aaggctgctt
     8761 gaactgctgg actagtaaac gctttaataa aattatcaaa gccaacaaaa ttaatttccg
     8821 gactcatcat gttccaatca gttacagata accaaatcga ccaaacaagc ggtactaaga
     8881 aaaatatcgc agtgaatatg agatacgggc tggtaaatga ccagcccaat ttgttatttc
     8941 gccgcttcat tcttgaagca ccccgtcctc cgctttcttc atatctgacc aagctttagc
     9001 aggttttttc tccccgcgta caatcggatt ccacgcttct tcaccaatga tttgttgaat
     9061 atcattatat tttgcgtcat ccatcgcagg gatactatat ggtacattag ctgcataaac
     9121 ttcgagttct ggattttctt taaagaatgc tgtgaaagtt tcgttttctg ttgcatcatc
     9181 acgcgcagga attaagttag ttgtttctaa gaatttcaag tcatttttgt catcgttata
     9241 aacaaatttc aagaaatcca ttgctgcttc tttttcttta tctgtcgctt gtgcatacat
     9301 tacaacgcct ttcgaatcag cgtatgtagc aacattttct tcattcgcca tgttatctgg
     9361 tactagtggc gctgtgattg catagttttc gttatattta agttccggga atttttcatc
     9421 ccagttaggg aaagtccacg ggccattatc tgccatgatg cttgttccag tttcaaatgg
     9481 atctgttgct ttacttgcaa gaagtaattt gtttttttgc aattcggaca taaatgttaa
     9541 taactctgtt ccagctttat cgtctgctac taatttgcca tcttctacaa atgcatttcc
     9601 tttagaagct gcatcataaa gtgggaagaa atcaaaccag cgcatccaag cagttggatc
     9661 agataaatca ccttttgccc aaagaacttt gtctggatat ttcgctttta attttttacc
     9721 aacttcaagc gcttcactat atgtttttgg cggtgcatca tagccaagtt ctttcagtgt
     9781 atctaaacgc caagcaaaaa gaattggatt ggagtaaact ggtagcacat attggtttcc
     9841 gtcagagaat ttccaagaat ccattgtttc gctcatgttt cgttctttga caacatcatc
     9901 aagtcctttt acatcgttca aagggacaat cgctttactg tcagctaatt gtgcagcgaa
     9961 actacgattg atattttcag acatggttgg tgccgtttta gaggcaatag ctgattggat
    10021 agttgcttcc gaagatgggc tttctttcat ttgggaaact tcaatcgtta catctggatt
    10081 ttctttttca taagcttttg ccatttcatc ccaatatttt acttgcgttg gatttggagc
    10141 tgcccaaaac gttacttttg ttttaccatt atcgtcactt ttgctgtttc caccaccaca
    10201 agcagtaagt aatgacccag caaccacaac actaagagct gcaatagcaa tttttctaat
    10261 cttcatatca ataatcctcc taattccact ttttgtaatt gtaagcgctt gattacgatt
    10321 acattatcac attacatttt tgtaatgtca ataattactt ttataaaacc taataaaatt
    10381 gaggttaatt tacccataaa acaaaaatga atagaattac tttctacatt actttttaat
    10441 tataaaattt ttgctatttt gtgaatttac ttctataata gaataaatag aggaaaacgg
    10501 aggggaacca tgaagaaagt tacgatgcag gatattgctg acaggctaaa tataaccaag
    10561 aattcagtct cgcaagcttt aggcaataaa aatggggtta gcgaacaaac taaactagcc
    10621 gtttttaaga tggcagatga gctaggctat aaatataaaa gagaaatcgc gcgtgaggtt
    10681 gtgaaagaaa aatttgcgct tttagcaact tctttcgccc tttcgcagcg cagttttttt
    10741 ggcgaaatta tcgataatat gaaacaaagc attatcgctc accaagccga acttattatt
    10801 tttccagtta cggatgagga agcgtctact aatcaattac cagagcagct cacaagcgag
    10861 aactggactg ggattttctt actttcgcat ataaacacgg attatagtaa aaaagttatc
    10921 gatctcggca tgcccgttgt gcttatagat catcatgatc cgcatctaaa agccgacgcg
    10981 gttatcagtc aaaataaaga tggtgctttt atggctgtag aatttttaat tcaaaataag
    11041 catcagaaaa tcggttttct cggtgatgtt actttctctc caagttatga agagcggcta
    11101 gaaggataca aaaaagcttt gcactactat cacattcctt ttaacgaaaa atacgccatc
    11161 actcgtatca aagaagaaca aacgacatta tatagaactt tagatgaact ggacgaactc
    11221 cctactgctt ggttttgtgt caactcagga cttgggttta ttctcaatac ttatttgcaa
    11281 tcaaaaggct ataatatccc taatgactta tcgattattt gctttgataa taccgagttt
    11341 actgtactaa gcaatccaca gctaactaca atgtgtacca acctaagcta tatgggtgag
    11401 aaggctgtcg aactcatgta taatcgcata agaaaaccag atgaagggtt tgttcatctg
    11461 gcgcttgcta ctaatttaat agcccgagat tctgttggtg aaaacaaaaa agccgattca
    11521 gcgagtgaaa gctgaatcgg ttttctttat tgagcattta aaacagcgac atctttttgc
    11581 aaaaatgtta aaacagctgc aaataatttg tccgcttgtt cgtcctgaca aatcacgtgt
    11641 ttcgaacctt ctaatataaa taattctttt ggaccaggaa tactttccat taagaaatta
    11701 acactttttt cagcaggaac tacttggtcg gcactgcctt gtgcaataaa agttggaatt
    11761 tcaatatgct caaaaaccgg ctttgctaaa gctaccattt ttttgaattg tagcgtggaa
    11821 gtccaaggcg tttccgttac tttcttttga taacgtttga acatcgggct gtttttgagc
    11881 gttacttctt ttgcttccgt taatacttgc ttggaatttt cgacaagttg cggccattcc
    11941 attgcattta cggctgtgct cagaagtact agttttttta cttccggata atgtctcgcg
    12001 agccatccag cgagcagtcc acccatggaa aaaccaataa tatatacttc atcgtcttct
    12061 tttagcattt ggcttaaaat actatctaca aaaacaatcc aatctttata cgtcacattt
    12121 tttaagtggc gcaggtgatc atggccaggt aatgtgggtg ctaaaacatc ccaatctgta
    12181 tgctctcgca aatagtcagc gagcggcttc acctcggacg gcgaaccagt aaaaccatga
    12241 atacacaaac aagcaaccat tatgcctttc ctcctgtcca aattattacc aattaagcgg
    12301 taatatgttc tgtccaattt tagtcgttac ttaataataa gattttctac cacatctttc
    12361 aagcccattc cgtaagaacc tttgaccagt atccattcat ttccattcat ttctgaaaga
    12421 agcgccgtct caagcgattc tttcgtgtta aaatgatgaa cttttccctg accaattttg
    12481 gcttccgcta tgtcaccaaa agctttcatc gcctcaccat acaagaaaat cttctcaatc
    12541 ataccctttt ctaatacttc ggctgattct tgatgtaact ttgtcgacaa atctccaagt
    12601 tccaacatat cagcaaggac caaatattta ggtttgccgc tcgaatccat atgcataaat
    12661 gtttttaaaa ccgtttttaa tgctgttgga ctagagttat aagcgtcatt caaaatacgc
    12721 gcgccacttt tcgttgtaat ccattctaaa cgacttttag aacgttccat atttttcagc
    12781 gcagattgaa ttttttcacc ttcaattcca atttctcttg ccgcaagcat cgccgccatt
    12841 gtattgaaaa cattatgttc accaataata gggacaaaaa tttctagctc cggctcccaa
    12901 ttagttataa aagaagtgcc ttccgcttcc gcacgaattt ctaacggata aatttccgca
    12961 gcttccgact taccaaaagt aagttgtctg aaatcgccat taatatttcc tagcagcaaa
    13021 gtttcttcgt gcggataaat taaaatcccg cttggattaa gcccggcagt aatttccagt
    13081 tttgctttgg caatttcttc acgcgaacca agatattcaa tatgcgcctc gccgatattc
    13141 gtaataatcg cgatatcggg tttggcaatt ttggaaagca cttcgatttc atgacgatga
    13201 ttcatgccca tttcaagtac agcaacttcg gtatcttctg gcatcgttaa aatggtgtac
    13261 ggtaagccga tatgattatt aaaattccca ccagtataat gcactttgta cgttgtttct
    13321 acaatcgctg ccattatatc ttttgtcgtc gttttaccat tgcttccggt aatcgcaata
    13381 acttttggct ttacttgttg gatatatttc gccgctagtt cttgaagtgc gagcaaagta
    13441 tcttctacta aaataaccgg gaaatccatc ggtggattgg gtacatcttt ttgccagaaa
    13501 gtagccactg cacccatttc tcgcgcttga ctcacaaatt catgtccatc gcgtacattc
    13561 ccaacaaatg gaacaaataa atcccctgac tttatttgcc ttgtatcaaa acaaacgcca
    13621 gtaatgacga catcgcgaaa tgcatctaca tggatggaac tatctaacat tgctactact
    13681 tcgcctactg tttttttcaa attaaatctc tctcttccat aaaaaagcag cttccgcata
    13741 tgaaaactgc tttcttgttt attttagtct tctaatttat atttaagtgc atttttggct
    13801 gcgtggcgtt ctttcgctaa atcgactaat cgttcaatta acgctccgta aggtaagccc
    13861 gtttcctgcc aaagaagagg atacatgctg tacggtgtga aaccaggcat tgtattcact
    13921 tcatttaaga ataactgatt atcttccgtt aagaaaaagt ccgctcgcac tagtccgctt
    13981 gcatcaagcc ctaggaatgc ttgaaccgca tattctttca tttgttccaa gatttccgga
    14041 tctacttcag tcggaataat taacgcagta ttattatcct ggtattttgc tttgtaatcg
    14101 taaaacgtag caactgcacc ttctggcaaa atttcacccg gaacagagca aactggcgta
    14161 tcatttccaa gtacgcccat ttcgatttcg cgcgcaacaa caccttgttc aacaaccaca
    14221 cgacggtcat ataaaaatgc ttctgtcatt gcgtccgcta attctttttt gttcgttgcc
    14281 ttactaatac caacactcga accaaggttt gctggtttta cgaaaactgg ataggtaagt
    14341 acttcttcca tctccgcaac catttccgct tgatagttct tccaatcaat taatcgaaca
    14401 gcaactgctg gaacttgcgg gattccagca tctgcaaaga ttttcttcat cacgattttg
    14461 tccattgcag cagaagatgc caagaccccg ttaccaacat atggaatgtt taatacttcg
    14521 aacaatcctt gaacagtgcc atcttctccg tttggaccat gtaaaagcgg gaatacgact
    14581 gtctcttgtc cgtctgcttc taaaacggcc gggctaatcg cttccccttc tgatttttct
    14641 gattcagttg ttgcaagttt tattgtatct gtagccgaaa aacgtaattg ttcaacaaaa
    14701 tctaacttcc cagaaagaag tggtccttga atccactcac cttcattcgt aatatatatt
    14761 ggcgcagctt cgaatttttc taaatccaaa gcattgataa ctgaaaatgc tgtttgtaag
    14821 gaaacttcgt gttcagcaga tttcccaccg tataacaaaa ttaatttggt tttcataata
    14881 cccctccgtc attattcgct ttatctattt taccatgttt tgacaggatg aaaaggtata
    14941 actaaaaaat aggttgaaaa aatcttcttt tttaaataag aaccgtgcac gcttattcca
    15001 aaaaggactt tttcaaccta aaatattaaa caccagatgt taatttcaaa ccgaccacgc
    15061 cggcaataat catcgtaata aagagcaatt tgccgacact tttacgttct ttaaaaacaa
    15121 tcattccaag tgtcacacta ccaacggcac caattccggt ccaaatcgca taacctgtac
    15181 cgattggaat cgtcttaagc gcgagggata gtaaaaagaa acttgcagac ataaaaataa
    15241 tcgtcagtat cgcatatcca acctttttaa agccatctga taattttagc atgacaacga
    15301 agaccatttc gcataaacct gctacgagta aaaatatcca atccatcgtt atttagcctc
    15361 cttttcagac tcattgccgt ccactaattt caaaccaata atccctgtta ataatacgat
    15421 aagcgaaaca atcttccaaa aagaaacacc ttctgaaagg aaaatcatcc caataatcgc
    15481 tgtcccagca gccccaattc cagtaaaaac cgcatacgcc gtcccaattg gaatggactt
    15541 catggaaatc gaaaacaaac caaaactaac tatcaaaaat gctatcgtca aaaggctcca
    15601 ccctaacatc gtgaaaccat gcgattcttt tagtccaaaa gcccaaacaa tttctgataa
    15661 tcctgccata attaaataaa accaagccaa tttccttacc tccaattcat ttgagtaaac
    15721 ttgcgagaac tgcccaagca gattttcttc gcaactcaaa ttccgtttca tcataaatgc
    15781 cgtgttccac actcagtcca tcaagaagtg cataaaaaac gtgcatccat cttacaagtg
    15841 cttcttcgga tactattttt tctaacgttt cgcgtaatat ccgattcgtc agttgttcat
    15901 atgtctttgt ttcttccttt aattcttgaa aaagcgactt aggtggataa aagacggcac
    15961 gctggaaaaa tttcttttca tcaggattgc tagaaaaatc tgtcgctaca aagaaaatag
    16021 attgtagctt cttttcccca accaaatcat ctcgctctgc tactttccct agttctgtta
    16081 attccatctg aatactatct tgataaactt ctaaaaatag ggcttctttt gatgcaaaat
    16141 gggcatataa cgatggtgtt ttaattccaa cagctttcgc gatttccgaa agcgctgttc
    16201 catcatagcc tttttctgca aaaagagtta atgcgacttc tttgattagc tttttcgtca
    16261 taaagcaccc tcctaactaa cgttcattag ttaaatttta acaaataaaa aaccaaacgt
    16321 aaaggaaaaa gtttgatttt ttatttttcg atatatttcc attcattttg ttttaaatca
    16381 tacactaatt ttgcaacttc ttcttcataa taaatcttag aagagatttc tagttctgtc
    16441 atttcttctg tgagtccatg cccaattggt acttcgattt gtgtgcgcgt tctcacgaca
    16501 tcatcgagcg caatacaagc accgtcttta aaatgatctg ccattttttt caaaagttca
    16561 actggcggct ccgcaacata ttttttctta ccaaacgaaa aaataccctt ctcattaact
    16621 agttctgccg ttttacgtgc aatgacgtaa cttagtaaca tataaaaatg attaagattc
    16681 cgataatata ctttattgta acgaccgtct tccctagtta agtaaacaaa attattttgt
    16741 aatttataat aaaatggtga gcgcaaatga cgcccagtat gtgcaagata aagcatttcc
    16801 gctacttctt gtggggttag ttggttcaaa agttctacat cttcaaaatc aatccaacac
    16861 agtggattaa aattctcttt ggaaatattt gctaaatcgc ctggctctaa gtagtgaaaa
    16921 gctgtgtgtg cattgtagga tgcgtcttca atattatgct taattaacaa aatattttca
    16981 gggggctgtc ccacgccatt taagaaatca caaaaagaaa tgccgcttgt cgccacatta
    17041 ttaataacat gatcaatatg cacataaata gattgttggt taaccgcttc ttttttcatg
    17101 tatatgcctc actctatttc tattttcttc tatgacaaaa gccttccatt ccatcataca
    17161 acatttttgc gtaaaaagga taacagaaac atcaaaactt aatgactaat ttatgacaaa
    17221 gaaaaaaagt gaagttattt tatatgtaaa tcatgctgct ttgagtcatt ttacttcaaa
    17281 gcctcacaaa atatcacata aaaactccac ttttcgattt actgcaatcg aagtgtcata
    17341 ttcggcatcg ctttattact aaccgctttc caaatatctt ttcgtgattt tgttttttca
    17401 actactattc ctttttcttt gagctgacga attacttgat tcaagtcttt ttgattatta
    17461 tccaaactca tcactccatc ttcaaaattt gttttcattc ttttattttt tctctctttc
    17521 cttactttaa catattctct ttactaagaa taccctatta attaaaaaac taaccattat
    17581 cttctctttt tttcaagaaa gcgtttgaaa cccgaatttt tttagttatt ttccagttaa
    17641 tataaagaaa aacaccaaaa atctatactt cagctatgct tttataatca tttcagggca
    17701 aatatgtaaa ggtgtttcct ttttagtata aaataaaatc ccaagaaata ggcgtttaat
    17761 tggt
//
LOCUS       DASDXX010000038        17761 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.038, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000038 DASDXX010000000
VERSION     DASDXX010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17761
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.038"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            228..1064
                     /locus_tag="U0280_001028"
     CDS             228..1064
                     /locus_tag="U0280_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM2270982.1"
                     /translation="MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKI
                     EKVFELKDDTMDKFKMIVNEIPIQFLEVTDDIVKLFKMKTTKDISDVIYISLSDHLYF
                     ATQRLQENVVIENPLSWEVKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFV
                     NAEVDSDMNDVTHIMQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGE
                     TIDEMDEFLYQTVKKSRGAIFECIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRK
                     NN"
     gene            1164..3017
                     /locus_tag="U0280_001029"
     CDS             1164..3017
                     /locus_tag="U0280_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2270983.1"
                     /translation="MDYNQLAKEILQAVGGKNNVNEVYHCITRLRFQLKDQSKVNEKQ
                     LKDLDKVMGTNVAGNQFQVIIGNDVPKVFDALVTENPAWKNKETTNKTTRQKGIKGFF
                     SNIFDALSGVFAPILPAIAGAGLIKGFMALFVSLGWLATDTETYRILLAIGDGVFYFL
                     PILVAVSAARYFKANMFVALGIGAALLYPDLTALLSAGTTPHFIGLPVTPVTYAYSVI
                     PILLAIWIMSYVEKWVDRIIPTSLKLLFVPLITMFIVVPLTLVVIGPLGTFVGDGVSG
                     GINWLLNNGGVIGGILIGGAMAIIVMTGMHYAIVPFVISNLAKYGYDKFLPLTYISNM
                     SQAGATFGVFFRAKDKKLKSLAFSTGLTALMGVTEPAMYGINVVYKRPFMASLIGGAA
                     GGGFAMMFGVKAYVLTGNGGIPGLPGLVGDTFVYALIAMALAFIVALIFSYIFGIDEQ
                     IVEATPVAEKIAAGTEVLQAPVTGELVKMSQVNDTTFADEIMGKSIAIKPNEGKLYAP
                     ANGTIISLFKTKHAIAMQSDNGAEILLHVGIDTVKLDGNYFTAHVATGDVVEQGDLLV
                     TFDMEKIAEKYDTTTMMVITNTNEYALVEAKDSGTVTKGNQVMELRSEQNE"
     gene            3010..4458
                     /locus_tag="U0280_001030"
     CDS             3010..4458
                     /locus_tag="U0280_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEM2270984.1"
                     /translation="MSNTKFPDGFMWGGATAANQFEGGYNLGGKGLACADLFTGGTHT
                     EPRRITAQLEESTFYPSHEAVDFYHHYKEDIKLMAEAGFKVFRMSINWTRIFPTGKEA
                     EPNEEGLQFYEDVFKELKKYQIEPLVTIAHFDIPLALTNEVNGWASRDLIDYYLHYCE
                     VIFKRYKHLVKHWLTFNEINTATMEIGNYLSLGIRHAEGDFLHQKDDPTVRYQALHHQ
                     FVASAKAVKLGHSINPEFMIGCMIAYMPRYPRTCEPTDVLLAKQTEAMHSHFCGDVHV
                     KGYYPFYAKTFFKDNGIELEFDPEDEQVLREGTVDFYTFSYYLTLCASNDPAYKNSGK
                     SVIGGAENPYLKTNDWGMQTDPVGLRIALNDLYTRYNIPLMVVENGLGAFDKLEDDGT
                     INDPYRIDYFKEHILQMHKAIQDGVDLIGFTIWGCIDLVSASTGEMAKRYGIIYVDKY
                     DDGTGDYSRKKKASYYWYKDVISSNGEIGLRE"
     gene            complement(4498..6828)
                     /gene="gshAB"
                     /locus_tag="U0280_001031"
     CDS             complement(4498..6828)
                     /gene="gshAB"
                     /locus_tag="U0280_001031"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HEM2270985.1"
                     /translation="MIKLDMTMLDSFKEDPKLRKLLFSGHFGLEKENIRVTSDGKLAL
                     TPHPAIFGPKEDNPYIKTDFSESQIEMITPVTDSIDSVYEWLENLHNIVSLRSENELL
                     WPSSNPPILPAEEDIPIAEYKTPDSPDRKYREHLAKGYGKKIQLLSGIHYNFSFPEAL
                     IDGLYDKISLPEESKQDFKNRLYLKVAKYFMKNRWLLIYLTGASPVYLADFSKTKHDE
                     SLPDGSSALRDGISLRNSNAGYKNKEALYVDYNSFDAYISSISNYIEAGKIESMREFY
                     NPIRLKNAHTDQTVESLAEHGVEYLEIRSIDLNPLESNGISKDELAFIHLFLIKGLLS
                     EDRELCSNNQQLADENENNIALNGLAQPALKNCDNEEISVVEAGLLELNKMSDFIQSL
                     RPEDTKLQAIIEKQKERLLHPEKTIAAQVKQQVTKEGYVDFHLNQAKTYMEETEALAY
                     KLIGAEDMELSTQIIWKDAIARGIKVDVLDRAENFLRFQKGDHVEYVKQASKTSKDNY
                     VSVLMMENKVVTKLVLAEHDIRVPFGDSFSDQALALEAFSLFEDKQIVVKPKSTNYGW
                     GISIFKNKFTLEDYQEALNIAFSYDSSVIIEEFIPGDEFRFLVINDKVEAVLKRVPAN
                     VTGDGIHTVRELVEEKNTDPLRGTDHLKPLEKIRTGPEETLMLSMQNLSWDSIPKAEE
                     IIYLRENSNVSTGGDSIDYTEEMDDYFKEIAIRATQVLDAKICGVDIIVPRETIDRDK
                     HAIIELNFNPAMHMHCFPYQGEKKKIGDKILDFLFE"
     gene            6998..7885
                     /locus_tag="U0280_001032"
     CDS             6998..7885
                     /locus_tag="U0280_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2270986.1"
                     /translation="MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFS
                     TMTGIYLPDEGDVFLGEESIFKHPEVKQQLFFLEDNMNHFNTYSVQTVVKIYRQIYTT
                     FDEAFFNELMQRFELPMKAKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIII
                     KKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAV
                     KIQVAFKTKKIPDFVKNNAQLLYRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSIS
                     IEDIFTVHLANDKIDYYEI"
     gene            7912..9042
                     /locus_tag="U0280_001033"
     CDS             7912..9042
                     /locus_tag="U0280_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM2270987.1"
                     /translation="MFNRGLWYREWRNMRWMLLGVVILFFLGITLGLMSDADRWNSQK
                     EYYESSEFLKQQKENPEFKTSDEEMKASLTVAYLAVPMYTNFVQDEFVDYMPFMFYFQ
                     VEMFFTLIKVSVFILGVLAVIFERYTRANRFTASLPYKRTHIVGVKMMMGIATIGLSY
                     LISMGIGLTYFMSHVPKEYIQLDAPKFWVDIVGGLFTYLLIFLVAILIGLLIGSPIAA
                     AFVAFGVMLLPSVLNPTLDNMYNFIWPHGGDKGMSKLLRFEDYVNIFSPFSFESASFG
                     AVIFSVILSVLMVVAILILYKKQHIERSGYLFAFSWVKWPFLVLFSLFVGMTAANLAV
                     TDTELGFVGYLAWGIGATIGSFILALYILNKMRGLFQLSKTN"
     gene            9113..9775
                     /locus_tag="U0280_001034"
     CDS             9113..9775
                     /locus_tag="U0280_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HEM2270988.1"
                     /translation="MTTETETIKPQLAELKANLTKRNLQYVMEVEKHLRETHYSAEQQ
                     EIIVYEMSEKILAEQKKGITARKLFNLTPTEYVVSLDVKAATVEQNTDKWWLVLDGGL
                     LVLGAMMLISGISAYFQKNAQTLGIIVLLITAVVGGFAMLILRKYASNMRAGQKGGTI
                     KYLLVAVGVIAVWMFVMTIVQVTIPPNINVALSPIVNTVGGAIIIALRFYVKKKKNIP
                     SL"
     gene            9876..10610
                     /locus_tag="U0280_001035"
     CDS             9876..10610
                     /locus_tag="U0280_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2270989.1"
                     /translation="MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSP
                     ASIVRFTRKLGCEGFSEFKVKLKQEATREVKKKTADTVEVLEEFFERTMNRDYDHVLD
                     AAAEIINEADLVVFFGIGTSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAV
                     MIILSVSGETDQVLEQAQNMQQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKT
                     NITTQIPVLFLLEAMAKKNYNQEQEE"
     gene            complement(10650..10958)
                     /locus_tag="U0280_001036"
     CDS             complement(10650..10958)
                     /locus_tag="U0280_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2270990.1"
                     /translation="MNEMETVIFGMISQVGSARSSYLEGLRAAREGNFEEAEAKLQEG
                     SETLANGHHEHHKLIQKEASGEKVEIQLLLIHAEDLLITTETLREVVTEFVHVYKKIS
                     "
     gene            complement(10951..11835)
                     /gene="bglK"
                     /locus_tag="U0280_001037"
     CDS             complement(10951..11835)
                     /gene="bglK"
                     /locus_tag="U0280_001037"
                     /EC_number="2.7.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucoside kinase"
                     /protein_id="HEM2270991.1"
                     /translation="MKIAAFDIGGTALKMGVVLPHGEIILTKSAEIIASDGDQILAEM
                     KLFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETGIPVAIEN
                     DANCALLAEKWLGKGQNLDDFLCLTIGTGIGGGIFSNGALVRGGRFRAGEFGYMFSER
                     PGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFAKYDGHDAVSERLITEF
                     YTGICTGLYNLIYLFDPTHIFIGGGITSRPTFITELKHHMESFGLRDTIIETATHKNQ
                     AGLLGAVYHFLQEENRHE"
     gene            complement(11847..13199)
                     /locus_tag="U0280_001038"
     CDS             complement(11847..13199)
                     /locus_tag="U0280_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2270992.1"
                     /translation="MSIMSKFEHGMERVLVPVANKLNSQRHIAAIRDAFILVFPLIMA
                     GSIITLINFAVLSPDGFIAKILFLGKIFPNLADAQAVFSPVMQGSTNIMAILIVFLVA
                     RNLAIFFKQDDLLCGLTSIGAFFIVYTPYTVVDNASYMTIKFLGAQGLFVAIIVAIIT
                     GEVFSRLARSPRLMIKMPDQVPPAVARSFKVLIPVIIITILFSVINYLITLIAPEGLN
                     DLVYTVIQAPLKDMGTNVFSVIIIGLVSNLLWVLGIHGPNTVAAIRDTIFTEPNLDNL
                     SYVAQHGSAWGAPYPATWAGLNDGFANYGGSGMTLGLLIAIFIASRRADYRDIAKLSL
                     APGIFNINEPVIFGLPIVLNPIMVIPFIITPAINTLIGYFFISTKLIPPVAYQVPWTT
                     PGPLIPFLGTGGNWLALLVGLLCLAVATVIYLPFVLVSNKIAASDAAMDKNATASTEQ
                     "
     gene            complement(13232..13534)
                     /locus_tag="U0280_001039"
     CDS             complement(13232..13534)
                     /locus_tag="U0280_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2270993.1"
                     /translation="MKKILLVCAAGMSTSLLVTKMKAHATSIGEEIEIEALPVSEASS
                     VVDKMDIVMLGPQVRYQKPQVDELVQGRIPVIVIDMKDYGMLNGKAVLEKAFAEIG"
     gene            complement(13578..15032)
                     /locus_tag="U0280_001040"
     CDS             complement(13578..15032)
                     /locus_tag="U0280_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2270994.1"
                     /translation="MEHNKLKPFPKDFLWGSASAAYQVEGAWDEDGKGPSVWDEFVRI
                     PGTTFKETNGDVAVDNYHRYKEDVALMAEQGLKAYRFSVAWSRVIPHGNGEVNEAGLK
                     FYDNLIDELLSYGIEPVVTLYHWDIPQGLQDEYGGWESRKVVEDFTNYAALLFERFNG
                     RVKYWVTLNEQNVFISHGYKLAYHPPGVSDDKRMFAANHNANLANASAIAKFRELGTS
                     GKIGPSFAYGPSYSIDANPANVLASENSEEFNAHFWMDVYTWGEYPTATWNWLEEHGL
                     APEILPGDTELLKKGKPDFMGVNYYRSMTHAFNGKDGVGSGKMNTTGEKGTSEETGVP
                     GLYKNTNNPYLEKTNWDWDIDPTGLRIGLRRITNRYKLPIMITENGLGEYDSLTEDHK
                     IHDEYRIEYIRAHALAIQEAITDGVEMLGYCTWSFTDLLSWLNGYQKRYGFVYVDRDE
                     NDEKELKRYKKDSFYWYKKTIEANGANLVEEQGK"
     gene            complement(15060..15368)
                     /locus_tag="U0280_001041"
     CDS             complement(15060..15368)
                     /locus_tag="U0280_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2270995.1"
                     /translation="MGRLRQCNCNTGKNCTDNIQKFSYTSSRIQKKHVISPLFINTYR
                     IRDTSPNVNCSSNHMHETQRFSSETYTIDMKHEPKAPKSIYQLVETVYINKASKTKTD
                     "
     gene            15550..17160
                     /locus_tag="U0280_001042"
     CDS             15550..17160
                     /locus_tag="U0280_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM2270996.1"
                     /translation="MTIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKST
                     ILKILKGTEGVDSGIVTSKKGAKIGLLEQLSTVDPNIIVEQYLRTSFGELEELEKELR
                     ALEGEMATNSSEKLMNRYGDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLS
                     GGEKTKAALAHLLLQKTDLLLLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFL
                     DEVVGKMVELENRELIVYHTNFSGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLR
                     QWAMQANPPNDAMFRRAKNMERALERMEKVKRPVLTQKQMQLQFDEAGRSGQEVVVME
                     NLSKSFSEKAIVQDVSLQIRQGERVAIIGENGAGKSTLLKIMEGKVVPDVGMIKVGAS
                     VKIASLSQQMEELNEKLTVLDAFRDKVAVTEGEARQMLAGFMFYGEMVFRKVGNISGG
                     ERMRLRLAQFINMPVNTLILDEPTNHLDIASREILEEAIRAFSGTIITVSHDRYFIDQ
                     LCSKVIWLENKQLTVYEGNYSYATSKRR"
     gene            17218..17748
                     /locus_tag="U0280_001043"
     CDS             17218..17748
                     /locus_tag="U0280_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose-binding protein"
                     /protein_id="HEM2270997.1"
                     /translation="MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDL
                     LKECQEVINRIGTCPAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKA
                     LDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFD
                     EENLKLYNKLINSEVV"
BASE COUNT         5330 a         2998 c         3953 g         5480 t
ORIGIN      
        1 attttaaatt taattacaaa taagatactg ttacctaggg gaggaataat cgaaaatagt
       61 taagggtaga atggttttaa caaaacccat tgacagcgat ttcatatggt ggtactatat
      121 ccatgaggct tgttaccggt aatgcgggca ataccagata ttagtttttt tggctgatat
      181 gtgtggtatt gctcttttta ttttgcttca aataggtggt gatttgtttg agaattgaga
      241 ggattttaaa taataatatt gtaagtgcga ttgacgagga tgcgcaggaa ttgctgattt
      301 tgggaaaggg gcttggcttt aattctaaag ttggcgatcc aattaatgaa tcgaaaatcg
      361 aaaaagtttt tgagttgaaa gatgacacaa tggataagtt taaaatgatt gtaaatgaaa
      421 ttccaataca atttttagaa gtaactgacg atattgtgaa gcttttcaaa atgaaaacga
      481 cgaaagatat tagtgatgtc atctatattt ctctttcgga tcatctgtac tttgccacgc
      541 aacgtttgca agaaaacgtg gttatcgaaa atccgctctc gtgggaagtg aaacgctttt
      601 atcaggaaga atacgcagtg gccaaagagg ctgcgaaaat ggtggaaagt aagcttgaaa
      661 tagagcttcc tgatgcagaa atttctaata tagcgctaca ttttgttaat gcggaagtag
      721 atagtgatat gaacgacgtc acacacatta tgcagttaat tcaagaaatt atttctatta
      781 ttaaatatca ttttaacatt gaatttgatg aagaaagtac gaattattat cgttttatga
      841 cccatctgaa gtttttctgt caacgcgtaa ttattggcga gacaattgac gaaatggatg
      901 aatttcttta tcaaacagtg aagaaaagta gaggcgctat tttcgaatgt attgataaaa
      961 ttggtgtgtt tttggaaaag aattatcaat ttacgatgag tcattcggaa cagttttatc
     1021 tggcgcttca tattgaacgg cttttaaaaa gaaaaaataa ctaataggct tgttaccgcg
     1081 atttgcgggc aatacctgga tgattgtatg cttttttagg tgcatttcat tcaggttttt
     1141 ctattatatt taggaggatt agcatggact acaatcaatt agcaaaagaa attttacagg
     1201 cagtcggtgg gaaaaataat gtgaatgaag tttatcattg cattaccaga ctacggtttc
     1261 aattaaaaga tcaatcgaaa gtaaatgaaa aacaattaaa agatttggat aaagtgatgg
     1321 ggacgaatgt tgcggggaat caattccaag taattatcgg aaatgacgtg cctaaagtgt
     1381 ttgacgcatt agtgacagaa aatcctgctt ggaaaaacaa agaaacgaca aataaaacga
     1441 cacggcaaaa aggaataaaa ggatttttct cgaatatctt tgatgcactt tcgggcgtgt
     1501 ttgcaccaat tcttcctgcg attgcgggag caggtttaat caaaggtttc atggcattat
     1561 ttgtttcact tggttggtta gcaacagata cagaaactta ccgtatcttg ttagctatcg
     1621 gtgacggggt attttacttc ttgccaattt tagttgctgt aagtgccgcg cgttacttta
     1681 aagcgaatat gtttgtcgcg cttggaattg gagcggcgct actttatccg gatttaacgg
     1741 ctttacttag tgcggggaca acgccacact ttattgggtt accagtaact ccagtgacgt
     1801 atgcttactc tgttattccg attttacttg caatttggat tatgtcttat gtggaaaaat
     1861 gggtggaccg gattattcca acctcgttaa aactgttgtt tgtcccatta attacaatgt
     1921 ttattgttgt tcctttgacg cttgttgtta ttgggccact aggtacattt gttggagacg
     1981 gtgtatctgg cggaattaac tggttattaa ataatggtgg agttattggc ggtatcttga
     2041 ttggtggtgc catggccatt atcgttatga ctggtatgca ctatgcaatt gttccatttg
     2101 ttattagtaa tttagcaaaa tatggttatg ataaattttt accgttaact tatatttcca
     2161 atatgagcca agcgggagcg actttcggtg tatttttccg ggcaaaagat aaaaaactga
     2221 aatcattagc attttcaact ggtttaactg cattaatggg tgtcacggaa ccggcaatgt
     2281 acgggataaa tgtggtatat aaacgtcctt tcatggcgtc gttaattggt ggggctgctg
     2341 gtggtggctt tgcaatgatg tttggtgtaa aagcgtatgt cttaactggt aacggtggta
     2401 ttcctggact tccaggtctt gtcggagata cttttgttta tgcattaatt gcgatggcct
     2461 tagcatttat cgtggcttta attttctctt atattttcgg tattgatgag caaatagtag
     2521 aagcaactcc tgtagcagaa aaaatagcag ctgggacaga agttttgcaa gctccagtta
     2581 ctggtgaatt agtaaaaatg agccaagtaa atgatactac ttttgcagat gaaattatgg
     2641 gtaaaagtat tgcgattaag ccaaatgaag gtaaacttta tgctccagct aacggcacaa
     2701 tcatttcgct tttcaaaaca aaacatgcga ttgctatgca gtcagataat ggcgctgaaa
     2761 tattattaca tgtaggcatt gatacagtga agcttgatgg taattacttc acggcacatg
     2821 ttgcgacggg tgatgtagtg gaacaaggag atttattagt aacgtttgat atggaaaaaa
     2881 ttgcagaaaa atatgataca acaacgatga tggtaattac aaatactaat gaatatgctt
     2941 tggtagaagc taaggatagt ggaacggtaa cgaaagggaa tcaagtaatg gaattaagga
     3001 gtgagcaaaa tgagtaatac gaagtttcca gatggcttta tgtggggcgg ggcgaccgcg
     3061 gctaaccagt ttgaaggtgg ttataattta ggcggaaaag ggcttgcctg tgcggattta
     3121 ttcactggtg gaacgcatac agagccaaga agaattaccg cacaattaga agaatccact
     3181 ttttatccaa gtcatgaagc agtggacttt tatcatcatt ataaagagga tattaagtta
     3241 atggcagaag ctggatttaa agtgttccgg atgtccataa actggactcg tattttcccg
     3301 acaggaaagg aagcagagcc taacgaggaa ggattacagt tttatgaaga tgtttttaag
     3361 gagctgaaaa aatatcagat tgaaccgtta gtgacgattg ctcattttga tattccgcta
     3421 gcattaacga atgaggtgaa cggctgggcg tcgcgtgatt tgattgatta ctatcttcat
     3481 tattgtgaag tgatttttaa acgctataaa catttagtaa aacactggtt gacgttcaat
     3541 gaaataaata ctgcaacaat ggaaattggg aattatttat cgcttggcat tcgtcatgcg
     3601 gagggagatt tccttcatca aaaagatgac ccaacagtga gatatcaagc ccttcatcat
     3661 caatttgttg ctagtgcaaa agcggtaaaa ctaggccata gcatcaaccc agaattcatg
     3721 attggctgca tgattgctta tatgccacgc tacccgcgta cttgcgaacc aactgatgtc
     3781 ttgttggcta agcaaacgga agcaatgcac agccatttct gcggcgacgt tcatgtcaaa
     3841 gggtattatc ctttttatgc aaaaacattc tttaaagata atggtattga gcttgaattt
     3901 gacccagaag atgaacaagt tttgcgagaa ggcacggttg atttttatac ttttagctat
     3961 tatttaacgc tttgtgcatc caacgatcct gcctataaaa attcgggaaa aagtgttatt
     4021 ggaggggctg aaaatcctta tttaaaaaca aatgattggg gaatgcagac agatcctgta
     4081 gggcttcgga ttgcactgaa tgatttatat actcgctata atattccgct tatggtagtt
     4141 gaaaatggtt taggagcctt tgataaattg gaagacgatg ggacgattaa tgatccgtat
     4201 cgaattgatt atttcaaaga acatattctt caaatgcata aagcaattca agatggtgta
     4261 gatttgattg gatttactat ttggggttgt attgacctag tgagcgcatc tacaggggaa
     4321 atggccaaac gttatggtat tatttatgtg gataaatacg atgatggaac cggtgattat
     4381 tcgcgtaaaa agaaagcatc ctattattgg tataaagatg tgattagttc aaatggtgaa
     4441 attggattga gagagtaata taaaatccca gctacgaaac tagtagctgg gattttttta
     4501 ttcaaataag aaatctaaaa tcttatcacc aatttttttc ttctcccctt gataagggaa
     4561 gcagtgcatg tgcatcgcgg gattgaaatt aagctcgatg atagcatgct tatcacggtc
     4621 gattgtttca cgtggaacaa ttatgtctac gccgcaaatt ttggcgtcaa gtacttgtgt
     4681 cgcacgaata gctatctctt tgaagtaatc gtccatctct tcagtatagt caatgctgtc
     4741 tccacctgtg ctgacgttgg agttttcgcg aaggtagata atctcttctg ctttaggtat
     4801 gctgtcccaa gaaaggtttt gcatagagag catgagcgtt tcttctggac cagtacggat
     4861 tttttcaagt ggtttcaaat ggtctgttcc gcgcaaagga tcagtgttct tttcttcaac
     4921 cagctcgcgc actgtatgga ttccgtcgcc ggttacgtta gcggggacac gttttagtac
     4981 agcttcaact ttgtcgttaa taactaagaa gcggaattcg tcgccaggaa tgaactcttc
     5041 gataataacg gagctatcat agctaaatgc gatatttaaa gcttcttggt aatcttccag
     5101 cgtgaattta tttttaaaaa tactgatacc ccacccgtag ttggtggatt ttggtttaac
     5161 gacaatttgt ttatcctcaa atagggagaa agcttctagt gcaagggctt ggtcgctaaa
     5221 actgtcgcca aatggaacgc gaatatcatg ttctgcaagt acaagtttag taactacttt
     5281 attttccatc attaaaacgg aaacgtagtt gtctttggat gttttgctcg cttgttttac
     5341 atactccaca tggtcgcctt tttggaagcg aaggaagttt tcggcccggt ctaatacatc
     5401 gactttgatg ccgcgcgcga tggcgtcttt ccaaatgatt tgggtggaaa gctccatgtc
     5461 ttctgcgcca atcaatttgt aggctaaagc ttcggtttct tccatgtaag ttttggcttg
     5521 gtttaaatgg aagtcaacgt agccttcttt tgttacttgt tgtttcactt gtgcagcaat
     5581 cgttttttca gggtgtagca gacgttcttt ttgtttttcg atgattgctt ggagtttggt
     5641 gtcttctggt cgcaagcttt ggatgaaatc gctcatctta ttaagctcta aaagcccggc
     5701 ctctacgaca gatatttctt cattatcaca atttttaagg gcaggttgcg cgagaccatt
     5761 tagcgcaata ttattttcat tttcatcggc taattgttgg ttgttggagc ataattcgcg
     5821 atcttctgaa agcaaacctt taattaaaaa taggtgaata aaagcaagct cgtctttaga
     5881 aataccattc gactctaatg gattcagatc aatagagcga atttctaaat attccacgcc
     5941 gtgctccgct aaactttcga ctgtttggtc ggtatgcgca tttttcaaac gaatcgggtt
     6001 gtaaaattca cgcatactct cgattttccc tgcttcgata tagttagaga tgctagaaat
     6061 ataagcgtcg aaagaattgt aatcaacgta aagagcttct ttgtttttat aaccagcatt
     6121 actatttcga agagaaattc catcacgaag cgcgctacta ccgtccggaa gggattcatc
     6181 gtgcttcgtt ttcgagaaat cagcaaggta aaccggactt gcgccagtta aataaataag
     6241 caaccagcga tttttcataa agtattttgc gacttttaaa tatagccgat ttttaaaatc
     6301 ttgctttgat tcttctggaa gactaatttt gtcataaagc ccgtcaatta aagcttctgg
     6361 gaatgagaag ttataatgaa tgccagataa taattggatt tttttaccgt agccttttgc
     6421 taaatgttcg cggtattttc tgtccgggct atcaggcgtt ttatattcag caattggaat
     6481 atcttcttcg gctggtaaaa tgggtggatt gctagacggc caaagtagtt cgttttctga
     6541 gcgcaacgaa acgatattat gaagattttc aagccattca tatacagagt caatcgagtc
     6601 cgttaccggg gtaatcattt caatctgact ttccgaaaaa tcggttttaa tatatgggtt
     6661 atcctctttt ggaccaaaaa tagcgggatg tggcgtaaga gccaattttc catcagaagt
     6721 tacgcgaata ttttcttttt ctaaaccaaa atgtccagaa aataaaagct tccggagctt
     6781 agggtcttct ttaaaagaat caagcatggt catatcaagt tttatcatgt tttcacctca
     6841 ggggttttaa ataagttcat atagggatat tttaccgcaa tatgtgaaat tagtataatg
     6901 attggtttgt aactttttat agcgaattgg tagaaaattt ttaaaaatgt agaaaaaata
     6961 ttccggagct tatataatga gtgaaagagg tggaataatg aaaattcgga acttaactaa
     7021 aaagatggac gataacttgg ttttgaagga tgtttcattt gatttaaaag caggggagat
     7081 tactgcatta attggccgca atggcgttgg gaaaacaact ctattttcaa cgatgacggg
     7141 aatttatttg cctgatgagg gcgatgtttt cttaggtgaa gagagtattt ttaagcaccc
     7201 ggaagtgaag caacagctgt ttttcttgga agataatatg aatcatttta atacatatag
     7261 tgtacagacg gttgttaaga tatatcgaca aatttatacg acttttgatg aggctttttt
     7321 taatgaatta atgcagcgat ttgaactgcc aatgaaggct aagttaatgt ctttttcaaa
     7381 gggacggaaa gccttatttt ttattatttt agctgtttca cttaatgttc gattcttgct
     7441 gctagatgaa ccgatggatg ggctagatat cattattaaa aagcagattt tagcaacgat
     7501 aaaggacacg gtgaaaaaac gaggaacaag tgtagtgatt gcgtctcatc gtttggaaga
     7561 actcgaggct attgcggatc gagtgattgt tctaaagggc gcgagcgtgg aactggatta
     7621 ttatttagaa gatatgcgga ccgatgcggt gaaaatacaa gttgcattta aaacgaaaaa
     7681 aatacctgat tttgtgaaaa ataacgcgca attattgtat cgtaatgggc ggatttacac
     7741 gcttctagtg actgaaaatg ctagcagttt tcttgccgaa ttgcgtttag aagaaccggt
     7801 tttgctagaa gaaatgtcga tctcgataga agacattttc acggtgcatt tagcaaatga
     7861 taaaatagat tattacgaga tttaaaacag acaggaggga caaggctaat aatgtttaat
     7921 cgaggtttat ggtaccgaga atggcgtaat atgagatgga tgcttttggg tgttgtgata
     7981 ctatttttct taggaattac tttgggacta atgtcagacg cagatagatg gaatagtcaa
     8041 aaagagtact acgaatcaag tgagttttta aagcaacaga aagaaaatcc tgaatttaaa
     8101 acttctgatg aggaaatgaa agctagtttg acagtggcgt atttagcggt tccaatgtat
     8161 acaaattttg ttcaagatga gtttgtagat tacatgccat ttatgtttta ttttcaagta
     8221 gaaatgtttt ttacattgat taaggtgagt gtttttattt taggggtttt ggcagttatt
     8281 tttgagcgct acacaagagc gaatcgtttt acggcatcat taccatataa acggacgcac
     8341 atagttgggg ttaaaatgat gatgggaata gcgaccattg ggctgagtta tcttatctcg
     8401 atgggaattg ggttgacata cttcatgtcg catgttccaa aagaatatat tcaattagat
     8461 gcaccaaaat tttgggtgga tatagttggt ggattattta cttatttact tatattttta
     8521 gtagctattt taatcggttt attgataggt tcgcctattg ctgcggcttt tgtggcattt
     8581 ggtgtgatgt tactgccgag cgtgttaaat cctactttag ataacatgta taactttatt
     8641 tggccgcatg gcggagataa agggatgtct aaactgctac gatttgagga ttatgtgaac
     8701 atattttctc cgttttcgtt tgagtccgcc tcgtttgggg ctgtgatttt tagcgtaata
     8761 ttaagtgtac tcatggtggt tgctatttta atcttatata agaagcagca tattgaacga
     8821 agtggttatt tatttgcatt ttcttgggtt aaatggccgt ttttagtgtt gttttcgtta
     8881 tttgttggga tgactgcagc taatttggca gtaacagata cagagcttgg tttcgttggc
     8941 tatttagctt ggggaattgg cgcgacgatt ggtagtttta ttttagcact ctacatttta
     9001 aacaaaatgc gcgggctttt tcaattgtct aaaacgaatt aaaaaaatag cttttttata
     9061 gcaggtaagt ccggtataat agaggataga atgagcgagg gaggatttag cattgacgac
     9121 agaaacagaa acgattaaac cgcagttagc tgaattgaaa gctaatttaa cgaagcggaa
     9181 cttgcaatat gtgatggaag tagaaaaaca tttgcgagaa actcattaca gcgcagaaca
     9241 acaagagatt attgtttatg aaatgagcga aaagatttta gccgaacaga aaaaaggcat
     9301 aacagcgaga aaattattta atttaacacc aacagaatat gttgtttctt tagatgtgaa
     9361 agctgctaca gtggagcaaa atacggacaa atggtggcta gtacttgacg gtggactcct
     9421 tgtacttgga gcgatgatgc tgatttccgg aattagtgct tatttccaaa aaaacgcgca
     9481 gactttagga attatcgtgt tattaatcac tgcagttgtc ggtggtttcg caatgcttat
     9541 cttgcgtaaa tacgcttcaa acatgcgtgc aggccaaaaa ggtggaacga taaaatactt
     9601 actagtagca gttggagtca ttgcagtgtg gatgtttgta atgacgattg tacaagtaac
     9661 tattcctcca aatatcaatg tagcgttaag tccgattgtt aacacagttg gtggtgcaat
     9721 tattattgcc ctacgtttct atgtgaagaa aaagaaaaat attccatcct tataataaga
     9781 tggacacgga caggtgacct agattgcata atgcgagttg ggtcgcctgt ttttatttcc
     9841 cgggaaatac tgatacagat gaggtgaata aacttatgtt ttcgtatgaa gtgattagac
     9901 aatttacaga gacagagcat catttatacc ggtacataat ggacaatcgg gacaaagtta
     9961 tgtttatgag agtgcgcgag ctttcggaag tgacgcacgt ctcgccggct tcgattgttc
    10021 gatttacaag aaaattaggc tgtgaaggct tttcggaatt taaagtgaag ctaaaacaag
    10081 aagcgactcg tgaggtaaag aaaaaaaccg cggatacagt ggaagtttta gaggaattct
    10141 ttgaacgaac aatgaaccgt gattatgatc atgtgttaga cgcggcggcg gagatcatca
    10201 atgaagccga tttagtcgtg tttttcggaa ttgggacttc agggattttg gcagaatatg
    10261 gcagtcgttt tttctccaat atgaagaagc ggacttttta tattaaagat ccattttatc
    10321 ctaacccggg agagcaattt aaaaataaag cagtgatgat tatcctttct gtgtcaggcg
    10381 agacggatca ggtgcttgag caggcgcaaa atatgcagca gtatggcagt cggattatta
    10441 gtataaccaa tacgagccac aatacgctcg cgggcttgtc tgatgttaat attccgtatt
    10501 atgtaactca agaaatggtt gataagacga atattacgac gcaaatcccg gtactttttt
    10561 tactggaagc gatggcgaag aaaaattata atcaagagca agaagaataa taaaaagcgt
    10621 gtaggttttc atgacctaca cgcttttctt tagcttattt ttttatatac atgcacgaac
    10681 tcagtgacaa cttctcttaa agtttcggtt gtgatgagta agtcttccgc atggattaaa
    10741 agtaattgga tttccacttt ttcaccggaa gcttcttttt ggattagctt atgatgctcg
    10801 tggtgcccat ttgcaagagt ttcgctacct tcttgtagtt ttgcttctgc ttcctcgaaa
    10861 ttgccttcac gagccgcacg aagcccttct aagtaactgc ttctcgcaga accaacttgg
    10921 ctaatcatgc caaaaattac tgtttccatt tcattcatgt ctattttcct cctgtaaaaa
    10981 gtgatacact gcgccgagta ggccagcttg gtttttatgt gttgctgttt cgataattgt
    11041 gtcacgcagc ccaaagctct ccatatgatg ctttagctcc gtgataaaag tagggcgact
    11101 tgtaattcca ccaccaataa agatatgcgt tggatcgaac aagtaaatta aattataaag
    11161 ccccgtacaa attccagtat aaaactcagt aataagacgt tctgagacgg cgtcgtgtcc
    11221 atcatactta gcaaaaattt cttcgccagt aatctcttcc aaagggcgcc cagtaagttc
    11281 cgcgtattgt ctgcgaagaa caagcattgt ggtagtctca tttagcgtat atttgccagg
    11341 acggaaagcc cctggacgtt cactaaacat ataaccaaac tcgccagccc ggaaacgacc
    11401 accacgaact aatgcgccat tagaaaaaat accgccgcca atcccagttc cgattgttag
    11461 acaaagaaaa tcatccaaat tttgtccttt accaagccat ttttcggcaa gaagggcgca
    11521 attggcgtca ttttcaatgg caacaggaat tccggtttcc gcttcaagcc attctttcaa
    11581 attaaagtta tcaaatctac ggatagcgcc gcccattgta ataagtccgg tttttgggtt
    11641 cacatagcca ggcgcgctga ctgcaattcc tgtcacgtcc gtattttcag caagaaatag
    11701 cttcatttct gctaaaatct ggtcgccatc actagcgatt atttcggctg attttgttag
    11761 tataatttca ccatgcggca aaacgacccc cattttaagg gccgttccac cgatatcaaa
    11821 agctgcaatt ttcattttgt cacatcctat tgttccgttg aggctgttgc atttttgtcc
    11881 attgcagcat cactcgcggc aattttgtta gatacaagta cgaatggtag ataaatgact
    11941 gtcgcgacgg ctagacagag caagccgacc agaagcgcga gccagtttcc tcctgtacca
    12001 agaaatggaa tcagtggtcc tggagttgtc caaggcactt gataggcgac aggtggaata
    12061 agttttgttg agataaagaa gtaaccaatt aatgtattga ttgctggtgt aatgatgaaa
    12121 ggaataacca taattgggtt taatacgatt ggtaaaccga aaataactgg ttcattgatg
    12181 ttgaaaatcc ctggtgcaag agaaagtttc gcgatatcgc ggtagtctgc acgacgagaa
    12241 gcgataaaga tagcaatcag taaacctaga gtcataccag atccgccgta gtttgcaaat
    12301 ccgtcattta ggccagccca tgttgctggg tatggagctc cccaagcaga accgtgctgt
    12361 gctacgtaag ataagttgtc taagtttggt tcagtgaaga tggtgtcacg aatagccgca
    12421 acagtgttag gcccgtgaat accaagaacc caaagtaagt tagaaacaag cccgatgata
    12481 attacagaga atacgttagt tcccatgtct ttaagtggcg cttgaataac tgtgtaaaca
    12541 aggtcgttta aaccttctgg agcgattaaa gtgattaagt agttaatgac agagaaaaga
    12601 atagtgatga tgataactgg aattaatact ttaaaagaac gagcaactgc tggtggtact
    12661 tggtcaggca ttttgatcat taaacgaggg gatctagcta gacggctaaa tacttcccca
    12721 gtaataatcg ctacaataat agcaacgaaa agaccttgtg ctcctaagaa tttgattgtc
    12781 atgtaagatg cattgtcaac tactgtgtaa ggtgtataca cgataaagaa tgcacctatc
    12841 gaggtaagtc cacagagcaa atcatcctgt ttaaagaaga tggcgagatt ccgtgcgact
    12901 aagaatacga tcagaatggc cataatattg gtcgaacctt gcattaccgg cgaaaataca
    12961 gcctgtgcat cggctaaatt agggaaaatt ttccctagga ataagatttt tgcaataaag
    13021 ccatctggtg ataatactgc gaagttaatc aaagtgataa ttgaaccagc cataattaat
    13081 gggaaaacta aaataaatgc atcacgaatt gctgcaatat ggcgctgcga gttcaattta
    13141 ttcgcaactg gtactaaaac acgttccatg ccgtgttcaa attttgacat tatactcatt
    13201 ttaaaacctc cctattttga atgaatctcc cttaaccaat ctccgcgaaa gctttttcaa
    13261 gaacggcttt cccgtttaac ataccataat ctttcatatc gataacaata acaggaatgc
    13321 gaccctgtac gagttcatct acttgcggtt tttggtaacg gacttgaggt ccaagcatca
    13381 cgatatccat tttgtccaca acgctgctag cttctgatac tggtaatgct tcgatttcaa
    13441 tttcttcccc aatagaggtt gcgtgcgctt tcattttagt aacgagtaag cttgtcgaca
    13501 ttccggccgc acatacaagt aatatttttt tcattaaaat ttccctccca aaatggttga
    13561 agcagagaga acaaggctta tttgccctgt tcttctacta aattagctcc gtttgcttcg
    13621 atggtctttt tataccagta aaaactatct tttttatagc gttttaattc tttttcatcg
    13681 ttttcgtcgc ggtctacata tacgaaaccg taacgttttt ggtagccgtt taaccagctt
    13741 agtaaatctg tgaagctcca agtgcagtaa ccgagcatct ctacgccgtc cgtgattgct
    13801 tcttggattg ctagagcatg cgcgcgaatg tattcaattc ggtactcatc atggatttta
    13861 tggtcttccg tcaagctatc atactcacca agaccatttt ctgtaatcat gattggtaat
    13921 ttatagcggt tagtaattct acgtaagcca atgcgcaagc cagttggatc aatatcccag
    13981 tcccaattcg ttttctctaa gtatggatta ttggtgtttt tgtataaccc cggtacacca
    14041 gtttcctcgg aagtgccttt ttcgccagtt gtattcattt tcccagaacc aacgccgtct
    14101 ttcccattaa atgcatgagt cattgagcgg taatagttaa ctcccatgaa atcaggtttt
    14161 ccttttttca gaagctccgt atcgcctggt aagatttccg gtgcaagacc gtgctcttct
    14221 agccagttcc aagtagcagt cggatattca ccccatgtgt aaacatccat ccagaaatgg
    14281 gcattgaatt cttcggagtt ttcagaagct aatacatttg ctgggttagc atcgatggag
    14341 taacttggtc cataagcaaa acttggtcca atttttccgg atgtacctag ctcgcggaat
    14401 ttagcaattg cagaagcatt cgccaagttc gcattgtgat ttgccgcaaa catacgcttg
    14461 tcgtcagaaa cgccaggtgg gtgatacgct aatttgtaac cgtgtgagat aaatacgttc
    14521 tgttcattaa gtgttaccca atatttaact cggccgttaa agcgttcgaa tagaagggca
    14581 gcgtagttag tgaaatcttc tacgactttt cgcgactccc atccaccata ttcgtcttga
    14641 agcccttgcg gaatatccca gtgataaagt gtaacgactg gctcaattcc ataagaaaga
    14701 agttcatcaa tcaaattatc atagaattta agtcctgctt cgttaacttc cccgttacca
    14761 tgcgggataa cgcgactcca tgcgacagag aaacgatatg cttttaggcc ctgttcagcc
    14821 attagtgcga catcttcttt ataacgatgg taattatcca ccgctacatc tccgtttgtt
    14881 tctttgaatg ttgttccagg aatacgaaca aattcatccc atacagatgg tcctttgcca
    14941 tcctcatccc aggcaccttc tacttggtac gctgcagaag ctgatcccca tagaaaatct
    15001 tttgggaaag gtttcaactt attatgttcc attatggcac ctccaaaaat tatgtgcgat
    15061 tagtctgttt tagttttgct tgccttatta atgtaaacgg tttcgactaa ttggtaaata
    15121 gattttggtg ctttgggttc gtgtttcata tcaatggtat aagtttctga gctgaaacgc
    15181 tgtgtttcgt gcatgtgatt ggaagaacaa ttgacatttg gggaagtatc ccttattcta
    15241 tatgtattaa tgaaaagagg tgagatgaca tgtttctttt gaatgcgcga actagtatag
    15301 ctaaattttt gtatattgtc cgtgcaattt tttccggtat tgcagttaca ttggcgaagt
    15361 ctgcccaaaa aactgtataa ctagaaaaaa tgagagaagc atggagtcac gcaatcggtt
    15421 tgtatagtgc taaattagta ttatacttat aattggcgtc gggcgcttgt ctgacgcttt
    15481 ttttgttgtc tgaaaaattg tttcacgtga aacaatttgc catgcttcct tggataaatg
    15541 gaggataaaa tgacaatagt agcaatgaat gatgtagtta aaagttttac cggagatatt
    15601 attttagaga aagtatcact tcaattagaa gaaggtgagc gcgtcggttt aattggtcgt
    15661 aatggcgaag ggaaaagtac tattttgaag attttaaaag gaactgaggg cgttgatagc
    15721 gggattgtga cgagcaaaaa gggcgcgaaa attgggcttt tagagcaatt atcgacggtg
    15781 gatcccaata taatagtaga acaatattta cgaactagtt ttggtgagtt agaggagctg
    15841 gaaaaagaat tacgagcatt agaaggagaa atggcaacaa attccagcga aaaattaatg
    15901 aaccgctacg gagataaaat ggctttattt ggcgagcttg gcggctatga gatggatgcc
    15961 aatttgaata aagtggtgaa tgggcttggt attggattgc tactgtcgca acgatgggga
    16021 gacttgagtg gtggtgagaa gacgaaggct gcattagcgc atttattatt acagaaaaca
    16081 gatttattac tcttagatga accgacgaac catttggatt tgatggcggt agaatggctg
    16141 accgcgtttt tacaacatta ttcgggaacc gtattagttg tatctcatga tcgctacttt
    16201 ttagatgaag tagtcgggaa aatggtggag cttgagaacc gcgaattaat cgtttatcat
    16261 acgaattttt ctggatattt gaaagaacga gaagaacggc tattgcggga attccaagat
    16321 tacaaagacc aacaaaagaa aatcaaaaag atgcagcaag ccatcaaacg attgcgccag
    16381 tgggcaatgc aagccaatcc gccaaatgat gccatgttcc gaagggcgaa aaacatggaa
    16441 cgcgcattag aacggatgga aaaagtaaag cgtccagtgt taacgcaaaa acaaatgcaa
    16501 ttacaattcg atgaagctgg tcgaagtgga caagaagttg tggttatgga aaacttaagc
    16561 aagtcattta gcgaaaaagc aatcgtacaa gatgtttctt tgcaaattag gcaaggagaa
    16621 cgagtagcga ttatcggtga aaacggcgcc ggcaaatcta ctttgcttaa aataatggaa
    16681 gggaaagttg ttcctgatgt tggcatgatt aaggttggtg caagtgtgaa aatcgcgtcg
    16741 ctttctcagc aaatggaaga gctgaatgaa aagctgactg tactggatgc atttcgggat
    16801 aaggttgctg tgacagaagg agaagcacga caaatgctag caggcttcat gttttatgga
    16861 gagatggttt tccgaaaagt agggaacatt agcggcggag aacgtatgcg acttaggtta
    16921 gcgcaattta ttaatatgcc agtgaatacg ctgatacttg atgagccgac taaccattta
    16981 gatatcgcct cgcgtgaaat tttagaagaa gcaattcgag catttagcgg cacaattatc
    17041 actgtatcgc atgatcgcta ttttattgat cagctatgtt ctaaagtaat ttggctggag
    17101 aataaacaat taaccgttta tgaaggtaat tacagttatg caactagtaa gcgaagataa
    17161 tcgacttgct ggaaatcact ttcaaaataa attagaatga agaaaagagg tgatggtatg
    17221 gagataacag ttgtaaaagg tgatattacg gaacaagatg tagatgtcat tgtaaatgct
    17281 gctaaccccg gacttttagg tggcggcgga gtggatggcg ctatccatca agcggcgggt
    17341 ccggatttat taaaagaatg tcaagaggtt attaatcgca ttgggacttg tcctgcgggt
    17401 gaggcggtca ttacgtctgc cggcgattta caagcaagtt acattattca tgctgtaggt
    17461 ccgatttgga aagacggaga gcatcaagaa gcgaataaac tggcatcttg ttattggaaa
    17521 gcgctagatt tagcggctgg aaaagaatta acttcgattg catttcctaa tatttctacg
    17581 ggtgtgtatg gttttcctaa aaaactagca gctgaggtag cgctttatac cgttcgcaaa
    17641 tgggcggaag aagagtatga cacaagtatt gaagaaatac gctttgtttg tttcgatgaa
    17701 gaaaatttga agttatacaa caaattaata aacagtgaag tcgtttaaga taacaatctt
    17761 a
//
LOCUS       DASDXX010000039        17607 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.039, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000039 DASDXX010000000
VERSION     DASDXX010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17607
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.039"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..176
                     /locus_tag="U0280_001044"
     CDS             <1..176
                     /locus_tag="U0280_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HEM2270998.1"
                     /translation="AGTYASNQRIDEELAIFNKLASKLNCFVLDVTNKAIEETANEIL
                     IHIGEIVDENLEL"
     gene            364..804
                     /locus_tag="U0280_001045"
     CDS             364..804
                     /locus_tag="U0280_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HEM2270999.1"
                     /translation="MPKILVDADACPVKAEIKQVAEHFQLDVIFVASFNHYSVNTNGE
                     NWIFVDTGKESADMRMMNLAKKGDIIVTQDIGLASILLAKGTFVFSNRGELYREEEMS
                     LMLDIRYRHAKDRQQGKYSKGPKAMSDQDRSLFKDRLTTFLQNK"
     gene            824..2704
                     /locus_tag="U0280_001046"
     CDS             824..2704
                     /locus_tag="U0280_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM2271000.1"
                     /translation="MARIPEEVIDQVRNQADIVDIIGNYVQLKKQGRNYSGLCPFHGE
                     KTPSFSVSPEKQMFHCFGCGKGGNVFSFLMEHDGLNFVESVKKVADMSHLDVAIKLPE
                     ERDTSNLPKETSETAKMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTF
                     QIGFAPNHHATITAFLEKRGMDLQLAGRAGLLSERDDGQMVDRFRNRIMFPITNDRGQ
                     IIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQAIRKQEEITLMEGFMDVI
                     SAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERN
                     RLDVFVLQLPAGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQ
                     IGYIDDCLREIAKLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASY
                     NEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQL
                     LGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVISPDEQ
                     GKTQFEDYIRSLKRFKLEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLNSGQ
                     LD"
     gene            2799..3923
                     /gene="rpoD"
                     /locus_tag="U0280_001047"
     CDS             2799..3923
                     /gene="rpoD"
                     /locus_tag="U0280_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEM2271001.1"
                     /translation="MSDKTKNTKPVAELSVEQVKEALIEEGKKKGILTYAKIAARLAP
                     FTLDSDQMDEYLEHVGEAGIEVSDDADDEDPDETELVKEETESFDLTDMSVPPGVKIN
                     DPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRG
                     MLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHM
                     VETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEE
                     DDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT
                     LEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE"
     gene            3991..4695
                     /locus_tag="U0280_001048"
     CDS             3991..4695
                     /locus_tag="U0280_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HEM2271002.1"
                     /translation="MNEEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTAS
                     FAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLI
                     RTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLA
                     PSEKPVTWTKQEIFFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAK
                     IRELEHKIALVEDVLK"
     gene            4692..5813
                     /locus_tag="U0280_001049"
     CDS             4692..5813
                     /locus_tag="U0280_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEM2271003.1"
                     /translation="MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMF
                     TLDVLEEVVDEAIEKKVDLIIAHHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAH
                     TNLDIAQGGVNDILADLLHLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGA
                     GQIGTEYTECTFHTTGIGSFKPGANANPTIGEKEALTSVPEVKIEAIFPQYLTHTITK
                     AVKIAHPYEEPAIDVYTLEMQTYKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFI
                     GDLKTTVHKVAIIGGDGNKFIHQAKATGADVFITGDVYYHTGHDLLAINLPTIDAGHN
                     IEKVMKGYLKNKMEEQAKILDYEAEFIVSEVNTDPFQFC"
     gene            complement(5859..6854)
                     /locus_tag="U0280_001050"
     CDS             complement(5859..6854)
                     /locus_tag="U0280_001050"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEM2271004.1"
                     /translation="MEIIKISPRGYCYGVIDAMVIAKNASLDPNLPRPIHILGMIVHN
                     KHVTDAFESIGIYTVDGANREEILDKITTGTVIFTAHGVSPSVKAKAAAKGLTTIDAS
                     CPDVLHTYNLILEKQAAGYEIIYIGKKGHPEPEGAYGTAPDVVHLVETKADIDALSLL
                     SDNIFVTNQTTMSKWDVADLMDYIKEKFPKAIQHQEICMATQVRQEAVAVQAKGADLT
                     IVVGDPRSNNTARLAQVSIEKAGTKAYRIADITELDIEWIKDAKKVAVTAGASTPTQL
                     VREVLLFLEQFDAADKTTWKRAHNKDFERILPKMKNKYMAEKRRQRLAHLKNGGS"
     gene            7000..8307
                     /gene="cshB"
                     /locus_tag="U0280_001051"
     CDS             7000..8307
                     /gene="cshB"
                     /locus_tag="U0280_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD-box ATP-dependent RNA helicase CshB"
                     /protein_id="HEM2271005.1"
                     /translation="MTKKSRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGES
                     IIGQSQTGTGKTHTFILPIINNVNPEKEAVQAVITAPSRELATQIYNEIRKVTKYSEK
                     EIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADM
                     TLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASK
                     TVEHRIMATRSRNKLDLLKNVLVGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIH
                     GDVNPRERKRTMKQIENLDYQYVVATDLAARGIDIQGISHVVNYELPDDLDFYIHRTG
                     RTGRAGHSGIALTLFEPADEDRLNQLEKMGIEFKHVDWKNKEFVTLEDRNRRAKREAK
                     RETADPREIGMRKKAKQKGKPNYKKKINYKMNEIKRRERRKKR"
     gene            8323..9216
                     /locus_tag="U0280_001052"
     CDS             8323..9216
                     /locus_tag="U0280_001052"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEM2271006.1"
                     /translation="MLRLGSHVSMSGKKMLLGASEEAASYGSNTFMIYTGAPQNTRRK
                     PIEELNIEAGLEHMKAHDMADIVVHAPYIINIGNSVKPETFELGVNFLQSEIERTRAL
                     GAKQIVLHPGAHVGEGADKGIKQIIQGLNEALIHDQDVQIALETMAGKGSECGRTFEE
                     IAQIIDGVTHNELLSVTFDTCHTHDAGYDIVNDFDGVLNEFDKIIGVDRLKVLHINDS
                     KNERGAHKDRHANIGFGHIGFDALHYIVHHPQLADVPKILETPYVGEDKASKKAPYKW
                     EIAMLRNGEFDPDLLNKIQNS"
     gene            9233..10159
                     /locus_tag="U0280_001053"
     CDS             9233..10159
                     /locus_tag="U0280_001053"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HEM2271007.1"
                     /translation="MTKTLVFGHKNPDTDTICSAISYAELKKAQGADIEAVRLGELNS
                     ETAFVLDYFQVTAPRLVQTVANEVSEVALVDHNERQQSVDDIDDVTVTAVVDHHRIAN
                     FETSDPLYYRAEPVGCTTTILLKMFRENEVEVSKTVAGLMLSAIISDTLLFQSPTCTQ
                     EDKVAAQKLAQIADVDIQSYGMEMLKAGADVSKKTVAELLLDAKEFNMNDNKVEIAQI
                     NVVDVNDVLSRRAEVEALMTQNIVDKGLDLYLFVITNILTNDSVGIAIGSKTAVVEEA
                     YGVKFVENQAPLKGVVSRKKQVVPILTDTFAK"
     gene            10304..11077
                     /gene="zurA"
                     /locus_tag="U0280_001054"
     CDS             10304..11077
                     /gene="zurA"
                     /locus_tag="U0280_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZurA"
                     /protein_id="HEM2271008.1"
                     /translation="MNKIIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKS
                     TMLKLILGVLKKQQGSISLFGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASG
                     LTKKKGLFKTLNNKDKEDIDYALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPE
                     LLILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVNTYVNHVISINKRI
                     IFDGSAHEYQHYLADRELEILAEQRRREDACLDCDASPV"
     gene            11052..11930
                     /gene="zurM"
                     /locus_tag="U0280_001055"
     CDS             11052..11930
                     /gene="zurM"
                     /locus_tag="U0280_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease ZurM"
                     /protein_id="HEM2271009.1"
                     /translation="MIATLLQYDFIRNTFIVGLVIGIVAPLLGSFIVVRKLSLMADAL
                     SHVTLGGIAVSLFLSKTYLPLAALNPLYLGFGFSVVGSLLMEKLRNVYKHFEELAIPI
                     IMSAGMGFSVIFISLANGFNTDLFSYLFGSVSAVSRTDMITIVVTAIIVFIVILSLYK
                     ELFLLSFDEEYAKVSGLKAKVFDVIFMVLVALVIASSMRIVGILLVSSLMTLPVAAAI
                     RIAKGFKQTILLSILFGEIAVIGGLFTAYYLNLAPGGAIVIISVLLLIVTILYQKIRQ
                     KILISKRGEENGTYSN"
     gene            11911..12336
                     /gene="zurR"
                     /locus_tag="U0280_001056"
     CDS             11911..12336
                     /gene="zurR"
                     /locus_tag="U0280_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ZurR"
                     /protein_id="HEM2271010.1"
                     /translation="MGLTATEALMKMKEKGYKHTDKREFLINLLARKNKYLTAKDVLE
                     NMKDDFPGISFDTIYRNLSLFVELGIFEETDLSGERNFRLACTHEHHHHHFICMKCGK
                     TKEIMMCPMDFLTEALPGYQIDGHKFEVYGECPECLQAS"
     gene            12471..13355
                     /locus_tag="U0280_001057"
     CDS             12471..13355
                     /locus_tag="U0280_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM2271011.1"
                     /translation="MTKLKKVMISVIAATLLLLAGCGSSAVVKTDAGSVTQDELYEAM
                     KTTYGNEVVQQLTFKKILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLSSNNLTKTSF
                     KENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDITVRHILVDDEATAKEIQTKLKN
                     GEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYG
                     YHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMIAALKKELKAANIDIKDSDLKD
                     AFADYTSTSSTSSTTTSN"
     gene            complement(13437..13763)
                     /locus_tag="U0280_001058"
     CDS             complement(13437..13763)
                     /locus_tag="U0280_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEM2271012.1"
                     /translation="MALSSYTLFVIVGCGLVTFIPRVLPFIFVRKLQLPDVVIRYLSY
                     VPLCILTALFVQSLLITRENGFPGINIENLLASLPTILTAILTKNLMWIVIIGIISMA
                     MIRLFA"
     gene            complement(13754..14461)
                     /locus_tag="U0280_001059"
     CDS             complement(13754..14461)
                     /locus_tag="U0280_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEM2271013.1"
                     /translation="MEKENELSFYDGVRACLPTVLGYAGIGIAAGVVGKASHLSLLEV
                     TLLAIIVYAGAAQFIISGLLLLQSPISAIIFTTFLINSRHFLMSMAEAPHFKKYSLWN
                     NIGIGALLTDETFGVSMNQIGNKKPVSAKWMHGINVTAYLAWIVACIVGAFIGNWLPN
                     PEQFGLDFALSAMFIGLLYLQVVSDKSKKISTSLFVMILVAVFLILFMRVMTPELAIL
                     TATLLGCLMGVIIERWR"
     gene            complement(14497..15603)
                     /gene="ispG"
                     /locus_tag="U0280_001060"
                     /gene_synonym="gcpE"
     CDS             complement(14497..15603)
                     /gene="ispG"
                     /locus_tag="U0280_001060"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEM2271014.1"
                     /translation="MNERIFREKTRPVQVGNLTIGGSEELTIQSMTTTKTHDVEATVA
                     EIHRLEEVGCQIVRVACPDERAANALSAIKKRIHIPLVADIHFDYRLALKAIDAGVDK
                     IRINPGNIGRRDRVEKVVNASKAKNIPIRIGVNAGSLEKKIIQKYGYPTAEGMVESAL
                     AHIKILEDLDFYDIIVSLKASDVNLAIEAYDKASRAFNYPLHLGITESGTQFAGGIKS
                     AAGLGAILSLGIGNTLRVSLSADPVEEIKVAREVLKSFGLSSNAAMLISCPTCGRIEI
                     DLIRIANEVENYIATIKAPIKVAVLGCAVNGPGEAREADIGIAGSNGEGLLFRHGKII
                     RKVPEAIMVEELKKEIDILAEEYFEKKTDLESLR"
     gene            complement(15715..16515)
                     /locus_tag="U0280_001061"
     CDS             complement(15715..16515)
                     /locus_tag="U0280_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HEM2271015.1"
                     /translation="MNIFKRFWKSLYSPADIASFRNDKIRKSIVYIIVLSFVTFLPLA
                     YFTNITTKNALKVGEETITNEIPDFKVTDGKLVLTDKNAKNIPISIDQDELHIYFDAS
                     GTLDKDDVDNKIASYDSAVAFLSDSIYITAAGVSQSVSYDTAGISDKSDLVHLYNSIE
                     SLAKYFIPIALLVLFIFTLGSVFFRVALYALFGFILSGFGRTGIAFRQNWMIASYSIT
                     LAAVFTMIMEALQIIVPFGMEINMVVSMIFVFLAIRSIPPSDPTILEK"
     gene            16817..17425
                     /locus_tag="U0280_001062"
     CDS             16817..17425
                     /locus_tag="U0280_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM2271016.1"
                     /translation="MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVA
                     GHPELASKSVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLK
                     AAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSDGKTPV
                     LGLDVWEHAYYLKFQNRRPEYIDTFWNVINWDEANKRFDAAK"
BASE COUNT         6003 a         3176 c         3353 g         5075 t
ORIGIN      
        1 gtgctggtac ttatgcaagt aatcaacgaa ttgatgaaga attagcgatt tttaataaac
       61 tagccagtaa attaaattgt ttcgtgttag acgtgactaa taaagccatt gaagagactg
      121 caaacgagat tttaatccat attggtgaaa ttgttgatga aaatttagaa ttataagaag
      181 gacttttact ttttatggcg aatatatata ttatacgggg aaaactgctt gtaaaaatta
      241 gttacttccc gtataatcta aattcgcgtg tgaaaaagcc aaatctacga ataatattaa
      301 aaaaacgggt taaaaactcg ttttttaact tgccttcata gattttaaga gaggatggaa
      361 tatgtgccaa aaattttagt tgatgccgat gcttgcccgg taaaagcaga aataaaacaa
      421 gtcgccgaac attttcagtt agacgttatt tttgtggctt cttttaacca ttactctgta
      481 aatacaaacg gagaaaattg gatttttgtg gatactggaa aagaatcagc ggatatgcga
      541 atgatgaatt tagccaaaaa aggcgatatt atcgtaacac aagatattgg cctagctagt
      601 attctacttg caaagggtac atttgtcttt tctaatcgcg gcgaacttta ccgagaagaa
      661 gaaatgtcat taatgttaga tattcgctat agacatgcca aggacaggca acaaggtaaa
      721 tatagcaaag gtccaaaagc aatgagcgat caagatcgtt ctcttttcaa agaccgattg
      781 acgacatttt tgcaaaataa gtaaatagga gttgactgtc aaaatggcgc ggattcctga
      841 agaagtaatt gatcaagtcc ggaatcaagc ggatatagtc gatattatcg gtaattatgt
      901 tcagttaaaa aaacaaggac gtaattattc tggcttatgt cctttccacg gtgaaaaaac
      961 gccatccttt tctgtctcac cagaaaaaca gatgttccat tgttttggtt gtggtaaggg
     1021 agggaatgtt ttttcttttc taatggagca tgacggactc aattttgttg aatcggtaaa
     1081 aaaagtggca gacatgagtc atttagatgt ggctatcaag ctccctgaag aacgagatac
     1141 aagtaatttg ccaaaagaaa cttctgaaac agcaaaaatg gtggaaatgc accagcttac
     1201 tgccaaactt taccattata ttttaatgga aactgaagaa ggtacagcag cattaactta
     1261 tttaaaagag cgtggtatgt ctgaacagat gatgaccact ttccaaattg gttttgcccc
     1321 taatcaccat gcaacaatta ctgcttttct agaaaaacgt ggcatggatt tacaattagc
     1381 tggcagggct ggacttttgt ccgaacgtga tgatgggcaa atggtggatc gttttcgtaa
     1441 tcggattatg tttccaatta cgaatgatcg tggacaaatt attgcctttt ctggccgctt
     1501 atttgatcgt gatgatggtc ctaagtattt aaatagccct gaaacacctg ttttcaataa
     1561 aagacgaata ttgtttcatt tttcagaagc aagacaagct attagaaaac aagaagaaat
     1621 tacgctcatg gaaggattta tggatgttat ttccgcagaa gaagcaggtg ttcaaaatgc
     1681 ggtagcttcg atggggacaa gcttaacgga agaacatgca gatttaatta aacggcttac
     1741 taaccgggcg attatttgtt atgacggtga cagagccgga attgaagcag cctataaggc
     1801 gggcacactt ctagttgaac ggaatcgttt agatgttttt gttttgcaac ttccagctgg
     1861 aaaagatccc gatgacttta ttcgagcaag tggtccagaa aaattcaaag aagtttataa
     1921 gcaacaacga atgacttgga cagcttttaa aattcattat ttacgtagag aacgtaattt
     1981 acagaatgag acagatcaaa ttggttatat tgatgattgt ttacgcgaaa ttgcgaaact
     2041 agatcaagcc gtcgaacgcg aattatactt aaaacaacta gcagatgaat ttgaattaac
     2101 gatagaaaca ttaaaacaac aactacagca atcactaaaa aatagtcaga aatcacgaca
     2161 aatggctagt tataatgaac caccaataga tgattctttt atgggaatga tgcctcaaga
     2221 agaaacagaa atgctatttt ctttcgagca accaacccaa aaactatctg cccatacaac
     2281 ctcagagcaa caactcatga aagcaatgat ggagagccga gataattttc ttttaattaa
     2341 gcaacttctt ggtgacacta cgttttatca tgataattac aaagcgcttt atacctatct
     2401 aattggttat tttgcagaag gtaatgatgc agatccaacg aaatttatgg atagtgttcc
     2461 tgatgctaca atgaaaggac ttatcagtag cctcgaaatg gttattagtc ccgacgaaca
     2521 agggaaaacc cagtttgaag actatattag aagtctaaag cggtttaaat tagaacaaaa
     2581 gaaaaaagaa cttgagcaag agctagcgac tttaaatcgt gaaaatgaca aagataacga
     2641 aattcgtgtc atgctcgaaa tcgtccaact caaccgtcag ttaaacagcg gccaattgga
     2701 ttaataacgt tttaaaaccg ctaaatgatg gtattattac ctaagagaag ccttttaata
     2761 aggttagcgg cattttggaa ggaggaatac aggcagttat gagtgataaa acaaaaaaca
     2821 caaaaccagt tgctgaacta agtgttgagc aagtaaaaga agccctgata gaagaaggta
     2881 agaaaaaggg gattttaact tatgcaaaaa tcgctgccag attagctcca ttcactttgg
     2941 attccgatca aatggatgag tatttagaac atgttggtga agcaggaatt gaagtttctg
     3001 acgatgcaga tgatgaggat ccggatgaaa cagaacttgt aaaagaagaa accgaatcct
     3061 ttgatttaac agatatgagt gtaccaccag gcgtaaaaat taatgaccct gttcgcatgt
     3121 atctgaaaga aattggtcga gtagacttac ttacagcgga tgaagaaatt gccttagcaa
     3181 aacgtatcga agctggcgac attgaagcca aaggacgtct tgcagaagcc aacctgcgcc
     3241 ttgttgtaag tattgcaaaa cgttatgttg gtcgcggtat gttattcctt gatttaattc
     3301 aagaaggtaa catgggacta atgaaagccg ttgagaaatt cgacttcaat aaaggattta
     3361 aattcagtac ctatgcaacg tggtggattc gtcaagcgat aacccgtgcg attgcggacc
     3421 aagctagaac aatccgtatt ccggtgcata tggttgaaac aatcaacaaa ctaatccgtg
     3481 tacaacgctc cttattacaa gatttaggcc gcgatccttc accagaagaa attggtgaag
     3541 aaatggactt accaactgaa aaagttcggg aaatccttaa aatcgcacaa gagccagttt
     3601 cccttgaaac accaattggt gaagaagacg attcacatct aggcgatttt atcgaagacc
     3661 aagatgcaac ttcaccatcc gatcacgcag catacgaatt actaaaagaa caattagaag
     3721 atgtgcttga tacattaact gaccgtgaag aaaatgtact tcgcttacgt tttggtctag
     3781 atgatggtcg tacgcgcact ttagaagaag ttggtcgtgt atttggtgta actcgtgaac
     3841 ggattcgtca aattgaagcc aaagctttac gtaaattacg tcatccgagc cgtagcaaac
     3901 aactaaaaga cttcctggaa taaagcacaa ccgggcagga ggacaaaccg ttctcctgcc
     3961 tttttaatga aaatgaaagt agggaaccaa atgaacgaag agcaattatc gaagcgactc
     4021 gaaaaagtgg cttcttacat aacaaaaaat gaacgaatcg cagacatcgg aagcgatcat
     4081 gcttatttac cttgttttgc agttaaaaat caaacggctt cgttcgctat tgctggcgaa
     4141 gtagttgatg gaccttttca atctgcacaa aaacaagttc gttcttctgg cttaacagaa
     4201 caaattgacg ttagaaaagg gaacggttta gctgttatcg aaaaaaagga tgcgattgat
     4261 acaattgtga ttgcaggcat gggtggcacg ttgatacgta ctattttaga ggaaggtgca
     4321 gcaaaattag ccggtgtaac caaactaatt ttacaaccta atattgcagc ctggcaatta
     4381 agagagtggt ccgaacaaaa caattggctt attacttctg aagcaatttt acgcgaagat
     4441 aataaagttt atgaaatcat ggtgttagct ccgtctgaaa aaccagttac ttggactaag
     4501 caagaaatat ttttcggacc atgcttatta aaagaacaaa gcgccatttt caaaagcaag
     4561 tggcgccatg aagcaaatac atggcaaaat attattcaga ctatttctaa caaccaacca
     4621 gtttcaacag aaaaccaagc gaaaattcgt gaattagaac ataaaatcgc attagtagag
     4681 gatgtgctaa aatgaaagtc gcaaatggct atgaatacac agcaataatg gaaaaaatcg
     4741 cacccaaaaa acttgcaatg gaaggcgatc ctattggttt gcaagtagga gatttatcga
     4801 gaaaagtaag aaaaatcatg tttaccttag atgtattgga agaagttgtt gatgaagcta
     4861 ttgagaaaaa agttgattta attattgctc accatccgtt tctatatcgg ccaacgcaac
     4921 atatcgatac gacaactaaa caaggaaaaa tgattaaaaa attaatcaaa catgatatta
     4981 ctgtatttgc cgcacacaca aacctagata ttgctcaagg tggtgtaaac gatattttag
     5041 cagatttact ccatttacaa gaaacaacga tgattgagga aacctattca gaaccatatt
     5101 gcaaaattgc tgtttatgtt ccagagaatg aattagaaag cattcgttta gctcttgtaa
     5161 ataatggtgc cggacaaata gggacagaat atacagaatg cacattccac acgaccggga
     5221 ttggttcttt caaaccagga gcaaacgcta acccaactat cggcgaaaaa gaagcactga
     5281 cttctgttcc tgaagttaaa atagaagcta tattcccaca gtatttaacc catactatca
     5341 ctaaagcagt taaaattgct catccatatg aagaacctgc gattgatgta tatacgcttg
     5401 aaatgcagac ttataaagaa ggattaggtc gcgttggaat gcttccaaaa aaactcggca
     5461 tggtttcatt tattgataaa ttaaaaactg ctttcgctat tgataatgtc cgttttattg
     5521 gggatttaaa aacaacagtc cataaagtag caatcattgg tggcgatgga aataaattta
     5581 tccatcaagc aaaagccact ggtgcagatg tttttattac cggtgatgtt tattatcaca
     5641 cgggacatga tttattagct attaatcttc caactattga tgctggccat aatatcgaaa
     5701 aagtgatgaa aggctatctt aaaaataaaa tggaagaaca agcaaaaatt ttggattatg
     5761 aagcagaatt tattgtatca gaagtaaata cagatccatt ccaattttgt tgataaaaaa
     5821 accgagtaac tcccttaaat aaaggagttg ctcggttttt agcttccgcc attttttaag
     5881 tgagctagcc gttgacgtct tttttcagcc atgtacttat tcttcatttt gggaagaata
     5941 cgctcaaagt ccttattatg cgcacgtttc caagtagttt tatctgccgc atcaaactgc
     6001 tccaaaaaca atagcacttc acgaacaagt tgtgttggcg tacttgctcc ggctgtaact
     6061 gctacttttt ttgcgtcttt gatccactct atatctaatt ccgtaatatc ggcaattcgg
     6121 tacgcctttg tgccagcttt ctctatcgaa acttgggcta aacgagcagt attattactt
     6181 ctaggatcgc cgacaacaat agttagatca gcacctttgg cttgtactgc aacagcttct
     6241 tgccgcactt gagtggccat acatatttct tgatgttgaa tagctttcgg gaatttttct
     6301 tttatataat ccattaaatc agcgacatcc catttgctca tcgttgtttg gttcgtcaca
     6361 aaaatgttat cggaaagtaa tgaaagagca tcaatgtctg cttttgtttc tactaggtga
     6421 acaacatcag gcgctgttcc gtatgcgcct tctggttcag gatgtccttt ttttcctata
     6481 taaataattt catagccagc cgcttgtttt tctaaaatta aattataggt atgaagtaca
     6541 tctgggcagg atgcgtcgat tgtcgttaag ccttttgctg ctgccttcgc tttgacagaa
     6601 ggagagacac catgtgcggt aaatataacc gttccagtgg ttattttatc taaaatttct
     6661 tctcgattag cgccatctac tgtataaata ccaatggatt caaatgcatc agtaacatgt
     6721 ttattatgaa caatcatacc taaaatatga attggtcgag gcaagttcgg atcaagtgat
     6781 gcatttttag caatcaccat cgcatcgatg actccgtagc aataaccacg aggagatatt
     6841 ttgataattt ccattcgaaa acatcctcat ttctgtttta gattctttat ttagtataat
     6901 agacttagcc tgttttgaca aagttgtctt aacacgcgca cgaatgtcca attatgtgct
     6961 ataatggcta ctaggtatag aacggagtgg aaatatttta tgacgaagaa atcaaggttt
     7021 gaccaatttg gctttcaacc ttttattgga cttgcaatag ataaattagg attctatgag
     7081 ccaacagaag tacaacagaa gctaattcca ggcattttaa aaggggaaag tatcattggc
     7141 caatctcaaa caggtacagg gaaaacccat acttttattt tgccaattat taacaatgtg
     7201 aatcctgaaa aagaggcagt acaagcagtt attacggcac caagtcgtga gcttgctact
     7261 caaatttata atgaaattcg caaagtaacc aaatacagtg aaaaagaaat cgctgtacaa
     7321 cttgttattg gtggcacaga caaacaacgt gcgattgata aactgaaaaa gcaaccacaa
     7381 atcattgtcg gaacgcctgg tcgtatcaat gacttaattc gtgagcaagc gttatttgtt
     7441 catacagcga aaacgctcgt tattgacgaa gcagatatga cacttgatat gggcttctta
     7501 aacgatgtcg accatattgc tggaaaaatg ccggctaatt tacaaatgct tgttttttcc
     7561 gctacaattc cgcaaaaatt aaaaccattt ttaagcaaat atatggaaaa tccacgttat
     7621 gagcatattc agccaaaagt ggctgcttca aaaacagtgg aacatcgcat tatggccact
     7681 cgtagccgta ataaacttga tttacttaaa aatgttttag ttggttcaca gccttattta
     7741 gcgattgttt ttacaaatac aaaaacaaca gctgatgaag tagcaaacgg tttaatcgaa
     7801 cgtgggctaa aagtagcgaa aatccatggt gatgtaaacc ctcgtgaacg taaacggacg
     7861 atgaaacaaa tcgaaaactt agattatcaa tatgttgttg cgacagattt agctgctcgt
     7921 ggtattgata ttcaaggaat tagtcatgtc gtgaactatg agttgcccga tgacttagat
     7981 ttctacattc accgtactgg tcgtactggt cgtgccggac attctggtat tgcacttaca
     8041 ttatttgaac cagctgatga agaccgctta aaccaattag aaaaaatggg aatcgaattt
     8101 aagcacgttg actggaaaaa taaagaattt gttacacttg aagaccgcaa ccgccgtgcc
     8161 aaacgtgaag cgaaacgcga aacagctgac cctcgtgaaa tcggtatgcg taaaaaagca
     8221 aaacaaaaag gtaaaccaaa ctataaaaag aaaattaact acaaaatgaa cgaaatcaaa
     8281 cgtcgtgaaa gacggaaaaa acgataagtg aggaatgaat ttatgctaag attaggttct
     8341 catgtatcaa tgagtggtaa gaaaatgctt cttggcgcaa gtgaagaggc agcttcttat
     8401 ggctcaaata cgtttatgat ttatactggc gctccgcaaa acacgcgtag aaagccaatt
     8461 gaagaattga atattgaagc cggcttagaa cacatgaaag cacatgatat ggctgacatc
     8521 gtcgttcacg cgccgtatat catcaatatt ggcaattcag tgaagccaga aacctttgaa
     8581 ctaggtgtta atttcttgca atctgaaatt gaacgtacgc gtgcgcttgg tgccaagcaa
     8641 atcgtacttc atcctggcgc tcatgttggt gaaggggcag acaaagggat taaacaaatt
     8701 atccaaggtc ttaacgaagc attaatacat gatcaagatg tacaaattgc tttagaaaca
     8761 atggctggaa aaggttctga atgcggacgt acttttgaag aaattgctca aattattgat
     8821 ggcgtaacgc ataatgaatt attatccgtt actttcgata cttgtcacac acatgatgct
     8881 ggttacgata ttgtaaatga ttttgacggg gtgttaaatg aattcgataa aattatcggt
     8941 gttgatcgct taaaagtgtt acatatcaat gatagcaaga acgaacgtgg tgcacataaa
     9001 gaccgacacg ctaacattgg tttcggtcac attggctttg acgcacttca ttatattgtg
     9061 catcatccgc aattagcgga cgtcccgaaa atccttgaaa caccttatgt tggtgaagat
     9121 aaggcatcga aaaaagcacc atataaatgg gaaatcgcga tgttaagaaa tggcgaattt
     9181 gacccagatt tattaaataa aatccaaaat agttaaaaag gagacgaaaa taatgacaaa
     9241 aacacttgta ttcggtcata aaaatccaga tacagatacg atttgttctg ccattagtta
     9301 cgcagaatta aaaaaagcac aaggagcaga tattgaagcg gttcgtttag gagagcttaa
     9361 tagtgaaaca gcttttgttc ttgattattt ccaagtaaca gctccacgcc tagttcaaac
     9421 agttgcaaat gaagtttctg aagttgcact tgttgatcat aatgaacgcc aacaaagcgt
     9481 agacgatatt gacgatgtaa cagttacagc tgtagttgac catcaccgta tcgcaaactt
     9541 cgaaacatct gacccacttt attaccgtgc tgaaccagtt ggatgtacaa caacaattct
     9601 tctaaaaatg ttccgcgaaa atgaagtaga agtaagtaaa acagttgcag gtctaatgct
     9661 ttccgcaatt atttcagaca cacttctttt tcaatcgcca acgtgcacgc aagaagacaa
     9721 agtagctgct caaaaattgg cgcagattgc agatgttgat attcaatcgt atggcatgga
     9781 aatgctaaaa gcaggagcag atgttagcaa aaaaacagta gctgaactcc tacttgatgc
     9841 gaaagaattt aacatgaacg ataacaaagt agaaattgct caaatcaatg tagtggacgt
     9901 aaacgatgtg cttagccgtc gcgcagaagt ggaagcactt atgacgcaaa atattgtgga
     9961 taaagggctt gatttatatc tattcgtcat cactaatatc cttactaatg actctgttgg
    10021 aatcgctatt ggttcaaaaa cagcagtcgt agaagaagca tacggtgtta aatttgttga
    10081 aaaccaagca ccacttaaag gcgttgtatc tcgtaaaaaa caagttgttc caattttaac
    10141 ggacacattt gctaaataat tatattaacc tggaaaagct aagcaacttt tccaggtttt
    10201 cttgtctaat tttttaattc gaagtaatta cgatttacat tttctctatt attttatata
    10261 ctagtaaaag cggctagcaa atgctgtcaa aggagaaaca tgaatgaaca aaatcataga
    10321 agtaaataat gtaagctatc attatgataa agaacatgcc ttagaaaaca ttcattttca
    10381 agttgcaaaa ggcagtttta ctggtttaat tggccctaat ggttcaggta aatcaactat
    10441 gttaaagcta attcttggtg tactcaaaaa acaacaagga agcatctcct tatttggaga
    10501 aaaacaagca gatttcaaag actgggtcaa aatcggcttc gtttctcaaa aatcgaacgc
    10561 ctttaactcc gcattcccag ccactgtgaa agaagttgtc gcaagcggat taacaaagaa
    10621 aaaaggctta tttaaaacat taaacaataa agataaagaa gacatcgatt acgctttaaa
    10681 gcgagtagaa atgacagatt atctgcatcg caacatcggg gagctctctg gtggccaaca
    10741 gcaacgcgtt tttattgcac gtgcgctagt tagcagacca gaacttttaa ttctagatga
    10801 gccaaccgtt ggagtggatg tcgaaaatgt caaagctttt tatgaacttt tggccgaatt
    10861 aaaccggaca gaagaaatga cacttttact cgtgacacat gatttgatgg cagtgaatac
    10921 gtatgtcaat catgttatta gcattaataa gcgtattatt tttgacggtt ccgcacatga
    10981 atatcaacat tatttggctg accgcgaact tgaaatatta gcagaacagc gtagaaggga
    11041 ggatgcttgc cttgattgcg acgcttctcc agtatgattt tattcgtaat acatttattg
    11101 taggacttgt gatcggtatt gtagctccat tacttggaag ttttatcgtt gttagaaaac
    11161 tttctttaat ggcagatgca ctgagtcatg tgacgcttgg tgggattgca gtaagtttat
    11221 ttttaagtaa aacttattta ccattagctg cccttaatcc gttatatctt ggctttggtt
    11281 tttccgttgt aggatcttta ttaatggaaa aacttcgcaa cgtctataag cattttgagg
    11341 aactagcaat tccaattatt atgtcggctg gtatgggttt ctctgttatt tttatttcct
    11401 tagcaaatgg ctttaataca gatttgttta gttatttatt tgggagtgtt agtgctgtta
    11461 gccgcacgga tatgattaca attgtcgtta ctgcgattat tgtatttatc gttattttat
    11521 ctttatataa agaactattt ctgttatcat ttgatgaaga atatgccaaa gtttcaggtc
    11581 taaaagccaa agtattcgat gttatattta tggtattagt cgctcttgta atagcgtctt
    11641 ctatgcgaat cgttggtatt ttacttgttt cgtctttaat gacattgcct gttgcagcag
    11701 ctattcgtat tgctaaagga tttaaacaaa ccattttatt atcgatttta tttggtgaaa
    11761 ttgccgttat cggtggtctg tttaccgctt attacttgaa tttagcgccg ggtggagcca
    11821 tcgttattat atccgtgcta cttttaatcg tcaccatttt atatcaaaaa atacgtcaaa
    11881 aaatcttaat ttcaaaacga ggtgaggaaa atgggactta cagcaactga agcactcatg
    11941 aaaatgaagg aaaaaggcta taaacacaca gataaacgtg aatttctaat taacttacta
    12001 gcgaggaaaa ataaatattt gacggcaaaa gatgtcttag aaaatatgaa agatgatttc
    12061 ccgggaataa gttttgatac tatttaccgc aatctctctt tatttgtaga attaggtatt
    12121 tttgaagaaa cagatctttc tggtgaacgc aatttccgtt tagcttgtac acacgagcat
    12181 caccatcatc attttatttg catgaaatgt gggaaaacaa aagaaattat gatgtgccca
    12241 atggattttt taaccgaagc tttacccggt taccaaattg acggtcataa attcgaggtt
    12301 tacggcgaat gtccagaatg tttacaagcc tcttaatagc aaaaggtccg aattccgggc
    12361 cttttttatt ttatgcgtaa tgttcacagt tatttcatat ttgtttctta ttctggacac
    12421 tttttatcgc taaagtaaga agtagccgaa agacgaagga gaggaacagt ttgacaaaat
    12481 taaaaaaagt gatgatttcc gtaatagcag ctacattact actactcgct ggttgtggaa
    12541 gcagtgctgt tgttaaaaca gatgcaggaa gtgtcacaca agatgagctt tacgaagcga
    12601 tgaaaacgac ttatggaaat gaggtcgtgc aacaacttac tttcaaaaaa atcttagaag
    12661 ataaatacac cgtaacagaa aaagaagtaa atgcagaata caagaaatac gaagaacaat
    12721 acggtgactc atttgaatca acgttatcct ctaataattt aacaaaaact tctttcaaag
    12781 aaaatttaga gtataattta cttgttcaaa aagcaacaga agcaaacatg aatgtaagtg
    12841 aaagcaagct aaaaacctac tacaaaactt gggaaccaga tattactgtg cgccatattt
    12901 tagtagacga tgaagctaca gcgaaagaaa ttcaaacgaa attaaaaaat ggtgaaaaat
    12961 tcactgattt agctaaagaa tattctacag atacagcaac tagtacaaat ggtgggcttt
    13021 tagatccatt tggtcccggt gaaatggacg aaacatttga aaaagcagcc tatgcattag
    13081 aaaataaaga tgatgtaagt ggcattgtga aatctaccta cggatatcac ttgatccaat
    13141 tagtgaagaa aacagaaaaa ggcacttacg ctaaagaaaa agcaaacgta aaagccgcat
    13201 atattgaatc tcaattaacc acagaaaata tgatagctgc actcaaaaaa gagttaaaag
    13261 ctgctaatat tgatattaaa gatagtgatt taaaagatgc atttgcagat tacacaagta
    13321 catcttcaac aagttccaca acaacatcta actaatatta cttcggatcc acctatacaa
    13381 aaagcccttt actggttttg attcccgtca aaaacacact ccagtaaagg gcttttctat
    13441 gcaaataaac gaatcattgc catggaaata attccaataa tcacaatcca cattaaattt
    13501 ttagtcaaaa tagctgttag aatggtagga agtgatgcaa gtaaattctc tatattaatt
    13561 cctggaaaac cattttccct tgtaattaat aaactttgaa cgaacagcgc agtgaggata
    13621 caaaggggga catacgataa ataacgaatc actacatctg gaagctgtaa tttacgcaca
    13681 aatataaacg gcaagacacg cggtataaac gtcacaagtc cacatccaac aatgacaaat
    13741 aaagtatagg aacttaacgc catctctcta taatcactcc catcaaacat ccgagtaagg
    13801 ttgcagttaa aatagctagt tctggcgtca tcacacgcat aaagagaatt aaaaatacag
    13861 cgactagtat catgacgaac aaactcgtac ttattttttt gcttttatca ctcactactt
    13921 gtaaatatag caaaccgata aacattgcag acaacgcaaa gtctaaacca aattgttctg
    13981 gatttgggag ccagttgcca ataaatgccc caacgataca agcgacaatc catgccaagt
    14041 aggcagttac atttattccg tgcatccatt tagcactaac aggtttttta ttaccaatct
    14101 gattcatcga aaccccaaac gtttcatccg tcagaagggc accaatccca atattattcc
    14161 acaaagaata cttcttaaaa tgaggagctt ccgccatact cattaaaaaa tgccttgaat
    14221 taattaaaaa agtagtaaaa atgattgctg atatcggact ttgtagtaat aacaaaccag
    14281 aaataataaa ttgcgccgca cctgcataaa cgataatcgc aagtagcgtc acttctaaaa
    14341 ggcttaaatg ggatgctttt cctactactc ctgcagcgat accaatccca gcataaccaa
    14401 ggacggtagg aaggcaggct ctaacaccat cataaaaact aagctcattt tctttttcca
    14461 acaaaaatcc cccttgaaac aaaaacccca atacgattat ctaaggcttt ccaaatctgt
    14521 tttcttttca aaatattctt ctgccaaaat atcaatttct ttcttaagtt cttctaccat
    14581 aatggcttct ggtacttttc ggatgatttt accatgtcta aaaagaaggc cttctccatt
    14641 tgaaccagca attccgatat ctgcttcgcg agcttctccg ggaccgttga ccgcacagcc
    14701 aagcacggct actttaatcg gagctttaat cgttgctatg taattttcca cttcattagc
    14761 gatacgaatc aaatcaatct ctattcgacc gcaagtaggg caggagataa gcatggcggc
    14821 attcgaggaa aggccaaacg attttaaaac ctcccgggcc acttttatct cttccacagg
    14881 atcagcactc aaagataccc gtaatgtatt tccaatgccc aaactgagta tcgctcctaa
    14941 accagcagca ctttttattc ctccagcaaa ctgcgtacca gattctgtaa ttccaagatg
    15001 tagaggataa ttaaatgcgc gactagcttt atcataagct tcaattgcta aattcacatc
    15061 agaagctttc aaagaaacaa tgatatcata aaaatctaaa tcttcgagaa ttttaatatg
    15121 ggcaagtgca ctttctacca ttccttcagc agtagggtaa ccgtattttt gaataatttt
    15181 cttttctaaa ctaccagcat taaccccaat acggattgga atattttttg ctttagaagc
    15241 attaaccact ttttccaccc gatcacggcg accgatgtta ccaggattaa tccggatttt
    15301 gtcaacacct gcatcaatag ctttaagtgc tagtcggtaa tcaaaatgaa tatctgccac
    15361 aagaggaata tgaatccttt tcttgatggc actaagagca ttggctgcac gctcatcagg
    15421 acaagcaact cgcacaatct gacaacccac ctcttctaat cggtgaattt ccgctactgt
    15481 tgcttcgaca tcatgtgtct ttgtagtagt catgctttgg atagttaatt cctcactacc
    15541 accaatagtt aaattaccta cttggactgg ccgagttttt tcgcgaaaga ttctttcatt
    15601 caaagagacc gctcctttag actagctttt attttttatc ataccatttt catgaaacaa
    15661 aatcacgtga atgatgccac aaaaaagcca cctacgtgag caagtggcta tcatttattt
    15721 ctctaaaatt gtagggtcgc ttggaggaat tgaacgaatc gcaaggaaaa caaaaatcat
    15781 actcacgacc atattaattt ccattccaaa aggaacaata atttgtaaag cctccataat
    15841 catagtgaaa actgctgcca gggtaatact gtaagaagca atcatccaat tttggcggaa
    15901 ggcgatacca gttcggccaa atccagaaag gataaatccg aaaagtgcat acagtgctac
    15961 tcggaagaag accgagccta acgtaaagat aaagagcact agtaaagcaa ttggaataaa
    16021 gtatttagct aaagactcaa tcgaattata taaatgaact aaatctgact tatcactaat
    16081 tcctgctgtg tcataactaa cagattgcga aacaccagct gcagtaatat aaatactatc
    16141 tgaaagaaaa gctaccgcgc tatcataaga agcgattttg ttatctacat catccttatc
    16201 cagtgttcca gaagcatcaa aataaatatg tagttcatct tgatcaatcg agataggtat
    16261 attctttgca tttttatctg ttaacactaa tttgccatca gtcactttaa aatcggggat
    16321 ttcattggtg atagtttctt cgccaacttt aagtgcattt tttgttgtaa tgtttgtaaa
    16381 atatgctaat ggaaggaatg ttacaaatga taaaacaata atgtacacga tacttttcct
    16441 aattttatca tttcgaaacg atgctatatc cgcaggggag tataaactct tccagaagcg
    16501 tttaaaaata ttcattcttt tttcaacacc tcgcctaatg gtttaacttt tgagtttcag
    16561 ggaaaaagat acatgtatgt gcaaaagaac gtactttttc cacctaaact taatcatagc
    16621 tcgaaatggt tgcaaaatca atgttgaaac atcactgagc agaaaaattg caagcatttc
    16681 aggagcatgg taggctaaat ggtgtaagaa gaaactgttt ttaaggttga tagtagttct
    16741 attgaaatgg gacatgaaac ttttgcctta tacgtcattt cttttcacgt aaaaacaata
    16801 caaggaggaa tttttaatga cttacgaatt acctaaatta ccttatactt atgatgcttt
    16861 ggagccgaat tttgataaag aaactatgga aattcactat acaaagcacc acaatactta
    16921 tgtgacaaaa ctaaatgaag cggttgctgg tcatcctgaa cttgcaagca aatctgtgga
    16981 agaattagta gctaacttag atagcgttcc tgaagatatt cgcggcgctg tccgtaacca
    17041 cggtggcggt catgctaacc atacattatt ctggtctatt cttagcccaa atggtggcgg
    17101 cgctccaact ggtaatttaa aagcagcaat cgaaagcgaa ttcggtactt ttgacgaatt
    17161 taaagaaaaa ttcaatgcag ctgctgcagc acgttttggt tctggctggg cttggctagt
    17221 agttaatgat ggcaaattag aaatcgtttc tacagctaac caagattctc cactaagcga
    17281 tggcaaaaca cctgttcttg gcttagatgt ttgggaacat gcttactacc ttaaattcca
    17341 aaatcgtcgt cctgaatata tcgacacatt ttggaatgtt attaactggg atgaagctaa
    17401 caaacgtttt gacgcagcta aataataatc acaagactca cttcggtggg tcttttttta
    17461 tttctaatga atttctaatg aacttacagt ggaaaaatca tgttatttca gctacaatag
    17521 ggaaaggtat tattgaaaag tgaggtaact atgcgtgaaa ctaaatttta gaaaaaagaa
    17581 aaaagattcc actaagaaga aacgcgc
//
LOCUS       DASDXX010000040        17169 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.040, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000040 DASDXX010000000
VERSION     DASDXX010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17169
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.040"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..645
                     /locus_tag="U0280_001063"
     CDS             <1..645
                     /locus_tag="U0280_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate phosphodiesterase"
                     /protein_id="HEM2271017.1"
                     /translation="KEIVAIKKTKNLLEDLTTHLLCVTNQTEYGKFINWYEMEVKKVL
                     QVYPNQHFIVKISFQQLYFRETMLLLENLQKDSRRITIELVGDSQISPNSKEHFSAED
                     SDAFLKGKLKMLRKWHYFISKHIESGAIEQTLIFTPYIDELKYSLTQKSKLLNNITEL
                     KFFLSFWKNWAELRFVDFLVLVDEKNEFVSYVLLPDELNVRCKMYENFGGMVSE"
     gene            638..1642
                     /locus_tag="U0280_001064"
     CDS             638..1642
                     /locus_tag="U0280_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271018.1"
                     /translation="MSKNVKKIVITILALIMTVGLASGFIAPIKASAATNNFTVKVEY
                     VDADGAEIAPSDTLTDYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKIID
                     VSYVDETGKDLLPVVEIIDSEAAILETIPDYTFVRKDISIDGSHIIFRYKKNISTIPE
                     FGKPNQVTVNYLDENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTE
                     SPQTINIIYQKKAPEQAPSMEPLPDTAVPENPPVEKAKIKKSKIETTEKRTISKAKIE
                     PKALKLTKVEQKKQETKDRLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRCRKE
                     "
     gene            complement(1685..2098)
                     /gene="psiE"
                     /locus_tag="U0280_001065"
     CDS             complement(1685..2098)
                     /gene="psiE"
                     /locus_tag="U0280_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HEM2271019.1"
                     /translation="MKRLEKISSIVPILLRITLNLALIMVGFTLVAFLIREAFTIFNN
                     IFFLDTDVSYYYMTQDILTFFLYFEFIALIVKYFESHFHFPLRYFIYIGITAIIRFII
                     VDHSSATSTLILSGAILLLVAALFLANTKMLKREG"
     gene            2187..3908
                     /locus_tag="U0280_001066"
     CDS             2187..3908
                     /locus_tag="U0280_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014092266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271020.1"
                     /translation="MLKRFFSYYKPYRTLFIIDFGCAVLAAILELAFPVAVNHVIDTL
                     LPGKDFGLIITAALALLFFYILNTFMQYIVTYFGHMLGLNIETDMRRDLFSHLQKQPF
                     GFYDNQKTGKLMSRMTTDLFEIGEVAHHGPEDIFISIMSLFGAFFLMLNINVKLAIST
                     FILVPILTVLIVYFNKRMTKVTTGIFKDLGNFNAGVENAISGVRVVQAFANEPHEKGR
                     FRVLNQAYRQSKLMFYKVMGLSFSFNYFLMRLISLFALLFGAYFTINGEISYGEFVGF
                     ILLTNVFIRPIEKINNVIESYPKGFAGFKRFLEVMDTEPAIQDEKDAKPAKAFRGDIA
                     YNHVSFEYSDGKNVLNHINLSIKAGETVAFVGPSGAGKTTICNLLPRFYDVSAGEITI
                     DGENIKRFTLPSLRAQIGVVQQDVFLFSGTVRENIAYGKLDASDEEIEHVVKLAHLSK
                     VVEEMPDGLDTIIGERGVKLSGGQKQRLAIARMFLKNPPILILDEATSALDTETEQVI
                     QASLEELAEGRTTLIIAHRLATIKHADRIIVVNETGIAETGTHNELLAQDNGAYKRLY
                     DAQFNTI"
     gene            4201..5586
                     /gene="hpt"
                     /locus_tag="U0280_001067"
     CDS             4201..5586
                     /gene="hpt"
                     /locus_tag="U0280_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose phosphate transporter Hpt"
                     /protein_id="HEM2271021.1"
                     /translation="MSLFSLKRKNHFVPLEIQRQQWFKHFIVAFMSVFICYLTVYLLR
                     NNFKAAQTLLIEQNHFSTTELGMIGLAFSVMYGIGKTILGYAVDGRNAKKIMSFLLGI
                     SAIISIIIGILLVTKQATVGILFILWGANGFVQSPGGPASYSTITRWTPKLKRGRWLG
                     FWNASHNIGGALAGIVAFWGATTFFNGGAGGMFIVPGIIAIIIAIICFSVGHDEPEEL
                     GWNSAAEIFEEREEQGESETKDLSRFQILCRFVINNPWVWTLCVINIFIYIVRIGIDN
                     WAPVYCIQALGWSTKDAIMTISFFEIGALLGSLSWGWLSDIMKGRRMLCSIIAVVIEF
                     FMLISYSQVTSVYSMYTVLFILGFLVFGPQLLIGVSVIEFVPRNALAVTNGLTGTFAY
                     LFGDSFAKVFLGYIADPTKAGIQIFGYTLHGWGATFTIMFTALIIAGLMMIPVALKQE
                     KIIRQAKVLHL"
     gene            complement(5694..6905)
                     /locus_tag="U0280_001068"
     CDS             complement(5694..6905)
                     /locus_tag="U0280_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance MFS efflux pump"
                     /protein_id="HEM2271022.1"
                     /translation="MSSTKSIINKKTLLFGLISVFLCGMGFSIIMPVVPFLVTPYVTN
                     ASDQALMVTLLTSVYALCVFFAAPGLGALSDRFGRRPVLLICFIGSAIGYFIFGLGGA
                     LWVLFLGRIFEGITGGSISTLFAFFADITPQEERTKYFGWVSAAAGAGAALGPAFGGL
                     LAHFGYAMPFFFGAAITFINFLFGYFYMPESLEEANRLKRIPLMRLNPFSQLLKILTI
                     KNLGRLLIAAFFIWVPNGSLQAVMSQFAIDSFSWKPVLIGMMFSIMGIQDILSQAFVM
                     PKLLLKLTDKQIAILGMIAEIIGYLLIAASSIFTLAPLLVIGMFVFGFGDSIFGPSFN
                     GMVSKSASASEQGRIQGGSQAIQSVARIIGPVIGGQLYITLGHAAPAIMGVLLITVAI
                     FILYKKTSLAK"
     gene            complement(7035..7505)
                     /locus_tag="U0280_001069"
     CDS             complement(7035..7505)
                     /locus_tag="U0280_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2271023.1"
                     /translation="MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYI
                     AKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTAKGAEI
                     NQVHDDLHQEFLDRDKVVFEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE"
     gene            7707..10349
                     /locus_tag="U0280_001070"
     CDS             7707..10349
                     /locus_tag="U0280_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-transporting ATPase"
                     /protein_id="HEM2271024.1"
                     /translation="MEIYRKSAAETFTQLEATEQGLTTSEVTKRQEKYGFNELKNKKK
                     DPLWKLFLETFKDPMVIVLVVAALVQLVLGEVVESLIIFLVLIVNSIISVVQTRKAES
                     SLDALREMSAPVAKVIRDGSKQSIHARELVPGDVVILDAGDFVPADGRLFESGSLKID
                     EGMLTGESEAVEKYIDTIPDEVGLGDRVNMVFSGSLVVYGRGMFVVTGTASETEIGKI
                     AGLLETAEAKQTPLQRKLESFSKKLGLGILALCVLIFAVEAGRVLLGDNSADMATAIL
                     NAFMFAVAVAVAAIPEALSSIVTIVLAVGTNKMAKQHAIIRKLPAVETLGSTSVICTD
                     KTGTLTQNKMTVVDYYLPDGTKENFPESPENWSEGERRLIHIAVLCNDSNINSEGKEL
                     GDPTEVALIAFSNKNNQDYNEIREKFIREGEIPFDSDRKLMSTLHTFNGNKAMLTKGG
                     PDVMFARCSYVFLDGEEKPMTEEILAKLKETNEEFSNQALRVLAYGYKRMPADTTELK
                     LEDEQDIVLVGLTAMIDPPREAVYASIEESKKAGIRTVMITGDHKTTAQAIGRDIGLM
                     DADDIALTGQELDAMPEEELDKKLEHIAVYARVSPENKIRIVKAWQKKGKITAMTGDG
                     VNDAPALKQADIGVAMGSGTDVAKDSAAMILTDDNFVSIVDAVGVGRTVFDNIKKSIA
                     YLFAGNLGAIIAILFALVLDWINPFTALQLLFINLVNDSLPAIALGMEKAEPDVMKRK
                     PRDINEGIFAGGTMRAVISRGVLIGIAVIISQYIGLQISPGMSVAMAFTTLILARTLQ
                     TFAARSNVQTAFGAGFFSNKYVIGAVLLCFVLYGITVLPGAREIFSIPASFGLHEWSI
                     AAGLALAAVVMMEIIKLVQNKFFK"
     gene            10801..16884
                     /locus_tag="U0280_001071"
     CDS             10801..16884
                     /locus_tag="U0280_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial Ig-like domain-containing protein"
                     /protein_id="HEM2271025.1"
                     /translation="MIKATRARHYLVLLMAFFLVLGQLNLTALKVFAKENGNDELTYE
                     VQSKLAEDKKSADLTIKVTPKNDQVKILTIETPDGEKKEGQEVSYKAEKNGTTNFLIN
                     YQDASEEKAETKKYTASYEVNDIVSDDEANKDNTTEKVTEKEADNIQPPSTKDSNKNL
                     KSLKAGQTTVDLKIPDYDQTAWANGDIKEVTATVNFGDNTSTGKKVNFTLPDGMRFVS
                     LPVPSNYQAGSNVDKGVLSHLGASDPLGIAITSVKVPDKEKAYNQATFGTVSYELSPG
                     TEKASFTFSVRVDAAKYYGAVDLATPIKTEIFMGETTSPVASAEQAIHAEGNKVVGYT
                     NQDHVKTMFRTWYSNQRLTEVLASTDTTDSYNYTKSYSVVNGLNNLDNRGSAYYLAKN
                     IEMTLYYPEGMEFVNVVNHGGTPLTDNSNLTITNYPSENKVVVDCKQLNFNSANNSIY
                     GVKYKVPKGTPVGTYSTAKAPHAVITTYDGEVFETDALTNNTNDLTTLAPLDTCKVVD
                     TSNNKMNLFSANGTINPDNETWAGSIQIDNKRTSGVKKNQMYHIEFDPNWEAYMVNIP
                     FDSTISENKITDVQYKTNLNDTFRTYEGALTKNNNQMYRLDANAVELQEGEYFTEVKA
                     NVGDFSPGYQNTEASATYRWNSTVSYGKVKPGITSVQYKGSIWDADDEAETKSSATST
                     YSVLNTESTAANGTAAFYDKAGNVVKTASPGETIKTKATLLLSDYPYGTRTVLNNPEV
                     YLRALEGTKVLPSSIKLTDQDGKDVNFSIQQETANNGDKVYVLKTTDVSVGAFTGYPA
                     KSKFLNISYDTTFDVTLAKSINMDAQEVLAWGGPNVASAIANNNFSDVGLDVNKNGKD
                     NEKLLSVNSSTLSVPKQDTVAVETFLSIAGEGEKAAYTEGDDSTVSYFTPGTDAEYTV
                     QITNASNGEATTFELYIPIPKTGQNFGEKFQSEAFKWDMKLNSALAINDEQKNQFEVS
                     YATQANENNYDSTSIYTETVSDYEKVNMVRIKVKTQINAGEAQTFKVPLKVDETFDSA
                     TEGNKIGERDVYNPFYRVITNTFSGSLSGTKVGAELVIGEVSGTLFNDKDVNGIYEKA
                     KGDEPLANETVELYKWNDATSNYEPAKKAGENVTTKTNSDGKYSFDYNSGVGYGNYAV
                     KFPDKAGYQFTLKNVGKDVTLDSDVPYSGAEKGWNKEIDPTQPNAQYINAGYYAYNPT
                     QDLKVNLNEKQVQMGRSLEITLPKVASTTGQAAEDTIEPSFFKNIKAATNGYKWTVAD
                     TNVATVQTLADGSAAVVGVSTNNKTIDVTDLTITIQDIFGTEQSSTAPVYVTGTEGQV
                     AQQDGYTMGATDFSMEYKEATELTKAQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVS
                     QTQLDAIKNGSNQGSVYPLTYSITKDSKTVSVTIQVTVAKDLTAVNAHDSTIYIGDAW
                     EAKDNFDSATNKEGATDIAFSDVTVTGSVNTAVAGVYPVTYTYNGVSKKINVTVKAIK
                     TAVNAHDSTIYTGDTWNARDNFDSALDKDGNSVAFADVTVTGSVNTNETGTNTITYSY
                     DGVSQTITVTVVENKEGISAHDSTIYAGESWNAKDNFDSAFDKDGNAVDLEDVTVTEK
                     PTVDTTKAGAYEVTYKYGKVSKKITLTVKAKLTAVNAHDSAIYIGDTWSAEDNFDSAL
                     DKDGNSVAFADVEVKGTVDTDKAGTYPVTYTYDGVSKTINIQVKDILTAVNAHDSEIY
                     IGDNWNAKDNFDSAQDKDGNTVNWNEINVSENPAVDLETVGVYQVTYSYGGVSKTINL
                     TVHPRKTSLEVHDSTMYTGDKWKAEDNFDNATDKKGDQIPFKDVTVTGQVDSKTAGTY
                     EISYIYDGLKKVARITVIKNQAQITVKDSVIPYGGKWEAEANFIGATNRDGVAIPFSK
                     IKVDGTVDVNKAGTYKVIYTYDPNEGTADAGKKELSVTANIQVEAEFVKPIKPVDPSK
                     PTDPKKPSTEKTPLKVVDNKQHTATYEAAKPLPKTGDQTNNWVIWTGICLLSMSMLLW
                     VVMRGRKKNYQ"
     gene            complement(17022..>17169)
                     /locus_tag="U0280_001072"
     CDS             complement(17022..>17169)
                     /locus_tag="U0280_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM2271026.1"
                     /translation="LFTAFLGGAFGSWMSMQLFHHKTQKPKFRILVPLAMVWTVGMVI
                     WWLY"
BASE COUNT         5923 a         2976 c         3476 g         4794 t
ORIGIN      
        1 aaagaaatag ttgctattaa aaaaactaaa aatctcttgg aagatctaac tacgcatttg
       61 ttatgtgtta caaatcaaac agagtatgga aaatttatca attggtatga aatggaagtt
      121 aaaaaagttc tacaagttta tcccaatcag cactttattg ttaaaatttc ctttcaacaa
      181 ttatattttc gggaaacaat gctgttgctt gagaatttgc agaaagatag ccggcgaata
      241 acgattgaac tagttgggga tagtcagatt agccctaatt caaaggaaca tttttccgca
      301 gaagacagtg acgctttttt gaaagggaag ttgaaaatgt tgagaaagtg gcattatttt
      361 atttcaaagc atattgaaag tggtgccatc gaacaaacgc tgatttttac gccctatatt
      421 gatgaattga aatatagttt aacgcaaaag tcgaagctct taaacaatat tacagaatta
      481 aagttttttc tatcattttg gaaaaactgg gccgaacttc gatttgttga ttttttagtt
      541 ttagtagatg aaaaaaacga atttgtatcg tatgtacttt taccagatga attaaatgta
      601 cgttgcaaaa tgtatgagaa ctttggagga atggtcagtg agtaaaaatg taaaaaaaat
      661 agtgataaca atcttagcat taataatgac agtaggattg gcgagtgggt ttatcgcacc
      721 tataaaagca agtgcagcca caaataattt cacggttaaa gtggaatatg ttgatgcaga
      781 cggagccgag attgctcctt cggatacatt aactgattat cattatgtat ctacaccaaa
      841 agatattcct ggctataaat taagagaaat acctcataat gcgacaggca atatcacaga
      901 tactgggatt atcgtgcgtt acatatatga taaaataatc gatgtaagct acgtagatga
      961 aactggcaaa gacttattac cagtagtaga aatcatcgat agcgaagcag ctattttaga
     1021 gacaatacct gactatacat ttgtaagaaa agacattagc atagatggct cgcatatcat
     1081 ttttcgctat aaaaagaata tttctaccat tccagagttc gggaaaccga atcaagtcac
     1141 tgtaaattat ctggatgaaa acaatacttc aattgccccg tcattatatt tgagcggact
     1201 tttcaacgaa gcatacaatg ttccgatgaa aaaaattaaa ggttatactt tattaaaata
     1261 cgattcggaa attcttggcg tttttaccga atcaccacaa acaatcaaca tcatttatca
     1321 aaaaaaagcg cctgagcaag caccaagcat ggaaccatta cctgatacag ctgttccaga
     1381 aaatccgcca gtagaaaaag caaaaataaa gaaatcaaaa atagaaacca cagaaaagcg
     1441 aactatatca aaagcaaaaa tcgaaccaaa agcattgaaa ttaaccaaag ttgaacaaaa
     1501 aaaacaagag acgaaagatc gcttgccaaa aacaggtgat agctcggtaa atttattaat
     1561 tacgtgcctc ggaattattg ccatatcgtg tggcgtttac ttactcgtac aacaaagcca
     1621 gaagcgttgt cgtaaagaat agaaaataaa aacaagcaat cctattttcg gattgcttgt
     1681 ttttttaccc ttctcgttta agcatctttg tattagctaa aaacagtgca gcgacgagta
     1741 aaagaatcgc gcctgaaagt attagcgtcg aagttgcgct agagtggtcg acaataataa
     1801 atcgaataat cgctgtgata ccaatataaa tgaaatagcg cagcgggaaa tgaaaatgag
     1861 attcgaaata tttaacaatc agcgcaataa attcaaagta aaggaaaaac gtcaaaatat
     1921 cttgtgtcat ataatagtaa gaaacgtctg tatctaaaaa gaaaatatta ttgaaaatcg
     1981 taaatgcctc tctaattaaa aaagcaacaa gggtaaaacc gaccataata agcgccagat
     2041 ttagggtgat tcgtagcagg atgggaacaa tagaagaaat tttttctaat cgtttcatca
     2101 gttgcctcct ttccaaaaac gatatcgctt ttttagttat tttacactat aatgggaacc
     2161 atgactattt ttaagggggg attgttattc taaaacgctt ttttagttat tataagccgt
     2221 atcgaacact ttttatcatt gattttggtt gcgccgtctt agcagctatt ttggagctgg
     2281 cttttccagt cgcggttaac cacgtgattg atacattact tccaggaaaa gattttgggc
     2341 tgattattac tgcggcactt gccttattat tcttctacat acttaacact tttatgcagt
     2401 acattgtcac ttattttggc catatgcttg gtcttaacat agaaacagat atgcgtagag
     2461 atttattcag tcatttgcaa aaacaaccat ttggctttta cgacaatcag aaaaccggaa
     2521 aattgatgtc acgaatgacg actgacttat ttgaaattgg tgaagtagcg catcatggtc
     2581 cagaagatat ttttatttcg attatgtccc ttttcggtgc atttttctta atgttgaata
     2641 tcaatgtgaa attagcgatt tcgacgttta ttctagtacc gattttgact gtattaattg
     2701 tttacttcaa caaacgaatg accaaagtaa caaccgggat ttttaaagat ttagggaatt
     2761 ttaatgctgg agtggaaaat gcaattagcg gggtgcgtgt cgtgcaagca ttcgccaacg
     2821 aaccacatga aaaagggcgt tttagagtgc tcaaccaagc gtatcgtcag tcaaaattaa
     2881 tgttctacaa agtgatgggc ttgagttttt cgtttaacta ttttctgatg cgattgatta
     2941 gtttatttgc ccttttattc ggagcttatt ttacgattaa tggcgaaata tcatacgggg
     3001 aatttgtcgg atttatcttg ctaacaaacg tgttcattcg accaatcgag aaaatcaaca
     3061 acgtaatcga aagctatcca aaaggctttg cagggtttaa gcgattccta gaagtcatgg
     3121 atacagaacc agcaatccaa gacgaaaaag acgcaaaacc agccaaggcg ttccgcggtg
     3181 acattgctta caaccatgta tcttttgaat atagcgatgg gaaaaatgta ctaaatcata
     3241 taaatctttc tatcaaagcc ggcgaaaccg ttgcctttgt tgggccaagt ggagctggga
     3301 aaacgacgat ttgtaatttg ttaccacgtt tttacgatgt gtcagctgga gagattacaa
     3361 ttgacggtga aaatattaaa cgatttactt taccgtcttt acgagcacaa atcggtgtcg
     3421 tgcaacaaga tgtctttttg ttttccggta cagttcgcga aaatattgcg tacggaaaat
     3481 tagacgctag cgatgaagaa atcgagcatg tcgtgaaact tgcccatctt tccaaggtag
     3541 tagaagaaat gccagatggt cttgacacca tcattggtga gcgcggagtc aaactttctg
     3601 ggggacaaaa acaacggtta gctattgcgc gaatgttttt gaagaaccca ccgattttaa
     3661 ttttagatga agcgacgtca gcacttgata cggaaacaga gcaagtgatt caagcctcgc
     3721 tagaagagtt agcggaagga agaacgactt taattatcgc gcacagactc gcaacgatta
     3781 agcatgccga tcgaattatc gttgtaaatg aaacgggcat cgcagaaact gggacgcata
     3841 atgagctttt agcgcaagat aatggtgcct ataagcgatt atatgatgct cagtttaata
     3901 cgatttaacg agtaaaaact ttcgggtttt aggaaatatt ttactaaaag gaaagcagga
     3961 attatttggg aaccccaaga taattcctgc tttttgtttt ctgcatgata acaagtgtta
     4021 atgacggaaa tagaatttct gttttatatt tttagcagcg caaaagggga aataaagcat
     4081 ttggacagca gaggtgattg ctttagaaaa attgatagac tttatatgga aacgtttgcg
     4141 taataatgct catcgcattc taaatttgga atgaaaatta cacttgaaag gaaatttata
     4201 atgtcattat tcagtttaaa aagaaagaac cattttgttc cactagaaat tcaaaggcaa
     4261 caatggttca aacactttat cgttgcattt atgtctgtat ttatttgtta tctaacggtc
     4321 tatcttctaa ggaataactt taaagcggct cagacattgt taattgagca gaaccatttc
     4381 agcaccacag aactaggaat gattggttta gctttttctg ttatgtacgg aattggaaaa
     4441 acgattttag ggtatgccgt ggatggaaga aatgctaaaa aaataatgag ttttttatta
     4501 gggatttccg ccattatatc aattattatt ggaatacttt tagttacaaa gcaagcaaca
     4561 gtgggtatat tgtttatcct ttggggagca aatggatttg tgcaatcacc aggtggaccg
     4621 gcttcctatt caactatcac acgatggacg ccaaaattga aaagaggaag atggttaggt
     4681 ttttggaatg cctcgcataa tataggtggt gctttagcgg gaattgttgc tttttggggt
     4741 gcgactactt tctttaatgg cggggcaggg ggaatgttta tcgttccggg tatcattgcg
     4801 atcatcattg caattatttg cttctccgtg gggcatgatg aaccagaaga attaggatgg
     4861 aactctgccg ctgaaatttt tgaagagcgg gaagaacaag gagaatcgga gacaaaagac
     4921 ctttctagat ttcaaatttt gtgtcgattt gttattaata atccttgggt atggacttta
     4981 tgtgtcataa atatattcat ctatattgtt agaattggta ttgataattg ggcgcccgtt
     5041 tattgtattc aagcgctagg atggagcaca aaagatgcaa ttatgactat ttcttttttt
     5101 gaaattggag cattgctagg ttcattatcg tggggctggc tctcagatat tatgaaaggc
     5161 cgccgtatgc tttgctcgat tattgcagtt gtcattgaat ttttcatgtt aattagttat
     5221 tcgcaagtta caagtgttta tagcatgtat acggtattat ttattttagg attcttagta
     5281 tttggccccc aacttttaat tggtgtgtcg gtgatcgagt ttgttcctag aaatgcttta
     5341 gctgtaacaa atggcttaac tggaacgttt gcatacttat tcggagattc ttttgctaaa
     5401 gtctttctag gatatatcgc agacccaaca aaagcgggta tacaaatatt tggctatact
     5461 ttacacggct ggggcgcaac ttttaccatt atgtttacag ctttaattat tgcaggctta
     5521 atgatgattc cagttgcatt aaaacaagag aaaatcatcc gacaagcaaa agttttacat
     5581 ctataagttg aaaagtaatg agtgaagata aactaattac taaaaaggta tcctaattaa
     5641 tagtataagg ataccttttt cattgcaaaa tggtttgtta aatacgaaaa aaattatttt
     5701 gctaaagaag tctttttata aagaataaaa attgcaacag tgattaaaag gacacccata
     5761 atagcaggag cggcatggcc aagcgtaata taaagttgcc caccgataac gggtccgata
     5821 atacgcgcca ccgactgaat ggcttggcta cctccttgaa tccgaccttg ttcgctagcg
     5881 ctagcagatt ttgaaaccat gccgttaaac gaaggtccga aaatcgagtc gccaaaaccg
     5941 aaaacgaaca ttccgataac aagtagcggt gcaagtgtga aaatcgagga agctgcaata
     6001 agcaaatagc caataatctc agcaatcatc cccaaaatag ctatttgttt gtccgttaac
     6061 ttgagtagta attttggcat aacaaaagct tgcgacaaga tatcttgaat tcccataatg
     6121 gaaaacatca tcccaattaa aactggcttc caactgaaac tatcaatggc gaattgagac
     6181 atgacagctt gcaaggaacc attaggaacc caaatgaaaa atgcagcaat cagtaaacgt
     6241 cctaagtttt tgatggtcag aattttaagc agctgggaaa acggattgag tcgcataagc
     6301 ggaattcgtt ttaaacgatt tgcttcttct aaactctcag gcatgtagaa ataaccgaat
     6361 aaaaagttga tgaaagtaat cgctgctcca aagaaaaatg gcattgcgta accaaagtgg
     6421 gcaagcaatc caccgaaagc cggaccaagc gcagcacccg caccagctgc agcgctaacc
     6481 caaccaaagt atttcgtccg ctcctcttga ggcgtaatat cagcaaagaa agcaaatagt
     6541 gtacttatgc taccaccagt gattccttca aaaattcgac caagaaagag cacccaaagc
     6601 gccccaccaa gaccgaaaat aaagtaacca atcgcagagc cgataaaaca aatgagtaac
     6661 actggtcgtc tgccaaatct gtcacttaaa gcaccaagac caggcgcagc aaagaacacg
     6721 caaagcgcat aaacagatgt gagcagtgtc accataagcg cttgatcact agcatttgtt
     6781 acgtaaggtg ttacgagaaa cgggacaacg ggcataataa tactaaaacc catcccacaa
     6841 aggaagacag atataagacc gaaaagtaaa gttttcttat taataataga tttagttgaa
     6901 gacatgtaat actcctatcg attgtaatta gtgtcctagg aaacataatt agcttaactc
     6961 gtttttgttt ccttgtcaac aaaaataaaa caataaaaaa caacctaact tgaaaaatta
     7021 ggctgttact aggtttattc ggatttttga ttgtaaactt tctgcatttc attatctaaa
     7081 tgacgactat atttatccac aaattttaac acttccgcat attgtgcatc cgttacgtct
     7141 tcgaaaacta ccttgtcacg atcgaggaat tcttgatgca aatcatcgtg gacttggtta
     7201 atttcagcgc ctttagctgt tagacggaaa taaatttctt tcttattctc cggtttttga
     7261 taactttcaa tatagccttt atccatcagc ttttttgtaa ttttgctaat cgcgctcttt
     7321 gtcatataga aggcttccgc gagtttcgtt acattaggat cttcattttt ggcaatgtat
     7381 tcgatgcagt ggacttcaga aggtttatat ccctctagcg ctttttccat cttcacttta
     7441 ttaatccaag cgagcttatt aaataaatct ctgacgttcg ccatgacttg ttcattttta
     7501 tccatgccat gccctcctac tctatctgct tgtagtatag ctgttttttg tgtccggttc
     7561 aactatttat tgcctttcgt agctaaaagg ggaacttgaa agcgctgttt gttaagagtg
     7621 tgtaaatttc cagtgttatc aatattattt cactgttaag atttgttata cttaacacat
     7681 aaactgtttg gaaggggctg acatgattgg agatataccg caaaagcgcg gcagaaacat
     7741 ttacacaact agaagcaaca gaacaaggct taacaactag tgaggtaaca aaacgacaag
     7801 aaaaatacgg ttttaacgaa ctgaagaata aaaagaaaga tccactttgg aaacttttcc
     7861 tggaaacatt taaagatcca atggttattg ttttagtcgt tgctgcctta gtgcagttgg
     7921 ttttaggcga agtggttgaa tcgcttatta tctttttagt acttattgtc aactcgatta
     7981 ttagcgtagt tcagacgagg aaagcagaaa gttcgcttga tgcattacga gaaatgtctg
     8041 cgccggttgc caaagtaatt cgtgatggct ctaagcaaag tattcatgcg cgcgaacttg
     8101 ttccgggtga cgtcgttatt ttggatgctg gtgatttcgt cccagcagac ggccgtttgt
     8161 tcgaaagcgg ctctttaaaa atcgacgaag ggatgcttac cggtgaatcg gaagcggtcg
     8221 agaaatatat tgataccatt ccagatgaag tggggcttgg cgaccgtgtg aatatggttt
     8281 tcagcggttc cctcgttgta tatggtcgtg ggatgtttgt tgtaacaggc acagcgagcg
     8341 aaacagaaat cggaaaaatc gccggacttc ttgaaacagc agaagcaaaa caaacaccac
     8401 tacaaagaaa actagaatca ttcagtaaaa agctaggact cggtatttta gctctctgtg
     8461 tacttatttt tgcagttgaa gctggtcgcg tattactcgg cgacaattca gcggatatgg
     8521 caacggcgat tttaaatgcc tttatgtttg ccgtggccgt agctgtagca gcgattccgg
     8581 aagcactttc ttctattgta acgattgtac ttgcagttgg aacaaacaaa atggcaaagc
     8641 agcacgcgat tattagaaag ctcccagcag ttgaaacact tggctccaca agcgttattt
     8701 gtacagacaa aaccggaacg ttaacgcaaa ataaaatgac ggtcgtcgat tactatttac
     8761 ccgatggcac aaaagaaaat ttcccggaaa gtccagaaaa ttggtcagaa ggggaacgcc
     8821 gtttgattca tattgcggta ctttgtaacg attcaaatat taacagtgag ggcaaggagt
     8881 taggcgaccc gaccgaagtg gcgctaattg cctttagtaa taaaaataat caagattaca
     8941 atgaaattcg cgaaaaattc attcgtgaag gcgaaattcc ctttgattca gatcgtaagt
     9001 taatgtctac gcttcatacc tttaatggaa acaaggcaat gctaacaaaa ggcggaccag
     9061 acgtgatgtt cgcgcgttgc agttatgttt tccttgatgg ggaagaaaag ccaatgacag
     9121 aagaaatttt agcgaaatta aaagaaacaa atgaagaatt ttcgaatcag gcgctccggg
     9181 tccttgctta cggctacaaa cggatgcctg ctgatacaac tgaattaaaa ttagaagatg
     9241 agcaagatat cgttctagtt ggcttaactg caatgattga tccgccacgt gaagccgtgt
     9301 atgcatcgat tgaagagtcc aaaaaagctg gcattcgtac agtcatgatc accggtgacc
     9361 ataaaacaac ggcacaagca atcggccgtg acattggttt aatggatgcc gatgatatcg
     9421 cattaacagg ccaagaacta gacgcaatgc cagaagaaga actcgacaaa aaactagaac
     9481 atatcgcagt ctacgcccga gtttcaccag aaaataaaat ccgtatcgtc aaagcttggc
     9541 agaaaaaagg caaaatcaca gcaatgactg gcgacggtgt caatgatgca cccgctttaa
     9601 aacaagccga tattggtgtc gcaatgggta gcggaaccga cgttgcgaaa gactctgccg
     9661 cgatgattct gaccgatgat aatttcgttt cgattgtgga tgcggttggc gttggtagaa
     9721 ccgtttttga caatattaag aaatcaattg cttatctatt tgcaggaaac ctaggtgcga
     9781 ttattgcgat tttattcgcg ctagtgctgg actggattaa cccgttcact gcgttacaat
     9841 tactatttat caacttagtc aatgactcct taccagcaat cgcactaggt atggaaaaag
     9901 cagaacctga cgtaatgaaa cgcaaaccga gagatattaa cgaaggcatt tttgctggtg
     9961 gaacgatgcg cgccgttatc agccgcggtg tattaatcgg tatcgctgtt atcatctcac
    10021 aatatatcgg gttgcaaatt tcaccaggga tgagtgttgc aatggcattt actacgctta
    10081 tcctagcacg tacattacaa acatttgcag ctcgctcgaa tgtccaaacc gcatttggcg
    10141 caggattctt cagtaacaaa tacgtaatcg gtgcggtatt actttgtttc gtcctatacg
    10201 gaattacagt attaccagga gctcgagaaa ttttctcaat cccagcatca tttggcctac
    10261 atgaatggtc gatagcagcg gggctagcac ttgcagcagt tgtgatgatg gagattatta
    10321 aattagttca gaataagttt ttcaaataaa ttatataaac acagaaatca ctcgtttggc
    10381 ggaggatttc tgtgtttttt ctttctatcc aaaataactt atgagaatga taagtagtca
    10441 ttgcgcaggt gaaaattaat aattagttgt tttattggaa aaagtactaa aaaggtaaaa
    10501 aaacgatgag atgaattgtg tatgtggtga attttattgg tgaatggctc tgtaaaaggg
    10561 aagtggagaa tcttttaaaa attactaacg attcttcatt tgttaaatat gtcggaattg
    10621 tgtcggaaac cgctttttta tatgacgaac ttttgtataa aattcttata ttcattcttt
    10681 attttaaaaa ctcattttag tcatatgtac atagaagttt ttagcaagta atataagagt
    10741 tgcaatgtga ttacacatta tttcgcaact ataaaatata ctttgaggag agaactcttt
    10801 atgattaaag caactagagc acggcattac ctcgtactgt taatggcatt tttcctagta
    10861 ctaggacaat taaatttaac agcgcttaag gtttttgcaa aagaaaatgg gaatgatgag
    10921 ctaacttatg aagttcagtc caaattggct gaagataaaa aatcagctga tttaaccatt
    10981 aaagtaacac caaaaaacga tcaggtgaaa atccttacca ttgaaacacc tgatggagag
    11041 aagaaagaag gccaagaagt aagctataaa gccgaaaaaa atggcacaac taatttctta
    11101 attaattatc aagatgcaag cgaagaaaaa gcagaaacta aaaaatatac tgcttcttat
    11161 gaagtaaatg atatagtttc agatgatgaa gcaaataaag ataatacaac agagaaggta
    11221 actgaaaaag aagctgataa tattcaacct ccttctacta aagatagtaa caaaaatcta
    11281 aaatcactta aagcaggaca aacaacggtt gatttaaaaa tacctgatta tgaccaaaca
    11341 gcatgggcaa acggtgatat taaagaagta actgcaacag taaactttgg cgacaatact
    11401 tctactggca aaaaagtaaa tttcacttta ccagatggaa tgcgttttgt ttctttgcca
    11461 gtgccgagca actatcaggc tggttcgaat gtagacaaag gggttttaag tcatttaggg
    11521 gcaagtgatc cactaggaat agccattact tcggtaaaag tacctgataa agaaaaagca
    11581 tataatcaag ccacttttgg aacagttagt tatgagctaa gtccaggaac tgaaaaagcg
    11641 agctttactt tttctgtacg agtagatgca gcaaaatatt acggagcagt tgacttagcc
    11701 actccaataa aaacagaaat ttttatgggt gagacaactt caccagttgc ttccgcggaa
    11761 caagcgattc atgcggaagg aaataaggtt gtaggttata cgaatcagga tcatgtgaaa
    11821 actatgttcc gaacttggta tagtaatcaa aggctaacag aagtacttgc aagcacagat
    11881 acaacagatt cttataacta tacaaaatct tactctgttg tgaatggatt aaataattta
    11941 gacaaccgtg gatcagcgta ttatctagca aaaaacatag agatgacgct ttattatcca
    12001 gaaggtatgg agtttgtaaa cgttgtgaat catggtggta cgcctttaac ggataattcc
    12061 aacctaacta ttactaatta tccaagtgaa aataaggttg tagttgattg taagcaatta
    12121 aatttcaact cagcgaataa ttctatttac ggagtcaaat ataaagtgcc taaaggaacg
    12181 cctgttggaa cttatagcac tgcaaaagcg ccacatgcgg ttatcacaac gtatgatgga
    12241 gaagtattcg aaaccgatgc attaactaac aatactaatg atttaactac tttagctcct
    12301 ctagatactt gtaaagtagt tgatacttcc aataataaaa tgaatttatt ttcagcaaat
    12361 ggaacaatca acccggataa cgaaacttgg gctggtagta tccaaatcga taataaaaga
    12421 acatctggtg tgaagaaaaa tcaaatgtat cacattgaat ttgatcctaa ctgggaagcc
    12481 tacatggtca atatcccttt tgatagcacc atttcagaaa ataaaataac tgatgttcaa
    12541 tataaaacaa atttaaacga cacattccga acgtatgaag gagcgctcac taaaaataat
    12601 aaccaaatgt atcgcttaga tgcaaacgca gtggagcttc aagaaggtga gtatttcaca
    12661 gaagtgaaag cgaatgtggg agacttttca cctggatatc agaatacaga agcctcggct
    12721 acctatcgtt ggaactcaac tgtttcgtac ggaaaagtta agccaggaat tacatcagtt
    12781 caatataaag gttccatttg ggatgctgat gatgaggccg aaacaaaatc ttctgcgaca
    12841 tcaacttata gtgttttaaa tacagaaagt accgcagcaa atggtacggc tgctttctac
    12901 gataaagctg gtaatgtagt aaaaacagct agtccaggag aaaccattaa aacaaaagca
    12961 acattacttt tatcagacta tccttatggg actagaactg tactcaataa tccagaagta
    13021 tatttacgtg ctttagaagg tacaaaagtt ctgccttctt ctattaaact gacagaccaa
    13081 gatgggaaag atgttaattt ctccattcag caggaaacgg caaataatgg agataaggtt
    13141 tatgtattaa agacaacgga tgtttccgta ggggcattta cgggataccc ggctaagagt
    13201 aaatttctaa atatcagtta cgacacaaca tttgatgtaa cattagctaa gagtatcaat
    13261 atggatgcac aagaagtcct tgcatggggc ggccccaatg ttgcttccgc aattgccaat
    13321 aataactttt cagatgtagg tctagatgtt aataaaaatg gcaaagacaa tgaaaaatta
    13381 ctttctgtta acagtagtac tttaagtgtt ccaaaacaag acaccgttgc agtggaaact
    13441 ttcttgagca tagctggaga aggagaaaaa gcagcttata ctgaaggcga tgatagtaca
    13501 gtttcttact tcacaccagg aacagatgct gaatacacag ttcaaatcac taacgcatct
    13561 aatggggaag caaccacttt tgaactttat attccaatcc caaaaactgg tcaaaacttc
    13621 ggagaaaaat tccaaagtga agcatttaag tgggacatga agttaaatag cgcacttgca
    13681 attaatgacg aacagaaaaa tcaatttgaa gtgagctatg caacgcaagc caatgaaaat
    13741 aattatgact caactagtat ttatacagag acagtgtcag attatgaaaa agtaaatatg
    13801 gttcgaatta aagtaaaaac gcaaattaat gctggagaag cacaaacttt caaagttcca
    13861 cttaaagtag acgaaacttt tgattctgcg acggaaggga ataagattgg tgaacgtgat
    13921 gtttacaatc ctttctaccg agtaataacc aatactttct ctggttcatt atcaggaaca
    13981 aaagtagggg ctgaacttgt cattggcgaa gtttcgggaa cattatttaa tgacaaagat
    14041 gttaacggga tttatgaaaa agcaaaaggt gatgaaccat tagctaatga aacagtggag
    14101 ctttataagt ggaatgatgc aacctctaat tatgaacctg ctaagaaagc gggagaaaat
    14161 gtaactacta aaactaatag tgatgggaaa tacagctttg attacaattc tggtgtaggc
    14221 tatggtaatt atgctgtgaa attcccagac aaagcaggtt atcaatttac gttgaaaaat
    14281 gtaggaaaag atgtcacatt agacagtgat gtaccataca gcggtgcaga aaaaggttgg
    14341 aataaagaaa ttgatccaac acaaccaaac gcacaatata tcaatgcggg atactatgct
    14401 tataatccta cgcaagattt aaaagttaac ttaaatgaaa aacaagttca aatgggtcgc
    14461 agcttagaaa tcactttacc aaaagtagct tcaaccactg gacaagctgc cgaagatacc
    14521 attgaaccaa gcttctttaa gaatattaaa gcagcaacaa atggctacaa atggactgtt
    14581 gcagatacca atgtagcgac agtacaaacg ttagctgatg gatcagctgc tgtcgtaggt
    14641 gtttccacaa acaataaaac gattgacgta acggatttaa cgattacaat tcaagatatt
    14701 tttggtacag aacaaagctc cacagctcca gtatatgtta ctggaaccga gggacaggtt
    14761 gcgcaacaag acggttacac tatgggtgcg actgactttt cgatggagta taaagaagcc
    14821 actgaattaa cgaaagctca ggcactaact ctcgcgaaaa cagccgcttt tgaagaagta
    14881 aaagatggtg ttaattcaag cgcagaagat cgtttagatt cagtacaagt gagtcaaaca
    14941 caactagatg caataaaaaa tggttccaac caaggtagtg tgtatccatt aacttactcg
    15001 ataactaaag atagcaaaac tgtctcagta actattcaag taacggtagc gaaagattta
    15061 acagcggtga acgcacatga ttctactatt tatataggag atgcatggga agcaaaagac
    15121 aactttgata gtgcgacaaa taaagaaggt gccactgata tagcgtttag cgatgtgaca
    15181 gttacaggaa gtgtgaatac agcagtagcc ggtgtttatc cagtgaccta cacttacaat
    15241 ggcgtctcta aaaaaattaa tgttactgtc aaagctataa aaacagcagt gaacgcacat
    15301 gattccacaa tctatacagg tgacacatgg aatgcgagag ataactttga tagtgcgctt
    15361 gataaagatg gtaattctgt tgcctttgct gatgtaacag tgacaggaag cgttaataca
    15421 aatgaaactg gtacaaatac tatcacttat agctacgatg gcgtttctca aactattaca
    15481 gttactgttg tagaaaataa agaaggtatc agtgcacatg attctacaat ctatgcagga
    15541 gaatcatgga atgcaaaaga taatttcgac agcgcttttg ataaagatgg gaatgcggtt
    15601 gacctagaag acgttacagt cacagaaaaa ccaaccgttg atacaacaaa agcaggtgct
    15661 tacgaagtca cttacaaata tggaaaagta tcgaaaaaaa tcactttaac agtgaaagct
    15721 aaattaacag cagtcaacgc acatgattcc gcgatttaca tcggagatac gtggagtgca
    15781 gaagataact ttgacagtgc gctggataaa gatggcaatt ctgtcgcttt tgctgatgtc
    15841 gaagttaaag gaaccgttga tacagacaaa gctggaacat atccagtcac gtacacatat
    15901 gacggtgtct caaaaacaat taatatccaa gtaaaagaca tcttaacagc ggtgaacgcg
    15961 catgattctg aaatttatat aggggacaac tggaatgcca aagataattt tgacagtgcc
    16021 caagataaag acggaaacac agtaaattgg aatgaaatca atgtttcgga aaatccagca
    16081 gttgatttag aaacagttgg tgtttaccaa gtgacttata gttatggcgg tgtttcgaag
    16141 acaattaatc tgactgttca tccaagaaaa acaagtctag aagtccatga ctccacaatg
    16201 tatacaggag ataaatggaa agcagaagac aactttgata atgctacaga taaaaaaggt
    16261 gaccaaattc ctttcaaaga tgtaactgta accggacaag ttgattctaa aacagcaggc
    16321 acgtatgaaa taagctatat ctatgatgga ttgaaaaaag tagcacgaat tactgtaatc
    16381 aaaaatcaag cacaaatcac tgtaaaagat agcgtcattc catacggagg aaaatgggaa
    16441 gcagaagcta attttatagg tgcgacaaac cgagatggtg tagcaattcc tttctccaaa
    16501 attaaagtag atggtacagt agatgtaaat aaagctggta cgtacaaagt gatttatacg
    16561 tatgatccga atgaaggaac agcggatgca ggtaagaaag aactttctgt tacagctaat
    16621 attcaagtag aagcagaatt tgtaaaacct ataaaaccag ttgacccatc aaaaccaaca
    16681 gatcctaaaa aaccatcaac agaaaaaaca ccattgaaag tagttgataa caagcaacat
    16741 actgcaacat atgaagcagc aaaaccatta ccaaaaacag gagaccaaac aaataattgg
    16801 gtaatctgga caggcatttg cttgctaagt atgagcatgc ttctatgggt ggtaatgaga
    16861 ggaagaaaga aaaactatca gtaagaggaa ccaacagata aaggaaagac aataagaagg
    16921 taaactaaat accgaccaga tttttctggt cggtattttt ttatcgagaa atatagaagt
    16981 taattgatgt ttttttgagg taatgctact gatttgttaa ttcagtacaa ccaccaaatc
    17041 accattccaa cagtccaaac catcgcaagc ggcactaaaa tccggaactt tggtttttgg
    17101 gttttatggt gaaatagttg catcgacatc cagctaccaa acgccccacc aagaaaagcg
    17161 gtgaaaagc
//
LOCUS       DASDXX010000041        17128 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.041, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000041 DASDXX010000000
VERSION     DASDXX010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17128
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.041"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1435
                     /locus_tag="U0280_001073"
     CDS             <1..1435
                     /locus_tag="U0280_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HEM2271027.1"
                     /translation="FISALSLLIQQLVVDHLHIVGDVYDRGPYPDKIMDTLMNYHSLD
                     FQWGNHDILWMGAASGSRVCAANVIRISARYLNLDILEDSYGISLRPLALFADEVYKD
                     DPCTYFQPKNEENINYSNAEITQIARMHKAISIIQFKLEGEIINRRKEFDMDHRLLLQ
                     FIDYKKGTIHLKGKEYLLLDSHFPTINPEKPYELTDAERELIGKITAAFKNCRRLQKH
                     VQFLYSKGSMFLTYNGNLLYHGCIPLHEDGTFMEMKLRGEKYAGRSLLEQFEILTREA
                     YVRPTGTKEKKYACDIVWYLWTGAISSLFGKSEMTTFERYFVAEKETHTEEKNPYYKL
                     RNNELICKQILEEFGLDGECGHIINGHTPVKEGKGESPIKANGKMLVIDGGFAKAYHK
                     ETNLAGYTLLFNSYGLQLVSHQPFTTKEDAIKNETDILSTRQVIEMEINRKRVRDTDI
                     GAKLSEQAEDLKLLLDAYRNGLLHENR"
     gene            complement(1685..5332)
                     /gene="nifJ"
                     /locus_tag="U0280_001074"
     CDS             complement(1685..5332)
                     /gene="nifJ"
                     /locus_tag="U0280_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEM2271028.1"
                     /translation="MRNRKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWSS
                     KNKKNLFNEPVKVVEMQSEAGAAGTVHGSLQAGALTSTYTASQGLLLMIPNMYKIAGE
                     LLPTVFHVSARTISAASLNIFGDHSDVMAARQTGFAMLAEGSVQEVMDLSAVAHLASL
                     KGSLPFLNFFDGFRTSHELQKVEVLEYDELENLLDKEALQQFRNRAMTPNNPKTLGSN
                     QNPDIFFQQRETVNRYYEEIPNMVQNYMKEINQLRGTDYDLVNYYGAEDATDVIVAMG
                     SVTPVIEQVIDYLTTEGKKVGLLNIRLYRPFPAENFLAKLPKTVERVAVLDRTKEPGS
                     GGEPLLLDVQSVLYDSETRPLVIGGRYGLGSKDVTPDQILGVYSHLTTEKPKPRFTIG
                     ITDDITNLSIENAGPSDLTSEKTFQCKFWGFGSDGTVGANKAAIKIIGDNTDLYAQGY
                     FSYDSKKSGGLTVSHLRFGEKRIRSAYLIQQADFVSCSTSAYLRSYDLLKGLKPGGTF
                     LLNTIWEGEQLERHLPAAMREYIAKNNIQFYTLNAMRIAGEAGLGRRINTVMQTAFFR
                     VTDILPFEKALADLKESAIATYGKKDMAVAEKNILAMDQTVANLHKVEVPASWANPVV
                     TAETNATTEKPAYVQNILEPVNRLEGDNLTVGDLISNGMVSGAYPPGTAAYEKRGIAL
                     EVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTREMRGKDGLRYRIQ
                     VSPMDCTGCNLCAETCPAKDKALVMKPFEEVTAKENPNWSFAINVKPKKNPGKKNTVP
                     GSQFEQPLLEFSGACAGCGETPYVKLLTQMFGDRMMIANATGCSSIWGASAPATPYTV
                     NDKGHGPAWGNSLLEDNAEYGYGMYLANQTMRKALNNKVTKALREEAMSETLREALID
                     WQTQMDVSEDTRERAEALQLALLSEMEGNEALESIYNDRELFIKRSQWMLGGDGWAYD
                     IGFGGIDHVLASGEDVNIFVMDNEVYSNTGGQSSKATPTAAIAKFASGGKSVGKKDLG
                     IMAMSYGNIYVAQIAMGANKRQTLKAIEEAEAYPGPSLIIAYTPCINHGISSGMKTML
                     SETQKAVECGYWSLYRYNPALEEKGKNPMTMDYKKVDFDQFEDFLKRETRYSALYKAN
                     PDVATKLSEKTRLDAEKRFKRYATMAGLDLEKIWKKKEATEDVKAPVDDERAARKAAR
                     EARRLAREQGK"
     gene            complement(5486..7120)
                     /locus_tag="U0280_001075"
     CDS             complement(5486..7120)
                     /locus_tag="U0280_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HEM2271029.1"
                     /translation="MGDINIQQMIFQFIGGLGIFLFGIKYMGDGLQMAAGDRLRDILD
                     KYTTNPFMGVLAGILVTVLIQSSSGTTVLTVGLVSAGFMTLKQAIGVIMGANIGTTVT
                     AFIIGIKLSEYALPIIAAGAVLLFFFKNHKVKNIGQVFFGFGALFYGLDLMGQGMKPL
                     AGMESFHELTAQMSTNPFLGLLIGTIFTAVVQSSSATIGILQELYGQGAIDLQAALPV
                     LFGDNIGTTITAVLAAIGASVAAKRAAATHVIFNLIGAIIFMLILPLFTSLVTYLQGL
                     FGLNPEMTIAVAHGTFNITNTFIQFWFIGAFAWLVTKLIPGDDSRIDYKTKHLDTNLI
                     DQSPGIALEMAREETLRMADYAKFGLQEARQYLVNRESKHAESTIQVEEAVNNLDRKI
                     TEYLTKISSVALTNNETEEHALMLDTVRDIERVGDHMENIVENIDQLIKNKAKMSEEA
                     SDQLIEMFELTTANFERAVKSMHKKDRALAEETILVEKDIDKAERRLRKNHIRRLNEG
                     KCQVVSGILYIDIVSDLERIGDHANNIAESVLELNE"
     gene            complement(7319..8599)
                     /locus_tag="U0280_001076"
     CDS             complement(7319..8599)
                     /locus_tag="U0280_001076"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEM2271030.1"
                     /translation="MNAFDKFYKKTVEERRAILAEYADLNEEEQAFLASTGALSFDKA
                     NHMIENTIGIYSLPLGLGMNMLLNDKHYVVPMVMEEPSVVAAQSAGAKLIGQNGGITG
                     SATKRKMIGQIELISVSDIQAAKENIIANEEQLIAIANQAHPSLQKRGGGAVEIQVRT
                     AQTANDETLLIVHLLVDTQEAMGANMVNTMVETLAPELEMLTNGTANMRILSNLVDEA
                     TATAVCRINPESLATKTQSGEWVRDRIIAAYEFADADIYRAATHNKGIMNGIDAVIMA
                     FGNDWRAVEAASHAYAARTGSYKPMSKWSKDAEGYLVGELTLPMPVAFVGGSIGIHPI
                     ATLSKKIARVESAKELAMLVCAVGLTQNLAALKALVTEGIQRGHMSLQAKSLAMTAGA
                     EADEIEKVATFLQESKQLNVVAAKEFINKLRSGK"
     gene            complement(8640..9608)
                     /locus_tag="U0280_001077"
     CDS             complement(8640..9608)
                     /locus_tag="U0280_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlkZ family DNA glycosylase"
                     /protein_id="HEM2271031.1"
                     /translation="MDAKTIIENRFQSQKLIQTAWSDSPERIVFHFGAMQSQNYGQSL
                     WAVGSRMTTPSEKAVEQAINNGEIIRTWLLRGTIHLFSAKDYHWMMDLIAPSIDKICK
                     PYRAKLGLTDEVLHKATEVVSEIVSEQAVTRKDLAAHLATKDLPSAGIPFAQLLVYLS
                     SRKVICSGPNETFRNTMHIPADTNHFTREEAIKELAKRYIQSHAPATLKDFCFWSGLT
                     VTDAKIGIADMPKMGDYYITTLVENGTMPTTIPLAGFDEWIIGYRDRSVVLPEIWHDE
                     IMTKNGIFRPAIITEGKVVGKWEKPKKRAELDGDFWDRYIQFRNML"
     gene            complement(9687..10511)
                     /locus_tag="U0280_001078"
     CDS             complement(9687..10511)
                     /locus_tag="U0280_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2271032.1"
                     /translation="MNLKDTVKLANGVEMPRLGFGVWKVQDGDEAVNSVKWAIEAGYI
                     SIDTAAAYKNEEGVGQAIKESGVKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELD
                     YVDLYLIHWPVKGKFKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDAEIAPMVN
                     QIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGKLLSNPEIKAIADAHGKSVAQVILR
                     WDLQIGVVTIPKSVHQERIIQNADIFDFELSEEEVAKISGLNKDERTGPDPDNFNF"
     gene            10632..11021
                     /locus_tag="U0280_001079"
     CDS             10632..11021
                     /locus_tag="U0280_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2271033.1"
                     /translation="MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDND
                     ALHWLELLTCLRVTGMPLAKQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDR
                     AFKKIEKKLACYEELEQAVNKSVDQFS"
     gene            complement(11037..11699)
                     /locus_tag="U0280_001080"
     CDS             complement(11037..11699)
                     /locus_tag="U0280_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3153 domain-containing protein"
                     /protein_id="HEM2271034.1"
                     /translation="MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISS
                     VAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEKKLDKNETTKSDMKPEDFGVKIT
                     NSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAK
                     SVDGGKLTWDVPLDKKSEMYFEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKK
                     QL"
     gene            complement(11716..12273)
                     /locus_tag="U0280_001081"
     CDS             complement(11716..12273)
                     /locus_tag="U0280_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271035.1"
                     /translation="MIRHAKKSDAPKIAPLLLVIWKDMELPILEVETEEAITNALIEA
                     IQTEDYRYSYRHLHVYEKDGDIAGVLAGYPGKIEPEIDRAWNEIAKKHGIRYEEPIFA
                     DKETFPGEWYLDSIVTNEKYRGHGVGTALLAKLTEIAAEDGEKVVGLNCDKGNPHAKR
                     LYERLGFHVTGEIILSGHEYEHMQK"
     gene            complement(12383..13231)
                     /locus_tag="U0280_001082"
     CDS             complement(12383..13231)
                     /locus_tag="U0280_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271036.1"
                     /translation="MNETEKLVAALLERNFGKNIGTRYPDNEAAQMRAEEVIGEIAIV
                     IAPLVEKLGIESKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNGTSADTEKYWRDLP
                     TYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLIGEVVEMNEELGADFRIKLVFES
                     DMRIRLRVYDVEQIAIEVHFLDNHDTEQQHLGYDVSLDVDITDKARLLLRQGILTENL
                     GLEALKAYMKSVLPIAHSLKNLEYLTVEDTKKLTKLLTQEEPKIMEDTDLTSKALDFL
                     QKAAQQ"
     gene            complement(13246..15876)
                     /locus_tag="U0280_001083"
     CDS             complement(13246..15876)
                     /locus_tag="U0280_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM2271037.1"
                     /translation="MLWVKESIEQLLSKLHTNLDTGLTKEQVKQKHAEFGTNEFEEGK
                     KESLLQKIGHHLVEITTIVLLFAAAISAYLAITTGYGWAKVVVILGIVVLNMVLGIYQ
                     ENSAEKALAALQSMNAHLTTVVRDGVRMQVDATELVPGDIIEIVAGDMIPADARIISS
                     SSLQVEESALTGESVPVEKDANAVVSEKAPIGDRLNMLYSGCLVTNGRATAVVVEIGM
                     ETEMGKIAGLLNSTSKLMTPLQLRLKELAKRLSIVALLAGILIFIIDVYVYGETIIET
                     LMIAISLAVAAVPETLPVIVTLTLAYGVQNMVRKNTIIRRIPAVETIGNTSVICSDKT
                     GTLTQNKMIIQQIWAADHAPIKATAEFDTAEQKVLEMLSLSSNATIDVTDGEETIIGD
                     PTESSIIRLLEEKGTTKKALEAKYPRVFELPFDSDRKLMTTIHQVEDGFLSITKGAFD
                     RIPVNFSEAFLAEAERVHDSFAEDALRVLVVAYKKYPEMPTDLSSEALETDLTFAGMV
                     GMIDPPRPESKAAVLAAKKAGIKTVMITGDHIVTASAIAKEIGILTDGDKAITGAELA
                     EMSEADLEKNIRDYAVYARVSPEDKIRIVKAWQKNGEIVTMTGDGVNDAPALKAADVG
                     AAMGITGTDVSKNAADMVITDDNFATIVDAVKEGRTAYENIRKTIYFLLSTNFSQIFI
                     MLIAIILGWGAPVVAVQLLLINVVSDGIPGFFLSREKADDSIMERKPIPKNAGIFANG
                     LGKKMATQAVVFTIVTLAGFYIGQFVTINNSIGASYEVGMTMAFVILAWSSVAHIFNV
                     RSDKSIFTIGFLSNRGLFFSAICSMLIILGLAIIPPLANMFFLVEMSLTHWILAFILS
                     MFPLLFVEIQKLIQRKRAKA"
     gene            16101..16514
                     /locus_tag="U0280_001084"
     CDS             16101..16514
                     /locus_tag="U0280_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2271038.1"
                     /translation="MSFAVPYLVFNGEGQDALTFYADVFQAEITSVQRFKEMNNFDGN
                     AVFGERLMHSRLAKNGEEFIYITDAPYDGFTIGNRVTILINFETEEDIKYAYEVLSAT
                     GKVEMELQVAFWGSTYAQVTDQFGVFWQLNFDKKS"
     gene            complement(16538..17044)
                     /locus_tag="U0280_001085"
     CDS             complement(16538..17044)
                     /locus_tag="U0280_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271039.1"
                     /translation="MIKLCTISDSQALLEISYKTFDETFRAQNKPENMDAYLKTNFTA
                     KKLSDELKNTHSYFYFVFHQEAIAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKK
                     GLGKELFNQAIEIAKEVDAERIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFMGDDCQT
                     DIIMIKDL"
     gene            complement(17060..>17128)
                     /locus_tag="U0280_001086"
     CDS             complement(17060..>17128)
                     /locus_tag="U0280_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2271040.1"
                     /translation="KKVKENIADDWLYVKKGNKRSY"
BASE COUNT         4737 a         3667 c         3037 g         5687 t
ORIGIN      
        1 atttattagt gctctctcgt tacttattca acaattggtc gtcgatcatt tgcacattgt
       61 tggtgatgtc tatgatcgtg gtccttatcc agataaaatc atggatacat taatgaatta
      121 ccattcgctc gatttccagt ggggtaatca cgatatttta tggatgggcg cggctagtgg
      181 ttctagggtt tgtgcggcta atgttattcg gatttctgcc cgttatttaa atttagatat
      241 tttagaagat agttacggta tttctcttcg ccccctggcc ctttttgccg acgaagtgta
      301 caaagacgat ccttgtacct acttccagcc caaaaacgaa gaaaatatta actatagtaa
      361 tgcagaaatc acgcaaattg ctaggatgca taaggctatc tcgattattc agtttaaatt
      421 ggaaggtgaa attataaatc gacgcaaaga atttgatatg gatcaccgac ttttacttca
      481 atttatcgat tataaaaaag gcacaattca tctaaaggga aaagaatacc tgttgttaga
      541 cagtcatttt ccaacgatta atccagaaaa accttatgaa ctcactgacg cggagagaga
      601 acttattggg aaaattactg ccgcttttaa aaactgtcgt cgattgcaaa aacatgtaca
      661 atttctatat tcaaaaggca gcatgttttt aacttataat ggtaatttac tctaccatgg
      721 ctgcattcca ctccacgaag atgggacttt tatggaaatg aaattacgtg gcgaaaaata
      781 tgctggtcgt tcgcttttag agcagtttga aatacttacc cgcgaagcat acgtacgtcc
      841 aactggaact aaagaaaaga aatatgcatg tgatatcgtt tggtatttgt ggactggtgc
      901 catttcttcg ctatttggaa aaagtgaaat gactacattt gaacgttatt ttgttgcaga
      961 aaaagaaaca cacacagaag aaaaaaatcc ttactacaaa ttgcgtaata acgaattaat
     1021 ttgcaaacaa attttagaag aatttgggct tgatggtgaa tgtgggcata tcattaacgg
     1081 ccatacgcca gtcaaagaag gaaaaggtga aagtccgatt aaagcgaatg gtaaaatgct
     1141 cgtcatcgat ggcgggttcg caaaggccta tcataaagaa acgaacttag cgggttatac
     1201 actacttttt aatagttacg gtttacaatt agtgagtcat cagccattta ctacaaaaga
     1261 ggatgctatc aaaaatgaaa cggatattct ttccacgcgt caagttattg aaatggaaat
     1321 taaccgtaaa cgtgtaaggg ataccgatat tggggctaaa cttagtgagc aggcagaaga
     1381 tttaaaattg ttactagatg cctatcgtaa tggcttgctt catgaaaacc gttaactaat
     1441 aggtttttaa ttgtcataaa actttcacaa gtcccaaaaa gcttgggctg caacaactaa
     1501 cacttatatg aaaacttatc tcttcatttt tctagtgcat cttctgagaa aaaaagttat
     1561 atttaaatag tagttatttc tttataactc tcataagaga atatctattc attcccacat
     1621 cgcttctgat tcccacagat caaaagcaaa aaagtaggcc tagcatcagc taggcctact
     1681 ttttttattt accttgctcc cgcgctaatc ttcttgcttc acgtgctgct ttccttgctg
     1741 ctcgctcatc atcaacgggc gctttcacat cttcagttgc ttcttttttc ttccatattt
     1801 tctctaaatc aagcccagcc atcgtcgcat agcgtttaaa gcgtttttct gcatctaaac
     1861 gggttttttc ggatagtttt gttgcaacat ctggatttgc tttgtaaagc gctgagtatc
     1921 gtgtttcgcg ttttaggaag tcttcgaatt gatcgaaatc gactttttta taatccattg
     1981 tcattggatt ttttcctttt tcttctagtg ccggattata acggtacaag ctccagtagc
     2041 cacattctac tgctttttgc gtttcactta gcatcgtttt cataccgctt gaaataccgt
     2101 gattaataca cggcgtataa gcaataatta gagatggccc cggatatgcc tctgcttctt
     2161 caatagcttt taaggtttga cgtttattcg cccccatcgc aatttgcgcc acatagatat
     2221 ttccgtaact catcgccata ataccaaggt cttttttgcc gacagatttc ccgcctgaag
     2281 caaatttggc aattgctgcg gttggtgtgg ctttcgatga ttgtccacca gtatttgaat
     2341 atacttcatt atccattacg aaaatattta catcttcgcc tgatgctaac acatgatcaa
     2401 ttccgccgaa gccaatatca taagcccagc cgtcgcctcc aagcatccac tgcgatcgtt
     2461 taataaataa ttctcggtca ttatagatgg attcgagtgc ctcattgcct tccatctcac
     2521 taagaagcgc aagttgtaat gcttctgccc gttcgcgtgt atcttctgaa acgtccattt
     2581 gtgtttgcca gtcaataagc gcctcgcgta acgtttctga catggcttct tctctgagtg
     2641 cttttgtcac tttattattt aaagcttttc gcatggtttg gtttgctaaa tacataccat
     2701 aaccatattc tgcgttatct tctaaaaggg aattgcccca cgccggtcca tgtcctttat
     2761 cattgacagt ataaggcgtt gcaggtgcag atgcgcccca aatagaggaa caaccagttg
     2821 cattagcaat catcatccgg tcgccaaaca tttgcgttaa taatttaaca taaggagttt
     2881 caccgcaacc tgcacaagca ccagagaact ccaataacgg ttgttcaaat tggcttccag
     2941 gtacagtatt tttcttccca gggtttttct tcggtttcac attaatcgca aatgaccaat
     3001 tcggattttc tttagctgtg acttcttcaa atggtttcat tacaagcgct ttatctttcg
     3061 ccggacacgt ttccgcacat aagttacaac cagtgcagtc cattggggaa acttggatac
     3121 ggtaacgaag gccatctttg ccgcgcattt ctcttgtcat aaagccttct ggagcagatt
     3181 ccatttcttc ttcatctgtt aaaattggac gaatggcagc atgcggacaa acaaaggcgc
     3241 attcattaca catcgtacag ttttcagaaa tccattcagg aacttcgagt gcaattccgc
     3301 gtttttcgta agctgcagtc cccggaggat aagccccact gaccatacca ttcgaaatta
     3361 aatcaccaac agtcaagttg tcgccttcta agcgattcac tggctcaagg atattttgta
     3421 cgtaagctgg tttttcagtc gttgcatttg tttctgctgt tacaactgga tttgcccagc
     3481 ttgcaggaac ttctacttta tgcaaattag caacagtttg gtccatcgcg agaatatttt
     3541 tctccgcaac cgccatatct tttttcccat aagtagcgat agccgattct tttaaatcag
     3601 caagtgcttt ttcaaacggt aaaatgtcgg tcactcggaa aaaggccgtt tgcataacgg
     3661 tattaattct tctaccaagt cccgcttctc ctgcaattct cattgcattt aatgtataaa
     3721 attgaatatt atttttcgca atatattcgc gcattgcggc tggcaaatgg cgttctaact
     3781 gttcgccttc ccaaatggta ttgagcaaga atgttccgcc tggttttaaa ccttttaata
     3841 aatcatagga acgtaaatag gccgaggtag agcatgagac aaaatccgct tgttggatta
     3901 gataggctga gcgaattcgt ttttcaccaa agcgcaaatg cgaaacagtt agcccgcccg
     3961 attttttcga atcataggaa aagtaacctt gggcgtataa atcggtgtta tcaccaataa
     4021 ttttaattgc ggctttattc gcgccaacag taccatccga gccaaaaccc cagaatttgc
     4081 attggaaagt tttttctgaa gtgagatcac ttggtccagc attttcgata gatagattcg
     4141 taatatcatc tgtaattcca attgtaaagc gcggttttgg tttttctgtc gttaggtgcg
     4201 aataaacacc gagaatctgg tctggtgtaa catcttttga acctaagcca tatctaccgc
     4261 caataactag tggacgagtt tcactatcat aaagcacact ttgcacgtcg agtaaaagtg
     4321 gttctccgcc tgatccgggt tctttcgtcc ggtctaaaac agccacacgt tctactgttt
     4381 tcggtagttt tgctaaaaag ttttctgctg ggaatggacg atataagcga atattgagta
     4441 atcccacttt cttgccttcc gttgttaagt aatcaataac ttgctcaatg actggcgtta
     4501 ctgagcccat cgccacaatg acatctgttg cgtcttctgc tccataataa ttaactaagt
     4561 cataatccgt gccacgaagc tgattgattt ctttcatata attttgaacc atgttaggga
     4621 tttcctcgta atagcggttc accgtttctc tttgttggaa aaagatatct ggattttgat
     4681 tcgaacctaa agttttagga ttatttggtg tcattgcgcg atttctaaat tgttgtaatg
     4741 cctctttgtc gagcaaattt tctaattcgt catattcgag tacttcgact ttttgtaatt
     4801 catgacttgt gcggaagccg tcaaagaaat ttaaaaatgg caaacttcct tttagtgaag
     4861 ccagatgagc aaccgcggat aagtccatta cttcttgaac ggaaccttct gcaagcatcg
     4921 caaatcctgt ttgacgtgct gccatcacat cactatggtc gccaaaaata tttagcgagg
     4981 ctgctgaaat tgttcttgcg gaaacatgga aaacagttgg caatagttca ccggcaattt
     5041 tgtacatatt aggaatcatt aaaagtaaac cttggctcgc cgtgtatgtg ctagttagcg
     5101 caccagcttg aagtgatccg tgaactgttc ctgctgctcc tgcttctgat tgcatttcta
     5161 ctacttttac aggttcattg aataaatttt tcttgttctt tgatgaccat tcgtccacaa
     5221 gttcagccat ggtggaggaa ggggtaatcg gatagattgc tgcaacttca gtaaaagcat
     5281 aagaaatata agctgctgcc gtgtttccat ccattgtttt tctatttcgc ataagactca
     5341 acacttccag tcattctagt tttataatca ttcttatttt acaccactat ccgcttatac
     5401 tcaatgcttc acaaggacta gtaaaagtgt agatttttaa caaaaaaaag aaaccagacg
     5461 tcaaatagtc tagttccctt tagaattatt cgtttaattc caaaacagat tcagcaatgt
     5521 tgttcgcgtg gtcaccaatt cgttctaaat cactgacgat atcaatgtat agaattccgc
     5581 taacgacttg gcatttgcct tcgtttaagc ggcgaatatg gtttttacgt aatctgcgct
     5641 ctgctttatc aatatctttt tctactaaaa tagtttcttc tgcgagtgcg cgatcttttt
     5701 tatgcatgga tttcactgca cgttcgaaat tcgcggttgt tagctcaaac atttcgatga
     5761 gttgatcaga agcttcttca gacatttttg ctttattctt aatcagttga tcgatgtttt
     5821 ctacgatgtt ttccatgtga tcaccgacgc gttcaatatc acgaacggta tcaagcatta
     5881 gcgcatgttc ttctgtctcg ttgttcgtta gggcgacaga agaaattttc gttaagtact
     5941 cggtgatttt tcggtctaaa ttatttacgg cttcttccac ttgaatagtt gactccgcat
     6001 gcttcgattc ccggttcaca aggtattgtc tcgcttcttg caacccgaat ttcgcgtaat
     6061 ctgccatacg aagcgtttcc tcccgtgcca tttcaagagc gataccagga gattggtcaa
     6121 ttaaattcgt atccaaatgt ttggttttat agtcaattcg cgagtcgtcg ccaggaataa
     6181 gcttcgtaac aagccatgca aatgcgccga taaaccagaa ttgaataaag gtattcgtaa
     6241 tattaaacgt cccgtgcgca accgcaatcg tcatttctgg gtttagtcca aacagtcctt
     6301 gtaggtaggt aaccagagaa gtgaatagcg gtagtatcag cataaaaatg attgcaccga
     6361 ttaaattaaa gataacatgt gtagctgctg cacgtttcgc tgcaacactc gcaccaattg
     6421 ctgcaagaac agctgtaatc gtcgttccaa tgttatcccc gaataggact ggcaaagccg
     6481 cttgaagatc aatcgcacct tgtccgtata attcttgtaa aatcccgatg gtcgcactag
     6541 atgattgtac aactgccgtg aagatcgttc cgattaacaa acctaagaat ggatttgtac
     6601 tcatttgagc agttaattca tggaaagatt ccattccagc aagaggtttc atcccttgcc
     6661 ccatcaaatc tagtccataa aataaggcac caaatccaaa gaatacttgg ccaatatttt
     6721 tgactttatg atttttaaag aagaataaaa gtactgcacc agcagcaatt attggtaaag
     6781 cgtattcgga tagcttaata ccaataataa aggcggtaac ggttgtaccg atgtttgctc
     6841 ccatgataac accaattgct tgttttaacg tcataaatcc agcacttact aatccgaccg
     6901 tcaaaacagt tgtacctgag ctactttgaa ttaatacggt tactaaaatc ccggcaagta
     6961 ctcccataaa aggattcgtt gtgtacttat ctaaaatatc acgaagtctg tcgccggctg
     7021 ccatttgcag tccgtctccc atgtatttta taccgaaaag aaaaattcca agtcctccga
     7081 taaattgaaa aatcatctgc tgaatattta tgtctcccat gaatatctcc tttttgtttg
     7141 taatcttgta atttcactct tttttcatca taaaagaaag taaaagtaac gtaaatacct
     7201 tttttttatt ttgtaaagtg aagtccaagt aaatctctga aagttgttga tactaaaggc
     7261 tttatcacgt tccgaatgta ttgttaagtt tttgtaaagg taggcttaat aatttatttt
     7321 attttccact gcgtaatttg ttaataaatt cttttgcagc aactacattt aattgtttgc
     7381 tttcttgtaa aaatgtggct actttttcga tttcatctgc ttctgcaccg gctgtcatgg
     7441 ctagtgattt cgcttgtagc gacatatgtc cgcgttgaat tccttctgtt acgagtgctt
     7501 ttaaagcagc gagattttgc gttaatccaa cggcacaaac taacatcgct aattccttcg
     7561 ctgattctac tcgagcaatt tttttcgaaa gtgttgcgat tggatggatg ccgatagaac
     7621 ctcctacaaa ggctactggc atcggtaacg ttaattcccc aaccaaatac ccctccgcat
     7681 cttttgacca tttagacatc ggtttatagc ttcctgttct agctgcgtag gcgtgacttg
     7741 ccgcttctac cgcgcgccaa tcgttcccaa acgccataat taccgcatca ataccattca
     7801 ttattccttt attatgggtt gctgctcggt aaatgtctgc atcagcaaat tcatatgcag
     7861 caatgattcg atcacgaacc cattcaccac tctgggtttt ggtcgctaag ctttctggat
     7921 taatccggca aacagccgtt gcggtcgctt catctactaa attagataaa atgcgcatat
     7981 tggctgttcc gttcgtcaac atttctaatt ctggcgctaa ggtttcgacc atcgtattga
     8041 ccatattcgc gcccattgct tcttgggtgt ctacgagtaa atgaacgata agtaacgttt
     8101 cgtcattcgc tgtttgtgct gttctaactt gaatttcaac cgcaccaccg ccacgctttt
     8161 gtaacgatgg atgagcttgg ttagcgatag caattagttg ttcttcgttc gcaatgatgt
     8221 tttcttttgc tgcttggata tcagaaacag aaatcaactc aatctgacca atcatttttc
     8281 gttttgttgc acttccagtt atcccgccat tttgtccaat aagtttcgcc ccagcgcttt
     8341 gggccgccac aacagaaggc tcttccatca ccatcggtac cacataatgt ttatcattta
     8401 aaagcatgtt cattcctaat ccgagcggca gcgaataaat gccaatcgtg ttttcaatca
     8461 tatgattcgc tttatcaaaa gaaagcgccc ctgtagaagc taaaaatgcc tgctcttctt
     8521 catttaagtc ggcatattcc gccaaaattg cacgtcgttc ttctactgtt tttttgtaaa
     8581 atttatcaaa agcattcata gctttatcac ctcaaattaa aatttatcca tctacttgac
     8641 tatagcatat ttcgaaactg gatgtaacgg tcccagaaat ctccgtctaa ttcagcacgt
     8701 ttctttggtt tttcccattt cccgactact ttgccctccg tgataatcgc cggtctgaaa
     8761 atcccatttt tcgtcataat ttcatcgtgc catatttccg gtaaaacgac ggagcgatct
     8821 cggtagccga taatccattc atcgaaacca gcgagtggaa ttgtagttgg cattgtgcca
     8881 ttttcaacca atgttgttat gtaataatcg cccattttag gcatatccgc tattcctatt
     8941 ttggcatcgg tcacagttaa tcccgaccaa aaacaaaaat ctttcaaagt agctggtgca
     9001 tggctttgga tgtatcgttt ggctaattct tttattgctt cttctcgagt gaaatgattc
     9061 gtatcagccg gaatatgcat cgtatttcta aaagtttcat tcgggcctga acaaatgact
     9121 ttccgcgagc ttaaataaac taacagctga gcaaaaggaa tccctgcact cggtaaatct
     9181 ttggtcgcta aatgagccgc caagtctttt ctcgtaacgg cttgttctga aacaatttcc
     9241 gaaacgactt ctgtagcctt atgaagaacc tcatctgtta agcctaattt cgctcggtat
     9301 ggcttacata ttttatctat ggaaggcgca attaaatcca tcatccagtg ataatctttg
     9361 gctgaaaaca agtgaattgt tccgcgcaaa agccatgtcc ggataatttc accattatta
     9421 atcgcttgct ctacagcctt ttcacttggc gtcgtcattc tactcccaac agcccagagc
     9481 gactgaccat agttttgcga ttgcattgct ccaaaatgaa aaacaattct ttccggagag
     9541 tcactccacg cagtttgtat taatttctga ctttgaaagc ggttttctat tattgttttt
     9601 gcgtccatct gttaacctct ttttttagtt tattgtagca taaaaatccc ctccagttcg
     9661 ataagctgga agggattttt tcactattag aaattaaagt tgtctggatc tgggccagtt
     9721 ctttcgtctt tatttaaacc gctgattttt gctacttctt cttcgcttaa ttcgaagtcg
     9781 aaaatatcag cattttggat aatacgttct tggtgaacgg attttggaat agtcacgaca
     9841 ccgatttgta aatcccaacg taagataact tgtgcaactg atttaccatg tgcatcggca
     9901 atcgctttga tttctgggtt agaaagtaat ttcccattac ctagtggaga ccaagcttct
     9961 actacaatgt tgttttcagc acagaattta cgtaatggtt cttgtgttag ttgtgggtgt
    10021 aattcaattt ggtttaccat tggcgcaatt tccgcgtctt ccattaattc ttttaggtga
    10081 tgttcgtgga agttacatac gccgattgcg cgaacgcgtt tatctttata taatttttca
    10141 aaagcgcgcc aagtgtcttt gaatttacct ttgactggcc agtgaattaa atataagtct
    10201 acataatcaa gttctaattt acgtaagctt tcatcaaatg cagccaaagt ggattcataa
    10261 ccttgctccg cattccaaag tttcgttgtt acgaataagt cttctctctt aacgccagac
    10321 tctttaatcg cttgaccaac gccttcttca tttttgtaag cagcagctgt atcaatacta
    10381 atgtaaccag cttcaatcgc ccatttaaca gaatttactg cttcatcgcc gtcctgcact
    10441 ttccatacgc caaatcctaa acggggcatt tctacaccat ttgctagttt tactgtatct
    10501 tttaagttca atttatccgc ctcctaaaag taataacacg tttactatac accttagagt
    10561 atactcaaag gcaaacattt ggcttttcga ttttcaaggt gctattatta agaaaaaaag
    10621 aggtggtttt agtgcaacaa acaatcaaag aagcttctga acacacgggt ttaagcgccc
    10681 atacgattcg ctattatgaa cgagaaggat taatcccttt tctagcacgc gataaaaata
    10741 ataaccgaat ttttgataat gatgcccttc actggcttga attactcacc tgtttacgcg
    10801 tcaccggaat gccccttgcg aaacaaaaag aaattgttga actaactaaa ggcggtgacg
    10861 gtactgtctc cgaacgcatc gctgtactga aagaacatca acaagatatg taccgccggc
    10921 aagcagagct agaccgagca tttaaaaaaa tcgagaaaaa attagcttgt tacgaagagt
    10981 tagaacaagc agtaaataaa agtgtggacc agtttagcta actgatccac acttttttat
    11041 agttgttttt tctttttccg atgtctttta ataagataaa taagtagacc aatgattgcg
    11101 acaagtagaa tcccaccaac aatcgcaatg ttttttacgt ttggtacagt gacttcaaaa
    11161 tacatttcgg attttttgtc gagcggcaca tcccaagtga gcttcccgcc atccacactt
    11221 ttagcattgt tctctccaat tgacgaaatc ggtaaatcca aaataaatgt ataatcaact
    11281 tggcttaaaa tttcttttgg aaacggaaca tccgccactt cttttttcca tatcttttcg
    11341 atgtcaatat cggcatctac tttgattttt tgtgtgaaga aacttttgct attggtaatt
    11401 tttaccccaa aatcttccgg tttcatatcg cttttcgttg tttcattttt atctagtttc
    11461 ttttcgatat gatagcttgt atttgatttt ttatctactg taaatccagc ttctttcagt
    11521 ttagcttcta cttcatccga gtaacttgag gcaaaaatcc ctgctacaga agaaatatcg
    11581 atatcaaagg aaatggtcgc ttcccctttt ttatccactt ttactgtatt ggttacatcg
    11641 gcacatccag caagaattag aactaaactt agtaccactg cgaaaataat ttttttcatt
    11701 ggttggcctc atttcttatt tttgcatatg ttcatattca tgaccgctaa gtatgatttc
    11761 tccagtcaca tgaaatccta gacgttcata aagcctcttg gcatgcggat ttcctttgtc
    11821 acaatttagt cctactactt tttcaccatc ttctgcagca atttctgtta attttgcaag
    11881 aagtgctgtt ccaacaccat gaccgcgata tttttcgttt gtaacgatcg aatctaagta
    11941 ccattcacca ggaaatgttt ctttatcggc aaatattggt tcttcgtatc taatgccgtg
    12001 tttctttgca atctcgttcc aagcgcggtc gatttcaggt tcgattttcc caggatagcc
    12061 tgccaaaact cccgcaatat ccccgtcctt ctcatagaca tgcagatgtc tataactata
    12121 acgataatct tctgtctgaa tcgcttcaat tagcgcattt gtaatcgctt cttccgtctc
    12181 tacttctaaa ataggtaatt ccatatcttt ccatattact agtaaaagtg gtgctatttt
    12241 tggtgcatct gattttttcg catgtcgaat caattttaca tcctcatttc taatttcatt
    12301 gtctcatttt actattcttt ccgccccact tgcaaaaata aaatgctatt aggatcactt
    12361 tcctccaaat agcattttat tcttattgct gtgcagcttt ttgtaagaag tctaatgctt
    12421 tacttgttaa atctgtatct tccataattt taggttcttc ttgcgttaat aatttggtta
    12481 gttttttcgt atcttcaacc gttaaatatt ccaagttttt caagctgtgt gctattggta
    12541 aaactgattt catgtaagct tttagtgctt ccaagcctag attttctgtc aaaatacctt
    12601 gacgtaataa gagccttgct ttatcagtaa tatctacatc taaactcaca tcatagccta
    12661 aatgttgttg ttcggtatca tgattgtcta aaaaatgtac ttcaatggca atctgttcta
    12721 cgtcatacac ccgtaaacga atgcgcatat ctgactcaaa gactagtttt atacgaaaat
    12781 ctgcccctag ctcctcgttc atttctacta cttcccctat aagccaagca tgaaaagcta
    12841 gtagtttttg acgtacttta ttatttttaa tgtgttccaa aacatatggt agcacaattt
    12901 tatttgcatc atctgtccag taagttggta gatctcgcca atatttttct gtatccgcac
    12961 tcgttccatt gactagaaga agcggatacg gataggcact catatcacaa aattgatttt
    13021 tttgaagttc atataaaaat ggaatcgttt ttttcaccgt tttactttcg attccaagtt
    13081 tttcaacaag tggtgcgata acaatagcaa tttctccgat tacttcctcg gcccgcattt
    13141 gcgccgcttc attgtctgga tagcgtgtac caatgttttt accaaagtta cgctctaata
    13201 atgcggctac caatttttct gtttcgttca tatagttgcc ctccttcaag cttttgctct
    13261 ttttcgctga ataagctttt gaatttctac gaataggagt gggaacatcg agaggatgaa
    13321 tgcgagaatc cagtgcgtta agctcatttc tactaagaag aacatgttcg caagtggtgg
    13381 aataatcgca agtcctaaaa taatcaacat cgaacaaatc gcgctaaaga acaaaccacg
    13441 gttagataaa aatccgatag tgaaaatcga tttatcactt cttacattga aaatatgcgc
    13501 gacagatgac catgctagaa taacgaatgc cattgtcatt ccaacttcat agcttgcacc
    13561 aatcgaatta ttaatcgtta caaactgccc gatataaaat cctgcaagtg tcacaatcgt
    13621 aaagacaacc gcttgtgtcg ccattttctt gccaagtcca ttcgcaaaga tccctgcatt
    13681 ttttggaatt ggcttacgct ccataatcga gtcatctgcc ttttcacgac ttaagaagaa
    13741 gcctggaatc ccatcagaca caacgttgat taatagcaac tgaacagcta caaccggcgc
    13801 gccccagcca agaataatcg caattaacat aatgaaaatt tgagaaaagt ttgtacttag
    13861 taaaaagtaa atcgttttgc ggatattctc ataggctgta cgcccttctt tgactgcatc
    13921 tacaatcgtt gcaaaattat cgtctgttat aaccatatct gcagcgtttt tagatacatc
    13981 tgttccggta attcccattg cagcaccaac atccgctgct tttagagccg gtgcatcatt
    14041 tacaccatca cctgtcatcg tgacaatttc accatttttc tgccaagctt taacgattcg
    14101 aattttatct tctggactaa cacgcgcata taccgcataa tctcgaatgt ttttctccaa
    14161 atcagcttct gacatttcag caagctctgc tccagtaatc gctttgtccc catccgttag
    14221 aataccaatt tcttttgcaa ttgctgatgc cgttacaata tggtcaccag taatcattac
    14281 agtcttaata cccgcttttt tcgccgctaa cacagccgct ttactttccg gtctcggtgg
    14341 gtcaatcatc ccgaccattc ccgcgaacgt taagtctgtc tcaagcgcct cactagacaa
    14401 gtctgtcggc atttccggat attttttata ggcaacaact aacacccgaa gtgcatcctc
    14461 cgcaaaactg tcatgcaccc gctccgcttc cgctaaaaac gcctcggaaa agtttacggg
    14521 aattcggtca aaagcacctt ttgtaatgga aagaaatccg tcttctactt ggtgaattgt
    14581 cgtcattagc tttctatctg agtcaaaagg aagttcgaac acgcgtggat atttggcttc
    14641 caatgctttt ttcgttgttc ctttttcttc tagtaaacgg ataatcgagc tttcggttgg
    14701 gtcaccaatg atggtttctt cgccgtctgt tacatcaatc gtcgcgttac tggaaaggct
    14761 caacatttct aatacttttt gttctgcagt atcaaattca gctgttgctt ttatcggtgc
    14821 gtggtctgct gcccaaattt gttggataat cattttattt tgcgttaatg ttcctgtttt
    14881 atcagaacaa ataacagacg tatttccgat tgtttctact gcaggaattc ggcggataat
    14941 cgtatttttc cgcaccatat tttgaacgcc gtaagcaagt gtcaatgtca caataactgg
    15001 caatgtctca ggaactgctg ctacagctag agaaatcgcg atcatcaacg tttcaataat
    15061 cgtttcaccg taaacatata catcaatgat aaaaattaaa atacctgcta aaagtgctac
    15121 aatactaagt cgttttgcta attcttttaa gcgaagttgt aaaggcgtca tcagttttga
    15181 ggtgctgttt aaaagtccag caattttccc catctctgtt tccatcccaa tttctacgac
    15241 aaccgccgtg gcgcgcccat tcgttacaag gcagcctgag taaagcatat tcagacggtc
    15301 gccaattggc gctttttccg aaacaaccgc atttgcgtct ttttcaactg gaacactctc
    15361 accagttaac gcagattcct cgacttgcaa actgctacta gaaataatcc gtgcatctgc
    15421 tggaatcata tctcctgcaa caatttcaat aatatcccct ggtactaatt ccgttgcgtc
    15481 cacttgcatc cgcacaccat cacgaacgac cgtagttaaa tgcgcattca tactttgaag
    15541 tgccgcaagt gctttctcgg cgctgttttc ctggtaaatg ccgagcacca tattcaacac
    15601 gacaattcct aaaataacaa ccactttcgc ccaaccataa ccagtcgtaa tcgctaaata
    15661 agcggaaatc gccgctgcaa aaagcaacac aatcgtcgta atttcaacta aatggtgacc
    15721 aattttttga agaagtgatt ctttcttccc ctcttcaaat tcattcgttc cgaactctgc
    15781 atgtttttgt ttcacttgtt ctttcgttaa ccctgtgtct aaattcgtgt gtagtttgct
    15841 gagaagttgc tcaattgact cttttaccca aagcatacat ctacctccta cgcacctact
    15901 cccaaaagca agtacttact ttattttatt gcaaaaaaat attaatttaa atatatccga
    15961 tttcttagtg taattgtata atatatcacg tttatttgca agtattttgt ttttattcac
    16021 aaatccttat tattttgaga catgacttcg cagtagatta ggcttatact aaagctatta
    16081 attgtatagg agatgatgag atgtcttttg cagttccata cttagttttt aacggagaag
    16141 gtcaagatgc gctaacattt tatgcggatg tgtttcaggc tgagattaca agcgttcagc
    16201 gttttaaaga gatgaacaat tttgatggca atgccgtttt tggtgagcga ttgatgcata
    16261 gtcgtttagc aaaaaatggg gaagaattta tttatattac cgatgcgcct tatgatggtt
    16321 ttacaattgg caatcgggtg acaatcttga ttaactttga aacagaggag gatattaagt
    16381 acgcctatga agttttgagt gctacgggca aagtggaaat ggagttgcaa gtggcgttct
    16441 ggggttcgac ctatgcgcag gtgacggacc agtttggggt gttttggcag cttaattttg
    16501 ataaaaaaag ttgagcttag tatgcgctca acttttttta taaatctttt atcataataa
    16561 tatcagtttg acaatcatcg cccatgaaaa aatcatgttg tccattttta ataaaaccca
    16621 gctttgcata aaattgaata gcgttcttat tcttttccca aacacctaac catattcttt
    16681 ctgcatcaac ttctttcgct atctctattg cttgattaaa taactcttta cctaatccct
    16741 ttttttggaa tgacttcaat acataaatac gctctatttc gattgtattc ccagctattt
    16801 cttctgtttg agcatctcct atatttagtt ttaaataacc agcaatagct tcttggtgaa
    16861 aaacaaaata aaaataggaa tgtgtgtttt ttagttcatc gcttaatttt ttagccgtaa
    16921 aatttgtttt taaatatgca tccatgtttt ctggtttatt ttgcgctctg aatgtttcat
    16981 caaatgtctt ataacttatt tctaagagtg cttgggaatc acttattgta cataatttta
    17041 tcattacttt tcctccaaat taataacttc ttttattgcc ttttttaaca tataaccagt
    17101 catctgcaat attttctttg accttctt
//
LOCUS       DASDXX010000042        17081 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.042, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000042 DASDXX010000000
VERSION     DASDXX010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17081
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.042"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..411)
                     /locus_tag="U0280_001087"
     CDS             complement(<1..411)
                     /locus_tag="U0280_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM2271041.1"
                     /translation="MTKAIWTCRAFLLGYFLVLHFTADTYTFLILNVGLAYIPFEIAV
                     FLTKKPRVWWIFWPLGIVWLVFFPNAPYLLTDLLHLQRLEIYGAEGILSTAPWLWRHF
                     TYIIVGVFFGLFIGFWSFAKMLAEIRRRFNWTSLL"
     gene            complement(467..1474)
                     /locus_tag="U0280_001088"
     CDS             complement(467..1474)
                     /locus_tag="U0280_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HEM2271042.1"
                     /translation="MSQILFKTKTFWYGIALTFCIATLSYFLAKLPFLMILGQLVTAI
                     LIGIIIRALFPVPEKWFTGIQFSNKVILRAGIILLGFRLNLVDIYHAGWRVFLIAALC
                     LSFGITIVYFLAKLFGVDKKLAILVACGTGICGAAAVVAISPQVKADNNQTAVAATII
                     ALLGTIFTVIYTLIYPILPLGPDGYGIFAGATLHEIAHVIAAADPGGSSAVDMAVIVK
                     LTRVALLVPVCFVVAKMVNAGTKNRFSWAELPVPWFIFGFLATSAINSFGIIPTSVTD
                     FLVICAYFLIAMSMGGLGLNVHLPSFGKMGGKPFAAALIGSVFLSAFGLALVLLFHLA
                     G"
     gene            1580..2434
                     /locus_tag="U0280_001089"
     CDS             1580..2434
                     /locus_tag="U0280_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2271043.1"
                     /translation="MDEALRTYIRVVELQSFTKAAEELHISQPAVSLQLKKLEEIYET
                     ELIYRQAKKFILTATGEILYHRAKQLEGLYKQVEDEISLYHHHLKGRLRIGASFTIGE
                     YFLPEVIAKFHALYPDITIELIIENTAKIADKVELLQVDTGLIEGQVSKKDLEISAFS
                     DDEMCIVGRADGSLTEIEQGATWIAREEGSGTREYLDHVLSTNGWNVAEKVVAWSNMA
                     VKQMVLEGMGYTVISKCVVQTEITSGKLQTFNEAGSLMRKFSVLKNRQRLENRIAETF
                     LTFLKENQ"
     gene            2503..3519
                     /locus_tag="U0280_001090"
     CDS             2503..3519
                     /locus_tag="U0280_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HEM2271044.1"
                     /translation="MKEYFIDRSYKASMGIANAVLVTLGIGLLLQTIGQMTGISFLVT
                     VGAIGKTMLIPGIGVGIAMCLHANTLVTISAAASAVIGGGAVATLAGGGVAITSGEPV
                     GAILAVIVAVWTGKRVTGKTKFDMILIPGVSLLAGGLSGILFAKIMAPILASVSLGIS
                     SLIGGSPLISSMVIAFVFGLLILSPASSAALAIALQLDPTASAAALIGCSVQFVSFAV
                     LSYRDNNWGAFFAQLICTPKLQTPNIIRKPSLMLVPLLTTLIAGPLGVMVFHIQAASE
                     VAGLGLCAFVAPLYLIANYGFSTLAAFILVAVVLPGVIALIVRPFLIKKERLKTGDLT
                     IELQ"
     gene            3634..4368
                     /locus_tag="U0280_001091"
     CDS             3634..4368
                     /locus_tag="U0280_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271045.1"
                     /translation="MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLC
                     ELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDWEEAEDEHFTLVRSFTNEMKELG
                     KKAATLHAEVEVINADKKIALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDY
                     SLKAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTK
                     QKESDFREYSECFYIGKHYRYYIDFE"
     gene            complement(4407..6149)
                     /locus_tag="U0280_001092"
     CDS             complement(4407..6149)
                     /locus_tag="U0280_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HEM2271046.1"
                     /translation="MTTYDLAPEVKIHQFDGAWAGYKDIATELRTAIQKKKQDQTIVA
                     IECYPGTRNEEIAAELLPLLPVEKVVFADDWALNNEEVTATIQSHLTDDRVFGIMSHY
                     EVSDFYPAEKLAEIQAEIAATKGLVVVYGTGATVIAPTPDILIYADLARWEIQCRYRG
                     ENKPNWKADNAGEDALRKFKRGYFFEWRMADRQKKKLYQQVDFLLDTNKKNEPKMVRG
                     EDYRNGLNQVSKAPFRVVPYFDASVWGGQWMKNNFGLDPAADNYGWAFDGVPEENSLY
                     MRFGDIRIEVPSTNVVNHFPNELLGPKVHSRFGTEFPIRFDYLDTVGGGNLSLQVHPL
                     VEYAQDKFGIHYTQDESYYILEADNDSTVYLGTKEGTTKEAIMTDLEKAAEGNYRFPD
                     EKYINVFPVKKHDHILIPAGTIHCGGPSTVVLEISATPYIFTFKLWDWERTGLDGMPR
                     PVHLEHGRENLQLDRDTKWVKDNLINQFETLHEDNDSKVERTGLHELEFIETHRHWFK
                     ETVTVHTNDSVNMLNLVEGESAVVESIDDSFAPFEVHYGETFIVPAIVGTYQIRNTSD
                     NEEVAVIQAFVRNL"
     gene            6363..7028
                     /locus_tag="U0280_001093"
     CDS             6363..7028
                     /locus_tag="U0280_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271047.1"
                     /translation="MEKSGFVADPIYGEIKNEIMANTLENGEKVDIEDIMKRFQVSKR
                     VAFSALHCLHKSGIVCKNIGESGFSVAVNSEAEHREKSRLKLAFFHLNYAVQKLQEQD
                     AEVCATCLRKELVYIKLAAKEQDTDVFINHVKNFYACMIHYTEMPAMEKNIDILSQTL
                     RNMKEKNEKLFFEAFTIDVSQALEDLVTHLEAKEFEKCHSVIQHFYDKNISILFSESK
                     NPE"
     gene            complement(7618..8091)
                     /locus_tag="U0280_001094"
     CDS             complement(7618..8091)
                     /locus_tag="U0280_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271048.1"
                     /translation="MQIRLSKREDAASMIELEHLVWTPGTTPGSIHFDSEAEFLLKSP
                     PGSKIVVVADDKVVGILGYKSPIPLATNKHVAEIDIAVHPDYQRAGIGQLLMDKMKEV
                     AREKGFIKIALRVLSINQKAIRFYEKNGFKLEGRLEKEFIIQGEFVDDILMAYFL"
     gene            complement(8108..9343)
                     /locus_tag="U0280_001095"
     CDS             complement(8108..9343)
                     /locus_tag="U0280_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271049.1"
                     /translation="MSKFWVITKQVYKRRVKTKSFLISLLFPVLIAALIAGIPKMVDY
                     FDSSSDITKLAVLAEDPVFAKSLAADKNHFKVNTDIKDKKSAQSALKDGKIDGFVTIT
                     QEDDSVSAVYTTQETAGQDTITRLTEDLTATKIAEKAAAYKITNEQLQSITSPVSVTN
                     DLESNNQLTNHEKDVMSAAVLILTLVIFIFVMSYANIVASEIATEKGTRIMEVILSSV
                     SATTHLFAKLTAIIFMLLTQIGFYIVCGAIVLIAGRNTEMVQNVLDQIAVFPAYYLVL
                     NLLFVILGLLLYILLAAMIGSMVPNVETVAQFIYPMTILAIIGYWGSIAAANAPDNML
                     VIIGSYIPTFSPMMMLARMDLLSVSTIGIFSSLAILLASVVGAFFLTVRLYQGNVLLY
                     SNDGLWKTWKTSLSYAKRK"
     gene            complement(9336..10238)
                     /locus_tag="U0280_001096"
     CDS             complement(9336..10238)
                     /locus_tag="U0280_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271050.1"
                     /translation="MTLELHNVTKKFGTKVAVNDLSFRVEPGKILGLIGQNGAGKTTT
                     FRLILHFLEATSGKITWDGKEVSKIDPNIIGYLPEERGLYPNVTIEEQLIFFAELKGY
                     PKQKIKAEIDSWLERAEIVGKKTDLIKTLSKGNQQKIQLLSTIIHQPKLVILDEPFSG
                     LDPVNAEILKKFVFDLRASGAAIIFSSHRMENVEELCDSLLMLKKGNVVLQGTTESVK
                     AVFGRKRILIESSHSAAELATLPGVLNVQTHRDGVLQLEIENESDAEKIFEYVTKDGF
                     IQTFSLQAPTLEEIFKWKAGELNE"
     gene            10434..11891
                     /locus_tag="U0280_001097"
     CDS             10434..11891
                     /locus_tag="U0280_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM2271051.1"
                     /translation="MLLTKSEHALINLFLTKNDFLTAKQLAEILDVSSKTIYRKIKNI
                     NETTGRKDIIISEKGRGFKLDYKAYIQAKLETTGDIFGYTPTERREKILLQVLFKSPK
                     YLNVTELYEDYYVGYNSIKNDFSLLNQAIEKYDLALEKRQKEIRVVGTEENIRTAINE
                     VINNLDLSTYDDLKTEYSDLNKADVQFIVRQMELIENKLMISIPYPYDINIFSHLYIL
                     INRFRQGEVEDFKESDDAYIVTNEKLHTIAVEAIDAIEQYLKMKLPERETFHFLQYLI
                     SSRFNHEIELVPGKILPIVEEMTDFYIEQVAAKINMPINKKQLKIELLSHMKPMVNRM
                     NHQINIKNNLLSDIKLEYGRLFEIIKETANDVAKTFKLNTISDDEVGYITIYFAKHME
                     ASPLVKRIIIMCSSGIGTSELLKVKVQKAFPDVEIVDVLSSTRFKNNLQDYQNIDFIL
                     TTINAESTKEIPSLLVSAMFTEKDKIMVKKLMESL"
     gene            11903..12376
                     /locus_tag="U0280_001098"
     CDS             11903..12376
                     /locus_tag="U0280_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2271052.1"
                     /translation="MDIQDLDISKVISPALVNLDLQATSKLEVIEELTDLLVETGAVA
                     DKDAFIADVLYREEEGKTGLGEGVAIPHGKSASVTSTSIAVGRTKKPVEWESLDDKPV
                     NIIILFAVKNSDATTTHIKLLQKVAILLADDEVIGQFQTVKTKEDLIKLLAKNQD"
     gene            12389..12700
                     /locus_tag="U0280_001099"
     CDS             12389..12700
                     /locus_tag="U0280_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HEM2271053.1"
                     /translation="MNIIGIAACTSGIAHTYIAKEKLTKAGTALGHNVHIETQGTIGI
                     EDELSAEQVKNADVVIIAADIKISGKDRFKGKRVVEIPTDLAIKAPKQIINKIDKEIN
                     N"
     gene            12717..13811
                     /locus_tag="U0280_001100"
     CDS             12717..13811
                     /locus_tag="U0280_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HEM2271054.1"
                     /translation="MKKLQIKKHALTAISYMLPLVVASGLLIAIGNLTNGQVIENYKA
                     PYSIPDALVSLGVLGMGLLAPVIAGAIAYSIADRPGIAPGLLMGLIANSIGAGFLGGM
                     LGGYLVGYFVLILVKYLKVPKWAQGLMPMMIIPLISSLVVGLLMYFVVGVPIVWATEA
                     MTSFLQGMQGSMRFVFGAVLGAMAAFDFGGPVNKVASLFADGLLLEGVKEPEAVKILA
                     SMVPPFGVTLSWVVSKLIKKKKYTKSEEDNIKIAFPMGICMITEGVIPIAAVDPIRVI
                     ISCTLGAAVGGGLSMTWGIGSPVPSGGMFIVPAMNEPLLFCLALLIGTCVTAAMLLIL
                     KREPTKEEELIADQGLEEEDEVDLSGIKIS"
     gene            13829..14683
                     /locus_tag="U0280_001101"
     CDS             13829..14683
                     /locus_tag="U0280_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase family
                     protein"
                     /protein_id="HEM2271055.1"
                     /translation="MYVSMKGMLERANKEHYAVMAINCFNLETARAVIDAAQELRAPI
                     IIDLLQDHLTSHLGSRFLTKPIIKMAEEASVEVAINLDHGHDVAIVKQCLADGFSSVM
                     MDASSFPYEENVAITKKMVEFAEVYHASVEAEVGNIGAVTGDNYTNQEMYTDPKVAID
                     FAKRTGIDALAISYGSSHGDYPEGFTPAFQFDIVREIKSATNMPLVLHGGSGCGAENI
                     RESVRLGINKINVGSDFMKAQVNQIKTNLKENPAVNYVDLIHETIKAGTKAVKNYIQL
                     SGSTGKSL"
     gene            14700..15599
                     /locus_tag="U0280_001102"
     CDS             14700..15599
                     /locus_tag="U0280_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketose-bisphosphate aldolase"
                     /protein_id="HEM2271056.1"
                     /translation="MLVNMKQLLEVAKENKFAVGAFNVADSNFLRVVVEEAEKNNAPA
                     IIAVHPTELDFTKDDFFQYVLARIKNSPVPFVLHLDHGDNMGDVMRAVRCGFSSVMID
                     GSLLPFEENIRVTKEVVDVCHKLGVSVEGELGTIGKTGNSIEGGVSEIIYTKPEEAEE
                     YISRTGVDTLAVAIGTAHGIYPKDKEPKLRLDILKEIKDLVNIPLVLHGGSANPEAEI
                     AAAVEIGIQKVNISSDYKYAFYKKCREILSTTELWDANAIYPDCIDAAKEVVKYKMEL
                     FESIGQVEKYQQAKTTAWRSELI"
     gene            complement(15629..16339)
                     /locus_tag="U0280_001103"
     CDS             complement(15629..16339)
                     /locus_tag="U0280_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271057.1"
                     /translation="MYLKETLDQFASIDNILKLLKKNPSFNKHCIQERLPQKTIITSN
                     KQRKHIYIIEEGFMKLIFDDNKPRDFSYILSKGAFPFLPVYTEDIPEHTMMVALTDIV
                     WWKIDISFFKGMMETEDPRNYLMLHQLAETRRRFYTIAYQEKLTSRESIYYSLSTMIE
                     FGLRISEKIVELPEFLTYQILADHANTSKSYTSKVLGHLREEGILESQRKPWRINDVQ
                     KLQKLIEMNVPLVKIQKN"
     gene            16818..>17081
                     /locus_tag="U0280_001104"
     CDS             16818..>17081
                     /locus_tag="U0280_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271058.1"
                     /translation="MQSVFEDLYSKKILEEEFGYTCFLQTLIDNRIPYKKTRIPSNMI
                     LLTEDTINTKVYFIEKGIVSLEKNKNVISFLGSNQIAGLNDYFM"
BASE COUNT         5517 a         2962 c         3436 g         5166 t
ORIGIN      
        1 tagtaaacta gtccaattaa atcgtcttct tatttctgca agcatttttg cgaaagacca
       61 gaatccaata aataatccaa agaacacacc gacgataata taagtgaaat gtcgccataa
      121 ccaaggtgct gttgaaagta ttccttctgc cccgtatatt tctaaacgtt gtaaatgaag
      181 taaatcagtt aaaagatacg gtgcatttgg gaaaaatact agccaaacaa tacctagtgg
      241 ccaaaaaatc caccagacgc gaggtttttt tgtgagaaat actgctattt cgaaaggtat
      301 ataagcaagc ccgacattta aaattagaaa agtgtaagta tctgcagtga aatgcagcac
      361 aagaaagtat ccgagtaaga acgctcggca agtccaaatt gctttcgtca tgaaatagtc
      421 acctcgtgtt tgctattgta tcacaaatcg aggtgacgag gacatcttaa cctgctaaat
      481 gaaacaaaag tactaaagct agaccaaatg cggaaaggaa aacagaaccg attaacgccg
      541 cagcaaaagg ttttccaccc atttttccga acgatggcaa gtggacattt aaaccgagtc
      601 cgcccattga catagcaatg aggaaatatg cgcagatgac aagaaaatca gttacagatg
      661 ttggaataat tccaaagctg ttaattgcac tagttgctaa aaagccgaaa ataaaccaag
      721 gtacaggaag ttcagcccaa gaaaaacggt ttttagttcc agcattaacc atttttgcaa
      781 caacaaagca gactggaaca agtaaggcta cacgtgttaa tttaacaata accgccatat
      841 caacagctga tgagccgcct ggatctgcag ctgcaataac gtgggcaatt tcatgaagtg
      901 tagcccctgc aaaaatccca taaccgtctg gtccaagtgg cagaattgga taaatcaacg
      961 tatagataac agtgaaaata gttccaagta atgcaataat tgtagcagcc acagccgttt
     1021 ggttattatc agcttttact tgtggagaaa ttgcaactac tgcagcagca ccacaaatcc
     1081 ctgtaccaca agcgaccaaa atagctagtt ttttatccac tccaaaaagt ttggctaaga
     1141 aataaacaat agtaatacca aagctaaggc ataaggcagc aatgagaaac acgcgccagc
     1201 cagcatgata aatatcaact aagttcaagc gaaaaccaag taaaataatc ccagcacgaa
     1261 gaattacctt gttggaaaac tgaataccag taaaccattt ttcaggaact gggaaaagtg
     1321 cacgaatgat aataccaatt aaaatagcag ttacaagttg tccgagaatc attaaaaaag
     1381 gcaacttcgc taaaaaataa gataaggtag caatacagaa agtaagcgca ataccatacc
     1441 aaaaagtctt cgttttaaat aaaatttgac tcatgttcat ccccctttct tttatacttt
     1501 tactttacca ttcttgattt tattagtaaa atttatatta attatattat tgataagtta
     1561 tttttatgga ggtgttacta tggatgaggc attaagaaca tatatccgag tagtagaatt
     1621 gcaaagtttt acaaaagcag ctgaagaatt acacatttcg caacccgctg tatcgttgca
     1681 attaaagaaa ttagaagaga tttatgaaac agagcttatt tacaggcagg ctaaaaagtt
     1741 tattttaaca gcaacaggag aaattttata tcaccgtgcc aagcaattag aaggtctata
     1801 taaacaagtg gaagatgaaa taagtttata tcaccatcat ttaaaaggtc gacttcgaat
     1861 tggtgctagt tttacgatag gagagtattt tttgccagaa gtgattgcga aatttcatgc
     1921 cctttatccg gatattacaa tagaactaat cattgaaaat accgcgaaaa ttgctgacaa
     1981 agtggaactt cttcaagtgg acacagggct tattgaaggc caggtaagta agaaagattt
     2041 ggagataagt gctttttcgg atgatgagat gtgtatcgtt ggtcgagcag acggttcact
     2101 taccgaaatc gaacaaggag caacttggat tgcgcgagaa gaaggctcag gaacgcgtga
     2161 atatttggat catgtattaa gtaccaatgg ctggaatgtt gctgaaaaag ttgttgcttg
     2221 gagtaatatg gcggtcaaac aaatggttct tgaaggaatg ggctacaccg ttatttctaa
     2281 gtgtgttgtt caaacagaaa ttacatcagg aaaactgcag acgtttaatg aggctggtag
     2341 cttaatgcgg aagttttcgg tactaaaaaa cagacaaaga cttgaaaatc gaattgctga
     2401 aaccttttta acatttttaa aggaaaacca gtaaataaaa ctagcttttt aattaactag
     2461 tgattacaat gagaaagaat acattttaga aagggagaag caatgaaaga atattttata
     2521 gatcgttcct ataaggcttc tatggggatt gcgaatgcgg ttcttgtaac gcttggaatt
     2581 ggacttcttt tacagacaat tgggcagatg acagggattt catttcttgt aacggttgga
     2641 gcaattggta aaacgatgtt aattccggga attggtgttg gtattgcgat gtgcttgcac
     2701 gcgaatacgc ttgtgacgat aagtgcggca gcctctgctg ttattggtgg tggggcagtg
     2761 gcgacgttag ctggtggcgg agttgctatt actagcggag aaccagtcgg agctattttg
     2821 gctgttattg tggcagtttg gactgggaag cgagtcactg gaaagacgaa atttgatatg
     2881 attttgattc ccggtgtttc acttttagct ggcggactaa gcggtatttt atttgcaaag
     2941 attatggcgc cgattttagc ttctgtaagt cttggaatta gttcattaat tggtggttcg
     3001 ccgctgattt catcgatggt tattgctttt gtgtttggat tactgatact tagcccagct
     3061 tcttctgctg cgctcgcgat tgcgcttcaa cttgatccaa cagcaagtgc tgcggcgttg
     3121 attggttgct cggttcaatt cgtgtcattc gcggtgttaa gttatcggga taataactgg
     3181 ggtgcatttt ttgcccaact tatctgtaca cctaaattac aaacacctaa tattattaga
     3241 aagcctagcc tcatgttagt accactatta acaacactaa ttgctggacc tcttggtgtg
     3301 atggtatttc acattcaagc cgcaagtgaa gttgcaggcc ttggcttatg cgcctttgtt
     3361 gcacctcttt atttaatagc aaattacgga ttcagcacac ttgctgcttt tattttggta
     3421 gcagttgtct tgccaggtgt tattgcactt attgtcagac cgtttcttat taaaaaggaa
     3481 cgcctcaaaa caggtgattt aacgattgag ttgcagtaga atagtttaaa aagtagggct
     3541 taatagctct actttttata ttggaatttt ggataagctt atgctatgat tcattgtgat
     3601 gacaataata caatttgaga aggaaggctt actatggtga gaaagttaaa taaaatgtac
     3661 gatgcatctc cgctctatgc gcaaatagct gatgatttac gagaaaaaat ccaaacagaa
     3721 gtttggcaaa ctggagataa aattccacca gagcttgatt tatgtgagtt atacaatgtc
     3781 agtagaatta ccgttcgaaa agcaattgat gaactcgttc gtgagaattt actttataga
     3841 gagcgcgcga aaggtacttt tgtacgtgac tgggaagaag cagaggatga gcattttacg
     3901 ttagtgcgca gttttacgaa tgagatgaaa gaacttggta aaaaggcggc tacgctacat
     3961 gcggaagtag aagtgatcaa tgccgataaa aaaattgcgt tacagctagg gctttctgtc
     4021 ggggacaagg tgctacaaat taagcggcta cgcggtacga aagacttggc atttgcttta
     4081 tttatcagtt ttattcctta taatcaagat tactcactta aagcagaaga ttattacggt
     4141 tctttttatg aatatttgaa aggcttcggt attgtcgtga atcaagaaaa ggaatatatt
     4201 gaagcgatgt tgcctaatcg tgaagtacag gaagcgctcg caatcgacaa acaagaacca
     4261 attttgaaaa gggtgcggat gacgaaacaa aaagaaagtg attttagaga atacagcgaa
     4321 tgtttttata taggaaagca ttatcgctat tatattgatt ttgaataaaa gaaagcctat
     4381 caaaaatatt gataggcatt tcttttttat aaattacgta caaaagcttg aataacagcc
     4441 acttcttcat tatcgctcgt atttctgatt tgataagttc cgacaatcgc aggaacgata
     4501 aatgtttctc cataatgcac ttcaaacggt gcgaaagagt cgtcaatact ttcaacgaca
     4561 gcactttctc cttctaccaa attgagcata ttgacgctat cgtttgtatg gacggtaacc
     4621 gtttctttaa accagtggcg gtgggtttca ataaattcta attcatgcaa accagtgcgc
     4681 tctacttttg aatcgttatc ttcatgtaat gtttcaaatt ggtttattaa gttgtctttt
     4741 acccatttgg tgtcgcggtc aagctgtaaa ttttctctgc cgtgctctaa atgaacaggg
     4801 cgaggcatgc catcgagtcc agtgcgttcc cagtcccata atttaaacgt gaagatataa
     4861 ggagttgcac taatttctag gacgacggta cttggaccac cacaatgaat cgtcccagct
     4921 ggaattaaaa tatggtcatg tttttttaca gggaagacat taatatattt ttcatcggga
     4981 aaacggtaat ttccttcagc ggctttttct aaatctgtca taatcgcttc ttttgttgta
     5041 ccttcttttg ttccaagata cacggtagag tcgttatctg cttctaaaat ataataactt
     5101 tcatcttggg tataatggat accgaactta tcttgcgcat actctactaa tggatggact
     5161 tgcagactta aattccctcc acccactgta tcgagatagt cgaaacgaat cgggaattcc
     5221 gtaccgaaac ggctatgtac ttttggccca agtaattcat tcggaaaatg gtttactaca
     5281 ttggtagacg gaacttcaat ccgaatatct ccaaatcgca tgtataaact attttcttct
     5341 ggaacgccgt caaatgccca gccgtaatta tcagctgcag gatcaagccc aaagttattc
     5401 ttcatccact gacctcccca tacacttgca tcaaagtaag gaactactct aaaaggggcc
     5461 ttggaaactt gattcaagcc atttcgataa tcttctccgc gcaccatttt tggctcattt
     5521 tttttattgg tatcaagtaa gaaatctact tgttgataaa gctttttctt ttgccgatca
     5581 gccatgcgcc actcgaagaa ataaccacgc ttgaacttac gaagcgcatc ttcaccggca
     5641 ttgtctgctt tccagttagg tttattttct ccgcggtagc ggcactgaat ctcccatcga
     5701 gctaaatcag cataaataag aatgtctggt gttggtgcta taacagttgc gccagtcccg
     5761 taaaccacaa ctaacccttt agtagcagca atttccgctt gaatttcagc aagtttttct
     5821 gctggataaa agtcgctcac ttcatagtgg gacataatgc cgaacacccg gtcatctgtt
     5881 aagtgagatt ggattgtagc tgttacttct tcattgttta atgcccaatc atctgcaaaa
     5941 accacttttt cgactggtaa taatggaagt agttcggcag caatttcttc atttcgtgtt
     6001 ccggggtaac attcaatcgc aacgatagtt tggtcttgct tctttttttg aatagccgtt
     6061 cttagttctg tagcaatatc tttgtaaccc gcccaagcac catcaaattg gtggattttc
     6121 acttcgggtg ctaaatcgta cgtggtcaaa acaatcactc cttgattata ttgttattac
     6181 aatataaata tagcattgta tatctatttt gtcattacaa tctattgtct atttttgtta
     6241 taacaataca atcgtttttg taacgtaatg gacacatttt ttcgcaaaaa gccatatcta
     6301 aatggaaaaa tttcgtgtaa aatataacat tgaaagcaat aaaaaataaa gaggttcgaa
     6361 ttatggaaaa aagtggattt gttgcagatc cgatttatgg agaaatcaag aatgagataa
     6421 tggccaatac gttggaaaat ggcgagaaag tggacataga agacatcatg aaacgatttc
     6481 aagtcagcaa acgagtagct tttagtgcgc tccattgttt acataagagt ggtattgtgt
     6541 gcaaaaacat tggggaaagc ggtttttcag tcgccgtgaa tagtgaagct gagcatcgcg
     6601 aaaaatcacg attaaagtta gctttttttc atctaaatta tgctgtacaa aaactacaag
     6661 aacaagacgc agaagtatgc gcaacatgcc ttcgtaagga gttagtttat ataaaactag
     6721 ctgctaagga gcaagacaca gatgtattta taaatcacgt gaaaaacttt tatgcttgca
     6781 tgattcacta tacagaaatg ccggcgatgg agaaaaatat cgatatactg agtcaaacgc
     6841 tgcgaaatat gaaagaaaag aatgaaaagc tatttttcga agcttttacg atagatgttt
     6901 cgcaggccct ggaagacttg gtaacgcatc tagaagcgaa agaatttgaa aaatgccact
     6961 cagtcattca acacttttat gataagaata tctctatctt gttttcagaa tcaaaaaacc
     7021 ccgaatgacg atttcgtcac gcggggtttt tcttttcgga tgagcttgtc ttgccactca
     7081 tctgatgggc cggaccatgt ctggatgttt ctgaataaac atacaacatt cggaaaacgg
     7141 tgaggcattt tcaaacaagt aggcgaattc tttgtcttgc tacttacttc tcaagatatt
     7201 ctagcttacg aataaatgag cgcccgtaac ttgcttaaat agtggccata aatgatacga
     7261 tactttattc gcttatttac caatgtagtg aggataaaaa tattgataaa cgagcgacgt
     7321 aacgaaattc cgtcttccta caactaagtt agcgtaaagt ccttgacgcg gcgtatactc
     7381 ctcgccttcc tcctgtaagc taaccgtagc tgcttgacac taaaatcctt caccagacgt
     7441 tttgccggca tatgacaaag ctgagaaaaa aatcagcttg tacaccaagt ttgtttcatt
     7501 cgcatcacct tttatttgtt cgttgtactt tatatataac cgttctaaat aaatgtaaac
     7561 gctttatttg taaaatgatt ataaagtcac agtttgaatt ttaagccagg ccttttgtca
     7621 gaggaaataa gccattaaaa tatcatccac aaattcgcct tgaataatga attctttttc
     7681 taggcgtcct tccagtttaa aaccattttt ttcatagaaa cgaatggctt tttgattgat
     7741 ggatagaaca cgcaaggcaa ttttaatgaa acctttttcg cgtgccactt ccttcatttt
     7801 gtccattaaa agttgaccaa tgcccgcgcg ttggtagtct ggatgtacag cgatatcaat
     7861 ttctgcgacg tgtttattgg ttgcgagtgg gataggagac ttataaccaa gaatcccgac
     7921 tactttatca tccgccacga caacaatttt ggaaccgggt gggcttttaa gtaaaaattc
     7981 ggcttcacta tcaaaatgga tacttccagg tgttgttcct ggcgtccaaa ctaaatgttc
     8041 taattcaatc attgaagcgg catcttctcg tttagatagt ctaatttgca taatttacca
     8101 actttcctta ttttcttttt gcgtaagata gcgaggtttt ccaagttttc cataaaccgt
     8161 cattgctgta aagtagcaca tttccttgat aaagacgaac tgtgaggaag aatgcaccaa
     8221 caacgcttgc gagtaaaata gcgagggagc taaagatgcc gatagtcgaa acggaaagta
     8281 agtccattcg ggctagcatc atcattggcg agaatgtcgg aatatacgaa ccgatgataa
     8341 ctaacatatt atctggcgcg ttcgctgctg caatggatcc ccagtagccg ataattgcaa
     8401 gaattgtcat tggataaata aactgggcta cagtttcgac attcgggacc atcgaaccaa
     8461 tcattgctgc gagtaaaatg tacaacaaca aacctaaaat aacaaatagt aaatttagca
     8521 caaggtagta cgctgggaaa acagcaattt gatctaagac attttgaacc atttcggtgt
     8581 ttctgccagc aatcaggacg atagctccac aaacgatgta aaacccaatt tgtgttaaaa
     8641 gcataaaaat tatcgcagtc aatttggcaa ataagtgagt tgtcgcagaa acactggaca
     8701 aaatgacttc catgatgcgc gtgccttttt ctgtagctat ttcagaagca acaatgtttg
     8761 cataactcat cacgaaaata aaaataacta gtgttaaaat caggacagcg gcgctcatca
     8821 catctttttc gtggtttgtt aactgattgt tggattctaa atcattggtt accgaaacag
     8881 gagatgtaat agattgcaat tgttcattgg tgattttata agcggccgct ttttcagcga
     8941 ttttggtagc tgtaaggtct tcggttaaac gtgtaatagt atcttgacca gctgtttctt
     9001 gcgttgtata aacggcactt actgaatcat cttcctgtgt aatcgtgaca aatccgtcta
     9061 tcttaccgtc tttcagagca gactgggcgg attttttgtc tttaatgtcc gtatttactt
     9121 tgaaatgatt tttatcagca gccaaagatt tggcaaaaac agggtcttct gcaagtaccg
     9181 caagctttgt aatatcacta cttgagtcaa aatagtcgac cattttcgga ataccagcga
     9241 tgagcgcggc gattaaaacg ggaaaaagta gtgaaattaa aaatgatttt gttttcacgc
     9301 gtcttttgta aacttgcttc gtaatcaccc aaaatttact catttagctc accagccttc
     9361 catttgaaaa tttcttcgag cgtcggagct tggagactaa acgtttgaat gaaaccatct
     9421 tttgtcacat attcaaaaat tttctctgcg tcactttcat tttcaatttc aagttgcaga
     9481 accccgtcgc ggtgggtttg aacatttaaa acacctggta aagtagcgag ttctgctgca
     9541 ctatggctag attcaatcaa aatacgttta cgaccaaaaa ccgcttttac agattccgtt
     9601 gttccttgga ggaccacatt tccttttttt aacattaata gcgagtcgca aagttcctcc
     9661 acattctcca tccgatgact agaaaaaata atagcagccc ctgaagcgcg taagtcaaat
     9721 acaaactttt tgagaatttc tgcattgact gggtctaacc cgctgaatgg ttcatctaag
     9781 ataactagtt ttggttggtg aataattgta cttaaaagct gaattttttg ttgattgcct
     9841 ttggatagtg ttttgatcaa gtctgttttt ttaccgacaa tttcagcgcg ttctagccag
     9901 ctatcaattt ctgcctttat tttttgtttt ggatatcctt ttaattcagc aaaaaatatt
     9961 aattgttctt caattgtgac atttggatat aaaccacgtt cttcgggcaa ataaccgata
    10021 atatttggat cgattttgct tacttctttg ccgtcccaag tgatttttcc agaagtagct
    10081 tctaaaaaat gcaaaataag gcgaaaagta gttgttttac cagcgccatt ttgaccaatt
    10141 aatccgagta tttttcctgg ttctactcga aacgataaat cattgacagc gacttttgtt
    10201 ccaaattttt tcgtaacatt atgtagttca agcgtcacac gagcacccct ttctaattgt
    10261 tccctgtttt tattatacgg ttttattgga ggattgtctt gctaaaagta aagagctacg
    10321 acgacgactt ttttcacaaa ctcagccaaa aaattgtcta gtgtagtgga cataacttgt
    10381 tgtaaccgtt ttcttttatt tgtgtataat agagcgtaga gggaggtgat gaaatgcttc
    10441 taaccaaatc ggagcatgca ttaattaact tgttcttaac gaaaaacgat tttttgacag
    10501 caaagcaatt agctgaaatt ctagacgttt cctctaaaac gatttatcgc aagattaaaa
    10561 acatcaatga gacaactgga agaaaggata tcatcatttc tgaaaagggg cgtggtttta
    10621 agttagatta taaagcttac atacaagcta aattagaaac gacaggtgat atttttggct
    10681 atacaccaac agaaagacgt gaaaaaatct tgctgcaagt attgtttaaa tcaccaaagt
    10741 acttgaatgt aacagagctg tatgaagatt attatgttgg gtataattca atcaaaaatg
    10801 atttctctct tttaaatcaa gccatcgaga aatatgattt ggctcttgaa aaaaggcaaa
    10861 aagaaatacg ggttgttggc actgaagaaa acatccggac cgccattaat gaagtgatta
    10921 acaacttgga tttatcgacc tatgatgatt tgaaaacaga atacagtgat ctcaataaag
    10981 ctgacgttca gtttattgtg cggcaaatgg agttgattga gaacaagctg atgattagca
    11041 ttccgtatcc gtatgatatt aatatctttt cacatttgta tattttaatc aaccgtttcc
    11101 gtcaagggga agtagaagat tttaaagaaa gtgatgatgc ttatatcgtc acaaatgaaa
    11161 aattgcatac gattgctgta gaagccattg atgcaattga acaatatttg aaaatgaagc
    11221 taccggagag agagactttc cattttttac aatacttgat ttcttctcgt tttaaccatg
    11281 aaatcgaatt agttccaggt aaaattttac cgattgtgga agaaatgact gatttttata
    11341 ttgaacaagt ggctgctaaa attaatatgc cgattaataa aaagcaatta aagatcgagc
    11401 tattgagcca tatgaagcca atggtcaacc gaatgaatca tcaaattaat ataaagaata
    11461 atttgttaag cgacatcaaa ttagagtatg gcagactatt tgaaatcatc aaagaaactg
    11521 caaatgatgt agcaaaaacc tttaaattaa acacaatttc tgatgatgaa gttggctata
    11581 ttaccatata ttttgcgaaa cacatggaag cgtctcctct agtcaaacga attatcatta
    11641 tgtgttcaag cggcatcggg acgtcagaac ttttaaaagt aaaggttcaa aaagcttttc
    11701 cagatgttga aatagtagac gttttatcat ctacaagatt caaaaataac ttgcaagact
    11761 atcagaatat tgattttatt ctaacaacaa ttaatgcaga aagtacaaaa gaaatcccat
    11821 cgttacttgt aagtgcgatg tttaccgaga aagataaaat aatggtaaaa aaactgatgg
    11881 aaagtttata ggaggcgaat tcatggatat ccaagattta gatattagta aagtaataag
    11941 cccagcactt gtaaatttag acttacaagc tacaagtaaa ttagaagtca ttgaagagtt
    12001 aacagattta cttgttgaaa ctggggcagt agcagacaaa gatgctttta tagcagatgt
    12061 attatatcgc gaagaagaag gcaaaacggg actaggagaa ggagtcgcta ttccacacgg
    12121 gaagtcggcg agcgttacga gtacatccat tgccgttgga agaactaaaa aacctgttga
    12181 gtgggagtcg cttgatgata aaccagtaaa tattattatt cttttcgcag tgaaaaattc
    12241 agatgctaca acaactcata ttaaattact tcaaaaagta gcaatcttac ttgcggacga
    12301 tgaggtgatt ggccaatttc aaactgtaaa gacaaaagaa gatttaatta agttgttagc
    12361 caaaaatcag gattaggagg agtttggaat gaatattatt ggaatagcag cttgtacatc
    12421 gggaatcgca catacgtata ttgctaaaga aaaactaaca aaagcaggga cagcgcttgg
    12481 tcacaacgtt catattgaaa cacaaggaac aattggtatc gaagacgagc tttcagcaga
    12541 acaagtgaaa aatgccgatg tagttattat tgctgccgat attaaaatta gcggaaagga
    12601 tcgttttaaa ggaaaacgag ttgtcgaaat tccaacagac ctagcgatta aagcaccaaa
    12661 acaaattatt aataaaatag acaaagaaat aaataactag ggagtgaacc ggtatgatga
    12721 aaaaactgca aatcaaaaaa catgcactta cagcgatttc gtatatgtta ccgttagttg
    12781 ttgcctcggg gttacttatt gccattggaa atttaacaaa tggacaagtt attgaaaact
    12841 acaaagcacc ttattcgatt ccagatgcac ttgtctctct cggtgtgctt ggtatgggac
    12901 tgcttgctcc agttattgct ggtgcgattg cctattcgat agcagatagg ccgggaattg
    12961 cgccagggtt acttatggga cttatcgcca attcaatcgg tgctggattt ttaggcggaa
    13021 tgcttggagg atacttagtc ggttattttg tacttattct tgtgaaatat ttaaaagtgc
    13081 caaaatgggc gcaaggttta atgccaatga tgattattcc gcttattagt agtttagtcg
    13141 tcgggcttct gatgtacttt gttgtagggg ttccaatcgt ttgggccacg gaggcgatga
    13201 caagcttctt acaaggcatg caaggcagta tgcgctttgt tttcggagct gtacttggag
    13261 ctatggcagc atttgacttt ggtggacctg taaataaagt ggcctcctta ttcgcagatg
    13321 ggctccttct tgaaggcgtc aaagaaccag aagcagtaaa aattcttgct tcgatggttc
    13381 cgccattcgg ggtgaccctt tcatgggtag tttccaaatt aattaaaaag aaaaaataca
    13441 cgaagtcaga agaagacaat atcaaaattg ctttcccgat ggggatttgt atgattacag
    13501 aaggtgttat tcccattgca gcggttgacc ccattcgcgt tattatttct tgtacacttg
    13561 gtgcggcagt cggcggaggt cttagtatga cttggggaat tggctcacca gttccatcag
    13621 gcggaatgtt tatcgtccca gcaatgaatg aaccactctt attctgttta gcattattaa
    13681 ttggtacttg tgtcacagca gccatgttac tcatcttgaa acgagaacct actaaagaag
    13741 aagaactcat tgctgaccaa ggattagaag aggaagatga agttgatctg tctggaatta
    13801 aaatttcata aggtgaggag attttgaaat gtatgtgtcc atgaaaggta tgttagaacg
    13861 tgcgaacaag gagcattatg cagtaatggc aattaattgt tttaatctgg aaacggctcg
    13921 tgcagtcatt gatgctgcac aagaacttcg tgcgccgatt atcattgatt tacttcaaga
    13981 tcatttgaca agtcatctag gaagtcgctt tttgacaaaa cccattataa aaatggcaga
    14041 agaagcgagt gttgaagtgg caattaattt ggatcacggg catgatgtgg cgatagtgaa
    14101 gcaatgctta gcggatggtt tttctagtgt gatgatggat gcgtctagtt ttccttatga
    14161 agaaaacgtt gcaattacga aaaaaatggt cgagtttgca gaagtttatc atgctagtgt
    14221 cgaggcggaa gttggtaata ttggtgcggt gactggagat aattacacca atcaagaaat
    14281 gtataccgac cccaaagtgg ccatcgattt tgctaaacga acagggattg acgctttagc
    14341 aatttcttat ggttcttccc atggtgatta tccagaaggt tttacaccgg ctttccagtt
    14401 tgatattgtc agagaaatca aatccgcgac aaacatgccg ctcgttttgc acggaggttc
    14461 tggttgcggg gcggaaaata ttcgagaatc cgttcgactg ggcatcaata aaatcaatgt
    14521 tggctccgac ttcatgaaag cacaagtaaa tcaaataaaa acgaatttaa aagaaaatcc
    14581 ggccgttaac tatgtggact taattcatga aacgataaaa gccggcacaa aagctgttaa
    14641 aaattatatt caactatccg gttcaaccgg aaaatcactt taaaaggaga aatgaaaata
    14701 tgttagtaaa tatgaaacaa ttattagaag tagctaagga aaacaaattc gcggtgggag
    14761 catttaatgt tgcagacagt aactttttac gggtggtagt agaagaagct gaaaaaaaca
    14821 atgctccagc aattattgca gtgcatccaa cagaattaga ttttacgaaa gatgactttt
    14881 tccaatatgt tcttgcaaga attaaaaata gtcctgttcc atttgttctt catttggatc
    14941 atggtgacaa tatgggagat gtgatgcgag cggtacgttg tggttttagt tcagtgatga
    15001 ttgatggctc tttgcttcct tttgaagaaa atattcgtgt tacaaaggaa gttgttgatg
    15061 tttgtcataa actgggggtc tcagttgaag gtgagctcgg gactatcggg aaaaccggta
    15121 acagtattga aggcggcgtc agtgagatta tctatacaaa acccgaagaa gcggaagaat
    15181 atattagtcg cacgggtgta gatacgctag ctgttgcaat cgggacagcg cacggaattt
    15241 atcctaaaga taaggagcca aaattacgtc tagatatctt aaaagaaata aaagatttag
    15301 tgaatattcc acttgtactt cacggtggtt ctgcaaatcc agaagccgaa attgctgcag
    15361 ctgtcgaaat tggaattcaa aaagtaaata tttccagcga ttacaaatac gccttttata
    15421 agaaatgtcg tgagattcta agtacaacag aactttggga tgccaacgca atctacccag
    15481 actgtattga tgcggcgaaa gaagtggtga aatataagat ggaacttttt gagtctattg
    15541 gtcaagttga aaaataccaa caagcaaaaa ccacagcttg gcgaagtgaa ctaatctaac
    15601 aaaaaaaact aagagcgcaa gttggctctt agtttttttg tatctttaca agtggtacat
    15661 tcatctctat taacttttgg agcttctgga catcgttaat tcgccaaggc tttctttgtg
    15721 attccaaaat gccttcttct cgtaaatgtc ctagaacttt agacgtgtag cttttagaag
    15781 tattagcatg atcagcaagt atttgataag ttaaaaattc tggaagttct actatttttt
    15841 cggagatacg taggccaaat tcaatcattg tacttaaaga ataataaata ctttcacgtg
    15901 aagtcaattt ttcttgataa gcgatagtgt aaaatcttct tctagtttcc gctaattgat
    15961 gaagcatgag ataatttcgc ggatcttccg tctccatcat ccccttaaag aaactgatat
    16021 caattttcca ccatacaata tctgtaagag caaccatcat tgtgtgttca ggtatatcct
    16081 ctgtataaac tggcaaaaag ggaaatgctc ctttagacaa aatataagaa aaatcacgcg
    16141 gtttgttgtc atcaaatatt agtttcataa aaccttcttc tattatatag atatgttttc
    16201 gttgtttatt ggatgtgata attgtttttt gtgggagccg ctcttgaatg cagtgcttat
    16261 taaaactcgg atttttcttg agcagtttaa gaatattatc tatcgaagca aattgatcta
    16321 acgtttcttt taaatacata ccattccccc ctatgtcatt agtttcccgc aatataagcg
    16381 cataaaactt attcttctag tagaatattt ttgcgtaaac ataagcgggg aagaataaaa
    16441 acaggaatta ataactttca caaataatac aaaatatcgc gataatcatt aaaaaataga
    16501 ggttattctt ctaaaaaggt agttagaaag atactatttt cactaaaatg ttgcttgaaa
    16561 tttttggata gaaaagtaga gggaatgtgc ttcgtcttat aatagaagta tcaaaagaaa
    16621 cttatacaat aatttataaa gtgaataaaa ttcaattgtg acaaaaaagt caaaaatagt
    16681 tggttaaagc aggaagtttt gtttttttgt tgggttcctt ttaaaagtgt ttggtagtat
    16741 catcacttgt aagaagccac tcatcgcatt ataaaactat ttgctaacaa cataaaatag
    16801 aaatgagatc acaataaatg caatccgtat ttgaagattt gtatagtaaa aaaattttgg
    16861 aagaagaatt tggttataca tgcttcttgc aaactttaat cgataacaga atcccttata
    16921 aaaaaacaag gataccgagc aacatgattt tactaacaga ggatacaata aatacaaagg
    16981 tttattttat tgaaaaaggg atagtttcat tagagaagaa taaaaatgtt ataagttttt
    17041 tgggatcaaa ccaaattgct ggattgaatg attattttat g
//
LOCUS       DASDXX010000043        16984 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.043, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000043 DASDXX010000000
VERSION     DASDXX010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16984
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.043"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..546
                     /gene="pepC"
                     /locus_tag="U0280_001105"
     CDS             <1..546
                     /gene="pepC"
                     /locus_tag="U0280_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM2271059.1"
                     /translation="INAPTKDKPFNQAFTVEYLGNIVNGTPIKYLNVEMDVLKKAAAD
                     QIKDGETVWFGCDVGQLSERNTGIMDTDIFLLNQTFGFKTAMTKAERLDYKHSMLTHA
                     MVLTGVNIANGEVNRWKVENSWGEKIGNNGYFVASDAWMDEFTFQVVVHKKYLSKELI
                     ESFNQKPIVLKPWDPMGSLAL"
     gene            complement(543..986)
                     /locus_tag="U0280_001106"
     CDS             complement(543..986)
                     /locus_tag="U0280_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 domain-containing protein"
                     /protein_id="HEM2271060.1"
                     /translation="MIAVSACLAGIACRYDGKDKEITKIKQMVERGEAIPFCPEVTGG
                     LPTPRNPAEIIGGDGKDVWLGHAKVIDNKGTDVTEEYKNGARLTLIKMQELGITQIIM
                     KEKSPSCGSCAIYDGTFSGKIKDGTGVAAALFQMNGIKIISEFAF"
     gene            complement(1067..1978)
                     /locus_tag="U0280_001107"
     CDS             complement(1067..1978)
                     /locus_tag="U0280_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HEM2271061.1"
                     /translation="MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEMARD
                     VEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRDIGYLIATKQLG
                     ATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKS
                     ILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTLRADAPEVIAESLKAKWDL
                     QIKGGAVITNPIPEEFAMDEKVINDVIQTALKEAEENHIHGKDVTPFLLGKVKELTDG
                     KSLEANIELVKHNALIGTQIAVAYQNI"
     gene            complement(1975..3093)
                     /locus_tag="U0280_001108"
     CDS             complement(1975..3093)
                     /locus_tag="U0280_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2271062.1"
                     /translation="MENNKAKMNEKEEIIFNSIRKNPYISQQELADILDLSRPTVANL
                     ISGLIKKGRILGKAYILNEAKQIVCIGGANVDRKFYIKDKAQLATSNPVRSTQSAGGV
                     ARNVGENLGRLGKEVILLTACGTDSDWEAVKNASNTYMNLDYVTAFPSIATGSYTAVL
                     ENNGDLLVALADMDAYDHLTPDVLAKNEGLLSQASAIIADLNCPKETLEYLGSFAEIN
                     SIPLVLVPVSSPKMSHLPERLDHVTWLICNRDESETHLGMTIKNDEDWRLAAQKWLDL
                     GVKNVIVTNGSKGAVAANKGEGTIFEPAIVIENIVDVTGAGDAFCSAVIYAWLEGKAL
                     KEILRAGSVNAARTLESEYTVRQNLSTSQLQKDMEEFK"
     gene            complement(3226..3927)
                     /locus_tag="U0280_001109"
     CDS             complement(3226..3927)
                     /locus_tag="U0280_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM2271063.1"
                     /translation="MRLDKLLSHTGFGSRKEVKPLLKSGAVVVNGTIQKDSKTQVNPD
                     KDQVTVHGTPVVYQEFVYFMLHKPQNVVSATEDNVSETVIDLLAQEDTLTDPFPVGRL
                     DKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTLADVEAFAAGIELDDGYT
                     CKPARLEIITPNEINVTIQEGKFHQVKRMFAARGKKVSYLKRISMGNLQLDESLGLGE
                     YRPLTESELAILQNK"
     gene            complement(4001..5323)
                     /locus_tag="U0280_001110"
     CDS             complement(4001..5323)
                     /locus_tag="U0280_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM2271064.1"
                     /translation="MTRKETIQFGAIIHGVGGTTDGWRHPDINPAASTDLDFYKTRAK
                     IAEQGLFSFVFIADGLFISEKSIPHFLNRFEPITILSALAESTENIGLVGTFSTSFTE
                     PFTLARQLSSLDHISGGRAGWNLVTSPQEGAARNHSKKNLPTHSDRYTIAAEHLKVVR
                     GLWSSWEEDAFTYNKETGEFFNPEKLHRLNHQGEYFQVEGPLNIGRSKQGEPVVFQAG
                     ASSTGRDFAAKNAEAIFTHSDSLEEAIEFYQDVKARAEKAGRNADEVRIFPGISPIVA
                     DTLEEAEAKYTEFASLIPIENAVTYLARYFDDYDLSQFDLDAPFPDLGDIGKNAFQST
                     TDRIKKEAKERHLTLRQVATEAATPKTPFIGTKEQVADLIDVWFQNDAADGFIIASDI
                     PGTFETFVEQVIPLLQSRGLYRNEYPATTLRGNLGLTIPQNKQVVETK"
     gene            complement(5320..5586)
                     /locus_tag="U0280_001111"
     CDS             complement(5320..5586)
                     /locus_tag="U0280_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEM2271065.1"
                     /translation="MANVVVWSKVGCHYCKDVKDYLTEQKIVFQDIDVTDHDYLREVL
                     QAKYGIRYVPVVEIGDIEKGTYQAVTEIGLEHLEKALFEKEEVK"
     gene            complement(5579..6574)
                     /locus_tag="U0280_001112"
     CDS             complement(5579..6574)
                     /locus_tag="U0280_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM2271066.1"
                     /translation="MTIRFSILDQSIINPGEKPSEALQNTVELAQLAEQLGYHRFWVA
                     EHHNSDEIAGAAPEVLLGYIAAKTSTIKLASGGIMLQHYSPYKVAEQFHVLENLAPGR
                     MSLGVGKAPGGFQPATDALQKDFVKPTRTFDAKLKELVDFVTHHSEVAIAAKPLPENK
                     PEIFLLGGSAASAKQAAKLGISFVFAYFINGEEAVLKEARELFEQYRINTKASFQLAP
                     IVVVAETKIAADRHIPERESIKVELADGRRVNVGSREQAESYVKDINQTYRFITQRIG
                     AITGTKQEVGAEIKRLSKEYNIQDFVVLTPVKSTEIKRYSYQLLSESIKEEVVHG"
     gene            complement(6571..7350)
                     /locus_tag="U0280_001113"
     CDS             complement(6571..7350)
                     /locus_tag="U0280_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2271067.1"
                     /translation="MITIKNIQKSFGENKVLKGIDLTVKKGEVVTILGPSGSGKTTFL
                     RCLNLLERPENGEISMHDQIINCKKPSKKEVLQLRKNTAMVFQQYNLFSHKTVIQNVM
                     EGLTVARKMPKKIAREIAERELTKVGLADKFSAYPSQLSGGQKQRVGIARALAINPDV
                     ILFDEPTAALDPELVGEVLEVMLEIARAGATMIVVTHEMEFAKRVADQVVFMDGGLIV
                     EQGTPDEVFNHTKEERTKRFLHRVSADYLYEIKEVKKERVI"
     gene            complement(7347..8054)
                     /locus_tag="U0280_001114"
     CDS             complement(7347..8054)
                     /locus_tag="U0280_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM2271068.1"
                     /translation="MPLDVPFIGTAVMAMLKTIPLTLAMTFFPILFGFIIAIGMTLIR
                     MYHVRFLEPIAKFYVSFFRSTPAILHIMLIYLGIPLLVDFLSKSFGLGISANKIPVVI
                     FVIIALSFTAGAYLTEILRSGIIAVDIGQMEAAYSVGYTHGQAIRKVLLPQAFMIALP
                     NFTNLCIGFLHTTSIAAIVAVPEITGMATIVASDNYAFLEAFIGAALIYWFLTILIEA
                     INYILEKNIAKYRGGTV"
     gene            complement(8068..8784)
                     /locus_tag="U0280_001115"
     CDS             complement(8068..8784)
                     /locus_tag="U0280_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM2271069.1"
                     /translation="MDKAFDVKMIADFIPTLAGYLPITLYILALSLIFGFILGVLLSL
                     PRIYKIPVLDQLARVYISFFRGTPIMVQLFIVFYGIPALSSIVGIDLSQMDPLYAAIA
                     TYALSSAATIAEVIRAGVNSVDAGQAEAAYSIGLSSRQTFLRIILPQALYQALPNFGN
                     LVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYYLTAVLLEYSFKW
                     IEKRVKKENTRFTSIFDIEL"
     gene            complement(8806..9615)
                     /locus_tag="U0280_001116"
     CDS             complement(8806..9615)
                     /locus_tag="U0280_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2271070.1"
                     /translation="MKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQ
                     FPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQ
                     MEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLK
                     KINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDV
                     LSNAKVYFMLGKDETKLSKDVDEALQSIIDDGTLKKLSEKWLGADYSKEQY"
     gene            complement(9632..10168)
                     /locus_tag="U0280_001117"
     CDS             complement(9632..10168)
                     /locus_tag="U0280_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271071.1"
                     /translation="MTEDIFRVATVDDAPEFLELLSSAFQSVKELGIDWPSTNADLAM
                     VTENIVNSSAFVLERNGKLISTITVRFPWESSSPPSKYPFVWWFATAPELAGQGIGDK
                     LLTYVEERVLRDTLKAPALTLGTSARKHPWLLDMYLRRGYEVYFEHEEDGDVGVMMRK
                     ILIPEKFDATLLGIPSWT"
     gene            complement(10184..10729)
                     /gene="ssuE"
                     /locus_tag="U0280_001118"
     CDS             complement(10184..10729)
                     /gene="ssuE"
                     /locus_tag="U0280_001118"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HEM2271072.1"
                     /translation="MGKVTIIAGGIKTESRLTGLTQLAANELVTNGLEVNIIEVHKIN
                     AEALVTADFAHSDIQLANSEIESSSGVIIATPIFKAAYSGVLKAYLDLLPLKALKGKV
                     VLPLGLGGSNGHLLALQYALDPVLKELGAETILKGQFTVDKQIERFGDGLYEIESSAK
                     ERLDIALNQFISLLNQQSVEV"
     gene            10972..11871
                     /locus_tag="U0280_001119"
     CDS             10972..11871
                     /locus_tag="U0280_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2271073.1"
                     /translation="MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLD
                     VQLFERGKTLKLTHAGRLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKVGISEPSAS
                     LVFPKILKTFLADFPKLMVNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFF
                     HDSLDLIVSESHPLASRTSVELRDLRDECFIFTPANCPIRIQIEQHLKRAIGSDYKKM
                     ELTSSMSHKYFVRENVGVSIFTSTAHSELLDGTVRIPIENLPISPPIGLLTNQKEKDF
                     DSTTKELIDRIIYYFDDKKRQLG"
     gene            complement(11897..13849)
                     /locus_tag="U0280_001120"
     CDS             complement(11897..13849)
                     /locus_tag="U0280_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HEM2271074.1"
                     /translation="MEIFELILLMLSAVFLSNVLSRFLPGIAVPLIQVILGIILAIPL
                     GDHTMDLNPELFLLLFMAPILFNDGASTDKKSLWKNRKAILSLSIGLVFVTVGVLGAF
                     IHYLIPAIPFAAAFALAAALAPTDAVAVGALAEKVRVPHKIMHILEGESLINDASGLV
                     SFQFAVLALVTGTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTS
                     FMLMEILLPFLIFMVAEKVGVNGILAVVSGGMVHSFSYKGLNPEIAQLNLLSKNTWSV
                     IIFSLNGLVFILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFFR
                     NYEENPKVDLVSRLKNTFLYTVAGVRGTITLVSALSLPFVLGNGNAFPERDLLIFIAA
                     GVIITTLLLANFTLPLFADKKDKIAADHTTDIVLLRDIVQQLQAYKTDENTVEMNKVL
                     NMYNNRIFSLMEHKEVNATEKELRRLTQEWQLENTRRLVFERKIDTGVGLSHMMRLGK
                     RLYVQTRAEKYRARMRYRQLLSHRFRDFRFVPLTFEERRKEIAKLQNENNLFVIQKLQ
                     ELDSNEYNPEIISLYLMNFERALGRGKNKKESNDEALQTTIDLASQIERETIQHYFEK
                     GTITRKEMKVYRDNLLAIEANMQLEF"
     gene            complement(13973..15571)
                     /locus_tag="U0280_001121"
     CDS             complement(13973..15571)
                     /locus_tag="U0280_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2271075.1"
                     /translation="MKLWKNATFYQMTAEGDQVSAVLTENGHIYAVGEARELEKQHAA
                     NITETIDLEEKVVFPGFVDAHIHLLWYGQALERLNLNQTTTKKEALALIAERTKQLAS
                     DEWLFVEGYDENKWSDEQTLISLADLDEVSQTNPILVRRIDYHSVSINSALQAHIADF
                     SENGFDGGGEIVRDKAGNFTGILRDNATTMAIDSFPAATPSELSAWLKIAITDLWSKG
                     ITGAHSEDLHYFTGFTSTLAAFRNTIGANKMPFRAHLLVHHAELAAFSASNESFVSGD
                     AFLELGAMKIFYDGTVGSRTALMSAGYADNSDEKGLQIHSDQAFEDLVKAARKAGLPV
                     AIHILGDQAFANVIRTLRANPPREGQYDRLIHTPWLTEALIEEAAGLPVLFDIQPQFM
                     TSDLPWALEVLGENHPPLAFAWKTLLQAGFPLAGGSDAPIEVPNPFWGIHAAVTRTAN
                     ADLDGVEYWPEQALTVFEAIQLYTKGAAFAGYKTTTRGQIAPGFVADFTILAEDPFQM
                     KQADLRQVSAMMTVVDEQIVYQKK"
     gene            complement(15575..16816)
                     /locus_tag="U0280_001122"
     CDS             complement(15575..16816)
                     /locus_tag="U0280_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2271076.1"
                     /translation="MTKWLPKDLWIVIIGMVLLYTGLSFIWPFNMIYMTQELGMSTTD
                     ASLVLLINSGVGIVSSIIGGLIFDRFSGFISLTIGTIILVLSTASLCFFHGFPFFIWN
                     LWAVGIAMGMVFSGLYAAAGLTHPTGGRTGFNAIYVAQNIGVAIGPLLAGLLAKQGMS
                     HVYIGSFVFAIAFAGYFFFFFHKIDWKSERVSAETKHRKKGAKLEFPTKLALCSFILL
                     LLTYLLCQLPHVQWQSNLSTYMTEIKGVTSSEYGNLWSLNGALIVLGQLILIPVVNRF
                     KKYLLAQIYIGIFLFILSFVVAMNASVYSGFVLGMIFLTLGEMFAWPAIPTIAYQLAP
                     KGAAGLYQGLVNGMATAARMLAPFLGAIVVQNLGGIKALFIGAFILLGCALISITLQQ
                     ILQKKDQQDKAALKISVNQGE"
BASE COUNT         4822 a         3676 c         3100 g         5386 t
ORIGIN      
        1 attaatgcac cgaccaaaga taaacctttt aatcaagctt ttacagtgga atatttaggc
       61 aacattgtaa atggtacacc tattaagtat ttgaatgtag aaatggatgt cttgaaaaaa
      121 gctgctgctg atcagattaa agatggggaa acagtttggt ttggatgtga tgttggacaa
      181 ctttcagaac ggaataccgg tattatggat acggatattt tcttgcttaa tcagactttt
      241 ggctttaaaa ctgcgatgac taaagctgaa cgcctggatt ataaacacag tatgcttaca
      301 catgcgatgg tattaactgg agtgaacatt gctaatggag aagtaaatcg ctggaaagtg
      361 gaaaatagtt ggggagaaaa aattggtaat aatggttatt ttgttgctag cgatgcttgg
      421 atggatgagt ttacattcca agtagtggtg cataaaaaat atctatctaa ggaattaatt
      481 gaatccttta accaaaagcc aattgtgtta aaaccttggg atccaatggg ttcgctcgca
      541 ctttaaaatg cgaattcgga aatgattttt attccattca tttgaaaaag agctgctgct
      601 acgccggtac catcttttat ttttcctgag aaggtaccgt cgtaaatagc acagctacca
      661 caagatggac ttttttcctt catgattatt tgcgtaatac cgagttcttg cattttaatt
      721 agagtaagtc tcgctccgtt cttatattct tctgtcacat ctgttccttt gttatcaatg
      781 acttttgcat gtcctaacca gacatctttg ccatcaccac ctattatttc tgctggattt
      841 cttggtgtag gcagtccgcc ggtaacttct ggacaaaaag gaatcgcttc tcctctttct
      901 accatttgtt ttattttggt tatttcttta tctttcccgt catatctaca ggcaattccg
      961 gctaggcaag cacttactgc aatcatttta ttttcctcct ttatattcac atttatttta
     1021 acataaaaaa gctgccccca acttataggc gacagctctg agattattag atattttggt
     1081 atgctacggc gatttgcgta ccgattaaag cattgtgttt tacaagctcg atatttgctt
     1141 cgaggctctt accatctgtt agttctttta ctttaccaag taggaatggt gtaacgtctt
     1201 tcccgtgaat gtgattttct tcagcttctt taagcgctgt ttggattaca tcgttaatta
     1261 ctttttcgtc catagcgaat tcttctggga ttgggttagt aattactgcg ccacctttga
     1321 tttgaagatc ccatttcgct ttaagcgatt ctgcgataac ttctggagca tctgcacgca
     1381 atgttaattc tacatcgctt gaacgcgtgt aaaatgctgg taatacgtcg gtttggtaac
     1441 caataactgg aacccctttt gtttctaagt attccattgt taagtttagg tctaggattg
     1501 atttagctcc tgcacaaacg acagcaacat ttgttttcgc taattcttct aagtcagctg
     1561 aaacgtccat tgttgtttcg gcaccacggt gaacgccgcc aatcccacca gttacgaaga
     1621 tgccgatttc tgcgagttca gcacaaatca ttgttgctgc tacagttgtt gcgccaagtt
     1681 gttttgttgc aataaggtaa ccgatatcac gacgagaaac ttttgccaca ttgctacttt
     1741 tagcgaatag ttctagttct tcatcagaaa gaccaatttt aatttttccg tcgattaaag
     1801 cgattgtcgc tggtacggca ccgttatcgc gaataatttg ttctacgtca cgtgccattt
     1861 caacattttg cggataaggc atgccgtgag agataattgt agattctagc gcaacgattg
     1921 cttttccttc tgcttttgct tgttttactt cttcggataa tgataaataa tttttcattt
     1981 gaattcctcc atgtcttttt gtagttggga tgtcgataaa ttttggcgaa cggtatactc
     2041 agattcgagt gttcgcgcgg catttacgct ccctgctctt aaaatttctt tcaatgcttt
     2101 tccttctaac catgcgtaga taaccgcgga gcaaaatgca tctcccgctc ctgtcacgtc
     2161 tacaatattt tcaattacaa ttgctggttc aaaaatagta ccttcacctt tgtttgctgc
     2221 aactgcgcct ttactgccat ttgtaacgat gacatttttt acgcctagat ctaaccattt
     2281 ttgtgcagct aagcgccagt cttcgtcatt tttgatagtc attcctaggt gcgtttctga
     2341 ttcgtctcgg ttgcaaatta gccaagttac atgatcaagt ctttctggta aatgagacat
     2401 tttgggtgaa gacacaggaa cgagtactaa tggaattgaa ttaatttcag caaagctgcc
     2461 aagatattct agtgtttctt tcggacagtt taaatctgca atgattgcgc tcgcctgact
     2521 cagcaagcct tcattttttg cgagtacatc tggagttaag tgatcatatg catccatgtc
     2581 cgctagtgca acgagtaaat ctccattgtt ttcgagcact gctgtataag aaccagttgc
     2641 gatgcttggg aatgctgtga cgtaatctaa gttcatatat gtattactag catttttgac
     2701 agcttcccag tcagagtctg ttccacaagc agtgagtaat ataacttctt ttccgaggcg
     2761 tccaaggttt tcgcctacgt ttctagcaac cccgccagca ctttgtgttg agcgcactgg
     2821 gtttgatgtg gctagttggg ccttgtcttt aatataaaac ttccgatcga cgttagctcc
     2881 acctatacaa acgatttgtt tggcttcatt taaaatataa gcttttccta aaatgcgacc
     2941 tttcttaata aggccggaaa taaggtttgc gactgtcggt cttgataaat caagtatgtc
     3001 agcaagttct tgttgagaaa tgtaaggatt tttacggatg gaattgaaaa ttatctcttc
     3061 cttttcgttc attttcgctt tattattctc cacgatataa tgcacctcca ttccaaactt
     3121 ttgttttatt ttcaaacaca tgtttattat atatgtaaat gctttctttt gcaaactaaa
     3181 aaacgaaaat ccgcttcttt ttaggaagga aattttcgtt taggttcatt tattttgaag
     3241 aatagccagt tcactttcag ttaaagggcg gtattcgccg agtccaagtg actcgtctaa
     3301 ttgtaaattc cccatcgaaa ttcgttttaa atagctgact ttcttaccac gtgcggcgaa
     3361 cattcttttt acttgatgga atttcccttc ttggatagtg acgtttattt cgtttggtgt
     3421 aataatttct aaacgtgctg gtttgcaagt gtatccatcg tcgagttcaa ttccagctgc
     3481 aaaagcttct acatcagcta gagtaacatc accatcaatt ttagcgtagt atgttttatc
     3541 tatatgtttt ttaggtgaga gcaaattgtg tgcgagtgtg ccatcgttcg ttataattag
     3601 caagccttct gtatctttgt ctaagcggcc gactgggaat ggatcagtga gcgtgtcttc
     3661 ttgcgcaagc aaatcgatga cggtttctga cacattatcc tcggttgcgc tcacgacatt
     3721 ttgtggttta tgtagcataa aatagacgaa ttcttggtaa acgactggtg ttccatggac
     3781 agttacttgg tctttatcag ggtttacttg ggttttgcta tctttctgaa tcgtgccatt
     3841 gacgacaact gccccagatt taagcaaagg tttcacttct tttcgactcc cgaaacctgt
     3901 atgggacaat aatttatcta agcgcatggt ttcgctcctt tttttctttt attgtaacaa
     3961 aaaaacgaag cttcctcaaa ggtgctccgt tttctttcta ttatttagtt tcaacaactt
     4021 gtttattttg aggtattgtt aagccgaggt tgcctcttaa tgtcgtagct ggatattcgt
     4081 ttcggtataa acctcgactt tgcagaagag gaataacttg ttccacaaaa gtttcaaacg
     4141 ttccaggaat atcagaagca ataataaaac catctgcagc atcattttgg aaccaaacat
     4201 cgattaaatc ggctacttgt tcttttgttc ctataaaagg tgtttttggc gttgctgctt
     4261 ctgttgccac ttgacgaagg gttaggtgcc gttctttcgc ttcttttttg attcggtctg
     4321 ttgtgctttg aaaggcattt ttgccaatat caccaaggtc tgggaatgga gcatccaaat
     4381 caaattgact taaatcatag tcgtcgaagt aacgtgctag gtaagttacc gcattttcta
     4441 ttggaattag gctagcaaat tcagtatatt tggcttctgc ttcttccaac gtgtccgcta
     4501 caattgggct aattcctggg aaaattcgga cttcatctgc atttctacca gccttttcag
     4561 cgcgggcttt cacatcttga tagaattcaa tggcttcttc taaggaatca gaatgagtga
     4621 aaatggcttc cgcgttttta gcagcgaaat cgcgccccgt actagacgcg cctgcctgga
     4681 aaacaactgg ttctccttgc ttcgagcggc cgatatttaa cggcccttcg acttggaaat
     4741 actctccttg atgatttaaa cgatgtaatt tttcaggatt aaagaattca ccggtttctt
     4801 tattataagt gaacgcatcc tcttcccaag aactccagag tccgcgaacc acttttaaat
     4861 gttctgctgc aatggtgtag cgatcgctgt gggttgggag atttttcttg ctatgatttc
     4921 gcgcggcgcc ttcttgcgga gaagtgacta gattccaacc cgctcggccg ccgctaatgt
     4981 gatcaagcga agagagctgt cttgcgagtg taaatggttc tgtaaaagaa gtcgagaaag
     5041 ttccgacaag tccgatgttt tccgtagact cagctaatgc cgataaaatc gtaattggtt
     5101 caaaacgatt aagaaaatgc ggaatcgatt tttcggaaat aaaaaggccg tctgcaataa
     5161 atacaaaact aaataaccct tgttcggcaa ttttggcgcg tgtcttataa aaatctaaat
     5221 ccgtacttgc tgcggggttg atgtccggat gtcgccaacc atctgttgtt ccgccaacac
     5281 cgtgaataat tgcaccaaac tgaattgttt cttttctagt cattttactt cctccttttc
     5341 aaacaatgct ttttccaaat gttccaatcc gatttctgta actgcttggt aggtcccttt
     5401 ttcaatatcg ccgatttcta cgactgggac ataacgaatg ccgtatttcg cttgcagtac
     5461 ttctcgcaaa taatcatggt cggtgacgtc gatatcttgg aagacaattt tttgctcagt
     5521 taaataatct ttcacatctt tacaataatg acatcctact ttactccaaa caacgacgtt
     5581 agccatggac aacttcctcc tttatcgatt cacttaataa ttggtacgag tatcgcttga
     5641 tttccgtaga tttaactggt gttaaaacaa caaaatcttg gatattatat tcttttgaaa
     5701 ggcgtttaat ctctgctccg acttcttgtt tggttcctgt tattgcacca attctttggg
     5761 taataaaccg gtatgtttgg ttgatatctt ttacgtagga ttccgcttgt tcgcgcgatc
     5821 cgacattaac tctacgtccg tccgcaagct cgactttgat tgactctcgc tctggaatat
     5881 gtcggtctgc tgcgatttta gtctcagcta ctacaacaat tggtgctagt tggaaactag
     5941 cttttgtgtt tattcggtac tgttcaaata gctcgcgtgc ttcttttaaa acagcttctt
     6001 ctccatttat aaaataagca aacacaaagg aaatacctag tttggcagct tgtttcgcgc
     6061 tagctgcact tcctccaagc aaaaatatct ctggtttgtt ttctggaagt ggttttgctg
     6121 caatagccac ctctgaatga tgggttacaa aatcgactag ttctttcaat ttggcatcaa
     6181 aggttcgcgt aggttttacg aagtcttttt gaagggcatc ggttgctggt tgaaatccgc
     6241 ctggcgcttt tccgacgcca agtgacatcc gacccggcgc taagttctca agcacatgaa
     6301 attgttcagc gactttatat ggactataat gttgtagcat tattccgcca gatgcaagct
     6361 tgattgtgct cgtttttgca gcaatatacc ctaaaagaac ttccggagct gcgccagcta
     6421 tttcgtctga attatgatgc tcggcaaccc agaaacgatg atagccgagt tgttctgcga
     6481 gttgcgcaag ttctacggta ttttgcaaag cttcactagg tttttcgcct ggatttataa
     6541 tactttggtc caaaatactg aatcgaatcg tcatatgaca cgctcctttt tcacttcttt
     6601 gatttcatat aaataatccg ctgaaactcg gtgtaaaaag cgttttgtcc gttcttcttt
     6661 ggtatgatta aacacttcat cgggagtacc ttgttcgaca attagtccac catccataaa
     6721 aacgacttga tctgccactc gtttggcgaa ctccatttca tgcgtaacga cgatcatcgt
     6781 tgcacccgca cgtgcaatct ctagcattac ttccaatact tcaccgacaa gttcaggatc
     6841 aagtgcggcg gttggttcat caaacaaaat gacgtctgga ttaatagcga gtgctcgtgc
     6901 gattccaacg cgctgttttt gcccgccgga aagttgggaa ggataggcac taaatttgtc
     6961 cgccaaaccg acttttgtga gctctcgttc tgctatttca cgggcaattt ttttcggcat
     7021 ttttctagcg actgttagac cctccatcac attttgaatg accgttttgt gcgaaaagag
     7081 attatactgt tggaaaacca tcgccgtatt tttccgcagt tgcaaaactt cttttttgga
     7141 tggtttctta cagttaatta tttggtcatg catcgaaatt tcaccatttt caggtcgttc
     7201 cagtaagttt aggcatcgta aaaaggttgt tttccctgag ccacttgggc caagtattgt
     7261 tactacttca ccctttttca ccgttaaatc aattcctttt aaaaccttgt tttcaccaaa
     7321 gcttttttga atatttttaa ttgtaatcat actgttcctc ctcgatattt agcgatattt
     7381 ttttccaaga tataattaat cgcttcaatc aaaatagtta aaaaccaata aatgagtgcg
     7441 gcaccgataa atgcttcgag aaacgcgtaa ttgtcggaag ctactattgt tgccattcca
     7501 gtgatttctg ggactgcaac gatggcagcg atggatgtgg tatgtaaaaa tccgatgcac
     7561 aaattcgtga aattcggtag ggcaatcatg aaggcttgcg gtaagagcac ttttcgaatc
     7621 gcttggccat gcgtatatcc tacagagtaa gccgcttcca tttgtccgat atcaaccgca
     7681 ataataccgg agcgcaaaat ctcggttaag taagctcctg ccgtgaaaga cagcgcgata
     7741 atgacaaaaa taacgaccgg tattttgttt gcagaaatgc ctaatccgaa tgatttgctc
     7801 aaaaaatcca ccaatagggg aatgcctagg taaatcagca taatatgcag aatcgctggg
     7861 gtgcttcgaa aaaaagaaac gtaaaacttc gctatcggtt ctaaaaatcg gacatgatac
     7921 atccgaatca acgtcatacc tatagcgata atgaaaccga acaatatcgg aaagaaagtc
     7981 atcgcaagtg ttaacgggat agtttttaac attgccatta cggcggttcc aataaaaggc
     8041 acatcaagcg gcatcattat ctctccttta taactcgata tcgaaaatac tcgtgaatct
     8101 ggtgttttct tttttaactc gtttttcaat ccatttgaag gaatattcca gtaagacggc
     8161 cgtcaaatag taaataattg ataaagaaat atagacctct agcgcgtgat tacttagtgt
     8221 tatcagcgtc tgacctcttc ctgacatatc cattactcca atcgaaaaag cgagcgacgt
     8281 atctttcaaa taaccaatga ctaaattgcc aaaattcggt agagcttgat agagtgcttg
     8341 tggcaagatg attcgtaaaa acgtttggcg actactcaga ccaatactat aagccgcctc
     8401 tgcttgtccg gcatccacgc tgttcacgcc tgcgcgaatc acttcggcaa tggtcgctgc
     8461 actgcttaac gcataagtcg caatcgcagc ataaagggga tccatttgtg ataaatcaat
     8521 gccaacgatg cttgaaagtg ccgggattcc gtaaaaaaca ataaatagtt gaaccataat
     8581 cggcgtccca cggaaaaacg aaatatacac tctggccaat tgatctaaaa ctggtatctt
     8641 ataaattctt ggtaaagata gtagaacgcc taatataaat ccaaaaataa gcgagagtgc
     8701 caaaatatac aacgtaatcg gtaaataacc agctaacgtt ggaataaaat cagcaatcat
     8761 tttcacatcg aacgctttat ccattttaat ggcaccctcc ctcgtttaat attgttcttt
     8821 tgaataatct gcgccaagcc atttttcact taatttttta agtgttccat catcaataat
     8881 agattgaagc gcctcatcta catctttgct tagtttcgtt tcatcttttc cgagcatgaa
     8941 gtatactttc gcattagata gaacatcgcc aactactttt tctttgatag cgcttgtttt
     9001 attttggaaa tctaccgcga atggtgtaga aatcgttgca tcagcgcggc cagttttcag
     9061 ttggttcgct gtatcatttg acccttgacc ttcataagca atttcaaaat tattgccttg
     9121 ttcttcatta atttttttca atacgagcgc accattcgat gttgcgcttg tgataacgcg
     9181 ttttccagct aaatcttttg tgctgtttat gctgttatta ctgtctaata ccgtcaattg
     9241 taatgggaaa ttattgtatg ctacatcatt aaataaaaat ttcttctcgc gttctttact
     9301 tttttccatt tgatgcgcga caatgtctac ttttccagct ccaaggctaa cgagtaaatt
     9361 agaaaaatcc atcgttttaa atttaaattt atagccgggc aaacgtttat cgatttcttt
     9421 tactagttcg acatcataac cggttaattt cccattttca tccaaaaagc agacatttgg
     9481 aaattgtgtt ccagtgccaa ccgtgattgt ttgtactttt tgattcgctg cttctggttc
     9541 ttcttttcct ccacatgcgc ttaatgttaa tgcggctgta agagccagtg ccaaaatccc
     9601 atatttcttt ttcatccttt ttcccccttt tttatgtcca gctaggtatt ccgagtagtg
     9661 tggcatcgaa tttttccgga attaagattt tccgcatcat aacacccaca tcaccgtctt
     9721 cctcatgttc aaagtagacc tcataaccgc ggcgtagata catatccagc aaccacgggt
     9781 gttttctagc agaagttcca agtgtcagtg ccggtgcttt tagcgtgtcg cgaagtaccc
     9841 gttcttctac atacgttaat aatttatcgc caatcccctg tcctgcaagt tccggtgccg
     9901 ttgcaaacca ccaaacaaat ggatatttag aaggtggaga gctgctctcc cacggaaaac
     9961 gaacggtaat cgtagaaatt aatttgccgt ttcgttctaa aacaaaagca gaagaattaa
    10021 caatattttc tgtcaccatc gctaaatccg cattcgttga cggccaatca attcctaatt
    10081 ctttcaccga ttgaaaagca ctcgacaaca attccaaaaa ttccggcgca tcatccacag
    10141 tcgctactct aaaaatatct tctgtcattt cccgctctcc tccttaaact tccactgatt
    10201 gttgatttaa taatgaaatg aattggttta aagcaatatc tagccgttct ttcgctgaag
    10261 attcaatttc atacagccca tccccgaacc gttcaatttg tttgtctacc gtaaactgcc
    10321 cttttaatat cgtttctgct ccaagttcct tcaacacagg atcaagtgcg tattgcagtg
    10381 cgagcaaatg tccgtttgat ccaccaagtc caagtggcaa aacgactttc cctttcaaag
    10441 ctttgagtgg caaaagatcc aaataggctt tcaacactcc tgaataggct gctttgaaaa
    10501 tcggggtagc aataataacg cccgaacttg attcaatttc actatttgcc aattgaatat
    10561 ctgaatgcgc gaaatcagcg gtgactaatg cttctgcgtt tattttatgc acttcgatga
    10621 tgttcacttc taaaccattc gttactaatt catttgctgc tagttgagtt aatcctgtaa
    10681 gcctggattc tgttttgatt cccccagcaa taattgtcac tttccccatc aaatcgcccc
    10741 ttttcaatcc ctatcaactt acttggtttt tagatattag ctatactata aagtaaaaga
    10801 ttgggtttgg ctaatcaaaa aaactaatgg ctaaccacag taatactaat acttctgcct
    10861 gaatccgcat tattcctatg aattttatca gattaataaa ttgcttctcc tatttttaca
    10921 gtgtatactg ttagaaatat caaaaaactc caatatgaag ggggaattat attggaattt
    10981 cgaaccatta aaacttttta tacggtggtt aatacgggaa gttttcaacg cgcagcagaa
    11041 gtattaaatt attcgcaacc gactatttcg atgcgaatta aacaattgga acaagactta
    11101 gatgttcagt tattcgaacg tggcaaaact ttaaaactaa cgcacgcagg tagattattt
    11161 tacgaaaggg cgggccagct catcgctcaa tatgaagtac tcgatcacac gatattcgac
    11221 ttaaaaaatg gcaacgccgg ccttatcaaa gttggaattt ccgagcctag cgctagtctc
    11281 gtttttccga aaattttaaa aacgtttcta gcggattttc caaagttaat ggtgaatgta
    11341 tcggtggatg atgcgaatac ttgtagccaa aaactcattg atggggaaat tgattttgcg
    11401 atttgcggag aaccagagct gattttggag aacttctatt ttccattttt ccatgattcg
    11461 ttagatttaa tcgtctcaga aagccatccg ttagcttcac gtacttctgt ggagttacgt
    11521 gatttacgcg atgaatgctt tatcttcaca ccggcaaatt gccccatccg catccaaatc
    11581 gaacagcatt taaaacgtgc tattggtagt gattataaga aaatggagct cacaagtagt
    11641 atgtcacata agtattttgt tcgtgaaaat gttggtgtat ctatctttac tagcaccgcg
    11701 cactcagaac tacttgatgg cacggtccgc attccgattg aaaatttacc catctcaccg
    11761 ccaattggac ttttaactaa ccaaaaagaa aaagattttg acagcacgac gaaagaactt
    11821 atcgaccgga ttatttatta ttttgatgat aaaaaaagac agctaggcta aaaaattagc
    11881 ttaactgtct tttttattaa aattctaatt gcatattcgc ctctatcgca agtaaattat
    11941 cacgatacac tttcatttct ttccgcgtaa tcgtaccttt ttcaaagtag tgttgaattg
    12001 tttcgcgctc aatttgtgaa gctaagtcaa ttgttgtttg tagcgcttca tcattgcttt
    12061 cttttttatt tttcccacga cccaatgctc gctcaaaatt cattaaataa agcgaaatga
    12121 tttctgggtt atactcattt gaatccagtt cttgtagttt ttgaatgacg aatagattgt
    12181 tttcattttg cagtttagca atttcttttc tacgttcttc aaaagtaaga ggcacaaatc
    12241 ggaagtctcg aaaacgatga cttaataact ggcgataccg cattctcgct cggtacttct
    12301 ctgctcgtgt ttggacgtag agtcgttttc caagccgcat catatgcgaa agtcccacac
    12361 cagtatcaat ttttcgttca aatactaatc ttctcgtatt ttcaagttgc cattcttgcg
    12421 ttaatcgccg caattctttt tcagtagcat ttacttcctt atgctccatc aaagagaaaa
    12481 tccgattatt atacatattc aacactttat tcatttccac tgtattttca tctgttttat
    12541 acgcctgtaa ttgctgcaca atatcgcgaa gtagtacaat atctgtcgta tgatccgccg
    12601 caattttgtc tttcttatct gcaaaaagtg gcaaggtgaa attggccaaa agtagcgtcg
    12661 taataataac tccagcagca ataaaaataa gtaaatcacg ctcaggaaac gcattcccat
    12721 taccaagaac aaaaggtaac gaaagcgcac tgactaatgt aattgtcccg cgaacaccag
    12781 ccacagtata aagaaaagta tttttcaatc tgctaaccaa gtccactttc ggattttcct
    12841 cgtaattgcg gaaaaacaag atccataaaa accttagccc gagcagtaag aaagtgattc
    12901 ctagtatata cacgaatagc ataccttttt gaatattagc atcttgccaa atcgtcatca
    12961 aaatttgcgg taattgtgtc cctagtaaga taaataccaa accattcaaa ctaaaaataa
    13021 taacagacca cgtgtttttt gaaagcaagt tcaattgcgc aatttcagga tttagtccct
    13081 tgtaactaaa tgaatgcacc attccgccac taactactgc taaaatccca tttactccaa
    13141 ctttttcggc taccataaaa attaaaaatg gtaacaaaat ttccatcagc ataaaagaag
    13201 tcatattttc gattcctagc tgacgtaaac cacgcattaa catgattttc agtaaactaa
    13261 gggcagctcc aagcgcaatc ccacctaatg aaagaagcaa aaagcttgtt ccagctgaca
    13321 taaatgagaa tgttccggtt acaagcgcca acacagcaaa ctggaacgaa acaagtccgg
    13381 aagcatcgtt aataagcgat tcaccttcca aaatatgcat aattttatgg ggtactctta
    13441 ctttttcagc cagcgccccc accgcaacag catccgtagg cgcaagtgcc gcagctaacg
    13501 caaacgccgc ggcaaaaggt atcgcaggaa ttaagtagtg aataaacgca cccagtaccc
    13561 caaccgttac aaacactagc ccaatcgata atgacaaaat agccttccga tttttccata
    13621 aagatttctt atccgtactc gccccatcgt taaaaagaat cggcgccata aataataata
    13681 aaaataattc cggatttaaa tccatcgtat gatccccaag cggaatcgcc aaaataatcc
    13741 ctagtattac ttgaattaaa ggcactgcaa tccccggcaa aaatcggctt aatacattag
    13801 acaaaaacac cgcgctcaac attaataaaa tcagttcaaa tatttccatt aatacatccc
    13861 tcgttcccgt atccgtgcca ctgagtcaga agcgtggcat ttcttccgtt cccatattag
    13921 caaaaaaact tttcagaaac atccgtctct gtatggagtt tcctagctat ttttacttct
    13981 tctgatagac aatttgttcg tctacaactg tcatcatagc gctcacttga cgaaggtctg
    14041 cttgtttcat ttgaaatgga tcttctgcca aaatcgtaaa atcagcaaca aaacctggtg
    14101 caatttgtcc gcgtgtagtt gttttgtagc ccgcaaatgc cgcgcctttt gtatatagtt
    14161 gaatcgcttc aaatacagtg agtgcctgct ctggccaata ttctactcca tccaaatctg
    14221 cattcgccgt tctagtaaca gccgcatgga taccccaaaa cggattcggc acttcaatcg
    14281 gcgcatcgct tcctccagct agtgggaaac cagcctgtag aagcgttttc caagcaaaag
    14341 ctagcggtgg atgattttct ccaagtactt ctagcgccca cggaagatca ctcgtcatga
    14401 attgcggctg tatatcaaat agcacaggta acccggccgc ttcttctatt agcgcttctg
    14461 taagccaagg tgtgtggatt agtctgtcgt attgcccttc tctaggcgga ttggcacgta
    14521 acgttcgaat aacattagca aaggcttgat cccctaaaat atgaatagca acaggtaatc
    14581 ctgcttttcg cgccgcttta accaaatctt caaacgcttg atcagaatga atttgcagtc
    14641 ctttttcatc agagttatcc gcatatcccg cactcatcaa cgccgttcgc gagccaactg
    14701 ttccatcata gaaaattttc atcgccccta attctaaaaa ggcatcccca cttacgaaac
    14761 tttcattaga agccgaaaaa gcagctagtt ctgcgtggtg aaccagcaaa tgcgcacgaa
    14821 acggcatttt attagcacca atagtatttc gaaaagcagc taaagtcgaa gtgaatcccg
    14881 tgaaataatg taaatcttcc gagtgtgcac ccgttatgcc tttcgaccac agatcagtta
    14941 tcgcgatttt aagccatgcg cttagttcag aaggcgttgc tgcagggaaa gaatctatcg
    15001 ccatagtcgt tgcattatct cttaaaatcc ccgtaaaatt acccgcttta tcacgaacaa
    15061 tttcgccgcc accatcaaaa ccattttccg aaaaatcggc aatatgcgct tgtaatgcag
    15121 aattaataga aacactatga taatcaatgc gccgaactaa aatcggattt gtctggctta
    15181 cttcatctaa atcggccaaa gaaatcaacg tttgctcatc tgaccattta ttttcatcat
    15241 aaccttccac aaacaaccat tcatcactag caagttgctt tgttctttca gcaatcaggg
    15301 ctagtgcctc ttttttagta gtggtttggt ttaaattaag acgttctaaa gcttgtccat
    15361 accaaagtaa gtgaatatgc gcatcaacga acccaggaaa taccactttc tcttctaaat
    15421 caatcgtttc ggtaatatta gccgcatgtt gtttttctag ttctcgtgct tctccaaccg
    15481 cataaatatg accgttttct gttaataccg cagaaacttg atccccttca gctgtcattt
    15541 ggtaaaaggt agcatttttc cataatttca ttttttattc cccctgattg acggaaattt
    15601 tcaaagctgc tttatcttgt tggtcctttt tctgtaaaat ttgttgtagt gtaatactaa
    15661 ttaatgcgca tccgagtaaa ataaatgcgc caataaatag agctttaatg cctccgagat
    15721 tttgaacgac aattgctcct aaaaatggtg ctagcatgcg cgctgctgtt gccatcccgt
    15781 tcacaagacc ttgatacaag ccagccgctc cttttggtgc aagttgataa gcaatcgttg
    15841 gaatcgctgg ccaagcaaac atttccccga gcgttaagaa aatcattccg agtacaaagc
    15901 cactataaac acttgcattc attgcgacta caaaagataa gataaataag aaaataccga
    15961 tataaatttg tgcgagtaaa tattttttaa atctgtttac aacggggatt aaaatgagct
    16021 gaccaagtac aatcagcgcg ccatttaaac tccataaatt tccgtattcg ctcgatgtca
    16081 cacctttgat ttctgtcatg tacgtagata aattcgactg ccactgcaca tgcggcaatt
    16141 ggcaaagcaa gtatgtcaat aataatagaa taaaagaaca caaagctagt ttagtcggaa
    16201 attcgagttt agcgcctttt ttgcgatgtt ttgtttctgc gcttactcgc tccgatttcc
    16261 aatcaatctt gtggaaaaag aaaaagaaat atccagcgaa agcaatcgca aatacaaaag
    16321 aaccaatgta tacatgactc attccttgtt tcgctagaag ccctgcaagc aacggaccaa
    16381 tagccacgcc aatattttgc gccacataaa tcgcattaaa tccagttctt cctccagtcg
    16441 gatgtgttaa ccctgctgct gcgtataatc cagagaagac catccccatc gcgataccaa
    16501 ccgcccacaa attccaaata aagaatggaa atccgtgaaa aaagcacaac gaagcagttg
    16561 aaagcactaa tataatcgtt ccaatcgtaa gtgaaataaa accagaaaac cggtcaaaaa
    16621 taagtccgcc gataatacta gaaacaatcc ccactccaga atttatcaac aacactaatg
    16681 aagcgtccgt tgtcgacatc cctaactctt gcgtcatgta aatcatattg aaaggccaaa
    16741 taaacgatag ccctgtatat agtaacacca tcccaataat tacaatccat aaatcctttg
    16801 gtaaccattt tgtcatttcc tacactttcc cttcattaaa actcaccttt tttagggtat
    16861 cacaaccatc cacattcgaa aagaaaaact tcatcaaaaa accacctagc aaattttgct
    16921 ggtggctaat aagggactgg cgataaatcc ctatcatggt tacttataag tgtactatga
    16981 attc
//
LOCUS       DASDXX010000044        16963 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.044, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000044 DASDXX010000000
VERSION     DASDXX010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16963
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.044"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            51..527
                     /locus_tag="U0280_001123"
     CDS             51..527
                     /locus_tag="U0280_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271077.1"
                     /translation="MIQATINGTEALEKASGYHVSPDWPGIDFFFYLPYVLENVKKDD
                     RMIKWTRLVVLKEENKIIGEIGGQGNPDETGEIEIGYSIVPDYQNKGYMSEALIGMIA
                     WLEEQPAIHRIFARSYEQNMASIQVLKHNHFVHIKEKDTEEKQGRVMMWEYPIKRT"
     gene            500..985
                     /locus_tag="U0280_001124"
     CDS             500..985
                     /locus_tag="U0280_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271078.1"
                     /translation="MGISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSR
                     AYAEQFANEYLILSPKYGFLRPDDIISKTYDVRFTMKGTSADTIQLEELKEQWQKLQI
                     NPTEPIPMLGGKKFRGLLTSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRT
                     E"
     gene            complement(968..1105)
                     /locus_tag="U0280_001125"
     CDS             complement(968..1105)
                     /locus_tag="U0280_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271079.1"
                     /translation="MLHIITLSLAILMALQTIYFFIRKNVNMGVMFLLITAALLLLST
                     I"
     gene            complement(1137..1568)
                     /locus_tag="U0280_001126"
     CDS             complement(1137..1568)
                     /locus_tag="U0280_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HEM2271080.1"
                     /translation="MAENIDDYLEKGMYGAKEINPAEKKKYLGTYRERVLVALTKEEV
                     LTQEYLPELEKAILENSDSKLLLNGLLHYNSLRPYIKLAEKCKHEFSIVTRLEGETDI
                     YLVLACQKAVNKEDIHLYKEAEVEQEEEPVSLLEKVRKLFN"
     gene            complement(1687..3162)
                     /locus_tag="U0280_001127"
     CDS             complement(1687..3162)
                     /locus_tag="U0280_001127"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEM2271081.1"
                     /translation="MTDELEQKALITIFGGTGDLANRKLYPSLYHLYSKGSLGDNFAV
                     IGTARREWSNDFFRDKVKESIKDIDGSEKDADAFASHFYYQSHDVTNKESYVTLKDLS
                     DELDAKYELGGNRLFYLAMAPNFFGTIASRIKSEGFVDTDGFHRLIIEKPFGHDLASA
                     EELNNSLRQAFKEDEIYRIDHYLGKEMIQNISVIRFANSIIESLWNNRYIDNIQVTLT
                     EVLGVEDRGRYYDESGALRDMVQNHILQIVSLLAMEPPINLTTREIRHEKVRALRSLR
                     VFEGKEVHQNFIRGQYGPGEVGGKELKGYRQEDNVDPHSNTETFVAAKLEIDNFRWAG
                     VPFYIRTGKRLAKKTTQIAIQFKDVPLNLFGQQQSLGGNVLVIHIQPDEGITLHLNVK
                     EPGQGMVTMPVNLNYIHSSPDGMNTPEAYEKLILDCLRGDATYFSHWDEVSLSWNFID
                     HIADVWTNTKDHFPNYKSGSMGPKEADDLIQRDGFQWFPID"
     gene            3463..4383
                     /gene="rnz"
                     /locus_tag="U0280_001128"
     CDS             3463..4383
                     /gene="rnz"
                     /locus_tag="U0280_001128"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEM2271082.1"
                     /translation="MELVFLGTGAGVPSRGRNVTSIALSMLNERNTIWLFDCGEATQH
                     QIMRSQIKLSKLEKIFITHMHGDHIFGLPGLLSSRSFQGGDSNLTIYGPAGIAEYVET
                     SLRLSGTRLTYKINFEEIEPGLIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNA
                     EKLKADGVEAGPVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANE
                     LELALNADILVHEATFEGDKAKMAGEYMHSTTLQAANLAKTANVKKLILTHISSRYDR
                     DASKELLIEAKTIFENTEIAYDLAVFPIGE"
     gene            4388..5179
                     /locus_tag="U0280_001129"
     CDS             4388..5179
                     /locus_tag="U0280_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2271083.1"
                     /translation="MNPFLKNKTVLITGASNGLGAEIARQVAMSGGNVIITARSTKKL
                     IELQKDIHDNFSVEATYFTLDMTDFEQVKQVSAEINASYQIDVLVNCAGFGLFENAVD
                     IPFETIEKMFDTNVLGLIQLTQLILPQMQARKAGHIINIASQAAKIATPKSTVYSATK
                     YAVLGFSNALRLELMPDKIHVTTINPGPIATNFFDVADKSGNYLETVGKLVLKPEKVA
                     RKTVQIMGTKRREINLPFVMNIATRLYQVMPQVIEFFGKGAFLKK"
     gene            5288..6358
                     /gene="dinB"
                     /locus_tag="U0280_001130"
     CDS             5288..6358
                     /gene="dinB"
                     /locus_tag="U0280_001130"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEM2271084.1"
                     /translation="MDTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVV
                     ATCSYEARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEP
                     LSLDEAYLDVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKK
                     PAGITVVTPEEAEAFLEQIPVTKFYGVGKVTAEKLHRLGIETGADLKKWSEWDLIREL
                     HKHGYHLYRHVRGRSNNIVNPHRDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEER
                     LIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR
                     LIGLTVTNLKPVYFENLRLEGL"
     gene            complement(6395..7594)
                     /locus_tag="U0280_001131"
     CDS             complement(6395..7594)
                     /locus_tag="U0280_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HEM2271085.1"
                     /translation="MTENKPSEETNELKDLVVEKEFNQTLDDLLANPFGSDGESAASI
                     VNNETDAAPRLVDMLTETNKKQALELSKQIEPGNQAAILGYGAPAQAKLHDFSHSMLA
                     HVQKQDVGPIGDIISDLMYRLQEADPDELAARNKNVFTKMFHRVKQSINEITSKYQKI
                     GTQIDRIALKLEHSKKRLMEDNSFLEQLYDKNKDYFQALNIYIAAGELKLEEINTKML
                     PELRKKAEQTGDQMDYQEVNDLTQFADRLDKRVYDLRLSRQITIQQAPQIRLIQNTNQ
                     ALAEKIQSSIMTAIPLWKNQVAIALTLLRQQQAVAAQRQVSETTNELLKRNADMLKTN
                     AIETARENERGIVDIETLKETQSSLIETLQETLKIQQEGRAKRAVAEKELVTMEQELK
                     ERLLEMK"
     gene            complement(7572..8231)
                     /locus_tag="U0280_001132"
     CDS             complement(7572..8231)
                     /locus_tag="U0280_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-bromo-4-chloroindolyl phosphate hydrolysis
                     family protein"
                     /protein_id="HEM2271086.1"
                     /translation="MTVFKKILAFTGSIFLVMLLAGILTSLIHSGLVIAAIVIAVAAI
                     LFFFSSKAGDRAQMIATGLTKKEYKYIRTNLEEARVKIIRLQKIMTQNKALYSFQERN
                     KTLLLTKRIYGIVKDEPKRFYEAEDFFFSHLDSLVELTEKYAFLEKQPVKDKKIYQTL
                     SDTRTLLNDLSRVIEKDLFTLLNQDVNNLDFELEVAKNSISKQKKKFERGTKDDREQA
                     K"
     gene            8505..9062
                     /locus_tag="U0280_001133"
     CDS             8505..9062
                     /locus_tag="U0280_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2271087.1"
                     /translation="MDSLEEKTLHTEKIFSGNIIELQVDDVELPNGEKGKREIVKHPG
                     GVAIIPFSADGRMYLVEQFRKPLEKNIIEIPAGKMEPGEDPLVTAKRELEEETGFQSD
                     DLTYLTSFYTSPGFASELLYIYVARDLRKMEHPLAQDADEFINLVKVTLEEAEQLIAQ
                     QCIHDAKTMYAIQYWKMQLLIEENE"
     gene            9536..10423
                     /locus_tag="U0280_001134"
     CDS             9536..10423
                     /locus_tag="U0280_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271088.1"
                     /translation="MEAIKVESLTKNYHKKRAIENVNLSVNEGELYGFIGPNGAGKST
                     TIKVLLNFIYATSGSATVLGKDVVKDSAEIKKMVGYVPSEVRYYPQMTANDIIHYAAK
                     FHHIENATQKMNKYYEMFSIDPKKRFGEMSLGNKKKVAIVAGLITEPELFILDEPTNG
                     LDPLMQHYLFKEMTERNKEGMTIFLSSHNLREVQEYCTRAAFIRNGNIIAVEDIANQQ
                     MTGKVIALKGTNLPLEKLTNAGARIIEKEAGKARLIFDDDIKTILPLLQEKEITDLTI
                     TNQELEDKFMTLYEGGEIK"
     gene            10420..11235
                     /locus_tag="U0280_001135"
     CDS             10420..11235
                     /locus_tag="U0280_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271089.1"
                     /translation="MNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDL
                     VNTKMNALPQDMMKILHMDSMADLTNIDAYFAYVFQYIFIAACVYAALIGAQALIKEE
                     TDGTIEFLYAQPITRSSLVFWKMIGNLLSFVAFWVITFVASVALVLFLKPSGVDGGNL
                     VMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMAGLNDK
                     VDFFQYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV"
     gene            11235..11855
                     /locus_tag="U0280_001136"
     CDS             11235..11855
                     /locus_tag="U0280_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2271090.1"
                     /translation="MDEKRLKILEVAMGEFTEKGYQAASTNKICAKAGVSKGLIFHYF
                     GSKEKLYIAAVSYAVDFATKEVRLEGEHWGDFVEMAIWSTKMKLDFNRKYPAVFGLIM
                     QAYGNPPVALKDKLEGFFDKAIERSEAQMNQVLSEMKLKKDVNMDAARKVMAALFKHI
                     TEISTVYLQSHPNATMEDFVPLAKDFTEMMRIVEFGICEEKKDLGE"
     gene            complement(11871..12869)
                     /locus_tag="U0280_001137"
     CDS             complement(11871..12869)
                     /locus_tag="U0280_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2271091.1"
                     /translation="MPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAEPAVGGKV
                     RYFFPEKIIRDIGGIPAITGENLVANLKQQAETFHPTIVCSERVVDVTKLSDGTFQLT
                     SHNGSIHFSKTIVIATGSGTFEVNKLEALHAEDFPFAIHYDVKNIEQFRDKVVVVSGG
                     GNSAIDWAQTLEPIAKQVHLIYRGEDFKAHEESVRELQNSRVEIHIHHEINELIGTNN
                     QLTKINVCCNKTQATKTIQTDALFINHGVKVDLGTMAEWGFEQADFGIVVDDEMKTTV
                     PGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG"
     gene            complement(12859..13683)
                     /locus_tag="U0280_001138"
     CDS             complement(12859..13683)
                     /locus_tag="U0280_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271092.1"
                     /translation="MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKST
                     ILKTMSRLMKPSKGAVYLDGKTIHSQPTRDVAKQLAILPQNPSAPDGLTVFELISYGR
                     SPHQSSFKSITAKDREIIFWSLRVTNLMELADRPIDSLSGGQRQRAWIAMALAQETDV
                     LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMIAIKEGKV
                     IAEGTPTNVMTEQTLEDVFNIKADILIDPRSGVPLCLPYETCNGCEIVKELDSSAK"
     gene            13848..14789
                     /locus_tag="U0280_001139"
     CDS             13848..14789
                     /locus_tag="U0280_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-hydroxamate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2271093.1"
                     /translation="MKKGIILLVSMLLIAVVLTACGDNKSAGKEKVEMRTYTMANGKK
                     VEIPAHPKRIVASEYLGNIVLLGMKPVGARAKQMENPFLKGRVDGIADIGDPVSAEKV
                     AELKPDLIIVSNDDEFEAMSKIAPTVLIPYATSKNVEEDVRQIADLVGEKKAGEAWLD
                     KFHQKAKESRAKLAGKLDPNETVGIYEVQDKDFYVMGQNMGRGGQAIYNALQLKAPAK
                     IQKDVLDGQDWQKISLEVLPEFAADRMFVTSTSSGSAKDGEKTLKDLTNSPIWKNLPT
                     FKAGNVYQMDFDTMFYYDPLAVEGQLDIIVEKLLASN"
     gene            14891..15916
                     /locus_tag="U0280_001140"
     CDS             14891..15916
                     /locus_tag="U0280_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2271094.1"
                     /translation="MDKSKQIKMNTRPTVAKFILSGGILLLLILALFGIAVGAADINL
                     STVWDALFHYNSSDTQHQIIRSLRVPRVVADMAIGAAFAVAGAIMQGITRNPLADSGL
                     LGLNAGSTFMVAVCFAFMPWLSYNSLILFSFVGAAIGAFLVFGVSSLAGSAMSPTRLV
                     LAGAAVSSLLTALSEGLAIYFQLSQDLAFWYAGGVAGVKWSQLAAIWPWLLGALIAAI
                     LLSRSITILSLGDDIAVGLGEKTTFVKIASMVVVLILAGLAVSVVGPVGFIGLIVPHL
                     VRFLVGVDYRWIIPCSAVVGAFLTLAADIVARTINPPYETPISVIFALIGVPFFLYVA
                     RKERRNL"
     gene            15916..16938
                     /locus_tag="U0280_001141"
     CDS             15916..16938
                     /locus_tag="U0280_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2271095.1"
                     /translation="MYMTTAEKRKKSRRVWTLIILSVLIFCTFTYSVNAGYSKLPFLE
                     VIKSFFGMADAGTQLIVTEFRLPRIVIALLVGAGLAVSGTILQGISGNGLADPGILGI
                     NNGAGLAVMLYISFFPSTMDVPVLFMPFIGFVGAILTAFVVYGLSYSRSEGLLPNRLL
                     LTGIAVAAAIAALITLLTVRLDPQNYQRYAEWMAGNIWASSWQYVYALLPWLIVLGAI
                     AFMKVKTLDVLSFGDQVATGLGVRVEREKFVLLIVAVGLAAACVSVSGGIAFIGLIGP
                     HIARKLVGSAHRWVMVTAALSGGLLLLLADTIGRLIIQPSEIFAGIVVAIIGAPYFLF
                     LLAKAK"
BASE COUNT         5106 a         2849 c         3694 g         5314 t
ORIGIN      
        1 tggataattt agagacagat cgattaatat taattaatta cacactagaa atgattcagg
       61 caacgattaa tgggacagaa gctttggaaa aagcaagtgg ctaccatgtg tcacctgact
      121 ggccaggaat tgatttcttt ttttatttac catatgtatt agaaaacgtg aaaaaagacg
      181 atagaatgat taaatggaca cgcctagtcg ttttaaaaga agaaaataaa attatcggcg
      241 aaattggtgg acaaggaaat ccggacgaaa cgggcgaaat cgaaattggc tacagcatcg
      301 taccagatta tcaaaataaa ggttatatgt cagaagcgct tataggtatg attgcttggc
      361 tagaagaaca gcccgccatt catcgcatat ttgccagaag ctacgagcag aacatggcat
      421 ccatacaagt actaaaacac aaccatttcg tacatatcaa agaaaaagat acagaagaga
      481 aacaaggaag agtgatgatg tgggaatatc caataaaacg aacctgatta ttattgcatc
      541 tggaaaacca aaaatatggg ataagtcgcc agatattggt ccagtaaaag caagcgaagt
      601 gtatactgga acatttcatc gtttaagtag agcctatgcg gaacagtttg caaatgaata
      661 tttaatatta tcccccaaat atggtttttt gcgaccggac gatattattt caaaaacata
      721 tgatgtccgc ttcaccatga aagggactag tgctgatacg attcaactcg aggaattaaa
      781 ggagcagtgg cagaaactac aaataaaccc taccgaacca attccgatgt taggcggcaa
      841 aaagttcaga gggttattga cgagcatcac ggatggtaag caagtattta atttcccact
      901 tgacggggca tcaggaattg gtgtcatgca gcgaaattta aagcaagcta tcgaaacagg
      961 aattccatta aatcgtactg agtaaaagaa gtgcagcagt tatgagcaaa aacataacgc
     1021 ccatattaac atttttacgg atgaagaaat aaatcgtttg taacgccatc aaaatagcga
     1081 gtgacagagt gataatgtgt agcataaatc gacctcctaa atagtaagcg gtaaacttaa
     1141 ttaaacagtt tacgaacctt ctcaagtaac gagacaggtt cttcttcttg ttctacttct
     1201 gcttctttat ataaatgaat gtcttccttg tttaccgctt tttgacaggc gaggacgagg
     1261 taaatatctg tttcaccttc taaacgagta acaatcgaaa attcatgttt acatttttct
     1321 gctagtttaa tataagggcg taaagaatta taatggagta atccgtttaa aagaagcttg
     1381 gagtcactgt tttctagtat tgctttttct agttctggaa gatactcttg ggtcaaaact
     1441 tcctcttttg tgagtgcaac taaaacacgt tcgcgataag ttcctaaata ttttttcttc
     1501 tcagcgggat taatctcttt tgccccatac atgccttttt ctaagtagtc atcaatattt
     1561 tcagccatta tatgagctcc tttaactagt tagttttcct ctctattcta acatgcatag
     1621 gggtttttgc aagtaaacaa agaaaaccag aaataggcta gggtagccat atttctggtt
     1681 ttttgattaa tcgattggga accactggaa tccgtcgcgt tgaatgaggt catctgcttc
     1741 tttaggcccc atcgaaccgg atttgtagtt cgggaaatga tctttcgtat ttgtccaaac
     1801 atctgctata tggtcaataa agttccatga tagtgatact tcatcccagt gagagaagta
     1861 agtcgcatca ccgcgaagac agtctagaat caatttttcg taagcctcag gtgtgttcat
     1921 gccgtctgga gaggaatgaa tataatttaa gttgactggc attgtaacca taccttgacc
     1981 aggttctttg acgttcaaat gaagtgtaat accttcgtcc ggttggatat gaataacaag
     2041 cacattacca ccaagcgatt gttgttgacc aaataaattc agcggtacat ctttgaactg
     2101 aatcgcaatt tgggtcgttt tcttcgcaag acgtttaccc gtgcgaatat aaaatggaac
     2161 gccagcccag cggaagttat cgatttctag tttggctgca acaaatgttt ccgtattgga
     2221 atgaggatcc acattatctt cttgacgata gcctttgagt tctttgccac ctacttcacc
     2281 aggaccgtac tgaccacgaa taaagttttg gtgaacttct ttaccttcaa aaacgcgtaa
     2341 ggaacgaagc gcgcgaactt tttcatgacg aatctcgcgt gtcgttaagt taattggtgg
     2401 ctccatcgca agtagagaaa cgatttggag aatatggttt tgaaccatgt ctcgaagcgc
     2461 gccactttca tcgtaatagc gcccacgatc ttcaacccca agcacctcag ttaaagtaac
     2521 ttggatgtta tcgatgtaac gattattcca aagcgattca atgatagaat ttgcaaaacg
     2581 aataaccgag atattttgga tcatttcttt tcctaaataa tggtcaatac gataaatttc
     2641 atcttcttta aatgcttgac gaagcgaatt atttaattct tctgcactag ctaaatcgtg
     2701 accaaatggt ttttcgataa ttaaacgatg aaagccatct gtatctacaa atccttcaga
     2761 tttaatgcga cttgcgatag ttccaaagaa attcggcgcc attgcaagat agaagaggcg
     2821 attgccacct aattcgtatt ttgcatctaa ttcatcagac aaatctttta aagttacata
     2881 agattcttta tttgtcacat catgagattg atagtagaag tgagaagcaa atgcatccgc
     2941 gtctttttcg gaaccgtcaa tgtctttgat agactctttt actttatcac ggaagaaatc
     3001 gttactccat tcacgacgag ccgttccaat aacagcaaaa ttgtcgccaa gagatccctt
     3061 actgtacaaa tgatatagcg aagggtaaag tttgcgattt gccaaatctc ccgtaccgcc
     3121 aaaaatagta atcagtgctt tttgttctaa ctcatctgtc atacgtcatt taccctcttt
     3181 cttattctct taatggcaaa aattaactgc taagaaaaag atttcttagt ttgaaaagaa
     3241 ccccacaaaa aaaggcctta ttaaatgagc tattaatttt cctcattagt ccatactatt
     3301 ttatccataa agaagcattt gtgcaactgt ttggtttgaa tattttttta atttgacagt
     3361 tatttctgaa ttataagggt tttttcttag aaatgtttat ttcctgttcg tttaagaata
     3421 tgataaaata agacacgaac tgggaaggga atgaaacaga ttatggaact tgtttttcta
     3481 ggaactggag caggcgtacc gtcgcgaggc cgtaatgtca catccatcgc actttcaatg
     3541 ttaaatgaac gaaatacaat ttggctattt gattgcggag aggcaacaca acaccaaatc
     3601 atgcgaagcc aaattaaact tagtaaacta gaaaaaatct ttattactca catgcacgga
     3661 gatcacattt ttggactgcc aggcttatta agtagtcgtt cttttcaagg aggggactct
     3721 aatttgacta tttacggtcc tgccggaata gcagaatatg tcgaaacttc cttaagactc
     3781 agtggaacaa ggcttacata taaaattaat tttgaagaaa tagagccagg tttgattttt
     3841 gaagatgaaa tgtttttagt tacagctgac gatcttgatc atggcgtacg tagctttggt
     3901 taccgtattg tcgaaaaaga taaacaaggt gcactcaatg ctgaaaaatt aaaagcggac
     3961 ggcgtcgaag cgggaccggt ttttcaaaag ctgaaaaacg gcgaaatcgt aacattagct
     4021 gatggacgcg tcattgatgg taaaaattat atcggagagc cgcaaaaagg gaagattatt
     4081 agtatttttg gtgatacaaa agaaactgct aacgaactag aactagcact gaatgccgat
     4141 attttggttc atgaagcaac gtttgaaggc gataaagcaa aaatggcagg agaatacatg
     4201 cattctacaa cgcttcaagc agccaatctt gctaaaaccg ccaatgtcaa aaaattaatt
     4261 ttaacccata tcagctcaag atatgatcga gatgcaagta aagaactatt aatagaagca
     4321 aaaactattt ttgaaaatac tgaaatagct tatgacttag ctgtttttcc aattggagag
     4381 tgacaaaatg aacccttttt tgaagaataa aacggtttta attaccggag cttctaacgg
     4441 tcttggagct gaaatcgcaa gacaagttgc tatgtccggt ggtaatgtta ttataacagc
     4501 cagaagtacg aaaaaattaa tagaattaca aaaagatata catgataatt tttcagtaga
     4561 agcgacttat tttactttag atatgactga ttttgagcaa gtgaaacaag tcagcgcaga
     4621 gataaatgca tcctatcaaa ttgatgtgtt agtcaactgt gcaggttttg gtttatttga
     4681 aaatgcggta gatattccat ttgagacaat tgaaaaaatg tttgatacga atgtacttgg
     4741 cttaattcaa ctcacacaac tgattttacc gcaaatgcaa gcgcgcaaag ctggacatat
     4801 tattaatatt gcttcccaag ccgctaaaat cgctacacct aaatcaaccg tttattcagc
     4861 cacgaaatat gcggttttag gcttttctaa tgcacttcgt ttagaactaa tgccagataa
     4921 aatccatgtt acaacgatta atcctggccc gattgccaca aactttttcg atgtagcgga
     4981 taaatcagga aactatttag aaacagttgg caaattagtg ttaaagccag aaaaggttgc
     5041 gcgtaaaaca gtacaaatta tgggaactaa gcgtcgcgaa atcaatttac cttttgtaat
     5101 gaacattgca acacgacttt atcaagtaat gccacaagtt atcgaattct tcggtaaagg
     5161 tgcattttta aagaaataaa acagaagaaa atatcttatg aaaatagggt atttttttct
     5221 tgtaattaat gaggataacc tttataattg aataagaacg tttgttcgtt tcagaggaga
     5281 tgcagttatg gatacgagta gaaaaattat tcatattgat atggacgctt tttatgcatc
     5341 tgtggaacaa cgcgaccatc ctgagtttcg agggaagcca cttattattg gtggagaccc
     5401 taataaacgc ggagttgttg cgacttgttc ttatgaagcg cgcaaattcg gtgtgcattc
     5461 agctatgccc accaggcaag ctgctaaact ttgtccgaac ggtattttta ttcacggcaa
     5521 tatggctcat tatgtagagg tttctaatca aatccgcgag atcttttcca gatatacgga
     5581 tattatcgaa ccgctctctt tagatgaagc ttatctggat gtaactgaaa acaaaaaagg
     5641 aatgaaatcc gccacaatgg ttgcacgcga gattcagcag acgatttacc aagagcttgg
     5701 tctaactgct tctgccggcg tatcatttaa taaatttatc gcaaaaatcg cttctgattt
     5761 taagaaacct gctggtatta cggtagttac accagaagaa gcagaagcct ttttagaaca
     5821 aataccagtc actaaatttt atggggtagg gaaagtaacc gcagaaaaat tgcatcgttt
     5881 aggaattgaa acgggagcag atttgaagaa gtggagcgag tgggacctta ttcgcgaatt
     5941 acacaaacat ggctatcatt tatatcgaca tgttcgaggt cgttctaaca acattgtgaa
     6001 tccgcatcgt gatcgcaagt ccgttggtaa agaaactact tttgaattta atgtgttaga
     6061 tagccgagtt ctcgaacaaa gcctcatgca atttgccaaa aaagtagaag aacggctcat
     6121 taaactacaa aaacatggta agacggtagt actaaaacta cgctacagtg actttacaac
     6181 cattactaag cggcttactt taaacgaata taccaatgat gcaagtcaaa tttatcaagc
     6241 ggcggccctt cttttaagag aaagctatac tggtcaggat agtattcgtt tgattgggct
     6301 tactgtaacc aatttaaaac ccgtttattt tgaaaattta cgtttagaag gactataaaa
     6361 aaggctagca cgatttaggt gctagccttt ttgattattt catttccagt aaacgttctt
     6421 taagttcttg ttccattgtt acaagttctt tctctgctac ggcacgttta gcacggcctt
     6481 cttgttggat tttaagcgtt tcttgcaagg tttcaattaa gctggactgc gtttctttaa
     6541 gtgtttcgat gtctacgata cctctttcgt tttcacgcgc tgtttcgata gcgtttgttt
     6601 ttagcatatc ggcgtttcgt tttagaagtt cgttcgttgt ttcagaaact tggcgctgag
     6661 ctgctacggc ttgttgttga cggagcaagg taagcgcgat agctacttgg tttttccaaa
     6721 gtggaatcgc agtcataatg gaagactgga ttttttcagc aagtgcctgg tttgtatttt
     6781 ggattaagcg gatttgcggt gcttgttgga tagtgatttg acggcttaga cgtaaatcat
     6841 atactcgttt atccagacgg tcagcaaatt gcgttaagtc attcacttct tggtaatcca
     6901 tttggtcgcc agtttgttct gcttttttgc gaagttctgg gagcattttt gtattaattt
     6961 cttctaattt taattctcca gcagcaatgt agatgttaag tgcttggaag taatctttat
     7021 ttttatcata aagctgttct aggaaagagt tatcttccat taaacgcttt ttggaatgtt
     7081 ccagtttcaa cgcgatgcgg tcaatttggg taccaatttt ttgatattta gaagtaattt
     7141 cgttgatgga ttgttttact cggtggaaca ttttagtgaa aacattttta ttacgagcgg
     7201 caagttcatc gggatccgct tcttgtaaac gatacattaa atcgctaata atatcgccaa
     7261 ttggtccaac atcttgcttt tgtacatgtg ctaacattga atgagaaaaa tcgtggagtt
     7321 tggcttgggc tggagctccg tatccaagaa tcgctgcttg atttccaggt tcgatttgtt
     7381 tggataactc taatgcttgt tttttatttg tttcagtaag catatcgaca aggcgaggag
     7441 ctgcatctgt ttcattattt acgatacttg cagctgattc accatctgat ccaaacgggt
     7501 tagcaaggag atcatctaac gtttggttga attctttctc aactactaaa tcttttaatt
     7561 catttgtttc ttcacttggc ttgttctcgg tcatcttttg tacccctttc aaatttcttt
     7621 ttctgtttag aaatggagtt tttcgctact tctagttcga agtcaaggtt gttcacatct
     7681 tgattcaaaa gtgtaaataa atccttttca ataacacgac ttaaatcatt taaaagtgtg
     7741 cgcgtatcag aaagtgtttg atagattttt ttgtctttta cgggttgttt ttctaagaaa
     7801 gcatattttt ctgttagctc cactaaagag tcaagatggg agaaaaagaa atcttctgct
     7861 tcataaaaac gttttggctc atcttttaca atgccataaa ttctttttgt aagtaaaagt
     7921 gttttgttac gctcttggaa agaatataac gctttgtttt gagtcatgat tttttgaagg
     7981 cggataattt tcacacgtgc ctcttctaag ttagtgcgaa tatatttata ttctttcttg
     8041 gttaatccag ttgcaatcat ttgcgcacgg tccccagctt tagatgaaaa gaaaaatagg
     8101 atagccgcaa cagcgataac aattgctgca attaccaaac cactatggat tagtgaagtg
     8161 aggataccag ccaaaagcat gacaaggaaa atggaacctg tgaatgctaa tatcttttta
     8221 aaaacggtca ttatacatct tctcctttaa gtacctgttt aaaaggtccg cttttcttat
     8281 agtaaatttt tctaaaataa agattgatgg aaattaacct accatttaag tatattttgt
     8341 aagcgaaaac taggcaagct gaatggtttt tatattttag aaattgtcct ttatttgttc
     8401 ttatcatacc atatttagaa aatagatgtt atcagtcgtg cgatgtaaat taaactcgga
     8461 cttagttatg ttataatgaa aaaaatgaga ggtaggtggc agaaatggac tcactagagg
     8521 aaaaaacgct tcatacagaa aagattttta gcggaaatat tattgaattg caagtagatg
     8581 atgtggagtt accaaacggg gaaaagggca agcgcgaaat cgtcaagcat cccggtggtg
     8641 tggcaattat acctttttca gcagatggaa gaatgtactt agtagagcaa ttccgaaagc
     8701 cactcgaaaa aaacattatc gaaattccag ctggcaaaat ggagccaggg gaagatccgc
     8761 tcgtgaccgc aaaacgggaa ctagaagaag aaactggttt tcagtccgat gatttaacgt
     8821 atctcacttc tttttataca tcacctgggt ttgctagtga acttttatat atttatgtag
     8881 cgcgtgacct ccggaaaatg gagcatccat tggcgcaaga tgcagatgaa tttattaatt
     8941 tagtcaaagt aacgctggaa gaagcagaac aattaatagc acaacaatgc attcatgacg
     9001 caaaaacaat gtacgcgata cagtactgga aaatgcaact attaatagaa gaaaatgaat
     9061 aaatcggatg aaaaactcat ttgggaatac ttggcataaa gaatggaaat gtggtatcat
     9121 aaacatgaaa agagagtcat gcaagaacat gaccctcaaa tgtaagcccc atttaaggtg
     9181 gcagctagtc taatatggta taaaaataac cactaaactc gccaaagttt atgagtggtt
     9241 atttttttgt gttattttga ctgtttagta acaacattaa agttgtaaaa gcgactgcaa
     9301 aagagagtgc ttcataaacg gtcatgggtt atcctttcca ggagttccta acaaaaaagt
     9361 cataggcatc cccctttcat gttgaaagag ctaacatgaa aacagtaatt tgaatacttt
     9421 tactggatac agtcttacag atttttattg tgttatggtt cttaattgac tacctggtca
     9481 aaagggatta tactctagtt gactaagtgg tcaatttgag tgtggaggag agaacatgga
     9541 agcaattaaa gtggagtcgc tcacaaaaaa ttaccataaa aagcgagcaa ttgaaaatgt
     9601 gaatttgtct gtaaatgaag gagaacttta tggttttatc ggtccgaatg gtgcggggaa
     9661 atcaacgaca attaaagtct tactgaattt tatttacgca acaagtggga gtgcgacggt
     9721 tctcgggaaa gatgtggtga aagactctgc tgaaattaag aaaatggtcg gttatgtgcc
     9781 aagtgaagtt cgctattatc cccaaatgac agcaaatgat attatccatt acgctgccaa
     9841 gttccatcat attgaaaatg caacgcaaaa aatgaataaa tattatgaaa tgttttcgat
     9901 tgatccgaaa aaacgctttg gagaaatgtc gcttggaaat aagaaaaaag tggcgattgt
     9961 tgctggactt attactgagc cggaattatt tattctggat gaaccgacga atggccttga
    10021 tccgttaatg caacattatt tatttaaaga aatgactgag cgaaataaag aaggaatgac
    10081 gatttttctt tctagtcata atttacgtga ggttcaggaa tattgtacaa gagctgcttt
    10141 tattcgaaat gggaatatta tcgcggtgga agatatcgct aatcaacaaa tgacgggtaa
    10201 agtaatcgcg ctgaaaggaa cgaatttgcc actggaaaaa ttaacgaatg cgggcgcaag
    10261 aattatcgaa aaggaagcgg gaaaagcgcg gcttattttt gatgatgata ttaagacgat
    10321 tttgccatta ttacaagaaa aagaaattac ggatttaacg attactaatc aagagctgga
    10381 agataaattt atgacgctat acgaaggggg agaaatcaag tgaatatcct acacattgag
    10441 tggaaaacgc gaataaagag tctggttgtt tgggctgttg tggtgattgt gattttaggg
    10501 gtgtttatgg ctttcttccc tagtatgcaa agtagtggaa tgcaagattt agtgaatacg
    10561 aagatgaatg cacttccgca agatatgatg aaaattttgc atatggattc aatggcggat
    10621 ttaacgaata ttgatgccta ttttgcgtat gtttttcagt atatttttat tgcagcttgt
    10681 gtgtatgcag cattaattgg tgcgcaggcc ttgataaaag aagaaacgga tggaacaatt
    10741 gaatttttat atgcgcaacc aattacgcgg tctagtcttg ttttttggaa aatgattggg
    10801 aatttattgt catttgtggc tttttgggtg attacatttg tagcttcagt ggcgctagtt
    10861 cttttcttga agccgagtgg ggttgacgga ggaaacttag taatggagct tgtacgagtg
    10921 ttttctagtg agttgctagt ggctgctgta tttatgagtg ctggttttat ggtttcatcg
    10981 gtgcttcgtt ccgctaagca agcttctccg gttgcacttg cgcttgtgtt cttaacgtat
    11041 attttaggaa ttatggctgg gttgaatgat aaggtcgatt tcttccaata tttttcacca
    11101 attaactatg caattccgtc tgagattatg gataaaggga ttacaggaac caatgcactg
    11161 atttcttgtg gggtaattgt tgtgatggtt gctatgacat ttgttcttta taagaaaaag
    11221 gatttgaaag tataatggat gaaaaacgat taaaaatttt agaagtagca atgggagaat
    11281 ttacggaaaa aggatatcag gcggctagta cgaataaaat ttgcgcaaaa gctggtgttt
    11341 ccaaagggct gatttttcac tattttggtt ctaaagaaaa gctttatatt gcggctgtta
    11401 gttatgcggt tgattttgcg accaaggagg ttcgtttgga aggggaacat tggggagact
    11461 ttgtcgaaat ggcgatttgg tcaacgaaga tgaaactgga ttttaatcgc aaatatcctg
    11521 ctgtgtttgg cttaattatg caagcttatg gaaatccgcc agttgcattg aaagataaac
    11581 ttgagggctt ttttgataag gcgattgagc gatcagaggc gcaaatgaat caagttttaa
    11641 gtgaaatgaa gttgaaaaaa gatgtaaata tggatgcagc gcgtaaagtg atggcggctc
    11701 tttttaaaca tattacggag attagtacag tttatttgca gagccatcca aatgcgacga
    11761 tggaagattt tgttccgctt gcgaaggatt ttacggaaat gatgcgaatt gtcgaatttg
    11821 ggatatgcga agaaaaaaag gatttgggcg agtgagccca aatccttttt ttaaccaata
    11881 aagctttcgt gatgcgtgct aatcatcgct tcatctgcgg cagttggttc taaatatttt
    11941 ttcgcactat taatcgcgat gggcccttca tgaagtcccg ctgcgataat gcgtattttt
    12001 cgagggtaag tcgcactatc tccacaagcg aaaataccag gaaccgtcgt tttcatctcg
    12061 tcatccacga caatgccaaa atctgcttgt tcaaagcccc attccgccat ggttccaagg
    12121 tctactttta ccccgtgatt aatgaaaagt gcgtctgttt gaattgtttt cgtggcttgg
    12181 gttttattgc agcaaacatt gattttggtt aactgattgt ttgttccgat tagttcattg
    12241 atttcatggt ggatatggat ttcgacgcga gaattttgaa gttctcggac actttcctcg
    12301 tgtgctttaa aatcttcgcc acggtaaata aggtgtactt gtttggcaat gggttcgagt
    12361 gtctgagccc agtcgatagc ggaatttcca ccaccagaaa ccactactac tttatcgcgg
    12421 aattgctcga tatttttgac atcataatgg attgcaaatg gaaaatcttc agcatgtaga
    12481 gcttcaagtt tattgacctc aaacgtgcca ctacctgtag caatgacaat cgtttttgaa
    12541 aaatgaatcg aaccgttatg cgaagttaat tgaaaagtgc catctgatag ttttgtcaca
    12601 tcgacaactc gctcactgca aacaatagtc ggatgaaagg tttctgcttg ttgttttaaa
    12661 tttgcgacaa gattttcgcc ggtaatggcg ggaataccac cgatatcgcg aatgattttt
    12721 tctggaaaaa agtagcgaac tttcccgcca acagcaggtt cagcatcgat aatttttgtt
    12781 ttcatggaac gaagcccact ataaaatgcg gagaataggc caatgggacc gccgccgata
    12841 atggttacat cataaacctc atttggcact ggaatcaagc tcctttacaa tttcgcatcc
    12901 gttgcaagtt tcgtagggga ggcaaagagg gacaccgctg cggggatcaa ttaaaatatc
    12961 tgctttgata ttaaaaacat cctctaaagt ttgttcagtc atgacattgg ttggtgttcc
    13021 ttctgcgatg actttccctt ctttaatagc gatcatatgg tgagcgtaac gagatgcgtg
    13081 atttaaatca tgaacaacca tcacaattgt gcggttctct gattgattta attgtttcaa
    13141 taaattaagt acatctagtt ggtgcgtcat atctaaaaag gtcgtcggtt catcaagaaa
    13201 tagtacatct gtttcttggg caagcgccat ggcaatccat gcacgctgtc gttgtccacc
    13261 tgataaacta tcaattggtc gatccgctaa ctccattaaa ttcgtcacgc gcaatgacca
    13321 aaaaataatt tcgcgatctt ttgcggtaat cgatttaaag ctactttgat gtggggaacg
    13381 tccataagaa attaattcaa acaccgttaa accatcaggt gcagaaggat tttgtggcaa
    13441 aatagctagt tgtttggcaa cgtctctcgt tggctgacta tgaatcgtct tgccatctaa
    13501 atacacagcg cctttgctag gtttcattaa gcgggacatc gtttttaaaa tagtcgattt
    13561 ccctgagcca tttgcaccta ctaaagcggt tattttattc gctggaatgg ctatatctaa
    13621 accatcaaca atgattcgtt tgtcgtatga aatttgtaag ttatcggtat gaaggtcttt
    13681 cattttcatc gctccaattt aaaggtaagg tgataatcat tctcaatggt taagtataga
    13741 gtttttatgg tgaagatgca agcgttactt tgccgaaatg atttgcactt tgtgaataaa
    13801 gttgctatac taattgagaa ttattatcaa ttactggagg ggttcaattg aaaaagggta
    13861 tcattttact cgtgtcaatg cttttaattg cagtggtttt aactgcttgt ggagataaca
    13921 aatcggctgg aaaagagaag gtcgagatgc gtacatatac aatggcaaat ggaaagaaag
    13981 tagaaatacc agcacatccg aaacgtattg tggcttcgga atatctaggg aatattgttt
    14041 tgcttggaat gaagcctgtg ggggctagag cgaaacaaat ggaaaatccg tttttgaaag
    14101 ggcgtgtgga tgggattgca gatattggtg atccagtttc agcagaaaaa gtggcggaat
    14161 taaaacctga tttaatcatt gtttcaaacg atgacgaatt tgaggcaatg tcgaaaattg
    14221 cgccaacggt gttaattccg tacgcaactt caaaaaatgt ggaggaagac gttcgccaaa
    14281 tcgcggactt agttggagaa aaaaaggctg gagaggcgtg gctagataag tttcatcaaa
    14341 aagccaaaga aagtagagcg aagttggctg gcaagttaga tccgaatgaa acagtaggga
    14401 tttatgaagt acaagataaa gatttttatg tgatgggaca aaatatgggg cgaggtggtc
    14461 aagcgattta taatgcttta caactaaaag caccagcaaa aatacagaaa gatgttttag
    14521 atgggcaaga ttggcaaaag atttcactgg aagttttacc tgaatttgcg gccgatagaa
    14581 tgttcgttac aagcacttct tctgggagtg ctaaagacgg cgagaaaaca ttaaaagatt
    14641 taacgaactc gccaatttgg aaaaatctgc cgacgtttaa agcagggaat gtttaccaaa
    14701 tggactttga cacgatgttt tattatgatc cattagcggt agaaggacag ttggatatta
    14761 ttgtagagaa gttacttgcg tccaactaat gattgcgctt agtgaatgat attgatataa
    14821 ttttctttgc gattgataat tattatcact taaaatgagc ggataattta gatggaagga
    14881 acatgtgcag atggataagt caaaacagat aaaaatgaat acaagaccga ctgttgctaa
    14941 attcatactt tcgggtggga ttttgttgct tctcatttta gcgttattcg ggattgcggt
    15001 tggtgcagcc gatattaatt taagtacggt ttgggatgca ctttttcatt ataatagttc
    15061 ggatacgcag caccagatta tacgtagttt acgtgttcct cgggtggttg cggatatggc
    15121 gataggggct gcttttgcgg ttgctggagc gattatgcaa ggaatcactc ggaatccact
    15181 tgctgattca ggcttgcttg ggttgaatgc tggatcgacg tttatggtag cagtttgttt
    15241 tgcatttatg ccttggctta gttataattc gctcatttta ttttcttttg ttggggcggc
    15301 aattggggca tttttagtat ttggcgttag ttctcttgca gggagcgcaa tgtcgccaac
    15361 gaggctagtg cttgctggag cggcggttag ttcattgctt actgcgctta gtgaaggact
    15421 cgcgatttat tttcagttaa gtcaggattt ggccttttgg tacgcgggcg gggttgctgg
    15481 tgtgaaatgg agtcagcttg cggcgatttg gccttggtta cttggagcgc ttattgcggc
    15541 gattttgcta agtagatcga ttaccatttt aagcttaggc gatgatattg ctgttggttt
    15601 aggtgaaaaa actacttttg ttaaaattgc ttcgatggtt gtggtgttga ttttggcggg
    15661 gcttgctgtg tcggttgttg gtccggttgg gtttatcggc ttgattgtac cgcatttggt
    15721 acgattttta gttggagtag attatcgctg gattatccct tgctcggcgg ttgttggagc
    15781 ctttctgaca ttagcggcgg atattgtggc gagaacaatc aatccgccat atgaaacgcc
    15841 aatcagtgtt atttttgcat taatcggggt tcctttcttc ttatatgtag cacgtaaaga
    15901 aaggaggaac ttataatgta tatgacaacg gcagaaaaac gaaaaaaatc gcggcgagtt
    15961 tggacgttaa ttattttaag cgtgttaatt ttttgtacat ttacatatag tgtcaatgct
    16021 ggttattcga aattgccatt tttggaagtg attaagtcgt tttttggaat ggcggacgcg
    16081 ggaacacaac ttattgtgac ggagtttcgt ttgccacgga tagttattgc gctattagtt
    16141 ggtgcagggc ttgcggtttc aggaacaatc ctacaaggga tttctggaaa cggattagct
    16201 gatccgggaa ttcttgggat taataatggc gcgggacttg cggttatgct ttatatttcc
    16261 ttttttcctt ccacgatgga cgttccggtt ttatttatgc catttattgg atttgtcggg
    16321 gcaattttaa ctgcgtttgt tgtttacgga ctttcttata gtagaagcga aggattgttg
    16381 cctaatcgat tgcttcttac ggggattgct gttgcggcgg cgattgcggc acttatcaca
    16441 ctgcttacgg ttcggcttga tccgcaaaat tatcaacgct atgctgaatg gatggcagga
    16501 aatatttggg cttcaagctg gcaatatgtt tatgctcttt tgccatggct tattgtttta
    16561 ggtgcaattg cttttatgaa agtaaagacg ttggatgtgc tctcttttgg agaccaagtg
    16621 gcaaccggac tcggcgttcg ggttgagcga gaaaaatttg tgcttttaat agtagcagtt
    16681 ggtttggcag ctgcttgtgt atccgttagt ggcggtattg catttattgg tctaattggt
    16741 ccgcatattg ctagaaaatt agttggatcc gcacatcgct gggtgatggt aacggcggca
    16801 ctttctggag ggctactatt attacttgcg gatacgattg gacgattgat tattcaacca
    16861 tccgaaatat ttgctggtat cgttgtggca attatcggtg caccttattt cttgttcttg
    16921 cttgcaaaag ctaaataata attattattg ataacgagaa att
//
LOCUS       DASDXX010000045        16237 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.045, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000045 DASDXX010000000
VERSION     DASDXX010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16237
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.045"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..486
                     /locus_tag="U0280_001142"
     CDS             <1..486
                     /locus_tag="U0280_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide phosphodiesterase"
                     /protein_id="HEM2271096.1"
                     /translation="HTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFT
                     YQSQKLDMEAWAKAQGSTDENLLNFNQFDYETFYNSGYDKAMMDLMTDESYDKYNQAD
                     KEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVS
                     P"
     gene            complement(533..1519)
                     /locus_tag="U0280_001143"
     CDS             complement(533..1519)
                     /locus_tag="U0280_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4003 domain-containing protein"
                     /protein_id="HEM2271097.1"
                     /translation="MDSAYVFDSEQATKLLMKNYELVKTSGVSFIDKRIRFLIARLFA
                     GNNEVVNPEEFSEINKEIKRQLGMFTALNGNVRASLVGLLMANDNASRESVQQVIANY
                     NTLIQAGFQRTEYTYFAAYLLLESENPKKTAQKAKTIHQLFKKDHPFLTKSEDVTTAV
                     FLANLPEENTTKLAEITEYYFQEFAAKGFRKNDSLQFLATTGTLLYGEKDSKFIRRVD
                     NIVEELRQKGIKVKPLHYSSIGILAFVMDARKIDSGLVNLIDELQQQPGLRFGREFVT
                     ALAISLYTEKQSGQMSKEQLEGLMVNVHILIAMEQAAAVSAAAAASAAAASS"
     gene            complement(1625..2368)
                     /locus_tag="U0280_001144"
     CDS             complement(1625..2368)
                     /locus_tag="U0280_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar isomerase domain-containing protein"
                     /protein_id="HEM2271098.1"
                     /translation="MINNYIDITVRLLENILDNEADYVKEAGAKVAESIENDGVIHLF
                     GCGHSHILTEEVFYRAGGLAAIHPILHEPLMLHEGAAASSVLERKNDYAKTFMAEEDI
                     RPGDIMIVLSTSGRNPVPIDVAEIAREKGAFVIVITSLQYSASQKSRHTSGKRLSDTG
                     DIVIDNGAVKGDAVLKSANFDIAFAPTSTVTGAVILQSIFAEAIETMVNDNFTPPVFI
                     SGNVENADAHNQALVDKYNERIPLLGMNL"
     gene            complement(2369..3088)
                     /locus_tag="U0280_001145"
     CDS             complement(2369..3088)
                     /locus_tag="U0280_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxo-acid lyase"
                     /protein_id="HEM2271099.1"
                     /translation="MNKKKFENLPKWNNFALFNFLAKDKENSLEVMEAARGFAVPGIV
                     ATNYETAEEAANVVKELQTTAPVISVGLGGGGDWQNWRDVLHIARLAPNSHINQPIET
                     AGLTNDLLPETYTNALVRPTGKIGIVKLSSGDEITAEEAVDYCLSANIPSIKFMSIEG
                     TKYLDELVYLTKIAADKGIYGIEPAGGIGADNILEITTAIKSTGIPFYMPHIFGKTID
                     KATGRTKPEEIEKIFAALEGN"
     gene            complement(3048..3797)
                     /locus_tag="U0280_001146"
     CDS             complement(3048..3797)
                     /locus_tag="U0280_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEM2271100.1"
                     /translation="MLYADENSFDIGAKITKTKPVLLPIGAVEAHGPHLPLGTDNILA
                     SEYSAKIAAETSGFVLPVLPYGQVWSLQDFPGSLTLSNETVTKVVVEIGESLYKQGFR
                     LFVPVSGHLGNMAALKDAARELYAKYPDMVILHIFYPNIQKLAMDVREGNANHHTYIH
                     ACEIETSLMLYLSPENADMSRAIDDPPILPIDADFTPTPWQNFTKTAVLGEATLATAE
                     KGEYLIEKTLKTCVELIKLEQEKIRKSTEME"
     gene            complement(3810..4802)
                     /locus_tag="U0280_001147"
     CDS             complement(3810..4802)
                     /locus_tag="U0280_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase"
                     /protein_id="HEM2271101.1"
                     /translation="MSFIRTFYGDIAPEQLGFTYSHEHIVCVPAYWQERDADDLLLDD
                     KEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFNKSFLWD
                     GKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYN
                     MITPLEEKTIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDR
                     NLDPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTARK
                     TYYKHYGHGPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTFKK"
     gene            complement(4872..6170)
                     /locus_tag="U0280_001148"
     CDS             complement(4872..6170)
                     /locus_tag="U0280_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HEM2271102.1"
                     /translation="MEIITWIANNFFGTPAILLGFIVLLGLLLQKKNLSQVISGTFKA
                     IIGFLIINAGAAVITGSLGIFEPMWKEVFGLETPPLAGFLGQEAFNAKFGSAVTLAMT
                     LGFLVNVLLARFTPFKYIYLTGHMMFWTTTIFAGITVQAVGGDIPFWGLVLFLAVIMG
                     LYWTLQPAITQPFLRKITGNDNVALGHTSSSVAILSALLGKVFGNKKNDAEHINLPKK
                     LEFLRDSNVITALTMGILFVVGAVILMVKKTPGAEKLIAEAGNQSFIVYSIVQSFTFA
                     AGIAIVLVGVRMFIGEIVPAFNGIATKLVPGAKPALDAPIVYPYAPNSVIIGFVGAFI
                     GAIIWLVVLGNTVGYVFVPTMIVLFFHGAVAGVFGNSTGGVRGALIGGFLTATVVAWG
                     QYIMVTFFINTTVPDTAMWAADSDMFILGPIVSMLAKLFF"
     gene            complement(6197..6469)
                     /locus_tag="U0280_001149"
     CDS             complement(6197..6469)
                     /locus_tag="U0280_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271103.1"
                     /translation="MKILAVCGLGQGTSLILRMNVETVLRDMGVDADVEHIDVSAARS
                     MNVDIIVTSQELAETLGTDTSAKVVIVNNYFDNAEIKTALSEAINS"
     gene            complement(6472..6906)
                     /locus_tag="U0280_001150"
     CDS             complement(6472..6906)
                     /locus_tag="U0280_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2271104.1"
                     /translation="MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMV
                     ESYHENGAYFVIAPQIAIPHARPTDGVENSAVSLVVLKEGVNFGHAANDPVRLVFGLA
                     ATSSEAHLKVIQKIVSLLSNNDNIEKLIHSEDYQAIGELVEG"
     gene            complement(7099..9165)
                     /locus_tag="U0280_001151"
     CDS             complement(7099..9165)
                     /locus_tag="U0280_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2271105.1"
                     /translation="MVQFDARNMALLESLVVANVYLAPEKLQEELGISKRTLQYDVEK
                     INKELDNIGLDGIQSVRGQGYYLLEDEKSTIKEILGNREASHKVFSASERRIRILFFL
                     LVTDARVIIDTINECNEVSRNTSLQDIKQLKLALKQFNLELAYDRKNGNMVLGDERSI
                     RQFFIHYCMNNEEIATADQLLDLMKINPMIKNQELFPKLDTIFEILAVTEKKIGIRYT
                     DEVLERIGIMIFFFKERMKRNCYLNEQEEHEVESFEIAQEIYQQLQQSENFKINHAEI
                     TYLGKLLLGASRLNDDAAAEGKLDLIVEKIIAEFERLACVNFEDHRNLKKDLLLHLQP
                     AYYRLKFQIEWINPLRTDIKQSYSDVYEITKKSLEPLEDLLGETIPEDEIAYVTILFG
                     GYLSRKNNTLVERKKLLIVCSKGVGTSRMIERQLSQLLGERVEILEPISIREFEKGLY
                     APDFIVSTLPIMEPKAPVFIVSPILTEAQKQQLMKAIAPHILQKDSDARMLSSVLDVV
                     DQYAKVEDREKLAAKLKSVLFQVQSDSQLEKSPTLEELLPKERITFKESVADWREAIL
                     VASKSLQQEGYISRNYQHAMIENIEKLGPYIVIAPGIALPHASVDDGAYRVGMSLLRL
                     NQPVSFSSKAKDQVKLIIVLASIDSYTHINALSQLTNLIMKHHLLEQIEQATSAAEIA
                     AMLTIQ"
     gene            complement(9320..10507)
                     /gene="tuf"
                     /locus_tag="U0280_001152"
     CDS             complement(9320..10507)
                     /gene="tuf"
                     /locus_tag="U0280_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM2271106.1"
                     /translation="MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGYADA
                     QAYDQIDGAPEERERGITISTAHVEYQTDSRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVDDEELLELVEMEIRDLLTE
                     YEFPGDDIPVIKGSALKALQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDV
                     FSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNI
                     GALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYF
                     RTTDVTGIVTLPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSN
                     ISK"
     gene            complement(10616..12703)
                     /gene="fusA"
                     /locus_tag="U0280_001153"
     CDS             complement(10616..12703)
                     /gene="fusA"
                     /locus_tag="U0280_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEM2271107.1"
                     /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VAVLDAQSGVEPQTETVWRQATTYGVPRVVFVNKMDKIGADFLYSVGTLHERLAANAH
                     PIQLPIGAEDTFEGIIDLIEMNALYYEDDLGNDPHIKEIPADLKDLADEYRGKLVEAV
                     AELDEELMMKYLEGEEITKEELKAGIRKGTLNVEFYPVVCGTAFKNKGVQPMLDAVLD
                     YLPAPTDVPAINGVLPDGEEAARHADDSEPFSSLAFKVMTDPYVGRLTFFRVYSGTLN
                     SGSYVQNSTKGKRERVGRILQMHANHREEISIVYAGDIAAAVGLKDTTTGDTLCDEKE
                     QIILESMEFPEPVIQVAIEPKSKADQDKMGQALAKLAEEDPTFRAETDQETGQTLISG
                     MGELHLDILVDRMRREFRVEANVGDPQVSYRETFRKSAQVEGKFVRQSGGRGQYGHVW
                     IEFGPNEEGKGFEFENAIVGGVVPREYIPAVQAGLEGALDNGVLAGYPLIDIKAKLYD
                     GSYHDVDSNEMAFKVAASMALRNAAKKCDPVILEPMMAVEVVIPEEYLGDIMGNITSR
                     RGRVDGMEARGNAQVVRAFVPLANMFGYATHLRSGTQGRGVYTMQFDHYEEVPKSIAE
                     EIIKANGGNNKED"
     gene            complement(12769..13239)
                     /gene="rpsG"
                     /locus_tag="U0280_001154"
     CDS             complement(12769..13239)
                     /gene="rpsG"
                     /locus_tag="U0280_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEM2271108.1"
                     /translation="MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILY
                     SAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLR
                     WLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW"
     gene            complement(13270..13683)
                     /gene="rpsL"
                     /locus_tag="U0280_001155"
     CDS             complement(13270..13683)
                     /gene="rpsL"
                     /locus_tag="U0280_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEM2271109.1"
                     /translation="MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD
                     LPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK"
     gene            complement(13876..15273)
                     /locus_tag="U0280_001156"
     CDS             complement(13876..15273)
                     /locus_tag="U0280_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEM2271110.1"
                     /translation="MKWDKLLNDKRRRESGVTRSKNTDVRSAFENDFQRIVMSASFRR
                     LQDKTQVFPLEKSDFVRTRLTHSMEVSTIAKSMGNMVTHTIQEENLDKDFTKDHADKI
                     PEILACAGLLHDMGNPPFGHFGEESIREWFRDNLATITYKNKNLAEILTPQMKEDFYY
                     FEGNAQVLRVVSKLHYLFDQYGLNLTFATLNAVIKYPVSSLKVNKKQIKSKKLGYFYA
                     DESLFNEITTATEALDNRHPLTYLLEVADDIAYLNADLEDGVKKGIVNITQILKGFEE
                     VEEHNKVTAACYNELKKKSERYEGQEESFIVQQWLASNVRGQLINRSLEVFYENYDAI
                     MAGTFNDSLIDASSAEQLVQILQSLSFTYIYQDKGIVESEIAGNEIISKLLETFIPAV
                     IYYDSETPERQTAKDKRLLTLISDNYLGCYRKNAEGESETMKLYLRLLLVTDFICGMT
                     DSYAKDLYQRLNGLS"
     gene            complement(15289..15768)
                     /locus_tag="U0280_001157"
     CDS             complement(15289..15768)
                     /locus_tag="U0280_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271111.1"
                     /translation="MTQLVFRNGTEQDTTLILRFITELAIHEGIEKDVVATESGLHKA
                     LFQEKSAEVIIAEYEGEPVGFALFFHNFSTLLGKKGLYLEDLYIIPEMRGKGFGTKFF
                     SYLSKLALSRDCGRFEWWCLNENKSGMDFYEKIGAEKMSEWTVHRLTKAEMKKISNL"
     gene            15928..>16237
                     /locus_tag="U0280_001158"
     CDS             15928..>16237
                     /locus_tag="U0280_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat protein"
                     /protein_id="HEM2271112.1"
                     /translation="MLQRRFWGIFCFAIFLFLFPTIGSAETSGDYEYTINGNEATITD
                     YTGQSTDITIPTTLGPNNEYTVTAIGNGAFKSKRLTNVTIPNTVITIGDGAFTINSLE
                     Q"
BASE COUNT         4428 a         3417 c         3097 g         5295 t
ORIGIN      
        1 catacgcaaa atatccgctc tgcgaaaagc acagatggca aagaaattac cgatatcgta
       61 accaatgctc tttctgtttt cccgcataaa tatggcaata ttacttatag tgccaaaaac
      121 aaaaacttca cgtatcaatc tcaaaagtta gatatggaag cttgggcaaa agcgcaaggc
      181 tctacggatg aaaacttgct taattttaat caatttgatt acgaaacttt ttataatagt
      241 ggctacgata aggcaatgat ggatttaatg accgatgaat cttatgataa gtacaaccaa
      301 gcggataagg aaaaaatggc agatacgatg ggattaaata acatgtattt cttcgccgga
      361 actgcccctc caaaatctga tggtatggct ttatgggatt ctgcaccgaa ttcatttttg
      421 aaagattacg ttttaagttc atccaatccg cctaagaaaa gtaatgacta ttatgttagt
      481 ccttaaatca taaaaaaact ggtagccgtt atggcttacc agtttttttg tattaactag
      541 atgcggctgc cgcactcgct gctgcagctg cactcaccgc agctgcttgt tccattgcaa
      601 tcaatatatg cacattgacc attaaccctt ctaattgttc cttactcatt tgacctgatt
      661 gtttttccgt atataggctt attgctagag ctgtaacgaa ttctcgtccg aaacgcaagc
      721 ctggttgttg ctgtaattca tcaattaagt tcactaaccc tgaatcgatt tttcgcgcgt
      781 ccatgacaaa agctaaaatc ccaatacttg agtaatgtag cggttttact tttatccctt
      841 tttgtcgtag ttcttctaca atattatcta ctcttcgaat gaatttgcta tctttttcac
      901 cgtacaaaag tgtccctgtt gttgctaaaa attgtaagct atcatttttg cggaaacctt
      961 tcgcggcgaa ctcttgaaaa tagtactctg ttatttcagc caatttcgtg gtattttctt
     1021 caggaagatt tgctaagaaa acagctgttg tcacatcttc acttttagtt aaaaatggat
     1081 ggtctttttt gaaaagttgg tgaatagttt tcgctttttg ggctgtcttt ttgggatttt
     1141 ctgattctag taataaatat gctgcaaaat aagtgtattc tgtgcgctgg aatcccgctt
     1201 ggatcaatgt attataatta gcaattactt gctggacgct ctctcggctg gcattatcgt
     1261 tcgccatgag caatcctacc aaggatgcgc gaacatttcc gtttagtgca gtgaacatgc
     1321 ctagttgtcg tttaatttct ttatttattt cactaaattc ctctggatta accacttcat
     1381 tattccccgc aaaaagacga gcaattagaa atcgaattcg tttatcaata aaactaacgc
     1441 cactcgtttt tactaattca tagttcttca ttaataattt cgttgcttgt tcgctatcaa
     1501 aaacatatgc tgaatccatc ggccgcactc ctttatcatt tttatatagt ttaattatat
     1561 cgcaatctat agaaatactc taacatagta aaaaagtcta ggtgctaacc tagacttttc
     1621 tttcttataa attcattcca agaagcggaa ttcgctcatt atatttatca acaagtgctt
     1681 gattatgtgc atcggcattt tcgacatttc cactaataaa tactggcggt gtgaagttgt
     1741 cgtttaccat tgtttcgatt gcttctgcaa aaatagattg caagatgact gcgcccgtta
     1801 ccgtcgatgt tggggcaaat gcgatatcga agtttgccga ttttaggacg gcatcacctt
     1861 tgacagcacc gttatcaatt acaatgtccc ctgtatcaga taaacgtttt ccggatgtgt
     1921 ggcgggattt ttggctagcg gagtattgga gcgaagtaat gacgatgaca aatgcacctt
     1981 tttcacgggc aatttcagca acatcaattg gtacagggtt tcgtccggac gtcgatagca
     2041 caatcatgat atcgccagga cggatatctt cctctgccat aaatgttttc gcataatcat
     2101 tttttcgttc cagtacagat gacgccgcag ctccttcgtg aagcataagt ggttcatgca
     2161 aaatcggatg aatcgcagcc agtccacctg cgcggtaaaa tacttcctct gttaaaatat
     2221 gcgagtgacc gcaaccaaat aaatggatta ccccgtcgtt ttcaatagat tcggctacct
     2281 tcgctcctgc ttcttttaca taatcagctt cattatcgag aatgttttct aataaacgaa
     2341 ctgtaatatc gatatagtta ttaatcattt aattcccctc caaagctgca aaaattttct
     2401 cgatttcttc cggtttcgtt cggccagttg ctttgtcaat tgtttttcca aaaatatgcg
     2461 gcatataaaa gggaattccg gtggacttga tggcggttgt tatttcaaga atattgtcag
     2521 ctccaattcc tcccgctggc tcaataccgt aaatgccttt atcggccgca atttttgtta
     2581 agtaaactag ttcatctaaa tatttcgtgc cttcaatgct cataaatttg atggacggga
     2641 tgttggcgga tagacaataa tcgacagctt cttcagcggt aatttcgtct ccggaagata
     2701 gtttgacgat gccgattttc ccggttggac gaacaagtgc attagtgtat gtttccggaa
     2761 gtaagtcatt tgttaatccc gcggtttcga ttggctggtt aatatgactg ttcggagcca
     2821 gacgagcaat atgaagcaca tcacgccagt tttgccagtc tccaccgcca ccaagaccaa
     2881 cactaatgac gggggctgtt gtttgtaatt ctttcaccac atttgcggct tcttctgctg
     2941 tttcgtagtt cgttgcaacg attcccggaa cggcaaaacc gcgcgccgcc tccatgactt
     3001 ccaggctatt ttccttatct ttcgctaaaa aattaaatag cgcaaaatta ttccatttcg
     3061 gtagattttc gaattttttc ttgttcaagt tttatcaact ccacacatgt ttttaacgtc
     3121 ttttcaatca agtattcgcc tttttctgct gttgccaaag ttgcttctcc cagaaccgct
     3181 gtcttcgtga agttttgcca cggtgttggg gtgaaatccg catcgattgg taaaattggc
     3241 ggatcatcta tggcgcggct catatcggca ttttctgggg acaagtagag catgagagat
     3301 gtttcgattt cacaggcatg aatatacgta tgatggttag cgtttccttc gcgcacgtcc
     3361 attgctaatt tttggatatt cgggtaaaaa atgtgcaaga taaccatatc aggatatttt
     3421 gcatatagtt cgcgcgctgc atcttttagc gcagccatat tgccaagatg tccactcact
     3481 gggacaaaca gacggaatcc ttgtttatat agactttcac caatctctac aactactttc
     3541 gttaccgttt catttgatag tgttaaactt ccagggaaat cttgcaaact ccaaacttgg
     3601 ccgtatggca aaaccggaag cacgaatccg ctcgtttccg ccgctatttt cgctgaatat
     3661 tctgacgcta aaatattgtc tgtccctagt ggcaaatgcg gcccatgcgc ttcgactgct
     3721 cctattggca aaaggactgg ttttgttttc gtgattttcg cgccaatatc aaatgaattt
     3781 tcatctgcat ataacacaga tttcgcctcc tattttttaa aagtaaaaca tcttgctggg
     3841 ttatccacga agaatttttt aactaatttt tctccgtcaa agcctttttc gtttgcttca
     3901 tcaataaagc gtggcaccca ttttttggcg atatattcaa gtcctggtcc gtgaccataa
     3961 tgtttataat aagttttgcg tgctgtatca ccactaacta aaatttgatc ttcaaagcct
     4021 tccgaaacta gatatagaat cgctgcaatc cgagcgcttt ctggtgcgta tttgattttt
     4081 gcgatgccat caaatgacat gaatgcgcct gttttggcaa cttgcttgtg ataatacgga
     4141 tctaggttgc ggtccatatg accaatagaa aggtattcta acgggatatt ttcttgtttt
     4201 aaaatctcga tttgttctaa agccatcgtt cccgcttctg tgtgagaatg aattggtgct
     4261 tttgtctcgt gatgtgctct tgcaaccgca cgtattgtct tttcttctaa aggtgtaatc
     4321 atattgtagc cagtgccaaa tttcacctga ccagccttat acggcgttcc ttcaagccca
     4381 ttttcgactt catttacaac gaattccgtt agtttgtctg tagtagtatt ttcaatccat
     4441 tcatagtagg tttcaaaatc cccgatgatt ggtttcagtt ctggtttaat cttcccgtcc
     4501 cataagaaac ttttgttaaa gccagctgtt ccaacgattt ggatgcctgt ttctttggaa
     4561 atttgcgcca catcgagcac acgtctgccg taatcaaccg cggttgcatc gacaattgtt
     4621 ttgcctccta aatcggcgaa atcttgtaca tcaagttgtg atttttcttt atcatccaaa
     4681 agtaaatcat cggcatctcg ctcttgccag taagctggta cacaaacgat gtgctcgtgt
     4741 gaataagtga agcccagttg ttcaggggca atatctccat aaaaagtacg aataaaactc
     4801 attttttaaa acttcctttc aaaaaacctc ttcctcttga atgctagaca aggaagaggt
     4861 ttagatttta cttaaaagaa taacttcgct aacatgctga caattggtcc gaggataaac
     4921 atatctgagt cggctgccca cattgctgta tctggaacag tcgtattgat aaagaaggta
     4981 accataatat attgtcccca agcaacaacc gtagccgtta aaaatccacc tatcaaggct
     5041 cctctcaccc caccagttga gttaccgaat acaccagcaa ctgccccgtg gaagaaaaga
     5101 acgatcattg ttggcacaaa cacgtagcca actgtatttc caagtactac taaccagata
     5161 atcgctccaa tgaacgcacc tacgaaaccg ataattacgg agtttggtgc atatggataa
     5221 acgattggcg catctagtgc aggtttcgca cccggtacaa gttttgttgc aataccattg
     5281 aaggccggta cgatttcacc gataaacatc cgcacaccta caagaacgat ggcgatacca
     5341 gcggcaaacg taaaggactg aacgatggag tatacgatga agctttgatt tccagcttct
     5401 gcgattaatt tttctgctcc cggtgttttc ttcaccatca gaatcactgc accaactacg
     5461 aacagaatcc ccattgtaag agctgtaata acgttagagt cacgtaggaa ctctaatttt
     5521 ttcggtaaat taatatgttc tgcatcgttt ttcttattcc caaatacttt ccctagcaaa
     5581 gcggatagaa tcgctacact ggatgaagta tgtcctaacg cgacgttgtc atttccagta
     5641 attttacgta agaatggttg tgtaatcgct ggttgtaatg tccagtaaag acccataatt
     5701 actgctaaga agagtacaag accccagaac ggaatatccc cgccgacagc ttgcacagtg
     5761 attcctgcaa aaatcgtcgt tgtccagaac atcatatgac cagttaaata aatgtactta
     5821 aatggtgtaa atcgtgctaa taatacgttg actaaaaatc cgagtgtcat cgcaagtgtt
     5881 accgcactac caaattttgc attaaaggct tcttgtccta aaaagcctgc aagtggcggt
     5941 gtttcaagtc cgaatacttc tttccacatt ggttcaaaaa tcccaaggga accagtaata
     6001 acagccgcac cagcgttaat aattaagaat ccaataatgg ctttgaacgt tccgctaatc
     6061 acttggctta aatttttctt ctgtaaaagt aacccgagaa gtacgataaa acctaaaagt
     6121 atggctgggg ttccaaaaaa gttattggca atccacgtaa taatctccat ttttttccca
     6181 cctttttttg tcttatttaa ctattaattg cttcagataa tgccgtttta atttctgcgt
     6241 tgtcaaaata gttgttgacg atgactactt tggcgcttgt atctgttcca agtgtttctg
     6301 ctaactcttg gctcgttaca ataatatcca cattcatcga gcgcgcagct gatacatcaa
     6361 tgtgctccac gtctgcatct actcccatgt cgcgtaaaac tgtctctaca ttcattcgta
     6421 aaattaagct tgttccttgc ccaagtccac atactgctaa aattttcatc gttatccctc
     6481 cactaattct ccaattgctt ggtaatcttc tgaatgaatc aatttttcaa tattatcgtt
     6541 gttactaagc aaggagacga ttttttgaat gactttcaaa tgtgcctcac ttgaagttgc
     6601 tgcaagaccg aatactaatc gtacgggatc attcgcggcg tgtccgaaat tcacgccttc
     6661 ttttagtacg actagtgata ctgcagagtt ttccacacca tcagttggtc ttgcgtgcgg
     6721 aatggctatt tgaggtgcaa tgacaaagta cgcaccattt tcatgataag attccaccat
     6781 tttttctacg tactgctcgc tcacataacc tgcattaact aataattctc ctgcttgcac
     6841 gatagcttcg tcagcattct tagctgatcc atgcagattc acaagctctt tatccaaaaa
     6901 agacatatct cttcatccct tctaactaat tgatagcgct atcaataact tacactctta
     6961 ttatagctgt agcgcaactg tttaaaaaag cccaattcct ttcttttcga aagtgcaaaa
     7021 aatagactgt tacattttgt tgttagcgag catacaaaaa gccagcgcgg catcttggtg
     7081 ccccactggc tttcttgctt attgtatcgt taacattgcg gcaatttccg ctgctgatgt
     7141 cgcttgttca atctgctcta gcaagtgatg tttcatgatt aaattagtga gttggctcag
     7201 cgcattaata tgtgtgtagg agtcaatgga agcgagcaca ataattaact tcacttgatc
     7261 tttcgcttta cttgaaaatg atactggctg atttaagcgc agtaagctca ttccgactcg
     7321 gtatgccccg tcatccacag acgcatgtgg cagtgcaatc cctggcgcaa taacgatgta
     7381 tggtccgagt ttctcaatat tttcaatcat cgcatgctga taatttctcg aaatgtagcc
     7441 ttcttgttgc agcgatttcg aggcaactag gatagcctca cgccagtccg ccacactttc
     7501 tttaaaagta attcgttctt tcggtaaaag ttcttcgagt gttggagatt tttctagttg
     7561 gctgtctgat tgcacttgga acaataccga tttcagtttt gccgccaatt tctcgcggtc
     7621 ttccactttg gcatattgat ctactacatc aagcacagaa gacaacatgc gcgcatccga
     7681 gtccttttgc aaaatgtgcg gggcaatcgc cttcatcagt tgttgtttct gcgcttctgt
     7741 caaaattgga ctaacgataa aaactggtgc ttttggttcc ataattggca aagtcgacac
     7801 aataaagtct ggtgcgtata accctttttc aaattcacgg atggaaattg gttctaatat
     7861 ctctactcgc tcaccaagta attgcgataa ttgccgttca atcatccgcg acgttccgac
     7921 acctttggag caaacgatta agagtttttt tcgttcaact aaagtattat ttttgcgtga
     7981 aagatagcca ccgaacaaga ttgttacgta cgctatttca tcctctggaa ttgtttcacc
     8041 aagtaaatct tctagcggtt caagtgattt tttcgtaatc tcgtacacat cactgtaact
     8101 ttgtttaatg tctgtcctta gcgggttaat ccactcaatt tggaatttaa gccgatagta
     8161 ggctggttgt aaatgaagca ataaatcttt tttcaaattg cgatggtctt caaaattcac
     8221 gcaagcaaga cgttcaaatt cggcgatgat tttttcaacg atgagatcta attttccttc
     8281 agcagccgca tcatcattca aacgactcgc cccaagcaaa agtttaccta aataagtgat
     8341 ttccgcatga ttgattttaa aattctcact ttgctgcaat tgctgataaa tttcctgcgc
     8401 aatctcaaaa gattctactt catgctcttc ttgttcattt aaatagcaat tacgcttcat
     8461 tcgttcttta aagaagaaaa tcataatacc aatgcgctca aggacctcgt cagtataacg
     8521 aattccgatt tttttctccg ttactgctaa aatttcgaaa atcgtatcta atttgggaaa
     8581 taactcctga ttttttatca tcggattaat tttcattaaa tcgagcaact ggtctgcggt
     8641 tgcgatttct tcgttattca tacaatagtg aataaaaaat tggcgaatac tgcgctcatc
     8701 accgagaacc atattgccat ttttacggtc atacgcaagt tctaaattaa actgttttag
     8761 cgctaatttt aattgtttaa tgtcctgcaa acttgtatta cgactgactt cattgcattc
     8821 attaatcgta tcaatgatta ctcgcgcatc tgttacgagc agaaaaaata aaatacggat
     8881 gcgacgctca cttgctgaaa agactttgtg gctcgcttcc ctatttccaa ggatttcttt
     8941 aattgtcgat ttttcatctt ctaataaata atacccttgt ccacgaacag attgaatacc
     9001 atcgagtcct atattatcta attctttatt aattttttcc acatcatatt gaagtgttcg
     9061 tttggaaatt cctagttctt cttgtaattt ctcgggtgca agatatacat tcgccacaac
     9121 gagtgattcg agcaacgcca tatttcgagc atcaaattgt accacttggc ctacctcctt
     9181 gatttcggtc tagaaggtaa aaagatatgt ctactttaag gttatgcgaa aatgtgatat
     9241 ttttcaagtt aatttttatt tcaggcacaa aaaaaccgac aaagccaaat gactttgtcg
     9301 gtttgaatcg tatcaggtat tatttgctga tgttagaaac aacgccagcg cctactgtac
     9361 gtccgccttc acggatagag aatttagtac cgtcttcgat agcgattggt gcaattagtt
     9421 caactgcaag ctcaatgtta tcaccaggca ttaccatttc agtaccttct ggaagtgtaa
     9481 caataccagt tacgtcagta gtacggaaat agaattgtgg gcggtagttg ttgaagaatg
     9541 gagtgtgacg tccaccttct tctttagtta aaacataagt ttcagctttg aagttagtgt
     9601 gtggagtaat cgaacctggt ttagctaata cttgaccacg ttggatatct tcacgagcaa
     9661 caccacgtag aagtgcgcca atgttgtcgc cagcttcagc gtagtctagt aatttacgga
     9721 acatttctac tccagttact actacttttt tgctttcttc ttcaataccg ataacttcta
     9781 cttcgtcacc aactttaact tgtccacgtt caacacgtcc agttgcaact gttccacgac
     9841 cagtgattga gaatacatcc tcaactggca tcatgaatgg tttgtcagta tcacgttctg
     9901 gagttggaat gtaagaatct acagcttcca ttaactcgtc aattttagct tcccagtcag
     9961 cttcaccttg aagtgcttta agagctgaac ctttgattac aggaatgtca tcgccaggga
    10021 attcatattc agttaataga tcacgaattt ccatttcaac taattctagt aactcttcat
    10081 cgtcaaccat gtcacatttg ttcatgaata caacgatgta tggaacacca acttgacgtg
    10141 aaagtaagat atgttcacga gtttgtggca ttgggccatc agcagcagat actactaaga
    10201 tagctccgtc catttgtgca gcaccagtga tcatgttttt aacgtaatcg gcatgtcctg
    10261 ggcagtcaac gtgtgcatag tgacggctgt cagtttggta ctcaacgtga gcagtagaga
    10321 ttgtgatacc acgttctctt tcttccggag caccatcaat ttggtcataa gcttgtgcat
    10381 cagcatagcc ttttttagca agtacagttg taattgcagc agttaaagtt gttttaccat
    10441 ggtcaacgtg tccaatagta ccaatgttaa catggggttt agagcggtca aatttttctt
    10501 ttgccatttt aaaatatcct cctcgataat tcgataatta ttttttactt agcttaaatt
    10561 taaactaagt aatacttcta actaaagtta tacttgatgt tgcgaaaaaa atcaattaat
    10621 cttctttgtt gtttccacca ttagctttaa tgatttcttc agcaatagat ttaggaactt
    10681 cttcatagtg gtcaaattgc atagtgtata caccacgacc ttgcgtacct gaacgaaggt
    10741 gagttgcata accaaacatg tttgcaagtg gtacaaatgc gcgaacaact tgagcgttac
    10801 cgcgagcttc cataccatct acacgaccac gacgggaagt aatgttaccc atgatatcac
    10861 caaggtattc ttctgggata acaacctcta cagccatcat aggctcaagg attacaggat
    10921 cacatttctt agcagcatta cgtaatgcca ttgaagcagc cactttgaag gccatttcat
    10981 tggaatcgac gtcatggtaa gatccgtcgt aaagttttgc tttgatgtca atcagtgggt
    11041 agcctgcaag tacaccatta tctagtgcgc cttcaagacc tgcttgtaca gctgggatgt
    11101 attcacgtgg aacaacccca ccaacgattg cattttcaaa ttcaaatcct ttaccttctt
    11161 cgtttggtcc gaattcaatc caaacgtgac catattgtcc acgtccaccg gattgacgta
    11221 cgaatttacc ttcaacttga gcagatttac ggaatgtttc acgataagaa acttgtggat
    11281 caccaacgtt agcttcaacg cggaattcac gtctcatacg gtcaacaagg atgtcaaggt
    11341 gaagttcacc cataccggag ataagagttt ggccagtttc ttggtcagtt tcagcacgga
    11401 aagttggatc ttcttccgct agtttcgcaa gagcttgccc cattttatct tggtcagctt
    11461 tcgatttagg ttcgatagcg acttggataa ctggttctgg gaattccatg gattctaaga
    11521 taatttgttc tttttcatca cataaagtgt ccccagtagt tgtatcttta agtcctacgg
    11581 cagcagcgat gtcaccagcg tatacgattg aaatctcttc acggtgatta gcgtgcattt
    11641 gaaggatacg tccaacacgt tcacgtttac ctttagtcga gttttgtaca tatgaaccgg
    11701 aattcaaagt accggaataa acacggaaga aagttaagcg tccaacataa gggtcagtca
    11761 taactttgaa tgctagggaa gagaatggtt ctgaatcatc agcgtgacga gcagcttctt
    11821 ctccatcagg caatacgccg ttaatagctg gaacatctgt tggtgctgga aggtaatcaa
    11881 gtactgcatc taacattggt tgaacacctt tgtttttgaa tgctgtacca caaactacag
    11941 gatagaactc aacgttaagt gttcctttac ggataccagc tttaagttct tcttttgtaa
    12001 tttcttcgcc ttctaggtat ttcatcatta gctcttcgtc aagttcagca actgcttcca
    12061 ctaatttacc gcggtattcg tctgctaagt ctttcagatc agctggaatt tctttaatat
    12121 gagggtcatt tcctaaatca tcttcgtaat acaacgcgtt catttcgatt aagtcaatga
    12181 taccttcaaa tgtatcttcg gccccgattg ggagttggat tgggtgcgcg ttggcagcca
    12241 aacgttcatg caaagtacct acagaatata ggaagtctgc gccgattttg tccattttgt
    12301 tgacgaatac tacacgagga accccgtaag tagtagcttg acgccaaact gtttctgttt
    12361 gtggttctac accagattgt gcatctagaa ccgcaacagc accatcaagt acacgaagcg
    12421 aacgttcaac ttcaactgtg aagtctacgt gtcctggtgt atcgataatg tttactcggt
    12481 agcctttcca ttgagctgtt gtcgcagcag aagtgatagt aataccacgt tcttgctctt
    12541 gctccatcca gtccatttga gaagcacctt catgggtttc accaattttg tgaatacgcc
    12601 ctgtatagaa aaggatacgt tcagtagtgg tagttttacc cgcatcaatg tgggccatga
    12661 taccaatatt acgagtcttt tctaaggaga actctctagc catgttgtat ttctccttcc
    12721 ataaaacaat ttttcaggca atacgcctgg aatttgtcag tgattttttt accaacgata
    12781 gtgagcgaac gctctgttag catcagccat tttgtgtgta tcttcgcgtt tcttaacaga
    12841 agcaccagta ttattggcag catccatgat ttcgcgagca acacgtactt ccattgtttt
    12901 ctctccacga aggcgagcat aatttactaa ccaacgaaga ccaagagtag aacgacggtc
    12961 agcacgtact tcgataggta cttgatagtt agcaccacct acacggcgag ctttaacttc
    13021 aagaagaggc ataatgttct tcatagcttg ttcaaatact tccatcggat ctttaccagt
    13081 ttcttgtgca atgatatcga atgcggaata taggatagct tgagactttc cacgttttcc
    13141 gtcaaccatc attttattaa ttaaacgagt tactagtttc gaattataaa tcggatctgg
    13201 taacacgtca cgtttagcaa caggaccttt acgaggcatc ggatatcctc ctttcatatt
    13261 ttataagtat tattttttag gttttttcgt accgtattta gaacggcttt gtcctctatt
    13321 ttcaacacca gctgtatcaa gcgctccacg aacgatatga taacgtaccc ctggtaaatc
    13381 ttttacacgt ccaccacgaa taagaacaac actatgttct tgtaagttgt gaccaatacc
    13441 aggaatgtaa gctgttactt caataccatt actcaaacgt acacgggcat atttacgaag
    13501 cgccgagtta ggttttttag gagtcatggt accaacacga gtacatacgc cacgtttttg
    13561 cggagagtta acgtctgtta gttctctttt aaaactgttt aggcccttgt tcaaagcagg
    13621 tgatgtagat tttttaattt tagattgacg aggtttgcgt actaattggt taattgtagg
    13681 catgggataa attcctcctt ccttgtttag tagttccaca catccaggtg gttcattttt
    13741 tcggtaaaat aaaatggctg taagttcaac ctacaacgct gttttatttt cagacctctg
    13801 tttatagtag aggcaccttg aatatagtaa caccttgacg ttcggatgtc aaggtgttac
    13861 ttgaaattta gttaattagc taagtccatt caaacgttga tataaatctt tcgcgtagct
    13921 gtcggtcatg ccgcaaatga agtctgttac gagaagtaat cgcaagtaca gtttcattgt
    13981 ttcgctttcg ccttctgcgt ttttgcggta acagcctagg tagttgtcgg aaatcaaggt
    14041 tagtaggcgt ttatctttgg ctgtttggcg ttctggtgtt tcgctgtcgt agtaaatcac
    14101 agctgggatg aacgtttcga gcaatttgga gatgatttcg ttgccggcga tttcggattc
    14161 aacaatgcct ttatcttggt aaatgtacgt gaatgatagg ctttgtaaaa tttgtacgag
    14221 ttgttcggcg cttgaagcat cgataagtga gtcgttgaat gtgcctgcca tgatggcgtc
    14281 gtagttctcg taaaatactt cgagtgagcg attgattaat tggccgcgga cgttcgatgc
    14341 gagccattgt tgtacgatga aactttcttc ttgcccttcg tagcgctcgc tttttttctt
    14401 aagttcgttg tagcacgcgg cagttacttt attatgctct tctacttctt caaaaccttt
    14461 taagatttgc gtgatgttga cgataccttt tttcacgccg tcttctaggt cggcatttag
    14521 gtacgcgatg tcgtctgcca cttctagtaa ataagtgagc ggatgacggt tatcaagcgc
    14581 ttctgttgct gttgttattt cattaaaaag tgattcatcg gcataaaaat agcctagttt
    14641 tttgcttttg atttgttttt tatttacttt taaggaagaa actgggtatt tgatgaccgc
    14701 atttaaagtg gcaaatgtta ggtttaagcc gtattggtcg aaaagataat gcagtttgga
    14761 aactacacga agcacttgcg cgttaccttc aaagtaataa aagtcttctt tcatttgcgg
    14821 tgttaggatt tcagctaggt ttttattttt gtaagtgatg gttgctaaat tgtcgcggaa
    14881 ccactcacgg atactttctt caccaaagtg accgaacggc ggattgccca tatcatgtaa
    14941 aagtcctgca caagcaagga tttccggaat tttatccgca tgatcttttg taaaatcttt
    15001 gtctaagttt tcttcttgaa tcgtgtgtgt aaccatgttc cccattgatt ttgcgattgt
    15061 acttacttcc attgaatggg ttagtcgtgt acgcacaaaa tcactttttt ctagcgggaa
    15121 tacttgggtt ttatcttgta aacggcgaaa cgatgcactc ataacgatac gctgaaaatc
    15181 attttcgaaa gcgctacgta cgtcggtgtt tttcgaacga gtgacaccgg attcgcggcg
    15241 gcgtttatca tttaatagtt tatcccattt catttaaatc ccatcctttc ataggttgct
    15301 tatttttttc atttcggctt tagtgagcct atgtacggtc cattctgaca ttttctctgc
    15361 gccaattttt tcgtaaaaat ccatgcctga tttattttcg tttaggcacc accattcaaa
    15421 tctgccgcaa tcgcgtgata aagcgagttt ggataaatag ctgaaaaatt ttgttccaaa
    15481 gccttttccg cgcatttctg gaatgatgta aaggtcttct aggtataagc cttttttgcc
    15541 aagtaatgtg gaaaagttat ggaaaaagag tgcgaaacca actggctccc cttcgtattc
    15601 agcgataatt acttcggcag atttttcttg aaaaagggct ttgtgtaggc cggattcggt
    15661 tgctactaca tctttttcaa tgccttcatg aattgcaagt tcggtaataa aacgaagaat
    15721 taacgtcgtg tcttgttctg tcccgtttcg aaatactagt tgtgtcatat atctcttcct
    15781 tttcgttgtc gtattaattt aagtataagc tagtgctaga catgtatcaa ttaaaaaaaa
    15841 cttattccac acagatatga atatagaaaa gtttagatgt tttgtgtaag ggaaaatata
    15901 aaaaaactca agtaaggggg cttttctgtg ttacaaagaa gattttgggg tattttttgt
    15961 tttgccatat tcttgttttt atttccaact attggttctg ccgaaacatc tggtgactat
    16021 gaatatacaa taaatggaaa tgaagctacc attactgatt atacaggaca gtctactgat
    16081 attaccattc ctacaacact tggtcctaat aatgaatata ccgttactgc tatcgggaat
    16141 ggcgcattca aatccaagag attaactaat gtaacgattc ctaatacagt tataactatt
    16201 ggcgatggtg cttttaccat caattcactt gaacaac
//
LOCUS       DASDXX010000046        16236 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.046, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000046 DASDXX010000000
VERSION     DASDXX010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16236
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.046"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..167)
                     /locus_tag="U0280_001159"
     CDS             complement(<1..167)
                     /locus_tag="U0280_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2271113.1"
                     /translation="MKKLLLSISIIVGLSLLASCGVEKEYKPDIKVNEKNVSLKVWVD
                     LNQGDFYRKVV"
     gene            complement(305..1300)
                     /locus_tag="U0280_001160"
     CDS             complement(305..1300)
                     /locus_tag="U0280_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2271114.1"
                     /translation="MNKVTKIGDVAEKTGYSITTISRAINGNPNVSDKTKKKIFAAMK
                     ELNYYPNNIAQQFRGQGTKMIGVVISFITNPFFAYLVDAIERYLSHRGYQVVMLQTLE
                     NPAKELQFIEMLQKKQLDGLIMANLENDTEEIKSLVESGKIVLCNRYLGNENLTIINI
                     DETKAAYQATNYLIKCGYKRLAYCTGGIKNKNDYRFKGFMQAVTENGLSFDESLYFEK
                     LLTIKDGEELLVNILEEKSTLPDAIFSNGDTVAAGILYAAKKYGIAVPEELGIIGFDN
                     QPIAEVLNPALTTIEQPIKELGEYSAQVLLANLQGTSVPVAPDLETKLIIRETTK"
     gene            complement(1445..2623)
                     /locus_tag="U0280_001161"
     CDS             complement(1445..2623)
                     /locus_tag="U0280_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HEM2271115.1"
                     /translation="MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKGSKIRIMP
                     DTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERV
                     PSGSKTHDKPVDEFDLEGIVAPIHRGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSG
                     SRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYD
                     LSYVTGSDLNNYLNDMEIAQKFAARNRYVMAETILKAMKWDKIVVSAFDCVHNYIDID
                     NHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQ
                     ISLESYQAAMKDVWTTSVSKKTIDEAPKAYKSAKQLLVDVEDTMEIQEIIKPLYNFKA
                     "
     gene            complement(2971..3576)
                     /locus_tag="U0280_001162"
     CDS             complement(2971..3576)
                     /locus_tag="U0280_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2271116.1"
                     /translation="MTNNHYYTNDETIKHNRKTWQVMLKGFNMSFTSDNGVFSKNTVD
                     FGSRLLIESFELETKIGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKEN
                     AEINKITNTHIYESSVYDSVTANDYQAIISNPPIRAGKRIVHAILEGAYDHLQETGEL
                     WIVIQKKQGGPSAEKKMEEVFGNVETVAKDKGYFIFKSVKN"
     gene            complement(3719..4081)
                     /gene="rplL"
                     /locus_tag="U0280_001163"
     CDS             complement(3719..4081)
                     /gene="rplL"
                     /locus_tag="U0280_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEM2271117.1"
                     /translation="MALNIEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAAEQTEFTVELASAGDSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKEE
                     AEEIKAKLEEVGANVEVK"
     gene            complement(4160..4660)
                     /locus_tag="U0280_001164"
     CDS             complement(4160..4660)
                     /locus_tag="U0280_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEM2271118.1"
                     /translation="MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITELRKQ
                     LRDAGIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKD
                     HEALEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQ
                     KEGQEA"
     misc_feature    complement(4716..4859)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            complement(4908..5597)
                     /gene="rplA"
                     /locus_tag="U0280_001165"
     CDS             complement(4908..5597)
                     /gene="rplA"
                     /locus_tag="U0280_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEM2271119.1"
                     /translation="MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEV
                     AFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVE
                     KINQGWFEFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGK
                     VEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTF
                     GPGIKVDPASL"
     gene            complement(5637..6062)
                     /gene="rplK"
                     /locus_tag="U0280_001166"
     CDS             complement(5637..6062)
                     /gene="rplK"
                     /locus_tag="U0280_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEM2271120.1"
                     /translation="MAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
                     RTADQAGLIIPVVITVFEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTR
                     AQVQEIAETKMPDLNAANVESAMLMVEGTARSMGITIQD"
     gene            complement(6189..6659)
                     /locus_tag="U0280_001167"
     CDS             complement(6189..6659)
                     /locus_tag="U0280_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 63 family protein"
                     /protein_id="HEM2271121.1"
                     /translation="MDKAKQIYLEFKREADFLELDFPLFLGDGPGFGELCMDYSEQDG
                     YMLYGYERGKRNSEFKTTDFDEFKYEVFLHICWYMGMEFELRHRKEDMRHDDNILEAD
                     TRKIAFEKTLQLLKKVNPAWIDKAAQGYTAYLNLWRENKNVYFDKEAMEFKVNS"
     gene            complement(6714..7247)
                     /gene="nusG"
                     /locus_tag="U0280_001168"
     CDS             complement(6714..7247)
                     /gene="nusG"
                     /locus_tag="U0280_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEM2271122.1"
                     /translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEE
                     ETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL
                     PEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNM
                     FGRETPVEVDFNQIEKL"
     gene            complement(7377..7556)
                     /gene="secE"
                     /locus_tag="U0280_001169"
     CDS             complement(7377..7556)
                     /gene="secE"
                     /locus_tag="U0280_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEM2271123.1"
                     /translation="MSAIARFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFF
                     MLIDFGIEQIIKLIV"
     gene            complement(7576..7725)
                     /gene="rpmG"
                     /locus_tag="U0280_001170"
     CDS             complement(7576..7725)
                     /gene="rpmG"
                     /locus_tag="U0280_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM2271124.1"
                     /translation="MKKKTSLACSECGSRNYTVNVSGTQKETRLEVKKFCRHCNKHIL
                     HRETK"
     gene            complement(7829..8434)
                     /locus_tag="U0280_001171"
     CDS             complement(7829..8434)
                     /locus_tag="U0280_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sporulation sigma factor SigH"
                     /protein_id="HEM2271125.1"
                     /translation="MDNSVNQEELAMLELARSGDTEALEYFFSKYQSVIYWKSTQYFL
                     QGAERDDLIQEAMIGLFKAIRDYDKTKEASFRSFAEMCINRQLLSAVKRASRQKNIPL
                     NNSVSLDTPIAEDDMDWTLLDVISEKAAETPEDFLIKNEDLTHVARQLEQVTSEFEKE
                     VLKQYLEGKSYQEMALFFNKKEKAIDNALQRVKKKMMKQLE"
     gene            complement(8515..9027)
                     /locus_tag="U0280_001172"
     CDS             complement(8515..9027)
                     /locus_tag="U0280_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEM2271126.1"
                     /translation="MEQILLVDGYNVIGAWPELSFLKDRDLEAARDKLVEWMAEYQSY
                     TGYRVVVVFDAQFVRGVKRKSKKYQVEVVFTHEDETADEYIEQKAIEWKNVRTQIMVA
                     TSDYTEQWAIFGQGALRISSRELLFEIQEMSKQIGQKIKRIQEEMPKSNLNLDSDVIS
                     QLEKWRRGEE"
     gene            complement(9030..9785)
                     /gene="rlmB"
                     /locus_tag="U0280_001173"
     CDS             complement(9030..9785)
                     /gene="rlmB"
                     /locus_tag="U0280_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEM2271127.1"
                     /translation="MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVL
                     TLAKERKIQVQFVPKQKIEKVVGGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFI
                     ILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTN
                     MVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLV
                     HLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK"
     gene            complement(9785..10195)
                     /locus_tag="U0280_001174"
     CDS             complement(9785..10195)
                     /locus_tag="U0280_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HEM2271128.1"
                     /translation="MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHK
                     TATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSF
                     EAVLGYLYLAGELDRLQEWMEKALEIVEKGVETN"
     gene            complement(10199..11614)
                     /locus_tag="U0280_001175"
     CDS             complement(10199..11614)
                     /locus_tag="U0280_001175"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEM2271129.1"
                     /translation="MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARP
                     IIVFDTVRRYFTYRGYDVKFVSNFTDVDDKLIRAANELKLTVPEVADRFIGAYFDDVD
                     QLNVAKATVNPRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQEL
                     SELQHGARVEYNERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLG
                     DTIDIHAGGQDLVFPHHEDEIAQSEAATGKTFANYWMHNAFLNIDGEKMSKSLGNFIT
                     LHDVLKDNDPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDD
                     GEYVEEAHEDEWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSI
                     NVLREFLSMMRLFAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRD
                     ILKEKNIILEDTAQGTRFRRG"
     gene            complement(11621..12235)
                     /gene="cysE"
                     /locus_tag="U0280_001176"
     CDS             complement(11621..12235)
                     /gene="cysE"
                     /locus_tag="U0280_001176"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEM2271130.1"
                     /translation="MPTRLKEDIATIIKNDPATKSFFDAFLTNPGLHALWWHRVANFF
                     YRHKMVLFGKVLSQNARFWTNIEIHPGATIGRRLFIDHGAGIVIGETAEIGDDVTIFH
                     GVTLGGTGKDCGKRHPTVGDGALVSAGAKVLGPVEIGAGARIGAGAVVLKDVPPGATV
                     VGIPAKVVRLNGRTVGHAVPKMDELTLRIAELENIVEKLLKEKE"
     gene            complement(12635..14110)
                     /locus_tag="U0280_001177"
     CDS             complement(12635..14110)
                     /locus_tag="U0280_001177"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEM2271131.1"
                     /translation="MSETKRVRVRYAPSPTGFLHIGNARTALFNYLFARHNDGDFIIR
                     IEDTDAKRNIADGEESQMTNLKWLGMDWDEGVDVPGKYGPYRQSERQSIYEPLIQQLL
                     DEGLAYKCYCTEEELDAEREKQKANGEMPRYSGKCRHLTKEQQAEKEAQGFKPSIRFK
                     VPANETITFNDMVKDDVSFESNGIGDFVIAKKDGIPTYNFAVAVDDHLMEISHVLRGD
                     DHISNTPKQILIYNAFGWEPPIFGHMTLIVNESRRKLSKRDGSIIQFIEQYRDLGYLP
                     EALFNFIAMLGWSPEGEEEIFSKEEFIKMFDPKRLSKSPALFDNVKLTWVNNQYVKKL
                     PLNDVVELSLPHLQKAGVVSAELDQAELDWVHKLVSLYHEQMSYGAEIVPLSEMFFAD
                     AESITFDEEETAVLAEETVPTVISAFKKELEALEVLEAAEVKAAIKRVQKETGVKGKG
                     LFMPIRIVTTGEMHGPELPLAIEVLGREKVLNRLDTWLKNN"
     gene            complement(14129..14602)
                     /locus_tag="U0280_001178"
     CDS             complement(14129..14602)
                     /locus_tag="U0280_001178"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEM2271132.1"
                     /translation="MIRIGQGYDVHKLAYDRELIVGGIKIPYEKGLLGHSDADVLLHA
                     ITDAIIGAIGAGDIGHFFPDTDMAFKDADSAELLAEIWQKVEADGFRLGNLDATIIAE
                     KPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK"
     gene            complement(14595..15293)
                     /gene="ispD"
                     /locus_tag="U0280_001179"
     CDS             complement(14595..15293)
                     /gene="ispD"
                     /locus_tag="U0280_001179"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEM2271133.1"
                     /translation="MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADN
                     RCSKVIVVSQEEERKHVKELMSQLNVAESRIEIVKGGSERQYSVAAGLERCGTERVVL
                     VHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRVVKGVVQETVDRENLWQVQ
                     TPQAFELPILRKAHQLARKEQFLGTDEASLVERLPCPVAIVQGSYYNIKLTTPEDMPL
                     AKAILGELGGIAND"
     gene            complement(15313..>16236)
                     /locus_tag="U0280_001180"
     CDS             complement(15313..>16236)
                     /locus_tag="U0280_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN/TRAM domain-containing protein"
                     /protein_id="HEM2271134.1"
                     /translation="FYLITFWAVKYVEAALNWLEEKLAKIAIATLVYGGLGLFVGLVI
                     AFFASNALSQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPE
                     EEKTEEKSKKTYKILDTSVIIDGRIADILTTGFLDGTVVIPLFVLAELQHIADSSDTL
                     KRTRGRRGLDILNRIQKEEAIQVEMYEGDFEDTPEVDSKLVKLAKVMGGIVVTNDYNL
                     NKVCEFQNVPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDGTMIVVE
                     DGRKFINETIQVEVTSVLQTSAGRMIFAKPS"
BASE COUNT         4563 a         3757 c         2509 g         5407 t
ORIGIN      
        1 tctaccactt tcctataaaa atcaccctga tttaaatcca cccaaacttt taaagaaaca
       61 tttttctcgt ttacttttat atctggcttg tattcctttt ctacaccaca actagccaac
      121 aaacttaaac cgacaataat actgatggac aaaagtaact tcttcatact tgaacattct
      181 ccttatcttc acttaaaatg acaaccggtt gtcattttag cttaagcggt ttcatatatc
      241 gtaaaaataa tatcaattat cttataaaat gtcaaccgtt ttcataaaaa taataagaga
      301 gaatttactt ggtagtctct cttattatta gttttgtttc aaggtctggc gctaccggca
      361 cactcgttcc ttgtaaatta gccaatagaa cttgcgccga atattcacca agttctttaa
      421 ttggttgttc aatagttgtc aacgccggat tcagaacttc cgctataggt tgattatcaa
      481 aacctatgat tcctagctcc tctggcactg ctatcccgta tttttttgca gcatataata
      541 tcccagcagc aaccgtatca ccatttgaaa aaattgcgtc cggcagagta gatttctctt
      601 ctaaaatatt aactagaagc tcttcgccat ctttaatggt taataacttc tcaaaataca
      661 atgattcatc aaaagaaagt ccattttctg ttacagcttg catgaatcct ttaaaacggt
      721 aatcattttt atttttaata ccaccagtac agtaggcaag gcgtttataa ccgcacttta
      781 ttaaataatt cgttgcttga taagccgctt tcgtttcatc aatgttaata atcgtcaaat
      841 tttcatttcc cagataacga ttacaaagaa caattttgcc actttcaacg agtgatttaa
      901 tttcttctgt atcattttct aagttagcca taatcaatcc atctagctgt ttcttttgta
      961 acatctcgat aaattgtaat tcttttgcag gattttctaa agtttgcaac atgacaacct
     1021 gataccctct gtgagataga tagcgttcaa tcgcatcaac aaggtacgca aaaaaaggat
     1081 tggttataaa ggaaatcaca acaccaatca tcttagtccc ctgccctcga aattgttgag
     1141 caatattatt aggataataa ttcagttctt tcatcgcagc aaaaattttc ttttttgttt
     1201 tatctgaaac atttggatta ccattaattg ctcgagaaat agtagttata gaatagcccg
     1261 ttttctctgc tacatctcca attttcgtca ctttattcat atctatctcc ctaaaatttc
     1321 aaattcatct attttaattt attatatcag attacagaaa aagtgagaac ttatttcctt
     1381 ataacgctac tctaacaaca aaaagaagaa gcagcaaata gtaatatatg ctgcttcttt
     1441 tccatcatgc tttgaaattg tataacggtt taattatttc ttgaatctcc atcgtatctt
     1501 ctacatcaac aagcaattgt ttagctgatt tataggcttt tggagcttca tcaattgttt
     1561 ttttagaaac agaagtagtc caaacgtctt tcattgctgc ctgatagctt tctaaactga
     1621 tttgcgcttt tgctttagaa cgacttagca tccttcccgc cccgtgcggc gccgagtaat
     1681 tccaatctgc atttccttta cccgttgcaa gaatgctgcc atcgcgcata ttaagcggaa
     1741 cgataatttg ctctccaagc tgagcagatg tcgcaccttt tctaagcatg tggttatcaa
     1801 tatcaatgta attatgcaca caatcaaacg ctgaaacaac tattttatcc cacttcatcg
     1861 cttttaaaat agtttctgcc atgacgtaac gattacgcgc tgcaaatttt tgtgcaattt
     1921 ccatgtcatt taaataattg tttaaatcag agcccgtcac ataggataag tcataatcca
     1981 atttcacttg ctcacgctca ccgttcaagt tgttggccat ttctaaattg ccgcgttttt
     2041 tcgcagcagt tgcgtctaat ttcaattctt tacgcaatat gtctaatctt ttataagcta
     2101 cttcttggtg gtattctgca atttctttac caagcacccg acttccacta tggattacaa
     2161 ggtaaatacc atcagaacct tgattcactt caataaaatg gttcccgcca ccaagcgtcc
     2221 ctatacttct agctacccag ccgcgatgaa ttggcgcaac tataccttcc aaatcaaatt
     2281 catctacagg cttatcgtgt gttttgcttc cagatggcac ccgttcgcga ataactttat
     2341 ctagcttatc aaaatccatt tttaacttgc caggttttag ttttactacg tacagtccgc
     2401 aaccgatgtc cactccaacc aaattcggta caattttatc ttgaattgtc attgtcgttc
     2461 caatcacaca gcctttacca ccgtgcgtgt cgggcatgat ccgaatctta ctacccttcg
     2521 caaacggttg attacacagc gtaataattt gcccgatggt attgtcgtcc acattatctg
     2581 taaaaacttt cgcttcgtta tattttcctt ttaatgttag catttctatt cctcattttc
     2641 tgtttaatag agaaatgaaa gtctccactt ctcttcctag ctgttaaaat tctccagttc
     2701 tcctattgtc attcgactca cttctttcaa atttattttt aggtaaaaaa aaaagtccct
     2761 caatcaagaa agattgaagg acgtaacttt taacggacgc taccttgaaa agacaccggt
     2821 tggctatgca ggaacgttaa agaaatacct attatcttct gtcttgattg gttgtttttt
     2881 tctagtatat ttttcattct aagcatatcc ctcagtcctt tcttggtaaa atgtatttct
     2941 atattagcac gtttccgcac ttgatacaac ttaattttta acgcttttga aaataaaata
     3001 gcccttatct tttgccactg tttcaacgtt gccgaaaact tcttccattt tcttttcagc
     3061 agatgggccg ccttgtttct tttgaataac aatccaaagt tctccggttt cttgcaagtg
     3121 atcgtaagca ccttctaaaa tcgcatgaac tattcttttc cctgcacgaa ttggcggatt
     3181 actaataatc gcttggtaat cgttcgcagt tacgctatca taaaccgaac tttcatagat
     3241 atgcgtattc gtaattttat tgatttccgc attttctttc gcaagttcca gtgcgcgcaa
     3301 attaacgtcc accatttcaa tttggctatc agggaacgct ttcgctaccg ttaaccccat
     3361 cggaccatag ccacaaccaa catccaagat ttttcctatt ttcgtttcta actcaaaaga
     3421 ctcaatcaat aatctcgaac caaaatcgac cgtatttttg gaaaacacgc cattgtcact
     3481 tgtaaaactc atattaaaac cttttaacat cacttgccat gtttttcggt tgtgtttaat
     3541 tgtttcgtcg tttgtgtagt aatgattgtt agtcaagaac cgcaccttcc tttcgtatct
     3601 ctagctattt tagcataaaa tcttactcgg atgtagcatt tttggtaact catcttaaac
     3661 ttgattaatt gcaataaaaa agaccttaga taacaagtat ctaaggtctt taagttaatt
     3721 acttaacttc tacgttagcg ccaacttctt caagtttagc tttgatttct tcagcttctt
     3781 ctttagcaac gccttcttta agagctttag gagcgttatc aactaattct ttagcttctt
     3841 ttaagccaag accagtgatt tcacgaacca ctttgattac tttgatttta gaatctccag
     3901 cagaagctag ttctacagtg aattcagttt gctcagcagc agcgccacca gcagcagcta
     3961 cagctacagg tgctgcagca gttacgccaa attcttcttc gattgctttt actaaatcgt
     4021 taagttctaa tacagatgct tcttttacgg aagcaatgat ttcttcaatg tttaaagcca
     4081 ttttgaaatt cctccaataa tataattttt tcggatttaa ccgagatttg tttgtagggt
     4141 ttcccctggg tagaacagat tatgcttctt gtccttcttt ttggtcagca acagctttag
     4201 tagcgatagc aagaccgcga actggagctt gaagtacgtt gcaaagcata gatagcaatc
     4261 cttcgcgtga tggaagtgtt gcaagtgctt taatttcttc aagagaagca actttacctt
     4321 caataacacc ggctttgatt tctagtgctt catgatcttt agcgaaatcg ttaagaattt
     4381 tcgcaggcgc aactacgtct tcattactga atgcgattgc gttaggacca gttagtgctc
     4441 cttctaaacc ttcataaccg ttagcttcaa cagcacggcg agttagtgag tttttgtaaa
     4501 ctttaaactc aataccagca tcacgcaatt gtttacgtaa ttcagtgatt tcgccaacgt
     4561 ttaagccgcg gtaatcaaca attactgtag acgcactagc tgataatttt gttttaattt
     4621 cttctactgc actttgttta gcttcaagaa ctttactcat ttttccacct ccgtccaaca
     4681 attaaatcta attaaacaga cacaagttcc gtttgatcag caacaaaaaa cctctgacac
     4741 cgtagacatc agaggttttt gtaaaatgca cgcggacgca cacttcaaaa gaaatccctc
     4801 gggtggcaaa tttaagcgat aaacgcgcca actgtctacg gtaaggatat ttgattgttt
     4861 caactagcct atcttatcaa aagacaaggg gctggtcaag ttaaatttta taagctagct
     4921 gggtcgactt tgattccagg tccgaaagta gttgttacgg aaagattttt cacgtaagta
     4981 cctttcgcag cagcaggttt tgctttttgt agaacgtcat tcacagtacg gaagttttct
     5041 actagtttag cagcatcaaa agatacttta ccgattgcag cgtggacgtt accagcttta
     5101 tcaacacggt attctacttt accagcttta atttcgttaa ctgctttagt tacgtccata
     5161 gttactgtac cagttttagg gtttggcatt aaaccttttg gtccaaggac acggcctaat
     5221 ttaccaactt cacccatcat gtcaggtgta gcaacgataa cgtcaaattc aaaccaacct
     5281 tggttgattt tttcaacgaa ttcagattca ccaacgtaat cagctccagc agcctcagct
     5341 tctttagctt tttcaccttt tgcgaatact aatacgcgtt gagttttacc agtaccgttt
     5401 ggtaatacaa cagcaccgcg gatttgttgg tccgcttttt tagggtcaac gccaagacgg
     5461 aatgctactt caacagttgc atcgaattta gcgaagtcaa tttttttagc aagttcaact
     5521 gcttcttctg cagtgtaaac tttgtttgca tcaatttgtt ttaaagcatc ttgatacttt
     5581 ttgcctttct tagccatttc ttttcctcct taattgtcaa attgtgaaac acacgattag
     5641 tcttggatag tgatacccat agaacgtgca gtaccttcaa ccattagcat tgcagattca
     5701 acatttgcag cgttaaggtc tggcattttt gtttcagcaa tttcctgtac ttgagcgcga
     5761 gttacagatg caacttttgt tttgtttggt tcaccggatc ctttttccac tttagctgct
     5821 tttttaagta atacagctgc tggtggagtt ttagtgatga acgtaaacga acggtcttca
     5881 aatacagtga tcacaacagg aataataaga ccagcttgat cggctgtgcg agcattaaac
     5941 tctttacaga atcccatgat gtttacgcca gcttgaccta atgcaggtcc aactggaggt
     6001 gcaggatttg ctttacctgc tggaatttga agtttaactt ctttaatcac tttttttgcc
     6061 acgagacata cctccttaag tccgtgatgt ggttgactgg ggctgatatt tcccctccca
     6121 cgttaaaaca tacgtcaaaa acgtacttat atatgatacc attttaaatg tgtagttgca
     6181 agattatttt atgaatttac tttaaattcc attgcttctt tatcgaaata aacattttta
     6241 ttttcacgcc ataaattcaa atacgccgtg taaccttgtg ctgccttatc tatccatgcc
     6301 ggattcactt tttttagtag ttgtaatgtt ttttcaaaag cgatttttct ggtgtctgct
     6361 tctaaaatat tatcgtcgtg ccgcatgtct tctttccggt ggcgcagttc aaactccatt
     6421 cccatatacc aacaaatatg caagaaaacc tcatatttaa attcgtcaaa gtctgttgtt
     6481 ttaaattcac tgttacgttt gccacgttca taaccataaa gcatgtaacc atcttgttca
     6541 ctataatcca tacaaagctc gccaaaacct ggcccatcac ctaagaacaa tgggaaatcg
     6601 agttctaaaa aatcggcttc tcgtttaaat tccagataaa tctgctttgc tttgtccatt
     6661 ttgtcgcctc cctaataaaa caacctccac aaataatgta gaggttgcac attttaaagt
     6721 ttttcgattt ggttgaaatc cacttcgact ggcgtttcac gtccgaacat gttaaccatg
     6781 actttcgctt tacctttgtc gttgtccatt tcgtccactt taccggaaaa gtcagcgaat
     6841 ggtccttctt tgaccataac tgtttcacca atttcaaagt cagcttctgc acgtttttca
     6901 accatgccca tgcttttaag aatgcgatct gcttcttctg gaagtaatgg tgttggcttt
     6961 gatccagaac ctgctgaacc aacgaagcct gtaacacctg gagtattacg aactacatac
     7021 caagaatcat ctgtcataac gatttctact agtacataac cagggaaaac tttacgttta
     7081 attgtttttg ttttaccatt tttcacttct gtttcttctt cttccggtac gataacacgg
     7141 aagattttat ctgacatgcc cattgactct acacgttttt ctaagtttgc tttgacttta
     7201 ttttcataac cggagtaagt atgaactaca taccaatttt tttccattat ttagttggca
     7261 gcaatcctat tttgccgcca tcctcctttt agtataatcc aaaataaaaa acccgaaagt
     7321 tgtacgggtt ttgtctcaag taatagtata tcattatctt tgtaaaattc ctagcactac
     7381 acgataagtt taataatttg ttcgataccg aaatcaatta acataaagaa taaagcaaat
     7441 aaaactactg taataactac tgttactgtg taggttaaaa gttcttttct agttggccac
     7501 gtaactttgt gcatttcgga tgaaacattc cgaaagaatc ttgctattgc agacatacca
     7561 aaacctccat atcgtctatt ttgtttctcg atgtaatata tgtttattgc agtgtcggca
     7621 gaatttcttc acttctaaac gcgtttcttt ctgcgtcccg ctaacattga ctgtatagtt
     7681 tcttgaacca cactcagaac aagcgaggga tgttttcttc ttcataaatt atctcaactc
     7741 cgcaatcatt aaatatgcca tgccaaaaaa taggcacatt tcatccatat aaatataaca
     7801 tctggctctt agctagtcaa ttgttttttc attctagctg tttcatcatt ttctttttta
     7861 cacgttgtaa ggcattatcg attgctttct cttttttgtt gaagaaaagc gccatttctt
     7921 gatagctctt accttctaaa tattgtttta atacttcttt ttcaaattcg cttgtgactt
     7981 gttctagttg acgcgctaca tgcgttaaat cttcgttttt gattaaaaag tcttctgggg
     8041 tttcggctgc tttttcggaa atcacgtcta ataaagtcca gtccatatca tcctcagcta
     8101 ttggtgtatc taatgagaca gaattattaa gcggaatatt cttctgtcta gacgcccgct
     8161 tcaccgccga aagaagctgt ctgttaatac acatttctgc aaaagatcga aaagaagctt
     8221 cttttgtttt atcgtaatcc cgaattgctt tgaaaaggcc aatcatcgct tcttgaatta
     8281 aatcgtcccg ctccgcacct tgcagaaaat attgggttga tttccagtaa ataacagact
     8341 gatacttact gaaaaaatat tctaacgctt ctgtatcacc gcttctcgct agttcaagca
     8401 tcgcaagttc ttcttggttc actgaattat ccactaggct aatcggctcc tttacgacag
     8461 gatttcttct atggttgctc cattatacat agtcaaaaac ataccgtcaa tcccttactc
     8521 ctcgcctctt ctccactttt cgagctgtga aatgacatca gaatccagat taaggtttga
     8581 tttcggcatt tcttcctgaa ttcgcttgat tttctgtccg atttgtttac tcatttcttg
     8641 aatttcaaaa agtaactctc gggatgaaat tcgtagtgca ccttgtccaa aaatagccca
     8701 ctgttctgta tagtcagatg ttgctaccat aatttgcgtc cgcacgtttt tccattcaat
     8761 cgctttttgt tcgatgtact catctgccgt ttcatcctca tgcgtaaaaa cgacttcgac
     8821 ttgatatttc ttgcttttcc tcttcacgcc ccggacaaac tgtgcatcaa aaacgaccac
     8881 aacccgatat cctgtataac tttgatattc cgccatccat tcaacaagtt tatctcttgc
     8941 cgcttccaaa tcacgatctt tcaagaaact aagttctggc caagccccaa tcacattata
     9001 cccgtcaaca agcagaattt gttccatctt tatttctcca gagggaaacg tttccgataa
     9061 acttcataaa gtaacaaact agctgcaact gacgcattaa gggaagtaac ttttccacgc
     9121 attggtaaat gaacgaggaa atcacatttt tcacgtacta agcggctcat gccaaaccct
     9181 tcgctaccaa taacaatagc aagcggcata tccacatcca tcgtccggta atcgctacta
     9241 cctttcgcat ctgtcccaaa aatccaaagc ccgcgttttt gtagttcttc cattgtccgt
     9301 accatattcg tcacgcgaac cactggtaca tattccatcg ccccagtact tgctttggct
     9361 acagtttgcg tcaaacctac agagcgacgt ttcggaataa taatcccatg tgctccaaca
     9421 gaatccgctg tacgcataat tgatcctaag ttgtgtggat cttctaattc atccaaaata
     9481 atgaaaaatg gcatttcatc tttcgcttca gcagcagcga ataaatcgtc taactccgca
     9541 tattgataag ccgccacttg agctgcaaca ccttgatgcg ctccacctac tactttttca
     9601 atcttttgtt taggtacaaa ttgaacttga attttccgtt ctttcgctaa tgttaagact
     9661 tgttttaata cgcctttttg tgaaccttct tgtacgtata ttttatggat atctctatca
     9721 gatcgtaata cttcaagaac aggatttctc ccgccaatcc actcttgctc attttcttgt
     9781 tccattagtt ggtttccact cctttttcta ctatttcaag cgccttttcc atccattctt
     9841 gtaaacgatc caactcacca gctaagtaaa gataacctag cactgcttca aaagatgtgg
     9901 acatactgta agttccaggg tcagtatttt taggcactgt atacgacttg gcattacgcc
     9961 cacgctttgc aattctatct tcttcttccg tcaaaaaacc ttccgcaatc atagctttta
    10021 gcgccacagc ttgccctttt gcagaaacga attttgtcgc cgttttgtgt aactgattcg
    10081 gttttgtctt tccagcagca agtaaatatt cgcgaataaa tttttcataa actgcgtcac
    10141 ccatgtaagc aagcgcgagg ccattaagtt gtttatattc tttcacttct gccatgattt
    10201 acccccgtct aaaccgcgtg ccttgcgcag tgtcttccaa aataatattt ttttctttta
    10261 aaatgtctcg aatttcatca gcacgtgcaa aattacgttc gtttcgcgct tgcagacgtt
    10321 cttcaattaa cgcttctact tcgctatcat ccagcgaatc agtttgcgta ttttctaatt
    10381 tcaagcctaa tacttccgca aacaaacgca tcatgcttaa gaattcgcgc agaacattga
    10441 tagaaacagt ttctttagcc agataaatat tggcacgctt tgcaagttcg tgaaaagtag
    10501 taattgcatt tgccgtattg aaatcatcat ccatatcatc ttcaaaagct tgttttaatt
    10561 ccgttagctg ttctagccac tcgtcctcat gcgcttcttc cacatattca ccgtcatctg
    10621 tttgaatacg atgatcaata ttttggtatg caatcattaa ccgttccaaa ccatttttcg
    10681 catcttctaa aattgcatca ttcagtgtaa ttggcttccg gtaatgtaca gatagcatga
    10741 agaaacgaat cacatttgga tcattgtctt ttagcacatc atgcagcgta ataaaattcc
    10801 caagtgattt ggacattttt tccccatcaa tatttaaaaa ggcattatgc atccagtagt
    10861 tcgcgaacgt tttcccagtt gccgcttcgg attgagcaat ctcatcctca tggtgaggga
    10921 atactaaatc ttgcccaccc gcatgaatat caatcgtgtc accaagatat tttttcgcaa
    10981 gcgccgagca ttcaatatgc caacccgggc gcccattacc aaacggactt tcccagaaaa
    11041 tttcacccgg tttagccgct ttccaaaggg tgaaatcaag ttcatcttgc ttacgctcat
    11101 tatattcaac ccgagccccg tgctgcaatt ccgataattc ttggccagat agtttcccgt
    11161 aatctttgaa ttttttcgtc cggaaataca catcaccagc cgactcatac gcatagcctt
    11221 tttcaattag cgtactgatc aattgaataa tttcatccat attctccgtt acacgtggat
    11281 tcacagtcgc tttcgccaca ttcagttgat ctacatcatc aaagtaagcc ccaataaaac
    11341 gatccgccac ttcgggaacc gtcaacttta gctcatttgc cgcacgaatt aatttatcat
    11401 ccacatccgt aaaattagac acgaatttca catcataacc acgatacgta aaataacgtc
    11461 gaactgtatc gaaaacaata attggccgcg cattcccgat atgaatgtag ttatacacag
    11521 tcggtccgca aacgtacatt ttcacttcgc catctttgag tggtttaaaa ggctctttct
    11581 ctcgttttaa cgtattaaaa atttgtatcg acaatcagat ctactccttt tccttcaaaa
    11641 gtttttctac tatattttct aattccgcaa ttcgtaatgt cagttcatcc attttaggaa
    11701 ccgcatgtcc taccgtacga ccattcaaac gaacaacctt agcaggaatc ccaacaaccg
    11761 ttgcgcctgg aggtacatct tttaaaacga cagctcctgc tccaatacgc gctcctgctc
    11821 caatttccac cggcccaagt actttcgctc ctgccgaaac aagcgccccg tcaccgacag
    11881 ttggatggcg tttcccgcaa tcttttccag ttccacctag cgtaactccg tggaatatcg
    11941 ttacatcatc cccaatttct gctgtttcac caataacaat tcctgcacca tgatcaataa
    12001 aaagccttct accaatagtt gcgcctggat gaatctctat attagtccag aaacgagcgt
    12061 tctgcgataa tacttttcca aacaaaacca ttttatgacg ataaaaaaag ttcgccacac
    12121 gatgccacca aagtgcgtgc aatcccggat tcgttaaaaa agcatcaaaa aagcttttcg
    12181 tcgcagggtc attctttata attgttgcaa tatcttcttt taagcgagtt ggcattttgt
    12241 tgcctcctta ttcaagttcg tacatttttt cattggaacc tacgccaaca aaaaaagccc
    12301 ctccgataca gagacgcttt gcgcggttcc actctgactt gagtactgcc aattttagca
    12361 aatactccaa ctctaggggt gggggtaacg acccacattt cgtctgacga tactaaattt
    12421 cccatcagaa ttcagggagg catttcagga gtgttcagct aagtcgcttc cagccatggc
    12481 gactctctct ataaacttag aattccgtac ttcttcccat catcactttt tccgtatatt
    12541 tagttctatt ataacagcaa taaaattcct tgcaactgaa atatatcaaa ataaaaaagc
    12601 accccgcaaa tagccgagat gctttcattc aaaattaatt atttttcaac catgtatcca
    12661 aacgattaag cactttttca cgaccaagaa cttcgattgc aagtggcaat tcaggaccat
    12721 gcatttcacc cgttgtcaca atacgaattg gcataaataa acctttacct tttacgcccg
    12781 tttctttttg aacccgcttg attgccgctt ttacttccgc agcttctaga acttctagtg
    12841 cttctaattc ttttttgaat gctgaaataa cagttggaac tgtctcttcc gcaagcactg
    12901 ctgtctcttc ttcatcaaac gtaattgact ctgcatccgc aaagaacatt tctgaaagtg
    12961 gcacaatttc cgcaccatag ctcatttgct catgataaag tgacactaat ttgtgcaccc
    13021 aatcaagttc agcttgatct aactcagcag atacaacacc tgctttttgt aaatgcggta
    13081 gcgatagttc tactacatca tttagtggta attttttcac atattggtta ttcacccaag
    13141 tcaatttaac attatcaaat aatgctggtg atttagataa acgcttcgga tcaaacattt
    13201 taatgaattc ttctttagag aaaatttctt cttccccttc tggagaccaa ccaagcatag
    13261 caataaagtt aaacaaagct tctggtaaat atcctaaatc gcgatattgt tcgataaatt
    13321 gaataatcga accgtcacgt ttacttaatt tacgtctgct ctcattcaca ataagtgtca
    13381 tatgaccaaa aattggcggc tcccagccaa atgcattata aatcaaaatt tgcttaggcg
    13441 tattcgaaat atggtcatcc ccacgaagaa catgagagat ttccattaga tggtcatcca
    13501 ctgctacagc aaagttataa gtcggaattc catctttttt cgcaataaca aaatcgccta
    13561 ttccatttga ttcaaaagaa acatcgtctt tcaccatatc gttaaaagtg attgtttcat
    13621 ttgctggcac tttgaaacga atacttggtt taaaaccttg cgcttctttc tccgcttgtt
    13681 gttcttttgt taaatgacga catttcccgc tataacgagg catttcaccg tttgcttttt
    13741 gtttttcacg ttcagcatcc agctcttctt ccgtacaata acatttataa gccaaacctt
    13801 catccagaag ttgttgaatt aacggttcat aaatggattg acgttccgat tgacggtaag
    13861 gtccgtattt tccaggaaca tccacacctt catcccagtc catacctagc catttcaaat
    13921 ttgtcatctg actttcttca ccgtcagcta tgttacgttt cgcatccgtg tcttcaattc
    13981 gaatgataaa atctccatca ttatgtcttg caaataaata gttaaatagg gcagtacgcg
    14041 cattcccaat atgcaaaaat ccagttggac ttggtgcata acgtacacgt actcgttttg
    14101 tttcactcac aattattcac tccttcaatt atttttcaag taagacaacg gctagacttg
    14161 cgatgccttc ttcccgacca gtaaacccta atttctctgt cgtagtcgcc tttacattaa
    14221 cttgggctga atccgcatgt agcaactccg caattcgaag cttcatttgc tccacatatg
    14281 gcgccatttt tggcttttca gcaataatag tagcatctag atttccaaga cgaaaaccat
    14341 ccgcctctac cttctgccaa atttccgcaa gtagctcagc tgaatccgca tctttaaaag
    14401 ccatatctgt gtccggaaaa aaatgaccaa tatcaccagc accaattgcg cctatgatag
    14461 catcagtaat agcatgaaga agtacatccg catcactgtg acctagtaac cctttctcat
    14521 aaggaatttt aatcccgcca acaatcagtt ctcggtcata agcaagttta tgtacatcat
    14581 aaccttggcc aattctaatc atttgctatc cctccaagtt cccctaaaat cgccttagcg
    14641 agcggcatat cttcaggagt tgtcagctta atattataat agcttccttg gacaatagca
    14701 acaggacaag gaagtcgctc aaccagacta gcttcatccg ttcctaaaaa ctgttctttt
    14761 cgagcaagct gatgcgcttt tcgtaaaata ggcagttcaa aagcttgcgg cgtttgaact
    14821 tgccaaagat tttcacggtc aacagtttct tgaacgacac ctttcaccac tcgtttcacc
    14881 gtatctttta cttttactgc acaaatcgcg gctttacttt gctctacacc aattaataat
    14941 cgatcaataa tatctaacgt gataaacggt cttgcgccat catgtactaa gacaacccgc
    15001 tccgtcccac aacgttcaag acctgctgcc acactatatt ggcgttcact tccgcccttc
    15061 acaatctcaa ttcggctttc agcaacgtta agctgactca ttaattcttt cacatgcttt
    15121 ctttcctctt cttgactcac aacaatcact ttggaacaac gattatctgc taaaaaagga
    15181 cgcaaggcat gaatgaaaat tggttcacca actaactcta gccacatttt atttttctgg
    15241 gcattcatcc gttttccttg acctgccgct aaaaaaacca actcataatt catgcttatt
    15301 tcctcctttt aatcaggatg gtttagcaaa aatcattctt cctgctgatg tttgaagtac
    15361 actcgttact tccacttgga ttgtttcatt aataaattta cggccatctt ctacaacaat
    15421 catcgttcca tcatctaaat atgcaacgcc ttgattgtgt tctttaccat ctttcaccat
    15481 gagaacagtc attttctcac ctggcaaaac aactggtttt acagcattcg ccaaatcatt
    15541 aatatttaaa accggtacat tttggaattc acatactttg ttcaaattat aatcatttgt
    15601 aacaacaata ccgcccatta ctttagcaag tttcacaagt ttactatcca cttctggcgt
    15661 atcttcaaaa tcaccttcat acatttccac ttgaatagcc tcttcttttt ggattcgatt
    15721 taaaatatct aatccccggc gccctcttgt acgtttaagc gtatcggatg aatccgcaat
    15781 atgctgaagt tcggctaaca caaatagtgg aataaccacc gttccatcta aaaatccagt
    15841 agtcaaaatg tctgcaatac gaccatcaat aattacactc gtatccaaaa ttttatatgt
    15901 tttcttagat ttctcttctg ttttctcttc ttctggtgtt cttttctttg catttctgtt
    15961 attgacaaaa tttccaaatt cgttgcgacg actaattccg atacggaacc ctaaataacc
    16021 tagaactaat gttaaaataa ctggtactac tgaatttaaa agcggaatat ttgtttgact
    16081 taatgcattg ctcgcgaaaa acgcaatgac caaacctaca aataaaccaa gtcccccata
    16141 aacaagggtt gcaatagcaa ttttagctaa cttttcctct aaccaattaa gtgcggcttc
    16201 tacatatttc accgcccaga aagtaataag ataaaa
//
LOCUS       DASDXX010000047        15599 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.047, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000047 DASDXX010000000
VERSION     DASDXX010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15599
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.047"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..128)
                     /locus_tag="U0280_001181"
     CDS             complement(<1..128)
                     /locus_tag="U0280_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271135.1"
                     /translation="MKKHIVLIVVACITVIAVFMYIVQINNSELKYQNRAQIKIAS"
     gene            complement(207..1349)
                     /locus_tag="U0280_001182"
     CDS             complement(207..1349)
                     /locus_tag="U0280_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM2271136.1"
                     /translation="MKSKLELLFTKISHVMNVWQATFFAAVSWILALITIQTIYLWSI
                     SIRDDSLFLREVSQAIVQLFGTNKYTRIMQSFWMMSLKFLIIFLIACLFFAFFYRLMR
                     QRILKKQLRTINFALNDGKPVDTESFVPEIQELERNIENMRERQKKLMQQEEQAQQAR
                     NDLITNVSHDLRTPLTSILGYLSYIHEDRYRDEIELRYYTELVYGKARHLHKLIDDLF
                     SYTRLDSVDYQLKKDELDIIELLRQLVAEYDGRAAERNMQIVEHFDANKLIIGGDGNQ
                     IMRLFENLFSNALRYGEGNKQIDVSAKKEDNMAVVRVTNYGEEIPNVDLPYLFERFYK
                     VDKNRTTTGTGLGLAIAKSIVEKHGGIVTAESKKRQTSFIVKLPLI"
     gene            complement(1339..2034)
                     /locus_tag="U0280_001183"
     CDS             complement(1339..2034)
                     /locus_tag="U0280_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2271137.1"
                     /translation="MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQE
                     KQPTLVILDIMMPEMNGLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMV
                     KPFNPLELSVRVKAILRRMQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTT
                     SEFDILFLLASEPGRVFSSEYIFEKIWQEKALGASKTVMVHISNLRDKLREAMGGENV
                     IKTIWGVGYKIEI"
     gene            complement(2109..2984)
                     /locus_tag="U0280_001184"
     CDS             complement(2109..2984)
                     /locus_tag="U0280_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2271138.1"
                     /translation="MNHSNLTILSVCSNFVIVVLKLIVGFFTGSVAVISEGIHSSMDL
                     FASIITFFSIRISNQPADEDHPYGHGKAENIAGTIETLLIFVAGIWIIVESVNKLVNP
                     HEIRFPALGIMVMLFGAIVNIIVSRIIKKAADEANSVAMKSNALHLYTDVFTSLGIAL
                     SLFLVYITGWLWLDPVIAILTAFYIMYEAYKLLKESFPPLMDKRLSADEEEAIKQIIL
                     AHKARFIEFHDFRSRRAGAEEYIDFHLVVSSSMTIESAHSLCDEIEAEIMNFYAKAEV
                     LIHLEPEEERVLTRI"
     gene            complement(3176..3460)
                     /locus_tag="U0280_001185"
     CDS             complement(3176..3460)
                     /locus_tag="U0280_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2271139.1"
                     /translation="MRTAQKNGEDFVVFFFTPMCGSCQIASRLVDVVLESDEVHTEVV
                     KVDLNYVPDIAQNLEITSVPALVKFKNGQPADLSYQLHDATAIFEFLYSE"
     gene            complement(3545..3922)
                     /gene="gcvH"
                     /locus_tag="U0280_001186"
     CDS             complement(3545..3922)
                     /gene="gcvH"
                     /locus_tag="U0280_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEM2271140.1"
                     /translation="MSLPKDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELP
                     EVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILK
                     LEEVEEADVKALLSSDDYEKVLD"
     gene            complement(3963..4316)
                     /locus_tag="U0280_001187"
     CDS             complement(3963..4316)
                     /locus_tag="U0280_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEM2271141.1"
                     /translation="MINFYWYPKCSTCKKAKAWLENEHVDFNEVDIKTETPTAEEIQK
                     WHEVSGLPIRRFFNTSGIKYRELGLKDKLDTLSPEEAYKLLASDGMLIKRPLTTNGKE
                     VTLGFKEEEFEATWK"
     gene            complement(4473..5648)
                     /gene="rodA"
                     /locus_tag="U0280_001188"
     CDS             complement(4473..5648)
                     /gene="rodA"
                     /locus_tag="U0280_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEM2271142.1"
                     /translation="MNQQNKLAGRIDYGIVLSMMLLMIISLVSIYSAQLTNNQYDANF
                     VVKQAMWFVVSTFAIIVVMQLDYDRLTKWAYYFYGLGLFLLVFVLLFGKEVKGAKSWI
                     VIPFLGNIQPSEVVKVILIVVLAKVIWDHNRTYKVHRFSYDAWLLLKIGLFTLMPLIL
                     IMLQPDLGTALVFIAIMSGMILISGITWKIIVPLFGSIAAIGTALIWMVIYHQNWLTS
                     LGFKPYQFERITTWINPENDPQGGGYQVLRAMTAIGSGQISGNGAGYDAIAIPENHND
                     FIFTIVAGDYGFIGASILLAIYFLLIYQIIRVALDVGVPFYSYICTGVVMMLMFHVLE
                     NVGMNIGLLPITGIPLPFISYGGSALLGNMMAVGLVLGIRFNFKKSMFEVKEENHAS"
     gene            complement(5724..6893)
                     /gene="rodA"
                     /locus_tag="U0280_001189"
     CDS             complement(5724..6893)
                     /gene="rodA"
                     /locus_tag="U0280_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEM2271143.1"
                     /translation="MARNRKKAVRIDYSIIFLMMLLCIIGLVAIYVAGLVNDQYTNNF
                     LLQQSIWIVISTGVVVVIVLFFDYDKLQWAAYYLYGIGNLLLVLVLIVGDERKGSKSW
                     ISIGSLGSLQPSELMKSFLILALAKVIWDHNKKYKLHTVSLDMQLLLKIGIVSILPLG
                     LVALQPDLGTILVFIAIIIGMVFISGVTWKILLPVFSSIALIGGTLIYLVMYNQEFLQ
                     KLGFKPYQFKRITSWLRPEEDPLGDGMQLLRSMQAIGSGQLQGNGIGNQAIAIPENHN
                     DFIFSIIGGNFGFIGGCVLIMLYFLLIYQIIRVALDINIPFYSYICTGVCSMILFHVL
                     ENIGMTIGLLPITGIPLLFVSYGGSSLLGAFMALGLVLSARYNAPEVNLGKENRF"
     gene            complement(7035..7826)
                     /locus_tag="U0280_001190"
     CDS             complement(7035..7826)
                     /locus_tag="U0280_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271144.1"
                     /translation="MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKS
                     TMLRLMMRLLTPDSGEIFLNDKNITEIPSKDLAKKMTMLSQAPEGLVDVMVHDLVAYG
                     RLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
                     ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQ
                     LVKDGSPTEVFTTELLREVFHITADITEKDGKQHIHPLASTRFEY"
     gene            complement(7823..8833)
                     /locus_tag="U0280_001191"
     CDS             complement(7823..8833)
                     /locus_tag="U0280_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2271145.1"
                     /translation="MTTVKAHDPRRKRRRITFIVVIILLILAFFYGLTTGSVKITYSD
                     AWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGV
                     SAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAI
                     NAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRS
                     SNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLII
                     GNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRGRV
                     AS"
     gene            complement(8833..9804)
                     /locus_tag="U0280_001192"
     CDS             complement(8833..9804)
                     /locus_tag="U0280_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2271146.1"
                     /translation="MKKITILTLSITAALLLASCGNDTATDTNNETTKTENKSQAALT
                     ITDMAGRDVSFDKKPERIIALTNADMNIIYALGGTVVGRQTTDASGVPDGAKKATEVG
                     NTHDLNLEKIASLGADAIVASSEQNLKDVPAMEGVGPKVVLTGANSIDEIKKQTAVLG
                     ELLGKETKAKELEANIDQKVAEVKKKQQGKKVRSLLVLGAPGSNYAALPSSLSGNVLE
                     IAGGENVAKDFKGVENFPQYASMNVEKIVAADPEVIFLMIHGGDEKETEAAFKKEMKQ
                     NEAWNSTSAVKNDHIVVLPAELFGTNPGIKIDQALDYMTDEINKVDN"
     gene            9960..10124
                     /locus_tag="U0280_001193"
     CDS             9960..10124
                     /locus_tag="U0280_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271147.1"
                     /translation="MTDNLFPNLAHENCKETMPPVTTEQFKEAAILEKNRKLEEILNI
                     VDKKKPSIKK"
     gene            10257..11015
                     /locus_tag="U0280_001194"
     CDS             10257..11015
                     /locus_tag="U0280_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM2271148.1"
                     /translation="MAILELNFKSVCLAMQTSVTVILPETDALYHGSIPKYKTLYILH
                     GLSNNHTTYVRNTNIERYATEKGLAVVMPAADHSFYSNMVHGRDFFEFVSTELPHVMK
                     NWFPLSDKKEDTFIAGHSMGGYGAFKVALTFPEKFQAAASMSGVMDINYIIKEDCFEN
                     FSTRAITGEMASQTGTENDLFHLLETNLQNQVPLPALFQNCGTEDFLYEDNLRFRDFA
                     LEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLPL"
     gene            complement(11055..12458)
                     /locus_tag="U0280_001195"
     CDS             complement(11055..12458)
                     /locus_tag="U0280_001195"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HEM2271149.1"
                     /translation="MLYSEDDKRKQESYRIPLFGSEEESTSIPKYVLKKEPMEPRIAY
                     QLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCV
                     NILADLWNAPKDMSYLGTSTVGSSEACMLGGLAMKFRWRNHAEKRGLDIQAKRPNLII
                     SSGYQVCWEKFCVYWDVDMRVVPMDKEHLSIDVDKVFDLVDEYTIGIVGILGITYTGK
                     FDDIQLLDEKVEAYNEANEHQLVIHVDGASGAMFTPFVNPELPWDFRLKNVVSINTSG
                     HKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFL
                     RYGFEGYREIHEKTKKTALYLAKSVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLY
                     DLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAVDFADALHNLEHA
                     RVLYHDKERNDSYGFTH"
     gene            12585..12893
                     /locus_tag="U0280_001196"
     CDS             12585..12893
                     /locus_tag="U0280_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HEM2271150.1"
                     /translation="MFDLIFPLLLIILGVIYRVNPPKNKESRFSYRTKASLKNEISWQ
                     KAHQSLGIYWIVIGVSLLVLSLVLAFIPMHAFIRSSILLTTSIFAVLLSVILVEKKLQ
                     "
     gene            complement(12954..13808)
                     /locus_tag="U0280_001197"
     CDS             complement(12954..13808)
                     /locus_tag="U0280_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM2271151.1"
                     /translation="MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKI
                     EKTFVMETHELSEKLSELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHIN
                     FAVSRYNQGINLKNALLWEIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHI
                     VNARQDGQQMHMTVAMTQIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLR
                     KEIVDSGDDFLYEQVQIKYPEAFKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTE
                     RNTIIKEE"
     gene            14076..14486
                     /locus_tag="U0280_001198"
     CDS             14076..14486
                     /locus_tag="U0280_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2271152.1"
                     /translation="MATRSEQIFINLPVKDLQATVAFFTELGYEFNPQFTDENATQML
                     IGDNIFAMLLKEDFFQTFHKEGIADTTKAREVLITITQDSRQAVDTLVDHALKIGAKP
                     AGETQDYDFMYSRSFLDLDNHLWEIAYLDESALQ"
     gene            complement(14509..15021)
                     /locus_tag="U0280_001199"
     CDS             complement(14509..15021)
                     /locus_tag="U0280_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClbS/DfsB family four-helix bundle protein"
                     /protein_id="HEM2271153.1"
                     /translation="MVRPKNKVELLQQSTEKYQQLNDLINSIPKEKQQLTFPFEDRDK
                     NIRDVVIHLHEWHKMALDWYEVGMGGKKPLMPAEGYTWKTTPELNLVIWQKYQETDLA
                     QARELLDETHNKEMVLIAGHSEEELFTKKYYKWTNTTSLGAIFISSTSSHYDWAIKKI
                     RKFKKAAGIK"
     gene            15145..15486
                     /locus_tag="U0280_001200"
     CDS             15145..15486
                     /locus_tag="U0280_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HEM2271154.1"
                     /translation="MKKIVILIISLLLLVGIGFGVYYFKNANHIGADVSYVKITTDGE
                     KGKNVSFNYSYTMPAYDEAGKETEVTFSADKNLRKGAYLKLYIKEDKGVTSYEEVPEK
                     EVPSKAAEKLK"
     gene            complement(15518..>15599)
                     /locus_tag="U0280_001201"
     CDS             complement(15518..>15599)
                     /locus_tag="U0280_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2271155.1"
                     /translation="SELKRAYKTDFEWYHTSGEIDIYISI"
BASE COUNT         4861 a         3463 c         2504 g         4771 t
ORIGIN      
        1 tgagaggcta ttttaatttg ggccctattt tgatatttga gttcgctatt attaatttga
       61 actatgtaca taaataccgc aataaccgta atacaagcaa caacaattaa aacaatatgt
      121 tttttcattc tcctctcctc cgtgatttat attctacaga aagaacataa atcacgcgga
      181 aagaaacttt taagaattgt taaagattaa attagtggca gtttaacgat aaaactggtt
      241 tggcgttttt tgctttcggc agtaacaatt ccgccatgtt tttcaacgat agatttagca
      301 atcgcaaggc ctaatccggt tccagtcgtc gtccgatttt tatctacttt gtaaaagcgc
      361 tcgaacaagt aaggtaaatc gacattagga atttcttcac cataattcgt tacgcgcaca
      421 acagccatat tatcttcttt cttagcacta acatcaattt gtttgttgcc ttctccgtat
      481 ctaagggcat tcgaaaataa attctcaaat aagcgcatga tttggttgcc atcaccgcca
      541 ataattagtt tgttagcatc aaaatgttcg acaatctgca tatttcgttc tgcagctcgc
      601 ccgtcgtact ccgccactaa ttgccgtagc aactcaataa tgtctaactc atctttcttt
      661 agttggtaat ccacgctatc gagccttgta taagaaaaca aatcatcaat aagtttgtgc
      721 aaatgacgcg ctttcccgta cacaagctcg gtgtaataac gcagctcaat ttcatcgcga
      781 taacggtctt catgtatata acttaaatag cctaaaatgg atgtaagtgg tgttcgcaaa
      841 tcatgcgaaa cattcgtaat caaatcattt ctggcttgct gggcctgttc ttcctgctgc
      901 attaattttt tctgccgttc ccgcatattt tcgatgttac gttccagttc ttgaatttcc
      961 ggcacaaaac tttctgtgtc aactggcttc ccgtcgttaa gcgcaaaatt aatcgtacgc
     1021 agttgttttt tcaaaattct ttgacgcatc aaacgataga aaaaagcaaa gaatagacaa
     1081 gctattaaaa agataatcag aaattttagc gacatcatcc aaaaagattg catgattcgc
     1141 gtatatttat tcgttccaaa taattgaaca atagcttgtg acacttcccg taaaaacaaa
     1201 gaatcatccc gaatggaaat gctccataaa taaatagttt ggatggtaat caacgccaaa
     1261 atccaagaaa cagctgcaaa aaaagtcgcc tgccaaacat tcatcacatg gctaattttc
     1321 gtaaacaaca gttccagttt agatttcaat tttgtaccct actccccaaa tagtcttaat
     1381 cacattttct ccacccatag cctcgcgtaa cttatcacgc aaattactaa tatggaccat
     1441 tactgtctta ctcgctccaa gggccttttc ttgccaaatc ttctcaaaaa tatattctga
     1501 actaaaaacg cgccctggct cactcgctag taaaaataga atatcaaact cagaagtcgt
     1561 caaatgaagt tctttgccac taacagttac aacgtgaagg ccacggtcaa ctactatcgg
     1621 cccaatgatg actttatctt gactaacagg ctctgcctgg ctcatttgct gcattcttct
     1681 tagaatagct ttcacgcgta cagaaagctc taatggattg aatggcttga ccatataatc
     1741 gtccgcacct gttaaaagac ccatgatttt gtcgttgtct tcagccttgg cactaagcat
     1801 taggatggga gtcaaaatcc cattatctct cattaatcgg catacttcta agccgttcat
     1861 ttcaggcatc ataatatcta gtatcactaa agttggctgt ttttcttgaa ctaaacgcca
     1921 tacttccgca ccatcataag cttgataaat cgtatatcct tcattttgta aatataattt
     1981 tactaaatca acaatttctt tgtcatcatc agcaattaaa atagaagttg tcatactcat
     2041 tgtcctttcc agtcttattt ctacctattg taacacttta gcaacaaatc gaatagaaag
     2101 agctcggatt aaattctggt aagaacccgt tcttcttccg gctctaagtg gataaggact
     2161 tccgctttag cataaaaatt cataatctct gcctcaattt cgtcacatag cgaatgagca
     2221 ctttcaatcg tcatcgatga agatacaact aaatgaaaat caatatactc ttctgctcct
     2281 gcccgtctcg agcgaaaatc atgaaattca ataaatcttg ctttatgagc caaaataatt
     2341 tgcttgatag cctcttcttc atccgcagac aagcgtttgt ccattaatgg agggaaagac
     2401 tcttttaaca atttataagc ctcatacatg atataaaacg ccgttaaaat cgcgatgaca
     2461 ggatctaacc aaagccagcc ggttatgtat acaaggaaca aactaagcgc aatcccaagc
     2521 gatgtgaaca cgtctgtata taaatgtaat gcattggatt tcatcgctac tgaattagct
     2581 tcatcagccg cttttttgat gatacgagac acgataatat tcacgatagc gccaaaaagc
     2641 attaccataa taccaagcgc cggaaaacga atttcgtgag gatttacaag tttattaact
     2701 gattccacaa tgatccaaat ccccgctaca aaaataagta aagtttcaat ggttcccgca
     2761 atattctctg cttttccatg tccatatgga tggtcttcat cggccggttg attagaaatc
     2821 cgaatcgaga agaaagtgat gattgacgca aataagtcca tggacgagtg aatcccttcc
     2881 gatatcactg ccacagaacc tgtaaaaaag ccgacaatca atttaagtac aacaataaca
     2941 aaattactac acacagataa aatagtaaga ttagaatggt tcataaaaaa gcctccgata
     3001 ttttatgttt cactaaaaat ttctctttat aaaacactaa tttaacaact cgaattatct
     3061 taccacaagc agccaaattg tgtctatagc aacgttttta gttaaataca gttctatatc
     3121 gggagcgaaa cttttttgct ccagggcaaa atttaacaca gaaaaaatcc ctgtattact
     3181 cactatacag gaattcaaaa atggccgttg catcatgtaa ttggtagctt aaatcggccg
     3241 gttgaccgtt cttaaattta actagcgccg ggactgatgt aatttcaaga ttttgcgcaa
     3301 tatcaggcac ataatttaaa tctactttca caacttctgt atgaacctcg tccgattcta
     3361 aaaccacatc cacaaggcgg cttgctattt gacagctacc acacattgga gtaaaaaaga
     3421 aaacaacgaa gtcctcaccg tttttttgcg ccgtccgcaa acgttctttt tcccaaattt
     3481 ccaggaaaaa cgcctcctat caaaaaagac cagcttcggt tatcccaagc cggcctccta
     3541 aaaattaatc taatactttt tcgtaatcgt cacttgataa aagagccttt acatccgctt
     3601 cttctacttc ttcaagtttt aaaatccagc ctgtatcgta tggattgcta ttaattaatt
     3661 ctggttcatc ttctaatgtt tcgttaacag caactacttt accagttact ggtgcataaa
     3721 aatcagatac tgtttttaca gactcaatgc taccaataga gtcgccttta gctacagtgt
     3781 cgccaacctc tggcaattca acaaatacga tatcccctaa ttgatcttga gcaaagtccg
     3841 taatcccaat aacataacta ccctcgtctg ctttcaccca ttcatgttct tctgtgtaca
     3901 ataagtcttt tggtaaactc attttcaaaa ctcctccttt ttcgtgcaat tatctatatt
     3961 gactatttcc aagttgcttc aaattcttct tctttgaaac caagcgtcac ttctttgccg
     4021 ttcgtagtta gtgggcgttt gattaacata ccgtctgatg caagtaactt ataagcttct
     4081 tccggcgaaa gtgtatctaa tttatctttc agtccaagtt cgcggtattt aataccactt
     4141 gtgttaaaga aacggcggat tggaagcccg cttacttcat gccatttttg tatttcttcc
     4201 gcagttggcg tttctgtctt aatatctact tcattaaaat caacatgctc attttcaagc
     4261 catgcttttg ctttcttaca ggtgctacat tttggatacc aataaaaatt aatcattttg
     4321 cctctccctc cgattgcatt ctactactat catagtgcat tttttccgaa agtacaaatg
     4381 gcaacactta gaaaaaaaca gagcatttga aagcgtattc attcttggtt ttaaaaatac
     4441 aaaagccatt ttcgacttct gtattttctt ttttaagacg cgtgattttc ttctttcact
     4501 tcaaacatcg attttttaaa gttaaacctt atcccgagca ccaggccaac agccatcatg
     4561 ttcccgagca aggcgctacc accgtaacta ataaacggaa gcgggatacc tgtaattggc
     4621 agcaaaccaa tattcatacc aacattttcc agtacgtgga acattaacat cattacaacc
     4681 cccgtacaaa tgtaagagta aaacggtacg ccaacatcca gcgccacacg aataatttga
     4741 taaattaata agaaataaat tgctaataaa atactagctc caataaagcc ataatctccg
     4801 gctacaatcg taaaaataaa gtcattgtga ttttctggaa ttgcaatggc atcatatccc
     4861 gcaccgttcc cagaaatctg accagaacca attgccgtca tcgctcgcag cacttgataa
     4921 cccccgcctt gaggatcatt ctccggatta atccacgtcg taatccgctc aaattgatag
     4981 ggtttgaagc ctagactcgt cagccaattt tggtgataaa taaccatcca aataagcgcc
     5041 gtcccaattg ccgcaatcga accaaaaagt ggcacgataa ttttccatgt aattccggaa
     5101 ataagaatca ttcccgacat aatagcgata aatacaagcg cggtccctaa atcgggttgc
     5161 agcatgataa gaataagcgg cattaatgta aataagccaa tctttaaaag taaccaagca
     5221 tcataactaa agcggtggac cttataagtt cggttatgat cccaaatcac ttttgctaaa
     5281 acgacaatta agataacctt aacaacctca gatggctgaa tgttccctaa gaacgggata
     5341 acaatccagc tctttgctcc ttttacttct ttcccaaaaa gcaatacaaa tacgagtaaa
     5401 aatagaccta gtccgtaaaa gtagtaagcc catttcgtca gacgatcata atctagttgc
     5461 atcacgacaa taattgcaaa tgtcgacact acaaaccaca tggcttgttt gaccacaaag
     5521 tttgcatcat attgattatt tgttaattgc gcactataaa tggacaccaa actgattatc
     5581 atgagtaaca tcatagatag gacaatcccg taatcaatgc gtccagctag tttattttgt
     5641 tgattcatta tttaattact ccttactggt tggtttgtat aaacaaaacg aacgctttct
     5701 cccaaacagt ttaaaaaaga aaatcagaaa cgattttctt tccctaagtt aacttctgga
     5761 gcattgtatc tcgccgataa cacgagccca agtgccataa atgcaccaag aagtgagctt
     5821 cccccataac tgacaaaaag tagcggaata ccggtaattg gaagaagacc aattgtcatc
     5881 ccgatatttt ctaaaacatg gaacaaaatc atcgagcaaa cacccgtaca aatatacgaa
     5941 taaaaaggaa tattaatatc taatgccact cgaattattt ggtaaatcag taaaaagtat
     6001 aacataataa gtacacagcc accaatgaaa ccaaaattcc caccaataat ggagaaaata
     6061 aaatcattat ggttttccgg gatcgcaatg gcttgattac cgattccatt cccttgtaac
     6121 tgcccagaac caatcgcttg catcgaccga agtagctgca ttccgtcacc aagtggatcc
     6181 tcttccggcc ttaaccaaga agtaatccgt ttaaattggt aaggtttaaa tcctagtttt
     6241 tgtaagaact cttgattata cataactaag tagattaatg tcccaccaat gagcgcaatc
     6301 gaactaaaaa ctggtaataa aattttccaa gtaacaccac taataaatac cataccgata
     6361 ataatagcaa taaatactag aatcgtccca aggtctggtt gaagtgctac aagaccaagc
     6421 ggaagaatag aaacaatacc tatttttaac agtaactgca tatctaagct cacggtatgt
     6481 aatttatatt ttttattatg gtcccaaatg acttttgcaa gtgctaaaat caaaaaactt
     6541 ttcattaatt ccgatggttg caagctccca agcgatccga tactaatcca gctcttggat
     6601 ccttttcgct cgtcaccaac gataagtacg agtacaagca ataagtttcc tatcccataa
     6661 agataatacg ccgcccattg caacttatca tagtcgaaaa aaagtacaat aacaacaacg
     6721 accccagtag aaataacaat ccaaatagac tgttgcaata agaaattatt tgtatattgg
     6781 tcgttaacaa gccccgcgac ataaatcgct actagaccaa taatacacag caacatcatt
     6841 aaaaatataa tcgaataatc tattcgaact gccttttttc tatttctggc cattattttc
     6901 cgtccttttg tgtttgaatt taaatgtaaa aaagctgcta ttcttaaaaa gagcaacagc
     6961 cttcatctat tataataaag tttaccttgg ataggaagct ttttcaccaa attctaatct
     7021 tctttctgtt ttctttaata ttcaaaacga gtcgaagcaa gtggatgaat atgctgcttt
     7081 ccgtcttttt cggtaatatc cgccgtaata tgaaaaacct cgcgaagaag ctctgtcgtg
     7141 aaaacttctg taggcgagcc atctttgact aattgtccat tttcgcatac aaaaacatgg
     7201 tcactgtaaa ttgctgcctg atttaaatca tgtaaaacga gcacgatagt taaattatat
     7261 tctttattta aatgcacgag taaatctaaa agctccagtt gatgcgcaat atctaaataa
     7321 gtcgtgggct catctagtaa taaaatcggt gttttttgtg caagagccat ggcgagccaa
     7381 gcgcgttgtc gttctccgcc tgataacgaa tgtagcgggc gataagccaa ttcttctaag
     7441 ttgcacactt taatagccca gtgaatgacc gcctcgtcct cctcttgcaa agtggagagc
     7501 cagcttcggt gcggcaaacg gccatacgcc actaaatcat gcaccatcac atctaccaaa
     7561 ccttctggag cttgtgataa catcgtcatt tttttcgcta aatctttaga tgggatttca
     7621 gtaatgtttt tatcatttaa gaaaatctcc ccgctatccg gtgtcaaaag gcgcatcatc
     7681 aaacgcagca tagtcgattt tcccgagccg tttggaccga taagcgtagt gattttccct
     7741 tctggaatac tcgcgctcac gtttttcatt tcgaaatctc ttttacgtga gaaagaaaca
     7801 ttttttagtt ctaatgctga tttcatgaag caaccctccc tctttgaagt aagaataaga
     7861 agaatggtgc gcctatcatt gcaagcagga ttccaacagg aagctcgatg gatccgaacc
     7921 aacttctagc tgctgtatca gcaaagccaa ctaataaagc cccgccgagt gcggatagtg
     7981 gcagtaagta tttatagtca tttccaatga tcaaacggaa aatatgtggc acaacaagtc
     8041 caacaaagcc aataagtcca gctacactaa ccgcaacccc actgagaaag gccgccaaca
     8101 ttataataaa aaagcgatgc cgttccacag aaaagccaag taatttcgcc gcatcatccc
     8161 caagtagcaa tacattagaa gaacgaatcg caaaaccact taaaacaaac ccgaccagca
     8221 tatacggcca aatcatatcc aaatgatacc aactttttcc ggaaagtgtc cctgtcatcc
     8281 aagaaataac actttgaacc cggttgctat aaagcaccat tacgccagac gtcatcgcac
     8341 caataaacgc attaatcgcc accccagaca aaattacacg taaaggagaa acaccgcgat
     8401 cccatgcaag caaataaatc aaaatagctg ttccaaacgc ccctaaaaac gcaccaatcg
     8461 gcacaaagga agctaacgca ggaaatgcta atgtcattaa aatggccacg aagccaccac
     8521 cggctgaaac cccaattacg cctgggtcag ctaatggatt ccgcatcacg ccttgcagca
     8581 agcatccagc aatcgccagc gctgctccta ctaagaaagc aattaataac cgcggcaagc
     8641 gcaagttcca aatcaattgg ttcgctaggt cacttccccc gccagttagc gtctgccaag
     8701 catcactata tgtaattttc acggaccccg ttgtcagtcc gtagaaaaaa gctaaaataa
     8761 gtaaaatgat tactacaata aaagttatcc gtctacgttt tcgccgcgga tcatgcgcct
     8821 tcacagttgt cattagttat ccaccttatt tatctcatct gtcatataat ccaatgcttg
     8881 atcaatctta attccaggat ttgttccgaa tagctctgca ggaagtacga caatatgatc
     8941 atttttaacg gcgcttgttg aattccaagc ttcattttgt ttcatttctt tcttgaatgc
     9001 tgcttctgtt tctttttcgt ccccaccgtg aatcattaag aaaatcactt ccgggtcagc
     9061 agcaacaatc ttttctacgt tcatcgaagc gtattgtggg aagttttcaa cgcctttaaa
     9121 atctttcgct acattttctc caccagcaat ttctaaaaca tttccactta atgaggatgg
     9181 tagcgccgcg taattactgc caggagcccc tagaacaagt aatgagcgca cttttttacc
     9241 ttgttgcttc ttcttcactt ccgccacttt ttggtcaata ttcgcttcta actctttggc
     9301 ttttgtctct ttgcctaaaa gctcgccaag cacggctgtt tgttttttaa tttcgtcaat
     9361 tgagttggct ccggtcaaca cgactttcgg tccgacgcct tccatcgcag gaacatcttt
     9421 taagttttgt tctgaacttg cgacaatagc atcagcacca agagaggcaa ttttttctaa
     9481 attcaaatca tgggtattgc ccacttctgt agctttcttc gcaccatctg gaacaccact
     9541 cgcgtctgtt gtttggcgac ctaccaccgt tccaccaagt gcatagataa tattcatatc
     9601 cgcattcgtc agtgcgataa tccgttctgg ttttttatca aaagaaacat cacgcccagc
     9661 catatctgtt atcgttagag ccgcttgcga tttattttcc gttttagttg tttcattatt
     9721 cgtatcagtt gccgtatcat ttccacacga tgcaaggagt agtgcggctg ttatacttaa
     9781 cgtcaatata gttattttct tcataattcc cctccacaac actgtccttt tcattttact
     9841 aaattataac acgatattca aaaagacgaa cccctaattg agaattattt tcatttatgt
     9901 tcaaatagtc gatatttctc agccgatact ttataattaa cttaaggagg cgatgaaaaa
     9961 tgaccgataa tctttttcct aatctagcgc atgaaaattg caaagaaacg atgcccccag
    10021 tcacaacaga acaattcaaa gaagcagcca ttctcgaaaa gaatcgcaaa ctcgaagaaa
    10081 tcttaaacat cgttgataaa aagaaaccaa gtattaaaaa ataacgagga cctgttcgcg
    10141 caggttcttt attttacatt taattccgag ttaactcata agataagtta tatttatttt
    10201 atttcgctca aaaatcatgt atactagaaa aaaagacacg tcaggaggcc cctacattgg
    10261 ctattttaga acttaatttc aaatcagttt gtttagctat gcaaacaagt gtaacggtga
    10321 ttttgcccga aacagatgca ctttatcatg gctcaattcc gaaatataaa acattatata
    10381 ttcttcacgg tttgtcgaat aaccacacta cttatgtacg caatacaaat atcgaacgct
    10441 atgccactga aaaagggctc gctgttgtca tgcccgcagc agatcatagc ttttattcta
    10501 acatggttca tggtcgcgac ttttttgagt ttgttagtac ggaactgccg cacgttatga
    10561 aaaactggtt cccactttca gataaaaaag aagatacttt tatagctggt cattccatgg
    10621 gaggttacgg tgcgttcaag gttgcactta cttttccaga aaaattccaa gccgcggcca
    10681 gtatgtccgg cgtcatggat attaattata tcattaaaga agactgcttc gaaaatttca
    10741 gcacgcgtgc catcacgggt gaaatggcta gccaaactgg tacggaaaat gatttatttc
    10801 atttattaga aactaatctc caaaaccaag tgccattacc agcccttttc caaaattgtg
    10861 gcacggaaga ttttctatat gaagataatc ttcgtttccg agattttgcg cttgagaaaa
    10921 atgctccgct agagtatcgc gaaggccccg gtgaccatga ttgggatttt tgggataaga
    10981 gtatcaaaga aattatcgac tggcttccac tttaataaaa agaagactcg gactcaccat
    11041 ccaagtcttc ttttttagtg cgtaaatccg tatgagtcgt tgcgttcttt gtcatgatac
    11101 agcactctag catgttccag attatgaagc gcgtctgcaa aatcaaccgc aaactcttca
    11161 gccacgttat agcctaagtc cgcccgacaa acaaaccgtt gaataatcgt atcacttaaa
    11221 tcggccggaa gtggataggc tggaacttgc catcctttca ttaaaagctg atcagccaag
    11281 tcatatagcg tccactctac atccagtcct tctttcattt tgtaacaaac aatcggtaaa
    11341 ttagcgccat cattaataat ttcaaagtag ccactttttt ctacactttt tgccaagtaa
    11401 agggctgttt tctttgtttt ttcatgaatt tctcggtaac cttcaaaacc atatcgtaaa
    11461 aaattataat attgaccaat aatttgactg gcactacgag agaagttaat cgccatcgtc
    11521 ggcatcgaac cacctaagta gctgacttca aatataagct cttttggtaa atattctttg
    11581 tctttccata aaatccaacc aacgccagga taaaccaatc cgtatttatg accggaagta
    11641 tttatagaaa caacattttt aaggcggaaa tcccaaggta attccggatt tacaaatggt
    11701 gtaaacatcg cgccacttgc tccgtcaaca tgaatgacta attgatgctc gttcgcttca
    11761 ttatatgctt ctactttttc atctaataat tgaatatcat caaatttacc agtataagta
    11821 atgcctaaaa tcccgacaat cccaattgtg tattcatcaa ccaaatcaaa cactttatct
    11881 acatcgatac tgagatgctc tttatccatt ggcacaacac gcatatctac atcccagtac
    11941 acacagaatt tttcccaaca tacttggtag cctgatgaaa taattaagtt cggtcgtttc
    12001 gcttgaatat ctagacctcg tttttccgca tggttacgcc agcgaaattt cattgccaaa
    12061 ccgccaagca tacacgcttc cgaagagcct actgtcgaag tccccaagta agacatatct
    12121 tttggagcat tccacaaatc ggctaaaata ttgacgcagc gattttccag ttcagctgtt
    12181 tgcggatatt cggatttatc aattgcattt ttctcgagcg tttctgccat cagtatttct
    12241 gcctcttttt ccatgtatgt ctgacaaaaa gttgctaagt tttgccgcgc atttccctca
    12301 tccatcaact ggtctttcac tagttggtac gcaatacgtg gttccatcgg ttcctttttt
    12361 aatacatatt tcgggatact cgtgctttct tcctcagatc caaagagtgg gattcgataa
    12421 ctttcctgtt ttcgcttgtc gtcttcacta taaagcatct tttttcctcc tttaaaataa
    12481 ctgatcacct tctctcacca atacccatta aaccttagag acaaaccgtt caatttttca
    12541 caataatttg ttatactacg atggtactta taaggaggtt cgttatgttt gatttaatct
    12601 ttccactttt acttattatt ctcggtgtca tctaccgggt gaatccacct aaaaataaag
    12661 aaagtcgctt tagttatcga acgaaagcat ctttaaaaaa tgaaatctct tggcaaaaag
    12721 cgcatcaatc tctaggaatc tactggatag ttatcggggt ttctcttcta gttttgtcac
    12781 ttgtacttgc ttttatcccg atgcatgcct ttattcgtag ctcgatttta ttaacaacaa
    12841 gtatttttgc cgtattactt tctgtcattt tagtagaaaa aaaactacaa taaaaaagca
    12901 ccgcgctaag cagtactttt ctgtaatcca ttacatataa gtccaaaaaa attttactct
    12961 tcttttataa ttgtatttcg ttcggtgaca cgataaatat gaatagtaag gtagacacgc
    13021 tcgtctctcg ttagttctgt atgatgcgta tttattaaat aggcatcaat ttttttcgta
    13081 catttaaaag cttctggata tttaatttgc acttgttcat ataaaaagtc atcgccggaa
    13141 tcgacaatct cttttcgaag caaacgttgc gcgaaatact gtaaatgtgt aataaaacgc
    13201 gtgtaattca gtgaagtttc atccaatacc ataccataat gatacgtaac aatacttaaa
    13261 atatcttgaa caatttgagt catcgctaca gtcatgtgca tctgttgccc atcttgtcta
    13321 gcatttacaa tgtgaagcgc gataaaacca gcttcatcct catctaaacg aattccaact
    13381 tcttgctcga taaaatctag tgctttcatt cccaccaaat actctgcgtg ataaaatcgt
    13441 tttatttccc ataataatgc gtttttcaaa ttaatacctt gattataccg tgacacagcg
    13501 aagttaatat gatcagttag ggtcaaataa atattgtcac ttaaatctgt ttccaaagtt
    13561 tcttgcgcat actgaaccac gtcatccgca acacgtaaat gtttcagtgg aatctcacta
    13621 agtaactcag agagcttttc tgaaagttca tgtgtttcca ttacgaatgt tttttcaatc
    13681 ttggatacct ccacctcatc tccaagtttc ttttgaaaag caagaccacg acccatcact
    13741 acagactcct tgccactttt accctcggcg attacaacat tgttattcag tatttttttg
    13801 ataatcatgc attttcacct ctttcaaaag aaaaaaaccc aaactaattc caatgctatt
    13861 aatatcaaaa tagcacttga attaattcag gttttgcccg ccttagcagt aacaatccta
    13921 tgcttttctc taacattata gtacaaaaag aaaccgatta caagtggttt tttgatattc
    13981 aattttggtt tactttatat cttccctact ttaccacaac ttattcattg acatgtagtt
    14041 ttctgcatgc tatttttggc tggaggtgat aaattatggc aacacgctcg gaacaaattt
    14101 ttattaattt gcctgtaaaa gatttacaag caaccgtcgc ttttttcaca gaacttggct
    14161 acgaattcaa tccgcaattc acagacgaaa atgctaccca aatgctcatc ggagacaata
    14221 ttttcgccat gctcttgaaa gaagatttct tccagacttt ccataaagaa ggcatcgctg
    14281 acacaacaaa agcacgcgaa gtcctcatca ccatcaccca agatagccgc caagcagtcg
    14341 atacgctggt cgatcatgca ctaaaaatcg gcgcaaaacc agcaggcgaa acacaagact
    14401 acgactttat gtatagcaga agttttcttg acttagacaa ccatctatgg gaaatcgctt
    14461 atttagacga atccgcttta caataattac aaaaaaagcc gttggaattc atttgattcc
    14521 agcggctttc ttgaatttcc gtattttttt aatcgcccag tcgtaatgac ttgatgtgct
    14581 tgaaataaat atggcgccta gtgaagttgt attggtccat ttataatatt tttttgtaaa
    14641 tagttcttcc tccgaatgcc ctgcaattaa aaccatttct ttgttatggg tttcatccag
    14701 taattccctt gcttgcgcta aatcagtctc ttggtatttc tgccaaatga ccaaatttag
    14761 ctctggtgtc gttttccacg tataaccttc tgctggcatc aatggtttct ttccacccat
    14821 tccaacttca taccaatcca gcgccatctt atgccattcg tgcaaatgta ttacgacatc
    14881 ccgaatattt ttatcccggt cttcaaatgg aaacgtgagc tgttgctttt cttttggaat
    14941 agagttgatt aaatcgttca attgttggta cttttccgtg ctttgttgaa gtaattctac
    15001 tttgttcttt ggtcttacca tagaaacatt acccctttct aacaattatg taagtttaaa
    15061 ttatcatttt gtcgctttac gcgagggatt tacatgtcat ttccctatac aataaaggta
    15121 acacttttgc aaaggatgat ggatatgaaa aaaatcgtta tacttattat aagcttacta
    15181 ttactcgttg ggattggatt cggtgtatat tactttaaaa atgccaatca tataggtgca
    15241 gacgtatcat atgttaaaat cacaacggac ggcgaaaaag gcaaaaacgt aagcttcaac
    15301 tattcctata caatgccagc atatgatgaa gccgggaaag aaacagaagt tactttttct
    15361 gcagacaaaa atttacgcaa aggtgcttat ttaaaattgt atattaaaga agacaaaggc
    15421 gtaacttcct atgaagaagt cccagaaaaa gaagttccct ctaaagcagc agaaaaactt
    15481 aaataatcac ccaatctcct ccttgcgagg ggatttttca tattgaaata tatatatcta
    15541 tctcgccact cgtatgatac cattcaaaat ctgttttgta cgctcgtttt aattcacta
//
LOCUS       DASDXX010000048        15503 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.048, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000048 DASDXX010000000
VERSION     DASDXX010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15503
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.048"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..616)
                     /locus_tag="U0280_001202"
     CDS             complement(<1..616)
                     /locus_tag="U0280_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2271156.1"
                     /translation="MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAEC
                     FVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTELKPSPFVVEQSDYREEYLKNIIE
                     SVRVLEPSKIKKITKKLVSKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYR
                     QAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISIT"
     gene            complement(633..1742)
                     /gene="aguA"
                     /locus_tag="U0280_001203"
     CDS             complement(633..1742)
                     /gene="aguA"
                     /locus_tag="U0280_001203"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HEM2271157.1"
                     /translation="MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQ
                     QNYKEVAVAISNFEPVTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVN
                     DKGEMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCDIERLDYYSQKDFILEGCSIH
                     VDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYFHVQKVIWLKHGFYLDETNGHVD
                     NIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANQTDAKGRTFIIHKLHCPDPVLI
                     TQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPKDKDAQELLEQLY
                     PDRKIVGIKAREILLGGGNIHCITQHLPDKSTIRE"
     gene            complement(1843..2784)
                     /gene="arcC"
                     /locus_tag="U0280_001204"
     CDS             complement(1843..2784)
                     /gene="arcC"
                     /locus_tag="U0280_001204"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEM2271158.1"
                     /translation="MNQKIVVALGGNAILSSDASAEAQQSALEKTAEYLVQFIENGDD
                     LIISHGNGPQVGNLMLQQHAGASEKNPAMPLDTCVAMTQGSIGYWMQNALDKAFLKHG
                     LDKVAVSLITQVVVDKDDPAFKKPTKPIGPFLTKEEAEKEMAETGAIFLEDAGRGYRK
                     VVPSPRPLSIKEHQIIKQLVDSGVVTISAGGGGVSVVENGLDLSGVETVIDKDFASEK
                     LAELISADLLVILTGVENVYINYNQPNQKKLERVTVSELEKYIDEKQFAAGSMLPKIE
                     AATAFVKERPNAKAIITSLENIGAMLEQGAGTVIIAG"
     gene            complement(2797..3891)
                     /gene="aguA"
                     /locus_tag="U0280_001205"
     CDS             complement(2797..3891)
                     /gene="aguA"
                     /locus_tag="U0280_001205"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HEM2271159.1"
                     /translation="MRTIDSSSKKDGFRMPGEFEKHAGCYIIWPERPDNWRLGAKPAQ
                     KAFVDVATAISRFEPVTVVASSSQYVNARYMLPDEIRVVEMDNDDAWVRDSGPTFVVN
                     DSGDVRGVDWSFNSWGGLVDGLYFPWDKDDQVAQKICELERKDRYRLADFVLEGGSIH
                     VDGEGTLVTTEECLLSEGRNPQLSKQQIEMVLKEYLNLEKIIWLKRGIYLDETNGHVD
                     NIFNYVRPGVVALAWTDDETDPQYEISKECFDILSNETDAKGRKLEVHKINVPKPILI
                     TDEESKGVDAVEGTLPREEGDRLAASYINYYTANGGVVFPLFGDPNDELAREKLRQLY
                     PNCEVVGVKAREILLGGGNIHCITQQVPRG"
     gene            complement(3878..5263)
                     /locus_tag="U0280_001206"
     CDS             complement(3878..5263)
                     /locus_tag="U0280_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEM2271160.1"
                     /translation="MEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALL
                     ILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVL
                     FVEVITQIFPVSFGTPVSIFIQLIFVWIVVIISCYPVSDSKWILNIAAFCKVAIMLCL
                     GVLGIYFAMTKGLANDFSGKALLPTFDLESLSFISVILFNFLGFEVVTTLASDMENPK
                     KQIPQAIIYGGVLIAFFYLLAAFGMGAAIPTSELSTSGGLIDSFIMLIGGVNPFVIII
                     GIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNGMPTGTSILNGIVAS
                     VLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKVDPDRERPFKVPGGKI
                     LLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTVVAVIVGEICIWLAGKR
                     KDKGEIGNEND"
     gene            complement(5336..6361)
                     /locus_tag="U0280_001207"
     CDS             complement(5336..6361)
                     /locus_tag="U0280_001207"
                     /EC_number="2.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine carbamoyltransferase"
                     /protein_id="HEM2271161.1"
                     /translation="MNKKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQLLKHK
                     TLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDIL
                     MARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVF
                     VGDATQVCASTMFMATKLGMDFVQFGPKGFQLREEHLKIAEENCKVSGGSYLITEDVD
                     IALKDADFIYTDVWYGLYEAELSEEERMKTFYPKYQVNKELISKAAPHVKFMHCLPAT
                     RGEEVTDEVLDAPYSVVIDEAENRLTAMRALLVYFMNPYVREAGFAVAEKYDAELELL
                     LRNGAGL"
     gene            complement(6596..7681)
                     /locus_tag="U0280_001208"
     CDS             complement(6596..7681)
                     /locus_tag="U0280_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2271162.1"
                     /translation="MKPTMMTYINEEEEMCRVILADFQTNAEKLESLVKNGAKEWLIL
                     ATGSSLNAAQSAKYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQSTSTI
                     SALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLML
                     TGLHFAYKTVQIDETRFNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAI
                     GYGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTER
                     LVLLRDYESKYTPFTYTVKFGKGEDDRTLVIPTDLDEYQAPFLMILPFQILAHHIAEL
                     KGNKLTERIYTDFGVAMKSKTKPGDYA"
     gene            complement(7683..9041)
                     /locus_tag="U0280_001209"
     CDS             complement(7683..9041)
                     /locus_tag="U0280_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2271163.1"
                     /translation="MSSERSLSSRFIEGLSIFAQKISSQKHIMAIRDGFAAMIPITII
                     AAFFLLVNNVLLQPENGLLKFIPNVENYLGVGIQVYNATLGIMAILAAFLIGNFLAKS
                     YGMEGRTEGVIAVAAYVVLIPASSHLMSVDGKAFEAGGVLTQEMTSSTGMFLAIIAAL
                     VSVTMLAKFSKSKKLKISMPESVPPAIAKSFNILIPSFLVLSILAIIEVLVVSFVSMS
                     IPEIIVKVLQIPLVGGFQTLPGILLYVFLAGFLWVFGIHGAFVLGAISGPVLLTSLQQ
                     NIDAVNAGTALPNIVTQPFLDAFVYMGGGGTIICLVIAIFIASKRPDHRMVTKFGLIP
                     SIFNVSEPLMFGLPVVFNPIYGIPLVIAPLASTAMAYFATSWGWISQTYILIPWVTPP
                     VLSGYLATGGDIRASILQIAIIIVGTLIYLPFVLVANRAYVLEQKAAGKVEAETVTNG
                     EV"
     gene            complement(9054..11456)
                     /locus_tag="U0280_001210"
     CDS             complement(9054..11456)
                     /locus_tag="U0280_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 9 protein"
                     /protein_id="HEM2271164.1"
                     /translation="MKPSMKRQIAQTGIIHRPLPIETKHALETLAKKKQVLSSRTLFS
                     SKQQVSLEFTHQGAGDFTISDQDEIKLSSPVVMPHWPAGAPDDGDYTNFGNVTISAPI
                     ENEDWSGFNRVRIQVFPDFPGVTNPYLMISFKNDGSVKVPDIYGREGVHGVNLINHEW
                     NDVIFEIEGLPRDRMTEMSFSYYLNGPERLTAGTMELFINEIKLEQISEPEISKGWIP
                     QDNTLVYSHNGYSKGMPKVAFCANKFVATSFTIHDKETDKVVFTGKSYQNATETGDFI
                     ILDFSDLQTVGEYYLKFADMQTEIFQIGTSEVIWESSIWKSLNFIFCERCGCPVFGKH
                     TTCHADIIAEHDGKQLSFNGGWHDAGDVSQQLIQTAEVTMALYEMASSLPEKEEMLRM
                     RLLEEGEWGLDFILKTRFGDGFRATSAGMTRWTDGLVGGMDDAIARVHNQAYENFYCA
                     GIEAYIGSQIADNATMQNHLLRIAEEDLLFAIKELEKHGTSQKPIFWEHTYQTSESLY
                     YATASWAASMVYQLTNKEIYAEKAAEWLYLMLEAQEKAGIRDSETSELYKGFFYRDKT
                     HKVIQHFNHQAREHLYLLALEAALETQPSNAEKQTWLQAVEMYGDYLKKVTRFTKPYP
                     LIPAGLYKKDEYLDEASFHLQHLLIDERAIEEYQLQFEQGIQINDEIALRKFPIWFSF
                     RGNNAILLSAGKAASIAGKILKDKSLLDIAEGQLQWVIGMNPFGQSMMHGEGYRYAQQ
                     YSVLNGEITGEIPVGMETFRNEDEPYWPEFNNATYKEVWVGNAGKWMSIVADLNKITG
                     KS"
     gene            complement(11453..12418)
                     /locus_tag="U0280_001211"
     CDS             complement(11453..12418)
                     /locus_tag="U0280_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2271165.1"
                     /translation="MDIQESVIGIDLGGTKILIGEVTKDGEVLNSKSYPSNTENQTKA
                     TEILLKVLDDYTQNIGFIAPKQTGIGVGLVGRVNHKSGVWLEIEPGKSNPTPLADILE
                     AKTGLPVSLGNDVVCATMAEKQFGWGQETNDFIYLNVGTGLAAGFVVDGRIIQGGHFN
                     AGEIGHAVVDIHSDVLCGCGRRGCVERLASGLGIKEEALRRLNNYPTSILAEAETELT
                     GKMVLHAAEQKDELAEEIIDNATFQLANLIMNLVRTTDPECVILGGGVTQNEHFFQKI
                     LGNLQSNTIRFVTKGVVRSKLEKDKVGLIGAAVIGMRLGNEGGKE"
     gene            12620..13675
                     /locus_tag="U0280_001212"
     CDS             12620..13675
                     /locus_tag="U0280_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2271166.1"
                     /translation="MKKITIQEIAKLSGVSVSTVSRVLNNSPSVSAAKRKKIQAIIDE
                     HNYTPSVFARGMVNKQTKNIGVILPDISNPYFISLITQIQKFALDYMFSTILFNTMLA
                     EPNNKNNQHPLTEEDYLKIILEKQVDGLLILGGEIDKEIVPKEYITALNQLNNEIPVV
                     VIGSKIPELNCLFIERNLKKGVTTLVSHLTALGHKNIGFIGGESGVKITTYRLESFKE
                     AMTSYQHPVNDDWVVLSDYYTADGYAAMTQLLENSATLPTALVAINDNVAIGAIRAIN
                     DAKLSCPEDIAIVSCDQFMNGDYQTPRLTSMDQHNEYLGKMAILQLISAINGQVEPMI
                     INHNPELIIRESCGSKL"
     gene            13692..14501
                     /locus_tag="U0280_001213"
     CDS             13692..14501
                     /locus_tag="U0280_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2271167.1"
                     /translation="MEKYLICSDLDGTLLLKNQTISPKTLNLLQQLIEEGHHFAVSTG
                     RMYNSATDFANLVHPKADVIASNGGVVAVSGEIILQEKMKQSALLETFLLCQNHDLPV
                     FFFSTDTVYYTKNPPYYFTDEEDKGRVNATKLVPIKTKESFLEHADQFINGIVIEEED
                     FDKLAALRSELEKLSDVSILSSHANNIEILPKDMDKKYAVKNLAAHLNIKPENVITFG
                     DGENDIGMLEVAGAGVAMENASELVKKSADFVTTANDADGIYYFLKKYLNR"
     gene            complement(14538..14876)
                     /locus_tag="U0280_001214"
     CDS             complement(14538..14876)
                     /locus_tag="U0280_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2271168.1"
                     /translation="MKVEGLLGFLGAALGIGFSLMVLVIPDISQALEEESFFFYMLTI
                     GSLVLSGVGLAGSFIVSHKPRLGGAMMVAAAIGCTMSISIMFLLPIVLLAVGGLIALI
                     NYEEAASVEE"
     gene            15098..>15503
                     /locus_tag="U0280_001215"
     CDS             15098..>15503
                     /locus_tag="U0280_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2712 domain-containing protein"
                     /protein_id="HEM2271169.1"
                     /translation="MIIIKNFASKNIRLIMALVIGVLVFAPVFHSKAADNNIGFDFKL
                     KPNCANSGSSSRYRETSSVNNPWKVRLDNSTEGKGTIASFWLGTYNKNKNAVQGSTIM
                     NVKQGAKTRYCGAYKVANKNTTYLAAENNNYNS"
BASE COUNT         4670 a         3406 c         2577 g         4850 t
ORIGIN      
        1 cagtaatcga aatcaacatg ggcgtttcat ttctgctttt tagtttttgg gcagtttgga
       61 ttaattcaat gtcatgtcca ccgtacgtaa ggataaaaac taaatcatct ttaccaatat
      121 gcggcaatac agcttggcga tactgataat cttcaggaaa ctctaccaaa aatccgctca
      181 ttgtatagag atatttgatg tatttcgcag catgtttact cagcccttta gcaaaaaaat
      241 aaattcgcgg tttgcttact agttttttgg tgattttctt gattttactt ggttctaaaa
      301 ctcggacaga ttcaataatg tttttcaaat attcttcacg ataatccgac tgttctacga
      361 caaatgggga cggttttagc tctgtatgcc caagtaaagt gaactttaag actgttgtaa
      421 actcgctata accagtaaat ccaagctttc ttacaaaacg caaaaaagtt gttgttgaaa
      481 caaagcattc tgcagaaact tctcgaatac tttgattttt aattaaattc atattcttaa
      541 cgacatagtc aaataaaatc cgctcattcc gagttaggga agctacagtc ttactggaaa
      601 tttcgaaaaa gtccatactt caagtctcct ttttattcac gtatcgtact tttatcaggg
      661 agatgttgcg tgatacagtg aatatttccg ccgcctagca aaatctcacg tgctttaatc
      721 cccacaattt ttctatcagg atataactgt tcaagtaatt cctgcgcatc tttatctttt
      781 ggatcatcaa acaatgggaa aataatagca ccattcgctg tatagtaatt tacataacta
      841 gcagctaatc gatctccagc ctgtctaggg aaagttccat taatcgcctc cacaccttcg
      901 ctctctgttt gcgtaataag tactggatcc ggacaatgta gtttatgtat tataaaagtt
      961 cttcccttag catctgtttg gttagctaaa atatcatagc attctcttga aatttcatac
     1021 tgcggatcac ttttgttatc cgtccacgat aaaacaactt cgccaggtgc cacaaagtta
     1081 aaaatgttat ctacatgtcc gtttgtttcg tcaagataga agccatgctt aagccaaatt
     1141 accttttgta catggaaata tttttttaaa gtttgttcga tttctatttt ggttaaattc
     1201 ggattccttc cttctgataa cagacactct tctgtcgtaa ccagcgtccc ttcaccgtct
     1261 acatgaatgg aacaaccttc taaaataaaa tctttctgtg agtagtaatc aagtcgctct
     1321 atatcacaaa ctttttttgc aatttgatta tctttatccc acggaaaata tagaccatca
     1381 agaagaccac cccaagcatt aaatccccag tcaacaccac gcatttctcc cttatcattc
     1441 accaaaaaac ttggtccata atcgcgtatc cacgcatcat cattactcat ttcgataaca
     1501 cgaatggtat ccggaagttc tttacgagca tttttatatt gatttggtga tacaaacata
     1561 gtgactggct caaaatttga aatagcgact gcaacttctt tatagttttg ttgcgctggc
     1621 tttccaccaa gccgccagtt atcaggtctt tctggccaaa tcatgaaaca gccaatatga
     1681 ggttcgtatt ctcctggcat tctgaatccg tcctctaccg gcaacccttt cagttgtccc
     1741 atcctcattc tcctcctatt acttcataac cacattatac atgaaatact gttttacaag
     1801 acaaaaaccg agtaacaagt acccggattt cgccctattc tactagcccg caataatcac
     1861 tgtccctgcc ccctgttcta gcatggcgcc aatattttca agcgaggtga ttattgcttt
     1921 ggcatttggt ctttctttga caaaagctgt tgctgcttcg attttgggca acatacttcc
     1981 tgctgcaaat tgtttctcat caatatattt ttctaattct gaaacggtaa ctctttcaag
     2041 tttcttttga tttggctgat tataattgat ataaacattt tccacccctg ttaaaataac
     2101 caacaaatcc gcactaatta gttctgcaag tttttcagaa gcaaaatctt tatcgattac
     2161 ggtctctacc ccagataaat caaggccatt ttcaacgacc gaaactccgc ctccaccagc
     2221 agaaatagtc acaacaccac tatcaaccaa ttgtttaata atttgatgtt ctttaatact
     2281 aagcgggcga ggagatggta caactttacg gtaacctcga ccagcgtcct caagaaatat
     2341 tgcaccagtt tctgccattt ccttttcagc ctcttcttta gtaagaaaag gcccaattgg
     2401 tttggttggt tttttaaaag caggatcatc tttatccaca acaacttgtg taattaatga
     2461 aaccgctact ttatctagcc cgtgttttaa aaatgcttta tctagcgcat tttgcatcca
     2521 gtagccaata ctcccttgcg tcattgcgac acacgtatca agcggcattg ctggattctt
     2581 ttcagaagct cccgcatgtt gttgcagcat caggttgcct acttgcggtc catttccatg
     2641 cgaaataatt aaatcatccc cgttttcgat aaattgcacc aaatattcgg ctgttttttc
     2701 aagtgcactt tgttgcgctt cagcactggc atcactcgat aaaattgcat ttccacctag
     2761 tgccacgact attttttgat tcatgctgtt cactccttat cctcttggca cctgttgagt
     2821 aatacagtga atatttccgc caccaagtaa aatttctctt gctttcacac caaccacttc
     2881 acagtttgga taaagttgac gtaatttttc gcgggcaagt tcatcatttg gatccccaaa
     2941 tagcgggaaa accactccac cattcgctgt gtagtaatta atatagcttg ctgccagtcg
     3001 gtcgccttct tcccgtggta gcgttccttc cacagcatct acacctttac tttcttcatc
     3061 ggtaattaaa attggttttg gtacatttat tttatgcact tctaatttgc gcccttttgc
     3121 atcggtttca ttcgataaaa tatcaaagca ttctttagaa atttcatact gcggatcagt
     3181 ttcatcatct gtccacgcga gcgctactac acctgggcgt acataattga aaatattatc
     3241 tacatgacca ttcgtttcat ctaaataaat tcctcgtttt aaccaaataa ttttttctaa
     3301 atttaaatac tcttttaaaa ccatttcgat ttgctgtttt gaaagttgtg gattgcgacc
     3361 ttctgataat aagcattctt ctgtcgttac aagcgtgcct tcaccgtcga catgaatgga
     3421 acctccttct aacacaaaat cagctaagcg ataacgatct tttcgctcta attcgcatat
     3481 tttttgagcg acttgatcat ctttatccca cgggaagtac aaaccatcga ccaatccacc
     3541 ccaagagtta aatgaccaat ccacaccacg tacgtcacca gaatcattga ccacaaaagt
     3601 tggtccagaa tcgcgcaccc aagcatcgtc gttatccatt tccactacgc gaatttcatc
     3661 aggcaacata tatctcgcat ttacatattg acttgaactt gcaacaactg taactggttc
     3721 aaaacgggaa atcgctgtcg ccacatcaac aaaagctttt tgcgcaggtt tggctcctaa
     3781 gcgccaatta tctggtcgtt ctggccaaat aatatagcaa ccagcgtgtt tttcaaattc
     3841 cccaggcatt ctaaatccat cttttttaga agaactatca atcgttctca tttcctatct
     3901 ctcctttgtc ttttcttttc ccagcaagcc aaatacatat ttcaccaaca atcaccgcta
     3961 caacggttcc aattaagatt gggatttttt catttaattc tgcacttgaa ccatttaatg
     4021 gtactgcaga gaaaatcaaa gtaataatga gtaaaatcat tggtacgaaa gtcattaagt
     4081 aaagcaagat tttgccacct ggcactttaa atggacgttc tcggtccgga tccaccttac
     4141 gtaatttcaa aaatgctgga aacattagga tatatgaacc tagtaaagca actacattta
     4201 atgcaaagaa tgcccagaaa atattttcat ttggaataag tggtgccgca acgattaata
     4261 cagaagctac aatcccattt aaaatactag tacccgttgg cataccattt ttcggatttg
     4321 tttttccaaa aacagctggt aaatctttgt ttttcgctgc atacattgct acataattca
     4381 cgcctagtgc ccaagagact aaatttgcta ctaatgtata cataaacata atcccaataa
     4441 taataacaaa tgggttaact ccgccaatca gcataataaa gctatcaata agaccaccgg
     4501 atgttgaaag ttcagaagtc ggaattgctg cccccattcc gaaagctgct agtaaataga
     4561 agaatgcaat caaaacccca ccataaatga ttgcttgagg aatttgtttt ttaggatttt
     4621 ccatgtcact cgcaagcgtt gttaccactt caaaacctaa gaaattaaat aaaatgactg
     4681 aaataaatga caaactctct aaatcaaaag ttggaagtaa tgcttttcca gagaaatcat
     4741 tcgccaatcc cttcgtcatc gcaaaataaa ttccaagtac accaaggcaa agcataattg
     4801 ccactttaca gaaagctgcg atattaagaa tccatttgct atcactcact ggataacaac
     4861 taataataac aacaatccac acaaaaatga gctgaataaa aatcgaaacc ggcgtcccaa
     4921 atgaaaccgg gaaaatttgc gtaataactt ctacaaacaa taccgctaaa ctcgccatcc
     4981 aaatcggata attaatccag tataaccaag cgacacgcgc accccatttt cggccaaatg
     5041 cccgttttac ccaatcatag attccgcctt catcatcata ggttgtccca agttctgccg
     5101 aaacaagtcc atatggtaag aaaaataaaa taagtaacgc aatccaccag aaaaattgag
     5161 atgatcctat cgccgctgct ggcgcggcag attccacaac taaaacgaca catacagcca
     5221 taagaaccgc atcaaataat ctgaatttct tctttttttc caaaatgccc actcctcttt
     5281 ttaagtgggg ggaagaaaac ggccagcgct ctcttctcct ccttattttg gtatcttata
     5341 agccagcgcc atttctaagt aataactcta gttctgcatc atatttttcc gcaactgcaa
     5401 aacccgcttc tctcacatac ggattcataa agtatacaag cagtgctctc atcgctgtta
     5461 aacgattttc agcttcgtca ataacaactg agtatggagc atcaagcact tcgtccgtaa
     5521 cctcttcccc acgagttgcg ggtaaacagt gcataaactt cacatgtgga gccgctttac
     5581 tgatcaattc tttattcact tgatatttag gataaaaagt tttcattcgc tcttcttcgg
     5641 aaagttccgc ttcgtatagg ccataccaaa catctgtata aatgaaatct gcgtctttta
     5701 acgcaatgtc cacatcttct gtaattaaat agctcccgcc agatactttg caattttctt
     5761 cagcgatttt caaatgttct tcacgtaatt gaaatccttt tggtccaaat tgaacgaaat
     5821 ccattccaag ttttgttgcc ataaacattg tagatgcaca tacttgagta gcatctccta
     5881 caaagacaat tttgcagtct tcaatctttt ttccttttgg aaggtgttcg aacatagtaa
     5941 ttgcatcacc taattcttgt gtaggatggt tgtaatcact catcccatta ataaccggaa
     6001 tagcagctgt gtttgcaagt tctactaccg tttgatgacg ttcaacacgc gccatcaaaa
     6061 tatctacaag cctagaaaga actttggctg tatcgcctac tgattcatgt ccgccgagct
     6121 gaatttgtcc aggagctaaa tattgcgcat gaccaccaag ctgtgtcatt gctgtttcaa
     6181 aagatacacg agttcttgtt gatgattgtt caaaaatcat cccaagcgtc ttatgtttta
     6241 aaagttgtgg gtaatgaccg tttttaatag attctttcat tttgcgaccg atttctatca
     6301 taaatagtat ttcttcttta gaaaaatctt tagtgtcgat aaaatctctt tttttgttca
     6361 tttctatcac ctcaaccatt tattttctaa accttttctg gggcatactc gagtatttcc
     6421 ttgccacatg ctcatcatag tacaaaagag attgtttttg aatacgtttt ctttttttaa
     6481 gaacagacgg aatcaccctg taactcgtta cattctgcgt aacatgtgac ccaaatacaa
     6541 aaagaagact ggaaaaaccc tccttataag gatttttcca gtctattagc ctctcttatg
     6601 catagtcacc tggttttgtt ttactcttca tcgctacgcc aaagtctgtg tagatacgtt
     6661 ctgttaattt attgcctttc aactccgcaa tatgatgcgc taaaatttgg aaaggaagaa
     6721 tcattaggaa aggcgcttgg tattcatcta aatctgttgg tataactagc gttcggtcat
     6781 cttcaccttt accaaattta actgtatacg taaacggggt gtatttagat tcataatccc
     6841 gtaacaatac taatcgctcg gtaactgcac tcgccgtctc caagaagaag attctatgtt
     6901 gtggatttac ttctaaatac ggcccatgca taaacgcttc taaatcaaga ccttgtgatg
     6961 gcacgcggac agtttctgag aattttgttt caaattcttt gcatgttcca acagtaggac
     7021 catatccaat tgctgtgaat ttcggtgcag tagcgaattc ctcttgccat ctttcataaa
     7081 atgcttctgt ttcggcaatt gttgctggaa ttgcatcgat tgctcggcta aatgcactga
     7141 tttcattatt gaacctagtt tcatcaattt gtactgtttt gtatgcaaaa tgaagtcctg
     7201 tcagcattaa tgttagaact gttgctgtaa aaccttttgt tacgtagcca actcgttctt
     7261 ttccggagcc aatatcaagc gtaatatccg caaattcagc aatttcactc gttacatcac
     7321 tagttagagc gactactgga acggaagctt cttttttcac tcgttctagc gcagaaatgg
     7381 tcgacgtgct ttgaccgctt tgcgaaatcc cgataaccaa atctagatgg cttgataatt
     7441 tttcataata taaatggttg aagggttctt caatcgtaat gcggacatcg gctagatttt
     7501 caatgtaata tttggcgctt tgagctgcat ttaagcttga tccagttgct aaaattaacc
     7561 attcttttgc gccatttttt acgagtgatt ctagtttttc tgcatttgtt tggaaatctg
     7621 ctaaaattac tcgacacatt tcctcttctt cattaatata cgtcatcatt gttggtttca
     7681 ttttaaactt ctccattcgt tactgtttct gcttctactt tcccagcagc tttttgttct
     7741 aaaacatacg cgcggtttgc tacgagtaca aatggtaggt aaatcagcgt tccaacgata
     7801 ataattgcga tttgaaggat ggacgcgcga atgtctccgc ctgtcgcaag gtaacccgaa
     7861 agcactggtg gcgtcaccca cggaatcaaa atataagttt ggctaatcca gccccatgaa
     7921 gttgcgaagt atgccattgc agtcgaagct agaggtgcaa taactaatgg aataccataa
     7981 atcgggttga atacaactgg cagtccgaac attagtggtt cgctgacgtt gaaaatactc
     8041 ggaattaagc cgaattttgt gaccatgcga tgatccggtc gtttagaagc aatgaaaatc
     8101 gcgataacta aacagatgat ggttccgccg ccacccatgt atacaaaagc atctaaaaac
     8161 ggttgtgtaa cgatgttcgg taaagctgtc cctgcattca ctgcatcaat attttgttgt
     8221 aaagaagtta aaagaactgg tccagaaatc gcgcctaata cgaatgcgcc gtgaatacca
     8281 aagacccata agaatcccgc taaaaataca taaagtagaa tacctggtaa cgtttggaac
     8341 ccgccaacta atggaatttg tagtactttt acgataattt ctggaatact cattgataca
     8401 aaactaacta caagcacttc aataattgct aaaatactta gaactaagaa tgatggaatt
     8461 aaaatgttaa atgattttgc aattgccggt ggaacacttt caggcataga gatttttaat
     8521 tttttacttt tcgagaattt cgcaagcatg gtaacactga ctaaagcagc gatgattgca
     8581 aggaacattc ctgtcgaact tgtcatttct tgggttaaaa cgccgccagc ctcaaaagct
     8641 ttaccgtcaa ccgacattaa atgtgaagat gccggtatta aaacaacata agcagctaca
     8701 gcgataaccc cttccgtacg cccttccatt ccgtatgatt tagctaaaaa gttaccaatt
     8761 aagaatgctg ctaaaatcgc cataataccg agtgtcgcgt tatagacttg aatacctaca
     8821 cccaaataat tttctacatt tggaatgaat ttaagcagac cattttctgg ttgaagtaac
     8881 acgttattta caagcaagaa aaatgcggca ataatcgtaa tcggaatcat cgctgcaaag
     8941 ccatcacgaa ttgccatgat atgcttttgc gatgaaattt tttgggcaaa aattgataat
     9001 ccttcaataa atcggctaga taaacttctc tctgaactca tttttttgtc ctcctatgac
     9061 tttcctgtta ttttgtttaa atctgctaca attgacatcc atttgccggc attaccgacc
     9121 caaacttcct tataagttgc attattaaac tccggccagt atggttcatc ttcatttcta
     9181 aaagtttcca ttccgactgg tatttctcct gtgatttcgc catttagtac actgtattgc
     9241 tgtgcgtagc gataaccttc gccatgcatc attgattgtc caaacgggtt cattccaatt
     9301 acccactgta actgaccttc cgcaatatct aaaagcgact tatctttcaa aatttttcca
     9361 gcaatcgatg cggcttttcc tgccgaaagt aaaatagcgt tatttcctct aaacgagaac
     9421 caaattggga attttcgcaa cgctatctcg tcgtttattt ggataccttg ctcgaattgt
     9481 aattggtatt cttctatcgc ccgttcatct atgagtaaat gttgtaagtg gaaacttgct
     9541 tcgtctaaat actcatcttt tttataaagt cctgctggaa taagcggata tggtttagtg
     9601 aaacgtgtta cttttttcaa atagtcgccg tacatttcga ccgcttgtag ccaagtttgt
     9661 ttttcagcgt tactcggttg cgtttcaagc gccgcctcaa gtgccagtaa ataaagatgt
     9721 tcgcgtgctt gatgattaaa atgctgaatg accttgtgcg ttttatcgcg gtagaaaaat
     9781 cctttgtaaa gttcgctagt ttcgctgtct ctaattccag ctttttcttg cgcttctagc
     9841 atcaaatata accattcggc cgctttttct gcatatattt ctttgtttgt tagttgataa
     9901 accatcgaag ctgcccaaga agcagtcgca taatatagac tttctgaggt ttgatacgta
     9961 tgctcccaga aaatcggctt ttggctcgtt ccgtgttttt ccagttcctt tatcgcaaaa
    10021 agcaaatcct cttccgcgat tctcagcaaa tgattctgca tagtagcatt atccgcaatt
    10081 tggctgccaa tatacgcttc aatcccagca caataaaagt tctcataagc ttggttatga
    10141 acgcgcgcaa ttgcatcatc catcccacca acaagcccat ccgtccatct cgtcatacct
    10201 gcgctagtcg ctctaaaacc gtctccgaag cgcgttttca aaataaaatc tagtccccac
    10261 tcgccttctt ctaaaaggcg catccgcaac atttcctctt tttcaggtaa actcgaagcc
    10321 atttcatata aagccatcgt tacttccgcc gtttgaataa gctgctgcga aacatcgccc
    10381 gcatcgtgcc atccaccatt aaatgacaac tgtttcccat cgtgttcagc gataatatct
    10441 gcgtgacaag tcgtatgttt cccaaaaacc gggcaaccgc atcgttcgca gaaaataaag
    10501 ttaagcgatt tccagataga agattcccag atcacttcgg aagtcccaat ttgaaaaatt
    10561 tccgtttgca tatccgcaaa ttttaaatag tattcaccca cagtttgtaa atcagaaaaa
    10621 tcaagaataa tgaaatcgcc agtttctgtt gcgttttggt aactttttcc agtaaaaaca
    10681 actttgtctg tttctttgtc gtgaattgta aaggaagtcg ctacaaactt gttggcgcaa
    10741 aacgctactt tgggcatgcc cttagagtaa ccgttatgcg aataaactag cgtattatct
    10801 tgcggaatcc aacccttgga gatttccggc tcactgattt gttctaattt aatttcatta
    10861 atgaataatt ccattgttcc agcagtcaat cgctctgggc cattcaagta ataactaaaa
    10921 ctcatttcgg tcattcggtc acgcggcaaa ccttcaattt caaaaatgac atcattccat
    10981 tcatggttga ttaaattcac accgtgaaca ccttctcgcc catatatatc aggcactttc
    11041 acgctcccgt cgtttttaaa actaatcatt aaatagggat ttgttactcc aggaaaatca
    11101 gggaaaactt ggattcgcac acgattaaag ccgctccagt cctcattttc aatcggggcc
    11161 gatatggtaa cgttaccaaa attagtataa tcaccgtcat ccggagcacc agcgggccaa
    11221 tgcggcataa ccacaggcga agaaagcttg atttcatctt ggtcagaaat agtaaaatct
    11281 cctgctcctt gatgtgtaaa ctctaaagaa acctgttgtt tagagctaaa taaagtccta
    11341 cttgataaaa cttgtttctt tttcgctaaa gtttctaacg catgcttggt ttcaataggg
    11401 agtggtcgat gaataatacc agtttgcgca atttgtcgtt tcatacttgg cttcattctt
    11461 ttcctccttc atttcctagt ctcattccaa taacggctgc accaattaag ccaaccttat
    11521 ccttctcaag cttagagcga acaacacctt ttgtaacaaa acgaattgta ttgctttgaa
    11581 gattacctag tatcttttgg aaaaaatgct cattttgtgt cacgcctccg ccaagaatta
    11641 cgcattcagg gtcggttgta cggactaaat tcataatcaa attagctagc tgaaacgttg
    11701 cattatcaat aatttcctct gcaagctcat ctttttgctc cgctgcatga agaaccattt
    11761 ttccagttag ttctgtttcg gcttcagcaa gtatggatgt cgggtagtta tttaaacgtc
    11821 tcagtgcctc ttctttaatc ccaagaccgg aagcaagtcg ttccacacaa ccacgtctac
    11881 cgcaaccaca gagtacatca ctatgaatat ctactacagc atgaccgatt tcacccgcgt
    11941 taaagtgccc gccttgtata attcgtccat ccaccacaaa cccagcagca agaccagtac
    12001 caacatttaa ataaataaaa tcgtttgttt cttgtcccca accaaattgc ttttcggcca
    12061 ttgtggcaca aacaacatca ttgcccagac ttacaggtaa tcctgttttt gcttctaaaa
    12121 tgtctgcgag cggggttgga ttgctttttc caggttcaat ctctaaccaa acacctgact
    12181 tgtgattcac acgaccaact aatcctacac caatacccgt ttgttttggt gctataaaac
    12241 caatattttg cgtgtaatca tctaaaacct ttaacaatat ttcggtagct ttggtctgat
    12301 tctccgtatt acttgggtaa ctcttggaat ttagcacctc accatctttt gttacttcgc
    12361 caattaaaat tttagtgcca cctagatcaa ttccgatgac agattcttgt atgtccaact
    12421 attccacctc atttttggta acgttaccaa attaaaacgt ttgttgatag cgctttctac
    12481 catagaataa ccggatattt ttaatatgtc aacccttttt attatatttt tgataacgtt
    12541 accaaatttc acttgttatt tccccctaag tacgctacac ttaaaatagt taaaaatgct
    12601 tacgaggtga acatttcgaa tgaaaaaaat aaccatacaa gaaatagcta aacttagcgg
    12661 tgtctccgtt tcaactgttt cgcgggttct taataacagt ccttctgtgt cagctgcgaa
    12721 acgcaaaaaa atccaagcaa tcattgatga acataattac acacctagcg tgtttgctcg
    12781 tgggatggtc aataagcaga cgaagaatat aggcgttatt ttaccagata tttccaatcc
    12841 ctatttcatt tcacttataa cgcaaattca aaaattcgcg ctagattata tgttttcgac
    12901 gattttgttc aatacaatgc ttgcggagcc aaataataag aataatcaac atcccctaac
    12961 ggaagaagat tacctaaaaa tcattttaga aaagcaagtg gatggtttac ttattttagg
    13021 tggagaaatc gataaagaaa tcgttccaaa agagtatata actgctctaa atcagttaaa
    13081 taatgaaatt ccagttgttg ttatcgggtc gaaaattcct gagctcaact gtttatttat
    13141 tgaacgtaat ttaaaaaaag gggtaacaac cttagttagt catctaactg cacttggaca
    13201 caaaaatatt ggttttattg gcggagaatc tggtgtaaaa atcaccacct accgtctaga
    13261 atcttttaaa gaagcaatga ctagctatca acatccggta aatgacgact gggtggttct
    13321 gtctgattat tatacggctg atggctacgc agcaatgact caacttttag aaaatagcgc
    13381 tactttgccg acagcacttg tagctatcaa tgacaatgtg gctatcgggg caattcgagc
    13441 gattaatgat gccaaacttt cttgccctga agacatcgct attgtcagct gcgatcaatt
    13501 tatgaatggc gattaccaaa ctccgcgttt aacttccatg gatcaacaca atgaatatct
    13561 tggtaaaatg gctattttac aactaattag cgcaattaac ggtcaagtcg agccaatgat
    13621 tatcaaccat aatccagaac taattatccg cgaatcttgc ggctctaagc tataacgaaa
    13681 ggaaggtcca cttggaaaaa tacttaattt gttctgattt agacgggaca ttactactta
    13741 aaaaccaaac tatctcacca aaaacactaa atttattgca acaactaata gaagaaggtc
    13801 atcattttgc cgtttctacc ggtcgaatgt ataattccgc aacagacttc gccaacctcg
    13861 ttcatccaaa agcagatgtc attgcttcaa acggcggtgt agttgcagta tcaggcgaaa
    13921 ttatcctaca agaaaaaatg aaacaatctg cgttactcga gacattttta ttgtgccaaa
    13981 atcatgattt acctgtgttt ttcttttcaa cagatactgt ttactacact aaaaatcccc
    14041 catattattt tacggatgaa gaagataaag gccgcgtaaa tgctacaaaa ctcgttccta
    14101 tcaaaacaaa agaaagcttc cttgagcatg cggaccagtt cattaatggg attgtaatcg
    14161 aggaagaaga tttcgacaaa ctcgcagccc ttcgaagtga gctagaaaaa ctatccgatg
    14221 tttctatcct ttcttcccat gccaataata tcgagatctt accaaaagat atggataaaa
    14281 aatacgccgt gaaaaatctc gctgcacatt taaatatcaa gccagaaaat gtaattactt
    14341 ttggtgatgg tgaaaatgat attgggatgc ttgaagttgc tggcgcaggg gttgcgatgg
    14401 aaaatgcaag tgaactagtg aaaaaaagtg ctgattttgt tactactgca aatgatgccg
    14461 atggaattta ctactttttg aaaaaatatc ttaatcgtta ataaaaaaag ctgcccacgc
    14521 ggacagcttt ttttcattta ttcttctacg gaagcagctt cttcatagtt aattaatgca
    14581 attaatccgc caacagcaag tagtacgatt ggcagtaaga acataatcga aattgacatt
    14641 gtacagccaa ttgcagctgc caccatcatt gccccaccaa gacgcggctt atgcgaaaca
    14701 ataaacgatc ccgcaagtcc cactccagaa agcacaagtg aaccaatcgt taacatatag
    14761 aagaaaaatg actcctcttc taatgcctgt gaaatatcag gaataactag aaccatcaaa
    14821 ctaaatccaa tacccagtgc cgcccctaaa aagccaagta atccttcaac tttcatgata
    14881 aaaactcctt ttttatacgc attttctttt atgttatcat tttaacaaaa aattgaatag
    14941 ttatcagctt ggacaaatga tttttcgtaa attacttcta aataagcaga cgattatgca
    15001 aacaatttac cgttttctgt aaattcaaaa aacaaattga ccagctcttt atattgtgat
    15061 acgcttaaca agtggcgtta ttctaataga ataggagatg attatcataa aaaatttcgc
    15121 atcaaaaaac attagactaa ttatggcact ggttattgga gtattggttt ttgcacctgt
    15181 ttttcattca aaagccgctg ataataacat tggtttcgat tttaaactca aaccaaattg
    15241 cgctaactca gggtcaagct caaggtatag agagacttct tctgtaaata acccttggaa
    15301 agttcgcctc gataactcaa cagaaggaaa gggtacaatt gcttcttttt ggctaggtac
    15361 atataataaa aacaagaatg ctgtacaagg ctcaacaata atgaatgtta aacaaggtgc
    15421 aaaaacacgt tattgcggcg cttataaagt agctaataaa aatacaacct atttagctgc
    15481 tgaaaataat aattataatt cca
//
LOCUS       DASDXX010000049        15200 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.049, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000049 DASDXX010000000
VERSION     DASDXX010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15200
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.049"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(217..945)
                     /locus_tag="U0280_001216"
     CDS             complement(217..945)
                     /locus_tag="U0280_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271170.1"
                     /translation="MAQNQTKYSFIAEEIRKRIMNHAYPLNQPIPDEITLAKEFDCSR
                     MTMKKALEVLVLEGLLYRKRGHGTFIIKSALDADRLQIHNQEVNGFTKLLNGKKVISK
                     VIEFKVIFPTEEIAERLHIEMETPIYDILRVRLVKDEPYVLEHTYMPVGVIPGINQQI
                     LEGSIYSYIQDDLNLKIASSYKQIRADKATLLDQQYLDCASDDPVVEVEQTVYLNNGL
                     AFEFSKSRHRYDKFVFTTVNIARR"
     gene            complement(989..2383)
                     /locus_tag="U0280_001217"
     CDS             complement(989..2383)
                     /locus_tag="U0280_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2271171.1"
                     /translation="MTYKFPENFWWGSAASGPQTEGAANVDGRKPSIWDHWYKIEPGR
                     FFNDVGPTNTSNFYYQYKEDIALMKQTGHNSFRTSIQWSRLIPDGIGEVNPKAVDFYN
                     RVIDEMLANDVEPFMNLYHFDMPMSMQEKGGFESREVVDAYATFAKTCFELFGDRVKH
                     WFTFNEPIVPVEAGYLYDMHYPNVVDFKRATQVAYHTTLAHALAVKEFHALEIPEGQI
                     GIILNLTPSYPRSQNPADLKAAHIADLIFNRSFLDPVTKGEFPADLVEIIREHDALPE
                     YTEEDLAIIKNNIIDILGVNYYQPRRVKAKEYAAHPDAPFMPEHLFDNYEMPYRKMNP
                     YRGWEIFERAIYDIAINLRDNYDNIPFFISENGMGVEGESRYRNADGMIEDTYRIDFI
                     KSHLKWLHKAIEEGSNCHGYHLWTFMDCWSWANAYKNRYGLVEVDLDNNFKRTIKASG
                     HWYKELSENNGFED"
     regulatory      2504..2605
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            2699..3994
                     /locus_tag="U0280_001218"
     CDS             2699..3994
                     /locus_tag="U0280_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM2271172.1"
                     /translation="MDKFFKLRENKTTVRTEILAGLTTFLSMAYVLFVNPSMLATTGM
                     ELKAVFVATILASVVGSLAMGLIANYPIGLAPGMGLNAFFAYTVCAQWGIPWQTALAG
                     VLVSGLVFICLTISGLREKIVNAIPTELKFAVGAGIGFFIAFLGLKNAGIIVPNESTI
                     VALGDLHSGPVLLAVFGIVVTVAYMTIGWKGAIFFGMATTAVAGMLFGLIDVPTQVVS
                     SVPSMESTFGQAIIHLPDIFTPQMLIVILTFFFIDFFDTAGTLVAVATQAGFVKDNKI
                     PRAGRSLFSDSLATVFGAIFGTSTTTSYVESTAGVAVGGRTGLTAVVIAICFSLSLFF
                     SPLLGVITSAVTTPALVIVGILMIGNVAHIDWTKFEVAVPSFFVILMMVLTFSIATGI
                     AIGFIFYPITMVLKGRYKEVHPIMYVMMVLFILYFMFVV"
     gene            complement(4037..5068)
                     /locus_tag="U0280_001219"
     CDS             complement(4037..5068)
                     /locus_tag="U0280_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HEM2271173.1"
                     /translation="MPDFSYAKITKLVVHFAGNKAREEGTEVSANVLADIGSEMNQTL
                     ASIFLEPFNKDEYYQFTHETDLDFNEVRTFAANMFVAEDEFLDESKKILEHLYSETTH
                     PNIKSGDVWIFFIEGCVVDGDFTNGIGIFKVENKEVFLKNDFNGREFQIGYDKGITGT
                     DLDKGCLVFNVDHDTGNKVLILDRLNRGDSVYWKDKFLSIDKITDEKFYTEGFVEVCT
                     DYIKQREESLLDKSNFVKATSEYLAGEETLNIAEFARTTIEKPEEITEFNTMVDTFER
                     ENNVRFPETFQLDEEKREKLSKKIRKTIKLGKNISVVVKDLEQLEETDFVQGYDEEKG
                     KNYMIVYYD"
     gene            5145..5441
                     /locus_tag="U0280_001220"
     CDS             5145..5441
                     /locus_tag="U0280_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEM2271174.1"
                     /translation="MIPADFEDRVYTVVRQIPRGKVTTYGQIAYMIGFPKNARLVGAT
                     LKHSKRDQITPCHRVINAAGRLVPGWEEQRELLLSEGVTFKENGHVKMKDHFWQ"
     gene            complement(5426..6253)
                     /gene="hisJ"
                     /locus_tag="U0280_001221"
     CDS             complement(5426..6253)
                     /gene="hisJ"
                     /locus_tag="U0280_001221"
                     /EC_number="3.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphatase HisJ"
                     /protein_id="HEM2271175.1"
                     /translation="MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLS
                     SEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIGFEVDYLIGYED
                     FTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYL
                     EGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRD
                     YELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYCQK"
     gene            6405..7583
                     /locus_tag="U0280_001222"
     CDS             6405..7583
                     /locus_tag="U0280_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEM2271176.1"
                     /translation="MNLNKNLPTGTRDKLFREAQAAYKIEQQVNHYFEKRGFKRIETP
                     VIEFEDVFSSEHQADAKLYRFFDEKGRLTVLRPDMTLPIGRVVSTTGVMLPLKLSYSG
                     KIFRANEDFGGEQNEQTQAGIEIIGYPSIKAEIECILSGIGVLNALEIPNFQIELGHA
                     AIYRRVIQLLNLSETAEIDFRQLIQNKSLTGIKRFVANNPSTLDDFILAIPRLFGPAT
                     AILNQAKSLTTDKGILTALREMETIVEAVSYTADISVDLGLVQDFHYYTGIIFRGYAD
                     LAADNFLSGGRYDHLLEQFTSSSSPAVGLALNLDSLTTLQNRAGIIKKQTPTTLLIHY
                     DLEALPQAEKFMQETPNSELSFFETASNAISFAKKWHIPEVVHVSSQGIQTIFQREVD
                     "
     gene            7583..8224
                     /locus_tag="U0280_001223"
     CDS             7583..8224
                     /locus_tag="U0280_001223"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEM2271177.1"
                     /translation="MKALKIALTKGRLEKDAVALLEKAGIDCSSMTDKKRKLIFHSST
                     QPISFILVKAVDVMTYVKHGVADIGIVGKDVLMEASKSHYEMLDLEIGKCQFCLASTP
                     DFDPSSYRRKIIATKYPTVASKFFREKGEDVEIIKIEGSVEIAPVLGLADAIIDIVET
                     GSTLKENGLLIYEKMYPISARLIVNKASLKQNKTQIFQLIDQLEQVIKEERAE"
     gene            8221..9504
                     /gene="hisD"
                     /locus_tag="U0280_001224"
     CDS             8221..9504
                     /gene="hisD"
                     /locus_tag="U0280_001224"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEM2271178.1"
                     /translation="MKILTGTVNELLNELKIETDTNTSIQVETEVKTIIEKVKTAGDQ
                     ALFDFTSKFDGVGLTELRVPAADIQAASVKIEPAFLDALQQAKVNIESFHSKQKQHAF
                     LDSEKDGVIRGQLIRPLETVGVYVPGGTAAYPSSVLMNVLPAKIAGVKRIVMITPPGE
                     NGINPYVLASAQLAGVDEIYQVGGAHGIAALAHGTESIPKVDKIVGPGNIYVATAKRE
                     VFGLVDIDMIAGPSEIVVLADENANPAFIAADLLSQAEHDILARAILITTSKKIAEET
                     QNEIDKQLENLPRKAIAQKSIETRGKIIIAATTQEMFDIMNEIAPEHLEVQLENPMNY
                     LYQIKNAGSIFLGSYASEPLGDYFAGPNHVLPTSGTAKFFSPLGVEDFTKRSAFISYT
                     KEALAKEKDAIVLLAKKEGLDAHAKAIQIRFEEEN"
     gene            9505..10089
                     /gene="hisB"
                     /locus_tag="U0280_001225"
     CDS             9505..10089
                     /gene="hisB"
                     /locus_tag="U0280_001225"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEM2271179.1"
                     /translation="MRTATKTRITAETSIELSINLDSQAESIISTGVGFLDHMLTLFA
                     KHSRITLNVKADGDTYIDAHHTVEDIGITLGLCLKEALADKASINRYGSAYVPMDESL
                     GFCALDLSGRSYLVFDAELTNPKLGDFDTELVEEFFQAVAFNTEMNLHLRVLYGKNTH
                     HKIEALFKAFGRALREAITINPEIKGVNSTKGVL"
     gene            10090..10716
                     /gene="hisH"
                     /locus_tag="U0280_001226"
     CDS             10090..10716
                     /gene="hisH"
                     /locus_tag="U0280_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEM2271180.1"
                     /translation="MIVIIDYDTGNTKSISKALDFIGLQNKISSDKTEIAQADGVILP
                     GVGAYPEAMQELTRRGLDKTLKEIATAGKPILGVCLGMQLLLESSNEHSYTKGLGLIP
                     GHVEMLPDESEFAVPHMGWNQLQIKRTTPLTQNIAGEYVYYVHSYYANCPEAYIIATS
                     GYSIDIPGMINNGNIYGAQFHPEKSGQIGLEILKGFKEVIRSCKSSQQ"
     gene            10695..11417
                     /gene="hisA"
                     /locus_tag="U0280_001227"
     CDS             10695..11417
                     /gene="hisA"
                     /locus_tag="U0280_001227"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEM2271181.1"
                     /translation="MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGA
                     TYLHIVDLDGALEGRPINLEIIQRMKKAAKIPVQVGGGIRSMAQVDYYLESGIDRVII
                     GSAALTDPDFLRAAVQKYGAKIVAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGV
                     ETIIYTDISRDGTLTGPNLEQMANLKEHVKVSLIASGGVSSRADLEALAQLGLYGAIA
                     GKALYNHDISMSDIVEVEQIAY"
     gene            11407..12162
                     /gene="hisF"
                     /locus_tag="U0280_001228"
     CDS             11407..12162
                     /gene="hisF"
                     /locus_tag="U0280_001228"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEM2271182.1"
                     /translation="MLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGA
                     DELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISL
                     NSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKA
                     VQLGAGEILLTSMDGDGTKNGYDIPLTKAISAAVSVPVIASGGCGNAAHMAEVFEKTK
                     ATAALAASIFHYGELSIKNVKTTLLEKGVNIRP"
     gene            12159..12476
                     /gene="hisI"
                     /locus_tag="U0280_001229"
     CDS             12159..12476
                     /gene="hisI"
                     /locus_tag="U0280_001229"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEM2271183.1"
                     /translation="MTSVDFSKGLVPTIILDDQNGDVLMLAYMNEESYQKTLETGYTW
                     FFSRSRNELWNKGATSGHTQKVKQIWTDCDNDTLLIRVTQIGPACHTGKKSCFFNLIK
                     EDF"
     gene            12477..12788
                     /gene="hisE"
                     /locus_tag="U0280_001230"
     CDS             12477..12788
                     /gene="hisE"
                     /locus_tag="U0280_001230"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEM2271184.1"
                     /translation="MLNDLYEEIKLRKTQPREGSYTNYLFDKGLDKILKKVGEEATEV
                     VIAAKNNEQELIAEVSDLTYHLLVLLAEQNIPLSKIQAELQNREGKLSTTRDRKEIND
                     L"
     gene            13281..14657
                     /gene="gdhA"
                     /locus_tag="U0280_001231"
     CDS             13281..14657
                     /gene="gdhA"
                     /locus_tag="U0280_001231"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEM2271185.1"
                     /translation="MAQTSTIQNDTKAAEEYAARVFETIKLRNPGETEFHQAVEEFLN
                     SVIPALAKEPKYEANGILEQLTEPERLISFRVPWVDDSGTVHVNRGYRVQFNSAIGPY
                     KGGLRFHPSVTGSIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDSEVMRFCQS
                     FMTELQKHIGPDTDVPAGDIGVGGREIGYLFGQYKRLRGAYDAGTITGKGLSYGGSLA
                     RTEATGYGLVYFTVEMLEAAGETIRGKKIVVSGSGNVAIYAIEKAHELGAKVVACSDS
                     AGFVYDKEGIKVETVKQLKEVERKRISEYTTIHPSAEYYAGGDVWSVPCDIALPCATQ
                     NEINADQARALVKNGVIAVAEGANMPSTLDAVDIYHENKVLFGPAKAANAGGVAVSAL
                     EMAQNSTRMSWTFQTVDEHLQNIMKDIYKNSSNAASEYGAPGNLVIGANIAGFLKVAD
                     TMISQGII"
     gene            complement(14700..>15200)
                     /locus_tag="U0280_001232"
     CDS             complement(14700..>15200)
                     /locus_tag="U0280_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2271186.1"
                     /translation="VEEMDTDRRTINDKLKIKTTKKNLLSLSDLETGIVYFVSASKQN
                     AALLEQMKAHLIYRELNEVEKEQFEDALIEARQLVEMTGLSSQILQQLSGTYNNILNN
                     NLNDTMKILTALSILLTVPTIITGFFGMNMPLPLEHNTFGWIVTIFISVILWFGLSFI
                     LRKLMR"
BASE COUNT         4649 a         3217 c         2791 g         4543 t
ORIGIN      
        1 taaacaatag aactatattt aaaatctgta cataattggg ctaaatatta taaaagaact
       61 ctaaactatt agcaagtgta taaatatgtc tatattgtga acgattctat tcttttaaaa
      121 aaagtgaatc taataatgac ctatacttca ttaattcttc ctaaaaaaag aaactagata
      181 aaatgatttc tcactttttc tagtttcttt tttactttat cgtctagcta tattcactgt
      241 tgtaaacacg aatttatcat aacggtggcg cgatttggaa aattcaaacg cgagaccatt
      301 gtttaaatac acggtttgtt ctacttcgac aacgggatca tcagaagcgc agtcgagata
      361 ttgctgatca agcagtgtcg ctttatccgc gcgaatttgt ttataggaac tagcaatttt
      421 taggttcaaa tcgtcttgaa tgtacgaata aatcgacccc tctaaaattt gctgattgat
      481 gcctgggata accccaactg gcatatacgt atgttctagc acatatggct catctttcac
      541 tagccgaaca cgaagaatgt catagattgg tgtttccatt tcgatatgaa gacgctctgc
      601 aatttcttca gttggaaaga taactttaaa ctcaataact ttactaataa ctttcttgcc
      661 gttcaaaagt ttagtgaagc cgtttacctc ttggttatga atctgtaagc ggtccgcgtc
      721 cagcgccgat ttgataatga aagtaccatg tccgcgttta cgatatagta agccttcaag
      781 aacaaggact tccagtgctt ttttcattgt cattcgacta caatcaaact ctttcgccaa
      841 agttatctca tcaggaatag gttgattaag cggataggcg tgattcataa ttcttttgcg
      901 gatttcttca gcaataaagc tatattttgt ctggttctga gccacggaag ttcacctctt
      961 tacacataat acttttattt tatcacattt agtcttcaaa accattgttt tctgaaagtt
     1021 ctttgtacca atgtccggat gcttttatag tacgtttgaa attattgtct aaatcaactt
     1081 ctactaagcc ataacggttt ttgtaagcat tcgcccagct ccagcaatcc atgaatgtcc
     1141 aaagatgata accatgacag ttagaacctt cttcaatggc tttatgcagc catttcaagt
     1201 gactcttaat gaaatcgatt cggtacgtat cttcaatcat tccgtctgca ttacggtagc
     1261 gactttcgcc ttctacaccc ataccatttt cagaaatgaa gaatggaata ttatcgtagt
     1321 tatcacgcag attaatcgca atatcataaa ttgctctttc gaaaatttcc caaccacgat
     1381 atggattcat tttgcggtaa ggcatttcat agttatcaaa aagatgttct ggcataaatg
     1441 gtgcatccgg atgagctgcg tattctttcg ctttcacacg acgcggttgg tagtagttta
     1501 caccaagaat atcaataatg ttgtttttaa ttatcgccaa atcttcttca gtatattctg
     1561 gaagcgcgtc atgttcgcga ataatttcaa caaggtcagc tgggaattcc ccttttgtaa
     1621 ccggatcaag gaaactacgg ttgaaaatta gatctgcaat atgagctgct tttaaatctg
     1681 ccggattttg gcttcttgga tacgacggtg ttaagtttaa aatgattcca atttggcctt
     1741 ctggaatttc aagtgcgtgg aattctttaa cagcaagcgc atgtgccaaa gtagtatggt
     1801 aagcaacctg agtcgcacgt ttaaaatcaa cgacattcgg atagtgcata tcgtataagt
     1861 aacctgcttc aacaggaaca attggttcat taaaagtaaa ccaatgtttc acacgatctc
     1921 cgaataattc aaaacatgtt ttcgcaaaag ttgcatacgc gtcaactact tcacggcttt
     1981 caaaaccgcc tttttcttgc atcgacattg gcatatcaaa atgatataaa ttcataaatg
     2041 gttccacgtc atttgcaagc atttcatcaa taacgcgatt gtaaaaatca accgctttcg
     2101 gattcacttc gccaatacca tctggaataa gacgtgacca ctgaattgaa gtacggaaag
     2161 aattatgccc agtttgtttc attaaagcaa tatcttcttt atattgatag taaaaattag
     2221 atgtattcgt aggtcctaca tcgttaaaga aacgacctgg ttcgattttg taccagtgat
     2281 cccaaatact cggttttcta ccatctacat ttgctgcgcc ttctgtttgt gggccggacg
     2341 ccgcacttcc ccaccaaaaa ttctctggaa atttataagt catttttcta cctccaacta
     2401 ttatttgctt ttattatacc ttatttattt aaaagtataa acttatttat ttaaaagttc
     2461 gttttttatt tttatttctt acacgtattg ccaaaaatcg gctaatccgc tacaataata
     2521 aagtcgtata agttcggtaa tatggaccgt tcgtttctac caggcaaccg taaaatgcca
     2581 ggctacgagc tattgtaaaa tttaataggg atttttttgc tatttttatt tattattccc
     2641 ttttttacct aggctctttc cgttatgtgc gacaacataa atagggaggc tttttttaat
     2701 ggataaattt ttcaaactac gcgagaacaa gacgactgtt cgaacagaaa tactcgcggg
     2761 gctaacgact ttcttatcga tggcttatgt acttttcgtc aacccatcta tgcttgcaac
     2821 aactggaatg gaattaaaag ctgtttttgt ggcgacgatt cttgcttctg ttgtaggatc
     2881 gcttgcaatg ggactaatcg ctaattaccc gattggactt gcaccaggta tgggactaaa
     2941 tgcgtttttc gcttataccg tttgtgcgca gtggggaatt ccttggcaaa cggcgctggc
     3001 tggtgttctc gtttctggct tagtgttcat ttgtttaact atttctggac ttcgcgaaaa
     3061 aatcgttaat gcaatcccaa cggaactaaa attcgcagtg ggagcaggta ttggtttttt
     3121 tatcgccttt ttagggctta aaaatgctgg aattattgtg ccaaatgaat ctactattgt
     3181 agcgcttggt gacttacatt ctggcccagt gttactggct gttttcggga ttgttgttac
     3241 tgttgcttac atgacaattg gttggaaagg tgcgattttc tttggaatgg caacaaccgc
     3301 tgttgctgga atgttgtttg gactgattga tgtgccgact caagttgttt catctgtacc
     3361 aagtatggag tcaacgtttg gtcaagcaat tattcactta ccagatattt ttacaccaca
     3421 aatgctcatt gttattttga catttttctt cattgatttt tttgatactg ccgggacact
     3481 tgttgcggtt gcgactcaag ctggatttgt aaaagataac aaaattccgc gcgcaggtcg
     3541 ttcgctattc tcggattcac ttgcaacagt atttggagcg attttcggga cttcaacaac
     3601 gacttcttat gtagaatcta ctgctggggt tgctgttggt ggtcggacag gtttaactgc
     3661 cgttgttatc gcaatctgtt tctcactgtc actattcttc tcgccgcttc ttggcgtaat
     3721 tacaagtgcg gttacgactc cagcgcttgt cattgttggg attttaatga ttggaaatgt
     3781 cgctcatatt gattggacta aattcgaagt agctgttccg tcctttttcg ttattttaat
     3841 gatggtactg actttctcta tcgctactgg tatcgcaatt ggtttcattt tctatccaat
     3901 caccatggta cttaaaggac gctacaaaga agtgcatccg attatgtacg tgatgatggt
     3961 actgtttata ctgtacttta tgttcgtcgt ttagacagca aaaaaaccgg ggattccgca
     4021 tcctcggttt tttcgtttaa tcataataca caatcatata gtttttgcct ttttcctcgt
     4081 cgtatccttg tacaaaatca gtttcttcca gctgttctaa atctttcaca acaaccgaaa
     4141 tatttttgcc aagcttaatc gttttacgta tttttttcga tagtttttcg cgcttttctt
     4201 catctaattg gaatgtttct ggaaaacgga cattgttttc tcgttcgaac gtatccacca
     4261 ttgtattgaa ttcggtaatc tcttccggtt tttcaattgt cgtgcgagca aattcagcaa
     4321 tattcaacgt ctcttctcct gctaaatatt ccgatgtcgc ttttacaaaa ttagatttat
     4381 caagcagtga ttcctcgcgt tgtttaatat aatccgtaca aacttccaca aaaccttccg
     4441 tgtaaaattt ctcatcggtt atcttatcaa tactcaaaaa cttatctttc caataaaccg
     4501 aatcgccgcg gttaagccgg tctaaaatca acactttatt tcccgtgtca tgatccacat
     4561 tgaaaaccaa gcaaccttta tctaaatccg tcccggtaat ccctttatca tagccaattt
     4621 ggaattctct gccattgaaa tcatttttaa gaaaaacttc tttgttttcg actttaaaaa
     4681 tcccgattcc gttcgtgaaa tcaccatcga caacgcagcc ctcaataaag aaaatccaaa
     4741 catcgccact tttaatattc gggtgggttg tttcgctata taaatgctct aaaatcttct
     4801 tggattcatc cagaaactcg tcctccgcga caaacatatt cgcagcaaaa gtacgaactt
     4861 cattaaaatc caaatctgtt tcatgcgtaa attgataata ttcatcttta ttaaatggct
     4921 ctaagaaaat cgaagctagt gtttgattca tttccgagcc aatgtcagcg agcacattcg
     4981 ctgatacttc tgttccttct tctctcgctt tatttccagc aaaatggacc acgagtttag
     5041 taatttttgc gtatgaaaaa tctggcattc ctttatcatc ctaactttta taaaataggt
     5101 atttcctgta tactaaattt attatgaaca aatggaggta cgtaatgatt ccagcagatt
     5161 ttgaagaccg tgtttataca gtcgtgcgcc aaataccgcg cggtaaagtg actacatatg
     5221 gccaaatcgc ctatatgatt ggctttccta aaaacgccag actcgtaggt gctacgctaa
     5281 aacattcgaa gcgtgaccaa attacgcctt gccatcgtgt catcaatgca gctggtcgac
     5341 ttgtccccgg ttgggaagag caacgcgaac tccttttatc agaaggtgtg acatttaaag
     5401 agaatggaca cgtcaaaatg aaagatcatt tttggcaata agtgctatat ccacgtccta
     5461 tatcttgaac accgtgcgag tccgacccat agacaaacgg aatctgtaac tcgctagcta
     5521 atgtcactat tttctttggt gggtatgtct ctccgcaaag gggcttaaat agtcccgccg
     5581 tattaaaatc aagttcatag tctcgttttt tcactaaagc aagaatcacc cgaaatttct
     5641 ccattacttc ctcagaaaaa tcgcttgtat cctccccaaa gaattgctga aacttctgac
     5701 acaatgaaat atgccccatt ctccgcggtt taaaaagtcc taaatccgct tcaattgact
     5761 gttttacacc ttctaaataa gcaagttgcg cttgttcaaa cccgccataa aattgtacaa
     5821 ttccttcatt ataatcctcc gctgaaaaat caatcgaacg aaaaccacct tgcccctcta
     5881 aaaaatgcag cgacaacaca ccatcatccg tttgtggtcc atactcattc aaaaaatccc
     5941 gcgtaaaatc ctcataacca atcaaataat ccacttcaaa cccgatatgt attaataaat
     6001 cgctcgcata ttttttcttt atatggttca ttttcttaaa ataataaggg agatcactca
     6061 ttgccatact agccgttgtc acagcttcct tgtccccagc tgtatttttc ataaattcac
     6121 tcgaaagtgg cgcgtgctct actatagaat actcatcaaa atccagttca atcgctttta
     6181 aaaccatttc ttccacgtca tcatgcgtac catgtggaca aaattctgtg tgcgtatgcc
     6241 cgtctctttt catattcaac cctctttcaa aattcttttc cctaagtgct ctaaatggta
     6301 cactaattat accataagca actatttttc tattcattat ttacaaaaac actttaacgt
     6361 gctaatatgc taataaacta aaatatcgta aaggagctaa ccagatgaac ttaaataaga
     6421 acttaccaac cggaacacgt gataaactct ttcgtgaagc acaagctgca tacaaaattg
     6481 agcaacaagt gaatcattat tttgaaaaac gtggatttaa acgtattgaa acacctgtta
     6541 tcgagtttga agatgtcttt tcttctgaac atcaagccga tgcgaagtta taccgtttct
     6601 ttgacgaaaa aggacgtttg acagttctac gtccggacat gacccttcca attggtcgag
     6661 ttgtgagtac aactggtgtg atgctccctc taaaactttc ttatagtgga aaaatttttc
     6721 gtgccaatga agattttggt ggcgaacaaa acgaacaaac gcaagctgga attgaaatca
     6781 ttggctatcc ttcgattaaa gcagagattg aatgtatttt aagtggaatc ggggttttaa
     6841 atgctctaga aattccgaat tttcaaattg aactcggaca tgcagcaatt tatcgtcgtg
     6901 ttatccaact tttaaatctc tccgaaacag ctgaaattga ttttcgccaa ctaattcaaa
     6961 ataaaagctt aactggtatt aaacgatttg ttgccaataa tccaagtaca cttgacgatt
     7021 ttattctagc cataccaaga ttatttggcc cagcgacagc tattttaaac caagcaaaaa
     7081 gtttaacgac tgacaaagga attttaacgg cactgcgcga aatggaaacc attgtggaag
     7141 ctgtttctta cacagcagat attagtgtcg atttaggact cgtacaagat tttcattatt
     7201 atacaggtat aatttttaga ggatacgctg accttgctgc tgataatttt ttaagcggcg
     7261 gccgttacga tcacctacta gaacaattca ccagctcttc ctccccagca gttggtttgg
     7321 ctcttaatct cgactccctc acaactctac aaaaccgcgc tggcatcatc aaaaaacaaa
     7381 cgccaacaac tcttttgatc cactacgacc ttgaagcact cccacaagca gaaaaattca
     7441 tgcaagaaac accaaatagt gaattaagtt tttttgaaac agcatcaaac gccatctctt
     7501 ttgcaaaaaa atggcatatt cccgaagtcg ttcacgtctc gagccaaggc atccaaacta
     7561 ttttccaaag ggaggtggac tgatgaaagc tctaaaaatt gctctaacga aaggtcgact
     7621 ggagaaagac gcagtggcac ttttggaaaa agctgggatt gactgttctt ctatgacaga
     7681 taaaaagcgt aaactaattt ttcatagtag cactcaacca atctctttta ttttagtaaa
     7741 agcggtcgat gtcatgactt acgtaaagca cggggttgcg gatattggca tcgttggtaa
     7801 agacgtttta atggaagcat ctaaatccca ttatgaaatg ctcgaccttg aaatcggcaa
     7861 atgccagttt tgccttgctt ctacacctga ctttgacccg agcagttatc gacgaaaaat
     7921 catcgcaacc aagtatccaa ctgttgcttc caaatttttc cgtgaaaaag gcgaagatgt
     7981 agaaattatc aaaatcgaag gatccgtcga gattgctcca gtgcttggtc ttgctgatgc
     8041 catcatcgat atcgtcgaaa ctggctccac tttaaaagaa aacggcttac ttatttatga
     8101 aaaaatgtat ccaatctccg cccgtctgat tgtcaataaa gcttccttaa aacagaacaa
     8161 aacgcaaatt ttccaattaa tcgaccaatt agaacaagtg ataaaggagg agcgcgctga
     8221 atgaaaattt taaccggaac agtaaatgag ctattaaacg agctcaaaat agaaactgat
     8281 acgaacactt ccatccaggt ggaaaccgaa gtaaaaacga ttatcgaaaa agtcaaaaca
     8341 gctggcgacc aagccctatt tgacttcaca tccaagtttg acggcgtagg gctcaccgaa
     8401 ctccgcgttc cagccgctga catccaagct gcaagcgtaa aaatcgaacc tgccttctta
     8461 gacgcgctcc aacaagcaaa agtaaatatc gaaagtttcc acagcaagca aaaacaacat
     8521 gctttccttg atagtgaaaa agacggcgtc attcgagggc aattaattcg tccactagaa
     8581 accgtcggcg tttacgttcc cggtggcaca gcagcctatc cttcatcggt tttaatgaat
     8641 gtgttgccag ccaaaattgc cggagtaaag cgaatcgtaa tgattacccc tcccggtgaa
     8701 aacggtatta atccttacgt tctagcctca gctcaactag ctggtgtgga cgaaatttac
     8761 caagttggcg gtgcacacgg aatcgccgct ctagctcacg gaacagaatc tatccctaaa
     8821 gtagataaaa tcgtcggtcc tggaaatatc tatgtcgcca ctgccaaacg tgaagtattc
     8881 ggcttagttg atattgacat gatagccggt ccatccgaaa tcgtcgtgct cgcagatgaa
     8941 aacgccaatc ctgcttttat cgcagccgac ttactctccc aagcagagca cgatatttta
     9001 gcccgtgcta tcttaatcac aactagtaaa aaaatcgccg aggaaacaca aaatgaaatt
     9061 gacaaacagc tagaaaatct accgcgaaaa gcgattgctc agaaatctat cgaaacacga
     9121 ggaaaaatca ttatcgcagc aaccacacaa gaaatgttcg atatcatgaa cgaaatcgcc
     9181 ccagaacact tagaagtaca acttgaaaat ccgatgaact atctctatca aattaaaaac
     9241 gctggctcca ttttcttagg gagttatgca tcggaacctc ttggcgacta ttttgctggc
     9301 ccaaatcacg tcttacctac aagtggtacc gcaaaattct tctctcctct tggtgttgaa
     9361 gattttacca aacgttccgc ctttatttct tatacaaaag aagcactcgc aaaggaaaaa
     9421 gatgctatcg ttttacttgc taaaaaagaa ggtctagacg cccatgccaa agccattcaa
     9481 attcgttttg aggaggaaaa ctaaatgaga acagcgacta aaacacgcat tactgctgaa
     9541 acttctattg agctttccat taacctagat tcccaagcag aatcaattat ttctactgga
     9601 gtcggatttt tggatcacat gctcaccctt ttcgccaaac acagccgaat aactttaaat
     9661 gtaaaagcag atggtgatac atatatcgat gcgcatcaca ccgtagaaga catcggcatc
     9721 acactcgggc tttgtttaaa agaagcactt gctgataaag caagcattaa tcgttacggc
     9781 tccgcttatg taccgatgga cgaatcactt ggcttttgcg cactagattt aagtggtcgt
     9841 tcttatttag tttttgacgc cgaattaaca aaccctaaac tcggtgattt tgacacagaa
     9901 ctagtggaag aatttttcca agcagttgcc tttaacacgg aaatgaacct tcatctccgc
     9961 gttctttatg gcaaaaacac gcatcataaa atcgaagcac tttttaaagc attcggtcgt
    10021 gctcttcgtg aagcaatcac gattaaccca gaaatcaaag gtgtaaattc aactaaaggg
    10081 gtcctgtaaa tgattgttat tattgactac gatacaggaa atacgaaaag catcagtaaa
    10141 gcccttgatt ttatcgggtt acaaaacaaa atttctagtg ataaaacaga aatcgctcaa
    10201 gctgatggtg ttattttgcc cggagttggt gcttatccag aagccatgca agaactcact
    10261 cgacgcggat tagataaaac attaaaagaa attgctaccg ctggtaaacc aattcttggc
    10321 gtttgtcttg gtatgcaact attactcgaa tcaagtaacg aacatagcta tactaaaggg
    10381 ctcggcctca ttcccggtca tgtcgaaatg ctaccagacg aatccgaatt tgccgttccg
    10441 cacatgggct ggaatcaatt acaaatcaaa cgcaccaccc cgcttacaca aaacattgct
    10501 ggagaatatg tctattacgt tcattcttac tatgccaact gtccagaagc ttacattatc
    10561 gcaacaagtg gttattctat tgatatccct ggcatgataa ataacggcaa tatttacgga
    10621 gcacagttcc atcctgaaaa aagcggccaa atcggtcttg aaattttaaa aggttttaag
    10681 gaggtcattc gttcatgcaa atcttcccag caatagactt aaaaaatgga cagtgcgtcc
    10741 gtctcttcca aggcgacttc tctaaaaaaa cagttgtcaa tgaagaccca attgcccaag
    10801 caaaagcatt tgctacagac ggcgcaacct atttgcacat cgtcgaccta gacggtgcat
    10861 tagaaggacg tcctatcaat ctagaaatta ttcaaaggat gaaaaaagca gctaaaatcc
    10921 ctgttcaagt tggtggagga attcgtagca tggcgcaagt ggattattat cttgaatccg
    10981 gcatcgaccg cgtgattatc ggttctgccg ctctaacaga tccagatttc ctacgtgcgg
    11041 cagtccaaaa atacggagct aaaattgtag caggtatcga tgccaaaaac ggttttgtcg
    11101 caacaagagg ttggctcgat gtcagtcagg taagctattt agatttggct aaacgaatgg
    11161 aaaaagtggg tgttgagaca atcatttaca ctgatattag ccgtgatggc acgctaactg
    11221 gacctaattt agaacaaatg gcaaatctca aagaacacgt taaagttagt ttaattgctt
    11281 ctggcggagt gagcagtcgt gcagatttgg aagcactcgc ccaactcggc ttatatggag
    11341 caattgccgg aaaagccctt tataatcatg atatttccat gtcagatatt gtagaggtgg
    11401 aacaaattgc ttactaaaag aatcatccca tgtcttgatg tcacagcagg tcgagtcgtc
    11461 aaaggtgtta attttgtttc cttaacagat gtcggggacc ctgtcgaaat tgctaaagct
    11521 tataatgaag ctggtgccga tgagctcgtc tttcttgata tcacggcaac tgtcgaactc
    11581 cgtcaaacca tgatagatgt tgtggaacga actgctgagc aagtttttat tccactcaca
    11641 gttggtgggg gtatcagtag tgtttctgac atgaaagaac ttcttcaagc cggagccgac
    11701 aagatttcgc ttaattccgc cgccatcaaa cgaccagaac tcatccaaga aggagcagca
    11761 aaattcggaa accaatgtat cgttgtcgca attgatgcaa aatggaatgg tacaaattgg
    11821 agcgtcttca cgagaggcgg tcgaaatgat accggacttg atgctattga atgggctaaa
    11881 aaagctgtac aacttggtgc tggtgaaatc ctactaacaa gtatggacgg cgatggaacc
    11941 aaaaacggtt acgatattcc gctcacaaaa gcaatttcag cagcagtttc cgtcccagtc
    12001 attgcttcag gcggttgcgg gaatgccgca catatggccg aggtttttga aaaaacaaag
    12061 gcaaccgccg ctctcgctgc aagcattttc cactacggtg aactaagcat caaaaatgtc
    12121 aaaacaacct tactcgaaaa aggagtgaat attcgtccat gacttctgta gatttttcta
    12181 aaggtcttgt cccaactatt atcctagacg atcaaaatgg cgacgtttta atgctcgctt
    12241 atatgaacga agaaagttat caaaaaaccc ttgaaactgg ctatacttgg tttttttcgc
    12301 gctccagaaa cgaactttgg aataaaggcg cgacaagcgg acatactcaa aaagtaaaac
    12361 aaatctggac cgattgtgat aacgacacat tacttatccg cgtaacccaa atcggtccag
    12421 cctgccacac cggcaaaaaa agctgctttt tcaatcttat aaaggaggat ttttaaatgt
    12481 taaatgacct atatgaagaa attaaactgc gtaaaactca accaagagaa ggctcctata
    12541 ccaactattt gttcgataaa ggccttgata aaattctcaa aaaggttggt gaagaagcaa
    12601 ccgaagtcgt tattgctgcc aaaaataacg agcaagaatt aatcgctgaa gtatccgatt
    12661 taacttatca cttgctcgtt ctcttagccg agcaaaatat tccattatca aaaatccaag
    12721 cagagcttca aaatcgtgaa ggaaagctaa gcaccactcg cgaccgtaaa gaaattaacg
    12781 atttataaaa acatgacatt ttcgtaagct tagagatcat tattgtaaga aaaagcgcat
    12841 gatttttaaa tacatttttt atatacttgt ttacgtggag agctttcatt ttcccaagag
    12901 aaagcaaata atgttagagc aataattcta gtatccgaat tagtcttatc ccttggctcg
    12961 ctttaatatt atttctccct aatactccct taaccgcatc cccctggtgc ggttattttt
    13021 ttattacatc ttcaatttct acgcattaaa acctaagcaa acgttctcat taactacatt
    13081 ttaaaaaatt tcagaaaaat tggtttttat gcttgaaaat attctcaaca atgtgtaaac
    13141 taacaacata ggtaagaaaa gttgacctac ttaatgtaca caagccgatg ttcttcttgc
    13201 tttataacat cacgtgtatt tacattaagt tttctacttt tccttatagt caaaatattt
    13261 aaacaaggag cgattatagt atggcacaaa catccactat tcaaaatgac acaaaggcag
    13321 ccgaagaata cgcagctcgc gtgtttgaaa caattaaact acggaatcct ggcgaaacgg
    13381 aattccacca agcagttgaa gaattcttaa actctgttat cccagccctt gcaaaagaac
    13441 ctaaatacga agcaaatggt attttagaac agttaacaga acccgaacgc cttatcagtt
    13501 tccgagttcc atgggtggat gattctggca cagtacatgt aaatcgcggt tatcgtgtcc
    13561 aattcaatag cgcaattggt ccatataaag gcggccttcg tttccaccct tccgttactg
    13621 gaagcatcgt taaattcctc ggttttgaac agatcttcaa aaactcccta actggcttac
    13681 caatcggtgg cggtaaaggt ggctctgact ttgatccaaa aggaaaatca gactcagaag
    13741 taatgcgttt ctgccaaagt tttatgactg aactacaaaa acatatcggt ccagatacag
    13801 atgttcctgc tggtgatatt ggtgttggtg gtcgtgaaat tggctactta ttcggtcaat
    13861 acaaacgtct tcgcggtgcg tatgatgccg gtacaattac aggtaaaggc ctttcttacg
    13921 gcggaagttt agctcgtaca gaagctacag gatacggtct tgtttatttc accgttgaaa
    13981 tgttagaagc agccggtgaa accattcgcg gcaaaaaaat cgtcgtttct ggttcaggta
    14041 acgttgcgat ttatgcaatc gaaaaagcac acgaattggg cgctaaagta gttgcatgta
    14101 gcgattctgc tggttttgtt tatgacaaag aaggtatcaa agttgaaaca gtaaaacaat
    14161 taaaagaagt agaacgtaaa cgtattagcg aatacacaac cattcatcca tctgcagaat
    14221 attacgcagg cggcgacgta tggtccgttc catgtgatat cgcactacca tgtgcaactc
    14281 aaaatgaaat caacgctgac caagctcgtg cccttgtaaa aaatggtgtt atcgctgttg
    14341 cagaaggcgc aaacatgcct tctactcttg atgcagtgga tatttaccac gaaaataaag
    14401 ttctattcgg tcctgcaaaa gctgccaatg ctggtggtgt tgccgtatca gcacttgaaa
    14461 tggcacaaaa cagcacacgt atgagctgga ctttccaaac agtcgacgaa catttacaaa
    14521 acatcatgaa agatatttat aaaaattcaa gcaatgctgc aagcgagtac ggcgcacctg
    14581 gtaacctagt tatcggcgca aatatcgccg gattcctcaa agtagcagac acaatgattt
    14641 ctcaaggtat tatttaattc aaaaagccct tctttctatc cgaaagaagg gcttttttgt
    14701 tatctcatta attttcgtaa aataaaggaa agtccgaacc atagaatcac actaataaaa
    14761 atcgtcacaa tccaaccaaa cgtattatgt tctaaaggaa gtggcatgtt cattccaaag
    14821 aagcccgtaa taatagtagg aaccgtcaat aaaatggata gcgccgttaa aattttcatc
    14881 gtatcattca aattattgtt caaaatatta ttatatgtac ctgacaattg ctgtaagatt
    14941 tgagagctca gccccgtcat ttccaccagt tgcctcgctt caattaaagc atcttcaaat
    15001 tgttcctttt ccacttcatt aagctcacga taaatcagat gggctttcat ttgctccaga
    15061 agcgccgcat tttgcttaga tgccgaaaca aaataaacaa tcccagtttc caaatcagat
    15121 aatgacaata aatttttctt cgtcgtttta attttcaatt tgtcattaat cgttcttcta
    15181 tccgtatcca tttcttccac
//
LOCUS       DASDXX010000050        14969 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.050, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000050 DASDXX010000000
VERSION     DASDXX010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14969
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.050"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            9..794
                     /gene="sufC"
                     /locus_tag="U0280_001233"
     CDS             9..794
                     /gene="sufC"
                     /locus_tag="U0280_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEM2271187.1"
                     /translation="MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKST
                     LSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARAGLFLAMQYPSEISGVTNAEFIR
                     AAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLL
                     MIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHV
                     MMQGKVVKEGGPELAKRLEAEGYDWIKQELGIELEEEEAVDQQ"
     gene            813..2114
                     /gene="sufD"
                     /locus_tag="U0280_001234"
     CDS             813..2114
                     /gene="sufD"
                     /locus_tag="U0280_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEM2271188.1"
                     /translation="MAENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFV
                     DKTKITRWNFTKFETFIPFKEGVTNETLPEKVANLVDLDNKEANFYVQMDERPARLQL
                     QQELVDQGVIFTDIISAVKNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVP
                     KNVEVKAPIQAVFVQDKAESPLVNHVLLVADDNSAVTYVENYVTVDNAPKGIVSIVEE
                     VIAEKNARITFGGVDNLASDVTTYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLM
                     GDGSSADVKTVTVGRGKQTQNVTTRVTHYGKASNGTILSHGVMKERATTIFNGIGHIK
                     HGASKSDAQQESRVLMLSPEARGDANPILLIDENDVVAGHAASVGRVDPLQLFYLMSR
                     GISQKEAERLVIHGFLDPVVRQLPIESVKTMLREVIEGKVR"
     gene            2115..3341
                     /locus_tag="U0280_001235"
     CDS             2115..3341
                     /locus_tag="U0280_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2271189.1"
                     /translation="MIDIQKIRADFPILAQEINEKPLAYLDNAATSQKPKQVIEALTH
                     YYEFDNANVHRGVHTLAARATDAYESARGKVAKFIHAREVAEIIFTRGTTSAINLVVD
                     SYAEANIEAGDEIVISYLEHHSNLIPWQQLAKRKGAVLKYIELEEDGTISVEQAKKTI
                     GEKTKIVALAHVSNVLGTITPMKEIAAIAHQFGAVILVDGAQAVPHMEVDVVDLDADF
                     YAFSGHKMMAPTGIGALYGKRELLDAMEPTEFGGEMIDFVELYDSTWKELPWKFEAGT
                     PIIGGAIALGAAIDYLAEVGLANIHAHEQALASYAIEEMSKIEGITIYGPKDASKRCG
                     LVTFNLEGAHPHDIATILDEDGIAIRAGHHCAQPLMKWLDVSSTARASFYIYNTKEEI
                     DALIDGLKLTKEYFGL"
     gene            3338..3781
                     /locus_tag="U0280_001236"
     CDS             3338..3781
                     /locus_tag="U0280_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEM2271190.1"
                     /translation="MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQ
                     IHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGH
                     DHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK"
     gene            3804..5198
                     /gene="sufB"
                     /locus_tag="U0280_001237"
     CDS             3804..5198
                     /gene="sufB"
                     /locus_tag="U0280_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEM2271191.1"
                     /translation="MTEIPEIGEYQYGFHDKDTSVFRTERGLTEKVVREISNIKEEPE
                     WMLEFRLKSLEQFYKMPMPTWGGDLSELKFEDITYYVKPSEQTVRSWDEVPEEIKRTF
                     DKLGIPEAEQKYLAGASAQYESEVVYHNMKQDLEDLGIVFKDTDSALKENEDIFKEYF
                     AKVIPPSDNKFAALNSAVWSGGSFIYVPPGIKVDTPLQAYFRINSENMGQFERTLIIV
                     DENASVNYVEGCTAPVYTTNSLHSAVVEIIVKPGAYCRYTTIQNWANNVYNLVTKRTF
                     CEENATMEWIDGNIGSKLTMKYPAVHLRGEGARGTTLSIAIAGKGQRQDAGAKMMHYA
                     PNTSSTIVSKSISKQGGNVTYRGIVHFGRNADGARSNIECDTLIMDNLSTSDTIPYNE
                     ILNSNISLEHEAKVSKVSEEQLFYLMSRGLSEEEATEMIVMGFIEPFTKELPMEYAVE
                     MNRLIKFEMEGSIG"
     gene            5333..5647
                     /locus_tag="U0280_001238"
     CDS             5333..5647
                     /locus_tag="U0280_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271192.1"
                     /translation="MTEIKYLEGMYQDPFFPPFLVDKIKQCIFDTVQFLEQGNHDTEA
                     IQAKFDEMTLAINALQDEFYENESELETGARDSIAETIIPILAHYKIDIDIEELLRER
                     EW"
     gene            5789..6631
                     /locus_tag="U0280_001239"
     CDS             5789..6631
                     /locus_tag="U0280_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEM2271193.1"
                     /translation="MVTIGLTGWSDHDSLLQSKKLTLADYAAHFPVVEVDTSFYAIPS
                     PRTTANWAAQTPDEFRFVIKAFSAMTKHKEWSQYFDSENAMYTAYMDMIAPISETGKL
                     QAILFQFPPYFNCTKENVTYLKYIASKMGDLPVAIEFRNSSWYNEQNTEKTLELLREL
                     GFIHTVVDEPQVGSGSVPIVLRETNSDMTLVRLHGRNQYGWMKANSPEWREVRTLYRY
                     NEEEINEWAKYVEHLQKLSKEVVVIFNNNSGGDAADNAKHLQKALQVEFQGLAPMQMD
                     LFSE"
     gene            complement(6664..7029)
                     /locus_tag="U0280_001240"
     CDS             complement(6664..7029)
                     /locus_tag="U0280_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1634 domain-containing protein"
                     /protein_id="HEM2271194.1"
                     /translation="MAEKKEEMYRVELIVSALLRIGVVLSAIIIVFGLVMLFITGESG
                     YPGETYPTSLTAIFSGLGTLKPYAIMMFGLFCLILTPVLRVVVSLFTFLKEKDYLYVG
                     ITGIVLIILVISFLIGIKA"
     gene            complement(7030..7869)
                     /locus_tag="U0280_001241"
     CDS             complement(7030..7869)
                     /locus_tag="U0280_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM2271195.1"
                     /translation="MDITQTVEILLISVFAGVVGSLLGLGGGIIVTPALTLIFGIDIQ
                     YAIGASIISVIATSSGSAIAYIKDGITNLRVGMFLEIATTIGAITGAFVSGLLSATAL
                     YIIFGLLLLYSAFNMIKKVGTEFPTNVKPDPLATKLNLHDSYYDKSLRQTVDYQVANV
                     PAGFGVMYGAGIASGLLGIGSGAFKVMALDVFMKMPLKVSSATSNLMMGVTAAASATV
                     YLFQGDIQPAIAAPVAIGVLVGATLGTRIMQRLKSKVIRIIFIPVILYVAFQMILEGL
                     GWI"
     gene            8005..9393
                     /locus_tag="U0280_001242"
     CDS             8005..9393
                     /locus_tag="U0280_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009924752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HEM2271196.1"
                     /translation="MKHLTLWHTNDVHSHLEHWPRIFNFLKEKRTAADKENQSALFFD
                     IGDFLDRVHPLTEGTNGLANTDLLNQLPYDAVTFGNNEGTTLAHEDLDKLYEHAAFPV
                     VCCNFYANKECTKQSDWVKSIVYKEVEQVKIAIIGATAPFREYYEAMGWGVEEPISAI
                     KKQIAGLDANTDVVILLSHLGLPTDERIALELPEIDIILGGHTHHLLENGKIEGNALL
                     AAAGRWGEHVGKVTIELDENNQIISKKAVTFATEKLPIPPNETAEIQAFFDKGREELS
                     EKVVAIPRKLAHNWFDDSEIAHILNEAVCEWTGAETFVMNAGIFMTDFEAGIVTEFDI
                     HQMLPHPLNAIALTMSGEELEILIDGIYRKKAELQDIPLRGFGFRGEYFGTVLMDRAG
                     FDAENQVALFDNKPIDKTREYRIATHDTFVFAPFFPIVKQIKRKEVYTPELLRDILKW
                     KLKKMYGQEEDK"
     gene            9390..9665
                     /locus_tag="U0280_001243"
     CDS             9390..9665
                     /locus_tag="U0280_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YutD family protein"
                     /protein_id="HEM2271197.1"
                     /translation="MTITIQDLNYEIITNYRDAFDEEKLNERFSDILGRYDYIVGDWG
                     YDQLRLKGFFEDDNRKAAYDNKISTLKEYIYEYCNFGCAYFVIKKVK"
     gene            9685..10452
                     /locus_tag="U0280_001244"
     CDS             9685..10452
                     /locus_tag="U0280_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HEM2271198.1"
                     /translation="MKNYKAYLIDLDGTMYRGAEVISEAIIFIENLKRAGIPYLFVTN
                     NSTKTPGQVAEHLTDMGIQAVSEDVFTTSQATVQFMIEQKREKSVYVIGERGIKQELT
                     DNGFEITSSNPAFVVVGLDREVNYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPG
                     NGSITSVVSVATETAPVFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINY
                     GMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWKFN"
     gene            10501..10944
                     /locus_tag="U0280_001245"
     CDS             10501..10944
                     /locus_tag="U0280_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271199.1"
                     /translation="MVSIQKLTKDNFHETAKLEVHPHQKTFVAENWYSIIEASFEETY
                     HSLVIYAENIPVGYAMYGMDTDDGEFWLVRFMTGKEHQGKGYGGDALEQIIEIVKNLP
                     EKPARLRLSYEPDNTVAEKFYAKYGFEKTGEIIDGEAVADLWFKR"
     gene            10980..12290
                     /locus_tag="U0280_001246"
     CDS             10980..12290
                     /locus_tag="U0280_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM2271200.1"
                     /translation="MDIFNDFFVIFLIAATAFFVASEFAIVAIRKPTVLQLVASEDPR
                     AKYVKKVTSNMNDYLAACQLGNTLAALAMGWVGEATMRGWLEPLFLMLPVPESVEKPI
                     SIFVSFILITFLNVVLGELAPKTFTIQSTEKVALFIARPLVYWYRLTFPLNWLLNNSA
                     NLITRMFGVKQTVDADQMTPTELKIIFEDSYRQGLLNPQEFRYMKNIFKLGDVPAKEV
                     MIPRMSMIAIDQTATVRDLLKLTSEHTYHIFPVTEDEDKDHIIGMLRVSAVMAGLGKD
                     ETIVTQSIQPFITPVLEVFEGMILEELLVKMQQESEPFVVLTDEYGGTSGIVTLEDVM
                     EVIVGDMEEAKGPKGIRKVALNHYIIEGSEPLLEVEEALGVPIEGPGVHTLSGWMLLE
                     RFDLEAGDEIEHEGYRFIVRSMNKNSIRQVEVKLGKEKPVKLEE"
     gene            complement(12315..12815)
                     /locus_tag="U0280_001247"
     CDS             complement(12315..12815)
                     /locus_tag="U0280_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEM2271201.1"
                     /translation="MVEKQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELD
                     ICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALS
                     IVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSY
                     HDDIVN"
     gene            complement(12928..13164)
                     /locus_tag="U0280_001248"
     CDS             complement(12928..13164)
                     /locus_tag="U0280_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEM2271202.1"
                     /translation="MEEISYAEVDKALKKFRPFLVRDGGDYELIEVTQDGVVKIKLLG
                     ACETCPSSDMTLKMGIELTLAEKIIGFKEVVQVF"
     gene            complement(13337..>14969)
                     /locus_tag="U0280_001249"
     CDS             complement(13337..>14969)
                     /locus_tag="U0280_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271203.1"
                     /translation="SLNTLRGLTIAYADNNNITDLSNLKDFFEGMDVVGDYKGLQVNN
                     QTITLPTINIKEGGTAISNNPTLDIDGEKMPVSSISDGGTVSTDNKTVSFTNLPVGNK
                     TVTYKATFTATSTKGVPLSYSIKVSQPINVSAQSDSTVNVFYKDENGDELAPSETISG
                     KSGENYQTIEKTITNYTLKEIEGQPSGQFGDSDATVTYVYEKADGAPVIVKYVDADGN
                     ELATSDTLNGKIDAPYQSTAKSITGWAVKTTPTNATGVFTNANQTVTYVYEKADGAPV
                     TVKYVDADGNELATSDTLNGKIDAPYQTTAKSLSGWAVKTTPANATGVFTNANQTVTY
                     VYEKADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAKSLSGWTVKTTPANATGV
                     FTNANQTVTYVYEKADGAPVTVKYVDADGNELATPDTLNGKLDTSYAATAKNLSGWKL
                     TATPANANGVFTTDAQTVTFVYAKQEDNPKKEDKNKTPIKISENKPTASKVTRIKKQT
                     KLPKTGDNQQDSILFGLIGTCFVLLGIYSISKKNS"
BASE COUNT         4707 a         2661 c         3350 g         4251 t
ORIGIN      
        1 acttttttat ggcaacttta aagattcaag atttacatgt tgaaatagaa ggaaaagaaa
       61 ttttgaaggg tgttaacctg gaaatttcaa ctggcgaaat ccacgctatc atgggaccga
      121 acggaacagg taaatctacg ttgtcctcag ctattatggg gcatccaaaa tatgaagtaa
      181 cacaaggaac aatcacgctt gacggggaag atgtactcga aatggaagta gacgaacgcg
      241 ctcgtgctgg tcttttctta gcgatgcaat atccaagtga gattagtggt gttacaaacg
      301 ctgaattcat tcgtgcagca atcaatagcc gccgcgaaga aggcgacgaa attccagtaa
      361 tgcaattcat ccgcaaacta gatgccaaaa tggatatttt agatatggac gaagaaatgg
      421 cggaacgtta tttaaatgaa ggattttcag gcggagagaa aaaacgtaat gaaatcttgc
      481 aattattaat gatcgagcca aaattagcga ttttagatga aattgactct ggtcttgata
      541 ttgatgcgct taaagttgtc tctaaaggtg taaatgaaat gcgcggcgaa ggattcggtt
      601 gcttaatcat tacccattac caacgtttac tgaactacat cacgccagat tttgttcacg
      661 taatgatgca aggtaaagta gtaaaagaag gcggacctga acttgcgaaa cgtttagaag
      721 cagaaggtta tgactggatt aaacaagagc ttggtatcga acttgaggaa gaagaagcag
      781 tagaccaaca ataaggaagt gaggttaaaa tcatggcaga aaatatgacg attaaagatg
      841 attttatcca cgctttttca agtaatgcga atgaaccgga ttggttttta gatatccgtc
      901 gcaatgcttt taaagcttac ggggaactgg acttgccttt tgtggataaa acaaaaatta
      961 ctcgctggaa tttcacaaag tttgagacgt ttataccttt taaagaaggc gtaacgaatg
     1021 aaactctacc ggaaaaagta gcgaatttag ttgatttaga taataaagaa gccaattttt
     1081 acgttcaaat ggatgaaaga cctgcgagac ttcagttgca acaagaacta gttgaccaag
     1141 gcgttatttt cacagatatt atttcggctg tgaaaaacca tcctgaactt gtgaagaaat
     1201 atttcatgaa agatgcagtt caagtgaatg aacacaaact gactgctttt catgcggcgc
     1261 ttgtgaacgg tgggattttc ctttatgttc ctaaaaatgt cgaagtgaaa gcaccaattc
     1321 aagctgtttt cgtacaagat aaagcggaat ctccacttgt taaccatgtg ttgcttgtgg
     1381 cggatgataa tagcgcagtc acttatgtgg aaaactacgt aacggtagat aacgcaccta
     1441 aagggattgt tagcattgtg gaagaagtaa tcgctgagaa aaatgcgcgc attacttttg
     1501 gcggtgtaga caatcttgca agtgatgtta cgacatatgt gaaccgtcgt ggacacattg
     1561 gaacagatag ccaaattgaa tgggcgcttg gcctgatgaa tgatggcgat actatcaacg
     1621 agaacgtaac aaacctaatg ggtgacggat cttctgctga tgtgaaaact gtgacagttg
     1681 gacgcgggaa gcaaacgcaa aacgtgacaa cgcgcgtgac acattacgga aaagcttcta
     1741 atggtacgat tttatcccat ggtgttatga aagaaagagc gacaactatt tttaacggaa
     1801 ttggtcacat taaacatggc gcttctaagt cagatgcaca acaagaatca cgtgtactga
     1861 tgcttagtcc tgaagcacgc ggtgatgcga acccaatttt attaattgat gaaaatgacg
     1921 tagtagcagg gcatgcggct tctgttggac gcgttgatcc actacaatta ttctatttga
     1981 tgagtcgcgg gatttctcaa aaagaagcag aaagattagt tattcatggc ttcttagacc
     2041 ctgttgttcg tcagttacca atcgaaagtg tgaaaacgat gcttcgtgaa gtaatcgaag
     2101 ggaaagtgcg ctaaatgatt gatatccaaa aaattcgggc ggattttcca attttagctc
     2161 aagaaataaa tgaaaaaccg ctagcttatt tagataatgc tgccacttca caaaagccga
     2221 aacaagttat tgaagcttta acacattact atgagtttga taatgcgaac gttcaccgcg
     2281 gtgtgcatac acttgcagca agagcgacgg atgcttatga atcagctcga ggtaaagtag
     2341 ccaagtttat tcatgcgcgt gaagtagcag aaattatttt cacaagaggt actacttcag
     2401 cgattaattt agttgtagat agttacgcgg aagcaaatat tgaagcgggc gatgagattg
     2461 ttatttctta tctagagcat cattccaatt tgattccgtg gcaacaacta gctaaacgca
     2521 agggcgcggt tttgaaatat attgagttag aagaagatgg aacgatttct gtggaacaag
     2581 cgaaaaaaac gattggtgaa aaaacgaaaa tcgttgcatt agctcatgtt tctaatgtac
     2641 tcgggactat cacgccaatg aaagaaatcg cagcaattgc tcatcaattt ggagcagtca
     2701 ttctcgttga cggtgcgcaa gctgtgcctc acatggaagt tgatgtagtt gatttagatg
     2761 ctgactttta tgctttttca gggcacaaaa tgatggctcc tactggcatt ggcgccttgt
     2821 atggcaaacg tgaattgctt gatgcgatgg aacctaccga atttggcgga gaaatgattg
     2881 attttgttga attatatgat tcgacttgga aagaactgcc gtggaaattt gaagctggaa
     2941 caccgattat tggcggagcg attgcgctag gtgcggcgat tgattacttg gcagaagtcg
     3001 gactcgcaaa tattcacgca catgaacaag cattagccag ctacgcgata gaagaaatga
     3061 gcaaaatcga aggcattacc atttatggac caaaagacgc gagtaaacga tgtggcttag
     3121 tgactttcaa tttagaaggc gcacacccac acgatattgc gactattttg gacgaagacg
     3181 gaattgcgat tcgagctggt catcactgtg cgcaaccgtt gatgaagtgg cttgacgttt
     3241 cttccacagc tcgcgcaagc ttttatattt ataatacaaa agaagaaatt gatgcgctta
     3301 tagatggcct caagttaaca aaggagtatt ttggattatg acaagccgga aattagatca
     3361 gctttataga caagtcatta tggatcacta taaaaatccg cgcaataatg gagagctccc
     3421 agatagcgat gtaacaatcg acctcaacaa cccaacatgc ggtgatcaaa ttcatcttca
     3481 tttaaaaatg gatggtgata aaatcgttgc ggcaaaattc actggtagcg gctgttcgat
     3541 ttcgatggcc tctgcttcga tgatgacgca aagcattatt gggaaaaccg agaaagaggc
     3601 actaaaaatg tcacgtgaat tttcagaaat ggtgcaaggt catgaccatg aaacgattga
     3661 tgaatacggc gacgttgagg cacttgccgg agttgcgaaa ttcccagcaa gaatcaaatg
     3721 tgcaaccctt tcttggaaag caatggagag agcgattttt gaaaaagaag gaacaaaata
     3781 agtagcgaaa aggaggatac gacatgactg aaattccaga aattggcgaa taccaatatg
     3841 gattccatga caaagatacc tctgtgttcc gtacagaacg cggattaaca gaaaaagtag
     3901 taagagaaat ttcgaatatt aaagaagaac cagaatggat gcttgaattc cgtttgaagt
     3961 ctttggagca attttataaa atgccaatgc cgacttgggg tggcgacctg tcagaactga
     4021 agtttgaaga catcacttac tacgtgaaac cgtctgaaca aacagtgcgc tcttgggatg
     4081 aagttcctga agaaattaaa cgtacttttg ataaattagg tattcctgaa gccgaacaaa
     4141 aatatttggc tggggcatct gcgcagtatg aatccgaagt agtttatcac aatatgaagc
     4201 aagacctaga agatttaggg attgtcttca aagatacaga ttccgcgtta aaagaaaacg
     4261 aagatatttt caaagaatat ttcgcaaaag taattccacc aagcgacaac aaattcgctg
     4321 cgctaaactc ggctgtttgg tcaggtggct cattcatcta cgtaccacca ggtatcaaag
     4381 tagatacgcc acttcaagcc tatttccgca ttaactcgga aaacatgggt caatttgagc
     4441 ggacactaat tattgtggac gaaaatgcca gcgtaaacta cgtagaaggc tgtactgctc
     4501 ccgtttatac tacgaattcc cttcactctg ctgtcgtgga aatcattgta aaaccaggcg
     4561 cttactgtcg ttacacaacc atccaaaact gggcaaataa cgtttacaac ctagtaacga
     4621 aacgtacttt ctgtgaagaa aatgcgacaa tggaatggat tgatggcaac attggttcga
     4681 aattaacaat gaaataccca gctgtacatt tacgaggcga aggagcacgt ggaacgaccc
     4741 tttctatcgc gattgctggt aaaggccaac gtcaagacgc tggagcaaaa atgatgcact
     4801 atgcgccgaa tacgtcctct acgattgtgt cgaagtcgat ctcgaaacaa ggcggaaacg
     4861 taacgtatcg cggaattgtt cattttggtc gtaatgcaga cggtgcacgt tcgaatatcg
     4921 aatgtgatac gctgattatg gataacctgt ccacatcgga cacaatcccg tacaacgaaa
     4981 tcctaaacag taacatttca ttagaacatg aagccaaagt ttccaaagta tccgaggaac
     5041 aacttttcta tctaatgagc cgtggtttaa gcgaagaaga agcgacagaa atgatcgtta
     5101 tgggcttcat tgaaccattt acgaaagaat taccaatgga atatgccgtt gagatgaacc
     5161 gtttgattaa gtttgaaatg gaaggctcga ttggttaaat aaagcaaaag acgaactttt
     5221 tagttcgtct ttttttgatg aaatccaaaa atagcaggga ataaatctgg cttgtatttt
     5281 tataaatgaa gtgatatatt ggttccaaca atttagcaaa ggactgataa ttatgacaga
     5341 aattaaatat ttagagggaa tgtatcaaga tccattcttt ccaccgtttc tagtagataa
     5401 aattaagcaa tgtattttcg atacggttca atttttagaa caagggaatc atgatacaga
     5461 agcgattcaa gctaaatttg atgaaatgac attagcaatt aatgcattgc aagatgagtt
     5521 ttatgaaaat gagagcgaat tagaaacagg agcaagggat tccattgctg aaacaatcat
     5581 cccgatttta gctcattata agatagatat cgatattgaa gaattactta gagagcgcga
     5641 gtggtaatat atgataaaga cttcaactgc tagacagttg aagtttttgt tttgtttcga
     5701 agtaaaaacg aggaccaaat taaaggcttc tccctccttt ttgcgttata ataaacataa
     5761 atcataacga tagagagggt ggcagttgat ggtaacaatc gggttaactg ggtggagtga
     5821 tcatgattct ttattacaat caaaaaaatt aacattggct gattatgcgg cacattttcc
     5881 tgtggtggag gttgatacga gtttttatgc gattccttct ccgcgaacaa cggcaaactg
     5941 ggcggcgcaa actccggatg aatttcgttt tgtgattaaa gcattttcgg cgatgacgaa
     6001 acataaggaa tggtcgcagt attttgatag tgaaaatgcg atgtatacgg cttatatgga
     6061 tatgattgcg ccgataagtg aaacgggaaa actacaggca attttatttc aatttccgcc
     6121 gtattttaat tgtacgaaag aaaatgtgac ttatttaaaa tatattgctt cgaaaatggg
     6181 tgatttaccg gtggcgattg aatttcgcaa tagttcttgg tataacgagc aaaataccga
     6241 aaagacgctg gagttgctgc gagaattagg ttttattcat acggtcgttg atgaaccgca
     6301 agttggttct gggagcgtgc cgattgtgct gcgtgagacg aatagcgata tgacattagt
     6361 gcggcttcac ggccggaatc agtatggttg gatgaaagct aacagtcccg agtggcgcga
     6421 ggttcgcacg ctataccgtt acaatgaaga ggaaattaac gaatgggcaa aatatgtgga
     6481 acatttacaa aaattgtcca aagaagttgt cgtgattttt aataataaca gcggcgggga
     6541 tgcggctgat aatgcgaaac atttacaaaa ggcgttacaa gttgagtttc aaggcttggc
     6601 tccgatgcaa atggatttgt tttcagaata aaaaaagatg gcgcatcgct agcgccatct
     6661 tttttatgct tttataccaa ttaaaaagct aataactaaa ataattaata caatcccagt
     6721 tatcccaacg tacaaataat ctttttcttt caaaaaagta aataacgata caacgacacg
     6781 aaggacgggc gttaaaatta agcaaaagag gccaaacatc ataatcgcgt atggtttaag
     6841 cgtccctagc ccgctgaaaa tcgccgtaag cgaggttgga taagtttccc caggatagcc
     6901 actttcgccg gtgataaata gcataacaag accgaaaaca ataataatcg cactgaggac
     6961 aacaccgatt cgtagcagtg cgctaacaat tagctccacg cggtacattt cttctttttt
     7021 ctctgccatt taaatccacc ccaatccttc taaaatcatt tggaaggcaa catataaaat
     7081 gacgggaata aaaataatcc gaataacttt gctttttaaa cgttgcataa tgcgcgttcc
     7141 aagtgttgca ccgacaagta cgccaatcgc aactggagct gcaatagcgg gctggatgtc
     7201 gccttggaaa aggtacacgg ttgcactggc agccgcagtt acgcccatca ttaaattact
     7261 cgttgcgcta cttactttta gtggcatttt cataaagaca tcaagtgcca tgactttaaa
     7321 tgcgccacta ccgattccaa gtaagccact agcaatacct gcgccgtaca tcacaccaaa
     7381 accagcagga acatttgcca cttgatagtc aactgtttgc cgtaaagatt tatcgtaata
     7441 agaatcatgt aagtttagtt tggttgcgag tgggtctggt ttcacattgg taggaaattc
     7501 tgtaccgacc tttttaatca tgttgaaagc agaataaaga agtaaaagtc cgaagatgat
     7561 gtagagtgcc gtggccgaga gcagtccgct gacgaaagcc ccagtgattg caccaattgt
     7621 tgtggcaatt tcgagaaaca tcccgacacg aagattggtg atgccgtctt tgatataagc
     7681 gatggcagaa ccactacttg ttgcgatgac ggaaataata ctcgcaccaa tcgcatactg
     7741 aatatcaatc ccgaaaataa gagtcaaggc aggcgtcacg ataattccgc caccaagccc
     7801 gagcaaagag cctactaccc ctgcaaaaac agagattaga agaatttcga ctgtttgcgt
     7861 aatatccaaa aaaatcactt ccctttaaaa caatatatcc tatcataaca taaaatgaaa
     7921 agggaacaat tcatccagtc ctagtgcgtg taaaaaaagc tgttttacgc tacaatagtt
     7981 ataagtaggg agtgagatgg atagatgaaa catttaactt tatggcatac aaatgatgtt
     8041 catagtcact tggaacattg gccacgcatt tttaatttct taaaagagaa aagaactgct
     8101 gcagataaag aaaatcagtc ggcgctcttt tttgatattg gtgatttttt ggaccgggtc
     8161 catccgctta ctgaaggaac gaacgggctt gcgaatacgg acttacttaa ccaactgccg
     8221 tatgatgcgg tgacttttgg taataatgaa ggaacgactt tggcccatga agacttggat
     8281 aaattatatg aacatgcggc cttcccagta gtttgctgta atttttatgc gaataaagag
     8341 tgtacaaagc agtcggactg ggtgaaatcg attgtttata aagaagtaga acaagtgaaa
     8401 attgctatta tcggtgcaac ggcgccgttt cgggaatatt acgaggcaat gggctgggga
     8461 gtagaagaac caattagcgc gattaaaaag caaattgctg gcttagacgc gaatacagat
     8521 gtagttattt tactgagtca ccttggcttg ccgacagatg aaagaattgc tttagaatta
     8581 ccagaaattg atattatatt aggtgggcat acccatcatt tacttgaaaa tggaaaaata
     8641 gaaggaaatg cattactggc tgctgccgga agatggggcg agcatgtagg gaaagttact
     8701 atcgagctag atgaaaataa tcagattatc tctaaaaaag cagtaacttt cgcaaccgaa
     8761 aaacttccaa tcccaccaaa tgaaacggca gaaattcaag ctttcttcga taaaggacgg
     8821 gaggaactct ctgaaaaagt agttgcgatt cccagaaagt tagcgcataa ttggtttgat
     8881 gactcggaaa ttgcgcacat tttgaatgaa gcggtttgtg aatggactgg ggcagaaaca
     8941 tttgtgatga acgcaggcat ttttatgaca gactttgaag cagggattgt gacggaattt
     9001 gatatccacc aaatgttacc tcatccgctc aacgcgattg ctttaacgat gtctggtgag
     9061 gagcttgaaa tacttattga cggaatctac cgaaagaaag ctgaactgca agatattccg
     9121 cttcgaggtt ttggtttccg aggcgagtat tttggcaccg ttttgatgga cagagctggt
     9181 tttgatgcgg aaaatcaagt ggcacttttt gataataaac cgattgataa aacgcgggaa
     9241 taccggattg cgacgcatga tacgtttgtg ttcgcaccat ttttcccgat agtaaagcaa
     9301 attaaacgaa aagaagtata tacaccggag ttactccgag atattttaaa atggaaactt
     9361 aaaaaaatgt acggacagga ggaagacaag tgacgattac gattcaagat ttaaactacg
     9421 agattatcac caattatcgc gatgcttttg acgaggagaa gttaaatgaa cggtttagcg
     9481 atattcttgg gcgatatgat tatatagtag gcgactgggg ttacgatcaa ctccgtctca
     9541 aaggcttttt tgaagacgat aaccgcaaag ccgcatacga caacaaaatt agcacgttaa
     9601 aagaatatat ttacgaatac tgcaattttg gttgtgcgta ttttgttatt aaaaaagtaa
     9661 aatagtaaaa gaggtaatta ggaattgaag aattataaag cgtatttaat tgatttagat
     9721 ggcacgatgt atcgcggggc agaagttatt tctgaggcga tcatttttat cgaaaactta
     9781 aaacgtgcgg gaattccgta tttatttgta acaaacaatt caacaaaaac acctgggcaa
     9841 gtagcagaac atttaactga catggggatt caagctgtaa gtgaggatgt tttcacgacg
     9901 tcacaagcaa ccgtgcaatt tatgatagaa caaaaacgcg aaaaatcggt ttatgttatc
     9961 ggtgaacgtg gaataaaaca agaactaaca gataatggat ttgaaataac ttctagtaat
    10021 ccagcttttg ttgtcgttgg gcttgaccgg gaagtcaatt atgagaaatt ttcaaaagca
    10081 gcgcttgcgg ttcgcggtgg agcgatgttt atttcgacga atggcgatgc ggcaattccg
    10141 acagagcgtg gtttgcttcc gggaaatggt tccatcacat ctgtcgtttc tgtagccaca
    10201 gaaacagcgc cagtttttat tgggaagcct gaatccatta ttatggagca agcactcgca
    10261 aaactcggtg tccataaaga cgaggcaatc atggtgggtg acaactacga aaccgatatt
    10321 atggcgggca tcaattatgg catggatacg ttaatcgtac acactggctt tacatcaaaa
    10381 gaagcattat taacgaaaga aatccaacct acatacgctg taaccaaact aactgattgg
    10441 aaatttaact agaagagcgg aatttttctg ctcttttttt aataaatagg aggttagaaa
    10501 atggtctcaa ttcaaaagtt aacgaaagac aattttcacg aaacagcaaa attagaagtg
    10561 catccacacc aaaaaacatt tgtcgcagaa aactggtatt ccattatcga agcaagtttt
    10621 gaagaaacgt atcattcgct tgtaatatac gcggaaaata taccggttgg ctacgcaatg
    10681 tatggaatgg atacagatga tggtgagttt tggttggtac gatttatgac tgggaaagag
    10741 catcaaggta agggctacgg cggagatgcg ctagaacaaa ttatcgagat agtgaaaaat
    10801 ctaccagaaa aaccagcacg tctgcgtcta tcttacgaac cagataatac ggtagcagag
    10861 aaattttatg caaaatatgg atttgaaaaa acgggggaga tcatcgacgg cgaggcagtg
    10921 gccgacttgt ggttcaaacg ttaaaatcgg gtatagaatg gggataagga ggatgctaaa
    10981 tggacatttt taatgatttc tttgtgatat ttttaattgc agcgaccgcc tttttcgtgg
    11041 caagtgaatt tgccattgtc gcaatccgga aacctactgt cctgcaacta gtagcctcag
    11101 aggacccgcg agcgaaatat gtaaaaaaag ttacttcgaa tatgaatgat tatttggctg
    11161 cctgtcagtt aggtaataca cttgccgcac ttgctatggg gtgggttggt gaagcaacaa
    11221 tgcgtggctg gttggagccg ttatttttaa tgttacctgt accagaatcc gttgaaaagc
    11281 cgatttcgat ttttgtttcg tttattttaa ttacattctt aaatgtggta ctcggggaac
    11341 ttgctccgaa aacatttaca attcaaagca cagaaaaagt agctctgttt atcgcgcgcc
    11401 cgcttgtgta ttggtatcgc ctgacttttc cactcaattg gcttttaaat aactcggcga
    11461 atttaatcac gcggatgttt ggggtaaaac aaacagttga tgcggaccaa atgacaccga
    11521 ccgaactgaa gattattttt gaagatagct ataggcaagg acttttgaat ccacaagagt
    11581 ttcgttatat gaaaaatatt ttcaaactcg gggacgtgcc agcgaaagaa gtaatgatac
    11641 cgcgaatgtc aatgattgcg attgaccaaa cggcgaccgt aagagattta ctgaaattaa
    11701 cttctgaaca tacatatcat atttttccag ttacggaaga tgaagataaa gatcatatta
    11761 tcggaatgct acgagtcagt gcggttatgg ctggacttgg aaaagatgaa acgattgtga
    11821 cgcaatctat tcaaccattt attacacctg ttttagaagt gtttgaaggc atgattttgg
    11881 aagagttact tgtgaaaatg cagcaagaaa gtgagccgtt tgtcgttctc acggatgaat
    11941 acggcgggac ttcggggatt gtgacgctag aagatgtcat ggaagtaatt gttggtgata
    12001 tggaagaagc aaaaggtccg aaagggattc gaaaagtagc tttgaatcat tatattattg
    12061 aaggatctga gccgcttctt gaagtcgagg aagcactggg ggtcccaatt gaagggccgg
    12121 gtgttcatac gttatcggga tggatgttgc tcgaacgttt tgacttagaa gctggtgatg
    12181 agattgaaca tgagggatac cgctttatcg ttcgttcaat gaataaaaac tcgattcggc
    12241 aagtagaagt aaaattaggg aaagaaaaac cagtaaaatt ggaggaataa gcctcttgtt
    12301 ttactggttt ttgtttaatt aacgatgtcg tcgtgataac tatgcgcaag ccgacttgca
    12361 gcggccgcag cgatagcgcc aacaatatca tcgagaaatg tgtgaacggc gataccatcg
    12421 tgttcattta attttgcaag aatacctggt tttactttat cgatataacc gtaattggta
    12481 aatccaatag atccgtacac attgacgatg gagagcgcaa gtatctcgtc gacgccgtac
    12541 agcccctcat cagcgctaat gatattttgt agtggttgga cgagttctcc tttttcagcc
    12601 atcacatcaa gctgtatgcc tgttaaaact gcattttgaa cttcacgctt gcgaagaaca
    12661 tgctccacat tttgacggca aatatctaat tccaatccgg gatgatattt ttgttgtaaa
    12721 aataatacaa gttctgcgat atcatcaatt tctacgcccc gttcgatgag ccaactgcgt
    12781 gcttttgatt ctaaggcact ttgtttttct accatttttt cttacctcct tctaactgta
    12841 tgtatattgt atgatagacg tttacaggat ttctaaacct ttttatacaa aaatagcgac
    12901 cgattgtttg gtcgctaaaa tatttgttta aaaaacctga acaacttctt taaagccaat
    12961 aattttttct gctaaagtta attcgatacc catttttaaa gtcatatcag aactggggca
    13021 agtctcgcat gcaccaagta gtttaatttt tacgacaccg tcttgtgtga cttcgataag
    13081 ttcatagtcc ccgccatcac gaactaaaaa cggacggaac ttttttaaag ctttatcaac
    13141 ttcggcgtag ctaatttctt ccataggata tagttctcct ttcgtgaggc attgttatat
    13201 tttctattat aacaggatat ggggaaattt aaagaaatta aattgggttt tctgaggttg
    13261 gaagtagtgc aatatgaagt aattaccaaa caaaaactct cttatccaat tgataagaga
    13321 gttttagcta tttattttag ctgtttttct tagagataga gtaaattcct aagagaacga
    13381 aacatgtacc aattaatcca aacaatatac tatcttgttg attatcacca gttttcggta
    13441 attttgtttg ttttttgatt ctagttactt tgcttgctgt tggtttgttt tcgctgattt
    13501 taataggtgt tttgttttta tcctcttttt taggattgtc ttcttgttta gcatatacaa
    13561 aggtgactgt ttgagcatca gttgtaaata cgccattagc gttggctggt gtggctgtta
    13621 gcttccaacc actcaagttt ttagctgttg ccgcgtaaga tgtatctagc ttaccgttca
    13681 atgtatctgg agtagctaat tcgttgccgt ccgcgtcgac gtatttcacg gtaacaggag
    13741 cgccgtccgc tttttcatac acataagtga ccgtttggtt agcgtttgtg aatacgcccg
    13801 ttgcgttggc aggagtcgtt ttgactgtcc aaccagaaag acttttagcg gtagtttgat
    13861 aaggagcatc aattttgccg ttcagtgtgt cggaagtagc taattcgttg ccatccgcgt
    13921 cgacatattt cacggtaaca ggagcgccgt ccgctttttc atagacataa gtgaccgttt
    13981 ggttagcgtt tgtgaatacg cccgttgcgt tggcaggagt cgttttgact gcccaaccag
    14041 aaagactttt agcggtagtt tgataaggag catcaatttt gccgttcagt gtgtcggaag
    14101 tagctaattc gttgccatcc gcgtcgacat atttcacggt aacaggagcg ccgtctgctt
    14161 tttcatagac ataagtgacc gtttggttag cgtttgtgaa tacgcccgtt gcgttggttg
    14221 gagtcgtttt gactgcccaa ccagtgatgc ttttggctgt agattgataa ggagcatcaa
    14281 ttttgccgtt cagtgtgtcg gaagtagcta attcgttacc atccgcgtcg acatatttca
    14341 cgataacagg agcgccgtcc gctttttcgt aaacgtaagt gactgttgca tcactatcgc
    14401 caaattgtcc tgaaggctgg ccttcaattt cttttaatgt gtagttagta attgtttttt
    14461 ctattgtttg ataattttct ccggatttac cagaaattgt ttcacttgga gctaattcat
    14521 cgccattttc atctttgtaa aatacgttta ctgttgaatc ggattgtgca gatacattaa
    14581 ttggttgcga tactttaata gaataactaa gtggtactcc tttagtggag gtagctgtga
    14641 atgttgcttt ataagtaaca gtcttatttc caactggtaa gttagtaaaa gaaacggttt
    14701 tattatcggt agatactgtt ccgccatcag aaatgctaga aacaggcatt ttttcgccat
    14761 caatatctaa agtagggtta tttgaaatag ctgttccacc ttctttgata ttaatagttg
    14821 gaagtgtgat agtttggttg ttaacttgta aacctttata atctccaacg acatccatgc
    14881 cttcaaaaaa gtcttttaaa ttactcaaat cagtaatgtt attattatca gcataggcta
    14941 tagttaatcc tcttagtgta tttaaagaa
//
LOCUS       DASDXX010000051        14928 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.051, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000051 DASDXX010000000
VERSION     DASDXX010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14928
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.051"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(235..1062)
                     /locus_tag="U0280_001250"
     CDS             complement(235..1062)
                     /locus_tag="U0280_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2271204.1"
                     /translation="MANVAIDTVITDMDGTLLVKKGDQIHPLNKEVLMEWQKNGKKLF
                     LATGRLDLAILPFIHELNIKTPVISCNGGLVRDFTTGEILYKSNIELDLIHTVLETLE
                     PLDVNYHIYTTERILGPTNTGKIAFFNELNKTLPENEQVPITLTTDPFSVLREGEFPL
                     KVLVIESDLEKRAEIKAALEGLPLSVLASASNLIDIMNEGIDKAKGLTYLAENGYINL
                     DSTIAFGDNENDVGMIELAEIGVAMENGIPLALEKADKIAKHHDIGGLGLFMQEEIL"
     gene            1177..2052
                     /locus_tag="U0280_001251"
     CDS             1177..2052
                     /locus_tag="U0280_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2271205.1"
                     /translation="MKKYFITIMILLFGALFLSACQKDDEVENSSPPKVDLKNEIPII
                     LIHGSGGDTHSLDEMADHLMNEYKSSNEAMSMSINSKGKITYQGKLTKDAKRPIIKFG
                     FDQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYFAEDYSNDNAVPT
                     LRKLVAIGSPFNDLDPDDNGEDLAFNKLPSNTPQLDYFIDKETKISTDLEVLSIAGAL
                     SEDNLTDGIVPTNSSLASRLFMPNNAKVYMEDLQVGESAIHQTLHETSESIEKTHWFL
                     EKSSPEKKEIKLISK"
     gene            2063..2356
                     /locus_tag="U0280_001252"
     CDS             2063..2356
                     /locus_tag="U0280_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2271206.1"
                     /translation="MLHIQAKVQVKPDLVAEFLVEVNLVIQGSLSETENHGYELVHSV
                     ENANIFYILEKWTDEAAIQFHNGTEHYKRFKKNVPAFLAMPIEVDLLAPVERR"
     gene            complement(2272..2511)
                     /locus_tag="U0280_001253"
     CDS             complement(2272..2511)
                     /locus_tag="U0280_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271207.1"
                     /translation="MDGEQTIESLEVEEIVYEQIIRTKEGYTNTGKFIFTKTKMMLVA
                     KKFLLKKYYRRSTGASKSTSIGIAKKAGTFFLKRL"
     gene            complement(2580..3248)
                     /locus_tag="U0280_001254"
     CDS             complement(2580..3248)
                     /locus_tag="U0280_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271208.1"
                     /translation="MTLMMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAG
                     KSTFLSIAGALLSPTEGEIAIGGKVLNDLTSKELTKVRLDKVGFIFQGANLIPYLNVR
                     DQLLVIAELSGEKGRGAKEKADELLKELGLTARENNYPESLSGGEKQRVAIARALMND
                     PDIILADEPTASLDANRGHKVVQMIANEVKRKNKAAIMVTHDERVLDLVDRVIRIEDG
                     YLKD"
     gene            complement(3248..4336)
                     /locus_tag="U0280_001255"
     CDS             complement(3248..4336)
                     /locus_tag="U0280_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271209.1"
                     /translation="MFLALRELKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNG
                     AAISSNKATYYVLQKDSDNRLTRSNLTASETDSVAKQVKKSESTNLGVQMGTITPPNK
                     DKKTDITYFGIDKTGFMKPAITEGTEPEKTKEVVADISLKESGYKLGSKLKDSATGEE
                     FTITAFTKNNTFSHSPVIFVGWDAWKLVHQTNQAAEGEYNAVALDVSESTAKNLSLGS
                     MELSSSKEVLQGIPGYSEEQGSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKA
                     VGARTAYLGRSIVTQVVFLSVVSLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALF
                     LVVAVIGSMLSLYRVAKVDALEAIGRAN"
     gene            complement(4415..5794)
                     /locus_tag="U0280_001256"
     CDS             complement(4415..5794)
                     /locus_tag="U0280_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM2271210.1"
                     /translation="MKSLYSRIVVTMLVVIISSSLLGFFFANIYYQIKLKPFNDEKTA
                     KIAEEVQQFYESNATISLNEYLENVGELGYELYLTDGAEKSTYYGGAFRKKDLPDKTI
                     KQVLDGETYHGIDSFDTGIFITGFFDNDVRNTIGVPVQADGKQLALFIRQDPEKQFGE
                     LRIFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEI
                     GQLADSFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAE
                     YLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKE
                     LTINLDLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDS
                     GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGT
                     TFKVKLPKN"
     gene            complement(5791..6468)
                     /locus_tag="U0280_001257"
     CDS             complement(5791..6468)
                     /locus_tag="U0280_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2271211.1"
                     /translation="MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETE
                     QVHLAVIDVMMPNMDGFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTK
                     PFEPEELIFRIRALLRRSNQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLY
                     QLASYPGRIFTREELIERIWQRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVG
                     YKLEETT"
     gene            complement(6515..7300)
                     /gene="fdhD"
                     /locus_tag="U0280_001258"
     CDS             complement(6515..7300)
                     /gene="fdhD"
                     /locus_tag="U0280_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEM2271212.1"
                     /translation="MDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVC
                     TPEYLEDLVVGFLTSEGIVRGPQDIDSVDIIEATGHAKVSANFVNKFNAKYRGKRYIT
                     SCCGKSRENFYFQSDASLVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNAA
                     LCSSAEIIYSRMDIGRHNALDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGC
                     GIILSRSAPTELAINMAEELNITTVGFIRGDRLNVYSGFERIT"
     gene            complement(7362..7838)
                     /locus_tag="U0280_001259"
     CDS             complement(7362..7838)
                     /locus_tag="U0280_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1641 domain-containing protein"
                     /protein_id="HEM2271213.1"
                     /translation="MAEPISTIRDTKKTPEELEHERLEQMKADIAEQDSGFVEIVETV
                     KLLQESGALEALNSAIKARGDITKTFLNEWRKEPMTNAINNMMISSKLLTDTKPEQTE
                     EMIANLKNAAKKAEESAKKDEIMGMLAMMKALKDPDINRALRYGVTFLKEVGQTLK"
     gene            complement(7838..10825)
                     /gene="fdhF"
                     /locus_tag="U0280_001260"
     CDS             complement(7838..10825)
                     /gene="fdhF"
                     /locus_tag="U0280_001260"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEM2271214.1"
                     /translation="MGAKVSVQINGVARDVVEGTRILDYLNAEGIQHPHICYSEQIGP
                     IQSCDTCMCEVDGELVRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVC
                     DNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQ
                     VQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFM
                     TGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEV
                     WTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWED
                     AIHLVATKLREIQAKYGNDSIGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQ
                     APASDGLTRTVGIGADSGTVEDIETAGLVIIVGASPADGHPVLASRIKRAQKTRGQKL
                     IVSDLRKHEMAERSDLFMHPKQGTDFVWLTAVAKYMIDQGWHDEAFMENRISNVADYL
                     SFLEPFTLEYAEKETGLSVETLKKVAQMVYEADGTAVCWGMGVTQNIAGSHTSSAIAN
                     LLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGV
                     SISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVF
                     LSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVAKAC
                     GKTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFN
                     FPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVE
                     VSHELAKERDLESGSLVRLSSPYGRIKLRAVVTERMKGNEVYVPMHSVSSETAVNLLT
                     SSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDY
                     QPISKVNCACGGNCGCGGKRRNH"
     misc_binding    11005..11253
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            11323..12165
                     /locus_tag="U0280_001261"
     CDS             11323..12165
                     /locus_tag="U0280_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HEM2271215.1"
                     /translation="MTKQLLVLQSDFGISDGAVSAMYGVINSVSLDLQIYDLTHQIPQ
                     FNIWEASYRLLQTVTYWPEDTIFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTH
                     IAHYGTIKEVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPSATP
                     DSIVSLSLSDSYLEGEQAFGTIDIIDRPFGNLWTNIRRTDFLQLGANYGDSIEVLIKH
                     HDRVVYKNFVTYSRSFADLRIGEALIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVT
                     LKKV"
     gene            complement(12215..13696)
                     /locus_tag="U0280_001262"
     CDS             complement(12215..13696)
                     /locus_tag="U0280_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM2271216.1"
                     /translation="MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATAL
                     PMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTII
                     ASVAGSFPVLLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAI
                     GPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIG
                     FGSLLYGFSSAGNDGWGDATVITMLIVGVVVIALFVWRQLVIDNPMLELHVFKYPVFS
                     LSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFD
                     KIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMN
                     ALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKA
                     QDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK"
     gene            complement(13797..14684)
                     /locus_tag="U0280_001263"
     CDS             complement(13797..14684)
                     /locus_tag="U0280_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2271217.1"
                     /translation="MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYF
                     TSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNFTECLKIIIHFYTENGEILNITF
                     SQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFAS
                     GSKNVDSGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAK
                     LRGALEELNVGIENADIDDSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHV
                     PASLTKEVNKLEACVNGLL"
     gene            complement(14837..14909)
                     /locus_tag="U0280_001264"
     tRNA            complement(14837..14909)
                     /locus_tag="U0280_001264"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14874..14876),aa:Thr,seq:ggt)
BASE COUNT         4326 a         3442 c         2571 g         4589 t
ORIGIN      
        1 acaagagtca tgtatccagc aaatataaaa aagtccacca aaatgaaatt agcaggtaaa
       61 tctactaaag aaattatacg agcgttaaac atcaaaaaac taacacaaca aaaattaggc
      121 taccaatctc ccattaattt caggaaacaa gcagcctaat ttaagtgatt tttattccat
      181 tctcattttt ttatgtcagt acattagtga aataatatct aatagttctt tttcttataa
      241 aatttcttct tgcataaata accctagccc gccgatatca tgatgctttg cgattttatc
      301 tgctttttct aaagctagcg gaatgccatt ctccattgct acaccaattt cggctaattc
      361 aatcataccg acatcatttt cattatcccc aaaagcaatt gttgaatcaa gattaatgta
      421 accattttcc gcaagataag tgagaccttt tgccttatca attccttcat tcataatatc
      481 aattaaattc gaggcagacg caagaacaga aagtggcaag ccttctaaag ctgctttgat
      541 ttctgctcgt ttttctaaat ctgattcaat tacgagtact tttagtggga attcaccttc
      601 ccgaagcacg ctgaatggat ccgtagttaa agtaattgga acttgttcat tttccggtaa
      661 agttttattt aattcattga aaaaggcgat tttgcctgta ttggttggtc cgagaattcg
      721 ctccgttgta taaatatgat aattaacgtc cagcggttca agcgtttcta ataccgtatg
      781 tatcaaatcc agttcaatat tacttttata taaaatctct ccagtagtaa aatcgcgtac
      841 taatccgcca ttacaagaaa tgactggcgt tttgatattg agctcgtgga taaatggtaa
      901 aattgctaaa tccagtcgcc ccgttgcaag gaaaagtttt tttccgtttt tttgccattc
      961 cattaaaact tctttgttga ggggatgaat ttgatcacct ttttttacta gtaatgttcc
     1021 gtccatatct gtaataactg tatcaatcgc tacatttgcc aatagttttc gcacccttct
     1081 aaatttccgt tattatgtac ctcgattata gacgagtttc gcatgattgt cacgccgata
     1141 tttggtatac taaatgggaa tggaggacga taattagtga agaaatattt tataacaatc
     1201 atgattttac tttttggcgc gttatttctc agtgcttgtc aaaaagatga cgaggttgaa
     1261 aattcttctc ctcctaaagt agacttaaaa aacgaaatac ccattatttt aattcatggg
     1321 agcggtggcg atacacattc tttagatgaa atggcagatc acttaatgaa tgaatacaaa
     1381 agttctaatg aagcaatgtc aatgtcaatt aactcaaaag gaaaaatcac ataccaaggc
     1441 aagctaacaa aagatgccaa acgtcccatt atcaaatttg gcttcgacca aaaccaagca
     1501 actccagatg attggtctaa atggttaaaa atcgcaatgg aagatttgaa gtcacgttac
     1561 ggtttcacac aaatggacgg agttggtcat tctaacggcg gcttggcttt aacttatttt
     1621 gcagaagact actctaatga caacgctgtc cctactctgc gcaaattagt tgctattggc
     1681 tctcctttta atgatttgga cccagacgat aatggcgaag atttagcttt taataaatta
     1741 ccatccaaca cccctcaact agattatttt attgacaagg agactaaaat tagtactgac
     1801 ctagaagtac tatccattgc tggagctctt agtgaagata atttaaccga tggtattgtc
     1861 ccaacgaata gttcactcgc ttccagactt ttcatgccta ataacgcaaa agtctatatg
     1921 gaagatttac aagttggtga aagtgctatt caccaaacat tgcatgaaac atctgaaagt
     1981 atcgaaaaga cacattggtt cttagagaaa tcgagccccg aaaaaaaaga aattaaatta
     2041 atttctaaat aggaggaata atatgctaca tatacaagca aaagtccaag ttaaacctga
     2101 tttagtagcg gaattcttgg tggaagtgaa tttagtaatc caaggctcgc tttcagaaac
     2161 cgaaaatcat ggctacgaat tggttcactc tgtagaaaac gcaaatattt tctatattct
     2221 agaaaagtgg actgatgaag cagcaattca gtttcataac gggacagagc attataaacg
     2281 tttcaaaaaa aatgtccccg cttttttagc aatgccgatt gaggtggatt tacttgcgcc
     2341 agttgagcga cgatagtatt tttttaacaa gaattttttt gcaactaaca tcattttcgt
     2401 cttagtaaag ataaacttac ctgtattagt atagccttct tttgtgcgga ttatttgttc
     2461 atacactatc tcctctactt caagtgattc tattgtttgc tcgccgtcca cattaaatgg
     2521 gttcccactt tagaaaataa gcaaaaagga ttggctcgca tacgcgagcc aatccttttt
     2581 taatccttca aatagccatc ttcaatccga attacgcggt caactaagtc taaaactcgt
     2641 tcatcatgcg taaccatgat ggcagcttta ttttttcgtt ttacttcatt cgcaatcatt
     2701 tggactactt tgtgaccacg gttcgcatct aagcttgcgg ttggttcgtc cgctaaaata
     2761 atatcggggt cgttcatcag tgctctagca atagcgacac gttgtttttc accacccgat
     2821 aaactttccg ggtaattgtt ttcgcgagca gttaaaccta attctttaag taattcatct
     2881 gctttttctt tcgcaccccg ccctttttca ccagatagtt ccgcaattac gagtaactga
     2941 tcacggacat ttaagtacgg gattaggttc gcaccttgga aaatgaatcc tactttgtcg
     3001 agccgcactt ttgttaattc tttgcttgta aggtcattta acacttttcc acctatagca
     3061 atttctcctt ctgttgggga taataaggcg cctgcgatag ataaaaatgt acttttcccg
     3121 gcgcctgaag gtccaacgat tgcaacgaat tctccttgcg ccacttctaa agatacattt
     3181 ttcaatactt cgatgacttg ctcgccatcc tgataatttt tagaaatatt tttcatcatt
     3241 aaagtcatta gtttgccctc ccaattgctt ctaacgcgtc tacttttgct acacgataga
     3301 gtgataacat cgatccaatg actgctacaa caaggaataa ggcagaacag ccgattgcaa
     3361 gtaccgggct aagtgtaaat ggcatgctcg ccggtaaaat tgctgcaaga ccgaatgtta
     3421 agccattacc aattaacaaa ctgacaactg ataggaaaac aacttgggta acgatacttc
     3481 ggcctaaata ggctgttcgt gcgccaactg cttttaaaat cccaaattgg ttgatttttt
     3541 gaatcgtaat gacgtaaaag aaagcagcta gaacaaatgc ggcgatgacg aacaaaaagg
     3601 caatcatcat cagtagcgat ccttgttctt ctgagtagcc agggatacct tgaagcactt
     3661 ctttactaga cgaaagttcc atggagccga gtgataggtt tttagctgtg ctttcagaaa
     3721 catctagcgc tacggcgtta tattctcctt ctgctgcttg gttcgtttga tgcactaatt
     3781 tccaagcatc ccagccgacg aatataaccg gcgaatggct aaatgtgtta tttttggtga
     3841 aggcggtaat cgtgaactct tctcctgttg cgctatcttt gagtttgctg cctaatttat
     3901 aaccagactc ttttaaagaa atatcggcta ctacttcttt tgttttctct ggctctgttc
     3961 cttctgtgat ggccggtttc atgaagcctg ttttatctat accgaaataa gtaatgtctg
     4021 tttttttatc tttgttgggt ggtgtgatcg tgcccatttg cacgcccagg ttggtgcttt
     4081 ctgatttttt cacttgcttc gctacgctgt ctgtttcgga cgcggttaaa ttggacctcg
     4141 ttaagcgatt atccgagtct ttttgtaaaa cataataagt tgctttattg gatgaaatgg
     4201 ctgccccatt gtcgtttgca agtccattcg caagtcccgt tacaaacaaa acaagccatg
     4261 cgattaacac cataattaat ccaattagaa tatagcgtaa ttttgcgtgt tttaattctc
     4321 ttaatgccaa aaacattccg ttcaactcct tctaagatct tatccttagt ttaaagaagt
     4381 tttgtaaacg gaatgtgaat cggattttac aaatttagtt ttttggtagt ttgactttga
     4441 atgtcgtgcc tttttcgggg ctactttgca cggttatttc gccgtgatgg agcgtgataa
     4501 ttttctggca aatggataat ccgaggccac tcgagccttc ttctcgggtt cggctttcgt
     4561 tagctttata aaaacggtca aaaatcttgg ccatatcctc cttacctatg ccgacaccgc
     4621 tatcttgaac ttctacaaaa acatacgtcg ctttttcata aaggtggact ttgatattcc
     4681 cgccctgtgg tgtgaactta atcgcattag ttaacaaatt ggaccacact tgataaagta
     4741 attcagcatc acccgtatag tttacatctg ctaagtctaa atttattgtt agttcttttt
     4801 cgcgccaact ccactcggtc atttggatta attgacgcca ctgctcgtct aagtgaactg
     4861 gctctttttt tcgcaactct gattcttggt caagtgaagc gagtgtgagt agttgtttgg
     4921 ttaaggaaga tagacgtgtt gtctcctctg ataacacggt taaatattcg gcttgttctt
     4981 tttcggttag tgttccagaa cctaaaagtc tcgcaaagcc ttgcatggat gtgagcggag
     5041 attgtagttc atgagaaaca ttggcgacaa attcttgacg ggaagcttca gattttttga
     5101 gttcactagc cattttcgta aacgagtctg ccaactgccc aatttcatcc ttacgccgaa
     5161 cttcaaaggc tacatcataa ttgcctttac gtattttttt cgtcgcattc gtcaacttca
     5221 cgacaggttt gacaatatat ctgccactaa taagaaccaa cagaatactg atgatggatg
     5281 tgaaaataag tatcatcgcg aaaaatattc gaagttcccc aaattgtttt tccgggtctt
     5341 ggcgtatgaa tagcgctagt tgtttaccat cagcttggac cgggacacca atggtatttc
     5401 gcacatcatt atcaaaaaag cctgtgatga aaatgcctgt atcaaacgaa tcaattccat
     5461 gatatgtctc tccgtccagt acttgcttga ttgtcttatc cggtaaatct tttttccgaa
     5521 aagcgccacc ataataagtg gatttttccg cgccatctgt caaatataat tcgtatccca
     5581 gttcgcccac attttccaag tactcgttta aagaaatcgt agcatttgac tcataaaatt
     5641 gttggacttc ctccgctatt ttggcagttt tttcgtcatt aaaaggtttt aattttattt
     5701 ggtaataaat gtttgcaaag aaaaagccga gcaaactact ggaaataatg acgacaagca
     5761 tcgtgacaac tattcgacta tataacgatt tcatgttgtc tcctccaatt tataaccaac
     5821 gccgcgcacc gtaacaattc gaataccatc cttttcttca tcaaaatggt cccgcaatcg
     5881 tttaatatgt acatccactg tacggtcact accatcataa tcacgttgcc aaatccgctc
     5941 aattaattct tctcgagtaa aaatccggcc aggatagctt gctagctgat ataaaagctc
     6001 aaattctttc acgggaatca ttcgttcttg gttgccaatt tttataccat agcttttttg
     6061 atcgatagta atatttccga tattaatttt gacttcgctc gcttgattag aacgccgtag
     6121 caacgcacga attcgaaaga ttagctcttc tggttcaaag ggttttgtga cataatcatc
     6181 tgttcccact tcaaaaccgc gtgatttatc cgccagcgca tctttggctg tcaacataat
     6241 aacagggata tcaggataac ttgtgcgcat ttttttgcaa agttcaaaac catccatgtt
     6301 gggcatcatc acatcaatta cagctaaatg aacttgctct gtttcaacta ttttttctgc
     6361 ttctacccca tcgcttgcct caagtacacg gaagccttct gcacgcaaat agtggcccac
     6421 aagtttaagt atatgccgat catcatctac tactaatatt tgtttcattt tcaccgctca
     6481 ccttactgtc ctattttact gcatcatatc aaacttacgt gattcgttca aatccagaat
     6541 agacatttaa cctatcacca cgaataaagc caacggttgt aatatttaat tcttcggcca
     6601 tattaatcgc cagttcggtt ggggcagaac gagacaaaat aattccgcaa cctagttttg
     6661 ctgttttaac gaggatttcc gaagaaatgc gcccactaaa aataattgcc ttatcttcag
     6721 tggatgttcc gtcttgcaag gcacggccat atattttatc taaggcatta tggcgaccta
     6781 tgtccatcct gctgtatata atttccgctg aactacatag agccgcatta tgcacacccc
     6841 cagtttgatg gaatgtagca gaattttgtt caaaattttc cattaagcgg aaaatcatgt
     6901 cggttgttag ttgtagactt ccattttgct tcacattgac gagtgaggcg tctgattgga
     6961 agtagaagtt ttcccgagac ttgccgcaac acgaggtaat gtagcgcttg ccgcgatact
     7021 tggcattgaa tttgttcaca aaattagcgc taaccttggc gtgtccagtc gcttcgatga
     7081 tatccacgga atcgatgtct tgaggacccc gaacgatgcc ttccgatgtc agaaagccca
     7141 caactaaatc ttccagatat tctggcgtgc agacgatggt cacgagttct tggtcgttaa
     7201 cgtagatagt tagcggatac tcggtcgcaa cacttgattc aatttcttga aaagtgcccg
     7261 cttcaaaacg acggattttt tggtgcgaaa caatatccat caaaaaccac tcctctctaa
     7321 actgaaacag cgacacatct tagtctcgct gtttcgtcta cttattttaa tgtttgccca
     7381 acttctttta aaaaggtcac accataccgg agtgcgcggt tgatatcggg gtctttcagc
     7441 gccttcatca tcgctaacat gcccatgatt tcgtcttttt tcgcgctttc ttctgctttt
     7501 ttcgcagcat ttttcaaatt agctatcatt tcctcggttt gctctggttt tgtatcagtc
     7561 aatagcttac ttgaaatcat catgttatta atcgcattcg tcatcggttc cttacgccat
     7621 tcattcagaa acgttttcgt aatatccccg cgcgctttaa tcgcactatt caaagcttca
     7681 agtgcccccg attcctgtag taactttacc gtttctacta tctctacaaa accagaatct
     7741 tgttcagcaa tatccgcttt catttgttct aaacgttcat gttccaattc ttccggggtc
     7801 ttttttgtat cacgaatcgt tgaaattggt tctgccatca gtgattcctc cttttcccac
     7861 cacacccgca gttaccacca caagcgcagt tcactttaga aatcggttga taatcttctc
     7921 tcgaccattt gcgcgctacc tcagccccat tttgcgggaa tcttttacga ttacgtggat
     7981 tgtggtctgg aagtgggttt ttccctgttt tttcaagtac agtgaggttc acttttgttt
     8041 gtttatatgc cggtgttttc gtccgaacat ctcccgcgct tgaagtcagt aagttgaccg
     8101 cggtttcgct actcacagaa tgcattggca catagacctc attccctttc atccgctcag
     8161 tcacaacggc acgaagcttg atgcggccat aaggcgaact tagacgaacg agcgaaccac
     8221 tttctaaatc gcgttctttg gctaattcat gtgatacctc tacaaacact tccggtaatt
     8281 tataatccaa ccctttcgac ttatctgtca aattcccctc atggaactgc tccaataaac
     8341 gcccattatt cagcgttaaa ttatattctt ctgggaaagt aatcggtgca atatacggta
     8401 acgtcgaaaa ttgcgctttg ccgtccggaa aattaaatcg ttcttcataa agtaacggca
     8461 tatccttccc atccgcgctc actggccata caaggctgtt aaatccttgc atccggtcat
     8521 aacgaacccc tgcaaaaaat ggtgctaaac tagcaatttc gtccataatc tcgctcggat
     8581 gatcataatt ccagtccgtt ttgccacacg ctttcgcaac ttcttgaata atccaccagt
     8641 ctggcttcga atctccaagc ggctctaaca cctcataaag tcgttgaaca cggcgctctg
     8701 tattggtaaa tgttccttct ttttcaagag aaggagctgc tgggaaaaca acatctgcaa
     8761 attgtgctgt ttttgataag aacacatctt gaacaacaaa gaaatcaagg ctcgcaagga
     8821 tttcttgcac atgatttgag ttagagtcca cccaggccat ttcctcacca ataacataca
     8881 tagaatgaag tgttcccgcc tcaatagcat caagcatttc attgtttttc agccctggtt
     8941 ctggtgaaat tgatacccca taagcttctt caaaacgagc acgaacctca tcatttccaa
     9001 gcggttgaat tccaggaaga acgttaggta gtgaccccat atcgcaagca ccttgcacat
     9061 tattatgccc tctaagcgga taagcgcccg caccgtgtct tccgaagttc ccagttacaa
     9121 gaagtaggtt agcgatagca gacgatgtat gtgatccagc aatattttgc gtaactccca
     9181 ttccccaaca aaccgctgtc ccgtctgctt cataaaccat ctgcgccact tttttcaatg
     9241 tttctactga tagtcctgtt tctttttccg catattccaa tgtaaatggt tctaaaaatg
     9301 atagataatc tgctacattg ctaatcctat tttccataaa ggcttcatcg tgccatcctt
     9361 gatcaatcat atatttcgca accgctgtta accaaacaaa atcggttcct tgttttggat
     9421 gcatgaataa atcagaacgc tctgccattt cgtgttttcg taaatcagaa acaatcagct
     9481 tttgaccgcg tgtcttctga gctcgcttga ttctgctagc aaggactgga tgaccatcgg
     9541 ctggtgatgc gccaacaata atgacaagtc cggccgtttc aatatcttcc actgtccccg
     9601 aatccgcgcc aatcccaact gtccgagtca gcccatccga agcaggcgcc tgacaataac
     9661 gtgaacaatt atcaatatta ttcgtttcaa aaacctgccg cgccaatttt tgcatcaaat
     9721 agttctcttc attggttgtt ttagaagaac taataaatcc aatagaatca tttccatatt
     9781 tagcctgaat ttctcgcagt ttggtcgcaa ctagatgaat cgcatcttcc cagctcgccg
     9841 gcacaaattc attaccctcg cgaatgagcg gcgtcgtaat ccgtttctca ctattgacaa
     9901 aatcccaacc aaatttccct ttcacacacg tagcaaattt gttcacagga ccttctccgg
     9961 ttggctcgac tttcaaaatt ttgcgatcct tcgtccacac ctcaaacgta caaccaaccc
    10021 cgcagaaagt acaaactgtc ttcgttttct tcgtccgcgt ttcccgcatc gctgcttcca
    10081 tttccgacac agcaaagacg gtttgataat tcggctcgac ttttttcacc atatcaatca
    10141 tcggttctag catatcttcg tctaagccag tcataaagcc agcttggcca agcattgatt
    10201 tttccatcaa cgcgttacaa ggacacaccg tcgcacacag cccacaagaa acacaggacg
    10261 ataaattcgc tggacgatca tcatcccaaa taacccttgg ctgactacgt tcccaatcaa
    10321 tcgaaagtgt ttcattcact tgtacttgct gacacgcctc cacacagcgc ccacaaagaa
    10381 tacattgatc cggatcataa cgataaaacg gatgcgaaaa atcattcaaa tagccttttt
    10441 cgcggtaagg acgttcttgt ttttccacac caagcagttc cgtcgtatta tgtactttgc
    10501 aattaccgtt attgttatca caaaccgtac aatacaataa atgattttcc aaaatcctgt
    10561 ccatcgcttc taattgcgca tctttcgcta attcagaatt agttttaatt tccatcccgt
    10621 ctgtcagatt cgtgctgcac gcccgcacaa gttccccatc aacctcgcac atacacgtat
    10681 cacaagattg aattggtcca atttgctcac tataacaaat atgcggatgc tgtattcctt
    10741 ctgcatttaa atagtccagt attcgcgttc cttccaccac atcccgcgcc acgccattaa
    10801 tttgcaccga tacttttgcg cccatcacat tacctcctat atagagaaag cgtttacaat
    10861 ttccgcttat attataacag ttcttactta aaaatcacag taatacggca attgataatc
    10921 gttctcaaac actgctacta tgcgatttct ctcacaaggc taacgaattc attgacactt
    10981 atccaacttt tctgtattct ttattacaaa gctacgacga gaaaagtacg acgtccgttt
    11041 tttccaaaag agagttccca ctgctgaaaa ggaacaaaaa acaacgtccg aaaatggcct
    11101 ctgagttttg tcgctgaaaa taagtaagca acaacgggtt tggtgtccgt tatcaagcac
    11161 cctaagtatt ttatgtaaat gcttatttga ggttttcagt gcaagctgga aataaattaa
    11221 ggtggtaccg cgtgaaattt tctcgccctt attccaagat atttttttgg ataagggcga
    11281 gttttatttt accctaaatt gctcgaaatg gaggatttca aaatgacaaa acaactactt
    11341 gttttacaat ctgattttgg tattagtgat ggtgcagtta gcgccatgta cggcgtgatt
    11401 aatagcgtta gcctagattt gcaaatatac gatttaacgc atcaaattcc tcaatttaat
    11461 atttgggaag catcgtatcg tttactccaa acggttactt attggcccga agataccatt
    11521 tttgtttcga ttgttgatcc tggagttggt tcgaagcgtc gaagtgtcgc cgttttaaca
    11581 gaagatggtc attatattat tacaccagac aacggaacct taacccatat cgcgcattac
    11641 ggaacaatta aagaagttcg actgatagat gaagaaaaaa atcgcctacc aaaatcaggt
    11701 gcatcccata catttcacgg tcgagatatt ttcgcttata ccgcggctag gctcgcagcc
    11761 ggggtgatta attttgaaga tatcggtcca tcagctaccc cagactccat tgtttctcta
    11821 agtctaagtg actcctactt agaaggcgag caagcttttg gcacaattga tattattgac
    11881 cgtccattcg gtaatctttg gacaaatatt cgccgaactg atttcttgca gctaggtgct
    11941 aactatggcg attccatcga agtcctcatc aaacaccacg accgagtagt ttataagaat
    12001 ttcgttactt atagccgctc atttgccgac ttacggattg gcgaagcgct catctacgtc
    12061 aattcactcg acaacctcgg actaggtatc aatcaagggt ccttcgtaga cgcttattca
    12121 gtcggcaccg gcaccagctg gaaagtcacc cttaaaaaag tataaaaaac agggtcaaac
    12181 atccaaattg gaagtttgac cctgtttcat ttttttattt cgtatattct ttgacgattg
    12241 gctcttgttt tttggttttc aggaataaac ttaagatcat cccaatagcc gcaaaaatcg
    12301 ctgcaaccat aaacgccgca cgcattccgt ccaaactagc atcttgcgct ttttgagcaa
    12361 aactagcagg atccgttgcc ataagcgctt tacctggcat attatctttc gttacattcg
    12421 ttagcactgt aataagtacc gccgtcccaa tcgaaccagc aatttgtcga atcgtattat
    12481 ttaccgccga accgtggtta atcaaatggt taggaagtgc attcataccc gctgtcgaaa
    12541 ctggcatcat cgccattgaa atcccgaaga acctcacagc ataaaataca acaatatacc
    12601 aaagcggcgt atccatcgtt aagaacataa atggaattgt accgatagtc aaaatggtaa
    12661 ccccggtaat cgtcaaccat ttcgccccaa ttttatcgaa aataataccc gtaattggac
    12721 tcattatccc cataataatc gcacccggaa gtaataacag acctgattga agcgccgact
    12781 ccccgcgaat tgtttgaata tataaaggca atacaatttc cgcaccaatc attgccatcg
    12841 ttacaatcga accaagaata acagacaatg aaaatactgg atatttaaac acatgtagtt
    12901 caagcattgg attatcaata actagttggc gccaaacaaa taatgcaata acaacgacac
    12961 caacaatcaa catcgtgata accgttgcat ctccccaacc atcattacct gctgaactaa
    13021 atccataaag gagtgaacca aaaccaattg aagacattac aatggaaaga aaatcgattt
    13081 ttgtatcagt taattttact acttttttca ttccaaagaa cgctagaatt atatcgataa
    13141 ccgcgattgg aattaaaata aggaataata cgcgccaatc atacgaatcc acaatccaac
    13201 cagacaaagt tggcccaatt gctggagcaa acgcaataac aagtcccatc agccccatcg
    13261 ctgccccacg tttttcacga gggaaaatca gcaagaagat tgtttgaagc aacggcatca
    13321 taatccccgc accagctgct tgaacgatac gaccagtaag tagtaccggg aaagaacccg
    13381 ccactgacgc aataatggta ccaattgtaa atactgtcat cgctgtaata aataaagttt
    13441 ttgaactaat tttttcaatt aaaagtgccg taatcggaat cataatccca tttgttagca
    13501 agaaagccgt cgtcaaccat tgccctgttg ctgctgtaat atgcaaatca tccataatca
    13561 tcggcagtgc cgtcgctagt aacgtctgat tcaagatcgc cacaaacgcc ccaataatca
    13621 ttgtaactac taataaactt ctactataag atttcccgtt aacatcaacg ggccgttcta
    13681 ctgctgtact attcaaaatt aatacccctt cccatgtgga aatttccaga tgaataatag
    13741 aagtataata aaaaaagacc aacaagtcaa caaaaagtga ctggtcagtc taattattat
    13801 aaaagcccgt tcacacaagc ttctaattta tttacctctt tggtcaaact tgctggtaca
    13861 tgttgtttaa gatacaacaa tgttccttga accatgaaat ctctaggcgc ctcattattg
    13921 ttaatctccc caacaagcgc gttcatggat tccttatact gccatttatc cgagtcatca
    13981 atatccgcat tttcaatccc gacatttaac tcctccagcg cgccccgcag tttagctagt
    14041 cttttctttc taatcatagt ttgatccggc accagatttt ctgtgtccgc ttccgtaaac
    14101 acaatctctc cgctctccaa aatatccttc acaagtgcat caagccttct caccacataa
    14161 ggaatagccc gctcaatcaa tcctgaatca acattcttgc taccactagc aaagacatac
    14221 attgccgcca tcccgctaag caacatcgta atatcattta tataaggctc cgtttccttc
    14281 ccataaacct ctaacaactg atttttaacc cattccatat tcttaagtcg cacattctgc
    14341 aagaacgcat taaaatcatc atcaatcatc gtctgagaaa acgtaatatt caagatctcc
    14401 ccattttccg tataaaaatg aataataatt ttcaagcact ccgtaaaatt atccttcttc
    14461 gtcccatcta gccccatcgt atactccaaa cgctgatgca atacagaata ctcctgctta
    14521 aaaatcacaa ttgccagttc ctctttcgaa gtaaaataat tataaaaagt ccctttagaa
    14581 atcccagctg catcaaccat atcttgtaca gacgtcttca aatacccttg tttttgaaac
    14641 acctctttag ccgacttaat aatccgctgc ttcttctcct tcaaaaaaac accccacccg
    14701 ttctgttatt atacccatag tataatcgat ttatactacc tattcaagat atccataata
    14761 aatatcatta ttcttttaaa caataaaaaa agcctcgcat actagcgaaa catacaaatt
    14821 atccatatat tatttaagcc acttgtcgga tttgaaccga cgaccccttc cttaccatgg
    14881 aagtgctcta ccaactgagc taaagcggca gcaaagcctt tcaaataa
//
LOCUS       DASDXX010000052        14845 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.052, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000052 DASDXX010000000
VERSION     DASDXX010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14845
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.052"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            42..1349
                     /locus_tag="U0280_001265"
     CDS             42..1349
                     /locus_tag="U0280_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2271218.1"
                     /translation="MKLEQKQIKNVRQATLLSIIPGLGQFYNKQNFKGIVFFALFALF
                     IIEFFAVGLNALIGLVTLGSVPGVDHSLFLMIEGTLQLIVTLLFIGFWFINIFDARRV
                     AMQWNLGETVNRSAIAIIKNMLDKGFPYLLTLPAYLVMTFVIIFPVLVTLFMAFTNYD
                     FYHIPPANLIDWVGFKNFFNIFFLSSYRDTFLSVFSWTLIWTICATSLQIVVGVFTAI
                     VANQSFIKGKRLFGVVFLLPWAVPAFITIMSFSNMFNDSIGAINSQVIPLLNHLPFVD
                     INAIAWKTDPFWTKVALISIQGWLGFPYIYVMVTGVLQAIPGELYEAARIDGASAIQR
                     FRKITLPMILFVTAPVFITQYTFNFNNFSIIYLFNEGGPGSVGAGAGSTDILISWIYK
                     LTTGTSPQYAVAAAVTLLISIIVITVSMIAFKKTNAFGNEEMM"
     gene            1350..2201
                     /locus_tag="U0280_001266"
     CDS             1350..2201
                     /locus_tag="U0280_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2271219.1"
                     /translation="MRDFMKDQRTTKFLTQFFTYLFLTVLTIIILYPILITASSAFKP
                     GNIAAFTLEWSDSWTLNNFTRLFNETLYLDWYKNTLIIAVVTMIMQVTIVTLAGYTYS
                     RYRFKGRKNSLIFFLIIQMVPTMAALTAFYVLAMLLGALDQYWFLTLIYIGGGIPMNT
                     WLMKGYFDTVPRDLDESAKLDGAGHFRIFAQIILPLVRPMIAVQALWAFMGPFGDFLL
                     AKFLLRTPENLTIAVGLQTFIANPQQQKVALFAAGAILAALPICLLFFFLQKNFVSGL
                     TAGGTKG"
     gene            2229..3062
                     /locus_tag="U0280_001267"
     CDS             2229..3062
                     /locus_tag="U0280_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HEM2271220.1"
                     /translation="MKKVPFIIQYVKSTLGPTAIFEGRKVLKFWQMVIVFIFLNALLL
                     LPVSAHFANQSSFDLPSLMPKMAALGTDQLATEVSALTLENGALTDKNAHIVEKTANG
                     VAGVNLTKAELSGAKNVINFKDQEMTLTDSSGYTFEVSYPKDATLSEITSGESLVDWV
                     SAQWYLENQAFVFLSMVLMIGSIIFVSSLMLTVFTTLFIWMTKRSSFSSIASFKESVN
                     LTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAAS
                     R"
     gene            3078..5339
                     /locus_tag="U0280_001268"
     CDS             3078..5339
                     /locus_tag="U0280_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEM2271221.1"
                     /translation="MAQKQLFEIEPWTLRTTKLDKENKRLQESLTSLGNGYMGMRGNF
                     EEGYSGDGHIGTYYAGVWFPDKTRVGWWKNGYPDYFGKVINGLNFIGIEVRLDGEKLD
                     LFVDEVSDFELVLDMEKGVLRRQFTVVKNNKTFRISAERFLSVATKELAVIRYQVEAK
                     SAAKVDLTSFLDGNVQNEDANYEEMFWQEVEKASSASRGSLVTKTIPNNFGTPRFTVS
                     AVMENTTNTANQTNQTKALYAENHFQFDLKENEVAQIEKRVVITTSRDYEEREILPAG
                     EKILQSLEAKTYDELLAAHVAGWRERWDKADVEIAGDDSAQQGIRFNIFQLFATYYGE
                     DARLNIGPKGFTGEKYGGATYWDTEAFALPMYLSLTDKSVSHNLLKYRHDQLDGAKIN
                     AQKIGLAGALYPMVTFTGVECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDDSYLKTD
                     GIEVLTEITRFWADRVHLSDRLDKYMIHGVTGPNEYDNNVSNNWYTNYIAAWTIRYTL
                     ENLDAEAKKRLGVTEYEIAKWEDIEHRMYYPFDEKWQIFVQHDTFLDKELRSTDTLKP
                     EDMPINQNWSWDKILRSCFIKQADVLQGLYLFYDDFDFDTKQRNFEFYEPLTVHESSL
                     SPAVHAVLASELGKYDKAVELYKRTARLDLDNINNDTEDGLHITSMAGSWLSIVQGFA
                     GMRVTDGELSFAPFLPDGWENYRFKINFRDRLLEVKVERNSVEITLLAGKAFEINLYG
                     EPQELHSTVNVTK"
     gene            5468..6763
                     /locus_tag="U0280_001269"
     CDS             5468..6763
                     /locus_tag="U0280_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HEM2271222.1"
                     /translation="MANLKVIENEATILASIPKHNVDYNARVMQSVSVDYERDMIYWT
                     QQYSGKKMTDAGAGESYNITRTDLKGNYIDQMWCLNGGHGTNIALDYNLESKKMHIWS
                     AYKINNKWEVVCYPYESNKILKGTESSIFISKVESGSYNRISGDLKNDMLVFHSGGDP
                     KTFNIRIVRASSVREGKLEVLYKVKATEANDAYVYQGCALDFPYLYTASGTGGVEEPK
                     QLTCVDIVTGKRVYQTTFKFNTKAMQTTESNFAEPENVCVYYKNNQKHIVVGYALGGA
                     GNRMNRAFDLVENNSENIETEIESLRNLIISRKRTEVIFDQSTKGDMTTNFKLRETLN
                     NFDIIQVVLESGGGYTTASRLVSPKLFEASKSFIFASSNIGDTSGNNVDMYEYAANFN
                     DDLTSFKNDRAVKIEVSNNGTVRGNITNMGIKKIYGIVL"
     gene            6918..7739
                     /gene="dacA"
                     /locus_tag="U0280_001270"
     CDS             6918..7739
                     /gene="dacA"
                     /locus_tag="U0280_001270"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="HEM2271223.1"
                     /translation="MDFSNMSILHYLANIVDILVVWFVIYKVIMLIRGTKAVQLLKGI
                     FIIIAVKLLSGFFGLQTVEWITDQMLTWGFLAIIIIFQPELRRALETLGRGNIFTRYG
                     SRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLI
                     NIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSIT
                     IVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVTAKKPSIFSKWKGGKSE"
     gene            7739..9097
                     /locus_tag="U0280_001271"
     CDS             7739..9097
                     /locus_tag="U0280_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbbR-like domain-containing protein"
                     /protein_id="HEM2271224.1"
                     /translation="MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDS
                     EVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIG
                     TQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPII
                     DPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQE
                     VEVTVPVEKVGKSVPVKIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIP
                     IDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNQTTSDSNNQDTDT
                     TDKNTDDSGDNDTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDG
                     IAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSK
                     ST"
     gene            9347..10699
                     /locus_tag="U0280_001272"
     CDS             9347..10699
                     /locus_tag="U0280_001272"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEM2271225.1"
                     /translation="MGKYFGTDGVRGVANSELTPELAFRLGRMGGYVLTRHVGEHPRV
                     LVARDTRISGEMLESALIAGLVSVGIEVMRLGVISTPGVAYLTKAQGASASVMISASH
                     NPVDDNGIKFFGSDGFKLSDDQEEEIEQLLDTAEDTLPRPSGEGLGTVSDYFEGKQKY
                     IQYLKQTIENDFNGYHIALDCANGATSGLATHLFADLDADISSMGASPNGLNINDGVG
                     STHPEALATFVLDKKADVGLAFDGDGDRVIAIDEIGQIVDGDKIMFICAKYLREQGLL
                     NNNTIVSTVMSNLGFYKGLKELEIEDVQTAVGDRYVVEAMREGNYNLGGEQSGHIIFL
                     DHNTTGDGLLSGIQLINVMKATGKKLSELAAEMKTFPQKLENIRVSDKNHVTDNPKVS
                     KVIGEVEAEMAGNGRVLVRPSGTEPLVRVMVEAATKEETDEYCERISAVVRSEMALND
                     "
     gene            complement(10734..11195)
                     /locus_tag="U0280_001273"
     CDS             complement(10734..11195)
                     /locus_tag="U0280_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271226.1"
                     /translation="MNWTIWDKSQPVPLTLLLDADPSEKQIATYFNKSHVLQLMQADT
                     IIGVVCLFPLNKNQLEIMNIVVSSEYRNQGIGKKLLEKAFDYATHKHFSKIIVKTGNS
                     SIDQLAFYQKNGFRMQHIIPNYFTENYPNQTIIENGIACLDQIILLKEIKS"
     gene            11256..12080
                     /locus_tag="U0280_001274"
     CDS             11256..12080
                     /locus_tag="U0280_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271227.1"
                     /translation="MPSKWRGICGSLLIALGITQLYSFISAVIGYFNAEENSFVFVWN
                     YWMLLFFGVGLFIIGFVFMRKESFRLASIIGVICFVLFQGFSVYYYQLRILSKLEYAQ
                     PFEWSGTLLCILGLLVLIALLIGPKFQAKEIQADQAWKTKWRYAAGVFSLLGAVTSVF
                     AAVTIFRQLHSDNIKEGYLFTTVLDGYFACFMAVIFLLVVIFSWRKVSYLLVGILMGA
                     AFILLTNYLSVTNWIDFAKENLSITFGSNEREVFGMQFLMGASAFLSSIFGYIAKK"
     gene            complement(12118..14058)
                     /locus_tag="U0280_001275"
     CDS             complement(12118..14058)
                     /locus_tag="U0280_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271228.1"
                     /translation="MTLFDLAKKNIRHNFVHYFLYFASMIFSIMIYFTFLVLSKDPSV
                     VARIDQSAKLSTAFSSSSVILLIFVAIFILYSNNFFTRKRKKEIGLYSLLGLRKKEIG
                     RMLFYENFIMGLGALIIGIIAGTLLSKLFVTILLNLINLDSIGGFAFSWAAVIQTSIV
                     FIIITLFTSFTGYRIIYRTTLLDLFHSESKREKSPKPSFILALLSILLIGLGYFIAGQ
                     PLDSKGSIWAQLGFSIGALVILASVIIGTALFITFFLPYLLTKLRNNKRIFYKGSNII
                     STSQLAFRISSNAKTLIIISILSATTLSAIGTISSVYYQANTSASTSAPSSFEYEIPK
                     DSETNNKIIKTAESDPDHPVEFKQKSTYYIVKAEGARPDFVEYDINEGFPVISESDYN
                     SLVKKEGTPEKTANLKENEAQMVLTITYDEDAQKEMIGEKFTLNSPDKPNIKIKSVVQ
                     NSPISTIPGLLVLPDSQVAKIAADSSIAAHGVESISVKDAKQAQALDKKMRAVIPKDT
                     NFVSYTKMYQEIITVTGVLLFIGMFIGFVFLAATGSIIYFKQLTEAYNDIGTFDILKK
                     IGLTRRDIRKVLAKQLLVVFLIPLIIGIAHSSFALLGLSHMLALDLTLPVVISTGVYT
                     LMYIVYYFVTLNSYTNIVFGKK"
     gene            complement(14045..14812)
                     /locus_tag="U0280_001276"
     CDS             complement(14045..14812)
                     /locus_tag="U0280_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271229.1"
                     /translation="METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSG
                     AGKSTLLNVLSTIDKPTSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLT
                     IRENIILPLALAKRPVKEMEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAII
                     TAPSLIFADEPTGALDSKSATNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIK
                     DGELYTEIYRGTKTRKEFFQKILDVLAKLGGDSDDVI"
BASE COUNT         4774 a         2436 c         3032 g         4603 t
ORIGIN      
        1 acttagctag tgaatctata tctagaattg agggtaacaa aatgaaacta gaacaaaaac
       61 aaattaaaaa tgttcgtcaa gcgactttgt tatcaatcat tccgggactt ggtcaatttt
      121 ataataagca aaattttaaa gggattgtct ttttcgcact atttgctttg tttatcatag
      181 aattttttgc agttgggctg aatgcactga ttggccttgt aacacttgga tctgtaccgg
      241 gtgtagacca ttccttattt ttaatgattg aaggtacttt acaattaatt gtgacattac
      301 tatttatagg cttttggttt ataaatattt tcgatgcaag acgcgtggct atgcagtgga
      361 acctaggtga aactgttaac cgttctgcga ttgctattat aaaaaatatg ctcgacaaag
      421 gtttcccgta cttacttaca ttacctgcat acttagtgat gacttttgtt attattttcc
      481 cagttcttgt tactcttttc atggcattta ccaactatga tttttaccat attccgccag
      541 cgaacttaat tgactgggtt ggatttaaga acttctttaa tattttcttc ctaagttcgt
      601 atcgtgacac gttcctaagc gtattttcgt ggacactcat ttggacaatc tgtgccactt
      661 ctttacaaat tgtcgttggt gtattcacgg cgattgttgc gaaccaaagc tttattaaag
      721 ggaaacgtct ttttggggta gttttcttac ttccttgggc ggtaccagca tttattacaa
      781 ttatgagttt ttccaatatg tttaacgaca gtattggcgc aatcaactcg caagtcattc
      841 cgcttctaaa ccatttgcca tttgttgata tcaatgcgat tgcttggaaa acagatcctt
      901 tctggacaaa agtggcgctg attagtattc aaggttggct tggttttccg tatatttacg
      961 ttatggttac tggggtgctt caagcaattc ctggtgaact atacgaagca gctagaattg
     1021 atggtgcaag tgcgattcaa cgtttccgta aaattacatt accgatgatt ttatttgtaa
     1081 ccgcgccggt atttattacg caatatacat ttaacttcaa caacttttcg ataatatact
     1141 tattcaatga aggtggtccc ggaagtgtcg gagcaggcgc aggatcaacc gatatcttaa
     1201 tttcatggat ttataaatta acaacaggta cttcgccaca atacgctgta gctgctgctg
     1261 tgacgcttct tatctctatt atcgttatta ctgtttcgat gattgccttt aagaagacga
     1321 atgcctttgg gaacgaggag atgatgtaaa tgagagactt tatgaaagat cagcggacaa
     1381 caaagttctt aacacagttt ttcacgtatt tgtttttaac cgtgctaacg attattattt
     1441 tgtatccgat tctaataaca gcatcttctg ccttcaaacc agggaatatc gcggcattta
     1501 cgcttgagtg gtcggatagt tggacgctga ataacttcac gagattgttt aatgaaacat
     1561 tatatcttga ttggtacaaa aatacactga ttatcgcggt tgtaacgatg attatgcaag
     1621 taacgattgt gacgcttgcg ggttatacgt atagccgtta ccgttttaaa ggtcgtaaaa
     1681 acagcttgat tttcttcctt attattcaaa tggtaccaac gatggcggcc ttaacagctt
     1741 tctacgtgtt agcgatgcta cttggcgcac ttgatcaata ttggttctta acattgattt
     1801 acatcggtgg tgggattccg atgaacacat ggctgatgaa agggtatttc gataccgtgc
     1861 cgcgtgatct agatgaatcc gccaaacttg atggcgcagg acatttccgc attttcgctc
     1921 aaatcatctt gccacttgtt agaccgatga ttgccgttca agctttatgg gcgtttatgg
     1981 gaccgtttgg ggacttcctc cttgcgaaat tccttcttag aacaccagaa aacttaacga
     2041 ttgcggtagg acttcaaacg ttcatcgcca acccacaaca acaaaaagta gccttattcg
     2101 cagcgggcgc cattttagcc gcgctaccaa tttgtttact gttcttcttc ttacaaaaga
     2161 attttgtttc tggcttaact gccggtggaa caaaaggata attgattttt aaaaaggctg
     2221 tgatatcaat gaaaaaagtt ccgtttatca ttcaatatgt aaaaagtaca ctcggtccaa
     2281 ccgctatttt tgagggtcgg aaagtactga aattctggca aatggtcatc gtatttattt
     2341 tcttaaatgc gttactgttg cttcctgttt cggcgcactt tgctaatcag tcaagctttg
     2401 atttaccaag tttaatgcca aaaatggcgg cgcttggcac ggatcaattg gcgacagaag
     2461 ttagtgcact gacgctcgaa aatggggcgt taaccgataa aaatgcgcac atcgtcgaaa
     2521 aaacagcgaa tggtgttgct ggtgtgaatt taacgaaagc agaacttagt ggagcgaaga
     2581 atgtaattaa tttcaaagac caagaaatga cgcttacgga ttcgagtggt tacacttttg
     2641 aagttagcta cccaaaagac gcgaccttaa gcgaaataac gtcaggcgag tcgctcgttg
     2701 attgggtgtc ggcgcagtgg tatttggaaa accaagcatt tgttttccta tcgatggtgc
     2761 tgatgattgg ttctatcatt ttcgttagct cactcatgtt aaccgtgttt acgacgcttt
     2821 tcatttggat gacaaaacgg agcagttttt caagcattgc ttcttttaaa gaatcagtaa
     2881 atttaacgct aaatgcactg ggaattccag tgattgcggc ttgtattatc ggctttatct
     2941 actttgatat tacgattatt atggctgttc agtcgctcgg aatggtgtta atgatagcat
     3001 ggacattttt aaagacaaga ttttataaga ctagtgaaaa aagtatggct gctagtcgct
     3061 aattaggagg ttttagtatg gcacagaagc aattatttga aatcgaacca tggacattac
     3121 ggacaaccaa actagataaa gaaaataaac gtttgcaaga aagcctaact tcactcggta
     3181 atggttacat ggggatgcgc gggaattttg aagaaggata ctccggcgac ggccatattg
     3241 gaacttatta tgcaggcgtg tggtttccag ataaaacaag agttggttgg tggaaaaatg
     3301 gctacccgga ttatttcgga aaagtcatta atggccttaa ttttatcgga attgaagtac
     3361 gtcttgacgg tgaaaaactc gatttatttg tagatgaagt aagcgatttt gaacttgttt
     3421 tagatatgga aaaaggcgtt ttgagacgtc aattcacagt agttaaaaat aataagacat
     3481 tccggatttc ggcggaacga ttcctaagtg ttgcaacgaa agaacttgcg gttattcgtt
     3541 atcaagtgga agcgaagagc gctgcaaaag tggatttaac gtccttttta gatggcaatg
     3601 tgcaaaacga agatgccaac tatgaagaaa tgttctggca agaagtcgaa aaagcttcat
     3661 cagcaagtcg cggttcactt gtcacaaaaa ctattccaaa caactttgga acaccgcgtt
     3721 tcaccgtttc agctgtgatg gaaaatacga ccaatacggc aaaccaaaca aatcaaacaa
     3781 aggcacttta cgccgaaaat cattttcaat tcgacctaaa agaaaatgaa gtagcgcaaa
     3841 tagaaaaacg tgtagtcatt acgacatctc gtgattatga ggaaagggaa attcttccag
     3901 caggagaaaa aatcttacaa agcttagaag caaaaacgta tgatgaatta ttagccgcgc
     3961 atgttgcggg ttggcgtgaa cgttgggata aagcggatgt cgagattgca ggcgacgatt
     4021 ccgcgcaaca aggtatccga tttaacattt tccaattatt tgctacttat tacggtgagg
     4081 acgcaagact aaacattggt cctaaaggct ttacaggcga aaaatatggc ggcgcgacat
     4141 actgggatac agaagctttt gcactaccaa tgtatttatc gttaacggat aaatctgtga
     4201 gtcacaattt acttaaatat cgccacgatc aattggatgg agcgaaaatc aacgcgcaga
     4261 aaattggcct agctggcgca ctgtatccaa tggttacttt taccggagtt gagtgtcata
     4321 atgaatggga aattacattt gaagaaattc accgcaatgg cgcgattgct tatgcgattt
     4381 acaattacac aaattacact ggcgatgatt cgtatttaaa aacagatgga atcgaagtat
     4441 tgactgaaat cactcgtttt tgggccgacc gcgttcattt atctgatcgc ttagataaat
     4501 acatgattca cggtgtaacg ggaccaaatg aatatgataa taacgtcagc aataactggt
     4561 atacaaacta tatcgccgct tggacgattc gttatacgct agaaaactta gatgcagaag
     4621 cgaaaaaacg tttaggtgtg accgagtacg aaatcgccaa atgggaagat attgagcatc
     4681 gcatgtatta tccttttgac gagaaatggc agatttttgt gcaacacgat acgttcttag
     4741 ataaagagtt acgttccacg gatacattaa aaccagaaga tatgccgatt aaccaaaatt
     4801 ggtcttggga taaaatttta cgttcttgtt tcattaaaca agcagatgtc cttcaaggtt
     4861 tatatttatt ctatgatgac tttgattttg atacaaaaca acgtaacttt gaattctatg
     4921 agccattaac agtacacgaa tctagcttat cgccagctgt tcacgcagtg ttagcttcag
     4981 aacttggtaa atatgataaa gcagtagaac tatacaaacg tacagcaaga ctagatcttg
     5041 ataacattaa caacgataca gaagatggac tgcacattac ctctatggca ggaagctggt
     5101 tatccatcgt tcaaggcttt gctggtatgc gagtaactga tggcgaatta agctttgcac
     5161 cattcttacc tgatggctgg gaaaattacc gtttcaaaat caacttccga gatcgtttgt
     5221 tagaagtgaa agtagaaaga aatagtgtgg aaataacact acttgcagga aaagcttttg
     5281 aaattaactt atatggagaa ccacaggagc ttcattcaac tgtaaatgta actaaatgaa
     5341 aaatgaaaaa ctcgtatcag atagcctgat gcgagttttt tgatgatact ttttcgatac
     5401 tttttgaaag ttaatttgtc ttatacttag tttatcagct gataataaat caaaagggga
     5461 tcggataatg gcaaatttga aagtaataga aaatgaagca actattctag cttctatacc
     5521 taaacataat gttgattaca atgctagagt aatgcaatct gtttctgttg actacgagcg
     5581 agatatgatt tactggacgc aacagtacag cggaaaaaaa atgactgatg ctggagctgg
     5641 ggagtcatat aacattacga ggacagattt gaaaggaaat tacattgatc aaatgtggtg
     5701 tttaaacggt gggcatggaa caaatattgc acttgattat aatttagaaa gtaaaaaaat
     5761 gcatatttgg tcggcatata aaattaacaa taaatgggaa gtggtttgtt acccttatga
     5821 aagtaataaa atcctaaagg gaaccgagtc cagtattttc atttcaaaag tagagagtgg
     5881 cagctataac cgaatttcag gagatttgaa aaacgatatg ttggtttttc attcaggtgg
     5941 agatcctaaa acgtttaata ttagaatcgt gcgtgcttcc tctgtaagag agggaaagct
     6001 tgaagtactt tataaagtaa aggcaactga agcaaatgat gcatatgttt accaagggtg
     6061 tgcgttagat tttccatatt tatatacagc ttctggtact ggtggcgttg aagaaccaaa
     6121 acaattaact tgcgtggata tagtaactgg aaaacgtgtg tatcaaacaa catttaagtt
     6181 caatacaaaa gcaatgcaaa ccacagaaag caattttgca gaaccggaaa atgtttgtgt
     6241 atattataaa aataaccaaa agcatattgt agtaggatat gctttgggag gagcagggaa
     6301 tcgtatgaat agagcatttg atcttgtaga aaataatagt gaaaacatag aaacagaaat
     6361 tgaaagttta agaaacctta ttataagtag aaaacgtaca gaagttattt ttgatcaaag
     6421 tactaaaggg gatatgacaa caaattttaa attacgtgaa acgttaaata attttgatat
     6481 tatccaagtt gtccttgaat ctggtggggg gtatacaact gcatctcgac tcgtatcgcc
     6541 aaaactattc gaggcatcta aatcatttat ttttgcttcg agtaatattg gtgatactag
     6601 tggaaataat gtagatatgt acgaatacgc tgctaatttt aatgatgact taacatcttt
     6661 taagaatgat cgtgcagtca aaatcgaagt ttcaaataac ggaacagtac ggggtaatat
     6721 tacgaatatg ggtattaaaa aaatctatgg tattgttttg taataaatta aaattaaaga
     6781 gcgctgaatg atttctttaa caaatctttc caatttttgg cgggacgatt gctttttcca
     6841 cctgcactct tatgctataa taaagaaagt gaaccatgtg atcataaatg gttttcaaga
     6901 ggcacggagg tgaagtgatg gatttttcca atatgtcgat attgcattat ctagcaaata
     6961 ttgtagatat tcttgtcgta tggtttgtaa tttataaagt gatcatgtta atccgaggta
     7021 caaaagcagt acaattatta aaaggcattt ttattatcat tgcagtcaaa ctattaagcg
     7081 gattttttgg tctccaaaca gtagaatgga ttacggatca gatgcttact tggggattcc
     7141 ttgcaattat aattatcttc caaccggaat tacgccgtgc tttagaaacg cttggacgag
     7201 gcaatatttt tactcgttat ggatcaagaa tagagcgtga acagcatcat ttaatcgagt
     7261 ctatcgaaaa gtctacccag tatatggcaa aacgtcgaat tggggcgctg atttcagtgg
     7321 cgcgcgatac aggcatggac gattatattg aaacagggat tccgttaaat gcaaaaattt
     7381 cttctcaatt attaattaat atttttattc cgaatacacc gcttcatgat ggagcagtta
     7441 ttattaaagg aaacgaaatt gcatcggcag caagttactt gccactttca gatagcccgt
     7501 tcttatccaa agaacttgga acgcgtcacc gggctgcact tgggattagt gaagtgacag
     7561 atagtattac gattgtagtt tctgaagaga ctggcggaat ttccctaact aaaggtggag
     7621 aacttttccg tgatgtgtca gaagaagagt tacataaaat tcttcttaaa gaactagtca
     7681 cagtaactgc aaagaaacct tctatctttt ctaaatggaa aggaggcaaa agcgaatgat
     7741 ggatcgaatt ttaaataaca aatggtcgat tcggattgta gccttactac tcgcagccat
     7801 cctttttaca tcagttaatg caaataataa taacgccacg actttttcaa cgacttcttc
     7861 tagtgattca gaagtcatcg agaatgtccc ggtcaaagta tattatgata aaacgaattt
     7921 atatatttcg ggtattccag aaaccgttac agtcacgctt tcaggccctc gtagcatcgt
     7981 tcagtctgcc aaagctcaac aagactttac cgtttatgca gatttgaaaa atgcttccat
     8041 tgggacccaa gaagtaaaac tacaagtgaa agatgtatct gaccgcctaa aagtaaaagt
     8101 gaatccagca acagtcaacg tcaatgtaca agaaaaagta acgaaaaaat tctctgttga
     8161 cgtagaattg agcaaatctg tcgttgcaga tggttatcaa gctggaacgc ccatcattga
     8221 tcctaaaaaa gtctctatta ctggtgcaaa agatactatc gaacaaattg cttatgtaaa
     8281 agcaacactc gaaagtgatg gcaaacataa atccgaattt accgataagg ctaccgtctc
     8341 tgtttttgat agcaatttga acaagctaga tgtcgaagta aatccgcaag aagtggaagt
     8401 gaccgtgcca gttgaaaaag tcggcaagtc agttccagtg aaaattaagc aagaaggcac
     8461 gccagaaagt gatattgaaa tttccagcat gacaccagat aagtcagaag tagttgtagt
     8521 tggtgacgat gcggtccttg aaaaaatcaa agaaattgaa attccaattg atgtttctaa
     8581 aatcaaagca gataccgtca aagaagtgac tgtcccggtt ccaactggag ccaaatcagt
     8641 ccaaccgacg acgatagagg tgaagattaa gaccgtaaaa aagtctgaag caaataacaa
     8701 tcaaacaact tcagatagta ataaccaaga cacagataca acggataaaa acaccgatga
     8761 ttcaggagat aacgatacaa aaatttctaa gtcattttct aatatgcaag tctacatgag
     8821 tggattgaaa aatactttcg atgcacaaat gataactcct gccaatggaa aagtatctgt
     8881 gacgataact ggagagaaga aaacagtaga cggaatagcg gcgaaagact tgagtgtgat
     8941 tgccaatttg agtaaaagca aagcaggaag ttacagtatt ccactagaat tgaatggctt
     9001 accggataat gttgcctatg ttattaatcc tagacaagct gatttcatta ttacggataa
     9061 agaggcatct attgaagtac cttccaaaag cacataacat aaggagtgtg gggcgctagt
     9121 ctcatactcc tcctttttgg caaagaactt tttatacata gaatagtgga aaagcaagca
     9181 ataccaacgt tttattgtag agggatgaaa ttttctctta aaaaaggtat aataacaaat
     9241 gtatggttga gattagcaaa gatagaacca gcatttgaca aagtaatgat gaaatgacaa
     9301 acaaaaatca tttagataat gaatgactta gaaggagagt aatgaaatgg gtaaatattt
     9361 tggtacggat ggagttagag gtgttgcaaa ctctgaatta acaccagaac ttgcattcag
     9421 attaggtaga atgggtgggt atgttttaac ccgtcacgta ggggaacatc cacgtgttct
     9481 tgtagctcgt gatacacgta tatctggaga aatgcttgaa tccgctttaa tcgcaggact
     9541 tgtttctgta gggattgaag taatgcgtct aggagttatc tccacaccag gtgtagctta
     9601 tttaacaaaa gcacaaggcg cttctgctag tgtaatgatc tccgccagcc ataatccagt
     9661 ggatgataac ggtattaaat tctttggttc tgacggcttt aaattgtcag atgatcagga
     9721 agaagaaatt gaacagcttc ttgatacagc agaagatacg ctacctcgac caagtggaga
     9781 aggtcttggg acagtgagcg attattttga aggcaaacaa aaatatattc aatacttgaa
     9841 acaaacaatc gaaaatgact ttaatggata tcacattgca cttgattgtg cgaatggcgc
     9901 aacttcaggt cttgcaacgc atttatttgc agatttagat gcggatatta gttcgatggg
     9961 agcgtctcca aacggtttaa atatcaatga tggcgtcgga tctacacatc cagaagcatt
    10021 agctaccttt gttttagata aaaaagcaga tgttggttta gcttttgatg gcgatggcga
    10081 ccgtgttatt gcaatagacg aaattggtca aattgtcgat ggagataaaa ttatgtttat
    10141 ctgcgcgaaa tatttacgtg aacaaggctt attaaataac aacacaattg tatcaacagt
    10201 tatgagtaat ctaggcttct ataaaggttt gaaagagctt gagattgaag atgtacaaac
    10261 tgcagtgggt gaccgttatg tagtagaagc tatgcgtgaa ggtaattata atcttggcgg
    10321 agaacaatct ggtcatatta ttttcttaga tcataataca actggtgatg gacttctttc
    10381 aggaatccaa ttaatcaacg tgatgaaagc aactgggaaa aaattatctg agcttgcggc
    10441 tgaaatgaaa acattcccgc aaaaactaga aaacatccgt gtaagtgata aaaaccatgt
    10501 aacagataat ccgaaagtaa gtaaagtaat cggtgaagta gaagctgaaa tggctggtaa
    10561 tggtcgagtt cttgttcgcc catccggtac agaaccatta gtaagagtga tggtagaagc
    10621 tgctacgaaa gaagaaacag acgaatattg tgaacgtatt tcagcggttg ttcgttcaga
    10681 aatggcactt aacgattaaa acaacaaaca aaaaatcctg atgataaact tcatcaggat
    10741 tttatttctt ttaatagaat gatttgatct aagcaagcaa tgccgttttc gataattgtt
    10801 tgattaggat aattttcagt aaaataattt gggataatat gctgcatccg aaaaccattt
    10861 ttttggtaaa aggcaagttg gtcaatacta gaatttccag ttttaacgat aatttttgaa
    10921 aagtgtttat gagttgcata atcaaaagct ttttcgagta attttttgcc aataccttgg
    10981 tttctgtatt ctgaagaaac aacaatattc attatttcga gttggttctt atttagtgga
    11041 aataaacaaa caacgccgat gattgtatca gcttgcatta attgcaacac gtgagatttg
    11101 ttgaagtatg tcgcaatttg tttttcacta ggatcggcat ctaacaaaag agtgagtggg
    11161 actggttggc ttttgtccca gatggtccag ttcattttta tcacctcact cttagggtaa
    11221 catggcaagg cataaatagg aaggaagtgg gcgaattgcc tagtaaatgg agaggaatat
    11281 gcggtagttt gttaatcgct cttggtatta cgcaactata cagttttatt agtgcggtta
    11341 ttggttattt taatgcagaa gaaaatagtt ttgtttttgt atggaattat tggatgctat
    11401 tattttttgg tgtaggactt tttattattg gttttgtttt tatgagaaaa gaaagttttc
    11461 gccttgcaag tattattggc gttatctgtt tcgttttatt ccaagggttt tcggtgtatt
    11521 attatcagct ccgaattctt tcaaaattag agtatgcaca gccatttgaa tggtcgggaa
    11581 ctttattatg tattttggga cttttagtat taatcgcatt acttattgga ccaaaatttc
    11641 aagcaaaaga aatacaagca gatcaagctt ggaaaacgaa atggcgttat gcagcaggtg
    11701 ttttctcact ccttggagca gtgacatcgg tttttgctgc agtaactatt tttagacaat
    11761 tacattcgga taatattaaa gaaggttatt tatttacaac ggtattagat ggttactttg
    11821 catgctttat ggctgttata tttcttctag tggtaatctt ttcctggcgt aaagtttcgt
    11881 atcttttagt tggtatttta atgggtgcag cctttatttt actgacaaat tatttatctg
    11941 tgacaaattg gattgatttt gccaaagaaa atttatctat tacatttggt agtaatgaac
    12001 gagaagtgtt tggtatgcag ttcctcatgg gagcttctgc ttttctatct agtatctttg
    12061 gttatattgc gaaaaaataa tggaatccct ctaattaaga ttagagggat tcttttttta
    12121 ttttttgccg aaaacgatat ttgtgtagct atttaaggta acaaaatagt aaacaatata
    12181 cattaatgta taaactccag tagaaataac aactggcaaa gttaaatcaa gtgctaacat
    12241 atgtgaaagt ccgagaagtg caaaactact atgtgcaata ccaatgatta gcggaattaa
    12301 gaatacaact agtaactgtt tagcaaggac tttacgaatg tctctacgtg taagaccaat
    12361 ttttttcaag atatcaaaag taccaatatc gttatacgct tctgttagct gtttgaagta
    12421 gatgatgctt cctgttgctg ctaagaacac aaaaccgatg aacattccga taaagagaag
    12481 aacaccagtg actgtaataa tctcttggta catcttcgta taagaaacga aattcgtatc
    12541 ttttggaata acagcacgca tcttcttatc taatgcttgt gcttgttttg catctttaac
    12601 tgaaatggat tcgacaccgt gagcagcaat tgaagaatct gctgctatct tagctacttg
    12661 gctgtctgga agtacgagca agcctggaat agtacttatt ggtgagtttt gaacgacaga
    12721 tttaatctta atatttggtt tatccggcga attaagtgtg aatttctcac caatcatttc
    12781 tttttgagca tcttcgtcat aagtaatagt tagtaccatt tgtgcttcgt tttctttgag
    12841 attagctgtt ttttcaggtg ttccttcttt ttttacgaga gaattataat cagattcgga
    12901 aataactgga aaaccctcat ttatatcata ttctacaaag tctggacgag ctccctctgc
    12961 tttaacgata tagtaagtgc ttttttgttt aaactctact ggatgatcag ggtcactttc
    13021 cgcagtttta attattttat tgtttgtttc actatcttta ggtatttcat attcaaagct
    13081 agatggagcg gacgtgcttg cggacgtatt tgcttgataa tacacactgc ttattgtccc
    13141 tatagcagaa agggttgttg cacttaaaat agaaataata atcaaggttt tcgcattgga
    13201 tgatattcta aaggctaatt gcgaggtcga gataatgtta ctacctttat agaaaatacg
    13261 tttgttattt ctaagttttg taagtaaata cggtaagaaa aaggtaatga aaagtgcagt
    13321 accaatgatt accgaagcta aaataactaa tgccccaata gaaaagccaa gttgtgccca
    13381 aatagaacct ttagaatcaa gtggttgtcc agcgataaaa tagcctaaac caattaataa
    13441 aatcgaaagt aaggctaaga tgaatgaagg ttttggactt ttttcgcgtt ttgattctga
    13501 gtggaacaaa tcaagtaaag tggtgcggta aataatacgg taaccagtaa atgatgtaaa
    13561 taacgtgatg ataataaaga caatactcgt ttgtattact gctgcccaag aaaaggcaaa
    13621 accaccaata ctatcaagat taattaagtt aagtaaaatg gttacaaaaa gcttggaaag
    13681 taatgtaccg gcaataatac cgatgattaa tgcgccaagt cccataataa aattttcata
    13741 aaacaacatg cgaccaattt cttttttacg aaggccgagt aaagagtaaa gtccaatttc
    13801 tttttttctt tttcgggtaa agaaattatt ggaataaagg ataaaaatcg ctacaaaaat
    13861 aagtagaatg actgaggagc ttgaaaatgc tgtcgataat ttagccgatt ggtcaattct
    13921 agctacaaca gatggatctt tcgaaagaac aaggaatgta aaataaatca taatgctgaa
    13981 aatcatcgat gcaaaatata aaaagtaatg gacaaaatta tgtcgaatat ttttcttagc
    14041 taaatcaaat aacgtcatct gagtcgcccc ccagttttgc aaggacgtct agaatttttt
    14101 ggaagaactc cttacgtgtt ttagttccac gatagatttc tgtgtataat tctccgtctt
    14161 taataaataa aattcgtttg caaaaacttg ctgcaaacgc atcatgtgtt accatcatga
    14221 ttgttgattt atcttgttca tttaagtcac gtaagctttc aagtaagttg gttgctgatt
    14281 tagaatcaag cgcaccggtt ggctcatcgg caaaaattaa acttggtgca gtaataattg
    14341 ctcttgaagc tgcagtacgt tgcttttgac cacctgaaat ctcgcttgga tatttatcaa
    14401 ggatttctgt aatgccgaat ttttcactga taattgctaa tttttcttcc atttctttta
    14461 ctgggcgttt cgctagtgcg aggggaagga taatattttc acggatagtt aatgtgtcta
    14521 gtaagttgta atcttggaat ataaaaccta gtttgtcacg tcggaaagtg gacatttgtt
    14581 gttcattcat gttttcgagt tcttgtccgg aaatcacaat ctgaccagaa gtcggtttat
    14641 caatagtaga taagacattt agtaacgtgg atttaccagc cccagatggt cccataattc
    14701 cagtaaattc accttcttta atatcaatac tgatattttc tagtgcagtg tagacatttc
    14761 ctttgctacc gtatattttt ctcacatttt ttgcttgtaa aactgtctcc attattttct
    14821 ctccttaaaa actagattcg gttag
//
LOCUS       DASDXX010000053        14826 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.053, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000053 DASDXX010000000
VERSION     DASDXX010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14826
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.053"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(109..888)
                     /locus_tag="U0280_001277"
     CDS             complement(109..888)
                     /locus_tag="U0280_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen family hydrolase"
                     /protein_id="HEM2271230.1"
                     /translation="MWKLALCQTDVVFKYPDANYARIEKAIVEAAKNGADIAVLPEMW
                     NTGYALNELAGVADLNGERTKEFLATLSEKHQIAIIGGSVSISEGTKFSNTMYAFDKY
                     GGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFRLDGVSCAGFICYDIRFPEWIRKHTSE
                     GSEVIFVSAQWPAERVTQWEQLLIARAIENQAFVVAVNRVGDDPNNHFNGHSLVIDPL
                     GNIVAHGGEDEGNIYAEIDLKLVAETRGIIPVFTDRRPELY"
     gene            complement(978..1640)
                     /locus_tag="U0280_001278"
     CDS             complement(978..1640)
                     /locus_tag="U0280_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271231.1"
                     /translation="MSLFFEEWGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLT
                     RKGGQSENLVAYSILNWVINILRSLPFIILLFLMIPVTRFVVGTTIGIQGVIMPLVVF
                     TAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGL
                     IGATAMAGLVGAGGLGTIAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLK
                     KD"
     gene            complement(1637..2653)
                     /locus_tag="U0280_001279"
     CDS             complement(1637..2653)
                     /locus_tag="U0280_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM2271232.1"
                     /translation="MIELHQVSKSFNVNGKTVEAVKNVSITVEKGEIFGVVGYSGAGK
                     STLVRCINLLERPDAGQVVIDGKNLSTLSSKELRVARRKIGMIFQGYNLLKTATVYDN
                     IAKPLKLEGVPKDEIETRVNKYLSIVGLEDKRNNYPSQLSGGQKQRVAIARALAHEPE
                     ILLSDEATSALDPETTEAILQLLLKINAELGITIFLITHELDVIQRICDRVAVMENGH
                     LVEQGTVLDIFTKAKHSTTKRFVGSEASFDIPQDLLEKYVATGKLVSLHFIGDEADEP
                     ALALVSRKFDVLPSILAGGIDHLKNGTLGKLLVHLKGDEVEYSKAISYLKESGVVVEE
                     VELL"
     gene            complement(2668..3489)
                     /locus_tag="U0280_001280"
     CDS             complement(2668..3489)
                     /locus_tag="U0280_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2271233.1"
                     /translation="MRKLTKGLGILLASSLVLGLAACGGGSDDKALSTEKITIGTTAG
                     PHQQIAEEVQKLAKKDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDK
                     GYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDKIAVPNDPSNEYRGLKLFEDAGVIKL
                     KDGVEEKATKKDIAENPLDLEIVELEASQIPAQLDEVAAAAINTNFAMGAGLSINKDA
                     IYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHSAEVKAFIEKEFNGSVVPAF"
     regulatory      complement(3598..3717)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            3870..5051
                     /locus_tag="U0280_001281"
     CDS             3870..5051
                     /locus_tag="U0280_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2271234.1"
                     /translation="MKISKRLQNLPDQFFSSLVEKVGKKVAEGHDVINLGQGNPDQPT
                     PKHIVEAMKTASEKPLNHKYSLFRGKHELKQAAADFYAREYNVTIDPNTEVAILFGTK
                     TGLVELPMCLMDPGDTMLLPDPGYPDYLSGVVLGEVQFEKMPLIAANNFLPDFTKIPE
                     DIAEKAELMYLNYPNNPTGAVATADFFEETVAFAKNHNIVVAHDFAYGGIGFDGKKPI
                     SFLEANGAKEVGIELYTLSKTYNMAGWRVGFAVGNSEVIEAINLIQDHMYVSLFPGIQ
                     DAAIEALTGDQTCVGELTARYESRRDAFISACKKIGWEAVAPAGSFFAWMPVPENFTS
                     SEFADYLLEEVSVAVADGSGFGEFGEGYVRVGLLMDEERLEEAVTRVSKLHLFDKVTQ
                     Q"
     gene            5264..5977
                     /locus_tag="U0280_001282"
     CDS             5264..5977
                     /locus_tag="U0280_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2271235.1"
                     /translation="MAEKKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE
                     EVQPDLILLDIMLPGRDGIEVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVT
                     KPFSNRELIARVKANLRRHSQVSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIEL
                     THREFELLHYLAKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHP
                     AWLVTRRGVGYYLRNPEQE"
     gene            6162..7994
                     /gene="walK"
                     /locus_tag="U0280_001283"
     CDS             6162..7994
                     /gene="walK"
                     /locus_tag="U0280_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HEM2271236.1"
                     /translation="MHKMRFFQSVQFKLVIMYLLLIIVAMQVIGAYFVRELEGQLEKN
                     FQDSITNSITLLDYNAREEIIKNSDNSVKLQNDIRELLVDYSRASSNLIEVRIVDDKG
                     KILGTSNLNNQGIVGQKSNDPLVKRTLSLGTTSEDKIYKDESNKNNRVWVNVSSIKNK
                     GQVIGAIYLVADIESVYKQVDDITNIFITGTLIAMIITAVLGILLSRTITKPIIEMKR
                     QAYAMARGNYSRKVKVYGVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMT
                     DGVIATDRRGKVILINTPAEKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLT
                     MDRSTLDKPYVLRANFSVIQRETGFNNGVIAVLHDITDQEKVDQERRDFVSNVSHELR
                     TPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQL
                     EKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNAN
                     KYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTG
                     LGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLPYSDLPEDDWE"
     gene            7991..9313
                     /locus_tag="U0280_001284"
     CDS             7991..9313
                     /locus_tag="U0280_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2271237.1"
                     /translation="MMKKTGFRSFILTILVVLSIVLSYFIWKGQPDYEAINVKEVEKT
                     TIDKTMTTSQVFKPYKLAVNANENNYQSLDADLLNELMAQGKAFSFSEVVLASKKSSE
                     DYEKLIHKNGTIEIIFPNNIPFSIFAQIFQVEGEGLESAFFNRIVFDINKTDTGLHSV
                     YFTNDDQENIYQSSLQNKDIDKIEKIVKKNESKLTQNDKLISNKRNLFLSSEKTKLNR
                     KKYIIDSLEINLFTSALFQDSGTVKSEGNTYTDGSSVIEMDTDNKVLEYVNPSQERTN
                     PEDLSSVKRAGLIQDSFNFVNDHAGWTGDGAYYFTGYAAESATTNFSLFIDNLQVYNE
                     NGMADISVTEGLEAVYKYMRPFFRLDTDVPGEKKEVTLPSSYSVYSALAQNPNVKAEE
                     IEDIVPGYHMTRSESSGMNRLVTLEPTWLYKYHDKWFIFQPDAEKAGE"
     gene            9316..10155
                     /locus_tag="U0280_001285"
     CDS             9316..10155
                     /locus_tag="U0280_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system regulatory protein YycI"
                     /protein_id="HEM2271238.1"
                     /translation="MDWRKTQMIFIVTLLILNVFLAVIFFNKQLSDDPDTLGNETLEE
                     RLKADNISHPDLSTKPTSGSIFTTERAAFTTKDVSDLTGQAITLKDNNKQIYSVLQTP
                     VKAGKKGSNPEFQKFMESDVYRGESYQFWNYDKDARTLTFNQLINNNMVLFDEAGQIT
                     FYLDQDDRVISYEQTWMSKQDDLKDKTNLMSATDALEAVYQHGELKQDSDVVSATFGY
                     YTTVQLPSGNVYFPVWCFEVKHSGETNYVLVNAKDEQVINQSDNKSTTEPGTELSSRQ
                     KTK"
     gene            10275..11105
                     /locus_tag="U0280_001286"
     CDS             10275..11105
                     /locus_tag="U0280_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2271239.1"
                     /translation="MFANKILTEKDTDQIRFSILASGSSGNATLVETGDQKILIDCGL
                     SGKKMEGLFAQVGRDMNDLDAILITHEHSDHIKGLGVLARKYKLPIYANAKTWKAMDN
                     MIGEVSSDQKFQFDMETVKTFGSMQVESFGVSHDAIEPMFYIFHKGNKKFVMITDTGY
                     VSDRMKGHIAGADAYLFESNHDVEMLRMGRYPWNVKRRILGDEGHVSNEDAAIAMSEV
                     ITDQTKRIYLGHLSKDNNMKELARMSVTQTLMAEGIDVGGKLEIFDTDPDNATSIFTI
                     "
     gene            11203..12705
                     /gene="htrA"
                     /locus_tag="U0280_001287"
     CDS             11203..12705
                     /gene="htrA"
                     /locus_tag="U0280_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEM2271240.1"
                     /translation="MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGV
                     TPEGEKFAGATEDAAEASSTNAFFEEASNKEPEPARPAPGPRRAGTTGGGAVPPNRVN
                     NGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKAT
                     KVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKAN
                     GKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFG
                     DSDSLKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTD
                     AAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVE
                     RPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVEL
                     NGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKLEAAKTTT"
     gene            13393..13872
                     /gene="rlmH"
                     /locus_tag="U0280_001288"
     CDS             13393..13872
                     /gene="rlmH"
                     /locus_tag="U0280_001288"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEM2271241.1"
                     /translation="MNIQIVTVGKLKEKYLVQGIAEYLKRLSAFAKVTIVEVPDEKAP
                     EVLSDAEMKQVKDKEGARILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSK
                     VTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK"
     gene            complement(13904..14767)
                     /locus_tag="U0280_001289"
     CDS             complement(13904..14767)
                     /locus_tag="U0280_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2271242.1"
                     /translation="MDIENMKAFNKVAELKSISAAANELHHLQSNMSNKIKNIEKQFQ
                     TQLFFRHSNGVEPTKEGEKIYQQFKKMILLWEETIDIINNEEETISIGITQSSLPMEF
                     NTIIKEFYQQFPNKKLSIVSGSTSELIPKIANRELTIAYVAELEKENLFQDSQIISQT
                     LSWDKLVFAGNTAGKSVQKILAEERLYVFSKQCYSYRALAALINDINIPNVSISEINI
                     PETLVEICNNELGIGIIPESIALNYHFLNYETLPTEYASLRKTLIYHADHTISNGEKW
                     LIEKSKPAFKS"
BASE COUNT         4865 a         2595 c         3012 g         4354 t
ORIGIN      
        1 aaaaaattaa tctatattaa ttataccaaa ttgccacttt tttgccgata atatgaacat
       61 ttaatgagaa aaagatgcaa aaaatattat tttgcatctt ttagctattt agtaaagctc
      121 aggtcgtcta tctgtgaaaa ctggaatgat gcctcgcgtt tcagcaacaa gttttaagtc
      181 aatctcagca taaatatttc cttcgtcttc accgccatga gcgacaatat ttccaagtgg
      241 atcaatcaca agtgagtgcc cattgaaatg attattagga tcatcgccaa ctcgattgac
      301 tgcaacgaca aaagcttgat tttcaatagc gcgtgcaata agtagttgct cccactgagt
      361 aacacgttcg gctggccact gagctgaaac aaaaatgact tccgatcctt ctgaagtgtg
      421 tttgcgaatc cattctggaa atctaatatc atagcaaatg aaaccagcgc aagaaacacc
      481 gtccagtcga aatagatttt tatcattccc agcctctaaa tagagatgct cattcataag
      541 ctgaaataag tgaaccttct tatatgaaga aagtagtcca ccatatttgt cgaaagcata
      601 cattgtatta gaaaatttgg ttccttccga aatagagacc gagccaccga taatagcaat
      661 ttggtgtttt tcagaaagtg ttgctaaaaa ttctttcgtt ctctccccat ttaaatcagc
      721 aaccccagct aattcattta aagcataacc tgtattccac atttctggta aaactgcgat
      781 atctgcccca ttttttgcag cttcaactat agctttttca atccgtgcat agtttgcatc
      841 aggatattta aaaactacat cagtttgaca taatgccaac ttccacatgt tcttcgctcc
      901 ctttttcttt taaaaataac acaagcttgg tgacgagtcc atattggaac acttcgcacc
      961 aagctctaag tagtgaatta atctttttta agacgtctag ataagaaatt accgaatgat
     1021 tgtagtgctt gaaccatgat aattaaaata ataatggttg tatacatgac agttggttca
     1081 aaacgttgga aaccatattg gtaagcaatt gttccgagtc caccagcacc aacaagtcca
     1141 gccattgcag tcgcgccgat tagaccgatt gtagcgatag ttaagccaag aacgatacca
     1201 gaccgagctt cgcgaataac gacactccaa atgattttcg gtgtagaaat acccattgct
     1261 tgataggctt ccacaactcc gcgatccact tccaaaaggg cggattccat taaacgggca
     1321 atataaggtg ccgtaaatac gacaagtggc ataataaccc cttgaatccc aatagtagtc
     1381 ccaacaacaa accgtgttac aggaatcatt aagaataaca aaataataaa cggtaatgaa
     1441 cgtaaaatat taataaccca gtttagaata ctgtaggcaa ccaggttttc tgattgacca
     1501 cctttacgcg ttaatgttaa aaatacgcca agtggtaaac caatcgcaag tgaaatcacg
     1561 agtgtaatcc cagtcatcgt aagcgtttct agaaatcctt gccaaagtat cgggccccat
     1621 tcttcaaaaa acaaactcat agtaactcga cctcctcaac aacgactcca gattctttca
     1681 aataagaaat agctttactg tattcaactt cgtccccttt taaatgaacg agcagttttc
     1741 caagtgttcc gtttttcaaa tgatcaattc ccccagctaa aatgcttgga agaacgtcga
     1801 atttacgtga tacaagagcg agcgcaggct catccgcttc gtctccaata aaatgaagag
     1861 aaaccaattt cccagtcgca acatattttt caagcaaatc ttgcgggata tcgaaactag
     1921 cttccgatcc aacaaagcgc ttggttgtcg agtgttttgc ttttgtaaaa atatcaagaa
     1981 ccgtaccttg ttccactaaa tgaccatttt ccattacagc aacccggtca caaatacgtt
     2041 gaatgacatc aagttcatgt gtaattaaga aaatcgtaat gccgagttcc gcattaattt
     2101 taagtaacag ttgcaaaatt gcttctgttg tttcagggtc caaggcgctt gttgcttcat
     2161 cgcttaagag aatttctggc tcatgcgcaa gagcacgagc aatcgccaca cgctgttttt
     2221 gaccgccaga aagttggctt ggatagttgt ttcgtttatc ctctaagcca acaattgaca
     2281 agtatttatt tacgcgcgtc tcgatttcgt cttttggaac gccttctaat tttaatggtt
     2341 tggcaatgtt atcatagaca gttgcggttt ttagtaggtt atatccttgg aaaatcatgc
     2401 cgattttccg gcgagcgaca cgaagttctt tgcttgatag ggtagataag ttcttcccat
     2461 caatcacaac ttggccggca tctggacgtt caagcaggtt gatgcaacga acaagggtac
     2521 ttttcccggc gccactgtaa ccaacgacac cgaaaatttc tcctttttct actgtaatag
     2581 aaacattttt gacggcttct acggtttttc catttacgtt aaatgatttt gaaacttgat
     2641 gtaattcgat caaaataaaa caactcccta gaatgcaggt actacagacc cattaaattc
     2701 tttttcaata aatgctttta cttcagctga atggtaatat ttttctaatg tttttacgac
     2761 ttcatcgtct ttgttggcac tacgaacaac gaaaacgttt ggatatggat tgtcttttgt
     2821 aggttcgtgg taaatggcat ctttattaat agaaagtcca gcgcccattg caaagttagt
     2881 attgatagct gcggctgcaa cttcatctaa ttgtgcaggt atttgagaag cttcaagttc
     2941 aacgatttca aggtcaagcg ggttttcagc aatgtctttt ttcgttgctt tttcttccac
     3001 accatctttt aatttaataa cgccagcatc ttcaaacagt tttaaaccac ggtattcgtt
     3061 acttggatca tttggaacgg caattttgtc gcctttttta agatttttca agtctttaat
     3121 atcgttggag taaatgccca ttgggaatgc tactgtttta aaagcaacgt ctaatttgta
     3181 gcctttatct ttcttttgtt gctctaaaaa tggaattgtt tggtagttat tcgcatccaa
     3241 atcaccatca tttaaagctg tatttggcgt gttataatca tcaaatgttt tgattttgat
     3301 ttcaagaccg tcttttttcg ctaatttttg aacttcttca gcgatttgtt ggtgaggtcc
     3361 tgctgttgtt ccaattgtaa ttttttctgt gcttaaggct ttgtcgtcac tgcctcctcc
     3421 acatgctgct aatcctaaaa caagacttga tgcaagtaaa attcctaacc cttttgttaa
     3481 ttttctcatc ttttttcctc cctagtatgt tgtgtgatta tccagattta ttcatgaaaa
     3541 caataaaaaa cttctctatt tagaatagag aagtggaaag tcgaacatat ccagctcctc
     3601 ttatctacca aaatggaata caccattttg ctggaattag caccttcact ttacgcttaa
     3661 ataaagttag gttgccgggc ttcatcgggc cagtccctct gccgctctcg ataagagaaa
     3721 atattttaga aaaacctgtt agttaaaaat atacgcacat taccttaatt tgtcaatgct
     3781 tttttaagtt ttaaaaaaat catactggac aaatacttca gaaaacttta ctattttaat
     3841 caatgaaact tgaaaaggac gggtgtaaaa tgaaaatttc caaacgcttg caaaatttac
     3901 cagatcagtt tttctctagc cttgttgaaa aagttggaaa aaaggtggca gaagggcatg
     3961 atgtcattaa tttaggacaa ggaaacccag accagccaac acccaaacat attgtggaag
     4021 cgatgaaaac agcttcagaa aaaccactta accacaaata ttctttattt cgaggaaaac
     4081 acgaactaaa acaagccgct gcggattttt acgcgcgtga atataatgta acaattgatc
     4141 caaacacgga agtagctatt ttgtttggga caaaaacagg cttagtggag ctgccgatgt
     4201 gtttgatgga tccaggtgat acgatgcttt tacctgatcc gggctatcct gattatttgt
     4261 caggagtagt gttaggtgaa gttcaatttg aaaaaatgcc gcttattgcc gcaaataatt
     4321 ttttaccaga tttcactaaa attccagaag acatagctga aaaagctgaa ttaatgtatt
     4381 taaattatcc taataatcca actggcgctg tggctacggc agatttcttt gaagaaacag
     4441 tcgcttttgc caagaatcat aatatcgttg ttgcgcacga tttcgcatat ggaggtattg
     4501 gctttgacgg taaaaaacca attagttttt tagaagcaaa cggtgcaaaa gaagttggaa
     4561 ttgaacttta tacactttcg aaaacatata atatggctgg ctggcgcgtt ggttttgcag
     4621 ttgggaacag cgaagttatt gaagctatta atcttattca agatcatatg tatgtaagtc
     4681 tttttccagg gattcaagat gctgcaatcg aagctttaac aggagatcag acttgtgtgg
     4741 gtgaattaac cgctcgttat gaaagtcgca gggatgcctt tatttctgct tgtaagaaaa
     4801 ttggttggga ggcagttgcg ccggcgggtt cgttctttgc ttggatgcca gtcccggaaa
     4861 attttacaag tagcgaattt gctgattatc tgctagaaga ggtcagtgtt gccgttgcgg
     4921 atggtagtgg ctttggggag tttggtgaag gttacgtccg cgtaggtctt ttaatggatg
     4981 aagagcgctt ggaagaagca gtaacgcgag tttccaaatt gcatttgttc gataaagtta
     5041 cacagcagta gccaatttat ccaattttaa gagaaaatcg cttgtaataa ttcagataat
     5101 taatgggatg tgttataatt ggttagtaag tctattctta gcatgttgtt ttatgaaggc
     5161 aggccagaat ttaaaatgtt tagtgagatt tttatgcatt aaataaaaag tatctgtccc
     5221 ggttaaagcc ggcgaaatcc aggaatgaga ggactgtaaa aaaatggcag aaaagaaaat
     5281 tcttgtagta gatgacgaaa aaccgattgc ggatatagtt aagtttaatc taaataaaga
     5341 aggctttgat gtatattgcg cctatgatgg cgatgaagcg ttagaacttg tagaagaagt
     5401 tcagccagat ttaattttac tggatattat gcttccaggt cgtgatggta ttgaggtatg
     5461 tcgtgaagta cgtaaaaaat atgatatgcc aataattatg gtaacagcga aagattcaga
     5521 gattgacaaa gttatcggac tagaacttgg tgcagatgac tacgtaacga aaccatttag
     5581 taatcgcgag ttaattgctc gagtgaaagc caatttgcgc cgtcacagcc aagtcagctc
     5641 aaatgcagcc gaggaagaag aaaacagcga actagaaatt ggttctttga ttattcatcc
     5701 ggatgcatat gtggcttcta aacgtggaga aacaatcgaa ctaacacatc gtgaattcga
     5761 attactacat tatttagcaa aacatatggg acaagtcatg acacgtgaac atttacttca
     5821 aaccgtttgg ggctatgact acttcggcga tgttcgtacg gtggatgtta ccgttcgtcg
     5881 tttacgtgag aaaattgaag ataacccaag tcacccagca tggttagtaa ctagacgcgg
     5941 agttggctat tatttacgca atccagaaca agaataaata acaagaagtg gtcgccgaag
     6001 tgaaaaaaat tcggtgacca ctttttttgg gtattttcgc ttacttaggt actattttta
     6061 taaataaatc gacccaatta acaggaaaaa caatacgtct acaccataac atatggtata
     6121 ctaatttaaa tatattaccc cgaataggag tagaaagact tatgcataaa atgagatttt
     6181 ttcagtccgt acaatttaag ttagttatta tgtatttgct actaattatc gttgcaatgc
     6241 aagtaatcgg cgcgtatttt gtacgtgagc tggaagggca actggagaaa aattttcaag
     6301 attctattac gaatagtatt acgcttttag attataacgc tagagaagaa attattaaaa
     6361 atagcgacaa ctccgtcaag ttacaaaatg atattagaga actcttagtc gattattctc
     6421 gcgcaagtag caatttaatc gaagtaagaa ttgtagatga caaaggaaaa attctcggca
     6481 catctaattt aaataaccaa ggaattgttg gacaaaaaag caacgatcca cttgtaaaac
     6541 gaacattatc acttggaacg acttctgagg acaaaatcta taaagacgaa tcgaataaaa
     6601 ataaccgcgt ttgggtgaac gtatcctcca tcaaaaataa aggccaagtg ataggggcta
     6661 tttatcttgt cgccgatatc gaaagtgtct ataaacaagt tgatgatatt acaaacattt
     6721 tcatcacagg gactttgatt gcgatgatta ttacagccgt ccttggaatt ctattatcaa
     6781 gaaccattac taaaccaatt atcgaaatga aacgtcaagc ttatgcgatg gctcgcggca
     6841 actatagccg caaagttaaa gtatacggtg tcgatgaaat tggtgaactg gctgattctt
     6901 ttaatacact aacaaaacga gtccaagaag cccaagcaat gactgaaggg gagcgacgca
     6961 agttatcctc tgtactcgca tatatgactg atggcgtaat tgcaacagac cgtcgcggga
     7021 aagtaattct cattaatacg ccagcagaaa aaatgcttcg cgtgaaacat gaaagtgcga
     7081 atgggcgctc gattattgat gttttagaca tcggagacac gtaccaattt gaagatttaa
     7141 tggaagtaga tgggtcacta acaatggacc gtagtactct cgacaaaccg tacgtgcttc
     7201 gtgccaattt ctcggtcatt caaagggaaa caggctttaa taatggggtt atcgcggtac
     7261 ttcacgatat taccgatcaa gaaaaagtcg accaagaacg tcgcgatttc gtatccaatg
     7321 tatcacatga actaagaacc ccacttacca gtatgcatag ctatttagaa gcattaagcg
     7381 acggcgcgtg ggaagataaa gaaatcgctc cacgtttcct tgaagtaacg caaaatgaga
     7441 ccgaacgaat gattcgtctc gttaacgatc tcctcaaact ttccagaatg gatggcggca
     7501 gagaacaact cgaaaaaagc ttcgtgaact ttacggattt ctttaaccat attattgacc
     7561 gttttgaaat gatgaaaaaa gaaacaatca tgttcaaacg ccatattcca agagagccag
     7621 tcatcatcga aattgatgaa gataaagtaa tgcaagtgct tgataatatt atttctaacg
     7681 ccaataaata ttcaccggat ggtggccgta tttccttcta tctgaaaaaa tttgaagatg
     7741 aaattgaagt aagcattgcc gatgaaggtt taggcgtacc agacgaggat ttagcaaatg
     7801 tgttcgaccg attcttccgt gtagacaaag cacgctcgcg agaaatggga ggaacagggt
     7861 taggactcgc tattgctcga gaagttatcg aagcacatgg tggtcgaatt tgggccgaac
     7921 gtaataaaac caaaggaacc ataattaaat ttaccctgcc atacagtgac ttaccggagg
     7981 atgattggga atgatgaaaa aaacaggatt tcgctcattt atactaacca ttttagtcgt
     8041 actcagtatt gtcctaagct actttatttg gaagggacaa cctgattacg aagcaattaa
     8101 cgtaaaagaa gtggaaaaaa caaccattga caagacaatg acaacatcgc aagtattcaa
     8161 accatacaag ctggctgtaa atgcaaatga aaataattac caaagtttag atgctgattt
     8221 attaaacgaa ctaatggcac aaggtaaagc ctttagtttc tcggaagtag tattagctag
     8281 taaaaaaagt agtgaagact atgagaaatt aatccataaa aacggaacta tcgagattat
     8341 tttccccaat aatattccgt tctctatctt tgctcaaatt tttcaagtag aaggggaagg
     8401 gcttgagtca gcgttcttta atcgaattgt ttttgatatt aacaaaacgg atactgggct
     8461 acattcggtt tatttcacaa atgacgatca agaaaatatt taccaaagtt ctttgcaaaa
     8521 taaagacatt gataaaatcg aaaaaattgt taaaaagaac gaaagcaagc tgactcaaaa
     8581 tgataagcta atttcaaaca aacgcaatct ttttctaagc tctgaaaaaa cgaaactaaa
     8641 tcgcaaaaaa tatatcatcg attcgcttga aattaattta ttcacgtccg cactattcca
     8701 agattctggt actgttaaaa gtgaaggaaa cacatacaca gatggttcaa gtgtcattga
     8761 aatggataca gataataaag tattagagta tgtaaatcca tcacaagaac gtactaatcc
     8821 agaagatctc agtagtgtca aacgagctgg acttattcaa gatagtttta actttgtgaa
     8881 cgaccatgct ggctggactg gcgacggcgc ttactatttc acaggttatg ccgcggaaag
     8941 tgcgacgact aatttcagtt tattcatcga taatttacaa gtatacaatg agaatggcat
     9001 ggcggatatt tctgtaacag aaggacttga agctgtttat aaatacatga gaccattttt
     9061 ccgcttagat acagatgttc ccggagagaa aaaagaagtt acgttaccat cctcttattc
     9121 tgtctatagt gctcttgccc aaaatcctaa cgtcaaagca gaagaaattg aagatattgt
     9181 tcctggctat catatgacta gaagcgaatc ttcgggcatg aatcgtcttg taacattaga
     9241 gccgacgtgg ttgtataagt atcatgacaa atggttcatc ttccaaccag acgcagaaaa
     9301 ggcgggtgaa taaaaatgga ttggcgtaaa acacaaatga tttttattgt gactctcctc
     9361 attcttaatg tttttttagc ggtaatattt ttcaacaagc agttatcaga tgacccagat
     9421 acactcggaa atgaaacgct agaagaacga ttaaaagcag ataatatctc tcatcctgat
     9481 ttatcgacca aacctactag cggctctatt ttcactacag agcgagcagc ttttacaaca
     9541 aaagatgtga gcgatcttac agggcaagcc attacgctta aagataacaa taaacaaatc
     9601 tattctgtct tacaaactcc cgtaaaagct ggcaaaaaag gtagtaaccc agaatttcaa
     9661 aaatttatgg aatcagatgt ttatcgcggg gaatcctatc aattttggaa ttatgacaaa
     9721 gatgctcgga ccctcacttt taatcaatta attaataata atatggtttt atttgatgaa
     9781 gcgggccaaa ttacttttta tttagatcaa gatgaccgag tgatctcata cgagcaaact
     9841 tggatgtcta agcaagatga tttaaaagat aaaaccaatt taatgtccgc aacagatgca
     9901 ttagaagcgg tttatcagca cggagaattg aagcaagaca gcgacgtggt ttctgcaaca
     9961 tttggctatt acacgacagt acagctaccc tctggaaatg tatacttccc cgtttggtgt
    10021 tttgaagtaa aacattctgg tgaaactaat tatgtcctcg taaatgccaa agacgaacaa
    10081 gtaattaatc aatcagacaa caaatcaacc accgagccag gtacagaatt atcgagccgt
    10141 cagaaaacca aataaaaaat gagtcaacct aattatcatg aaaaattagg ttggcttttt
    10201 caaacgatag ggcatgcaat tttgccgaat tagcgttaca atgaaagata tataagcctt
    10261 tagggggata aaaaatgttc gcaaataaaa ttttaacgga aaaagatacg gatcaaatcc
    10321 gatttagtat attagccagt ggaagctcag ggaatgccac acttgtcgaa acaggagacc
    10381 aaaaaattct gatcgattgt ggtttgagtg gaaagaaaat ggaaggatta ttcgcgcaag
    10441 ttggtcgtga tatgaacgat ttagacgcga ttctaattac tcatgaacat tcagatcata
    10501 ttaaaggtct tggtgtgctt gctcggaaat acaaactccc tatttatgct aacgcgaaaa
    10561 cgtggaaagc aatggataat atgattggcg aagtgtcttc agatcaaaaa ttccaatttg
    10621 atatggaaac agtaaaaacc tttggtagca tgcaagtgga atcctttgga gtctctcatg
    10681 atgcaattga gccgatgttt tacatatttc ataaagggaa taaaaaattt gtaatgataa
    10741 cggacactgg ttatgtaagc gaccgaatga aaggtcatat tgcgggggct gatgcttatc
    10801 tttttgaaag taatcatgat gtagaaatgc ttcgaatggg acgctatccg tggaatgtaa
    10861 aacgcagaat tcttggtgac gagggacacg tgagcaatga ggacgctgca atagcaatga
    10921 gcgaagtcat taccgatcaa acaaaacgaa tttatttggg acaccttagt aaagacaaca
    10981 atatgaaaga acttgcgaga atgagcgtaa cacaaacact tatggcagaa ggtattgatg
    11041 ttgggggtaa actagaaatt tttgacacag accctgataa tgctacatct atctttacta
    11101 tttaagtttc accgtttttt taaagctttt tcatcgtttt ttcatatttg gggtttatta
    11161 tggaagtata taaatgcgaa atttgcagag aggaaggaag acatggacga gaaagaaaag
    11221 aatttaaatg aaaacagcga gaatgaaagc acgccaaaaa gagaggtcga ggatacttta
    11281 catacaccgg agagcgcgca accagtccaa gaaactccta ttgtagaagg cgtgacccca
    11341 gaaggggaga aatttgccgg agcgacagaa gatgcagccg aggcgagttc tacaaatgca
    11401 ttttttgaag aagcaagtaa taaagaacca gaacctgcta gaccggctcc agggccaaga
    11461 cgcgctggta caactggtgg cggggcagtt ccacctaata gagtgaataa tggcggaagt
    11521 ggtaacggga atggtgaacc accgaaacgc ggcaaacact ttatcggtta ctttttaaca
    11581 gcacttattg gtgttattat cggaggactt attattttct ttgtcgcttg ggataatggt
    11641 gacaatgcag atacaacttc aaactcaaat aataaagcta ccaaagtaga aaaagtttca
    11701 gtagatacaa catcagatgt aacaaaagca gtagacaaag tacaagatgc ggtagtgagt
    11761 gttctaaatt accaatcatc ttcatccctt gatggaacaa cgacttctga acaagaagct
    11821 tcctcaggat ctggtgttat ttataaaaag gcaaatggaa aagcctacat cgtaacaaat
    11881 aatcacgttg ttgctgatgc aaataaatta gaagtaactt ttacaaacgg taaaaaatcc
    11941 gaagcaaaat tactagggac agacgaatgg aacgatttag ctgttcttga aattgatgat
    12001 aaaaatgtta ctacagtcgc tgcattcggc gattcagatt cattaaaact tggtgaacca
    12061 gcaattgcaa ttggtagccc gctaggaaca gaattttccg gttctgtaac acaaggtatt
    12121 atttctggtc taaaccgtgc agtaccagtt gatacaaatg gcgacggaac agaagactgg
    12181 gaagcagatg ttatccaaac agatgcagca attaaccctg gtaacagtgg tggagcttta
    12241 attaatattg aaggccaagt aattggtatt aactcaatga aaatttcgat ggaaaatgta
    12301 gaaggtatta gctttgcaat tccaagtaac acagtagaac caatcatcga acaactagaa
    12361 acaaaaggcg aagtagaacg tccatctcta ggtgtatcct tgcgtgatgt tgatactatt
    12421 ccagaaacac aacaaaaaaa tatcttgaaa ttacctgata gcgtagatta cggcgcaatg
    12481 gtacaacaag tagtatccgg ttctgcagca gacaaagcag gcttgaaaca atacgatgtt
    12541 attgttgaac taaacggcca aaaagtaaca aactccatga cattacgcaa aattctatac
    12601 ggtaacgacg tgaaaattgg cgataaagtc aaagtgaaat actatcgtga cggtaaagaa
    12661 aaatccacag atattaaatt agaagcagca aaaacaacta catgataaca aaaagccatt
    12721 ctcttgaaaa agagggtggc tttttttctg tggaaaactt gtggatagcg atttttttcg
    12781 gatatagata tggtagagaa caagaattct cctactaaat atagaactgg tttgtggata
    12841 tgtggataac ttctgtggat aacctgtgtg taagcagtga atatcttgtg gaaaagaaca
    12901 attttgataa tttaatcaat aaacacagat ttatttttga aaaaaacaca ttttttgcga
    12961 aaatataggt caaaaaagaa aaatgtggat agaaagccat ttatccacat ttttactttt
    13021 tataagctgg atatgtgaca aggaaaataa ctttacatag agatttgatt cgcgagattg
    13081 attgtaggag aaggggttcc actgtttggt ggagtttgag ttttgaatag ttaggcgaca
    13141 atttcacctg tggataagct gtggatagtg aaatttggct atcatatata ttgtggagaa
    13201 tatacgttcg gacacaaaat agagaagggg cttgtggata tgtggataat ttttggggat
    13261 aacttgtgta taagggcggg ataacctgtg gaataacttt ttatggaaag ctgctcttat
    13321 tttattttga ctagtgcaat gagggatttt tgatgtatga taaaagtatt aaaaaagata
    13381 agggtggcat aaatgaatat tcaaattgta acggtcggga aattaaaaga aaaatattta
    13441 gtgcaaggaa tcgccgaata tttaaaacga cttagcgcct ttgcgaaagt gacgatcgtt
    13501 gaagttccgg atgagaaagc tccggaagtg ctgagtgatg ccgaaatgaa gcaagtaaaa
    13561 gataaagagg gtgcgcggat tttagcaaag attccggacg atgcccatgt tattgcgctg
    13621 gcgattgatg ggaaaatgaa gtcgagtgaa gaatttgcgg cggatttgga taagctggcg
    13681 acttatggta agagtaaggt gacgtttgtg attggtggat cgctgggact tagtgaggcg
    13741 gtgttgaagc ggagtaatga gcggatttcg tttgggaggt taacgctgcc acaccagttg
    13801 atgagattgg tgctggtgga gcaggtttac cgggcgtttc gaattgttcg gggggagcct
    13861 tatcataaat agctagctgg ttgaaagggt tgtaatcaac aacttaactt ttgaatgctg
    13921 gtttactttt ttcgataagc catttttcac catttgaaat tgtatgatct gcatgataaa
    13981 ttaatgtttt tcgaagtgat gcgtattctg tgggtaatgt ttcatagttt agaaaatgat
    14041 agtttagtgc gatgctttca ggaataattc caataccaag ttcattattg cagatttcaa
    14101 caagtgtttc gggaatattg atctctgata tggaaacatt tgggatatta atatcgttaa
    14161 tgagagcagc cagggcgcgg tatgaataac attgtttgct gaagacgtat aatcgttctt
    14221 ccgctaatat tttttggact gattttccag ctgtgttgcc tgcgaaaact agtttatccc
    14281 atgagagcgt ttgtgagatg atttggctat cttgaaataa attttctttt tcgagttcag
    14341 cgacatatgc gatggttagt tctctgttag ctatttttgg tattaattca cttgtacttc
    14401 cgctaacgat agataatttt ttatttggaa actgttgata gaactcttta atgattgtgt
    14461 taaattccat aggcaaagaa gattgcgtaa taccgattga gatcgtttct tcttcattat
    14521 tgataatatc aatcgtttcc tcccataata aaatcatttt tttgaattgt tgatagattt
    14581 tttcgccctc tttagttggt tccacaccat tcgagtgccg gaagaaaagt tgagtttgga
    14641 actgtttttc gatatttttt attttattgg acatattaga ctgtaaatga tgcagttcat
    14701 tcgctgctgc agaaatactc tttagttcag ctactttatt aaatgctttc atgttttcaa
    14761 tatccataat tttctccttt tggtatcaaa aataatgata ccggcatatg attttcgcat
    14821 ttcaaa
//
LOCUS       DASDXX010000054        14667 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.054, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000054 DASDXX010000000
VERSION     DASDXX010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14667
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.054"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(186..899)
                     /locus_tag="U0280_001290"
     CDS             complement(186..899)
                     /locus_tag="U0280_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271243.1"
                     /translation="MVKYELIAADIREKINNGTYPPESILPDQVSLCKAYDCSRMTIK
                     KAFDVLALEGLVYRQRGAGTFVMKNALANKQDASLRDYDGLTKMMGDNRISSKIIAFD
                     IAFPDEKTQEQLLIKADQPVYKLIRLRLLDGAPYVLEHTTMPADLVPGLTKEILHHSI
                     YAYLQDSLGLVLSGAFRKINADKPSEYDQEYLACGEHDPVLEVEQVVYLKDGRPVEYS
                     RSRHRYDTRSFIMVDHREK"
     gene            complement(980..2266)
                     /gene="celB"
                     /locus_tag="U0280_001291"
     CDS             complement(980..2266)
                     /gene="celB"
                     /locus_tag="U0280_001291"
                     /EC_number="2.7.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIC"
                     /protein_id="HEM2271244.1"
                     /translation="MNKFMELLGEKLMPLAAKLGENRYLTTLRDAFMLAFPLTMFGSI
                     AVVLMNLPFWSDETKAVLQLYLGNAQSATMSIMTVFVVFGIGYSLSKYYKVEAIYGGA
                     VALASFLILTPFFFNSPDGELITGALSLDRLGAKGMFIGMITGFIAAELYRFFVQRDW
                     TIKMPAGVPPAVAKSFAALIPAILTLSIFLAINVMVQFFFHTNLHDVVYTVIQKPLVG
                     LGSGIVPTLIALFFVQVLWFFGLHGQIIVNSVMDPIWNTLMLENLDAYKAGLPLPHII
                     TKPFMEVFTVGMGGSGMTLAVVIALAFLMKSKQSKEIGRLALGPGIFNVNEPVLFGMP
                     IVLNATILIPWIIAPLIVTTLNYFVMAAGIVPAPTGVAVPWTVPIVINGILATNSWLG
                     GALQVVDFFIVLIIWYPFLKLVDRTNIARESEAAIK"
     gene            complement(2411..2803)
                     /locus_tag="U0280_001292"
     CDS             complement(2411..2803)
                     /locus_tag="U0280_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chaperone"
                     /protein_id="HEM2271245.1"
                     /translation="MDNKLEFTTIDEYITQAPPETKEVLQKIRETIKAAAPEATEKIS
                     YQMPTFYLEGNLVHFAVAKNHYGFYPASSGIAAFESKLGNYKHSKGAVQFPIKEEVPY
                     ELIKEMTLFRLAENKQKAAEKLAKKKKK"
     gene            complement(2858..3343)
                     /locus_tag="U0280_001293"
     CDS             complement(2858..3343)
                     /locus_tag="U0280_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2271246.1"
                     /translation="MEPINHFFEWAKNNNWQVDLSAVEKNLPEQILKRYGKLPDAYKA
                     FYRQLNLCSNVGDTCWFLLEEDFLENEDDAFSWNSFEQMSLEAAEGDTNLENEVKLFW
                     NAHLPIMMSVGGCYEYYAITLNDGNIVHGSEPEFEESSIVADSFADFLLKIVAGEIVI
                     S"
     gene            complement(3359..3799)
                     /locus_tag="U0280_001294"
     CDS             complement(3359..3799)
                     /locus_tag="U0280_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADAR family protein"
                     /protein_id="HEM2271247.1"
                     /translation="MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFI
                     DKKIIKKVINTKKPIDAAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVAQHSEVKEML
                     LTTENAILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDEWNSK"
     gene            complement(3952..4039)
                     /locus_tag="U0280_001295"
     tRNA            complement(3952..4039)
                     /locus_tag="U0280_001295"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4003..4005),aa:Ser,seq:gct)
     gene            complement(4043..4115)
                     /locus_tag="U0280_001296"
     tRNA            complement(4043..4115)
                     /locus_tag="U0280_001296"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4080..4082),aa:Asn,seq:gtt)
     gene            complement(4168..4635)
                     /locus_tag="U0280_001297"
     CDS             complement(4168..4635)
                     /locus_tag="U0280_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HEM2271248.1"
                     /translation="MNQAELQRHMEEVSLQFFQKEFRHQAVFNARLRTTGGRYLLKSH
                     HIEMNPKYLENFGLAYFIGIMKHELCHYHLHLEKKGYQHRDQDFRELLKKVDAPRFCA
                     TIPREITMHEYTCKSCGKSFLRQRRFNVNRYRCGSCGGKLIQTGSKKIYTENA"
     gene            complement(4635..6812)
                     /locus_tag="U0280_001298"
     CDS             complement(4635..6812)
                     /locus_tag="U0280_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEM2271249.1"
                     /translation="MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRK
                     EMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLIDEQGKLTDELRAAITKAEKHQAL
                     EDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEA
                     ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEVDEKGVYEMYYEFNEMI
                     GKVASHRILAFNRGEKEDILRVQVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDA
                     YKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGC
                     KFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYKVEVIAIGNGTASRETEQ
                     FIVEVIRESKSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLA
                     ELVKIDPKSVGVGQYQHDVAQKRLNETLTFVVETAVNQVGVNVNTASASLLQYVAGLN
                     KTVANNIRKYREENGSFASRKELKKVPRLGAKSYEQSIGFLRILEGENPLDKTAIHPE
                     SYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIPEEAEKLSIGKETMRDIIDNLIAPG
                     RDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS
                     NSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNPNGSVK"
     gene            complement(6883..8514)
                     /locus_tag="U0280_001299"
     CDS             complement(6883..8514)
                     /locus_tag="U0280_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEM2271250.1"
                     /translation="MKKVWLNSVKDYTWARFRKDLLAGIIVGIIALPLAMSFAIASGV
                     SPEYGIYSSFVAGIIVSIFGGSKFQIAGPTGAFIPVLLGIVLTYGYQDLLVAGMMAGV
                     LLCLMGIFKIGTLIKFIPRPVTIGFTAGIAVTIFMGQVGNFLGLTGMEKHESFVANMN
                     EIWLHLDSWNFYSVFISCICMLVLFIFPKILPRIPAPLIGLVITTAIAMLFFPDALPT
                     IGSAYGDIPSTFPPFEFPDMTFANMSKLIGPAFVIAMLGGIESLLSAVVADGMTNTKH
                     NSNRELIGQGIANIVTPMFGGIPATGAIARTATNINNGATSRVSGVIHGIFVLLTLLV
                     LAPVAVNIPIAAMAPILMLVAWNMSERKTFQHIIKLKSGDTLVLIITFLLTVFASLTV
                     AVEVGLLLAVVLFAKQMGSSMQIEEIEPEGAEIAPHLHEKISIFTIRGPLFFGAAQIF
                     QQNIIKAIHVKPKYLILRMGKVPIIDATAEGYFHQIEKEFSKQGGQILITGLTDKAKE
                     SLKGSGLYDRIGEEHFFSHTEDAIHYAENALNKGD"
     gene            complement(8719..9318)
                     /locus_tag="U0280_001300"
     CDS             complement(8719..9318)
                     /locus_tag="U0280_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEM2271251.1"
                     /translation="MNKAVESNNLFVFQRSKALQQYCGDVYYTHEDENGFLYVLSDGL
                     GSGLEANRAAKATVDAIKEDIHADITDMLEKANQAVSGLRGAAIAIIKGDYLTKTLYY
                     TGMGNIRFYMIGMEDKLIFPLSGSGFLSGRKQKYRLQSFKYKPGSKFLMHSDGLVLSR
                     VRKSLESPLCVVKIGHLIERNILDIPTDDVTFMVGKFPE"
     gene            complement(9319..10098)
                     /gene="sigB"
                     /locus_tag="U0280_001301"
     CDS             complement(9319..10098)
                     /gene="sigB"
                     /locus_tag="U0280_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigB"
                     /protein_id="HEM2271252.1"
                     /translation="MPKVSQPDKEAKEKVYIWIAAYQENGDQDAQYNLVVHYKNLVES
                     IARKYSQGKSFHEDLVQVGNIGLLGAIRRYDATFGKSFEAFAVPTIVGEIKRFLRDKT
                     WSVHVPRRIKELGPKIKNAVEELTRELQSSPQISDIADFIGVTEEEVLEAMEMGKSYQ
                     ALSVDHSIEADSDGSTITLLDVVGGTDDGFERVNQRMLLEKVLPVLDEREQKILQFTF
                     IENRSQKETGELLDISQMHVSRIQRQAIKKLREALQNEEVE"
     gene            complement(10076..10549)
                     /gene="rsbW"
                     /locus_tag="U0280_001302"
     CDS             complement(10076..10549)
                     /gene="rsbW"
                     /locus_tag="U0280_001302"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma B factor RsbW"
                     /protein_id="HEM2271253.1"
                     /translation="MATMHDKITLQLPAKPEYVSLGRLSLSGIASRAGFSYEAIEDLK
                     IAVSEAITNSVKHAFKGEDDGEITVEYLIYEDKLEVRVSDNGTSFDLETRKQEIGPYE
                     VGEDAEMMRIGGLGLFLIETLMDDVKLYYDEGVSVVMTKYINEKQVEENAKSIST"
     gene            complement(10533..10877)
                     /gene="rsbV"
                     /locus_tag="U0280_001303"
     CDS             complement(10533..10877)
                     /gene="rsbV"
                     /locus_tag="U0280_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti sigma b factor antagonist RsbV"
                     /protein_id="HEM2271254.1"
                     /translation="MNISIEIKERDTDHIDIFVAGEIDAYTAPKVKEALEVYQVKEGI
                     VLRIDLTEVSYMDSTGLGVFVGAFKSLRQRQSELVLFGLSDRLFRLFEITGLSDIIEI
                     KNVEGEMNGNNA"
     gene            complement(11027..12031)
                     /locus_tag="U0280_001304"
     CDS             complement(11027..12031)
                     /locus_tag="U0280_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEM2271255.1"
                     /translation="MEKAFEGKYRDILIQYLEHQDEEILYTCEKLSREAMEERVSPEE
                     IVHLHRSVLELYGKELPDFVRLSFDVLLEIMVGYGLAYMEHLSLRTEQKELRSEIAQA
                     EDMQKTLMKTEVPEHDELDFGVISVAARQMSGDYYSFTEEGDKQIGIALADVIGKGIP
                     AAFSISMIKYALAGMTGDDRKPSIVLESLNQVAEENINDNMFITMFYGLYHEDTHLFE
                     YGSAGHELGLYYQHKENSFSDLYAKGLPLGVDKNAVYRQFDKKIEVGDAIFIMSDGVT
                     ETRTANGFLEREELTEIIAAHISLSAEKMVHAIYDQLVKMQNFELHDDFTLICIKRTK
                     "
     gene            complement(12048..12458)
                     /locus_tag="U0280_001305"
     CDS             complement(12048..12458)
                     /locus_tag="U0280_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma regulatory factor"
                     /protein_id="HEM2271256.1"
                     /translation="MTFQSCVKIINEWDIVAARQLGRKISKEIGFGTVDQARITTAIS
                     ELARNIFLYAGRGEICIEKVNESGKQGMIIVAKDKGPGIVDIRKVMQDGYTTSGGLGA
                     GLPGVKRLMDSFDIESSIEGDSKGTVITTTKWVR"
     gene            complement(12461..12817)
                     /locus_tag="U0280_001306"
     CDS             complement(12461..12817)
                     /locus_tag="U0280_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014096810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2271257.1"
                     /translation="MGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGV
                     VIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSA
                     MDLESGLEKLKQELGE"
     gene            complement(12823..13659)
                     /locus_tag="U0280_001307"
     CDS             complement(12823..13659)
                     /locus_tag="U0280_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2271258.1"
                     /translation="MYKDFANFIRTNKADLLNNWMNEMEKQSDQLINDIAKEAMYEET
                     SKEFVDLIVSNVTENGSKFNEKLDDFAEKVVHLGWPIHFVTTGLRVFGLLVYTAMRDE
                     DLFLKREEKPEDDAYYRFETWLSSMYNKVVTAYADTWEKTVSIQKSALQELSAPLLPI
                     FEKISVMPLIGTIDTERAKLIIENLLIGVVKNRSEVVLIDITGVPVVDTMVAHHIIQA
                     SEAVRLVGCQAMLVGIRPEIAQTIVNLGIELDQIITTNTMKKGMERALALTNREIVEK
                     EG"
     gene            complement(13910..14257)
                     /locus_tag="U0280_001308"
     CDS             complement(13910..14257)
                     /locus_tag="U0280_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEM2271259.1"
                     /translation="MMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIV
                     AAITAKIQKAKLPTHVEATRKDGFERDSVILLEQIRTIDKQRLTDKITHLDEDLMAKV
                     NKALEVSLGVVEF"
     gene            complement(14261..14539)
                     /locus_tag="U0280_001309"
     CDS             complement(14261..14539)
                     /locus_tag="U0280_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family ribbon-helix-helix protein"
                     /protein_id="HEM2271260.1"
                     /translation="MLEKEKRMIISVELTQEMIQELDVVVEKEKMGRSEVIMEATQQF
                     LQEKRARELRDEMERGYAEMATINFAIACECTHVEAEAEDRNISILGG"
BASE COUNT         4175 a         3238 c         2358 g         4896 t
ORIGIN      
        1 aaaaatgaat atatattcaa ttgaattcat ttctcttaca ccagcttttt tattataaca
       61 taatctgagt gactgtcaac ggctttttct aattttattt acattttttt catcggaagt
      121 tttttataca tttttacctc cataaaacaa agtcagctat gctttacggg catgctgact
      181 ttattttact tttctcggtg gtcaaccata ataaaacttc tcgtatcata gcgatgtctt
      241 gatctagaat attccactgg tctaccatct ttcaaataca ctacttgctc cacttctaaa
      301 actgggtcgt gttccccgca cgctaaatat tcttgatcat attcagatgg cttatcggca
      361 ttaattttcc gaaaggcacc gcttagcacg agtccaagtg aatcttgtaa gtatgcataa
      421 atcgaatgat gcaaaatttc tttcgttaaa ccaggaacta aatctgccgg catcgttgta
      481 tgctctaaca catatggtgc gccgtccaag agccgtaacc gaatcaactt gtacactggc
      541 tggtctgctt ttattaaaag ttgttcttgt gttttttcat ctgggaaagc aatatcgaat
      601 gcaataattt tactcgagat tcggttgtct cccatcattt ttgtcaaacc gtcataatcc
      661 cgcaaactcg catcttgctt attagctaag gcatttttca tgacaaaagt ccccgcaccc
      721 cgttgtctgt aaacaagtcc ttcaagcgct aaaacgtcaa aggctttttt tattgtcatt
      781 ctgctacaat cataagcttt acacaagctc acttgatcag gaagaatgga ttctggtgga
      841 taagtaccgt tgtttatttt ttcgcggata tctgctgcaa tcaattcata cttaaccaat
      901 tcgatcgctc cttcgcttga attaaaaatg tctagccatt tctagtcaaa ttatagcata
      961 tcgaaaagga aaatttaact tatttgatag ctgcctctga ttctctcgca atatttgtcc
     1021 gatcgactag ttttaagaac ggataccaga taatgaggac gatgaagaaa tcgactactt
     1081 ggagcgcccc gcctagccat gagttagttg caagaatacc attgatgaca attggcaccg
     1141 tccaaggaac agcaaccccg gttggagcag gaacaatacc agctgccatg acgaaataat
     1201 tcaaagtagt tacaatcaaa ggcgcaataa tccatggaat taaaatcgtt gcatttaata
     1261 caattggcat accaaaaagt accggttcat taacgttaaa aattcctggc ccaagtgcta
     1321 atcgaccaat ttctttactt tgcttactct tcattaagaa tgctagtgca ataacgactg
     1381 ctaaagtcat tccagatccg cccataccaa cagtaaagac ttccataaat ggtttcgtaa
     1441 taatatgtgg caatgggagt ccagctttat aggcatctaa attttcaagc attaacgtat
     1501 tccaaatcgg gtccattacc gagttgacga tgatttgacc atgcagtccg aaaaaccata
     1561 atacttggac aaaaaataaa gcgattagtg ttggaacaat tcctgaacca agccccacta
     1621 aaggcttttg aataacagta taaacaacat catgtaagtt tgtatggaag aagaattgta
     1681 ccataacatt aattgctaaa aaaatactta atgttaagat agcgggaata agtgctgcaa
     1741 atgatttagc tacagcaggt ggaactcctg caggcatttt gattgtccaa tcccgttgaa
     1801 caaaaaatcg atataattct gcagcaataa aaccagtaat cattccgata aacatacctt
     1861 ttgccccaag tcgatctaac gaaagcgctc cagtaataag ctctccatca ggactattaa
     1921 agaaaaatgg cgttaaaatc aagaagctag caagggcaac tgcccctcca taaattgctt
     1981 caactttata atatttagat agtgaatatc caattccaaa aacaacaaaa acagtcataa
     2041 tactcatcgt ggcgctttgg gcattcccaa gatacaactg taaaactgcc ttcgtttcat
     2101 cactccaaaa cggtagattc attaaaacca ccgcaatcga accaaacatt gttagcggaa
     2161 atgccaacat gaaagcatct cttaaagtgg ttaagtacct attctctcct agttttgcag
     2221 caagaggcat taacttttcc ccaagtaact ccataaactt attcacttta cttcccccaa
     2281 acatgatatt tttctaaaaa gaaaacgttt tctatttatt attatactca tttaatttta
     2341 aatgtctagt ctttttaaaa taaaagaccg aacaaaaaag actttcatca tcacaatgaa
     2401 agtctccttc ttattttttc ttcttctttg ctagcttttc tgctgctttt tgtttatttt
     2461 ctgctagtcg gaaaagtgtc atttctttaa ttaattcata aggaacttct tctttgattg
     2521 gaaactgtac agcacctttt gaatgcttgt aatttccgag tttagattcg aatgccgcaa
     2581 taccactaga ggctggataa aacccgtagt gatttttcgc aacagcaaag tgcaccaagt
     2641 ttccttccaa ataaaaagtc ggcatttgat aactgatttt ttctgttgct tccggtgcag
     2701 ctgctttaat cgtttctctg attttttgca acacttcttt tgtttccggt ggcgcttggg
     2761 taatatattc atcaatcgtt gtaaattcta gtttattatc catagtcgat tcctttctga
     2821 aacgtttttc ttattatagc aaatttccta attaatttta acttatcact atttctccag
     2881 ccacgatttt cagtaaaaaa tccgcgaacg agtctgctac aatcgaactt tcttcaaact
     2941 ctggttccga accatgaaca atatttccgt catttaaagt gatagcataa tattcataac
     3001 aaccgccaac actcatcata attggtaaat gtgcattcca aaatagtttt acttcatttt
     3061 ctaagtttgt atcgccttct gctgcttcta aactcatttg ttcaaaagaa ttccacgaaa
     3121 aggcgtcatc ctcattctct aaaaaatctt cttccaacaa aaaccaacaa gtgtcaccca
     3181 cattgctaca gaggttaagt tgtctataaa aggccttata tgcatctggc aactttccat
     3241 atctctttaa aatctgctct ggcaagtttt tctctacagc agacaaatct acttgccaat
     3301 tattattttt agcccattca aaaaaatgat ttattggttc catttaagct acctcccact
     3361 atttagagtt ccattcgtct ctgactttca tcaaaatctt gcctagacga ttttttccag
     3421 agccatctcc gccgtcgccc caataatgat cattttccgt atgttccact aaaatagcat
     3481 tctctgtggt taaaagcatt tctttcactt ccgaatgttg cgctactttt gctctgattg
     3541 cttttaacat cacttcgtct ttcatacttt cccagccttt tcgcagtggg aagtctctat
     3601 ttctacccaa ttttgctgca tctattggtt ttttcgtatt aattactttt ttaataattt
     3661 ttttatctat aaatttttgt gcttggaaat agtgttctgt ggttgggtaa gtcacgccgt
     3721 ctatgacaat tggatgtaaa gagaaattag agaaacagcc atagtccgca ttttcactat
     3781 aaaaatggat aaccttcatt ttgcacctcc gagtatttac gttatgttat ttgcaacttg
     3841 agcttatctt tcaaaataac tttagcatac atatagacgc aaatctatcg ctatttttcc
     3901 gcaaaaaaag acactgctta gtttcctaaa caatgtcttt ataagttatt acggagaagg
     3961 agggatttga accctcgcgc cgcgcgagcg acctataccc ttagcagggg cacctcttca
     4021 gccacttgag tacttcccca aactccacag gcaggactcg aacctgcgac cgatcggtta
     4081 acagccgatt gctctaccaa ctgagctact gtggaattat ctgacttcca ctagtatacg
     4141 cagaacttag taaaattgca agacttttca tgcgttttct gtataaattt tcttggaacc
     4201 tgtttgtatt aattttccac cacaactgcc acagcgataa cggttcacat tgaatctgcg
     4261 ttgtcttaaa aaggacttcc cgcaactttt gcatgtatat tcatgcatgg taatttcacg
     4321 tggtatcgtt gcacaaaatc tcggtgcgtc tacttttttt aataactcac ggaaatcttg
     4381 atcgcgatgc tgatagcctt ttttctctaa atgaaggtga taatgacata gttcgtgctt
     4441 cataatcccg ataaagtacg ctaatccaaa gttttctagg tacttggggt tcatttcgat
     4501 atgatgactt tttagcaaat aacgtccccc agtggttcgt aagcgcgcat taaacacggc
     4561 ttggtgacga aattcttttt ggaaaaattg cagcgacact tcttccatgt gtcgctgcaa
     4621 ttctgcttga ttcattattt aacacttcca ttaggattaa gcatagttaa agcaatacgg
     4681 tttttctttg tatctacttc atctacccaa acagttacaa cgtctcctac tgaaacgaca
     4741 tccatcgggt ttttaacaaa agaattgctt agtttcgaaa tatgcacaag gccgtcttgt
     4801 ttcacgccaa tatcaacaaa tgcgccaaag tcaactacgt tccgaacggt tccttgtaat
     4861 tccatgcctt gttttaaatc ttccatcgaa ataacatctt gttttaaaag tggtgctgga
     4921 agttcgtcac gaaggtcgcg accaggagca attaaattat caatgatatc gcgcatggtt
     4981 tctttaccga tgcttaattt ctctgcttct tctgggatac taagcgcttg aagtgcggct
     5041 tttaaatcct cgctaccaat atctttcaat ccgaaaccag ctgcttttac aatttgttca
     5101 gctgccttat aactttccgg gtgaatggcg gttttatcaa gcggattttc accttccaaa
     5161 atacgtaaga aaccgatact ttgttcatac gattttgccc caagacgagg tacttttttc
     5221 aactctttac gagaagcgaa cgagccgttt tcttcgcgat atttacggat attatttgcg
     5281 actgtcttgt ttaagccagc aacatattgt aacaaagaag ccgaggccgt attaacgttt
     5341 acgcccactt ggttaacggc cgtttcaacg acgaaagtta gtgtttcatt taaacgtttt
     5401 tgcgctacgt catgttgata ttgccctacg cctacagatt ttggatcgat tttcacaagt
     5461 tcagctagcg gatcttgcaa acgacgacca atcgaaacag cgctacgctc ttctacttga
     5521 tagtctggga attcttcgcg ggccgtttca ctcgctgaat aaacactcgc accagcttca
     5581 ttgacgatac aataataagc attcgatttc gattcacgaa tcacttccac aataaattgc
     5641 tctgtttcac gtgaggctgt tccgttacca attgcgataa cttccacttt gtatgtggat
     5701 aaaatctccg caattttttg tttggcttcc ggacggcgtg cttttgctgt atgtggataa
     5761 acaacgccaa tttctagtac tttccccgtt tgatctaata cagagaattt acaacctgtt
     5821 ctaaaagccg gatcgacccc aagaatgatt tttcctttta aaggtggttg taaaagtagt
     5881 ttgcgcaagt tctcggagaa aatatggatg gcttgttctt cgcctttttc tgttagttca
     5941 ccgcgaattt cacgttcaat tgccggtccg ataaagcgtt tataagcatc cattatagct
     6001 tcttctacgt atggtcgtgt tgcagaatta cggttttgga taactttttc aaataaatat
     6061 tggaaaattt ttgtcgtatc tacttggact tgtacacgta aaatgtcttc tttctctccg
     6121 cggttaaatg caaggatgcg gtgacttgct actttgccaa tcatttcgtt aaattcataa
     6181 tacatttcgt aaacgccttt ttcgtctact tcggcgtttt tcgctctgga ttcaatcatc
     6241 ccaaatttgc gcgtaaagtt acgaatccac tcacggaaac taggctcatc actgatttgt
     6301 tccgcgatga tttcatgtgc gccgagtaaa gcagcttctg ctgactccac ttctttttct
     6361 tctgaaatat agtttgcagc ttctttcagt gggtccgcgt tacttgggaa gctcattagc
     6421 caatcagcaa gcggctctaa tcctttttct ttcgcaatcg ttgcttttgt gcgtttcttt
     6481 tgtttgtaag gacggtataa atcttcgagc gcttgatgtt tttccgcttt ggtaattgcc
     6541 gctctcagtt cgtctgttaa ttttccttgt tcatctatta ggcgaataat ttcttcttta
     6601 cgattttcta attttgttac atattcaaag gtttcttcga tatcacggat ttctacttca
     6661 tctaagctac cagtcatttc tttacggtac cgcgcgataa atggaactgt gttgccttct
     6721 tccattaatt tgataacggc attgatttgc gctggtttat acgttagcga tttttggact
     6781 agttttatta ttttatcttg catttgttcc atacttgata gcctccaatt atttcattat
     6841 ctactaagtg taacataatt acgtttcaac tgacaaaagc tatcagtctc ccttatttaa
     6901 agcattttcc gcataatgaa tcgcatcttc ggtatgggaa aagaagtgtt cttcgccgat
     6961 tcggtcgtaa agcccgctac ccttcaaact ttctttcgct ttatctgtta gtccagtaat
     7021 caaaatttgc ccgccttgct tcgaaaattc tttttcaatt tggtggaaat agccttctgc
     7081 cgtagcatca ataatcggca ctttccccat tcgcaagata agatattttg gtttaacatg
     7141 gattgctttg ataatatttt gttggaaaat ctgtgctgca ccaaagaaaa gcggcccacg
     7201 aatagtaaaa atactaattt tctcgtgtaa atgaggagca atttcggcgc cttctggttc
     7261 gatttcttca atttgcatcg aacttcccat ttgtttagcg aaaagcacca ctgccagcag
     7321 caaaccaact tcgacggcca cagttaagct tgcaaatact gttaataaaa aggtaataat
     7381 tagcactaaa gtatcgcccg atttcaactt aataatgtgc tggaaggttt ttcgttcact
     7441 catattccaa gcaactagca ttaaaatcgg tgccattgca gcaattggaa tattgacagc
     7501 tactggtgca agtacaagta aagtgagtaa aacgaaaatc ccgtggataa cgccagagac
     7561 acggctagtt gcgccattat taatgttggt tgccgttctt gcgatagctc ccgttgcggg
     7621 aattccgccg aacattggcg ttacaatatt tgcgatacct tgcccaatga gctcgcgatt
     7681 actattgtgt tttgtattcg tcattccatc tgccacaacc gctgaaagaa gtgattcaat
     7741 cccgccgagc atcgcaataa caaaagctgg cccaatcaat ttactcatat tcgcaaaagt
     7801 catatcggga aattcaaaag gaggaaaagt actcggaata tctccatacg ctgacccaat
     7861 cgtcggaagc gcatccggga aaaatagcat cgcaatcgcc gtcgtaatca caagtccaat
     7921 aagtggtgct ggaattctcg gtaaaatttt aggaaaaata aataagacaa gcatacaaat
     7981 acaggaaatg aacacactat agaaattcca tgaatctaaa tgtaaccaga tctcattcat
     8041 attcgcgaca aatgattcat gtttttccat acctgttaaa ccgaggaagt tccccacttg
     8101 ccccataaaa atcgtgacag caatcccggc tgtaaatccg atagttacag gacgcgggat
     8161 aaatttaatt aaagtcccaa ttttaaaaat ccccattaag caaagtaaga cccctgccat
     8221 cattccagca acgagtaaat cttggtaccc ataagttaat acgattccta gtaaaactgg
     8281 aataaaagca ccagttggac cagcaatttg aaacttcgag cccccgaaaa tagaaacgat
     8341 tattcccgct acaaaactcg aataaatccc atattctgga cttacacctg atgcaatcgc
     8401 gaaggacatc gctagtggta aagctataat gcccacgata attcccgcaa gcaagtcttt
     8461 cctaaatctc gcccacgtat aatcttttac actattcaac caaactttct tcaatttgct
     8521 ccttctctct tatttatatt ttaatccgcg cgaaaaaacg caaagcaaga ttgcttcacg
     8581 cttattaagt gatatttatc acatgatgaa gtataaaaaa ctagcgctct attctaatat
     8641 accataaata gactaagttc tcatgtccat taagaaaaaa caccttttaa actaggaatc
     8701 atttaaaagg tgtttttgtt attccggaaa tttcccaacc ataaaagtaa catcatctgt
     8761 tggaatatct aatatattac gctcgattaa atgcccgatt ttcactacac aaagtggcga
     8821 ttctaggctt tttctaacgc gagaaagaac aagtccatct gaatgcatta aaaacttact
     8881 gcctggttta tatttaaacg attgcaaccg atatttctgt tttcgaccgg acaaaaatcc
     8941 agagccagaa agcggaaaaa taagcttatc ttccatccca atcatataaa aacgaatatt
     9001 acccatacca gtataataaa gggtcttcgt taagtagtca cctttaataa tagctatcgc
     9061 agcacctcga agtcctgaaa cagcctggtt cgctttttcg agcatatcgg taatatctgc
     9121 atggatatcc tcttttatgg catcaacggt cgctttggca gctctattag cttcgagccc
     9181 gcttccaagt ccatcagaaa gaacatacag aaaaccattt tcgtcttcat gggtataata
     9241 aacatccccg cagtattgtt gtaatgcttt agaacgttga aatacaaata aattatttga
     9301 ttcaactgcc ttgttcattt actccacttc ctcattctgc aacgcctctc gaagtttttt
     9361 aatagcttga cgttggattc tagacacatg catttgtgat atatcgagta gttcacccgt
     9421 ttctttttga ctgcgatttt caataaatgt aaattgcaaa atcttctgtt ctcgctcatc
     9481 taaaacaggg agaactttct ctaagagcat acgttgattc acacgttcaa atccatcatc
     9541 cgtaccacca acaacatcta ataaggtaat tgtacttcca tccgaatcag cttcaatcga
     9601 atgatctaca gaaagcgctt ggtagctttt tcccatttcc attgcttcta aaacttcttc
     9661 ctccgtgaca ccgatgaaat cagcaatgtc gctaatttgc ggcgagcttt gtagttctct
     9721 cgtcagctct tctacggcat ttttaatttt cggacctaat tctttgattc ggcgcggcac
     9781 atgcacactc catgttttat cacgtaaaaa tcgtttaatt tcgccaacaa tggttggtac
     9841 agcaaatgct tcaaagcttt tcccaaacgt cgcatcatat cttctaatag ctccaagtaa
     9901 gccaatattt ccaacttgaa ctaaatcttc atgaaaagat ttaccttggg aatatttgcg
     9961 agcaatagac tctactaggt ttttgtaatg aacaactaaa ttatattggg cgtcttgatc
    10021 gccattttct tggtaagcgg caatccatat atagactttt tctttcgcct ctttatcagg
    10081 ttgagatact tttggcattc tcctccacct gcttttcatt aatatatttg gtcattacga
    10141 cagaaacccc ttcatcataa taaagtttca cgtcatccat taatgtttca attaaaaata
    10201 aacctagacc tccgatacgc atcatctccg catcttcccc tacctcatat gggccaattt
    10261 cttgtttacg ggtttctaag tcgaagcttg ttccattatc agaaacacga acttctaatt
    10321 tgtcttcata aataagatat tctactgtaa tctcaccatc atcttctcct ttaaatgcgt
    10381 gctttacaga attagtgatg gcttcactta cggctatttt caaatcttca attgcttcat
    10441 aagaaaatcc tgcgcgactt gcaattcctg ataatgaaag tctacctaaa ctaacatatt
    10501 caggcttggc aggaagttgt aatgtaattt tgtcatgcat tgttgccatt catttcaccc
    10561 tctacatttt tgatttcaat gatatctgac aatcctgtga tttcaaacaa tcggaaaagt
    10621 cggtcgctta aaccaaacaa gacaagttca ctttggcgtt gacgtaagct tttaaacgct
    10681 cctacaaata cgcctaatcc ggtactatcc atataactta cttctgttaa atcgattcga
    10741 agtactatac cctcttttac ttgatatact tcaagtgctt cttttacctt tggcgctgta
    10801 taagcatcga tctccccagc aacaaatatg tctatgtggt cagtatcacg ttcttttatt
    10861 tctatactaa tattcatcac ttcaccccat ctaattttaa gtatactgtc gattttaccc
    10921 taactaataa aattaaaaca ttcaaaaata aaaacgctcc actctttaaa tacgtttact
    10981 caccagtaaa tgctctctaa agaatgaggt acgtcttcac ttcttcttat ttagttcgct
    11041 taatacaaat aagcgtaaag tcatcatgca actcaaagtt ttgcatttta actaattgat
    11101 cataaatcgc atgaaccatt ttttcagcag ataatgaaat atgcgctgct ataatttctg
    11161 ttaactcttc acgttcaaga aaaccattgg ctgttcttgt ttctgttaca ccatctgaca
    11221 taataaatat agcgtccccc acttcaattt tcttatcaaa ttgacggtag acagcatttt
    11281 tatctacacc cagtggtaaa cctttggcgt ataaatcaga aaagctgttt tctttatgtt
    11341 ggtaatataa gcccagttca tgtccggctg aaccatattc aaacaaatgt gtatcttcgt
    11401 gataaagccc gtaaaacatc gtgataaaca tattgtcgtt aatattttct tctgctactt
    11461 ggtttaatga ttcgagtacg atagatggtt ttctgtcgtc cccagtcatt ccagctagtg
    11521 cgtattttat catggaaata ctaaatgcgg ctggaattcc tttaccaata acatcagcaa
    11581 gcgcgatacc aatttgtttg tcaccttctt ctgtaaagct atagtagtca ccgctcattt
    11641 gtctagctgc gacgctaata actccaaaat caagttcatc gtgttccggt acctctgttt
    11701 tcattaacgt tttttgcata tcttctgctt gagcgatttc actacgtaat tctttttgct
    11761 cggttcttag actaagatgc tccatataag ctaagccgta gcctaccatt atttctagta
    11821 gtacatcaaa tgataatcgt acaaaatccg gcaactcttt tccgtatagt tcaagaaccg
    11881 agcgatgtaa atggacaatt tcttctggtg atactcgctc ttccatagct tctctggata
    11941 atttttcgca agtataaaga atttcttcat cttgatgttc taaatactga ataagaatat
    12001 cacggtattt tccctcaaaa gctttttcca tttttttcta gctctcctta ccgaacccat
    12061 ttcgttgttg taattaccgt tcctttagaa tcgccttcaa tactggattc aatatcaaaa
    12121 ctgtccatta aacgtttgac tcctggaagc cctgctccaa gtccgcccga tgttgtataa
    12181 ccatcttgca ttacttttct tatgtctaca atacctggac ctttgtcttt ggcaacaata
    12241 atcatccctt gtttaccaga ttcatttact ttttcgatac agatttctcc tcgtccagca
    12301 taaaggaaaa tatttctagc taattcactg atggcagttg taattcttgc ttggtcaacg
    12361 gttccaaagc caatttcttt agatattttt ctacctagtt gcctagcagc tacaatgtcc
    12421 cattcattaa ttatctttac acaggattgg aatgtcatgt tcattccccc aattcctgtt
    12481 taagtttttc cagaccactt tcaaggtcca tcgccgaaag tactccgcta aacgtaattc
    12541 cgagttcaat tagtgtaatc gcaactgctg gctgtatccc agttacaacc acttttgcac
    12601 ccattagttt agacatactt actacatctc caagaatttt tgcaataaat gaatcaataa
    12661 aatcgatgga agttatatca atgactactc ctctggccga cgtttcatgg atttttgcaa
    12721 gcaaatcttc ctggaattct accgcagtat gatcatctaa ttcactctgg atagaaatta
    12781 ataaacattc acctaacttt aagattggta tccccacagt attcacccct ctttttctac
    12841 tatctctctg ttcgtcaagg ctagcgcacg ctccatgcct tttttcattg tgttggtcgt
    12901 gataatttga tctaattcaa ttcctaagtt aacgattgtt tgcgcgattt ctggtctaat
    12961 acctacaagc atcgcctgac agccgacaag tctaaccgct tcggacgctt gaataatatg
    13021 gtgcgcaacc attgtatcaa caacaggaac tcccgtaata tcaatcaaaa ccacttctga
    13081 ccgatttttt acaacaccta ttaataaatt ttctatgatt aacttggctc tttccgtgtc
    13141 aatcgtccca attaacggca ttacagaaat tttttcaaat attggcaaaa gtggtgccga
    13201 taattcctgt agtgcacttt tttggataga aactgtcttt tcccacgtat ccgcgtaggc
    13261 tgtgaccact ttgttataca tggaggaaag ccatgtttca aagcgataat aggcatcatc
    13321 ttcaggtttt tcttctctct ttaaaaataa atcttcatct ctcattgctg tatatactaa
    13381 aagcccaaaa acacgtaggc cagtggtaac aaaatgaatc ggccaaccta ggtggaccac
    13441 tttctctgca aaatcatcta gtttttcgtt gaatttagag ccgttttcag ttacattcga
    13501 aacaattaaa tccacaaatt ctttgctagt ttcttcgtac attgcttctt ttgcaatgtc
    13561 gttgattagc tgatctgatt gtttttccat ttcattcatc cagttgttta gtaagtctgc
    13621 tttatttgta cggatgaagt ttgcaaaatc tttatacatc agttattttc caacctttct
    13681 ccactattaa caaaattttc tctcttattg tgcggtttgc ttaactgcct tttaaaaaag
    13741 acattagaaa caaatttagc gagtatgttg atacgcgttg tttgtaggtt tctgatgtcc
    13801 ttactgtttc ttcagagcag ttaattattt cattatgtat taaacttatt attttacgtc
    13861 agaccctttt gtcctgcatt catcattgta tgttattttt taggatggat taaaattcta
    13921 ctactcctag actgacttca agtgccttgt ttaccttggc cattaaatct tcgtccaaat
    13981 gtgtaatttt gtctgtcagg cgctgtttgt caatcgttct aatttgttct aaaagaatga
    14041 cagaatctct ctcaaagcca tctttacgag tagcttccac gtgtgttggc aattttgctt
    14101 tttgaatttt tgcagttatt gctgccacaa tcacagttgg actgaatcta ttaccaatat
    14161 cattttgaat gatgagaaca ggccgtattc ccccttgctc gcttccgacc acgggggaaa
    14221 ggtccgcgta gtatacgtca ccacgcttca ccatcagcca ttaacctcct aaaatactaa
    14281 tattcctgtc ttccgcttct gcttcgacat gggtacactc gcatgcgata gcgaaattaa
    14341 ttgtcgccat ttctgcatag ccgcgctcca tctcgtctct taattcgcga gcccttttct
    14401 cttgtaaaaa ctgttgcgtt gcttccatta taacttcact ccgccccatt ttttcttttt
    14461 ctacaactac gtcgagttct tgtatcattt cctgtgtcag ttctacggat attatcatcc
    14521 gcttttcttt ctctaacacg tgtcacaccc ccaaagcctc gtacctgtaa gtaacaacta
    14581 tatcgtacca ttatcacgcc ttgaagaaaa gagttatttc gcattttatt gttaagaata
    14641 ttacagttct agctgatata ctctctt
//
LOCUS       DASDXX010000055        14589 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.055, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000055 DASDXX010000000
VERSION     DASDXX010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14589
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.055"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            209..2380
                     /locus_tag="U0280_001310"
     CDS             209..2380
                     /locus_tag="U0280_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEM2271261.1"
                     /translation="MKQEKVQDLVNQMTLDEKIAQCLQLSPFLFKGTNKNAELTGPLL
                     QEMKLTDAHTENAGSVLGSSSALDMIGIQEAYLKTNRLGIPLVFMADVIHGYKTVFPI
                     PLALGCSFDRETVRVMAEVSALEATADGHHVTFSPMLDLVRDPRWGRVMESTGEDPFL
                     NSELGKAMVDGYQGDASKLHENLEQMAACVKHFAAYGAAEAGLEYNTVNMSTRELYQN
                     YLPAYNAAIQAGAKLVMTAFNVVDGIPATMNKWLNRDVLRDEMGFDGVLISDWGAVAE
                     VINHGTARNPKEAAQFSMEAGVDLEMMTTCYIHELKGLIEEGQLSESLLDEAVLRMLT
                     LKNDLGLFEDPYRGLKNNDRTKDILTDDSRGKARAAGIESAVLLENKNRLLPLAKEAK
                     IALVGPLATSPDILGGWNVYGEEKDGINVETGLREVFETVEVVSTEYTELSEEDKVAV
                     KAAVENMDVVVLALGEKNEWGGEAGSLATIRLPEAQYELAKFVQTLGKPVVITLFNGR
                     PLEVKELAESSDALLELWFPGTEAGRVTADLLSGASNPSGKLSMSFPQTTGQIPVYYN
                     HLRTGRPQTPENKGERYVSHYLDIPNEPFYPFGYGKSYSEFELKTSSLPKELNLGESL
                     HVEVTIKNISDIAGKEVIQVYLQDVTASISRPVKELKAFEKVALQAGEEKTVRFELTS
                     EAFSFYNQQLEKVQEPGLHRVFVGTSSEDVDVFEVEVGGYV"
     gene            2377..5637
                     /locus_tag="U0280_001311"
     CDS             2377..5637
                     /locus_tag="U0280_001311"
                     /EC_number="2.4.1.333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-beta-oligoglucan phosphorylase"
                     /protein_id="HEM2271262.1"
                     /translation="MTMLKEIKKADLSAAFYPSGELAWLKWKDIMLNQVIQNPLENRL
                     SQIYVRAHLGDKIEIYPLLSRDAEVGFNENGVEYRGVVGPFRYSVQMHFHTRGWFYDV
                     SVDGDLEFDFVYLQDLGLAEQAAVRTNEAYMSQYIDYHVTEGATGFTVQARQNQPQSE
                     RFPAVQIGALTKIVGYATDGFDIYGTNYKLTSELANLKEKSLPNRVYQYEFAQISLQT
                     ELFTNHGETSFYGYATENQPKASGAPIENLAELKSNISGQSYQTSTKATLNKHIGTPI
                     IGETISDNWLQENFPDRIQEEQQNGDLLSFFTPNYAHVVMREKEAELERPHGSILLDK
                     VDVLNPEATLSATTYMYGAFLSQLVAGNTNMNKWNSHARNPLNILQTSGLRIYIELDS
                     ELRLLGVPSVWETSTNYSTWYYQWNDDLITVKTTLTAESKEAFVTVHSEKGRSYKLVL
                     TNQVTMGTNEYDTTVKKEVKEGIVTYFPAEDSPILETYPALQFRVDGTYNELTDERYF
                     AKEYVGTAGLDVFVFEPSDKATFHVQAKLTDEFSEPTEDLEANNKVIRASYDELTAQF
                     HLNHQSTTAEKLNLTVYWYAHQMLVHYASPHGLEQYSGAAWGTRDVSQGPFEFFLATG
                     NKAVLRKLVLTIFSHQYQDTGDWPQWFMFDKYTSIQQEESHGDVIVWPLKIIGDYMEM
                     SGDTGILEEAIPFVDRESKTFTKEQGTLLEHIELAVETIEARFMKGTALSNYGDGDWD
                     DTLQPANAQLKKNMVSSWTVALTYQTFKRLAAFLPVGEKYETLANNVQADFAKYMTND
                     TDVIPGFLYLEEGKAPVWMIHPEDKDTNIKYRLIPLTRSVISELVDKKQASRNFEIIG
                     EHLLHPDGVRLMSEPAHYAGGVSTHFKRAEQAANFGREVGLQYVHAHIRYIEALAKIG
                     DKSAWHMLDVINPINIKEVVPNAALRQSNTYFSSSDAAFLDRYQAQNEFSRVKEGSIP
                     VKGGWRIYSSGPGIYLHQLISSVLGIRQTEDALIFDPILPEELDGLECHIELDNYPLD
                     LTFESADEGSIVVNGEKQPVENEANLYRTGALVLPKKNLTTKCSQITIKFSKNNRL"
     gene            5685..6650
                     /locus_tag="U0280_001312"
     CDS             5685..6650
                     /locus_tag="U0280_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2271263.1"
                     /translation="MVGIKDIAKKAGVSISTVSYALNGSPKVTEKTRKRIMTIANELN
                     YIPNMAARTLKTRETKIIGVYLTNYGGIFYGTLLEGLTQTLYKHGYELIACSGTKTHR
                     FLPEKMIDGAIILDANFPSSEIINYANRGHKLVVLDRELTHENVSQVLLDNKGGATLA
                     IDYLSTNFKGDFYVITGPEDSYDARVRLETAKQELARSGDKKVHIIEGDFSEESGEKA
                     AAIITENWKAPVSVFALNDNMAIGMYRYFAGTDLEIGKDVRIIGFDNTDISEYLVPRL
                     ATIEYSKYKWGAVAADKLVELLEGGKAENEIIYTTRISGPSVSNN"
     gene            6710..7693
                     /locus_tag="U0280_001313"
     CDS             6710..7693
                     /locus_tag="U0280_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2271264.1"
                     /translation="MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEK
                     YGDLTYFTDIEEMGKSDALDAVYIASPNALHYQHAVSLLKNKKHVIVEKPIFSTVAEL
                     EHAHQIARENNVFLFEAARHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLN
                     GEEPNIFSLKFSGGSIVDLGVYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEY
                     PTFNITIIQGKNSQSFLPSEIYGQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVA
                     NDMQFEAAEFARIIEQSDRDTYEYLADLSLKVLRVSNELRHQNDIWFDAEK"
     gene            7827..9155
                     /locus_tag="U0280_001314"
     CDS             7827..9155
                     /locus_tag="U0280_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2271265.1"
                     /translation="MTESNIPSFWAEKWQEHGYETPTEIQSAMYQPIKDGADVLAVSP
                     TGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVMQITEVIRSWLPSDELTVISLIG
                     GANVKRQIEKLKKKPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQLLRQENFKS
                     TLEIVESAVRDRQLTLVSATKLENPDMFFAQTENTPVMLEVTAKPEELTNVEHLYMDV
                     ESRDKATLLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDKVKAAGIHGEIRKEKRKK
                     YLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRMGKSGT
                     VITFANPREIRTLKQYLTIHNLKGKQVRFYQGKLLDGAVPENKIAKKASRLPKQVQKG
                     KKDDVKKPFRKDKPTETAGKRKDKPTNASKPTRNNKPNKFNKKPTNFKRS"
     gene            9289..11967
                     /locus_tag="U0280_001315"
     CDS             9289..11967
                     /locus_tag="U0280_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HEM2271266.1"
                     /translation="MSSRKEEVLQLLNEKEEKVSAADVAELLQMDRANASRYLNDLFK
                     EKRIDKLPGKPVFYQAIKKAERASQHAGNIQESAFGRLIGSEDSLKVSIQQAKAAILY
                     PPNGLHSLILGRTGTGKSLFAECMYQFAKESETIPADAPFVSFNCADYAQNPQLLFGH
                     IFGVIKGAYTGAEETREGLLKKADGGILFLDEIHRLPPEGQEMLFTFIDKGEFRPLGE
                     SANVHHAQVQIIGATTESPDNFLLETFTRRIPMTITLPSLAERNLEERYQLVEFFLNQ
                     EATRLHQSIRVHRKALIAFLLYHASANVGQLQRDLKLACAKAFLHYKTKTANYILIEQ
                     DDLPIHVQKGLLHLKDEPEKLNRLIDVNKAIFKFVDTSDEFVETEDVHDVYHAIQEKA
                     DQLMKEGKDQSELEEALYVDVDQYFHNYMVQLPTHQTAKEIIAPAVWELTEKVYAMAE
                     EKLNRKYNEKMKFAFSLHLQSTIERVREQKHIIHPDLNNIRKKYPKEFQVAIDLSALI
                     EQELSIEIPFDEIGFLTMFLTEEVVDTSLSQENQVEVIVMMHGRSTATSMVETVQELL
                     SIESGIALDMPLTVEVKAMYEKLKQMVIKLNPVKGVLILSDMGSLTSFGNMLTEELGI
                     RTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQLFENKYKAHVLRAKPVKNAVIFT
                     CFTGEGVAEQLRKVVAPIIDETKIEIIVLQFLHKEAFRERIDQLMEEYNILAIMGSVA
                     FEYRDIPFFSALEVLSEGGLGIVSRILNDEVPYEKLIASLEGNLQAVSSAEQLVYFLR
                     KVISELQLQLNVILESGVDIGMILHLAFLIERVKLGAVDREFPDLNEFAKNHMVEMQI
                     TQQMMENVEIEYDIVIPQSEIAYLTQMMLSNQVEEN"
     gene            12127..12435
                     /locus_tag="U0280_001316"
     CDS             12127..12435
                     /locus_tag="U0280_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271267.1"
                     /translation="MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDAAVIAVAEADFDK
                     YKGNVDVVLLAPQVRFLEKNLKRVLDPLGIPVAIINGIDYGTMDGEKVLNDALAMIEK
                     "
     gene            12505..12807
                     /locus_tag="U0280_001317"
     CDS             12505..12807
                     /locus_tag="U0280_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2271268.1"
                     /translation="MELEQTIMQLIVHGGNAKSDAMLAIEAAKKGDFDAADEQIKSAE
                     AALLEAHHSQTSLIQGEARGEKAEVSLLLVHAQDHLMNAITFKDLAKEIVDLYRSK"
     gene            12829..13917
                     /locus_tag="U0280_001318"
     CDS             12829..13917
                     /locus_tag="U0280_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HEM2271269.1"
                     /translation="MRKLGISVFPQHVALEESLEYIETAAKYGFSRIFTCLISANDEA
                     EFAKLETICKRAKELGFDVIADVDPTVFESLNITYKELDRFKELGLAGLRLDLGFSGS
                     EEAAMSFDDTDLKIELNISNGTRYVENILSYQANVGNIIGCHNFYPRKYTGLSREHFL
                     RTSKQFKDLNLRTAAFISSNSGEFGPWFVVDGGLPTMEEHRGVDITVQAKDLWNTGLI
                     DDVIVGNMFASEDELRALSELNRNELQLAVEFLDGATDVEKEIVLTQKHFNRGDASEY
                     VLRSTMTRVNFKQFDFPAHDTNTIAKGDVTIDNDGYERYKGEMQVALQEMENSGNTNI
                     VARIVPEERYLLDTILPWQHFRLVEKKK"
     gene            complement(14009..>14589)
                     /locus_tag="U0280_001319"
     CDS             complement(14009..>14589)
                     /locus_tag="U0280_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2271270.1"
                     /translation="NYEKRTLKKKTAIIQAALSLFGEQGFSDVSIKDIAALADVSQVS
                     IYNYFGSKEALVGECASIIMQDTITLAEEILASEGTFTQKLERALQLCNAEINLSLSK
                     FISQEASKDAQFITLLVNNINALKNEIYMKYIAIGKQEKIIDNRLSDQSIQLFIEAIN
                     GLGFTVPEEELEEKQAEIVQLFLYGLIGKCKE"
BASE COUNT         4952 a         2604 c         3047 g         3986 t
ORIGIN      
        1 gcgtctgaac attgtatatc aatggttttg tggatataaa ttttttctgg ataaactttt
       61 acgaaaacga gatagtatag aagaaaaaga aaaaaaggag cgtttcacca tgtgaatgtc
      121 gtttttggtt gactaaagaa aagaaagcgc ttatactgtt gttatatttg aatagaaacg
      181 tttcgaaaaa agtgttcagg aggttcctat gaaacaagaa aaagtacagg atttagtcaa
      241 tcaaatgaca ttagatgaaa aaatcgctca atgtcttcaa ctttcccctt ttctttttaa
      301 aggtacaaac aaaaatgcag aactaacagg gccgcttctt caagaaatga aattgacgga
      361 tgcgcatacg gaaaatgcgg gttcggtgct tggatcaagc tcggcgcttg atatgattgg
      421 tattcaggaa gcttatttaa aaacgaatcg attaggaatt ccgcttgttt ttatggcgga
      481 tgtcatacac gggtataaaa cggtatttcc tattccgctt gcacttggtt gttcttttga
      541 ccgggagact gttcgagtga tggcagaagt ttcggcgctc gaagcaacgg cagatgggca
      601 tcatgtcact ttttcaccaa tgcttgattt agtacgggac cctcggtggg gacgtgtgat
      661 ggaatcaact ggtgaggatc catttttaaa tagtgaactt ggaaaggcaa tggtagatgg
      721 ttaccaaggc gatgcgagta aactacatga aaacttggag caaatggcgg catgtgtcaa
      781 acattttgcg gcatacgggg ctgcggaggc tgggctggaa tacaacacag ttaatatgtc
      841 tacgcgcgaa ctttatcaaa attatttacc agcttataat gccgcaatac aagctggagc
      901 taaattagtc atgactgctt ttaacgtggt agacgggatt ccagcaacaa tgaacaaatg
      961 gcttaaccga gatgttctac gagacgaaat gggttttgac ggtgtactta tttctgactg
     1021 gggcgctgtt gccgaagtaa ttaatcacgg aacagccaga aatcctaaag aagccgcaca
     1081 gttttcgatg gaagcaggcg ttgatttaga aatgatgacg acttgttata tccatgaatt
     1141 aaaaggttta attgaagaag gccaattatc cgaaagcctt ttagatgaag cagtacttcg
     1201 gatgttaact ttaaaaaatg atttagggct atttgaagat ccctatcgcg gattaaaaaa
     1261 taacgaccgc acaaaagata ttttaaccga tgatagccgc gggaaagctc gggcagcagg
     1321 tattgaatct gctgtgttat tagaaaataa aaaccgatta cttccactgg ctaaagaagc
     1381 aaaaattgcc ttggttggtc cacttgcaac gtcgcctgat attctcggtg gttggaatgt
     1441 atacggtgaa gaaaaagatg gcatcaatgt tgaaacaggt ttgcgtgaag tatttgaaac
     1501 ggtcgaagtc gtttcaacgg agtacactga attgtcggaa gaagacaaag tggcagtgaa
     1561 agcggcagta gagaacatgg atgttgtcgt gcttgcccta ggtgaaaaaa atgaatgggg
     1621 cggggaagca ggaagtcttg ctactatacg cttgccggaa gcacaatatg aattagcgaa
     1681 attcgtccaa acattaggaa aaccagttgt tattacatta tttaatggta gaccgctcga
     1741 agtgaaagag ttagcagaat ctagtgatgc tcttcttgaa ttatggttcc cagggacaga
     1801 agcaggccgt gtcactgcag atttattaag tggtgcaagt aatccttcgg ggaaattatc
     1861 catgtcattc ccgcaaacaa ctggtcaaat tccggtttat tataatcatt tacgcactgg
     1921 acgaccacaa acaccggaaa ataaaggcga acgctatgtg tcgcattatc ttgatattcc
     1981 aaatgaacca ttttatccat ttggttacgg aaaaagctat agcgaattcg agttaaaaac
     2041 aagcagtctt ccgaaagaac taaatctagg tgaatcacta catgtggaag taaccattaa
     2101 aaacattagt gatattgctg gaaaagaagt aatccaagtt tatttacaag atgtgacagc
     2161 gagcatttca cgaccagtca aagaattaaa agcttttgaa aaagtagcgc ttcaagctgg
     2221 cgaagaaaaa acagttagat ttgaattaac aagcgaggca ttttcattct ataaccagca
     2281 gcttgaaaaa gtgcaggaac cgggacttca ccgagttttt gttgggacta gtagtgaaga
     2341 tgtagacgtt tttgaagtgg aagtgggtgg atatgtgtga caatgttaaa agaaattaaa
     2401 aaagcggatt tatcagccgc attttatccg agcggagagc ttgcttggtt aaaatggaaa
     2461 gatattatgt taaatcaagt gattcaaaat ccattagaaa accgcttgtc gcaaatatat
     2521 gtacgcgcgc atttaggaga taaaatagaa atttatccac tacttagcag agatgcggaa
     2581 gttggtttta acgaaaatgg cgtggagtat cgcggtgtag ttggaccgtt tcgttatagt
     2641 gtgcaaatgc attttcatac gcgcggttgg ttttatgatg tctcagtgga tggggatctt
     2701 gagtttgatt ttgtttactt acaagacttg gggcttgcag aacaagcagc agtgagaaca
     2761 aatgaagctt atatgtcgca atatattgat tatcatgtga cagaaggcgc gactggtttc
     2821 acggttcaag cccgccaaaa tcaaccacaa agtgagcgtt tcccagcagt tcaaattgga
     2881 gcattaacga aaattgttgg gtatgcaaca gatggttttg atatttatgg aacaaattat
     2941 aaactgacta gcgaactagc gaaccttaag gaaaaatcat tgccaaaccg agtctaccaa
     3001 tatgaattcg ctcaaatatc cttacaaaca gagctattta ctaatcacgg tgaaacaagc
     3061 ttttacgggt atgcaacaga aaatcaacca aaagcatctg gagcaccaat cgaaaattta
     3121 gcggaactaa aaagtaatat ttcagggcaa tcttaccaaa caagtactaa agctacacta
     3181 aacaaacaca taggaacacc gattatcggt gaaacaattt ctgacaactg gcttcaagag
     3241 aacttcccag accgaattca agaagagcaa caaaacggcg atctactttc ctttttcaca
     3301 ccaaattatg cccatgttgt gatgcgtgaa aaagaagcag aattagaacg cccgcatggc
     3361 agtattttgc ttgataaagt ggatgtttta aatccagaag cgacactttc ggcaacaacg
     3421 tacatgtatg gggcattttt atcacaatta gttgctggaa atacgaatat gaacaaatgg
     3481 aatagccatg cgcgtaatcc gcttaatatt cttcaaacaa gtggattaag aatttatatc
     3541 gaattagatt ccgaacttcg actactcggt gtgccgtctg tctgggaaac tagtacaaat
     3601 tactcgactt ggtattatca gtggaatgac gacctaatta cggtaaaaac cacattaaca
     3661 gctgaaagta aagaggcatt cgtcactgtt cattcggaaa aaggtcgctc atataaatta
     3721 gtcttaacaa atcaagtaac tatggggaca aatgaatacg atactaccgt gaaaaaagaa
     3781 gttaaagaag gaatcgtcac ttatttccct gcagaagact cgccgatttt agaaacctat
     3841 ccggcgcttc aattccgcgt agatggaact tataacgaac tgactgacga acgttatttt
     3901 gcaaaagaat atgtgggaac agcaggtttg gatgtgtttg tttttgaacc aagtgataaa
     3961 gcgactttcc acgttcaagc aaaactcact gatgaatttt ctgaaccaac agaggattta
     4021 gaagcaaata acaaagtaat tcgcgctagc tatgacgaat taactgcgca gttccattta
     4081 aatcatcaaa gtacaacagc ggagaaactg aacttaacgg tttattggta cgcgcaccaa
     4141 atgttagttc actatgcttc accacatggg ttagaacagt acagcggggc ggcctggggt
     4201 acgcgtgatg tgagccaagg tccatttgaa tttttccttg caacaggcaa taaagctgtt
     4261 ttacgtaagc tagtgttgac gattttttct catcaatatc aagatactgg tgattggcca
     4321 caatggttta tgtttgataa atatacatcg attcagcaag aagaaagcca tggcgatgtt
     4381 attgtttggc ctctgaaaat tattggtgat tacatggaaa tgagcgggga tacagggatt
     4441 ttagaagaag ctattccttt tgttgatcgc gaatcgaaaa cctttacgaa agagcaagga
     4501 actcttcttg aacacatcga acttgcagta gaaacgattg aagcccgctt tatgaaagga
     4561 acggctcttt ctaattacgg cgatggtgac tgggatgaca cacttcaacc agctaatgcc
     4621 cagctgaaga aaaacatggt gtccagctgg acggtcgcgc taacatatca aacatttaaa
     4681 cgtttagctg catttttgcc agtaggtgag aaatacgaaa cattagcaaa caatgttcaa
     4741 gcggactttg cgaaatatat gacaaatgat actgatgtta ttccaggttt cctatattta
     4801 gaagaaggaa aagcacctgt atggatgatt cacccagaag acaaagatac gaatattaaa
     4861 tatcgcttaa taccactgac gagaagtgta atttctgaat tagtcgataa aaagcaagcc
     4921 agtcgcaatt ttgaaattat tggtgagcat ctacttcatc ctgatggcgt aagattaatg
     4981 agtgagccag cgcattatgc tggtggtgta agtactcatt ttaaacgggc agagcaagca
     5041 gccaattttg gtcgagaagt cggtttgcaa tatgtgcacg cgcatattcg ttatattgaa
     5101 gctttagcaa aaattggcga taaatccgct tggcatatgc tggatgttat taatccaatc
     5161 aacataaaag aagttgtccc aaatgcggca cttcgtcaaa gtaatactta tttcagtagt
     5221 tctgatgcag cgtttttaga tcgctatcag gcgcaaaatg agtttagtcg tgtaaaagaa
     5281 ggtagtattc ctgtgaaagg cggctggcgg atttattcta gtggcccagg aatctattta
     5341 catcaattaa taagttctgt tcttggtatt cgccaaacgg aagatgcgct tatttttgat
     5401 ccaattttac ctgaagaatt agatggatta gaatgtcata ttgaactaga taattatccg
     5461 cttgatctta ctttcgaaag tgcggatgag ggttctattg tcgtgaatgg tgaaaaacaa
     5521 ccagttgaaa atgaagcgaa tttgtaccga actggcgcac tcgttttacc gaaaaagaat
     5581 ttaacgacaa aatgttcaca aatcacgatt aaattttcaa aaaataaccg tctctaaggt
     5641 tgttttgtgt ataataaaag aaaacagaaa aggatgcgat tcacgtggta ggaattaaag
     5701 atatcgcgaa aaaggcaggg gtttccattt caacagtatc ctacgcgctt aatggcagcc
     5761 cgaaagtgac cgaaaaaacg cgaaaacgaa ttatgaccat cgcaaatgaa ttgaattata
     5821 ttcccaatat ggcagcacga acgttaaaaa caagagaaac aaaaattatc ggcgtctatt
     5881 taacgaatta cggcgggatt ttttacggga ctttactgga aggtttaacg caaacgctat
     5941 ataaacatgg atatgaactc atcgcttgca gtggcacgaa aacacaccga tttttacccg
     6001 agaaaatgat tgatggcgct attattttag atgcgaattt cccgtctagc gaaatcatta
     6061 attatgctaa tcgtggtcat aaattagtgg tgcttgaccg cgaacttacc catgagaacg
     6121 tgagccaagt ccttctagat aataaaggcg gcgcaacgct agcaattgat tatttatcta
     6181 ctaattttaa aggtgatttc tatgtcatta ccggtccaga agattcttat gatgcaagag
     6241 tcaggctcga aaccgcgaaa caagaactcg ctcggtcagg tgacaaaaag gtgcatatta
     6301 ttgaaggaga cttttccgaa gaaagtggcg aaaaagcagc agccattatc acggaaaact
     6361 ggaaggcgcc tgtttctgta tttgccctaa atgataacat ggctattggg atgtatcgtt
     6421 attttgcagg gacagatttg gaaatcggca aagacgtacg aattattggc tttgataata
     6481 cggatataag tgagtatttg gttccacgtc ttgctactat cgaatactcg aagtacaaat
     6541 ggggcgcagt tgccgcagat aaactagtgg aactccttga aggtggaaaa gctgaaaacg
     6601 aaataatcta tactactaga atcagtgggc catctgtttc aaacaattag tacgcttttt
     6661 tccttatttt aaggtatact taagataaaa tgaagggagc tgttggctaa tgaaacttgg
     6721 aattatggga acgaactgga ttacggattc ttttattgaa ggtgctatta attcaggtga
     6781 atggaatctt actgcggtat attcgcgcac agaagaaaaa gcacgcgcat ttggagaaaa
     6841 atatggggac ttgacttatt tcacggatat agaagaaatg ggcaaatcag atgcacttga
     6901 tgcggtctac attgcttctc ctaatgcgct ccattatcaa catgcggtta gcttactgaa
     6961 aaataaaaaa catgttatcg tagaaaaacc gattttttct accgtagccg aattagagca
     7021 tgcgcatcaa attgctcgcg aaaacaatgt ctttttattt gaagcagcgc gccacattca
     7081 agagccaaac ttcaaacgcc tacaagaaaa catcgaaaaa gtaggtacta ttcacggggc
     7141 aacactagcg tacatgaagt attcttccag atacgatcaa gttttaaacg gtgaagaacc
     7201 aaacatcttc tccttgaaat tttctggcgg atccatcgtt gacttaggtg tctatccatt
     7261 atattcagcg attacactat tcggtgaacc cataaaagca acttattttg ccactaaatt
     7321 accaactggt gtagacggac ttggaccaat aattctcgaa tacccaacat tcaatattac
     7381 tatcattcaa gggaaaaact cacagtcctt cctgccaagc gaaatttatg gtcaaaaagg
     7441 aacactaatt gtcgatccac ttactggaat tgaaaagatt actttttacg acaacgcaac
     7501 aaaagaagaa acagaacttg ctggtccagt tgtagccaat gatatgcaat ttgaagcagc
     7561 agagtttgct agaattatcg aacaaagcga ccgagataca tatgaatact tagcagacct
     7621 aagcttgaaa gtattacgtg tctccaacga acttcgtcac caaaatgaca tttggtttga
     7681 cgcagaaaaa taattttgaa gagctaggaa aaggctttcg ggctgttttc tagctctttt
     7741 tctgcgcaat gtaaattcta aataaaagtg cagacttgca gtaagcatgg tatgatacag
     7801 agaagaacta ataaaggagt cgggtcatga cagaatcaaa tatcccaagc ttttgggcgg
     7861 aaaaatggca agaacatggt tatgaaacgc caacagaaat tcaaagcgca atgtaccaac
     7921 caatcaaaga cggtgcagat gtacttgcag tatcaccaac tggaacgggg aaaacggtgg
     7981 cttatgcact gccaaccctt gaaaaaatag aggcaattcc aaaaacacaa tggcttgttt
     8041 tagcgccatc acatgaatta gttatgcaaa tcacggaagt aattcgttcg tggttgccaa
     8101 gtgatgaact cacagtaatc tctttaatcg gaggagccaa tgtcaaacgc caaatcgaaa
     8161 aattaaagaa aaaaccacaa attatcgtag cctctccagg gcgtgcactt gaactaatca
     8221 aacaaaagaa aattaaaatg catgaaatta aaacgattac gttggacgaa tgcgaccaat
     8281 tacttcgcca agaaaatttt aaaagcacac ttgagattgt tgaaagtgct gttcgcgatc
     8341 gccaattgac acttgtatct gcgacaaaat tagaaaatcc ggacatgttt tttgcacaaa
     8401 cagaaaacac accagtaatg ctagaggtaa cagcaaaacc agaagaatta acgaatgtgg
     8461 aacacctata catggatgtg gaatcacgtg ataaagctac tttactgcgc cgtatttcgc
     8521 atattaaaga catgcgcggc ttagttttcg taaaagacaa accacgaatg gaaattttac
     8581 tagaaaaact tcattacgat aaagtaaaag cagctggaat tcacggcgaa attcgcaaag
     8641 aaaaacgcaa aaaatatctg gacgacttta aaaaaggcac gttgacttat ttaatcgtga
     8701 cagatgtagc ggctcgtggg ctagacatag aagatttacc ttacgtgatt cactatgact
     8761 tagcagcaag tgaaaaagag tacacgcacc gttctggacg gactggacga atgggtaaat
     8821 caggtacggt tattactttc gctaacccac gtgaaataag aacattaaaa caatatttaa
     8881 ctatccacaa cttaaaaggg aagcaggttc gcttttatca agggaagctt cttgacggcg
     8941 ctgttccaga aaacaaaatt gccaaaaaag catctagact accaaaacaa gttcaaaaag
     9001 gtaaaaaaga tgacgtgaag aaaccattcc gtaaagacaa accaacggaa actgctggaa
     9061 aacgtaaaga taaaccaact aacgcgtcta aaccgacacg taataataaa ccaaataaat
     9121 ttaacaaaaa accaactaat ttcaaaagat cttaagatgc gttgaatgtt tttctctctt
     9181 gatagatagg aaagcattcg cgcttttttt agttaatttt tatcgttgcg aggatgctgt
     9241 ttaaaaaggt ataatggaaa catagagttt caaaaaggag tagagtagat gtctagtaga
     9301 aaagaagaag tcctccaact tctaaacgaa aaagaagaaa aagtatctgc tgcagatgtc
     9361 gcagaattgc ttcaaatgga cagagcaaac gctagtcgtt atctaaatga tctttttaaa
     9421 gagaaaagaa tagacaaact tcctgggaaa ccggtatttt atcaagccat taaaaaagcg
     9481 gaaagagcta gccaacatgc gggaaatata caagagtctg cttttggaag attgataggt
     9541 tcagaagata gtttaaaagt aagtattcaa caagccaaag ccgccattct atacccgcca
     9601 aacgggctgc acagcttaat tctaggacgg acgggtacag ggaaatcact ctttgctgaa
     9661 tgtatgtatc aatttgcgaa agaatcggaa actatcccgg ccgatgcgcc gtttgtttcg
     9721 tttaactgtg ccgactatgc acaaaatcca caacttttat ttggtcacat ttttggggta
     9781 attaaaggag catatacagg ggcagaagaa acgcgcgaag gtttgctaaa aaaagcagat
     9841 ggcgggattt tattccttga tgaaatccac cgcttgcctc cagaaggtca agaaatgctc
     9901 tttactttta ttgataaagg ggaatttcgt ccactaggtg aaagcgcgaa tgtccaccat
     9961 gcacaagtcc aaattattgg agcgacaaca gaatcaccag ataatttttt attagaaaca
    10021 ttcacaagac gtattccgat gacaattacc ttaccatccc ttgcagaaag aaatctggaa
    10081 gagcgttatc aattagtgga gtttttcttg aaccaagaag ctacaagact tcaccaatcc
    10141 atacgtgtac acagaaaagc gctgattgct tttttacttt atcatgcaag tgcgaacgtc
    10201 ggtcaattgc aaagagactt aaaactagcc tgtgccaaag catttttaca ttataaaacc
    10261 aaaacggcta attatatatt aatcgaacaa gatgacttgc ctatccacgt tcaaaaaggt
    10321 ttactccact taaaagacga accagaaaaa ttaaatcgtt tgattgacgt gaacaaagcc
    10381 atttttaaat ttgttgatac gagtgatgaa tttgttgaaa cagaagatgt tcatgatgtt
    10441 taccatgcca tccaagaaaa agcagatcaa ttaatgaaag aagggaagga ccaaagcgag
    10501 ttagaagaag cactttatgt tgatgtagat caatatttcc acaactacat ggtccagtta
    10561 ccaacccacc aaactgccaa agaaattatt gcgcctgctg tttgggaatt aacagaaaaa
    10621 gtatatgcca tggcagaaga aaaactaaat cgcaaataca acgaaaaaat gaaatttgct
    10681 ttttctttac atttacaaag taccatcgaa cgagtacggg aacaaaagca tatcattcat
    10741 cctgatttaa ataatattcg caaaaaatat ccaaaagagt tccaagtagc tattgattta
    10801 tccgcactga ttgaacaaga attaagcatt gaaattcctt ttgacgaaat tgggttttta
    10861 acgatgttcc tgacagagga agtagtagat acgtcacttt ctcaagaaaa tcaagtcgaa
    10921 gttattgtga tgatgcatgg ccgttcaact gctacgagta tggtggagac ggtacaggaa
    10981 ttactgagca ttgaaagcgg gattgctctt gatatgccgc tcactgttga agtaaaagcg
    11041 atgtatgaaa aattaaaaca aatggtcatt aagttaaatc ctgtcaaagg cgttctaatc
    11101 ctttctgata tgggttccct cacttctttc ggcaacatgc tgaccgaaga actgggaatc
    11161 cgtacaaaaa ccgttacgat ggtaagtaca ccagttgtac tggaagcgat gcggaaagct
    11221 tcacttggtc gtggtttaga agatatttat caaagctgtg agcaattatt tgaaaataaa
    11281 tataaagcgc atgtcttacg cgctaaacct gtgaaaaatg cggttatctt cacttgtttt
    11341 actggagaag gagtagccga acagttgcgt aaagtcgtag caccaattat tgatgaaaca
    11401 aaaattgaaa ttattgtatt acaattcttg cataaagaag cttttcggga gcgaattgat
    11461 caactcatgg aagaatataa tattctagcc atcatgggat cagtagcctt tgaatatcgc
    11521 gatatcccat tctttagcgc actggaagtt ctatcagaag gtgggttagg gattgtttct
    11581 agaatattaa atgatgaagt accttacgaa aaattaatcg cttcattaga aggaaattta
    11641 caagcagtaa gctctgctga acaactggtt tactttttac gaaaagtaat ttcagaattg
    11701 caattgcaac ttaatgttat acttgagtca ggtgtggaca ttggtatgat tctacactta
    11761 gctttcctca tcgaacgcgt gaaattaggc gctgtcgacc gggaattccc agacttaaat
    11821 gaatttgcca aaaatcatat ggtggaaatg caaattacac aacaaatgat ggaaaacgta
    11881 gaaattgagt atgatatcgt aataccgcaa tcagaaatcg catatttaac acagatgatg
    11941 ctctcaaacc aggtggaaga aaattaagaa aaaggaatct gccaagtgtg tattgtctta
    12001 cacacttggc ttttttactt gtgtaagcga aaaactttgt aggcaagcaa caaattagaa
    12061 gaaaagttgg cacatatctt gcatattata tatacgtgca gcttttcaaa ctaggaggtt
    12121 aagttaatga ataacatcat gttagtttgt tcggccggta tgtccacaag tctgctcgta
    12181 aaaaaaatga cagaagctat cgaaaaacaa caagtggatg ctgctgtaat agcagttgca
    12241 gaagctgatt tcgacaagta taaaggcaac gtagatgttg ttttactcgc accacaagtt
    12301 cggtttttag agaagaattt gaagcgagta ctggatccat taggtattcc agttgcgatc
    12361 attaatggaa ttgactatgg aacaatggac ggcgaaaaag tgctaaatga tgcactagca
    12421 atgattgaga aataatctcg agttcgagac tgcttgaaga ggaattaaac acaagttcga
    12481 taaatgaaaa aggatgtgta aacaatggaa ttagaacaaa caattatgca attaatcgta
    12541 cacgggggaa acgctaaaag tgacgcaatg ctagcaatcg aagcggcaaa aaaaggggat
    12601 tttgacgcgg cagatgagca aatcaaaagt gcagaagcag cactacttga agcgcatcat
    12661 tcacaaactt cattaattca aggggaagca cgcggcgaaa aagcagaagt atctttacta
    12721 ctagttcacg cacaagatca cttaatgaat gctattactt ttaaagattt agcaaaagaa
    12781 attgttgatt tataccgttc taaataagct tttgaaggga tgatttaaat gagaaaatta
    12841 ggaatatccg tatttccgca acacgtagcg cttgaagaat cattagaata tattgaaaca
    12901 gctgcaaaat atggttttag ccgtatcttc acttgcttga tttctgctaa tgatgaagct
    12961 gaatttgcta aattagaaac catttgcaaa cgcgcaaaag aattaggatt tgacgttatt
    13021 gctgatgttg atcctactgt atttgaatcg ttaaatatca cttataaaga attagatcgt
    13081 ttcaaagagc tgggtctagc tggattacgc ctagatttag gtttctctgg ttccgaagag
    13141 gcagcaatgt cctttgatga tacggacttg aaaatcgagc taaacattag taatggtact
    13201 cgctacgttg aaaatatcct atcttaccaa gcaaacgtag gaaatatcat tggttgtcac
    13261 aacttttatc caagaaaata caccggtctt tccagagagc atttcttgcg cacgagtaaa
    13321 caattcaaag acttaaacct acgtacagct gctttcatat cttctaacag tggcgaattt
    13381 ggcccttggt ttgttgtaga cggcggactt ccaacaatgg aagaacatcg cggagtggac
    13441 attactgtgc aagcaaaaga cctttggaac actggcctga ttgatgacgt catcgttggg
    13501 aacatgttcg cttcagaaga cgaattacgc gctttaagcg aattaaaccg taatgaatta
    13561 caattagcag tagagttttt agacggtgca acagacgtgg aaaaagaaat cgttttaaca
    13621 caaaaacatt tcaatcgtgg cgatgcttcc gagtatgtgt tacgttcaac aatgacgcgt
    13681 gttaatttca aacaattcga tttccctgca cacgacacaa atactattgc aaaaggcgat
    13741 gtgactatcg ataacgacgg ctacgaacgc tacaaaggcg aaatgcaagt agcacttcaa
    13801 gaaatggaaa actccggcaa caccaatatc gttgctcgaa ttgttccaga agaacgttat
    13861 ctactagaca ccattctacc gtggcaacat tttagattgg ttgagaagaa gaaataataa
    13921 aaattacaag ttaaaaaacg tctgcaatcc atttttcaat gttgattgca gacgttttat
    13981 tttgtcgaaa attaatatgt tgcttgattt attctttaca tttcccaatc aacccataca
    14041 aaaacaactg cactatctcc gcttgtttct cctcaagttc ttcctctggg actgtgaaac
    14101 ctaaaccatt aattgcttca ataaaaagtt gaatagattg atccgaaaga cggttatcaa
    14161 taattttttc ttgcttgccg atagcgatgt atttcatata aatctcattt ttaagtgcat
    14221 taatattatt cactaacagc gtgataaatt gcgcgtcttt gcttgcttct tgcgatataa
    14281 atttacttaa agacagattt atttctgcat tacagagctg gagagcccgc tctaattttt
    14341 gcgtgaatgt tccttctgat gctaaaattt cttccgctaa agttatggta tcttgcataa
    14401 taatgctagc acattcacca acaagcgctt ctttacttcc aaaataatta taaatagaca
    14461 cttgcgaaac atctgcgagg gcggcaatat ctttaatact tacatcagaa aaaccttgtt
    14521 ctccaaataa tgaaagagct gcctgaataa ttgcagtctt cttttttagc gttctttttt
    14581 cataattat
//
LOCUS       DASDXX010000056        14334 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.056, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000056 DASDXX010000000
VERSION     DASDXX010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14334
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.056"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(69..1829)
                     /locus_tag="U0280_001320"
     CDS             complement(69..1829)
                     /locus_tag="U0280_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEM2271271.1"
                     /translation="MTAKITEKTLFSPSFEYVDNGIEHGVLSPFETKEIILEKGQQIA
                     EGFKPLDCSIKMLKDVPVKMRDGITIYTDIYLPITEEKVPTLIAWSPYGKSAGTAPRY
                     KNLFNMLGMGNAWNSGLTKFEAPDPAYWCAHGYAVCNPDMRGIAHSEGNTTMIGSQEA
                     EDGYDLIEWLAKQSWSNGKTALTGTSYLAFSQWYIAAEQPPHLTCINPTEGLADGYRD
                     LAFIGGIPDPNFIERLQINHVSAKNSQREDLTKEMEAYPLADSAIWKDKVADPSKITI
                     PAFVIASYSNTLHTMGTFRSWRSLGSKEKWLRIHDRQEWPYYYDENNVEELRRFFDYY
                     LLGKENNWTDTPTVRYALIDFQGGNQTDLPSEVFPPTNSENKRYYMNGLLRTLQETPT
                     SDDFKVSYTTENLPGRASFQMTFDKETHFVGYPKAKLFMEVDGYDDLDVFVWLQKLDK
                     FGNVLSEFVVPNHGAALQDFTQEGASALRYKGAWGRLRASMRQLDSQVSTDEIPAYSF
                     DKVEKLSSGEIVELDIILSPIGLTYKAGETLRVVVSSKDELGSVMPGTPGCTPNNKGM
                     HILHTSKEHPSYIQLPIINK"
     gene            2021..2614
                     /locus_tag="U0280_001321"
     CDS             2021..2614
                     /locus_tag="U0280_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2271272.1"
                     /translation="MKKLLFLGDSVTDAGRDFENDRELGHGYVKIIADQLEQEDVTVI
                     NRGVSANRVADLHRRIEADAISLQPDVVTIMIGINDTWFSFSRWEDTSVTAFKEVYRV
                     ILNRIKTETNAELILMEPFVLPYPEDRKEWRGDLDPKIGAVRELAAEFGATLIPLDGL
                     MNALAIKHGPTFLAEDGVHPTKAGHEAIASTWLEFTK"
     gene            2800..3759
                     /locus_tag="U0280_001322"
     CDS             2800..3759
                     /locus_tag="U0280_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEM2271273.1"
                     /translation="MQKEKAPIGLYFLLIAVMASWGFNVTMTKVLVSYFPTVTMTSFR
                     IFTAAITVIIILFITKKLRLPTKWEFGLIFLASIFNIVIHHFFLSNGLKLTTGTNAGL
                     ILGSAPIVVAIFSVVFLRERIGAWRALGFLAGIFGVSLVVLSNGTGISGISLGDIDIF
                     IAMASQAFSFIIIKKLAGSMDTGLMTGYMLFLGSVMLFGLSRFMEPGGMSELVAVHSW
                     KLWLLFVVSAVVATAFGNFVYNYAVGKIGPSRSAIFMNFNPLFSLIGALLFLGEAIKI
                     PQLVGFGFIIIGVLLGSGALMDLIYERKKTKVRDPEKLLEKEV"
     gene            3834..4058
                     /locus_tag="U0280_001323"
     CDS             3834..4058
                     /locus_tag="U0280_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HEM2271274.1"
                     /translation="MKLLLKNINELAAKQKSEGLTAFEKERQAALRQEYLKKIRGTVQ
                     DNLHHVTIIDPLGDDVTPKKLKEIQAELRG"
     gene            4225..4674
                     /gene="rpiB"
                     /locus_tag="U0280_001324"
     CDS             4225..4674
                     /gene="rpiB"
                     /locus_tag="U0280_001324"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2271275.1"
                     /translation="MEIAIAADHGGFQLKEKIRAHLIESGYTVKDFGCYSLESVDFPE
                     YAAKVGHFVATENSLGVLCCGTGIGMSMAANKIKGVRAAVVSDAFSAMMTRRHNNSNV
                     LCLGERVLGDSLALLLLDTWLAAEFEGGRHNTRLAKLAELEEPEEDK"
     gene            4671..5339
                     /locus_tag="U0280_001325"
     CDS             4671..5339
                     /locus_tag="U0280_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2271276.1"
                     /translation="MKMIAASIMCSDSLHLADELRALEQANVKMLHCDVMDGVFVENA
                     AMGAYVLQDIKNNTDMLLDIHLATVNPDKFVDLYAAIKPAYMSFHVEASPDVDATIKH
                     IRALGIKPSIAISPDTEIEQIYPFLDKVDMVLMMTVNPGFAGQKFQHHVLEKIKKLQR
                     ELESHTNKPLIEVDGNIFEETVRLLEPIGADVYVVGTAALFNDKAGSYTEKLAPLREI
                     IQER"
     gene            5346..5996
                     /locus_tag="U0280_001326"
     CDS             5346..5996
                     /locus_tag="U0280_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TalA family protein"
                     /protein_id="HEM2271277.1"
                     /translation="MHLDSANLEDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRI
                     LELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDK
                     TIQILGTAIYSADQAIAAALAGADFVAPYVNRMSAANIDPFKEIAGMRHFFDKKALKT
                     QIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDATLYEK"
     gene            6104..8164
                     /locus_tag="U0280_001327"
     CDS             6104..8164
                     /locus_tag="U0280_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2271278.1"
                     /translation="MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVN
                     EWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLT
                     AKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKV
                     LTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYL
                     LSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLT
                     TNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIK
                     YQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQ
                     NDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFS
                     SIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKD
                     PNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPL
                     LLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYF
                     SETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKVMQTINQLVI
                     REDE"
     gene            8168..8770
                     /locus_tag="U0280_001328"
     CDS             8168..8770
                     /locus_tag="U0280_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2271279.1"
                     /translation="MDKQAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECT
                     GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGG
                     NTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTM
                     AVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK"
     gene            8798..9265
                     /locus_tag="U0280_001329"
     CDS             8798..9265
                     /locus_tag="U0280_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2271280.1"
                     /translation="MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDA
                     VIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVR
                     IVFMMALRSADEQLDMLQTLIHLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN"
     gene            9282..9680
                     /locus_tag="U0280_001330"
     CDS             9282..9680
                     /locus_tag="U0280_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271281.1"
                     /translation="MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMFVVMIYATTILY
                     AKWTLAYYLPKKMNQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNA
                     PESTKLLHFSQQKLKLSDKEKLQKIIEIQS"
     gene            9691..10341
                     /gene="rpe"
                     /locus_tag="U0280_001331"
     CDS             9691..10341
                     /gene="rpe"
                     /locus_tag="U0280_001331"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2271282.1"
                     /translation="MAKIVPSVFGADIGRINEQLEVLEKNGIDLLHVDMMDGSFVPNI
                     AFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQL
                     IKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKA
                     YIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE"
     gene            10338..11384
                     /locus_tag="U0280_001332"
     CDS             10338..11384
                     /locus_tag="U0280_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HEM2271283.1"
                     /translation="MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISR
                     YSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFAR
                     CRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQA
                     GDDVVVVGSGNIGLLAIQWAKVFGAKRVIAIDVDDKKLALAKEVGADVVINSLKEDPL
                     EVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKI
                     VRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIY
                     ERNEFFGKVLFFPE"
     gene            11400..11693
                     /locus_tag="U0280_001333"
     CDS             11400..11693
                     /locus_tag="U0280_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271284.1"
                     /translation="MKKKKIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQE
                     VASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQEAIDEILAILQD"
     gene            11708..12979
                     /locus_tag="U0280_001334"
     CDS             11708..12979
                     /locus_tag="U0280_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HEM2271285.1"
                     /translation="MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLT
                     VGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVF
                     VAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAILSSIINMAIIF
                     KIADWTQKDVENVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQS
                     RLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVI
                     SEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPL
                     ADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIP
                     KDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL"
     gene            13119..14054
                     /locus_tag="U0280_001335"
     CDS             13119..14054
                     /locus_tag="U0280_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEM2271286.1"
                     /translation="MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKIN
                     IEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKA
                     RSREPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENY
                     GEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVV
                     DDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDL
                     PEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF"
BASE COUNT         4547 a         2520 c         3063 g         4204 t
ORIGIN      
        1 tccattcaat gaaagattgt aaatagtagc tttagtataa agttattaga ctccattgac
       61 aagcttttct atttgttgat tattggtagc tgaatatagg atgggtgctc tttactcgta
      121 tgaaggatat gcataccttt attattaggt gtgcatccgg gcgttcctgg cattactgag
      181 ccaagttcat ctttgctact cacgactact ctgagtgttt cacctgcttt ataagttaga
      241 ccaatgggac tcaaaataat gtctagttct acaatttctc cggaagagag tttttctact
      301 ttgtcaaagc tataagcagg aatttcatct gttgaaactt gagaatctag ttgtcgcatg
      361 gatgcgcgaa gtcttcccca agcgccttta tagcgtaaag cagatgcccc ttcttgtgtg
      421 aaatcctgaa gtgcagcccc gtgatttggc acgacaaatt cacttagtac gttgccgaat
      481 ttatctagct tttgaagcca aacaaaaaca tccaagtcat cgtatccatc tacttccata
      541 aataattttg cttttggata accaacaaaa tgcgtttctt tgtcaaacgt catttggaac
      601 gatgctctcc ctggcaagtt ttcagtagta taggatactt taaaatcatc tgaagtaggt
      661 gtttcttgta aagtacgtaa taggccattc atataataac gtttgttttc actattggta
      721 ggtggaaaaa cttcggatgg taagtcagtt tgattgccac cttgaaagtc aattaatgca
      781 tagcgcacag ttggtgtatc tgtccaatta ttttccttgc caagtaaata ataatcaaaa
      841 aagcgtcgca attcttctac gttattttcg tcatagtaat atggccattc ttggcgatca
      901 tgaatacgaa gccatttttc tttagaacca agtgaacgcc aagaacgaaa tgtacccatt
      961 gtgtgaagcg tattagaata acttgcaata acaaaagctg gtattgtaat tttacttgga
     1021 tctgcaactt tgtctttcca aatagcacta tcagctaaag gatatgcttc catttccttt
     1081 gttaaatctt ctctttgcga atttttagca ctgacatggt tgatttgcaa acgctcaata
     1141 aaattaggat ctggaatgcc tccaataaaa gctaagtcac gataaccatc tgctaatcct
     1201 tcagtaggat tgatacatgt taggtgaggg ggctgctcag ctgcaatata ccactgggaa
     1261 aaggctaaat aagatgttcc tgttagagct gtttttccat tactccaaga ttgcttagct
     1321 aaccattcaa ttaaatcata gccatcttca gcttcttgag agccaatcat tgtagtatta
     1381 ccctcactat gagcaatgcc acgcatgtca ggattacaga cagcgtatcc atgtgcgcac
     1441 cagtatgctg gatcaggtgc ttcaaattta gtaaggccag aattccaggc attccccatt
     1501 cctagcatat taaatagatt tttgtatcga ggagctgttc cagcactttt tccataaggg
     1561 ctccaggcga taagagtagg aactttttct tctgttattg gtaaataaat atcggtataa
     1621 atggttatac cgtcacgcat cttaactggt acatctttta acattttaat ggaacaatcc
     1681 agtggtttga aaccttcagc aatttgttgt cctttttcta aaatgatttc ttttgtttcg
     1741 aatggactta gcactccatg ctcgatgcca ttatccacgt attcaaaaga agggctgaaa
     1801 agcgtttttt ctgttatttt tgcagtcata taaattacct ccgattattt ttttaataag
     1861 ttttaacact tttaagtata ggtagtatcg cgaggtctgt acaattgtaa ttttggataa
     1921 tctctcctaa aaaaataagc tatgcaaaaa atgaatacaa ctaaattgaa gtttttttgt
     1981 tataataagg catcaggaat tttaaaggag acggaactaa atgaagaagt tgcttttttt
     2041 aggtgatagt gtgacagatg cggggcgaga ttttgaaaat gaccgcgaat taggacatgg
     2101 ttatgtgaaa ataattgcag accagcttga gcaagaagat gtaacggtta taaatcgtgg
     2161 cgttagtgcg aaccgtgtgg cggatttgca tcgtcgtatt gaggcggatg caatttcact
     2221 tcaaccagat gtagttacga ttatgattgg gataaatgat acgtggttta gttttagcag
     2281 atgggaagat acttcggtga cggcgtttaa agaagtgtat cgtgtgattt tgaatcggat
     2341 taaaacagaa acaaatgcgg aactcatttt gatggagccg tttgtattac catatccgga
     2401 agatcggaaa gagtggcgtg gtgatttgga tccaaaaatt ggagctgtgc gcgaacttgc
     2461 ggcagaattt ggtgcaacgc ttattccgct tgatgggcta atgaacgccc tcgctatcaa
     2521 acatgggccg acctttttag ctgaggacgg ggtgcacccg accaaagcag gacatgaagc
     2581 aattgcctct acttggttag aatttacaaa ataacgcttt acagaaaaaa ttatccatgc
     2641 tatagttggg tctatgcgat gagcctacaa gcagtgactt aagtatcact gccccatttt
     2701 ccgcgttata gctttgtgga aggctgcgga agatgacgct atgaaatgcc ccttaaagta
     2761 atttaagggg catttttcta taaaaaagga gtgtttgttt tgcagaaaga gaaagcaccg
     2821 ataggacttt attttttatt aattgcagtg atggcgagtt ggggttttaa tgtcacgatg
     2881 acgaaagtat tagttagcta ttttccgact gttacgatga catcttttcg aattttcacc
     2941 gcagctataa ccgttattat tattttattt atcacaaaaa aattacgtct gcctacaaaa
     3001 tgggaatttg gtttaatttt tctcgcgagt atttttaata ttgttattca tcattttttc
     3061 ttgtcgaacg ggttgaagct gacgactggg acgaatgctg ggcttattct tggttctgcg
     3121 ccgattgtgg tggcgatttt ttctgtggtt tttctccgtg aacgaattgg agcttggcgt
     3181 gcgctcggct ttttagcagg gatttttggc gtgagtttgg ttgttctttc aaatgggacg
     3241 gggataagcg ggatttcact gggagatatc gacatcttta tcgcgatggc ttctcaggca
     3301 tttagtttta ttattattaa aaagctcgct ggatcaatgg acacggggct gatgactgga
     3361 tatatgctat ttcttggttc ggttatgttg tttggtttaa gtcgcttcat ggagccgggt
     3421 ggcatgtcag aattagtggc ggttcattca tggaaactgt ggctcttgtt tgttgtttca
     3481 gctgtagttg caacggcatt tggcaatttc gtttataatt atgcggttgg gaaaattggg
     3541 ccgtcacgct cggctatttt tatgaatttc aatccattat tttcactaat tggcgcatta
     3601 cttttccttg gagaagcaat taaaatcccc cagctagttg gcttcggttt tattattatt
     3661 ggcgtcctac ttggttcggg cgcattaatg gatcttattt atgaacgcaa aaaaacaaaa
     3721 gtacgcgatc ctgaaaaact gctcgaaaaa gaagtttgac ttttgttgac ctttatatta
     3781 taatttggtt agttacttat taaaagtaac tagataatga taggagggat agcatgaaat
     3841 tgttattaaa aaatattaat gaacttgctg caaaacaaaa aagtgaagga ttaactgctt
     3901 ttgaaaaaga aagacaagct gcccttcgtc aagaatattt gaaaaaaatt cgaggaactg
     3961 ttcaagataa cttacatcac gtaacaatca ttgatccact tggagacgac gtaactccta
     4021 aaaaactaaa agaaatccaa gccgaattaa gaggctgata taagtcatag aaggttgaaa
     4081 gagctcattg ctttttcagc ctttttttgt tgatagagct aatttaccat cttgcggatt
     4141 cgagtagaga aaaatggtgc cgaacagttc taacagtttg aggaaggccg gtgctacaat
     4201 caaggtgaga aaggagagga taacatggaa attgcaattg cagctgacca tggcggattt
     4261 cagttgaaag aaaaaatccg cgcgcattta attgaaagcg gctacacagt aaaagatttt
     4321 ggttgttatt cattagaaag cgtggatttt ccagagtatg ccgctaaagt aggacacttt
     4381 gttgcaaccg aaaacagttt aggtgtgctc tgttgcggaa cagggattgg aatgtctatg
     4441 gcagccaaca aaataaaagg tgttcgtgct gctgttgttt cagatgcttt ttcagcaatg
     4501 atgacgaggc gacataataa tagtaatgtt ctttgtcttg gtgaacgtgt tctgggcgat
     4561 agtctggcgt tactcttact tgatacgtgg cttgcggcag aatttgaagg tggaagacat
     4621 aatacaaggc tcgcgaaatt ggcggagctt gaggaaccgg aggaagataa atgaaaatga
     4681 ttgcggcttc cattatgtgt tcagactcgc ttcatctcgc tgacgaactt cgcgcactcg
     4741 aacaagcaaa tgtaaaaatg ctccattgtg atgtgatgga tggtgttttt gtagaaaatg
     4801 cagcaatggg cgcctatgtc cttcaagata taaaaaacaa tacagatatg ctactagata
     4861 tccacttagc tacagtgaac cctgataaat ttgtggattt gtatgcggcg ataaagccgg
     4921 cttatatgtc tttccacgta gaagcttcac ctgatgtcga tgcgactata aagcatattc
     4981 gtgcgctagg aatcaaaccg tccatcgcca tcagcccgga tacagagatt gaacagattt
     5041 atccattttt agataaagtc gatatggttt taatgatgac cgttaaccca ggattcgccg
     5101 gacaaaaatt tcagcatcat gtcctagaaa aaatcaagaa acttcaaaga gagcttgaaa
     5161 gtcacaccaa taaaccatta attgaagtag acggtaatat ttttgaagaa acagttcggt
     5221 tgcttgaacc aattggcgca gatgtctatg tcgttggaac agccgcatta tttaacgaca
     5281 aggcaggtag ttatacagaa aaattggcgc cactcagaga aattatccaa gaaaggtgag
     5341 ggaaaatgca tttagattca gctaatttag aagacgtgaa aaaaattcaa gccagctcca
     5401 tttttaaagg aattacaacg aacccaacca ttttagtaaa agaaaaatgc aatcgacaaa
     5461 cagcgattaa tcgtatttta gaacttacgg ataaacaagt ttttgtacaa acagttggtt
     5521 ttagctatga ggaaattttg gcagatgcgc gcatgttact agcgatgttt gggaaagaaa
     5581 aaatagctat taagattccg gcacatgagg ctggtattaa tgtgattgat acactcaaaa
     5641 aagaggataa aaccattcaa atcttaggga ctgctattta ttcggctgat caagcaatcg
     5701 cggctgcctt ggctggtgca gattttgttg ccccatatgt gaataggatg agcgcagcga
     5761 acatcgatcc ttttaaagaa attgctggga tgcgtcactt ttttgataaa aaggcactta
     5821 aaacacaaat tatggcagcg agctttaaac atagcgggca agtaatgcaa gcttatgaaa
     5881 gtggcgcaga tacggtaact attccttatg aaatttattc gcaaatgacc aacaaagttt
     5941 tagcagtaga agcaattcgt gtctttaacg aagatgctac attgtacgaa aagtaacaat
     6001 ctccttctca tgttgtggaa gtgtgtggag aaaacttgtg atgaaagcgc attcttaagc
     6061 gccaaaccct atgctataat taggctatca aagggggaga cgcatgtatc tggataacag
     6121 aagtaaaaca ctatttcaag aagttataaa aaatccgaac attacaaata aacaactcga
     6181 agtaaagtat aaattatcgc gttaccaaat cagctatagt tttcagaaag taaacgaatg
     6241 gctcaagtgg aaaaattatc cagaagtaaa gcgttccaaa aacggccgat ttatattaga
     6301 acccgagctt acagcgctat tttctgagaa agaaactcga gatccgagcg tagaatactt
     6361 accttctgaa aatgaacgtg ccaatttaat tttgctaatg cttttaacag ccaaagaaga
     6421 actatccctc gcccatttta caacgaagat tcaagtaagc aaaaacacca ttcttcgtga
     6481 tttaaaagta gcgcaaaaat tacttcctaa agaaacaact gtcacttata gtagagcatc
     6541 gggttatcag ttagcaggga gtgaatggga acttcgcaag gttctgacac aagttgtaag
     6601 tagtgtgaaa gagatgttcc gaggagagca ctatttccta tcgtattcag gaattgaaaa
     6661 agtccaacta atggaaattc gccgcacact cgaagaagca gaagcgatga tgcaaataaa
     6721 attcacctat gagcaaatcg aattattacc ctatttgcta tccgtgatgt tcttaagaat
     6781 cagagaccgg cgcttaatcg acactgcttt tcatattgac gagaaatcac tttcagacac
     6841 gcgagaatac cacatcaccg atattttgct cgaaaaaact ggcccagttc cagaacaaga
     6901 gcgacttttc atcacattac aacttcttac aacaaacatt ttttccggcg aaattttaac
     6961 tgaaaaatta acagaagact tggaaaaagt tgtcctcaca tgcttagact tattcgagaa
     7021 aaaagcactt gtttctctta aaaacaaaca tatcttaatc gaaaaattac tcttacattt
     7081 aaaaccagcc tattaccgga ttaaatacca aatgaattta gaagatacgc tttatgaaaa
     7141 attcaaccaa gaattcgaag cgttaaactt cattgtgaaa gaagcatttg acccacttgc
     7201 gaaatttatt ggtcgcgaaa ttccagccgg cgaaattttc ttcatttctt tgtttattgg
     7261 gagcgacatg ataccgcaaa acgatattta tcataaacaa aaacgtgcga ttgtgctttg
     7321 tccgagcggg gttacttttt caaaaatcat ggaaaatatt ttagtgaaac tattcccgga
     7381 aatccatttt tatccaacta tatctgttcg ggaatatgcc ttttttaaag cagaagttga
     7441 tattgttttt tcatccattc cgttaaaaga tggcgaaaat gtctttgttg ttcagccatt
     7501 tatgaatgat atcgaaaaaa cgcaactgcg gcaacacgtc ttgcaaaatt tatttggaat
     7561 gggaaaccag ctcacgagta ttgataaaat catggaagta gtggaacgta acgccgatat
     7621 aaaggatccg aatgcaatac gagatggaat tattgatatt ttgtcggcta acacagctac
     7681 agatgaaaat aaacgcgtga aaaaagtcta tttacatgat ttaatcaccg aagataacat
     7741 catgatttgt gaggatgtta aaaactatca agaagcgatt cgtctagcaa gtcagccgct
     7801 gttactacaa caagcaatta cagcaaacta tgtaaagacc atgattgata accataagtt
     7861 ccacgatccg tacattatta tcggtgaaga tattgccatt ccacacgcta tgcctaatgc
     7921 gggggtgaat cgactcgcta tgtctctttt agtcgtgaaa aatggcgtat atttttcaga
     7981 aacagagcaa gttcatttcg taatagttat cgcaccagtg gataaagagc aacacattga
     8041 agcactttac caaatcgttc atttagccga aaatcaccaa attttagacg atttgctcga
     8101 aaatgtaacc aaagaaaaag tcatgcaaac tatcaaccaa ttagtaatta gagaggatga
     8161 ataaattttg gataaacaag ctattttaga taatattcac caaacatggc aagaagaagc
     8221 aaacgcgatt tcccgtttgc cggaagtaac aagtgaagag gctctcgtta aaacggttga
     8281 aaaaatcgcc gagtgcactg ggaaaattgt cgtagctggt tgtggaacat ccggcgtcgc
     8341 tgcgaaaaaa ttagtacact ctttcaactg tatcgaacgt ccagcagtct ttttaacacc
     8401 atcagatgct gtgcatggaa ctctcggtgt acttcaaaaa gaagatatat tgattctcat
     8461 ttcaaaaggt ggaaatacag gcgaattact taatttaatt cctgcttgta aaacaaaagg
     8521 aagcacactg attggtgtaa cagaaaaccc agattccgtt atcgccaaag aagcagatat
     8581 ctttttccca gtgagtgtaa gcaaagaacc agatccgttt aatatgttag caacggcaag
     8641 tacaatggct gttattgcaa gttttgatgc agttattgtt tgcttaatga cctatatgaa
     8701 ttatacaaaa gagcagtttt ccgtcatcca tcctggtggt gccgttggaa acaaattatt
     8761 aaataaataa acaagcagcc agtcggaggg atgcaatttg gatgtattag aatattttaa
     8821 agaagaaatg gttcgatttt caaacgaaca agataaagaa aaattactta cagaaatggc
     8881 ggaacagttg tgtgaagtgg gcgcagtaaa gccaagctat aaagatgcag taattaaacg
     8941 ggaaaaagtt tttccaaccg gattactaac cgcgcacgcc ggggttgcca ttccgcatac
     9001 agatagcgaa catgttattc ggccagtggt ggctgtacga atactcaaga agcccgtttc
     9061 atttattgaa atggcctctg ataacgaagc aatcgatgtc agaattgtct ttatgatggc
     9121 gctaaggagt gccgatgaac aactagatat gctgcaaaca cttattcatc ttattcaaga
     9181 cgaggaggtg atgacgacct tacttaaagc gcaagagacg ggagatgttc tttccgcaat
     9241 agaacatttt tctaagaata attaagggag gtcgggaata gatggggagt ttttttgcaa
     9301 gttttgtaga ctggctaata ggaagtccag gtagatttgt cgttaactta attgaagata
     9361 atatgttaat tttcatgttc gtagtaatga tttacgccac caccatttta tacgccaagt
     9421 ggacactcgc atactactta ccgaaaaaaa tgaatcagtt agcagaaatg aaaacgtggg
     9481 agctggacga attatatgca gcgtggcaaa cagagaaaaa agctctaccg tggtacattc
     9541 tcgtgccaag ccgaaatgaa ttttgggtaa aatcagcccg aaatgcacca gaatcaacta
     9601 aattactcca ttttagtcaa caaaaattaa aactaagtga caaagaaaag ttacaaaaaa
     9661 tcatagaaat tcaatcttga ggtgataata gtggcaaaaa tagttccgtc tgtttttgga
     9721 gcagacatcg gcagaattaa tgaacagtta gaggttctag agaaaaatgg cattgattta
     9781 ttacatgtgg atatgatgga tggctcgttc gtcccgaaca ttgcttttgg tccagatcaa
     9841 atcaaaatga tgaaaaaagg cacgaagctt caatttgatg ttcatatgat ggtgtatgaa
     9901 ccagaccgtt atattccaag attagtggaa gcaggcgcac atatgattac agtccaccaa
     9961 gaagcaacaa ctcatttgca tcgtacaatt caactaatta aaagttacgg agttcgcgcg
    10021 ggagtggtat taaatcctgg tacaccacca agcactttgg aatacgtgtt agatgatatt
    10081 gactgtattt tgcttatgac tgtaaatcca ggcttaggtg gtcaaaaatt cttccaatca
    10141 agtttagaaa aaatcagaaa aaccaaagca tatattggaa atcgtcctat tcaaattgaa
    10201 gtagatggcg gagtaaatgc tgaactcgcg aaagaatgca cacttgcagg cgcggattta
    10261 atcgttgtag gatcttactt atttgaagga gatatcgaag cgaatttgga gaagttatcg
    10321 aaaggagttt taacagaatg aaagctttaa aattatatgg aaaaagagat ttgcgttatg
    10381 aagaagcgga tatgccaaca atcgaacagc cagatgatgt gattttgaaa gtgaaaacgg
    10441 ttgggatttg cggatctgat atttcgagat acagtaaact tggtccgtat gtaccaggaa
    10501 tggtgtgggg acatgaattt tcaggagaag tgattgaggt tggtagtgag gttacagata
    10561 ttgagattgg tgatagggct gccggatgcc cagcactcta ttgcggagag tgtgaatact
    10621 gtaaaaaagg cgaattcgcc cgctgtcgga agctaacagt aatcggagca agacatcccg
    10681 gagcctatgc tgagtatatc aaacttccag cagaaaatgt agtaaaaata ccagacgaat
    10741 tagattatga agctgctgca cttgtcgagc cttccgcagt ggtcgttcat gggttttatc
    10801 atacgaaatt acaagcaggc gatgatgtcg tcgttgtcgg aagcggcaat ataggtttgc
    10861 tagcaattca atgggcaaaa gtttttggcg caaaaagagt tattgcaatt gatgtagacg
    10921 ataaaaagtt agctcttgca aaagaagtag gagcagacgt cgttattaat tctttaaaag
    10981 aagatccatt agaagtagtc gcagcacata cagatggtct aaacgctgat ttagttgtag
    11041 aagctgctgg atcacctatt acatctgccc aagtttttgc ctatgcgaaa aaaggtggag
    11101 gcgtcgtttt cctagggatt ccatacgccg atgtaacaat cgaacgtttc tattttgaaa
    11161 aaattgttcg gagtgagctt actgtttggg gctcatggaa tgcaatttct gcaccatttc
    11221 caggaaaaga atggcaaaca accattcact tcttagctaa taaacaaatc aacattgaac
    11281 caatgattac acatcgtctt tcacttgctg aaggaccaga agtttttgag cgaatctatg
    11341 aaagaaatga atttttcggg aaagtattat ttttcccaga ataatagggg gattttagga
    11401 tgaaaaagaa gaaaatttat gtttgttgtg ggactggaat tgcaacttcc actgttattt
    11461 ccaaaaaagt gcgtgcggta ctagacgaaa agcgcattcc atatgaaatt agtcaatgta
    11521 cggttcaaga agtagcgtca aaagtaagca catctaagcc agacattatt gttagttcaa
    11581 caacagttac aggtgatgtt ggtgatgtac cagttgtcat tggaagatca tttttaacag
    11641 gcctaaaaaa acaagaagca atcgatgaaa tactcgcgat acttcaagat taaagggagg
    11701 gcacaaaatg gatattattc tagatttctt taaatatatt atcgggcttg gtgtaacagt
    11761 tatgatgccg attatcatta ccattctagg tgtgattttc cgcaaaaaaa ttagtgtagc
    11821 ttttaaagcg gggctaacag ttggtgttgg gtttgttgga ctaggcgtta tcacttcact
    11881 catgttaacg actattacac cagttacaaa agcacttgta gaaaattata attttaaatt
    11941 aaccgcaacg gatatcggtt ggggagttgg gtcatcactc gcatggggaa cagaagtcgt
    12001 accatttgtt ttcgtcgcaa ttattgcaac caatatttta atgattgcct ttaaatggac
    12061 gaaaacaatg gacgtagata tttggaatta ctggcaacca cttttcatcg ccagtgcact
    12121 ttacttaaca acaggaagca tgattattgc gattcttagt tcgattatca atatggcaat
    12181 tatcttcaaa atcgctgact ggacacaaaa agatgtggag aatgttttag gattagaggg
    12241 gatttcttta ccacaaattc aaactaccgg gtgggcgctt gttggttatc caatgaactg
    12301 gctactcgga aaaattcccg gcgttagaaa aattaattgg tccacagaga aagtgcaatc
    12361 acgtttaggt attttcggcg aaccgatgct tatgggctta attattggtg gtggacttgc
    12421 tgccattgct caaatgccgc tgagccaagt actgcaaacc ggagtaacga ttgccgctag
    12481 tttagtactt attccgcgga tggtttccct tctaatggac ggtcttacgg ttatctcgga
    12541 agctgcccat gaattcatgg aaaaacgttt cccaggtcgc gaactattta tcggactaga
    12601 ttcagcggtg gggattggtc atccatttgt gctttcgctt ggcttactca tgattccgat
    12661 tactttgatt ttagcgttca ttttgccagg aaataaagta ttacctttag ctgatttaac
    12721 ggcgcttcca ttctacatga tttttgctat tgttccatcc aaagggaatt tatttagagg
    12781 gattttcaca ggtatcgtta tcgtcattat caccctctac ctatcaggag cagcggcacc
    12841 tttaatgaca gaacttgcag gtcaaattgg ttataatata ccgaaagacg ctgtagaagt
    12901 aacctctcta gcagttggga ctcagtggta tacgtggatt gtatattacg gacttcattg
    12961 gttcggaggt attctataat tgcaatttaa tgaaacaagc attagtttgc gctaatgctt
    13021 gttttatttg gactaatgat ttttagctag tagacaacac attgacagtt ctatataata
    13081 ataaggagaa gaaattagta cggcggaagg agatagcaat ggcaggcaaa atgaaacttt
    13141 tttctgtgac gagtgagaga ccacttgcga caaaaattgc agattatcta gatatacctt
    13201 tatgtgaggt ggagctccag aagttcagtg atggagaagt gaaaattaat attgaggaaa
    13261 gtatccgtgg aacgaatgcg tatgttgtgc aatcaatgaa ttccaacgta aacgaacgtc
    13321 taatggaact tttaatcatg gtagatgcct taaaacgcgc ttccgtgcat tccatcaata
    13381 taattatgcc ttattatggc tatgctcgtc aggacagaaa agctcgctca agagaaccaa
    13441 ttaccgccaa attaatggca aatctaattc aaagagctgg agccgaccgt ttaatcacag
    13501 tagatttaca cgcagctcaa attcaaggct ttttcaacat tccaatcgat catctttcag
    13561 caattccgct aattggtgat tatttgatag aaaattacgg tgaaaaagac gtggtagttg
    13621 tcgcgccgga tcacagtggc gtagttcgcg cacgcagaat cgcggaccga ctaaacgcgc
    13681 caatcgccat tttaaaccgt aaaccaagac cacatgaaga cgaaattatg agtgtcattg
    13741 gcgatgtgaa aggcaaagtc gcaatcgttg tcgatgatat tatcgatacc ggcgtccgtg
    13801 ccactacttc agctgatatt ttacttgaaa aaggtgccgt agaagttatc gcttgcgcaa
    13861 cccactccgt catggcagga aatgcaaccg aacgcttaca aaattccaat atcaaagaag
    13921 tcatcacatc ggactccatc gatcttccag aagataaaca attcgacaaa ctaacaacca
    13981 tctccatcgg acgaatctta ggccgcgcaa tcgaaggcgt acaagaaaac cgctcgttgc
    14041 atccgttgtt ttaaagaata agcaaaaaac agtaacttag tagagttgct gtttttttgt
    14101 tatctgtcga ccttgagtag cgtgaaaaac accgggaatc gtcagaaata gctctttgag
    14161 gtaagatggg agtaagaaga aaagttagcg ggttttagct acttattttg aaatgtaaat
    14221 ggactcctca gtcatgatga agggattacc tttgaaagtt ttagttactt aatgtgaaat
    14281 ataaatttgg ttcctttgga aaacaacaat agcgtgtagt attgtttact tact
//
LOCUS       DASDXX010000057        13814 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.057, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000057 DASDXX010000000
VERSION     DASDXX010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13814
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.057"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            60..1157
                     /locus_tag="U0280_001336"
     CDS             60..1157
                     /locus_tag="U0280_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM2271287.1"
                     /translation="MEKNIDVLQNWLKDQGAEVAFLTDPENIAYFSGYHSEPHERVLG
                     LAVFPDSEPFLFTPALEVEDVRGGDWTHPAYGYNDTENPFTIIADEIKKRVANPSKFA
                     IEKKHMSVDRYEQLGGLFSGSSFIPIEHKIEQIRLIKTEAELKILKEAALLADYAVQV
                     GVNEIAEGKTEAEIVAKIEYEMKKKGVTAMSFDTMVLTGKNGALPHGTPGETKIKKGD
                     LVLFDLGVVHKGYCSDITRTVAFGDISDEQKKIYDTVLEAQIAAVEKVKDGVKASEID
                     LTARNIIREAGYGDYFPHRLGHGLGASVHEFPSITETNNMELQENMVFTIEPGIYVPG
                     VAGVRIEDDLVVTKDGVQVLTEFPKTLQVID"
     gene            complement(1200..2312)
                     /gene="ald"
                     /locus_tag="U0280_001337"
     CDS             complement(1200..2312)
                     /gene="ald"
                     /locus_tag="U0280_001337"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEM2271288.1"
                     /translation="MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSN
                     YQDADFVQAGAKIVETAKEAWDVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTL
                     AKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLG
                     GVPGVEKSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLM
                     SNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVIKQMIPGSVLVDIAIDQGGIFET
                     TDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLKAAVQ
                     NDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI"
     gene            2551..3015
                     /locus_tag="U0280_001338"
     CDS             2551..3015
                     /locus_tag="U0280_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM2271289.1"
                     /translation="MLQQYERVLVAVDGSKEAERAFQKAIQVANRNDAALGLVHVIDT
                     RAFSSVANYDTSMADKATEYADELLSGYKEDALKAGVTKVESYIEYGSPKTAITKEAA
                     KAFQADLIMCGATGLNAVERLLIGSVSEYIIRHSPCDVLVVRNDVPDYKEEK"
     gene            complement(3067..4260)
                     /locus_tag="U0280_001339"
     CDS             complement(3067..4260)
                     /locus_tag="U0280_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM2271290.1"
                     /translation="MEKTIAINAGSSSLKFQLYDMPSERVITAGIVERIGLKDSIFTI
                     TVDGEKIKEIIDIPDHEIAVQMLLEKLINHKVIGSYDEITGIGHRVVHGGERFPESVY
                     IDDQVIKDIEALSELAPLHNPANVTGIKAFRKILPDVVSVAVFDTAFHQTMPPASYLY
                     SLPYSYYEDYGIRKYGFHGTSHKYVSERAAELLGRPVEELRLLTCHLGNGASIAAIEG
                     GKSMDTSMGFTPLAGVSMGTRSGNIDPALIPFIMEKTGKTAEQVLDVLNKESGMLGVS
                     GISSDLRDLEDEAAKGNDRAELALQVFVDRIHKYIGSYAARMNGVDAIIFTAGIGENS
                     SYIREKVLRGLEFMGVYWDPALNQVRGEERFLNYPHSPVKVIIIPTNEELMIARDVET
                     IKNNH"
     gene            complement(4284..5282)
                     /locus_tag="U0280_001340"
     CDS             complement(4284..5282)
                     /locus_tag="U0280_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2271291.1"
                     /translation="MANEATQELFQVLDNTAIILQNELEISYLEAVYETGENLFQKEV
                     LQKEELSSEKQLKLQASYESIELENFSNEEIRKGLQLALLKGMKHGIQVNHQMTPDSI
                     GFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI
                     SLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEG
                     HSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPET
                     LFKSEQARKSILILQKADVDVKPPKEVLLANLSSLTDPSVTAPILAEIENWFKRKR"
     gene            complement(5473..5970)
                     /gene="tpx"
                     /locus_tag="U0280_001341"
     CDS             complement(5473..5970)
                     /gene="tpx"
                     /locus_tag="U0280_001341"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEM2271292.1"
                     /translation="MTQVTFKHNPVTLVGTERKVGDKAPNFTVVNRDLEEVTLHDYDG
                     KVRLISVVPSIDTSVCSTQTRKFNEEASNLDNTVVLTISVDLPFAQKKWCAAEGLPNA
                     ITLSDHRDLSFGEAYGVIMKELRLLARSVFVVNAAGEIVYTEVVPEGSDHPNYEAAIE
                     AAKKA"
     gene            complement(6031..6567)
                     /locus_tag="U0280_001342"
     CDS             complement(6031..6567)
                     /locus_tag="U0280_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEM2271293.1"
                     /translation="MANENVAFESKRQVYHYEPPIQKEEAIPKQYFAGFWIRFLAYLV
                     DLVVIAALKGIIINPIFRVSGMGMDDSFFTFYWGMTTIIFLAYFILLTKFFGQTLGKM
                     LFGLRVVKLDGEKLTWLTVLFREGAMRFVLKTIWPLYVVCAFTPNKQGIADFFESTSV
                     VHTGYLELDEKWVNGAKK"
     gene            complement(6587..7600)
                     /gene="sppA"
                     /locus_tag="U0280_001343"
     CDS             complement(6587..7600)
                     /gene="sppA"
                     /locus_tag="U0280_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEM2271294.1"
                     /translation="MNAKRWIALGIVFALLLVSALAKFTSSQIASKEDSSPTFVESLF
                     ADTGELTETVIEEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRND
                     DNIQGVLLYVNSPGGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPAD
                     KIFASKETLTGSLGVIMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKI
                     MQSMIDDSYNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALE
                     ALKKEQGLAGATVIQYDAPGDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYL
                     YGE"
     gene            7779..8582
                     /locus_tag="U0280_001344"
     CDS             7779..8582
                     /locus_tag="U0280_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM2271295.1"
                     /translation="MAKTIFYFSYRKTEELHAKAKELKKITTDYGYELTDDYQKANVI
                     ISIGGDGAFLKSVRETGFRQDCLYAGIALTEQLGQYCDFHINQLDEIIKAAIEDRWLV
                     RRYPTIYGTVNNTKAFYVLNEFNIRSSIIRTLTMDLYINDSHFETFRGDGMVISTPTG
                     STAYNKSVNGSIVDPLLPSMQVSELASINNNKFRTLGSSFILSPKRKLRIEIASEEGN
                     NEFPMIGMDSEALSIQHVHEVNLEVGDRFINIIKLPKNSFWDKVKRNFL"
     gene            complement(8614..9564)
                     /gene="argF"
                     /locus_tag="U0280_001345"
     CDS             complement(8614..9564)
                     /gene="argF"
                     /locus_tag="U0280_001345"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM2271296.1"
                     /translation="MTMYAKNNTAGKDMLSLLEWNKEELTDIIKLAVAMKTNPAHYSH
                     ILSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSE
                     YIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGVKL
                     AYIGDGNNVCHSLLLAGAMVGIDIRLAMPKGYEVDETILAKAENLAKQSGGKIFVTED
                     PKLAVTDADFIYTDVWTSMGQEDENAKRLADFGEKYQVNAELVSGAKPDYHFLHCLPA
                     HREEEVTAEIIDGNHSVIYQQAGNRLHAQKALLAAILEAK"
     gene            complement(9561..10721)
                     /locus_tag="U0280_001346"
     CDS             complement(9561..10721)
                     /locus_tag="U0280_001346"
                     /EC_number="2.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine transaminase"
                     /protein_id="HEM2271297.1"
                     /translation="MKHVFPTYKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLG
                     HCPANVAEAVQQQLTNIWHTSNLYECALQDSVAELIADGKDRLVFFCNSGTEANEAAL
                     KLARKYTGKEKIITFEKSFHGRTFGSMSATAQAKIHQGFGGLVPGFTYVPYNDIEAFR
                     AEIDEHTAAVMLEVIQGEGGVIPANAAFLLEVQLLCKKMGVLLIIDEVQTGLGRTGTL
                     YGFEQIGLEPDIFTLAKGLGNGLPIGAMVGKANLSSAFGPGSHGSTFGGNKLALAAAK
                     EILRTMKQAGFLEEVNAKADYFRYLLEVHLEALDNVSVIRGGGFLIGIELENTAEPVV
                     TELRDKGLLILTAGANVLRILPPLTVSYAEIDQAIYLLKSVLENQLIGSEEG"
     gene            complement(10718..11470)
                     /gene="argB"
                     /locus_tag="U0280_001347"
     CDS             complement(10718..11470)
                     /gene="argB"
                     /locus_tag="U0280_001347"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEM2271298.1"
                     /translation="MENTIVVKLGGVASDNLTEDFFQQIIQWQAANKKIVLVHGGGHY
                     ITKMMKSLAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNAG
                     DTGLLEADFLNDANLGFVGKITKVKTDLIEQLLSENIITVIAPLGINSEYDWLNVNAD
                     TAACEVASALQAEALYLLTDVPGVKKGSEIIGEIATDEIEKLQNAGVIKGGMIPKLAS
                     AAFAAENGVGKVIITDSLNTSGTKIKNKVAIG"
     gene            complement(11483..12679)
                     /gene="argJ"
                     /locus_tag="U0280_001348"
     CDS             complement(11483..12679)
                     /gene="argJ"
                     /locus_tag="U0280_001348"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HEM2271299.1"
                     /translation="MELVKGNIASPKGFYADGKHAGLKRKRNDIGWIYSEVPANAAAV
                     YTMNQMQAAPIFVTKDSFQSNAKLQAIIVNSGNANACTGNQGMLDALAMRAQTAEKLD
                     IPLDYVAVASTGIIGDMLPMDKINAGIEMLEKQTGNAADFEEAILTTDTFQKQISFQT
                     EIGGRKVTMSGVAKGSGMIHPNMATMLAFITTDAAIPAELLQKLLKIKVDKTFNQITV
                     DGDTSTNDMVVVMANGCAENSMLQEGTADFAKFADMFQAVTEHLAKSIARDGEGATKL
                     IEVQVNGATKTEDARMIAKKIVSSSLVKTAAFGGDGNWGRIICAIGYSGGRFAPDNIT
                     IKIGGIEILNHSSQTIFNQQALDAYLEEEHIIIDVDLHIGLESGTAWGCDLSYEYVKI
                     NACYRT"
     gene            complement(12695..13726)
                     /locus_tag="U0280_001349"
     CDS             complement(12695..13726)
                     /locus_tag="U0280_001349"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEM2271300.1"
                     /translation="MKVSIIGATGYGGLELIRLLHQHASVDIATLHSFSAQSETLATF
                     YPHLKDLEASPLEKINSAEIIEKSDTVFIATPSGIAKDIALPYVDAGLNVIDLSGDFR
                     LKDRQLYEKWYGKSAAPIEYIAKAEYGLAEFRDKKEARFIANPGCYATATLLGIAPLV
                     ISQLIDPTSIIVDAKSGISGAGKVPSASTHFTETNENMTLYKMNSHQHIPEIMQQLTK
                     WDETIPAIQFSTSLIPITRGIFTTIYVKPKNPITQKELHTLYKSTYENAPFVRIQPEN
                     VYPTVKQVTASNYCDIGLAYNEKTNVITIVSVIDNLVKGAAGQAIQNLNIMANFAESD
                     GLRFIPVYP"
BASE COUNT         4028 a         2899 c         2422 g         4465 t
ORIGIN      
        1 aaaataattc cttcgcatgt tatcatgaaa tagaaatcaa ttggaaagaa ggtacaatta
       61 tggaaaaaaa tatcgatgtc ttacaaaatt ggctaaaaga ccaaggtgct gaggtggcat
      121 ttttaacaga tccagagaac atcgcttatt tctcgggtta tcatagtgag cctcatgagc
      181 gcgtgcttgg cttagcagtt ttcccagata gtgaaccgtt tttatttacg cccgctcttg
      241 aagtagaaga tgtgcgcggc ggtgactgga cacaccctgc atacggatat aacgataccg
      301 agaatccttt caccatcatt gcagacgaaa tcaaaaaacg cgttgcaaat ccaagcaaat
      361 ttgctattga gaaaaaacat atgagcgtag atcgctacga acaattaggt ggattattct
      421 ccggcagctc tttcattccg attgaacaca aaattgagca aattcgtctg attaaaaccg
      481 aagccgaact aaaaatatta aaagaagcag ccttattagc cgattacgcc gtacaagttg
      541 gtgtaaacga aatcgcagaa ggtaaaacag aagcagaaat cgtggcgaaa atcgaatacg
      601 aaatgaagaa aaaaggcgta actgccatgt ctttcgatac aatggtcctt actggtaaaa
      661 acggtgccct gccacatggt actccaggcg aaacaaaaat caaaaaaggc gatttagttt
      721 tatttgattt aggcgttgtc cataaaggct attgctctga tattacacgc acagtagctt
      781 ttggagatat ttccgatgaa cagaaaaaga tttacgacac tgttttagaa gcgcaaattg
      841 ccgctgtcga aaaagtaaaa gacggggtaa aagcaagcga aattgattta actgctagaa
      901 atattattcg tgaagcaggt tacggtgatt atttcccaca tcgtcttggt cacggtcttg
      961 gcgcgagtgt ccatgaattc ccttcgatta cagaaacgaa caatatggaa ctgcaagaaa
     1021 atatggtatt tacgattgaa ccaggtattt atgttcccgg tgttgccggc gttcgtatag
     1081 aagatgacct cgttgtcaca aaagacggcg tgcaagtatt aacggaattc ccaaaaactt
     1141 tacaagtaat cgactaacaa gaaaagcgaa ctttcctttg agaaagttcg ctttttttat
     1201 taaattaatt ctttgctatc cgtatagggt aaatcaagtg aatctgcaac agccttgtac
     1261 gtaatgtgac cttggtatgt gtttaatcca cgaagtaaga atgggtcatt ttgcacggct
     1321 gcttttaagc cttgattagc aagtttcaat ccaaatggta aagtggcatt agtaagcgcc
     1381 aaagtggacg tccgcggtac tgcacctggc atatttgcaa cagcataatg aagtacacca
     1441 tatttttcgt aggttggatt atcgtgtgtg gaaacgtgat ctgttgtttc aaaaatccct
     1501 ccttggtcaa tcgcgatatc tacaaggaca gatcccggaa tcatttgttt aattacatgc
     1561 tctttgacga gtttgggcgc ttttgctcct ggaattaata ctgctccaat aaccaaatca
     1621 gcttttttca cagctgtttc aatattaaaa tcattcgaca ttaacgtttg gacttgattg
     1681 ccaaaaatat cgtccagttc gcgcaatcgt ttcaaattca tatcaagaat ggtcacgttg
     1741 gcacctaaac cagctgcaat tttcgctgca tttgttccag cgattccgcc accaataata
     1801 accacttcac ttttctctac acccggcacc ccaccaagca agacacccat accaccattc
     1861 gttctttgta aaaattgtgc gccaatctga gctgccattc gcccagcaac ttcactcatt
     1921 ggcgaaagta gtggcaacgt gtggtctgca agttctactg tttcatacgc tacactattt
     1981 actttactct ccatcaaagc tttcgcaagc gttggttcat ttgccaaatg taaatatgtg
     2041 aaaagtaata gtccttcttt aaagtatgta tactctgatg caatcggttc ttttactttt
     2101 acaaccatat ctacatccca agcttcttta gctgtttcaa caatttttgc ccccgcttgc
     2161 acaaaatcag cgtcttgata attagagcca atgcccgcat ctttttccac gtatacagta
     2221 tgacctgcat ttacgtatga aaaaacactt gccggagtca ttgccaccct attctcgtta
     2281 tttttaattt cttttggtac gccgactaac atctaaatca ctctccttga tataggtata
     2341 atagactata aaagattttc tacaccccca tgctaacaca atatacctaa gttgtaaaaa
     2401 attaactaac tgaaattcaa acaaaagttt tagtaaaatt agacgaaata tttgtttcac
     2461 tataatttat ttttcatttt atggttcttt taggaaaaag agggtaaaat ataagtatag
     2521 aaaatacata ttttgattgg aggaattatt atgttacaac aatacgaaag agttttagta
     2581 gcagttgatg gatccaaaga agcagaaaga gcattccaaa aagcaattca agtggctaac
     2641 cgtaatgacg cggcgcttgg tctggtacat gttatcgata cacgcgcgtt ttcatctgta
     2701 gccaattacg atacaagcat ggcagacaaa gctaccgaat atgcagatga attacttagt
     2761 ggctataaag aagatgcttt aaaagccggt gtaacaaaag tagaaagcta cattgagtat
     2821 ggttctccaa aaacagctat tacaaaagaa gcagcaaaag cattccaagc agatttaatc
     2881 atgtgtggtg caactggact taacgctgta gaacgtttgt taattggtag tgtatctgag
     2941 tatattattc gccactcccc ttgtgatgtt cttgtagtac gtaatgatgt tcctgattat
     3001 aaagaagaaa aataaggata gaaaaaaagg ctagctctta attaagagct agcctttttt
     3061 acttttttag tgattgtttt taattgtttc tacatcacga gcaatcatta attcttcgtt
     3121 tgtaggaatg atgataactt ttactgggga gtgcggatag ttaaggaatc tttcttctcc
     3181 gcgcacttgg ttaagtgctg gatcccagta tacgcccatg aattcaagtc cacgaagtac
     3241 tttttcacgg atgtatgaac tattttcacc gataccagct gtgaagataa tggcatctac
     3301 accgttcatg cgagctgcat aagaaccaat gtatttatgg atacggtcaa cgaaaacttg
     3361 aagtgcaagt tctgcgcggt cgtttccttt tgctgcttca tcttctaaat cacgaagatc
     3421 gcttgaaata ccagatacgc caagcatacc agattctttg tttaacacat caagtacttg
     3481 ttctgcagtt ttgccagttt tttccatgat gaaaggaata agcgcagggt caatgttacc
     3541 agaacgagtt cccatagaaa caccagctag tggtgtgaat cccatggaag tatccattga
     3601 ttttccgcct tcgattgcag cgatactagc accattacca aggtgacaag ttagtaaacg
     3661 taattcttct acaggacgtc ctaaaagttc tgcagcgcgt tcggatacat atttgtgact
     3721 tgtaccgtgg aaaccgtatt tacggatacc atagtcttca tagtagctgt atggcagact
     3781 gtatagataa cttgctggag gcattgtttg atggaaagct gtatcgaaaa cagccactga
     3841 aacaacatct ggtaaaatct tgcggaatgc tttaatacca gtaacgttcg ctgggttatg
     3901 aagcggcgca agttcagata gagcttcaat atctttaatt acttggtcat caatataaac
     3961 ggattcaggg aatctttctc caccgtgaac aacgcggtga ccaattccag tgatttcatc
     4021 gtaagaaccg ataactttgt ggttaattaa tttttcaagt agcatttgaa cagcaatttc
     4081 atggtcagga atatcaataa tttctttgat tttttctccg tctacagtaa ttgtaaaaat
     4141 agaatctttc aaaccaattc tttctacaat ccctgctgtg ataacacgtt cagatggcat
     4201 atcatataat tggaatttca gtgaagaact tccggcgtta attgcaatcg ttttttccat
     4261 tttgtttttg tcaattcctt ccattatcgt ttccttttga accagttctc tatttcagct
     4321 aaaatcggtg cagttacgct cggatctgtt agcgaagaga gattggccaa taaaacttct
     4381 tttggcggct ttacatctac gtccgctttt tgtaaaatca agatgctttt tcgtgcttgt
     4441 tcagacttaa acagtgtttc aggcaattta ataattccct caatatgacc gtttttcttg
     4501 ataaacttgt ccaccttagc aaagtcacta gtcccaaaca ttgcgtcagg taccaagaag
     4561 aataaatatc ctcctggctt tgtgtagcgc attccttgtt ctataaacaa gaaatgtgca
     4621 aatgaatgcc cttcttcacg gcaaagttca aatgtttttg cattttcgtc atccggataa
     4681 tacccaacag gtaaatcact aattacgaca tctacgggat caactaataa attagccagc
     4741 ccatcttgat gcagcaatgt cattttttgt cgctgtaaat ccgctcctac tagtgcaagc
     4801 gaaataagca aatcatctac atctacacca cttgcatgaa cgtctacatc accttttaat
     4861 tctagctgat taatcactgt tgttaaaagg tttgcagtgc cacaggctgg atccaagata
     4921 gaaacatttt tcttcttttg aatcactttt tcaagcaaat atgccacaat gaaaccaatg
     4981 gaatctggcg tcatttggtg gttcacttga ataccgtgtt tcatgccttt tagtagtgct
     5041 aattgaagac ctttgcggat ttcttcattc gagaaattct caagttcgat actttcgtaa
     5101 gacgcttgta atttcaattg tttttcagaa gacaactctt ctttttgtaa aacttctttt
     5161 tgaaacagat tttctcctgt ttcataaacc gcttccaaat agcttatttc aagttcattt
     5221 tgcaagataa tagctgtatt atcaagcact tgaaataatt cttgcgttgc ttcatttgcc
     5281 aaaagtaaca cctcgaattt tcatcattac taacaccacc aaacattata cagtatttct
     5341 aaagaatgtg aaaggatttt atgtagtaaa agatgaaatt ctcattggaa atagttcatt
     5401 atcattagta cagtttattt ttagtagtaa tacagaaaaa agccctccta actaaaggaa
     5461 ggcttttacg atttaagctt ttttggctgc ttctatcgct gcttcataat tcggatgatc
     5521 gctaccttct ggaactactt ccgtgtagac gatttcccct gctgcattta ccacaaaaac
     5581 agaacgagct agtaagcgaa gttctttcat gattacaccg tatgcttcac caaaagaaag
     5641 atcgcggtga tcagataatg taatcgcatt tggtaaacct tctgcggcac accatttctt
     5701 ttgagcaaat ggtaaatcaa cggagatagt taagacaact gtattatcta aattgcttgc
     5761 ttcttcatta aatttacgcg tttgtgtgga acaaacactt gtatcaatgg aaggaacaac
     5821 gctgataagt ctcactttcc cgtcataatc gtgcaatgtt acttcttcta aatctctatt
     5881 caccactgtg aagttcggcg ctttgtcgcc aacttttctt tcggtaccta cgagtgtaac
     5941 tggattatgt ttaaatgtta cttgagtcat tttttcttcc tcctttaatg gacgcttcta
     6001 ttccatttta aagaagaagt ttgctataag ctattttttt gctccattta cccatttttc
     6061 atctagttct aagtagcccg tgtggacgac agatgtggat tcaaaaaagt ccgcaatgcc
     6121 ttgtttgttt ggtgtaaagg cacaaaccac atataacggc caaattgttt ttaagacaaa
     6181 acgcatcgca ccttctcgaa ataaaacggt taaccaagtt aatttttcgc catcaagttt
     6241 cactacgcga agaccaaata acatttttcc aagcgtttgt ccgaaaaact tagtaagcag
     6301 aataaagtaa gctaaaaaga taatcgttgt cattccccaa taaaatgtga agaaactgtc
     6361 atccatcccc attccagaaa cgcggaaaat cggattaata atgattccct tcaaggctgc
     6421 gatgacaact aaatcgacta aataagctaa aaaccggatc caaaagccag caaagtactg
     6481 tttaggaatg gcttcttctt tctgaattgg tggttcataa tgatagactt ggcgtttact
     6541 ttcaaaagca acattttcat tagccatttg cgcctctcct ctcacattat tctccatata
     6601 aatacatcat tcttggcgct ttaagtgtac cagttaattt aattagttga gaaatatccg
     6661 cattttgacc ggaaattttt tgtgcagcta cagagaatag tgagctaaaa tctcccggtg
     6721 catcatattg gataactgtt gcaccagcta agccttgttc ttttttcaaa gcttctaggg
     6781 catcttcttg ataaccaaat tcatcaatca atccgttctc ttttgcttgg cggccgtcgt
     6841 atatgcgacc atctgcaatt ttacgcactt gttctacagt cattccacgg ccctgtgcaa
     6901 ctactttaac gaactcatta taagaatcat caatcattga ctgcataatc ttcttctcgt
     6961 cttccgtcat tggtcttgtc ccgctcataa tgtctttata ttcgccactt ttaatggtat
     7021 tatctgaaac acctaatttt ttcatgagtt cactatagtc atacccttgc ataatgacgc
     7081 caagcgagcc ggtcaatgtt tctttacttg caaaaatttt gtcggctggc gcggaaatat
     7141 aatatccacc tgatgctgcc atactcccca tggaaacata gaatggaata ttgcgttctt
     7201 tttgaatttg taaaatttta tcacgaattt gcgcggattc catgacaccg ccacctggtg
     7261 aattaacata caaaagtaca ccttgaatat tgtcatcatt tctaacttgc tctaattgtt
     7321 gcataaaaaa agaatgattg tagccagcct cactaaataa ggaacctgaa tctcccgtat
     7381 cttgaatagt gccatctaca gataatacag caattgtatc attcccgcct tcttcaatta
     7441 ctgtttcggt tagttcgccg gtatctgcga ataggctttc gacaaatgtc ggactactat
     7501 cttcctttga agcgatttga cttgatgtaa actttgctaa cgcactaact aacaaaagtg
     7561 caaaaacaat ccctagtgca atccatcttt tagcgttcat ttatttctcc cctttttctg
     7621 attagataat gtaataataa cagcctcttt tattttgtac aatctttctc ttaaattgtg
     7681 tcccatttca cttttttact tatgatgaaa gaaattgctc tgaagtcatg ttataataag
     7741 tttgttgatt aaaattggat tctggaggga caactaacat ggcaaaaact attttttatt
     7801 tttcctatcg aaaaacagaa gaactacatg caaaagcaaa agaattgaag aaaattacga
     7861 cggattatgg atatgaatta acggatgact atcaaaaagc aaacgttatt atcagcattg
     7921 gtggtgatgg tgcttttctt aaatctgtaa gagaaactgg cttccgtcaa gattgtttat
     7981 atgcagggat tgcgctaaca gagcaattag gtcaatactg tgacttccat attaatcaat
     8041 tggatgaaat catcaaagca gccattgaag atcgttggtt agtacgtcgt tacccaacta
     8101 tttatggaac agtgaataat accaaagcat tttatgtact aaatgagttt aacattcgtt
     8161 cttctatcat tagaacgctt acgatggatc tttatattaa tgattctcac ttcgaaactt
     8221 tccgcggaga tggcatggtt atttccacac caacaggaag taccgcttat aataaatcag
     8281 tgaacggttc tatcgtggac ccacttcttc catctatgca agtaagtgaa ctggcttcta
     8341 ttaacaataa caaattccgc acacttggtt cttcgttcat tcttagtcca aaacgcaaac
     8401 tacgtattga aattgcgtct gaagaaggaa ataacgaatt cccgatgatt ggaatggata
     8461 gcgaagcact tagtatccaa cacgtgcatg aagttaattt agaagtaggc gatcgtttta
     8521 tcaatattat caaactgcct aaaaattctt tctgggataa agtgaaacgt aatttcttat
     8581 aataaaaaag tctggcactt acgccagact tttttatttt gcttccaaga tggctgctag
     8641 taatgctttt tgtgcatgaa gccgatttcc cgcttgttga taaatgaccg agtgattgcc
     8701 atcaatgatt tcagctgtca cttcttcttc ccgatgtgct ggtaagcaat gtaagaagtg
     8761 gtaatcaggc ttggcaccac taactaattc tgcatttact tgatattttt cgccaaaatc
     8821 cgccaaacgt ttcgcatttt catcttcttg ccccatactt gtccaaacat ccgtataaat
     8881 aaagtccgca tcagtcactg caagttttgg atcttctgta acgaaaatct tgccaccact
     8941 ttgcttcgcc agattttctg cctttgcaag aattgtttcg tcgacctcat acccttttgg
     9001 catcgcaagg cgaatatcta tcccgaccat agcgccggct aaaagcaatg aatgacatac
     9061 attgttacca tcaccaatat aagctagttt gacaccttcc aactgatctt tccattcata
     9121 aatagtcatt aaatccgcta acgcctgaca tggatgatgc aggtcggtta agccattaat
     9181 aattggaatt tctgcatgat acgccaattc ttctactttt tcatgactaa atgtccgaat
     9241 cataattgca tcaatatatt ctgacatcac atgcgccgta tctttaatcg gttcaccacg
     9301 cccgatttgc aattcctttg aactcatcac tatcgcttgt ccacctaatt gcagaatccc
     9361 ggcttcaaaa gaaacccgtg ttctagtaga aggcttgtca aagatcattc ctaaaatttt
     9421 cccgcttaaa atatgactat aatgagctgg attcgttttc attgcaacag ctaatttaat
     9481 gatatctgtc aattcttctt tattccattc aagcaaactg agcatatctt tcccagctgt
     9541 attatttttc gcatacattg tcatccctct tcactcccaa tcaattggtt ttccaaaaca
     9601 cttttcaata aatatatggc ttgatcgatt tctgcataac tgacggttaa aggtggtaag
     9661 attcgtagca cattagcccc cgcagttagt attagcaatc ctttatctct aagttccgtt
     9721 acaactggtt ctgcggtatt ttcaagttct atacctatca gaaatcctcc accacgaatg
     9781 acagaaacat tatccaacgc ctctaaatgc acttctaaca aatatctaaa atagtctgct
     9841 ttggcattta cctcttctaa aaatcccgct tgtttcattg ttcgtaatat ctctttagcc
     9901 gccgcaaggg ccaatttatt tcctccaaaa gtagagccat gacttcctgg cccaaaagca
     9961 ctacttagat tcgcttttcc gaccatcgct ccaatcggca agccatttcc aagccctttt
    10021 gctaaagtga aaatatctgg ttctaaacca atctgctcaa atccataaag cgtccccgtt
    10081 cgcccaagcc cagtctgcac ttcatcaata attaataata cccccatttt tttgcaaagc
    10141 aattgaacct ctaaaagaaa ggctgcattt gctgggatga cgccaccttc cccttgaatt
    10201 acttctaaca tgactgctgc tgtatgttca tcgatttctg ctcggaaagc ctcgatgtca
    10261 ttataaggga cgtaagtgaa gccaggaaca agtcccccga acccttgatg aattttagct
    10321 tgggctgtag ctgacatcga accaaaagta cgtccgtgga aagatttttc aaaggtaatt
    10381 attttttctt tcccggtata ttttctagct aatttgagcg ctgcttcatt tgcctctgtt
    10441 ccgctattac aaaagaaaac taatctgtct ttaccatctg caattaattc tgcgacacta
    10501 tcttgcaaag cacattcata taaattcgat gtgtgccaaa tattcgttag ttgttgttgt
    10561 actgcttctg caacatttgc tggacaatga ccaaggttac aaactgcgat accgctagtg
    10621 aaatcgagat atgttttacc atttttatct gttacaaccg tgcccgtacc gttaactaaa
    10681 tcaataggaa accttttgta tgttggaaaa acatgtttca tccaatcgcc accttgtttt
    10741 ttatttttgt tccgctagtg ttaagggaat ctgtaataat aacttttccg acaccgtttt
    10801 cggcagcaaa ggcagcgcta gctaatttag gaatcattcc accttttatt acgccggcat
    10861 tttgcagctt ttctatttca tctgtggcta tttcgccaat aatttctgaa ccttttttca
    10921 caccaggtac atctgttagt aaatagagtg cttctgcttg aagtgcgctt gctacttcac
    10981 aggcggctgt atctgcattg acatttagcc aatcgtattc actgtttata ccaagcggcg
    11041 caatcacagt gataatattt tcgctaagta attgttcgat taaatctgtc tttactttcg
    11101 ttatttttcc gacaaatccc aaattcgcgt cgttcaaaaa atctgcttct agtaaccctg
    11161 tatcacccgc atttaaaccg ataaccgaaa tattacgttt ttgaaaagca gtggtaatag
    11221 ctggttggac ttggccaatt aaaaccattt ttgtcacttc aagagtcgct ttattagtga
    11281 cacgtagacc attttttgtt tcgacaggaa tagcaagaga tttcatcatt tttgtaatat
    11341 aatgcccgcc gccatgaaca agtacaattt ttttattggc agcttgccat tgtattattt
    11401 gttggaaaaa atcttctgtt aaattgtcac ttgcgacacc gcctagtttt acgactatcg
    11461 tattctccat cctgattcct ccttacgtcc ggtagcatgc gttaattttg acgtattcat
    11521 aactcaagtc gcaaccccat gctgttcctg actcaagtcc gatatgaaga tcaacgtcga
    11581 taatgatatg ctcttcttct aaataggcat ctaacgcctg ttgattaaaa atggtttggc
    11641 tgctatgatt cagaatttca atcccgccaa ttttaatcgt aatattatct ggcgcaaacc
    11701 ggccacctga atagccaatc gcgcaaataa tacgtcccca gttcccatct ccaccaaaag
    11761 ctgccgtctt cacgagacta gaggaaacaa tttttttagc aatcattctt gcatcttctg
    11821 tttttgtagc gccattaact tgtacctcga ttagttttgt cgctccctcg ccgtctcgcg
    11881 cgatgctttt agcaaggtgc tccgttaccg cttgaaacat atccgcaaat ttcgcaaaat
    11941 ccgctgtccc ttcctgaagc atcgagtttt ctgcacagcc attcgccatg actaccacca
    12001 tatcgttggt agaagtatcg ccatctaccg ttatttgatt gaaagttttg tctactttta
    12061 tttttagtaa tttttgcaat aattcagccg ggattgcggc atctgttgta ataaaagcaa
    12121 gcattgtcgc catatttgga tgaatcattc ctgatccctt cgctacacct gacatcgtta
    12181 cctttctacc accaatttct gtttgaaaac tgatttgttt ttgaaacgta tctgttgtta
    12241 aaatcgcttc ttcaaaatcg gccgcatttc cagtttgctt ttctagcatt tctattcccg
    12301 cgttgatttt gtccatcggt agcatatcgc caataattcc cgtggaagca acggctacgt
    12361 aatcaagtgg aatatctaac ttttctgccg tttgagcccg catcgcaagt gcatctaaca
    12421 taccttgatt ccctgtacat gcattggcat tcccactatt cacaataatt gcttgtaact
    12481 tcgcattact ttgaaaagaa tctttcgtta caaaaattgg tgcggcttgc atttgattca
    12541 tcgtataaac agcggctgca tttgctggaa cttctgaata aatccaacca atatcatttc
    12601 gttttctttt aagccctgca tgttttccgt cagcataaaa tccttttggt gaagcgatat
    12661 ttcctttgac aagttccatt ttatttttcc cctttcacgg atacaccgga ataaacctta
    12721 atccgtcact ttcagcaaaa ttcgccatta tgtttaaatt ttgaatggcc tgaccagccg
    12781 cccctttaac taaattatca atcacagaaa cgatagtaat cacattcgtt ttttcattat
    12841 aagcaagacc tatatcacag taattcgatg ctgtcacttg tttgacagtc ggatatacat
    12901 tttctggttg gattcggaca aatggagcat tctcgtaggt ggatttgtaa agcgtatgta
    12961 actctttttg ggtgatagga tttttgggtt taacgtagat ggttgtgaag atgcctcttg
    13021 tgatgggaat taacgaagta gaaaattgaa ttgctgggat agtctcatcc catttagtta
    13081 attgttgcat aatttctgga atatgttgat gagaattcat tttataaagt gtcatgtttt
    13141 cattggtttc tgtaaaatga gtacttgcag agggcacttt tcctgcgccg gaaatacctg
    13201 atttagcgtc tacgataatc gatgttggat caatcaactg gcttatcact agaggtgcta
    13261 tacctaacaa tgttgcagtt gcataacatc caggattagc aatgaatcta gcttctttct
    13321 tatcacggaa ttctgctaaa ccatattccg ccttagcgat atactcgatt ggagccgcgc
    13381 tttttccata ccatttttcg taaagctgcc tgtcttttaa tcgaaagtcc ccggatagat
    13441 caatgacatt caaacctgca tctacatatg ggagagcaat atctttcgcg attccagaag
    13501 gcgtggcaat aaaaacggta tcactttttt cgatgatttc tgctgaattt attttctcta
    13561 aggggctagc ttctaaatct tttaaatgag gataaaaggt tgcaagtgtt tctgattgag
    13621 cggaaaaact atgtaacgtc gctatgtcta ccgaagcatg ttgatgaagc aagcgaatta
    13681 gctcaagccc tccgtatcct gttgcaccaa taatggaaac tttcatccta acccctcccg
    13741 ttaattatta aatgatactt ttcattataa tgatgtatat ttataatgtc aaatggtttt
    13801 ttattaatat ttaa
//
LOCUS       DASDXX010000058        13663 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.058, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000058 DASDXX010000000
VERSION     DASDXX010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13663
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.058"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(21..929)
                     /locus_tag="U0280_001350"
     CDS             complement(21..929)
                     /locus_tag="U0280_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEM2271301.1"
                     /translation="MTEEKGILLQSGTNELEIVTFTVGENLFCINVLKVKEIIHPLEV
                     TPVPDSNPAIEGVSQVRGEIMPVVNLARVMKLPEIEPENTKFIITELNQMKIVFRVDE
                     VHRIQRISWEQIEEPEKLSIGLEELAVGIVKLDGNLVLLLDYEKIIYEISGNADFAVT
                     GEDRMARKVNREEKTIFIAEDSQMLRQLLEDTLHEAGYTNLQFFANGREAQEHIFKLL
                     KEQKEQTFENVNLLITDIEMPQMDGHHLTKVIKEDEIGRELPVVIFSSLITEDLEHKG
                     AGVGADAQVSKPNIHQLINILDELVL"
     gene            complement(942..2855)
                     /locus_tag="U0280_001351"
     CDS             complement(942..2855)
                     /locus_tag="U0280_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM2271302.1"
                     /translation="MRPLISICMIVKNEAHILRQSLASFRKFTEEIIIVDTGSTDETK
                     EIAQEFTDFVYDFEWTGNFSDARNFAAKHATGKWILAIDADECLEEESYRKLEKQLKS
                     PIEPIQMAQIISFTGEKGRVTTTNQMARVYKNDGTICFRGVIHEQLEAVDKHPIAAGV
                     AEVKIYHYGYMTEIVEKQDKSDRNLRLLEKEVKNNKNSGFVHFNIGQEMNRLGNKKEA
                     LKEFSEAFRLRDHNHYIWAKLSAYHIAELLEQEKRYDESLAIIEEARIIWPNVPEFPL
                     KKANILYVNHQLEDAKEIYQSLLENTAIDYQSIVLYEATNFMPHKMLGTIYLEEKDYT
                     RAMTHFSKAYAENSSDYGVMFQMIMLLSKFHQPKEIFAFMERHHFISSTETGLRLLSM
                     TTQQGYAELSELIVQSLTDVYPPIAEATEVKIATIRNVFPVISESAILFGIKEELIDA
                     ADLCLWHYENPQLPIERVMKNSDVGDIYDFIFENGPRISKKRYLFVLERAIALGKGEF
                     ADYLLALRNVYHDSINSHIADLFFQYDFADIALDFYNIVDADEVTKQGYINLINYLVD
                     AEVLDEALAIAERGIDNFSTDFRFYLWTIKIDTENRANRISEAMDEFPNNRYLAKLLD
                     EVTMLQDTVTNNR"
     gene            complement(2878..3378)
                     /locus_tag="U0280_001352"
     CDS             complement(2878..3378)
                     /locus_tag="U0280_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271303.1"
                     /translation="MQLFLSGSHTLTDYDKQEIQAYLEKFAPVNHIHLLCYKSIENEV
                     LQFFLKKEHLAPRLSIYTFAPKECLPEPFLSTIDYLECLGSSYQSFGYFDTVIAKPTY
                     EKFLAQIVSKMDLVCCFYNGDKPTDVIPVDVAKSFDVQSMIYDLPKAKKHLLHRASSD
                     KIKLVN"
     gene            complement(3388..4215)
                     /gene="motB"
                     /locus_tag="U0280_001353"
     CDS             complement(3388..4215)
                     /gene="motB"
                     /locus_tag="U0280_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEM2271304.1"
                     /translation="MAKRRKKPQEEHVDETWLIPYSDLLTLLLALFIVLFASSSVDAK
                     KFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEATEQEKAK
                     KAAAALLKKQNEEKIEAFKKQIDSYIAAEHLGAKMTTKYSDEGLLITIRDDILFQSGS
                     AELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWELSVARAVNFM
                     EAIIQENSEVNPGEFSARGYGEFRPVAKNDIAANREKNRRVEIMVRPINRDTLDEDE"
     gene            complement(4175..5026)
                     /gene="motA"
                     /locus_tag="U0280_001354"
     CDS             complement(4175..5026)
                     /gene="motA"
                     /locus_tag="U0280_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEM2271305.1"
                     /translation="MEITTIIGLVLAVIVIAGSFMIQNISLAMLFSAEALIVIILGTI
                     TAVMMAHPWSDVKVVPKLFKILFTKEKMPDKVEVLVQYKEYADEIRRSGVLALEDSVD
                     EIEDPFMKRGMRLVVDGQSSPEFLRDVLEEEVASMEERHAAYAKIFASAGAYAPTLGV
                     LGAAMGLIHAMGEMSNPDKLSEAIAAAFVCTIFGIFTGYVLWTPFANKLKVKSQKEVH
                     LRYMMIEGVVALQERNAPRVVEERLLSFLSPKEKDVLRNGKGKKTREVEEIERGQASQ
                     ETAGGTR"
     gene            complement(5053..5388)
                     /locus_tag="U0280_001355"
     CDS             complement(5053..5388)
                     /locus_tag="U0280_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3964 family protein"
                     /protein_id="HEM2271306.1"
                     /translation="MGRIENIKNLAFFEDKPGLAEQILMLEKKTQLFLPNEFEIRQTV
                     GYEIGDKEVILGRLESFYFLALKGVGEDNYRSQAFASEADAKAFFVHLPEMENELVAF
                     WLNEVELVR"
     gene            complement(5413..6201)
                     /locus_tag="U0280_001356"
     CDS             complement(5413..6201)
                     /locus_tag="U0280_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HEM2271307.1"
                     /translation="MIPDLEKDYLYFTRVVKRDLGLDLALYKETQMKRRILSFIVKKQ
                     YITFGEFFKHLKKDAVLLDEFISLITINVSSFFRNRNRWDALEKQVLPRLLEDSRGKL
                     RVWSAACSSGEEPYSLAMMMERSVGTRHYDILATDLEPAILKRAVIGEYQSRQMEELT
                     EQERHTAFVEKGDTYQILPKYRKSIRFRRHDLLTDYYEKGFDLIVCRNVLIYFTAEGK
                     HQAYQKFAESLRRGGVLFIGGSEQILNPADYGLATLNNFFYIKT"
     gene            complement(6230..7009)
                     /gene="flgG"
                     /locus_tag="U0280_001357"
     CDS             complement(6230..7009)
                     /gene="flgG"
                     /locus_tag="U0280_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEM2271308.1"
                     /translation="MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVIS
                     RNKVNYQNGPVARQVGTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNF
                     FITAKNGEISLSRGGQFHSDQFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLY
                     NAETGQYLGRLGTKFVSANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSN
                     VDLGVEMVQLMDNQRMVQASKNVVNMFDKVYDKEATGLIRQ"
     gene            complement(7006..8229)
                     /gene="flhF"
                     /locus_tag="U0280_001358"
     CDS             complement(7006..8229)
                     /gene="flhF"
                     /locus_tag="U0280_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEM2271309.1"
                     /translation="MGKHLVEKMEIFKANSKREIHKKIRLVTNEPYKITDERVTKLGI
                     FKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKNRPKTDDLLKKEKLLEMLAAGAEL
                     AQSTPLLEERKTQEEELSAMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTY
                     VADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVG
                     KTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA
                     VQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT
                     ILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRW
                     LAERFVGTDRRRVLE"
     gene            complement(8251..10326)
                     /locus_tag="U0280_001359"
     CDS             complement(8251..10326)
                     /locus_tag="U0280_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEM2271310.1"
                     /translation="MGNLGAIKKYFAILIAVSFVIALIVPLPPFVLDLVLVTILAFSV
                     LVYMRATSIKDWNELKSFPSLLLLMGIFRVSINISTTRAILTTGDPGQVIKQFGNFVI
                     GSNFVVGIVIFIILIVFQFIVANGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITE
                     PEAKEKRAYLNMETEFYGAMDGAGKFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFG
                     EAAVKYTELTIGDGIVSQIGSLLMAMSAGVIVTRVFDGSDDNVAVGIFKELMQNSVVV
                     YTLAAMFILMGVFSPLPTIPFVGIGVVLGIIGYRTQFNLKKKEQLELEKEMELIQSET
                     SSAEAEHNQAFGAAREKFPVVVELGLNIAALVKQKMNGETAKDKVVLMRKSILQDLGI
                     GVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKAGHLLALKTPGVMMDLDAEPTKDP
                     IFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDVVLRKNLHELLMRQQIKDLIDG
                     LADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDLPTIVEGIIDGQTIYPNDLD
                     GITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIVNTPYYGYALNWALDKEL
                     PIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLDVPVLSISELSPETEV
                     EQIALIEPT"
     gene            complement(10373..11419)
                     /gene="flhB"
                     /locus_tag="U0280_001360"
     CDS             complement(10373..11419)
                     /gene="flhB"
                     /locus_tag="U0280_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
                     /protein_id="HEM2271311.1"
                     /translation="MAKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLY
                     FFGEMFIKNTIQAFVALLKQPPKLANMESYSLFYLMEFGKVLMPIMVMVVIFGLMNYG
                     VQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDH
                     LDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQ
                     EIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTK
                     DHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI
                     EVMKELMDADKIKF"
     gene            complement(11435..12196)
                     /gene="fliR"
                     /locus_tag="U0280_001361"
     CDS             complement(11435..12196)
                     /gene="fliR"
                     /locus_tag="U0280_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEM2271312.1"
                     /translation="MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAIS
                     IPVATGVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQ
                     VNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGF
                     IDLLLGTLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGI
                     FILACAVPILSTVFKNLTDEMIQQYVSFFDYLLKK"
     gene            complement(12199..12471)
                     /locus_tag="U0280_001362"
     CDS             complement(12199..12471)
                     /locus_tag="U0280_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HEM2271313.1"
                     /translation="MNLTPITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQI
                     QDQSLTFLPKIVAFVVALFILGPWMFEHMTDLFVGIFSKLPLMIRV"
     gene            complement(12484..13251)
                     /locus_tag="U0280_001363"
     CDS             complement(12484..13251)
                     /locus_tag="U0280_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein flip"
                     /protein_id="HEM2271314.1"
                     /translation="MRKIASRRVFQVSFIVIFAISLVVFWPGVNVHAESWLDSLGVNG
                     TDGVNSSVALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL
                     ALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMM
                     LKAEGEDPVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLG
                     MMMVPPMTISLPFKILVFIFIGGYGLITNMIFQTIHF"
     gene            complement(13244..13558)
                     /locus_tag="U0280_001364"
     CDS             complement(13244..13558)
                     /locus_tag="U0280_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEM2271315.1"
                     /translation="MEYFLSLLKIIVLLAVLAGISYFLVKKNKQANRTRKSENDLIKL
                     KDTLLISHQLRAVLLEADGEKVLAIISNNDIRTVSLKGKTDQNEALFRELLLKEETKE
                     NA"
BASE COUNT         3917 a         3181 c         2273 g         4292 t
ORIGIN      
        1 ggttgttcaa acacttcttt ttacaaaact agctcatcta aaatattaat gagttgatgg
       61 atatttggtt tacttacttg cgcatcggct ccaacacctg cgcctttatg ttccagatct
      121 tctgtaatta acgaagagaa aataacaact ggcaattcac ggccaatttc atcttctttg
      181 attacttttg ttaaatgatg tccgtccatt tgcggcattt caatatcggt gattaataag
      241 ttaacatttt caaacgtttg ttctttttgt tctttgagca atttgaaaat atgctcttgt
      301 gcttcgcgac catttgcaaa gaactgcaga tttgtataac cggcctcatg aagcgtatct
      361 tcaagcagtt ggcgcagcat ttgtgagtcc tcggcaataa aaatcgtctt ctcttcacga
      421 tttacttttc gcgccatacg gtcttcacct gtgacagcaa aatcagcatt tccgctaatt
      481 tcgtaaataa ttttttcata atctaataag agtactaagt tgccgtctaa ttttacgata
      541 ccgactgcta attcttctaa accaatcgat agtttttctg gttcttcaat ttgttcccac
      601 gaaatacgtt ggatacgatg aacctcatcg acacggaaaa cgattttcat ttggtttagt
      661 tctgtgataa tgaatttcgt gttttctggc tcaatttctg gcaatttcat cacacgggca
      721 aggttcacaa ctggcatgat ttcgccgcga acttgggaaa cgccttcaat tgccgggttc
      781 gaatctggta caggagttac ttcgagcgga tgaataattt ctttcacttt taaaacgtta
      841 atacaaaata agttttcgcc aacagtaaat gtaacaattt ccaattcatt tgttccactt
      901 tgtagtaaaa ttcctttttc ttctgtcata ttactggcct cctatcgatt gtttgtaaca
      961 gtgtcttgaa gcatggtcac ttcatccaac agttttgcta aatagcggtt attcggaaat
     1021 tcgtccattg cctcactaat tcgattcgcg cgattttcgg tatcaatttt gattgtccaa
     1081 aggtaaaagc ggaaatcagt actaaaatta tcaatgccac gttctgcaat cgcaagtgcc
     1141 tcatccagta cttcggcatc tactaaataa ttaattaggt tgatatagcc ttgtttggtc
     1201 acttcgtctg cgtcaacgat attgtagaaa tcgagcgcga tatccgcaaa atcatattgg
     1261 aaaaataaat ctgcaatgtg gctattaatg ctgtcatgat aaacgttacg aagtgccaat
     1321 aagtaatcag caaactcgcc ttttccaagt gcaatcgccc gctctaatac aaataaataa
     1381 cgtttcttgc taattcgtgg accgttttca aagataaaat cataaatgtc gccaacatcg
     1441 ctatttttca tgacacgttc gattggtaat tgcggatttt catagtgcca caaacataag
     1501 tcagctgcat caatcaactc ttctttaata ccgaataaaa tagcagattc gctaattacc
     1561 gggaagacgt tgcggatcgt tgcaatcttc acctctgttg cttctgcgat aggtggatac
     1621 acatcggtta gtgattgaac aattagttca gataattctg cgtagccttg ttgggttgtc
     1681 atcgaaagta agcgcaaacc agtttctgtg ctagagataa agtgatgacg ttccataaag
     1741 gcaaaaattt cttttggttg atggaatttg ctaagcagca taatcatttg gaacatcaca
     1801 ccgtaatcag aactattttc cgcataggct ttagaaaaat gagtcatcgc gcgcgtataa
     1861 tctttttctt ctaagtaaat cgttccgagc attttgtgtg gcatgaaatt ggttgcttcg
     1921 taaagcacga ttgattggta gtcaattgct gtattttcta gcagactttg ataaatttct
     1981 ttcgcatctt cgagttggtg attcacatat aaaatattag ctttttttag tgggaactct
     2041 ggtacgtttg gccaaatgat tcttgcttct tcgataatgg ccaagctttc atcatagcgc
     2101 ttttcttgtt cgagtagttc ggcaatatga taagcactta gtttcgccca aatgtagtga
     2161 ttgtggtcac gtagtcggaa cgcttcggaa aattctttca gcgcttcctt cttattacca
     2221 agtcggttca tttcttgccc aatgttaaaa tgtacaaatc cgctattttt attgtttttt
     2281 acttcttttt ctaataaacg taaattacgg tctgatttgt cttgtttttc gacaatctcc
     2341 gtcatatagc cataatgata aatttttact tcagcaaccc cagctgcaat cgggtgtttg
     2401 tctaccgctt ctagttgttc atgaatgacg ccacggaagc aaatcgttcc gtcattttta
     2461 taaaccctcg ccatttggtt cgttgttgtc actcgccctt tttcccctgt aaagctaata
     2521 atttgcgcca tttgaattgg ttcgattggt gattttaact gtttttctaa tttgcgataa
     2581 ctttcttctt ccaaacattc gtctgcatca atcgctaaaa tccatttgcc cgttgcatgt
     2641 ttggccgcaa agtttcttgc atcagaaaag ttgccagtcc attcaaagtc atagacaaaa
     2701 tcagtgaatt cttgtgcaat ttccttggtt tcgtcagtgg aacctgtatc tacaataatg
     2761 atttcttctg taaattttct aaaagacgct aaactttgtc gtaaaatatg tgcttcattt
     2821 ttgactatca tacaaatcga aattaacggc cgcatgaatc ttccctcttt ctatcaatta
     2881 attcactaat tttattttat cgctgctcgc tcggtgcagt agatgttttt tcgcttttgg
     2941 caaatcataa atcatacttt gcacatcgaa cgatttcgcg acatcgactg gtatcacatc
     3001 agtcggctta tccccgttat aaaaacaaca aaccaaatcc attttactaa caatttgtgc
     3061 taagaatttc tcataagtcg gcttagcaat caccgtatcg aaataaccaa atgactgata
     3121 gctactgcct agacattcca gatagtctat cgtcgataaa aacggctctg gcaaacattc
     3181 tttcggtgca aaagtgtaaa tcgatagtcg cggtgccaga tgctcttttt tcaagaaaaa
     3241 ttgtaacact tcattttcaa tcgacttata acaaagcaag tgaatgtggt tcactggtgc
     3301 aaatttttcg aggtatgctt gtatttcttg tttgtcatag tcggttaacg tatgcgaacc
     3361 acttaaaaaa agttgcaaac acttcaccta ctcatcttca tctagcgtat cgcgattaat
     3421 tgggcgtacc atgatttcta cacgccgatt tttttcgcga tttgctgcga tatcattttt
     3481 ggcgacaggt ctgaattctc cgtagccgcg agcactgaac tcgcctgggt ttacttcgct
     3541 attttcttga atgattgctt ccatgaaatt aacggcgcgc gcgacactta attcccagtt
     3601 ggaagagtaa attgaggtgc ttattggcac attatcggta tgtccagaaa caatcccttc
     3661 catcgttcct tttccttgcg caaaaagttc gccgatttct ttggcaatct cgcgttttcc
     3721 tgcagttaat tctgcacttc ccgactggaa taaaatatca tcacggatag ttatcaaaag
     3781 cccttcatcc gagtatttcg ttgtcatttt tgctcccaaa tgttctgctg caatataact
     3841 atcaatttgt tttttaaagg cttcaatctt ttcttcgttt tgctttttaa gtaaggccgc
     3901 tgctgctttt ttggctttct cttgttcggt tgcttctttc tttttatctt gctcttccat
     3961 cgccttcaag actgcattca cattaggatc atctggtcct ttttctttgg atacatatgc
     4021 ttgattgcct gccgcgcctt cctctacaat tttcttaaat gcatttccca tttgttcaaa
     4081 cttcttagca tcaacggaac tggaggcaaa cagaacgatg aatagcgcaa gtaaaagtgt
     4141 cagcaaatca ctatatggaa ttaaccacgt ttcatcaacg tgttcctcct gcggtttctt
     4201 gcgacgcttg gccacgctca atttcctcca cttctctcgt tttcttccct tttccatttc
     4261 gcagcacatc tttctctttt ggacttaaaa aagataataa acgttcttcc acaacccgtg
     4321 gtgcatttcg ctcttgaagc gcgacgactc cctcaatcat catatatctc aaatgcactt
     4381 ctttttgtga tttcactttt aatttattgg caaatggcgt ccaaagtacg taaccggtaa
     4441 aaataccgaa aatcgtacaa acaaacgccg cggctattgc ttcgctaagt ttgtccgggt
     4501 tcgacatttc ccccatcgca tgaatgagtc ccatcgctgc tccgagtaca ccaagcgtcg
     4561 gcgcatatgc tccagctgat gcaaaaatct tcgcataagc agcatggcgt tcttccatac
     4621 tcgctacttc ttcttccaaa acgtcccgta aaaattctgg ggaagactgc ccatctacaa
     4681 ctaagcgcat gcctcgtttc ataaatggat cttcaatttc atcgacagaa tcttccagcg
     4741 caagtacccc gctacgccta atttcgtctg cgtattcttt gtattgcacg agtacttcca
     4801 ctttgtccgg catcttctct tttgtgaaaa gaattttaaa aagtttcggt actactttta
     4861 catcactcca tgggtgcgcc atcataacag ccgtaattgt cccaagaatg atgacaatta
     4921 aagcttcagc gctaaataac atcgccagtg atatattttg aatcatgaac gaacctgcaa
     4981 tgactatcac tgccaacaca agtcctataa tcgttgttat ttccacgtta cttcatctcc
     5041 cacctactta tttcagcgaa ctaattccac ttcatttaac caaaaggcaa ctaactcgtt
     5101 ttccatttct ggtaaatgaa cgaaaaacgc tttagcatcc gcttcactgg caaatgcttg
     5161 cgagcggtag ttatcttctc ccacaccttt taaagcgaga aaataaaatg actcgagtcg
     5221 gcctagaata acttctttat ccccgatttc atagccaact gtttgtctaa tttcaaattc
     5281 atttggtaag aaaagttgtg ttttcttttc aagcatgaga atttgttctg cgagtccagg
     5341 tttgtcctca aaaaacgcta aatttttaat gttttctatt cgtcccatct aaccaactcc
     5401 atttcttttt tgctaggttt ttatgtagaa aaaattattt aatgtggcaa gcccgtaatc
     5461 agctgggttc aaaatctgtt ctgacccgcc gatgaaaaga acgccgccac gtcttagtga
     5521 ctctgcaaac ttctgatatg cttggtgttt tccttctgct gtgaaataaa tcaacacatt
     5581 acggcaaaca attaaatcaa aacctttttc gtaataatcg gtcagcaaat cgtgccgtct
     5641 aaaacgaatc gactttcgat atttaggcaa aatctgatat gtatcccctt tttcaacaaa
     5701 tgccgtatga cgttcttgtt cggttagttc ttccatttga cggctttgat attctccaat
     5761 gaccgcgcgt tttaaaatag ctggttcgag gtctgtggct aaaatatcat aatgccttgt
     5821 gccaactgaa cgttccatca tcatcgctag cgagtacggt tcctcccctg atgaacaagc
     5881 cgcactccaa acccgtaact tcccgcgact atcttccagc aaccttggaa gtacttgttt
     5941 ttccagcgca tcccagcgat tgcgattacg gaaaaacgac gaaacattaa tcgtaatcaa
     6001 actaatgaac tcatctaaaa gaacggcatc ttttttgaga tgtttgaaaa attctccaaa
     6061 tgtaatatat tgcttcttca cgataaaaga taaaattcga cgtttcattt gcgtttcttt
     6121 ataaagcgct aaatctaaac ctaagtccct tttgacgaca cgagtaaagt aaagataatc
     6181 cttttccaaa tctggaatca ttctttttcc cctcccccta gctaggtcgt tactgacgaa
     6241 ttaatccagt tgcttctttg tcgtacactt tatcaaacat attaacgaca ttttttgaag
     6301 cttgtaccat gcgctggtta tccatgagtt gtaccatttc tacgcctaaa tcaacattag
     6361 acgtttcgat aactccattt tggataatcc cttgtccagc tggtaaattc attgtgttta
     6421 tgccatttac atgaagtcta ccttcgccgt ctttcaccaa actatctgct tgattagcgg
     6481 aaacaaattt ggttccaagg cggcccaagt attgacctgt ttccgcattg tataaatcac
     6541 catttgcttc ggcgcgaatc gacgtttttt gccccacttg aatcgcttcc ccagtcgcac
     6601 tgagtaaatt ggcgccatct gctgtccgca gaaaaccaaa ctgatcggag tgaaactgcc
     6661 cgccacgtga aagtgaaatt tcgccatttt tagcagtgat gaaaaaatta cttccttgcg
     6721 taggatccgt gtcttgcata aagaaatctc ggtcgcggtt cgtaatatag cttgatcccg
     6781 ctgtcaaatt aatatgcgtc gcagcaggtc gaacaccgta atcaattgtc ccaacttgcc
     6841 tagcgacagg cccattttga tagttcactt tgtttcgcga aatcacttca ctcgtaagct
     6901 gatcaaattt gaatcctggc gtctgcgcgt tagccacgtt attagaatga acttgaatat
     6961 gttgcatgta gttcatcatc cctgctgcgc caatgtataa ccccttcatt ccagcacccg
     7021 ccttctatct gtcccaacaa accgctccgc taaccaacga ctttttggtc tgaaaatatt
     7081 ttccgtaata ttttgtccat ctgtcatgta taacaccggc aaatttgttt cttgcatcac
     7141 cgtgtataaa tcaccaatac gcgtcgtttc atccattttt gtaatgataa aaccatcgat
     7201 tggaatttct gctagttttg gtaaaatcgt catcacatcc gcacttttca ttccagaaga
     7261 aaatgtaaaa cacgttaagt ccggatgaac aacatcggta taggcagaaa tttcactcac
     7321 tgattcctcg gctaagtaat ttctcccaac cgtatcaatc aaaatatgat ccacgcagtt
     7381 aacatacgtc atatactgca cagcttcttc tagttcagcc gggctcgtcg caacgataag
     7441 ctccacatcg agtttgtccg cataaccttg gaactgctcc actgcgcctg accgaaaagt
     7501 atctgtagtg ataaagccca ctgtccgatt ttgctttaac agctgccatc caagtttcac
     7561 aagcgtggtc gttttcccaa cacccgtttg cccaatcaag gaaataattc ggtggttgct
     7621 taaatcaaac gaatcttcca ccgctaattt tccggataaa taaggaacga accaatctgt
     7681 aatatcatcc aaatgcgccg tttctacttg cttaaactgc ttccgcccag cctgcatgaa
     7741 gtccgccaca tacgtatcac taattccgcg acccttcaaa aacttcacga aatcactgtt
     7801 ttgttcacgc tcctcgcgca ttttcactgc aagctcgcgg tttaaagccg ctagttcgag
     7861 acgcatcgct gacaattctt cttcctgtgt ttttcgttct tctaaaagcg gcgttgactg
     7921 tgctagttcc gctcccgcag caagcatttc tagtaatttt tcttttttta ataagtcgtc
     7981 tgttttcggt ctgtttttga caaccgattt ttgaaatgtt tcttgaaagt ccattcgacc
     8041 atctgctatc gccacttcac tcataatgac cgccgtcact tcatactgtt tcttaaaaat
     8101 accaagcttt gtgacacgtt catccgtaat tttatatggc tcattcgtga ctaagcgaat
     8161 ttttttatgt atttctcgct tggagttcgc cttaaaaatt tccatctttt ctactaaatg
     8221 ttttcccatt tctacggatt acctccctca tcaagttggt tcaatcagtg caatttgctc
     8281 cacttctgtt tccggcgaca gttcactaat ggagagcacc ggcacgtcca attgatatct
     8341 ttccaaaact cgcacaaagc caaatcgaaa atcttttcgc cttgttaaaa tgacaggttc
     8401 acgaccagtg agttgcgctt tattcacggt atctcttact ttttgaatga ttggcagttc
     8461 cttgtcgagc gcccagttca gcgcgtagcc ataatacggc gtgttgacaa tttctgtatc
     8521 catttcaatc gaatcttgca aaagtagcgc gtaaattttg ccatcttgat ttttcgcttg
     8581 ttcacaaatg actttcgaaa tccgctccct gacaaatgcc gtaatgccat caagatcatt
     8641 cggataaatc gtttgtccat caataatccc ttcgacaatc gttggtaaat cgcgaaccga
     8701 aatcccttct ttcaagagtt gtcgtagcac cccttgaatt agcgaataat caatttcttt
     8761 tttcttaatt tcatcaatta aaatttgatt ttcatcagca agtccgtcaa ttaaatcttt
     8821 aatttgttgg cgcatcagaa gctcatgcaa gttcttccgc agcacaacat ccaaatgcgt
     8881 aattaaaata ctaagcggtt cgagcacttg atagtttttc atctgcgcat cttctaactc
     8941 acccggcaaa atccagtaac catcttcccc gaaaatcgga tccttggtcg gctccgcatc
     9001 aaggtccatc atcacgcctg gtgtttttag cgctaataaa tgtcctgcct ttaaaacccc
     9061 gctcgcaaca gccacacctt tgaccttaat ctcatatttc ccgcgcggct gaaaactcgt
     9121 attatcttta aaattaatcc ccgggacccc aatacctaaa tcttgtaaaa ttgattttcg
     9181 cattaagacg actttatctt ttgccgtttc tccgttcatt ttttgtttca cgagagccgc
     9241 aatgtttaag ccaagttcca caactacagg gaatttttct cgtgctgcgc caaatgcttg
     9301 attgtgttcc gcttcagcag agctggtttc cgactggata agctccattt ctttttcaag
     9361 ttccaattgc tcttttttct ttaaattgaa ttgcgtacga tagccgatta ttccaagcac
     9421 tacgccaatt ccaacaaatg gaatcgttgg tagtgggcta aatacaccca ttaagataaa
     9481 catggcagcg agcgtataaa cgaccaccga gttttgcatt aattctttga aaatcccgac
     9541 cgcaacgtta tcatctgatc cgtcaaatac ccgagttaca ataaccccag ctgacatcgc
     9601 cattaaaagt gaaccaatct ggctcacgat gccatccccg attgttaact ccgtatattt
     9661 caccgcagct tccccgaacg aaagcccacc ttggaccata ccgacaatta aaccgaatac
     9721 aatatttaca actgcaagca aaacggtaaa aagaacatcc ccttttacaa atttcccagc
     9781 tccgtccatc gctccgtaga attcggtttc catattcaaa tatgcgcgtt tttctttcgc
     9841 ttccggctct gtaatcaacc gttgattcaa atccgcatca atcgccattt gtttaccggg
     9901 caaagcatcc agcgtaaatc ttgctgctac ctccgctgtc cgcgaagaac catttgccac
     9961 aataaactga aagacgatta aaataatgaa aataacaatc ccaacaacaa aattactacc
    10021 aataacaaaa ttcccaaatt gtttaattac ttgtcctgga tcaccagtag ttaagatcgc
    10081 ccgtgtcgtc gaaatattta tcgaaacccg aaatatcccc atcaaaagta gtaaagacgg
    10141 aaatgacttt aattcattcc aatctttaat tgatgtggca cgcatgtaaa ctaacacaga
    10201 gaacgccaag atcgtcacaa gcactaaatc caatacaaac ggaggtaatg gcacaataag
    10261 tgcaataaca aacgagaccg caatcaagat agcaaaatat ttttttatag cacctaaatt
    10321 ccccattttg aaacctgcct tttctaagat tagaaaggtc gctcatatgt tgttagaact
    10381 tgattttgtc tgcgtccatc aattctttca tcacttcaat aacatcttta tataaatctt
    10441 cttgtatgta ttcatctgga ttcgtcgtat agtaaatact tcgtgccagt tgtctatttg
    10501 taatcatcgg caccccgtcc gtatccgcca cctgacgaat aaacagtgcc agctcgtctt
    10561 cccctttaac gagcaatttc ggtgcatgat cttttgtttt gtcataacgc atcacaacgg
    10621 aaatatgtgt cgggttgttc accacaaaag tcgcgtccgc catttttttc gtaatcgaac
    10681 cttggagaag cccacgcgca atacttcttt ggcgctgttt cacttccggt cgaccttctg
    10741 aatctttcat ttcgtcctta atttcttgct tcgacatccg caagcctttt ttatagtcat
    10801 aacgctggta aaagaagtca agcagcccta ttactgcgat tacaaggaag agcgccagaa
    10861 attcattttt gaataaagcg aaaatttgtc cgagtgagta aagccaattt tgcccggtgt
    10921 aactaatgag cgtgtctaga tgatcccgaa agccaatata cgccacgtat gaaagcaacg
    10981 taattaaaag tagcgctttc accacctcga caattccctt cacactgaac actcgcttaa
    11041 agtagttcgc tggatttagt cgtttgaact gaggtttcac tgctttcgcg gaaaataaaa
    11101 tcccgacttg cacgccgtag ttcatcaaac caaaaatcac aaccatcacc ataatcggca
    11161 tcaacacttt gccaaactcc atcaagtaaa acaaactgta actttccatg ttcgcaagct
    11221 tcggtggctg tttcaaaaga gcaacaaatg cttgaatcgt gtttttaata aacatttctc
    11281 caaaaaaata aagaagccca gctacaatta gcagtgaaaa agcattattt agttctttac
    11341 ttttcgccac attaccttca tttcgagctt tcttaatgcg gcgtggcgtt gctttttccg
    11401 tcttattatc cttcgccaag cttttttctc ctccctattt tttcagtaaa taatcaaaaa
    11461 acgacacata ttgttgaatc atctcatctg tcaaattttt aaaaactgta ctcaagatag
    11521 gaacagcaca cgcaaggatg aaaatcccaa acgtaatttt tataataaac gcattcataa
    11581 aaatgttaat ttgcggagcg ctcttagaga taaaagcaag aatgatatta acgataaaaa
    11641 tactacccat aatcgggagc gcaatcgaca ccgcggaagc aagtgcaaaa ccaagcgtcc
    11701 caagcagcaa atcaataaac cctttttcaa ataaaatcga caccgaagcc gtaaattcaa
    11761 acgatttcat taaataataa atcaagtaat ccatgccttg aagtgacaaa aatatcacta
    11821 caaagaaagt atctaaaatc gcagcagtaa tcgagttttg tgtcccgtaa gaaggatcaa
    11881 tcaagtttac ttgcgaaaat cctaaatcat aatcaatcat aaaaccagcc atttttggaa
    11941 ttaccgcaat aatttccacc aatttcgcca gcgctaatcc aaaaaccact tcagacgtta
    12001 cccggagtag caaatctggt agcgtcgtta taccagaaac atcgacccct gttgccactg
    12061 gaatggaaat cgccatccca aaaaccactt tgacactgtt cggaatgttt cgccctttta
    12121 aaagcggaaa gaagaataaa aaactggcaa ctcggctgaa aacaatcact accgcaagga
    12181 aaaattcaaa ctccatgttt acaccctaat catcaggggt aatttggaaa agattcctac
    12241 aaacaaatcc gtcatgtgtt caaacatcca cggtccaaga ataaatagcg ccactacgaa
    12301 agcaacaatc ttcggtaaaa acgtcagcga ttggtcttga atttgcatca ttgccatcaa
    12361 tatcgccacc acaatcacta ccacgataca aatgagcgac accggcaaaa taagcgccag
    12421 cccactatag aaaaaatctt gaaaaatttg cgtaatcggc gttaaattca ttttgctact
    12481 cccttaaaag tgaattgttt gaaaaatcat gttggtaatc aatccgtacc caccaatgaa
    12541 aataaaaaca agaatcttaa acggtaagct aatggtcatc ggcggtacca tcatcatccc
    12601 aagatacatc agtaacgtac taacaattaa atctataaaa ataaacgcta agtatataaa
    12661 catcccagtt aaaaaacctt gggtaatctg tgtcaaaata aaagcaggca ttaaagccat
    12721 aagcggagca tcttcttttt ttgtaactgg atcttctcct tctgctttca acatcatgtt
    12781 aatatcatgc ttatatgtat tttccgcgac atattttgtc aaaagcggct ttgtttcatc
    12841 ccatactttt gatgcgctcc actcttcttt ttgcgaaggt ttatacacat cgtcatacca
    12901 agcagtaata agtggttgca tcataaacaa agataaaaac agtgccagtc caacaagcac
    12961 ttggttgggc ggcaagttcg tcgcgccaag cccttgcctc gttaaaccaa gaacgataat
    13021 acagtaagta aagtgtgtga acattaatac aatcgatgca gacaaagaaa gaaccgtaac
    13081 tagtacaaac agcgccacac tagaattaac cccatccgtc ccattcacac caagtgagtc
    13141 cagccaactt tctgcatgca cattcacccc tggccaaaag acaaccaatg aaattgcaaa
    13201 aataacaata aaagatactt gaaatactcg tctagaagct attttacgca ttttccttag
    13261 tctcctcttt caaaagtaat tctcggaaaa gtgcttcatt ttggtcagtt tttcctttta
    13321 atgacaccgt tcgaatatca ttattggaaa taatcgccag caccttttcc ccgtctgcct
    13381 ccagaagaac tgcacgtaac tgatgagaga ttaaaagagt gtctttcaac tttataagat
    13441 cattttcgct ttttctcgtg cgattcgctt gcttgttttt cttaactaaa aaataagaaa
    13501 ttcccgcaag tactgctaaa agtacaataa tttttaaaag tgataaaaaa tattccattc
    13561 aagtaaggta aattcacctt tcactccctt catcagatta caaaaataaa tcattttttc
    13621 aaaatatata tcaataaagt gttttttgta actgcaatat aaa
//
LOCUS       DASDXX010000059        13619 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.059, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000059 DASDXX010000000
VERSION     DASDXX010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13619
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.059"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..753
                     /gene="dnaN"
                     /locus_tag="U0280_001365"
     CDS             <1..753
                     /gene="dnaN"
                     /locus_tag="U0280_001365"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM2271316.1"
                     /translation="GKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLS
                     AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILF
                     KLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIK
                     LMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQI
                     SFSGTMRPFVLRPKDAANPNEILQLITPVRTY"
     gene            861..2204
                     /locus_tag="U0280_001366"
     CDS             861..2204
                     /locus_tag="U0280_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2271317.1"
                     /translation="MMKDMTTGNPTKLIFLFAMPMLIGNLFQQFYTMIDAVIVGKFVS
                     VDALAAVGATNSVNFFMISLIIGLMSGISVVVAQYFGFKDFDRLKDVIATATYAVVFS
                     AIILTVAGVLLAKPLLILLRTPANILDDSTIFLTTLFIGILPMSLYNGMAAILRALGN
                     SITPLIFLILSSLMNIALDFLFVVYMDMGVRGAAIATVLSQTAAAIAVIYYAYRHVPF
                     MRIERAKFKLSTPLLKEMVRIGLPSGLQGSFISIGNMALQSLINGFGSSVVAAYTAAS
                     RIDSLTYQPGIAFGAASSMFAGQNIGAGKIDRVREGFWSGIKVVTAISIGITILVQLF
                     AREFLLLFVDSSETEVINIGVSYLLIVSLFYVVVGVLFVVRETLRGTGDAMVPLAMGI
                     FELVSRLVIGFVLSLYIGYIGLWWATPVAWITATMLGVWRYKSGAWQKKAVIRRK"
     gene            2384..2605
                     /gene="yaaA"
                     /locus_tag="U0280_001367"
     CDS             2384..2605
                     /gene="yaaA"
                     /locus_tag="U0280_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HEM2271318.1"
                     /translation="MAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGE
                     QDNRRGKKLRNGDVILVPGVGKVKIEQGK"
     gene            2609..3721
                     /gene="recF"
                     /locus_tag="U0280_001368"
     CDS             2609..3721
                     /gene="recF"
                     /locus_tag="U0280_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEM2271319.1"
                     /translation="MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVL
                     MLALAKSHRTTNDKDFIMWEKEEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQK
                     KLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQR
                     NQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGL
                     ETLKIEYKASITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQ
                     NVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIE
                     GKVQTFVTTTSTSGIDHETLKQATTFYVEKGTVKKS"
     gene            3770..5710
                     /gene="gyrB"
                     /locus_tag="U0280_001369"
     CDS             3770..5710
                     /gene="gyrB"
                     /locus_tag="U0280_001369"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEM2271320.1"
                     /translation="MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQR
                     GLHHLVWEIVDNAIDEALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVE
                     VIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDV
                     VMDMEEQGETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDK
                     REEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSS
                     NIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAI
                     ISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASR
                     ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDR
                     LFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMT
                     DADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDY
                     LASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEMLMG
                     DRVEPRRKFIEDNAQYVKNLDV"
     gene            5805..8333
                     /gene="gyrA"
                     /locus_tag="U0280_001370"
     CDS             5805..8333
                     /gene="gyrA"
                     /locus_tag="U0280_001370"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEM2271321.1"
                     /translation="MAETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKP
                     VHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNM
                     LVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVIL
                     PARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDF
                     PTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVER
                     IAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM
                     LALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDA
                     IIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVAL
                     INDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAI
                     TLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKV
                     YRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKR
                     TTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG
                     RTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKT
                     VTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDE
                     KVATVAKVPKEEDEVELEEEIDETLITQVPDESFEDAPGSDIEE"
     gene            8467..9981
                     /gene="cls"
                     /locus_tag="U0280_001371"
     CDS             8467..9981
                     /gene="cls"
                     /locus_tag="U0280_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM2271322.1"
                     /translation="MRKLIQFLFIAVVLFLVEYFLINQAAILFLVTSGLIQLCGLIIV
                     IRLLLFDQRNTSSKVAWIAVIFILPVLGTISYLVFGRNPATRKFSTAQVMEKAKLINA
                     IHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTNGEETFPVLLDALRKAENHIH
                     IQYYIFKTDEISTEIRDILVEKAKSGVEVRFMFDGLGSSKLHKAFLAPLKEAGVSIHA
                     FDPITSPWIVRTANLRNHRKIVVIDGQIGFTGGLNIGEEYRSNTPDFRVWRDTHIKIT
                     GQAVIELQESFLNDWVYMENQAGAADQFISEAGLQQYFSPVDVGDEWAQVIYGGPYDK
                     EKWVRDSMLDLIDSAKESVWIVSPYFVPDEESLAVIRRVAMSGVDVRVIIPGKGDRGI
                     SFHGSNAYVKTMIEAGAKMYAYADDSFVHAKAMLVDGTRAAIGTANFDVRSFRLNHEL
                     MVFLYDESEAMHHLKRDFEKDFEDSRLFTMKDMENKPLLTRIKEVLSSLLSPIL"
     gene            9997..10515
                     /gene="speG"
                     /locus_tag="U0280_001372"
     CDS             9997..10515
                     /gene="speG"
                     /locus_tag="U0280_001372"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HEM2271323.1"
                     /translation="MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQE
                     LYDKHIHDQSERRFILELDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSAT
                     KLAMKYAFHVLNLHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRM
                     CIFQHQYQEMDI"
     gene            10657..11625
                     /gene="mvk"
                     /locus_tag="U0280_001373"
     CDS             10657..11625
                     /gene="mvk"
                     /locus_tag="U0280_001373"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEM2271324.1"
                     /translation="MATGIGTAKMILCGEHAVVYGEPAISVPFTQAIVTTNVENSTKT
                     KFSSAFFSGDLDDMPDFLAGIKALVVDVLNEIGKGECVSIHVVSGVPIGRGLGSSAAV
                     ATSIARGLYKYFNQELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEKPVWYERDRKL
                     EIMHFSKKITFVVADTGVPSETRDAVKDVQALYKENQTEIGKIIHQLGDISREIKTHL
                     EGDADTVKIGAAMNKAQSYLETLTVSDSSLEKLIEVARSSGADGAKLTGGGRGGCIIA
                     VAKNQEIAEQITKELHNAGAAQEWIFTIGEGSYESDSHRTHECGAN"
     gene            11582..12553
                     /gene="mvaD"
                     /locus_tag="U0280_001374"
     CDS             11582..12553
                     /gene="mvaD"
                     /locus_tag="U0280_001374"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HEM2271325.1"
                     /translation="MRATAIAHTNVALIKYWGKRDEHLILPANSSLSFTVDKFYTKTT
                     VEWDENLAQDTFILNNEQKTDAKVARFIDKMREEFGISAKAKITSENHVPTAAGLASS
                     ASAFAALALAGSSAAGRKDTKEYISRLARFGSGSASRSVFGDFVIWEKGELADGSDSF
                     AVPFTNKLCDKMSLVVAVVSDKEKKVSSRDGMRLTVETSPFFEKWVSAAETDLEEMKQ
                     AILDEDFIKVGEITERNGMKMHATTLGAEPPFTYFQPKSLEIMDAVRELRENGIPAYF
                     TMDAGPNVKVICERENENIVADKLSGLAKNVLICHAGKEASVVSDEK"
     gene            12534..13613
                     /locus_tag="U0280_001375"
     CDS             12534..13613
                     /locus_tag="U0280_001375"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HEM2271326.1"
                     /translation="MYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTL
                     EDSERNELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINIATTFLKSEGIELTPVKM
                     VIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNG
                     SCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSV
                     GWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIK
                     ENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAE
                     KLVNEWEKLGIKHLPFHTGRVQITE"
BASE COUNT         4373 a         2306 c         2943 g         3997 t
ORIGIN      
        1 ggaaaaacaa ttaaaattcc aattaatgta cttaaaaata ttgttagaca aactgttttt
       61 gctgtgtctg cgattgaagt tcgtccagta cttactggtg taaactggat tatcaaagaa
      121 aataaactaa gcgcagttgc aaccgatagt catcgtctag ctttacgtga aatacctctt
      181 gaaacagaca ttgatgaaga atacaacatt gttattcctg gaaaaagttt atctgaatta
      241 aataaacttt tagatgatgc aagcgaatct attgaaatga cccttgccaa caaccaaatt
      301 ctttttaaat taaaagattt attattttat tctcgtttac ttgaaggtag ttatccagat
      361 acatctcgat taattccaac tgatactaaa tcagaattag tcattaattc caaagcattt
      421 ttacaagcaa ttgaccgtgc gtccctactt gctcgcgaaa atcgtaataa cgttattaaa
      481 ttaatgacgc tagaaaatgg ccaagtagaa gtatcatcca attctccaga agttgggaat
      541 gtttctgaaa atgtcttcag ccaaagtttt actggcgaag agatcaaaat atcttttaac
      601 ggtaaataca tgatggatgc cctacgtgct tttgaaggtg atgatattca aatttccttc
      661 tccggtacaa tgagaccatt cgtacttcga ccaaaagatg cagccaatcc aaatgaaatt
      721 ttacaattaa tcacgccggt tagaacttac taatctcgca aaaagcacat ccgtcttggt
      781 ttcaaggcgg attctttttt tgttatagta cagtttttgg atagaaatgt atatttatgc
      841 aaacggaggt aattcttagc atgatgaaag atatgacaac aggtaatccg acaaaattaa
      901 tttttttatt cgcgatgccg atgttgattg gaaacttgtt tcagcaattt tatacgatga
      961 ttgatgctgt tattgttggg aaatttgtca gtgtagatgc gctggctgct gttggagcga
     1021 caaattcggt caattttttt atgatttctt tgattattgg acttatgagc gggatttctg
     1081 tcgtagtagc gcagtatttt gggtttaaag attttgatcg tttgaaagat gttattgcaa
     1141 cggcgactta tgcggtggtt ttttcggcga ttattttaac tgttgcagga gttttgctag
     1201 caaagccatt gctaatttta cttagaactc cagcgaatat tttggatgat tctactatct
     1261 ttttaaccac tctttttatt gggattttac cgatgagtct gtataacgga atggccgcga
     1321 tacttcgggc gcttggaaat tcgattacac cgctgatttt tttaatttta tcgtccttaa
     1381 tgaatattgc acttgatttt ttatttgtcg tatatatgga tatgggcgtt cgcggggctg
     1441 ctattgcgac agttctttct caaacagctg cagcaattgc cgttatttac tatgcttatc
     1501 gccacgtacc atttatgcgg atagagcgcg caaaattcaa gctttccacc ccactactta
     1561 aagaaatggt gcgcattgga ctaccttctg gattacaagg atcctttatt tctatcggaa
     1621 acatggctct tcaaagttta ataaatggat ttggttcatc ggtcgttgcg gcatatacgg
     1681 cggcgagtcg aattgattca cttacatatc aaccaggaat tgcttttgga gcagcttctt
     1741 cgatgtttgc tggtcagaac atcggtgctg ggaaaattga ccgcgttcgc gaaggttttt
     1801 ggtcgggaat taaagtagtt acagctatca gcattggaat aacgatttta gttcaacttt
     1861 tcgctcggga gtttttatta ctatttgttg attctagtga gacggaagtt attaatatcg
     1921 gtgtaagtta tttacttatt gtctctttat tttatgtcgt agtgggagtt ttatttgttg
     1981 ttcgagaaac actcagaggc accggagatg cgatggttcc tttagctatg gggatttttg
     2041 agttagtttc gagactggtt atcggatttg ttttatcgct ttatattggt tacatagggc
     2101 tttggtgggc tacaccagtt gcgtggatta cagctacgat gctcggcgtt tggagatata
     2161 aatcaggagc atggcaaaaa aaggcagtta ttaggcgaaa ataaccattt tagtaaaaaa
     2221 acgccagaga agctcatatt ttcttttttt taataaataa tatcccccca ttagttttgc
     2281 taaaaaaagc tgaaaaacga atatatgaaa atattctttg tattattggc aaaactttag
     2341 taaaatagaa ggtagtgata aaaaaagatt gggcgtgaaa tttttggctg aaacagtaaa
     2401 gataaatagc gagttcgtaa cgcttggtca acttttacaa atgattgatg tagtttcaac
     2461 tggtggaatg gcgaaagcgt accttagtga aaatacgatt tacatcaacg gagagcaaga
     2521 caaccgccgg gggaaaaagc ttcgtaatgg cgatgttatc ttagttcccg gtgttggaaa
     2581 agtgaaaatc gagcaaggaa aataacagat gcatttagaa agtattgttt taagaaattt
     2641 ccggaattac gaaaacttag aactagaatt ttccccatct gttaatgttt ttcttggtga
     2701 gaatgcacaa ggtaaaacca accttttaga agccgtattg atgcttgcac ttgcaaagtc
     2761 acatcggaca acgaatgata aagattttat tatgtgggaa aaagaagaag ccaagatgga
     2821 agggcgaata gcaaagcacg gacaatcagt gcctttagag cttgctatca cccaaaaagg
     2881 taagcgagct aaagtaaatc atttggaaca aaagaaactt agccaatatg tcggtaactt
     2941 gaatgtggtt atttttgccc cagaagattt atcgcttgtg aagggcgctc caggaattag
     3001 acgtcggttt ttgaatatgg aaattggaca aatgcagccg atttatttgc ataatctaag
     3061 tgaataccaa cgaatattgc aacaacggaa ccaatatttg aagatgttgc aaatgaaacg
     3121 aaaagtagat ccaatattac tcgacatttt gactgaacag ttcgcagatg tcgccattaa
     3181 tttgacgaaa agacgagctg atttcattca aaaactagag gcatatgcgg cgccaattca
     3241 tcaccaaatt tcccgaggac ttgagacgct gaaaattgag tataaagctt ccatcacgct
     3301 aaatggggac gatcccgaag tgtggaaagc agatttgctc caaaaaatgg aatcaatcaa
     3361 acaaagagaa atcgaccgtg gtgtcacgct tattggacca catcgggatg attctctgtt
     3421 ttatattaat gggcaaaatg tgcaagattt tggttcgcaa ggtcagcaac ggacaacggc
     3481 actttctata aaattagcag aaattgacct aatccatgaa gaaactggcg aatatccggt
     3541 tcttcttctc gatgatgtgc ttagtgaact cgatgattat cgtcaatcgc atttgctcgg
     3601 agctattgaa ggaaaagtac aaacctttgt aacgacaaca agtacgagcg ggatcgacca
     3661 tgaaacgctc aaacaagcaa caactttcta tgtagaaaaa ggtacggtaa aaaaatccta
     3721 atctaggtta atataatttg atgaaaaaga aagtgcggtg gaataattaa tgtcagaaga
     3781 aaatattaca aatgtacaag aaaatgcttc agattataac gaagatcaaa tacaagtact
     3841 ggaaggtcta gaggcagtaa gaaaaagacc tggtatgtac attggttcaa ctagtcaacg
     3901 cggactccat cacctggtat gggaaattgt tgataacgca attgatgaag cacttgctgg
     3961 tttttgtaca gaaattgaaa ttacaatcga agctgataac agcattactg ttcgtgataa
     4021 cggacgtgga attcctactg ggattaacga aaaaattggt cgtccaacag tagaagttat
     4081 ctttaccgtt ctacatgctg gtggtaaatt tggcggcggc ggatataaag tatctggcgg
     4141 acttcacgga gttggtgcat cggtagttaa tgccctttcc acatctcttg aggtatacgt
     4201 tcaccgtgaa ggtcaaaaat attaccaacg ctttgaacgt ggtgatgtag taatggatat
     4261 ggaagaacaa ggcgaaacgg attaccgtgg aacaattgtt cactttacgc cagatccaca
     4321 aattttcaca gaaacaacgg aatttgattt tgatacactt cgtactcgta cgcgcgaact
     4381 tgctttcttg aatcgtggtt taacgatttc aattgaagac aagcgcgaag aacacaaagt
     4441 tcgtaaagat ttccactatg aaggcggaat tcgttcttac gtggagcatt taaataaagc
     4501 aaaagacgtt atccatgagc caccaattta tttggaaggt gaacgcgatg acattatggt
     4561 tgagatttcc atgcaatata atactggatt ctcaagcaat atcatttcat tcgcaaataa
     4621 cattcatacg tatgaaggcg ggactcacga atctggattt aaaacggcgt taacacgtgt
     4681 tattaatgac tacgcgcgtc gtaataaatt gttcaaagat agtgatgata acctttccgg
     4741 tgaagatgtt cgtgaaggtt taacagcaat catttccatc aaacacccag atccacagtt
     4801 tgaaggacaa acaaaaacaa aacttggaaa ttcagaagct cgttcaatca cggataagct
     4861 gttttctgag gctttaaata aatttatgat ggaaaaccca gatgttgcta aaaaaatcgt
     4921 tgagaagggc gttgtagctt ctcgtgcacg tctggctgct aagcgcgcgc gtgaagttgc
     4981 tcgtaaaagc agtgggttag aaatttctag cttgccaggt aaactagctg actgttcttc
     5041 ccgtaaccct gaaatcagcg aactttacat cgttgagggt gactcagctg gtggttcagc
     5101 taaacaaggt cgtgaccgtt tattccaagc tattttgccg attcgtggta aaattttgaa
     5161 cgtggagaaa gcgcgtttag accgaatttt agctaacgaa gaaattcgaa ctatttttac
     5221 ggctatggga actggttttg gtggagattt cgatgtttct aaatctcgtt accacaaatt
     5281 aattattatg actgatgctg atgttgatgg tgcacatatt cgtacactac ttcttacgct
     5341 attttatcgt tatatgcgcc cactgcttga tgctggttat atctatattg cacaaccacc
     5401 gctttatcaa attaagcacg gtaaacaaat agaatatgta tatagcgacg gacagttaga
     5461 agactatcta gcttcccttg acggagacac taaatacagc attcaacgat ataaaggtct
     5521 tggagaaatg aacccagaac aactttggga tacaaccatg aatccggaac accgtacact
     5581 acttcaagtc aatatcaaag acgctattga tgccgatgaa acttttgaaa tgttgatggg
     5641 tgaccgcgtg gaacctcgtc gtaaattcat cgaagacaac gcgcaatacg ttaaaaactt
     5701 ggatgtttaa taaatatttc ccgggtaata attgggttat taattgtttt taaaaggttt
     5761 gaactagatt cagccttact tttgaaaggg aggtttctct aacaatggca gaaacaccaa
     5821 atcaacgaat aacagagata aacttaaata aagaaatgcg gacatcattc ctggactatg
     5881 cgatgagtgt aattgttgcc cgtgccctac cagacgttcg tgacggatta aaaccagttc
     5941 atcgtcgtat tctatatgcg atgaatgact taggtatgac ttctgataag gcctataaaa
     6001 aatcagctcg tatcgttggt gaagtaatcg gtaagtatca cccccacggc gatacagcgg
     6061 tttattttac aatggttcgg atggcgcaag attttagtta ccgtaatatg ctagttgatg
     6121 gacatggtaa ctttggttcg gtcgatggcg atatggcggc agcgatgcgt tatacagaag
     6181 cacgtatgtc aaaaatttcg atggaacttc ttcgcgatat taataaagat acaattgatt
     6241 atgctgataa ctacgatggt tctgaacgtg agccagtcat tttaccagcg cgtttcccta
     6301 acttacttgt caatggttcg tcaggtattg cggttggtat ggcaacaaac attcctaccc
     6361 accatcttgg tgaagttatc gacggcgttt tagcgcttag tcatgatccg gatattacta
     6421 ttcgtgattt aatggaatat atccctggcc ctgacttccc tactgctggg atgattatgg
     6481 ggcgtagcgg aatccgtcgc gcttacgaaa gtggccgtgg ttcgattact gttcgtggtc
     6541 gtgtcgatat tgaagaaaag aaaaatggta aagaaacaat cgttattacc gaaattcctt
     6601 accaagtaaa taaagcgcgc ctagttgagc gtattgccga actagctcgt gagaagaaaa
     6661 tcgacggtat cacttcccta aacgatgaat ctgaccgttc tggaatgcgc attgttattg
     6721 aagttcgtcg tgatattagt gcaagtgtta tcgtgaataa tttattcaaa atgacagcac
     6781 ttcaaactac ttttggtatt aatatgctcg cacttgtcga caatcatcca aaagtactta
     6841 atttaaaaga aattctttat cattatttag agcatcaaaa agtagttatt cgtcgccgta
     6901 cggaatttga gcttcgtaaa gcagaagcgc gcgctcacat tttagaaggt ttacgaattg
     6961 cactagataa tattgacgcg attattaaat taattcgtgg atcaaaaact tccgatgttg
     7021 ctaaagaagg cttgatgaca caattcaacc tttcggacaa acaagcgcaa gccattttag
     7081 acatgcgttt gcaacgttta acaggtttgg aacgcgaaaa aattgaagaa gaataccaaa
     7141 acttagtggc attaattaat gatttaaaag ccattttagc tgatgatgag cgtattcttg
     7201 aaattattcg tgaagaatta gaagaaatca aagttaaata cgcggataaa cgtcgtacag
     7261 aaatcttagc tggtgattta gtaagccttg aagatgaaga cttaatccct gaagaagaag
     7321 tggcgattac actaactaaa cgtggctata ttaaacgttt accattatca acttatcgta
     7381 gccaacgtcg tggtggtcgt ggtatccaag gtatgtctac tcatgaagat gatttcgtag
     7441 aacatcttgt tgcaacgagc acgcatgata cgttactatt cttcactaac acaggtaaag
     7501 tttaccgttc gaaaggttat gaagtacctg aatacggtcg taccgccaaa ggtatcccaa
     7561 tcatcaactt acttggaatc gaaagccaag aacaagtgaa tgccgtgata aatctatccg
     7621 aattcactga tgatagctac ctattcttta ctactaaaca cggtgtcgtg aagcgtacaa
     7681 ccctttctca atttgcgaaa attcgtcaaa gtggtcttcg tgcagttgaa cttcgcgaaa
     7741 acgatgaact aatctctgtt cagatgacag atggtagcaa aaacatgatt atcgcaacga
     7801 aacatggaca atctatctac ttcccagaag aaaatatccg cgtaatgggc cgtacagctg
     7861 ctggtgttcg tggtattaga cttcgtgaag acgatgaagt tatcggtatg gaagtccttg
     7921 aggatgatga aaaagttctc gttgtaacgg aaaaaggata cggtaaacaa acaccggctt
     7981 cccagtaccc gcttcgtaat cgcggtggta tgggtgttaa aaccgttaca atcacagaga
     8041 aaaatggtaa cttagtcgca atgaaaacag tgactggtga agaagactta atgctaatga
     8101 cagtaagtgg cgtattaatt cgtttcgaaa ttgatacagt atcacaaaca ggtcgtagcg
     8161 caatgggtgt caaactaatt cgtcttgatg aagatgaaaa agtagctact gttgcaaaag
     8221 tgccaaaaga agaagatgaa gttgagcttg aggaagaaat cgatgaaaca ttaatcacac
     8281 aagttcctga tgaaagtttt gaagatgctc ctggaagcga tatagaagaa taaaatcaag
     8341 ctggagatga ctctaatttg cgaattagaa cgattttcca gcttttttcc agtataaaaa
     8401 gcgctttttg gctataattt atgtataata tccttaatac gtcttaaaaa gggaagagtt
     8461 gaacaaatgc gcaaactgat tcaatttctg tttatagcag tagttttatt tttagtggaa
     8521 tactttttaa tcaatcaagc agctatatta ttcttagtaa caagtggact tatccaatta
     8581 tgcggattaa ttattgtgat tcggctacta ctctttgatc aacggaatac tagctcaaaa
     8641 gtcgcctgga ttgcggttat tttcatttta cctgtacttg gaacgattag ttaccttgtg
     8701 tttggtagaa atccagcaac tagaaaattc agcacagctc aagtaatgga aaaagctaaa
     8761 ttaattaatg cgattcacgc aattccaaac aacactaatg aaaaattacc acgactatct
     8821 aaaagaattg cgcatttaac gtccatagag ccaattaagg ggaataaaat cgaaatatta
     8881 acaaatggcg aagaaacttt tccagtgctc ttagacgcgc ttagaaaggc tgaaaaccac
     8941 attcatattc aatactatat tttcaaaacg gatgaaattt ctacagagat tcgtgatatt
     9001 ttggtagaaa aggcgaaatc cggtgttgag gttaggttta tgtttgatgg acttggttca
     9061 agcaaacttc ataaggcatt tttagcgcct ctaaaagaag ctggagttag tattcatgcg
     9121 tttgatccaa tcacatcccc atggattgta aggactgcca acttgcgaaa tcaccgtaaa
     9181 attgtcgtga ttgatggtca aattggcttt acaggcgggc ttaatattgg agaagaatat
     9241 cgttctaata caccagattt ccgtgtttgg cgcgatacac atattaaaat cacaggccaa
     9301 gctgttatcg aacttcaaga atcttttcta aatgattggg tctatatgga aaaccaagca
     9361 ggtgctgcag atcaatttat tagtgaagct ggattacaac aatatttttc accagttgat
     9421 gtgggtgacg aatgggcgca agtgatttac ggcggaccat atgataaaga aaaatgggtt
     9481 cgcgattcga tgcttgattt aattgattcc gctaaagaat ctgtttggat tgtgtcgcct
     9541 tactttgttc cagatgagga gtcgcttgca gttattcgcc gggttgcgat gagcggtgtt
     9601 gacgtgcgag ttattattcc aggcaaaggt gatcgcggga tttcattcca cggaagtaat
     9661 gcgtatgtga aaacaatgat tgaagcaggc gcgaaaatgt atgcttatgc cgatgattct
     9721 tttgttcatg cgaaggcaat gctagtggac gggacgcgtg cagctatagg tactgccaat
     9781 tttgacgtgc gtagttttag attgaatcat gaattaatgg tattcttata tgatgaaagc
     9841 gaggctatgc atcatttaaa acgtgatttt gagaaagatt ttgaagatag ccgactgttt
     9901 acgatgaaag atatggaaaa caaaccatta ttgactcgta taaaagaagt tctatctagt
     9961 ttactatcac caattttata atttaggagt gggaaaatga gtggagattt aaaacttaga
    10021 ccgcttgaac gagaagattt aaaatttgtt caccggttaa ataatgacgc gaaaataatg
    10081 tcttattggt ttgaagagcc atatgaggcg ttcgtcgagc ttcaggagct atatgataag
    10141 cacattcacg atcagtcaga acgccgtttt attttagaat tagatggcca aatggttgga
    10201 ttagttgagt taatggaaat tgattatatt cacagaagag ccgaatttca aattattatt
    10261 gatcctaagt ttcagggaca cggttacgct gtttctgcca caaaactcgc aatgaaatat
    10321 gcttttcacg tactaaatct gcataaacta tatttagttg ttgataaagt aaatgaaaaa
    10381 gctattcatg tctatgaaaa agttggtttt attcgtgaag gcgaactaat tgatgagttt
    10441 ttcgttgatg gaacttatca tgatgctatt agaatgtgta ttttccaaca tcaatatcaa
    10501 gaaatggata tttaaaaggt gattggcgcg ggaaaagttg cgccaatcat tgttttgggt
    10561 caaaaaaagt tctataataa ggttttagtg aaaaaattat ggtatcatga agtattaaag
    10621 tttgtactat tttgatggag aaaggattgg cgtacattgg ctacaggcat tgggacagct
    10681 aaaatgatat tatgcggaga acatgcagtt gtatacggag aaccggcgat ttcagtccca
    10741 tttacacaag caatagtaac gacaaatgta gaaaattcta caaaaaccaa attttcttcg
    10801 gcattttttt caggtgattt agatgatatg cctgatttct tagcaggaat caaagcatta
    10861 gttgtagatg ttttaaatga gattggaaaa ggcgaatgcg tttctatcca tgtagtttca
    10921 ggtgttccaa ttggacgagg tttaggttca agtgccgctg tagcaacaag tattgcgcgt
    10981 ggcttatata aatattttaa tcaagaatta gactcgaaaa aattattagc cattgtgaat
    11041 gcggcagaaa aaattgctca tggaaatgct agtggtgttg atgctatcac ggttgtgagt
    11101 gaaaaaccag tatggtatga gcgagatcga aaactagaaa ttatgcattt ttcaaaaaaa
    11161 atcacgttcg tagtagcaga tactggagtt ccaagtgaaa ccagagacgc ggtgaaggat
    11221 gttcaagctt tatataaaga aaatcaaaca gaaattggta aaataattca tcaactcggc
    11281 gatatttccc gggaaataaa gactcattta gaaggcgatg cagatactgt gaaaataggt
    11341 gctgcaatga ataaggcaca atcttattta gaaactttga cagtaagtga tagtagttta
    11401 gagaaattaa tagaagtagc tagaagtagt ggtgcagacg gggcaaaact tacaggtggc
    11461 ggtagaggtg gatgtattat cgctgtagca aaaaatcaag aaatcgctga acaaataacg
    11521 aaggagcttc ataatgctgg agctgcacaa gaatggattt ttacgattgg agaaggtagt
    11581 tatgagagcg acagccatcg cacacacgaa tgtggcgcta attaaatact ggggaaaacg
    11641 cgatgaacac ttgattctac ctgcaaacag tagtttatcc ttcacggtag ataaatttta
    11701 tacaaaaaca acggtagaat gggacgaaaa cttagcccag gatacattta ttctaaataa
    11761 tgaacaaaaa acggatgcaa aagtagctcg ttttatagat aaaatgcgtg aagaattcgg
    11821 tatttcagca aaagcaaaaa tcacttccga aaatcacgtt ccaactgcgg ccgggcttgc
    11881 ttcatcggct tctgcatttg cagctcttgc acttgctgga tctagcgctg ctggcagaaa
    11941 agacacaaaa gaatatattt ccagactggc tcgtttcggg tctggttctg cttctcgttc
    12001 cgttttcgga gattttgtca tttgggaaaa aggcgaactc gcggacggta gtgattcatt
    12061 tgcagtacct ttcaccaaca aattatgtga caaaatgtct cttgtagtcg cagtcgtttc
    12121 ggataaagaa aagaaagttt ctagtcggga tggaatgcgc ctaactgttg aaacatcacc
    12181 gtttttcgaa aaatgggttt ctgctgctga aacagacttg gaagaaatga aacaagctat
    12241 tttggatgaa gatttcatca aagtgggcga aatcacagaa cgaaacggaa tgaaaatgca
    12301 tgcgacaacg cttggtgccg agcctccatt tacttatttt caaccgaagt cccttgaaat
    12361 aatggatgct gttagagaat tacgagaaaa tggtataccg gcctatttta caatggatgc
    12421 tggtccaaat gttaaagtta tttgtgagcg tgaaaatgaa aatatcgtag cagataagtt
    12481 gtcaggtttg gctaaaaacg ttctaatttg ccacgctggt aaggaagcga gtgttgtatc
    12541 agatgaaaaa taaactacag gttaaaatac ccggaaaatt atatgtagct ggtgaatatg
    12601 cagttgtaga atcaggtcat acggctattc taactgcagt taatcgttat ataacgctaa
    12661 ctcttgaaga tagtgaacgc aatgaattat ggattccaca ttatgaaaat ccagtttcat
    12721 ggccaattgg cggagaactt aaaccagacg gggaacattg gacgtttaca gctgaagcaa
    12781 ttaatatcgc gacaactttc ctgaaatcag aaggaatcga gctaacgcct gtgaaaatgg
    12841 tcattgaaac agaattaatc gaccaatctg gcgcaaaata tggactcggt tccagtgcag
    12901 cggctacagt tgctgtaatc aacgcgctaa tgacgaaatt ttatccagaa atatcaatgc
    12961 ttaaaaaatt caaacttgct gcactttcgc atttagtagt acaaggaaat ggctcttgtg
    13021 gcgacattgc ttcttgtatg tatggcggct ggattgcgta tacaacgttt gatcaagaat
    13081 gggtgaagca tcgtttggct tataaatcac tcgaatggtt tatgaaagag ccgtggccaa
    13141 tgcttcaaat cgaaacattg gaagaaccag tgccgacttt ttctgtcggt tggacgggca
    13201 cacctgtaag taccggaaaa ctagtttcgc aaattcatgc ttttaaacaa gaagatagca
    13261 agaattacca acatttttta actagaaata acgagattat gaagcaaata attcaagctt
    13321 tccatacgaa agatgaggaa ttgctttatt catctattaa agaaaatcgt cgcattcttc
    13381 aagaacttgg aacaaaagct ggcgtaaata ttgaaacaag cttactaaaa gaactagcgg
    13441 actcagctga aaacatgggt ggcgcaggaa aatcatctgg ctctggtggc ggagactgcg
    13501 gaatagcttt ctcgaaaacg aaagaactag ccgaaaaact cgttaatgag tgggaaaagc
    13561 ttggtattaa gcatttacct ttccatacag ggagagttca aattactgaa taatgggga
//
LOCUS       DASDXX010000060        13605 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.060, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000060 DASDXX010000000
VERSION     DASDXX010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13605
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.060"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            178..1422
                     /locus_tag="U0280_001376"
     CDS             178..1422
                     /locus_tag="U0280_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2271327.1"
                     /translation="MKKKMFVVLALVLSLSLVLMACGGSKDDANSGDSKVLNVWAMGD
                     EAKSLKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFV
                     EAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKK
                     VGYNEAPKTWDELSDAALKLSKRGKDMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGQP
                     VFNKKPFVDTVSYLDSFIKNGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDT
                     APDIDGKWATAVLPKKENNESSLGGANLSIFKYSDKKDDALKFMDYMSQPDVQLSWLK
                     DTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQFEEIAQLYGKSWEQIYR
                     GGADVQTQMDTFNDQVEALLKK"
     gene            1483..2376
                     /locus_tag="U0280_001377"
     CDS             1483..2376
                     /locus_tag="U0280_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2271328.1"
                     /translation="MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVG
                     LADYSKINFVGVDNYVNIMQDPVFLKSIFNTLFYVIIGVPLVIVCSLGIALMINFSQA
                     KIFQFFRLIFYTPSITNVVAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAK
                     LSLIILAVWRAIGVNMIIFLAALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIF
                     FVTVTTMIGWLQFFEEPFVMTEGGPLDSTNSVALFIYQNGFQLSKFGYAAAGSFILFI
                     AIIIITIIQFRIQRKNNDGDI"
     gene            2394..3224
                     /locus_tag="U0280_001378"
     CDS             2394..3224
                     /locus_tag="U0280_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2271329.1"
                     /translation="MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEI
                     LKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFGLFLNAMAGYGFAKFK
                     FKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQ
                     FMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIA
                     NDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK
                     "
     gene            complement(3269..4738)
                     /locus_tag="U0280_001379"
     CDS             complement(3269..4738)
                     /locus_tag="U0280_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEM2271330.1"
                     /translation="MGKATGFMEYDRIPSPGRDPKSRTRDWNEYSLPMPVADLTLQAA
                     RCMDCGVPFCSVGMEIKNGVSGCPLHNLIPEWNDAVYRGDWYEALQLLLKTNNFPEFT
                     GRICPAPCEGGCTVAISEPAVGIKSIEKAIIDRGFEEGWIKPAPPKKRTGKRIAVIGS
                     GPAGLACADQLNKAGHSVTVIEKSDRIGGLLMYGIPTMKLEKEQVTRRVNLMAEEGIE
                     FVTGVAAGTDVTFAELREEYDSIVLATGAGNARDIPLAGRDAVGIHFAVPYLSQSTRD
                     NLDNGGVQTLSAKGKNVVIIGGGDTGADCVATALRQGAKSIYQFGIQDKLPELRDGEN
                     PWPQYPRVFKMDYAHEEAEAVYGRDPREYLINTTSFEKDEAGNLIGLHTVEVEENKAE
                     RKYTPVEGSEKYFEVDMVLIAIGFAGTTEDIFTNFGVGKTERHTIDAAKGFYRTSEEG
                     VFACGDARHGQSLVVTAIAEGREAAREVDFYLMGETFLP"
     gene            complement(4753..9345)
                     /gene="gltB"
                     /locus_tag="U0280_001380"
     CDS             complement(4753..9345)
                     /gene="gltB"
                     /locus_tag="U0280_001380"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEM2271331.1"
                     /translation="MKQTNLPKKHGLYNPENEHDACGIGFVANIKKISSHKIVEQGIH
                     MLCQLKHRGGEVGGDTGDGAGILLEISDSFFRRECSKLGINLPEKYHYAVGMFNFPQN
                     KTERECLMAETEKLIASEGQTFLGWRKLPTDVTKVGAGARKTEPAIYQLFIQKNAKLD
                     EAGFERALYLIRKQIEKFAATSKQITETFYVPSLSTRTVIFKGMLLPEQINQYYLDLA
                     DPAYVSAFALVHSRFSTNTFPSWERAHPYRYLIHNGEINTQRGNVNWMKAREKRAESD
                     LLGEDLAKLLPIIDESGSDSATLDNALEFLVQAGRSLPHAAMMLIPEPWDKNPHMTDP
                     KRAFYEYHSTLMEPWDGPTSISFTNGRVIGTILDRNGLRPARYYETKDHTIIYSSETG
                     VVPVDSSEIIRKETVGAGTMLLIDLEEGRIVTDAELKEELTTEKPYREWLEAEMTEIA
                     DLATADLHYEAMDKSERFKKQRAFGYTQDELNKILIPMVTEKKDPMGAMGYDAPLAVL
                     SQRPQVLFNYFKQLFAQVTNPPIDGIREETVTSAMTLLGDEGNILNPTAQNANRIRLK
                     TPILSRKEFAALEQQTKFAQPTVTLPILFKAEERDGLEARLESLFVEADEKIAAGAEL
                     LILSDDGVNADWIGIPSLLAVSGLHHHLVKAGTRTQVSIVVKTAEARDVHQCALLIGY
                     GADAVFPSLAIDTFDGLIKEGRMKGFTLDEAESRYIEAITDGILKIMSKMGISTVQSY
                     RGAQIFEAIGIGDDVIKHYFPGTASQIGGIPLEVIAQEAWLRHREAYHDVGYQSFTLN
                     TGGEYQWRSNGEYHVYNPLAIHSLQQATRENDRETYNLYSDLMQNQNNAFLRGLLTFT
                     SDRKPIPLDEVEPAEAIFKRFKSGAMSYGSISQEAHEALAIAMNRIGGKSNSGEGGEN
                     PNRFTPDENGDWRRSAIKQIASGRFGVTSHYLVNAEELQIKMAQGAKPGEGGHLPGNK
                     VYPWISKTRGSTTGVGLISPPPHHDIYSIEDLSQLIFDLKNANQNARINVKLVSKTGI
                     GTIAAGVAKGNADVILVSGYEGGTGAAARTSIRHAGVPWEIGLAETHQTLLLNGLRNK
                     VVVETDGKLMTGKDVLVAAMLGAEEFGFATAPLVTLGCVMMRVCHLDTCPVGVATQNP
                     ELRKKFSGSADYVVNFFHFIVAEMREMMAELGFRSLTEIIGHKEFLTTHEKKEAHWKA
                     KYIDFSNMLYSDDFYKNQVQYCTKQQDHKIDQTLDMRELVPLIQPALENGEKVTGTFA
                     VRNVDRAIGTVAGSFISKKYGAEGLPEDTISLDFVGSAGQSFGAYTPLGMTLRIHGDA
                     NDYFGKGLSGGKLIVSPDAKTPIKPHDSAIVGNVTLYGATGGYAYVHGKAGARFAVRN
                     SGATAVVEGIGDNGCEYMTGGAVVVLGEIGENFAAGMSGGVAYLYTNNKQATTAKINH
                     ELVNSRSTLNTSELTKLKQLIEQHANLTGSNFAKDILQNWEAEKANFIFVIPNEYEMM
                     LTRITTLEQTGKTHDEAELQAFYEHKDGKLVAGVAK"
     gene            9538..10425
                     /locus_tag="U0280_001381"
     CDS             9538..10425
                     /locus_tag="U0280_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2271332.1"
                     /translation="MELRQLKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELG
                     VHLFDRVGRNMQLTSVGQDFLKQAAIALNELQKAEALVTEYTDPAKGTVRVGLPNSLS
                     TKVLPSVISTFREKYPQITYQFMEGTNEELTEMLLSGVLDMTFLSPVPESSEQIEAIR
                     FFDEKLKLIVPKTHPLAENFTVSLKELASEKFVLYPEDFDLYKIVTKAANKKGFEPQI
                     AFQSRDFYTIQGLVGAGLGISILPEMILDGAIFKETKSIALRDKELRRSVGIITTKKR
                     NLSPSENLFRSFIISFFSN"
     gene            complement(10422..10940)
                     /locus_tag="U0280_001382"
     CDS             complement(10422..10940)
                     /locus_tag="U0280_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM2271333.1"
                     /translation="MIIRKEQPQDYEAIRRVNEEAFKGTVEADLIESIRTSDYYQPGL
                     SLVAEAEDGLIVGYIMFSEISLEAAGRSRFILALAPLAVLPAYQGTRVGSRLMEEGIR
                     LSREKAYPAIAVLGHADYYPRFGFIPSEQFAIPAPFDVPAEYFMLLELYDGSLENLAG
                     TIHYPAAFSENN"
     gene            complement(10943..12049)
                     /locus_tag="U0280_001383"
     CDS             complement(10943..12049)
                     /locus_tag="U0280_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase family
                     protein"
                     /protein_id="HEM2271334.1"
                     /translation="MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNA
                     SWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVAIMETNKMDAIIAVGGGKIADVC
                     KATAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMIL
                     DSPKELLVAGIGDTLAKWYEADVIINSLPTKSVEIEIAHFAAKMCRDNLLQYSEEALA
                     AMDKQVLNEAFVKIIETNILVGGMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGN
                     KVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLAEETLVAVSKRATEP
                     HETIHMMPGEMTADVVLNAMKQLEDSMAMKRVAK"
     gene            complement(12141..12956)
                     /locus_tag="U0280_001384"
     CDS             complement(12141..12956)
                     /locus_tag="U0280_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2271335.1"
                     /translation="MKKGLLITVMLMVMLALGACSSGESKEDQWSRIKKDKEVVIGLD
                     DSFVPMGFRDKDDNLVGFDIDLAKAVFAEYGIKAKFTPIDWTMKESELKNGSIDLIWN
                     GYTVTDARKKQVAFSQPYMKNEQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAK
                     KTEVLTDIINNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDYNII
                     TGGFDATDFAVGMRKSDKELQTKINEAFEKLYKEGKMQEISKKWFGDDEIAKQ"
     gene            complement(12958..13605)
                     /locus_tag="U0280_001385"
     CDS             complement(12958..13605)
                     /locus_tag="U0280_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2271336.1"
                     /translation="MLEIKNLSKKFDQKTILDNVNISLQDGEILSIVGPSGGGKTTLL
                     RCISGLEKMDTGEIFIDEEKIDPMSRKDVENTIGVVFQEFHLFPHLSVLDNLILAPTL
                     ARKTKKADAVKEAERLLGLLDLADKANSMPYQLSGGQKQRVAIARALAMNPKVLLFDE
                     PTSALDPDLRDHVAALILSLKKVGITQIIVTHDHTFAEKVADQMMEVEPLKKEAI"
BASE COUNT         3830 a         3023 c         2414 g         4338 t
ORIGIN      
        1 ataatatact ataataacct tgtcgaaacg tttctatgaa atattgtgta tgtgaattaa
       61 ttttcacaat ttgcttcatc ccgtacggcg cactagttcc gtgcaacagt ttttattctt
      121 taacagcttt tagttaatca agttgctttg aaaaaaacaa aaaatggagg aaaaatcatg
      181 aagaaaaaga tgtttgtcgt tttagcttta gtgttgtcgc ttagtttagt gttaatggcg
      241 tgtggtgggt caaaggatga tgcaaattcc ggcgattcta aagtattaaa tgtttgggca
      301 atgggtgatg aagccaagtc actaaaagaa ctcgcacaaa aattcacgaa agatactggc
      361 attgaagtta aagttcaagt tattccttgg gcaaatgcac atgataaatt acttacagcc
      421 gttgcttcta aatctggccc cgatgtagtc caaatgggaa ctacttggat gcctgaattt
      481 gtcgaagctg gcgcactact tgatattaca aaagatgtcg aaaaaagtaa aaatatgaat
      541 tctgatctat ttttcccagg ttcagtaaaa actactcaat ttgacgggaa aacttacggt
      601 gttccgtggt atgcagaaac tcgcgtatta ttctaccgta ccgatttact gaaaaaagtt
      661 ggttataatg aagctccaaa aacatgggat gaactatccg acgctgcact taaactttct
      721 aaacgtggca aagatatgta cggctttgcc attgatccaa acgaacaaac gactggtttc
      781 attttcggac gtcaaaacgg ctcccctctt ttcgataaag atggtcaacc agtattcaat
      841 aaaaaacctt tcgtagacac tgttagttat ttagatagtt tcattaaaaa tggttccgct
      901 ccagatactg atcttggttt agatgcttct caaagcttcg gcggcgacgg tattgtgcca
      961 atgttcatga gtggtccttg gatggttaat acactgaaag acactgcccc tgacattgac
     1021 ggaaaatggg ctactgcagt attacctaaa aaagaaaata acgaatcaag ccttggtggc
     1081 gctaaccttt ccattttcaa atatagtgat aagaaagatg atgctctaaa attcatggac
     1141 tacatgagtc aacctgatgt gcaattatct tggttaaaag atacaaactc catgccagct
     1201 cgtatggatg cttgggaaga tgatatgctg aaaaatgacc cttactacaa agtattcggc
     1261 gaacaaatga aaacagctga accaatgcca cttatcccac aatttgagga aatcgctcaa
     1321 ttatatggaa aatcttggga acaaatttat cgtggtggtg cagatgtaca aacacaaatg
     1381 gatactttca acgatcaagt agaagcactt cttaaaaaat aacgaataaa aagggcaaat
     1441 gatttattct gccatttgcc cttttagaat ggactggatg ttatgaaaca atttttaaat
     1501 aaaaatacac cctatttgtt tatatcgcca gcactgtttt tacttcttct gttttcccta
     1561 cttccgattt tgcttgcttt tgtcattagt tttacggaca ttgatttagt cgggcttgcc
     1621 gattactcta aaattaactt tgttggtgtg gacaattacg tcaatattat gcaagacccg
     1681 gtatttttaa aatctatttt taacacgctt ttctatgtaa ttattggcgt tccacttgtt
     1741 atcgtctgct cgcttggtat tgcgctgatg attaacttct cacaagcgaa gattttccaa
     1801 tttttccgct taatcttcta cactccttca attacaaacg ttgttgctgt agctgtcgtt
     1861 tggagttact tatataatcc gcgctttggt ttacttaact atttgctctc gtttttagac
     1921 ttaggaccag ttccatggtt acaagaccct actattgcga aattatcact gattatccta
     1981 gctgtttggc gggcaatcgg tgtaaatatg attattttct tagccgcact acaaggcatt
     2041 ccacgtgaat attatgaagc agcctccctt gacggcgcaa atagccgcca acaattattt
     2101 aaaattacgg ttccaatgct tcgtttcgcc attttctttg taacagttac aacgatgatt
     2161 ggttggttgc aattcttcga ggagccgttc gttatgacag aaggtggacc acttgatagt
     2221 acgaactctg tcgccctctt tatctatcaa aacggtttcc aattaagtaa atttggttat
     2281 gccgctgctg gatcgttcat cttgtttatc gcgattatta ttatcacgat tattcaattc
     2341 cggattcagc gcaaaaataa tgatggggat atttaagaga ggagtgttta taaatgaatc
     2401 aatatagaca aaaatcgcgc ggcgctcaaa ttgccgtaat tacaatttta acggttggcg
     2461 gattctttat gattttaccg ttcatttgga tggttctctc ctctttgaaa acggatgctg
     2521 aaattttaaa aatcccacct actatttggc cagaaacttt cacactagat aatttcacca
     2581 aactatttac tgaaatggac tttgctattt acttaaaaaa tacgttaatc attgtgttct
     2641 tctcgttttt cggtttattt ttaaatgcga tggcgggtta cggctttgct aaatttaaat
     2701 ttaaagggaa aaacaagtta ttttatcttg ttcttgctac aatgatgatt ccaggacaag
     2761 taacaatgat tccggtttac ttgctgctta atgcggctgg attaacgaat acgatgacag
     2821 ggattgtgct tccaggactt gttggggcat tcggaatttt cttattccgt caatttatgt
     2881 ccaccatatc cgatgattta ctcgaagcag caagacttga tggcgctagt gaattttata
     2941 ttttctggcg gatagttatc cctatttccc gccctgtgct tgcggtacaa ggtattctta
     3001 ctttcatcgc tggttggaac tcgttcttat ggccgttaat cattgccaac gacgaaaaat
     3061 tctacaccct atcagttggc cttcaattat taaaaggtca atatggcagc aactacgcct
     3121 tacaaatggc cggagcaacc ttcatggtta ttccaattat cttgattttc atgacattcc
     3181 aaaagtacat tttaaaaggc ttcaacgttt ctggaatgaa ataattagtc aaaaaagagc
     3241 ttacccattt aggataagct cttttttatt atggtaaaaa tgtttcaccc atcaagtaaa
     3301 agtctacttc acgagctgct tctcgtcctt ctgcaatcgc ggttacaact aaactttgac
     3361 cgtgacgcgc atctccgcaa gcgaatacgc cctcttcgct tgtgcggtaa aatcctttag
     3421 cagcatctat cgtatggcgc tctgtttttc ctacaccaaa gtttgtaaaa atatcttcgg
     3481 ttgttcctgc aaaaccaatc gcaattagaa ccatatctac ttcaaagtat ttttcgctac
     3541 cttctacagg tgtatatttt ctttctgcct tattttcttc tacttctaca gtatgcagtc
     3601 caataagatt tcctgcttca tctttttcaa aagaagttgt attaataagg tactcacgtg
     3661 gatctcttcc atacactgct tccgcttctt cgtgcgcata atccattttg aaaacacgtg
     3721 gatattgcgg ccaagggttt tcgccatcac gcaattcggg tagtttatct tgaataccga
     3781 attgataaat actttttgcc ccttgtctga gcgcagttgc cacacagtca gcacctgtat
     3841 ctccaccacc gataatcacc acatttttac ctttagcaga aagtgtttgt accccgccgt
     3901 tatccagatt atcacgcgta ctttgcgata aatacggaac agcgaagtga atcccaactg
     3961 catcacgtcc agcaagtggg atatcgcgcg cattccctgc tcctgtcgca agaacgatag
     4021 aatcatactc ttctcgtagt tctgcaaaag taacatctgt ccctgctgca acacctgtga
     4081 cgaattcgat tccttcttcc gccatcaagt tcactcggcg cgttacttgt tctttctcca
     4141 gtttcatcgt tggaataccg tacattaata agccaccaat gcgatcactt ttttcaatga
     4201 ccgttacgct atggccagct ttatttaatt gatcggcgca ggcaagtcca gccggtcctg
     4261 acccaatcac agcaattcgt ttaccggtac gttttttagg aggagccggt ttaatccagc
     4321 cttcttcaaa acctcggtca ataatcgctt tttcgatgga tttaatccct acagcaggtt
     4381 ccgaaattgc caccgtacag ccaccttcac acggtgccgg acaaatacga ccagtaaact
     4441 ctggaaaatt atttgttttt aagagtagtt gtaaggcttc ataccagtca ccccgataaa
     4501 cggcatcgtt ccactcggga attaaattat gcagcggaca gcctgaaaca ccatttttaa
     4561 tttccattcc tacactacaa aacggtacgc cacaatccat gcaacgagcg gcttgtaatg
     4621 ttaaatctgc taccggcatt ggtaaactat attcgttcca gtcacgtgtc cggcttttcg
     4681 gatcacgtcc tggagaggga attcggtcat attccataaa tccagttgct tttcccatgg
     4741 tttcactcct ctctatttcg ccactccggc aactaatttt ccgtctttat gttcataaaa
     4801 agcttgtaat tcagcttcat catgtgtttt tccagtttgt tcaagcgtcg tgattctcgt
     4861 cagcatcatt tcatattcat ttggaatgac gaaaataaaa ttcgctttct ctgcttccca
     4921 attttgcaga atatctttag caaaattgct tcctgtaagg tttgcgtgtt gttcaatcag
     4981 ctgttttaat ttagttaatt cggaagtatt taaagtagaa cggctgttta cgagttcatg
     5041 attgattttg gctgtcgtcg cttgtttatt gtttgtataa agataagcaa ctccaccaga
     5101 cattccagcc gcaaagttct caccaatttc accgagaaca actactgcac cgcctgtcat
     5161 atattcacaa ccattgtcac cgatgccttc cacaacagct gtcgcaccac tattccgaac
     5221 agcgaaacgt gcacctgctt ttccgtgcac ataggcataa ccaccagttg caccgtaaag
     5281 cgttacattc ccgacaatcg cggaatcatg cggtttaata ggtgttttag catctggact
     5341 aacaatcaat ttgccaccag aaagtccttt tccgaagtaa tcattggcgt caccgtgaat
     5401 tcggagcgtc atgccaagag gcgtataagc accgaagctt tgtccagctg aaccaacaaa
     5461 atcaagtgaa atggtatctt ccggcaatcc ctctgcacca tattttttgc taataaagga
     5521 gccagcaacc gttccaatcg cgcggtcaac atttcgtaca gcgaaagttc cagttacttt
     5581 ttcaccgttt tctagtgccg gctgaattaa tggcacaagt tcgcgcatat caagcgtttg
     5641 gtcgattttg tggtcttgtt gttttgtgca atattggact tggtttttat aaaaatcatc
     5701 actataaagc atattcgaaa agtcgatata ttttgctttc caatgtgctt cttttttctc
     5761 gtgagtagtt aaaaattctt tatgtccaat gatttctgtt aaacttctaa agccaagttc
     5821 cgccatcatt tcgcgcattt cagcaacgat aaaatggaag aagttcacga cataatctgc
     5881 cgaaccactg aattttttcc gcagctcagg attttgtgtt gctacaccta ctggacatgt
     5941 atccaagtga caaacacgca tcatgacgca accaagtgtt acgagtggtg ccgttgcaaa
     6001 accaaattct tccgcgccga gcatagcggc aaccagaacg tcttttcctg tcattagttt
     6061 gccatctgtt tcgacaacga ctttgtttct aagtccattt agcaagagcg tttggtgtgt
     6121 ttcagctaag ccgatttccc acggcactcc cgcgtgacgg atacttgttc ttgccgccgc
     6181 accagttccg ccttcataac cgcttactaa aataacgtcg gcattcccct tcgctacgcc
     6241 agcagcaatc gtaccaatac cagttttcga aactagtttc acattgatac gtgcattttg
     6301 atttgcattt tttaaatcga aaatcaattg agacaaatct tcaatcgagt aaatatcatg
     6361 atgtggcggt ggtgaaatca atcctacacc agttgttgaa ccacgcgttt tcgaaatcca
     6421 tggatagact ttatttccag gcaagtgtcc accttcacca ggtttcgctc cttgagccat
     6481 cttgatttgc agttcctctg cattgaccaa gtaatggctt gttacaccaa aacgaccaga
     6541 tgcaatttgt ttgatagcac ttctacgcca atcgccattt tcgtccgggg taaatcggtt
     6601 cgggttttcg ccgccttccc cactattact tttcccgccg atacggttca ttgcgatagc
     6661 aagcgcttca tgagcttctt gactaatcga accataagac atcgcgccag acttaaatcg
     6721 tttaaaaatg gcttcggccg gctctacttc gtccagtgga atcggcttgc gatcacttgt
     6781 aaaagtgagt aatcctctta aaaaggcatt attttgattt tgcattaaat ctgaataaag
     6841 attatacgtt tcacggtcat tttctcgagt agcttgttgc aaagaatgaa tcgctagtgg
     6901 attgtagaca tgatattctc cgtttgagcg ccactgatat tccccgcctg tattaagcgt
     6961 gaaactctgg tagccgacat catgataggc ttcgcgatga cggagccaag cttcttgcgc
     7021 gataacttcc agtggaatcc cgccaatttg cgaggctgtt cccgggaaat aatgtttaat
     7081 tacatcatca ccaataccga ttgcttcaaa aatctgggca ccacggtaac tttgcactgt
     7141 agatatcccc attttggaca tgatttttag aattccatct gtaattgctt caatataacg
     7201 actttccgcc tcatcaagtg taaatccttt catccgtcct tctttaatca agccgtcaaa
     7261 cgtatcgata gcaagacttg gaaataccgc gtctgccccg taaccaatta agagcgcaca
     7321 ttgatggaca tctctcgctt ccgctgtttt cacaacaata ctcacttgtg tacgcgtccc
     7381 agctttaact aaatgatgat gtaatccact gacagctaag agagaaggaa tgccaatcca
     7441 atccgcattt accccatcat ctgataaaat gagcaattct gccccagctg cgattttttc
     7501 atctgcttct acaaataatg attctaagcg agcttctaaa ccatctcttt cctctgcctt
     7561 aaataaaatt ggtaaagtga cagtcggttg ggcaaatttt gtttgttgct caagtgccgc
     7621 aaattctttt cgagataaaa ttggtgtttt caagcgaatc cggttagcat tttgagcagt
     7681 tggatttaga atattacctt catcaccaag taacgtcatc gcagaagtta ccgtttcttc
     7741 gcgaatccca tcaatcggag ggttggttac ttgcgcaaaa agttgtttaa agtaattaaa
     7801 taacacttgt ggtcgttggc ttaaaacagc aagtggtgcg tcataaccca ttgcgcccat
     7861 tggatctttt ttctctgtta ccatcggaat caaaatttta tttaactcat cttgagtgta
     7921 accaaatgcg cgttgttttt taaaacgttc tgatttatcc attgcttcat aatgtaaatc
     7981 ggctgttgct aaatcggcaa tttctgtcat ttctgcttcc aaccattcac ggtacggttt
     8041 ttccgttgtt agttcttctt ttaattcagc atccgtcaca attcgtcctt cttctaaatc
     8101 aattaacaac atcgttcccg cgccaaccgt ttctttgcga ataatttcac tcgaatccac
     8161 tggcacaacg cccgtttccg aagaataaat aatcgtatgg tctttcgttt cataataacg
     8221 cgccggacgt aagccatttc tatccaaaat cgtcccaata actcgaccat tcgtaaagga
     8281 aatggatgtc ggcccatccc acggctccat taatgtacta tgatattcgt aaaaagcacg
     8341 tttcggatcc gtcatatgcg gatttttatc ccatggttct ggaataagca tcattgccgc
     8401 atgaggtaac gaacggcctg cctgcactaa aaattctaag gcattatcca aagtagccga
     8461 atcactacca ctttcgtcaa taattggtag caatttggct aaatcttctc caagtaaatc
     8521 agattctgct cttttttccc gagctttcat ccagttgaca ttaccacgtt gcgtattaat
     8581 ttcaccgtta tgaattaaat atcgatacgg atgcgcccgc tcccaactag gaaaagtatt
     8641 cgtcgaaaaa cgagaatgca ctagcgcaaa agccgataca tatgctggat ctgctaaatc
     8701 taaatagtat tgattaattt gttctggtag taacattcct ttaaaaataa ccgttcttgt
     8761 ggataaactt ggaacgtaga aagtctctgt aatttgctta gaagtcgcag caaatttttc
     8821 gatttgcttt ctaattaaat aaagtgctcg ttcaaaccca gcttcgtcta acttggcatt
     8881 tttttgaatg aatagctgat aaatcgctgg ttctgttttt cttgcaccgg cacccacctt
     8941 tgttacatca gttggtaatt tgcgccaacc aaggaacgtt tgaccttcac tcgcaatcag
     9001 tttttccgtt tcggccatta aacattcgcg ttctgtttta ttttgaggga aattaaacat
     9061 cccaaccgca taatgatatt tttcaggcaa attaatacct agtttgctac actcgcgtcg
     9121 gaagaaagag tctgaaatct caagtaaaat accagcgcca tcacccgtat ccccaccaac
     9181 ttctccaccg cggtgcttta attgacaaag catatgaata ccttgttcga caattttatg
     9241 agaagaaatc tttttaatat ttgctacgaa gccaattcca caagcatcgt gctcattttc
     9301 tgggttgtat aggccgtgtt tttttggtaa attagtttgt ttcatcctag ttcctcctct
     9361 tcaaaaaccg aatccttcta agtctttctg gtaattattt aaattaactg ataattaacc
     9421 agcgattcag cttaccttac atttcttgta gtatctattt tattcctttt catttatcga
     9481 aacaatatat ataatagaat aaaacaatct catttcgaga acaattggag gtaagaaatg
     9541 gaactgcgac aattaaagta ttttatggaa gtagcccgtg tcgagcatat gaccaaagct
     9601 agtgagaatt tacacgtagc ccaatctgcc gttagtagac agataacgaa actcgaagaa
     9661 gaactcggcg tacatttatt tgaccgtgtt ggaagaaata tgcaactcac cagcgttggt
     9721 caagatttct taaaacaagc agcaatcgcc ttaaacgagc tacaaaaagc cgaagcactc
     9781 gtgaccgaat ataccgatcc cgcaaaagga actgttcgcg tcggcttacc gaactccctg
     9841 tctaccaaag tgttgccatc cgttatttcg acctttcggg aaaaatatcc gcaaattacc
     9901 taccagttta tggaaggcac caatgaagaa cttaccgaga tgctcttaag tggcgtcctt
     9961 gatatgactt ttttatcgcc cgtcccagaa tctagcgaac aaattgaagc cattcgtttt
    10021 tttgatgaaa aattgaagct aattgtccct aaaacccatc cacttgctga aaacttcacc
    10081 gtttcactaa aagagctcgc ttccgaaaag ttcgtccttt atccagaaga ctttgattta
    10141 tataaaatcg taacaaaagc tgccaataaa aaaggattcg agccacaaat agcatttcaa
    10201 agtagagatt tttatacaat tcaaggactt gtcggagcag gtcttggtat tagcattttg
    10261 ccagaaatga ttttagatgg agcgattttt aaggaaacga aaagtatcgc tttgcgtgat
    10321 aaagaattgc ggcgttcggt cgggattatt acgacaaaaa aacggaacct atccccttcc
    10381 gagaatttgt tccgttcgtt tattatttcg ttcttttcga attaattatt ttcagaaaat
    10441 gcagctggat aatggatagt tccagctaaa ttttctaaac taccatcata taattctaat
    10501 aacataaagt attcagcagg cacatcaaat ggcgcaggaa tagcaaactg ctcagaagga
    10561 ataaagccaa atcgcggata ataatcagca tgtccaagca cagcaatggc cggatatgct
    10621 ttttcgcgtg ataaacggat tccttcttcc attaatctcg agccaactcg cgtcccttga
    10681 tacgcaggta aaacagcaag tggcgcaagt gctaaaataa atctgcttcg tccggctgct
    10741 tcaagcgaaa tctcactaaa cataatgtac ccaacaataa gtccatcctc cgcttctgcg
    10801 acaagggata aacctggttg ataataatcg gatgtccgga tactttcaat caagtctgct
    10861 tccacagtac ccttaaaagc ttcctcattc acacgacgaa tggcctcgta atcttgtggt
    10921 tgttctttcc gaataatcat ttttacttag ccactcgttt cattgccata ctatcttcta
    10981 actgtttcat cgcatttaat actacatcag ctgtcatttc accgggcatc atatggattg
    11041 tttcatgtgg ctccgttgca cgtttagata cggccacaag cgtttcttcc gcaagtgtcg
    11101 caagtcccat atcatataaa ctcatcggaa gaccaagctc agaataaaat ggcaacaaac
    11161 gctcgatttc atcccatcta ttttctatta ctaattgaac taaaatacca taagctactt
    11221 tattaccatg caataagtga tgtgtttctg gaaccatcgt tagcgcgtca tgaatcgaat
    11281 gcgctcctgc acaacgtcca taatcatcgc caaaaccacc gaccattcca ccaactaaaa
    11341 tattcgtctc aataatttta acaaacgctt cattcaatac ttgtttgtcc atggcagcaa
    11401 gtgcttcttc gctatattgc aacaagttat cacggcacat tttggcagca aaatgcgcga
    11461 tttcaatttc gactgattta gttggtaagg aattaataat cacgtctgct tcgtaccatt
    11521 tggctaacgt atcgccaatt ccagcaacta gtaactcttt cggtgagtct aaaatcattt
    11581 ccggatcaat taataacagc gcattactac tcgcaaacac atcgtaacga atcatagcgc
    11641 cctcttcgtc gtacatcaca ctaagtggtg tataagcggc acaagttgat gcaagtgtcg
    11701 gtaagataat gactggtaaa cgtagaactg ctgctgtcgc tttacatacg tcagctattt
    11761 ttccgccacc tactgcgata atcgcatcca tcttatttgt ttccatgatt gccaccagac
    11821 gatcgcgctc ctcgtaggta gaaccaccat tatatacttc aaaagtagat gtaacagttg
    11881 ataaaacagg gaatttcttt ttagcgactt cccaagaagc atttccacga actactaata
    11941 catttttcaa accgcggcgt tctaggtgag taggtaatgt atcccacgcg cctacttggc
    12001 ataaatattc ttgcggagct ccgcgaacaa tcaattcttt attcaacaaa aatcatccct
    12061 tctgtctggc acggtcggat attcggctgc gacatttata attcaaattg tataggaact
    12121 taaacctact gtcaatcgca ctattgctta gcgatttcgt catcaccgaa ccatttttta
    12181 ctaatttctt gcatttttcc ttctttgtat aatttttcaa aagcttcatt gatttttgtt
    12241 tgcagttctt tatcactttt gcgcattcct acagcaaaat ctgtggcatc aaaaccgcct
    12301 gttataatgt tgtaatcgtc tttatttttt tgtttatcaa tgtaataacg cgcgtacact
    12361 tcatcaatga ttaaaccatc gattcgtttg ttattcaaat caataaaagc tgtatcaaac
    12421 gtatcgtata attctggttc gttattattt ataatgtctg ttagcacttc tgtttttttc
    12481 gccatgtcat cgatcgaact tgccccattt tgtgctccga gcgttttatt cttcatatcg
    12541 ctaaattgat taatattgct tgattttaaa gtgactaata cttgttcatt tttcatgtaa
    12601 ggctggctaa aagcgacttg ttttttcctc gcatccgtca cagtatatcc attccaaatt
    12661 aaatcaatcg agccgttttt cagttcagat tctttcatcg tccagtcaat cggtgtgaat
    12721 tttgctttaa tgccatattc tgcaaataca gctttcgcca aatcaatatc aaagccaact
    12781 aagttatcgt ctttatcacg aaatcccatc ggtacaaaac tatcatctaa accaattaca
    12841 acttctttat cttttttaat tctactccac tggtcctctt tagattcacc gctggaacaa
    12901 gctcccagcg ctaacattac cattaacatt acagttatta ataatccttt tttcatgtta
    12961 gattgcctcc ttttttaatg gttctacttc catcatttga tccgctactt tttcggcaaa
    13021 agtgtgatca tgtgtaacga taatttgcgt aataccaacc tttttcaaac ttaaaattaa
    13081 tgctgcaaca tgatcgcgca agtcaggatc taaagcggat gtcggttcat caaatagcag
    13141 cactttggga ttcatcgcaa gcgctctggc aatcgcgacc cgttgttttt gtccgcctga
    13201 taattggtac ggcatactat ttgctttatc ggctaaatca agtaagccaa gtaatcgttc
    13261 tgcttcttta acggcatctg ctttctttgt tttccgagca agggtcggtg ctaaaatcaa
    13321 gttatctaaa acacttaaat gcggaaataa gtggaattct tggaaaacaa caccaatcgt
    13381 attttccaca tcttttctcg acattggatc aattttttcc tcgtcaataa aaatttcacc
    13441 tgtatccatt ttttccagtc cactaataca gcgcagtaaa gttgttttcc caccacctga
    13501 tggaccaaca attgagagaa tttcaccatc ttgaagagaa atattcacat tatctaaaat
    13561 tgttttttga tcaaattttt tcgatagatt cttaatttct aacat
//
LOCUS       DASDXX010000061        13535 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.061, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000061 DASDXX010000000
VERSION     DASDXX010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13535
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.061"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1443
                     /locus_tag="U0280_001386"
     CDS             <1..1443
                     /locus_tag="U0280_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2271337.1"
                     /translation="VAKIPSLTNLSIAGDNLTNDSLPDLNNLSNITNLNLSPGKLDNN
                     ALTKFNKMSKLSYLNLDSNPSITNIMPLKSIPNLATLFVQFCGINDFRGIDTFPKLVS
                     LSAYGQNVGRTVLINSSIKSSALNFDEANQTIFVPFTLMTERGVNFDGYLFPFTTNTS
                     SASTYFTLNETKIDGSRLTIDDKGITVSGITKSYFDTITKMEYNALYNNPAGSYQTPP
                     NFNNYSVSGGSYDHYFDIDHTLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVT
                     SDFNTVVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDSTK
                     TDQQFLQDISAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIVLVNV
                     VEGNEPPTPPAPGPDPTPGPTPNPNNPNINPNPDNGQSANSENASNPSNSEVNAALPN
                     TGDASQATTVLIGIIIAGVAILFFRQRKHS"
     gene            complement(1486..1785)
                     /locus_tag="U0280_001387"
     CDS             complement(1486..1785)
                     /locus_tag="U0280_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM2271338.1"
                     /translation="MYQSITANDLEQDLKKASHNILDVRDADAFVEGHIPDAINIPIN
                     ELPEKLASLDKEKPYTIICYAGGRSERASQFLAAEGFDVTNVMGGMGAFHGIVTK"
     gene            complement(1902..3719)
                     /locus_tag="U0280_001388"
     CDS             complement(1902..3719)
                     /locus_tag="U0280_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271339.1"
                     /translation="MSGPGPGGGMRMQTTAKPKNFKQTLFRLLGYMKPRSVAIIVVFI
                     FAILSTIFNIFSPKELGKATTEIFKGVMSPAGIDNDKIFNILMIVLVLYLGSSLFSFI
                     QQYVMSSVAQRTVYDMRKDLKAKMARLPLKYYDTRSNGDILSRSVNDMDNIANTLQQS
                     LTQAITAIVQMIGVLIMMLTISWQMTLIVLVTVPISIILVAIIAGRSQRYFGAQQRNL
                     GILNDTVEETYGGQTIIKAFGQEKKTLVKFDEVNEDYFKAAKKAQFISGIMMPVMQFV
                     GNLGYVGVCVAGGIFVTNGTLQVGDIQSFTQYVQLFTQPISSVANIANIIQSTIASAE
                     RVFEMMDEEEEKDEIPANVNQVAGEEHSIVFDHVKFGYTPDKPLMTDLNIHVEEGQMV
                     AIVGPTGAGKTTIINLLMRFYDVDGGQIRMKGIDTRDMTKDAVREKFGMVLQDTWLFN
                     GTIADNIAYGREGATKEEVIGAAKAAYADDFIRRLPNGYDTVLNEEGSNISQGQKQLL
                     TIARAILSDPSILILDEATSSVDTRTELNIQLAMGNLMEGRTSFVIAHRLSTIRDADL
                     ILVMNHGSVIEQGTHQELLDAKGFYADLYNSQFTGAQAV"
     gene            complement(3716..5440)
                     /locus_tag="U0280_001389"
     CDS             complement(3716..5440)
                     /locus_tag="U0280_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271340.1"
                     /translation="MMKLMKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGV
                     VTGDTDYIWSTGMQMLLISFASVILSVIVVYLASRISMGFGKDLRDKIFTKVEDFSLQ
                     EFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFV
                     VVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKF
                     EEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFI
                     QYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSAPPAKLSFE
                     HVTFRYEGAEKPVIEDITFEANAGETVAIIGSTGAGKSTLINMIPRFYDVESGVVKIN
                     GIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWAALRTAQAENF
                     VSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLR
                     EALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGIGTHEELKETNQIYQEIMRS
                     QLSEEEIA"
     gene            complement(5448..5909)
                     /locus_tag="U0280_001390"
     CDS             complement(5448..5909)
                     /locus_tag="U0280_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2271341.1"
                     /translation="MSSKNQDLGHSVIKAFMNFKHAEIKSFQIPGYSKSETRFIFILS
                     RGLKSRGPKIRVSDLGHMLRISKPSVTQMIQSLEGKGLIKRVQNPEDKRSMYVELTEV
                     GAGVSEKMLDEFQASFEDMQEFLGEDDMKKLITLLEKLTDYLNTKSENKEA"
     gene            6075..7415
                     /locus_tag="U0280_001391"
     CDS             6075..7415
                     /locus_tag="U0280_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2271342.1"
                     /translation="MSSVHKVASISLFTLAWPIFLEQFLRLMISYIDVFMLGHYSDDA
                     VAATGVANQILVISIIIYGFISVGVQIIVAQMIGAKKHKEIENVITNGLVVAFLIGIV
                     MSIIFIFMSKNFLTWMGIDPHLVQVGAPFLEIIGGSSVVIAIHASILPILRAHGYVRQ
                     SILVPVTISIINVVGNYLFLYGPLAYLDYGVAGVGISTAVANFVGMGLAIWMLRKYIG
                     YTFHFKKLEQVSKKLLYSILRLGLPSAGENLSYAGSQLVVTAIIAILGTEALTTKVYA
                     STVSQFVALFAIALGQASQIIIGRAVGAKEIDKAYKQGLRSWKIGLVVAIVVSVSIYL
                     FAEPIMSLFTTNTEIIAMTKELFLLSIFLELGRATNIIIISSLNSTGDVRFPFICGLI
                     VMWIVSLPFSYVLGISAGLGLVGVWLAYIIDEGVRAVLMYRRWRSKVWSLKSVI"
     gene            7564..7908
                     /locus_tag="U0280_001392"
     CDS             7564..7908
                     /locus_tag="U0280_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEM2271343.1"
                     /translation="MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVRWALL
                     TQTTFVAGVVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSILIFNLIRGITR
                     IVKHSDDNWARC"
     gene            7961..8347
                     /locus_tag="U0280_001393"
     CDS             7961..8347
                     /locus_tag="U0280_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271344.1"
                     /translation="MRFIIAYLSIFVLGIFSTLLVETILYDNVTPQLVFSAILFAAPV
                     ILVASTLGEIFYGFSKKASYFTFAIWGFAYGVVAAVIILSIIQVSGMLISVGVSILAG
                     VIMALLAIIFFFLRGGKSTSGKAATK"
     gene            complement(8395..8895)
                     /locus_tag="U0280_001394"
     CDS             complement(8395..8895)
                     /locus_tag="U0280_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271345.1"
                     /translation="MNFHIRKATNSDAEAIQHVAITSWHHTYQDLIPGDVQDDFLERF
                     YNVETLHNRISATPFAVVEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTEL
                     LEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH
                     HAFEEE"
     gene            complement(9001..10101)
                     /locus_tag="U0280_001395"
     CDS             complement(9001..10101)
                     /locus_tag="U0280_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 domain-containing protein"
                     /protein_id="HEM2271346.1"
                     /translation="MRKHHLSKKLFFAGLVLFIIGAIGVALTMNKGNMIEKGEPLTKQ
                     WDLSAENINSIAFSSERDVTFEWKESTNGKNYIELKGNYSANDKKAIQKLDPVSEDGT
                     SFNITVPEEEDWYNGFGKIYAYGQQKVTVYLTKDTKLADLEVKSHSGDINVADFKVKK
                     FVSSTNSGELKVSNLEANTAQMATSSGDLELSNMKANSSVETGSGQTDLTNLTGDLEV
                     NGGSGDVNVTGVKAKKLKIAIDSGDIELTSGTVTDLAVLTTSSGDIDASTKGKVQAES
                     NSGAIELAGITNDVTAKTSSGDIDVAFIKQVKNIEINTDSGEVELDLPGDFKAIYEAS
                     SNSGSVKAPTSDSNTDNRVTVKTSSGDIKIEK"
     gene            complement(10094..10684)
                     /locus_tag="U0280_001396"
     CDS             complement(10094..10684)
                     /locus_tag="U0280_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM2271347.1"
                     /translation="MNKQDFLNELNQRLELLDPKERRELLSDYQEHFRNGIEAGKSEE
                     QIVFDLGKPEEIAADIISERGIREEPAEMDYYYVPRKNQNENRSVSKQILIGVGLFFL
                     DICLIIPIMVSLWSLVISLWATVGGFLLSPVILGVGIIFGADFEFYQMFVSIGLVGLG
                     LMLLFVANALTQLTSKVTMAIIQWHKYAVKGGGKNA"
     gene            complement(10677..11009)
                     /locus_tag="U0280_001397"
     CDS             complement(10677..11009)
                     /locus_tag="U0280_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM2271348.1"
                     /translation="MEVNPQFKKGVLELCCLFLIQKKDCYGYELANQVSKYIEVAEGA
                     IYPVLRRLVKEEYCSTYLVESNEGPSRKYYQLTVKGEIYLNELISEWNNFTDSVAKLL
                     TEGDAVNE"
     gene            11203..11751
                     /locus_tag="U0280_001398"
     CDS             11203..11751
                     /locus_tag="U0280_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEM2271349.1"
                     /translation="MRDQKLKFLVVDALFAVIIALLAQVAIPLGPIPLTGQTFAIGLA
                     ATILGARHGTISVLVYIVLGAVGIPVFQGMTAGIGILFGPTGGFIVGFIFNALLTGWL
                     LEKTKFTVPYAIVANILGAIVTLIFGVLWLKVSTGLDWPTAFLTGMVPFIIPGIIKAV
                     FAALLGILIRDRLIKAKLLRAS"
     gene            11827..12528
                     /locus_tag="U0280_001399"
     CDS             11827..12528
                     /locus_tag="U0280_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271350.1"
                     /translation="MSLLNEENSFYNVDLLNLLKDSSEAVLPYKRIRFRRNQQILAEG
                     AETDYFYIIEDGVVSMSKNTCKEDSIINFLGKQECIGPLTLLGGAKSPVNYTTISEVS
                     VYQFERKYVLNKFLSSPDVFWQMNALMQSMVTPMLEREGYVNLPSSEKVLAGLIACGE
                     RFGRIESDGSCLIPYYFTQKILGNYLNLARAYVATNLRKLEEDGIIALSPKPWRVNNF
                     EIHKQKLKENHEPYI"
     gene            complement(12617..13144)
                     /locus_tag="U0280_001400"
     CDS             complement(12617..13144)
                     /locus_tag="U0280_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HEM2271351.1"
                     /translation="MKTFTRILVLLAGIAMIILGVWFLFHPGISLLTSTLMFGFLLLI
                     SGIFHTISYFSDRKSQNVSGWVLADGILSILLGFLLLFNEFDGTLTLVLLFGMWVLFA
                     GIMRTIGAFTAKQNNVQGWGWILTIGIIGIIVGFIALFNPVVSAIGIVLVVAIFFIVQ
                     GIGAIATFFFIGKNS"
     regulatory      13383..13483
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
BASE COUNT         4013 a         2707 c         2363 g         4452 t
ORIGIN      
        1 gtcgcaaaaa tacctagcct aactaatctt agcattgccg gagataactt aacaaatgat
       61 tcattacccg atttgaataa tttatcaaac atcaccaact taaatctaag tcctggtaag
      121 ctcgacaata atgcactaac taaatttaat aaaatgtcca agttaagtta cttaaattta
      181 gacagtaatc cttctattac taacatcatg ccactaaaat ccattccaaa tttagctact
      241 ttatttgtcc agttttgtgg aattaatgat ttccgtggaa ttgatacttt tcctaaatta
      301 gtgagtttat cggcttacgg acaaaacgta ggtagaaccg ttttaatcaa cagctctatc
      361 aaaagctctg cattgaattt tgatgaagca aaccaaacta tctttgtgcc gtttacttta
      421 atgactgaac gaggagtaaa ctttgatggc tatttgttcc cttttacaac taatacaagt
      481 tctgctagca cgtatttcac tttaaatgag accaaaattg acggtagccg tttaaccatt
      541 gacgataaag gaattacggt aagtggaatt accaaaagtt attttgatac gattactaaa
      601 atggaataca atgcattata caataacccc gccggatcgt atcaaactcc gccaaatttc
      661 aataattatt ccgtatcagg gggaagctac gaccactatt ttgacatcga tcatacacta
      721 accattacaa atgattcagc aataagttat ggggaacaaa ccacagttac agaagaacaa
      781 tttttaaaag atgttcatgc tgagacagat gatggaacgc ctgttactag tgattttaat
      841 acggttgtag actttagtaa acccggtgtc tacacggtga cattaaatgc cgaaaatgct
      901 gctggtttaa aagcaacgcc aacacaagta acggtgacca tacttgcaaa accagtcata
      961 acagcagata agagcatttc ttacacgaaa gattcaacca agacagacca gcaattttta
     1021 caagatattt cagcaaaaac aagtgatggt agtaaggtaa cgagtgattt tgatagcgtt
     1081 gttgatttag ccaaagtcgg aacgtataaa gtgactttaa atgcggtaag tgcagatgga
     1141 ctaaatgctg acccagttat tgttttagta aatgtggtag agggaaatga acctccgaca
     1201 ccacctgctc ccggccctga tcccacacca ggtcctacgc caaatcctaa taatccaaat
     1261 atcaatccca acccagataa tggacaatct gcgaactctg aaaacgcatc aaatccgtct
     1321 aactcagaag taaatgccgc tttaccaaac actggcgacg cgagtcaagc aactactgtg
     1381 ttaattggga ttatcattgc cggagtagct atcctcttct tccgtcaaag aaaacatagc
     1441 taaataaaaa agtcgtgact agaattttag tcgcgacttc tttttttatt tagttactat
     1501 accgtgaaag gctcccatac ctcccattac attcgttaca tcaaagcctt ctgcagctaa
     1561 aaattgactc gcgcgctcag aacgacctcc agcataacag ataattgtat aaggtttctc
     1621 tttatcaaga gaagctaatt tttctggtag ttcattaatt ggaatattta ttgcgtccgg
     1681 aatgtgtcct tcaacaaaag catctgcatc tctgacatct aagatattat gtgacgcttt
     1741 ttttaagtct tgttctaaat catttgcagt aatggattga tacatctatt ttcacctctt
     1801 caatttcttc tttattaacc ataacgccta atccaccatc aaacaaattt tttgctcaaa
     1861 aaaagacaat gcggcgggtg agccacattg tcttcttaca tttaaacggc ttgagctcct
     1921 gtgaactgac tgttgtaaag gtcagcgtag aagccttttg cgtccagtag ttcttggtgc
     1981 gtaccttgtt cgattacact accgtgattc atcacgagaa ttaagtctgc atcacgaata
     2041 gttgaaagtc tatgcgcaat cacaaagctt gtgcgccctt ccatcaaatt acccatcgca
     2101 agttgaatgt ttaattctgt acgagtatct acgctagaag tcgcttcatc tagaatcaag
     2161 atagatggat cagataaaat cgcacgggca atcgttagta attgtttttg accttgcgaa
     2221 atgttagaac cttcttcatt caagacggta tcataaccat ttggaagtct gcgaatgaaa
     2281 tcatctgcat aagctgcttt tgctgctccg atgacttcct ctttcgttgc gccttcacga
     2341 ccgtatgcga tattgtcggc aatggttccg ttaaataacc aagtatcttg cagtaccatt
     2401 ccgaattttt cgcggacagc atctttggtc atatcgcgtg tatcaatacc tttcatccgg
     2461 atctgcccac catctacatc ataaaaacgc atcagcaagt tgataatggt tgttttacca
     2521 gcaccagtcg gaccaacaat tgctaccatc tggccttctt ccacatgaat atttaagtca
     2581 gtcattagag gtttatccgg agtgtaaccg aatttcacgt ggtcgaatac aatgctgtgt
     2641 tcttcgccag caacttgatt aacgttagct ggaatttcgt ctttttcttc ttcttcatcc
     2701 atcatttcaa atacacgttc cgccgaagca atagtggatt gaatgatgtt agcaatattt
     2761 gccacacttg aaattggttg cgtaaataat tgaacatatt gcgtaaatga ttgaatatcc
     2821 cccacttgaa gcgttccatt agtaacaaaa ataccaccgg ccacacagac accgacatag
     2881 cctaagttac caacaaattg catcaccggc atcataatcc cggaaataaa ttgcgctttt
     2941 ttcgctgctt tgaaataatc ttcatttact tcatcaaatt ttactaacgt tttcttttct
     3001 tgaccaaagg ctttaataat cgtttggcca ccgtaagttt cctctacagt atcatttaaa
     3061 atacctagat tacgttgttg tgcgccgaag taacgttgtg atctaccagc aataatggcg
     3121 actaaaataa tactgattgg aactgtcact agaacgatta atgtcatttg ccagcttatt
     3181 gttagcatca tgattaaaac accaatcatt tggacaatcg cggtaatagc ttgggttagt
     3241 gattgttgca aagtgtttgc gatattatcc atatcattaa cagaacgact tagaatatca
     3301 ccatttgagc gtgtatcata atatttcagc ggcaagcgag ccattttcgc ctttaaatct
     3361 ttccgcatat cataaacagt tcgttgcgca acactcgaca tgacgtattg ctgaatgaaa
     3421 ctaaataagg aactaccaag gtataagact aaaacaatca ttaatatatt gaaaatctta
     3481 tcgttatcaa tcccagccgg actcataaca cctttaaaaa tttccgttgt tgctttcccg
     3541 agttctttcg ggctaaaaat gttaaaaatc gtggataaaa tcgcaaagat aaacacgacg
     3601 atgattgcga cagaacgagg tttcatatag ccaagaagcc ggaatagtgt ttgtttaaag
     3661 ttctttggtt tggcggtcgt ttgcattctc atgccaccac ctggacctgg accactcatg
     3721 cgatttcctc ctctgacagc tgtgacctca taatttcttg ataaatttga ttcgtttctt
     3781 tcaattcttc atgtgttcca attccagcaa ttttaccttc attcataaca atgatttggt
     3841 cggaattgac aacagaggta atacgttgtg ccacaatgag agtcacggct tcggttgttt
     3901 cagctttcaa agcctcacgc agtttcgcat ccgttttgaa atcgagcgcc gagaaactat
     3961 catcaaaaat ataaatttct ggttttctaa ttaaagaacg tgcgatggaa agacgttgtt
     4021 tttgtcctcc agagaagttg ttcccgcctt gttctacgcg gcttcctaaa ccatttgcaa
     4081 gtttagatac aaagttttcc gcttgagctg ttcgaagtgc tgcccaaatt tcttcgtcgg
     4141 ttgcatcttc ttttccgtag cgcatattag aagcaattgt tcctgtgaat agaaccgctt
     4201 tttgcggcac aagaccaatt ttttggcgca aactggattg atccatttca cgcacgtcaa
     4261 ttccattaat ttttacaaca ccactttcga catcataaaa acgtggaatc atattaatca
     4321 aagtagactt accagcaccg gtacttccga tgattgcaac tgtttcccca gcattagctt
     4381 caaaagtaat atcttcaatt actggttttt cagcgccttc atagcggaaa gtaacatgtt
     4441 caaaagaaag ttttgctggt ggtgcacttg tttttggatt ttcagggtta agtatttctg
     4501 cattcatatc taaaacttca ttaatacgct cagcagaagc tccggcacgt ggaatcataa
     4561 taaatacagc agaaagcatc atgaaggaca tcataatttg catcgcgtat tgaataaacg
     4621 ccatcaagtc ccctacttgc atatcaccat tgccaataaa aatcgaacca atccagacaa
     4681 tcgcaatgga agttaagttc atcagtagca tcattaatgg actcataaga gatagcagtc
     4741 ggttaacttt aatcgccgta gtagcatagt cagcgtttgc ttcttcaaat ttttcgagtt
     4801 catcttcatt gcggttaaag gaacgcacaa cacgaatccc ggttaaccct tcacgaataa
     4861 cgcggtttaa tttgtccatt ttcttttgaa gtgatttaaa catcggcatt gcttttccgc
     4921 caagaataac tactaataga agtagtagcg gtaaaacaac gacaaaaata agcgataatt
     4981 tcgcgtccct gccaactgcc ataataatac cgccgagcaa cataattggc gccatcacca
     5041 ttaatcgcat catcatataa agtacatttt ggatttgaac aacgtcattt gtcgttctag
     5101 taatcaagga agaagttcct actttatcaa attcttgtaa ggaaaagtcc tctacctttg
     5161 taaaaatttt atcgcgtaaa tctttcccga atcccatcga aattctggat gcgagataaa
     5221 cgacgatgac cgacaaaata actgaagcaa atgatataag taacatttgc attccagtgc
     5281 tccaaatgta gtctgtatcg cctgttacaa ctcctttgtc gataatgttc gacataagcg
     5341 tcggtaaata aagctgtcca atgacttgcc cgaaagtaag gactaatacg gccgtaatgc
     5401 tcagccaata aggttttaat cttttcatca atttcatcat ttgcggttta tgcctcctta
     5461 ttttcggatt ttgtgtttaa gtaatctgtc agtttttcta ggagtgtaat caattttttc
     5521 atatcgtctt cgcctaaaaa ctcctgcata tcttcaaaac tagcttgaaa ttcatcgagc
     5581 attttttctg acacgcctgc tccgacctct gttaattcca catacatcga gcgcttatct
     5641 tctgggtttt gaacacgttt aatgagtcct tttccttcca aagattgaat catttgcgtg
     5701 acgcttggtt ttgaaattct aagcatgtga ccaagatcgg aaacacgaat ttttggccct
     5761 ctgcttttaa gcccacgaga taaaataaaa ataaatcttg tttcagattt actgtaaccg
     5821 ggaatttgga aactctttat ttcagcatgc ttaaaattca tgaaagcctt gattactgag
     5881 tgccccaagt cttgattttt cgaagacatt tctccacttc tttccatcat ttgattagtt
     5941 tacctaacta attatatgag atattcgatt tttgtcaagc gatatcttgg agcgattttg
     6001 aaattaatct atacttttaa ctttaattac cttataatgg ctttaattgt gttaatgcga
     6061 agggagggaa ataagtgagt tcagtacata aagtcgccag cataagtctt tttacgcttg
     6121 cttggccgat ttttctagag caatttttac gtctgatgat tagttatatt gatgtcttta
     6181 tgttggggca ttattcagat gatgcggtag ctgcgacagg ggtagcaaat cagattcttg
     6241 ttatttctat tattatttac ggctttatca gtgttggcgt acagattatc gttgcccaaa
     6301 tgattggtgc caaaaaacat aaagaaattg aaaatgtgat tacaaatggc ttagtggtcg
     6361 ctttcttaat tggaattgtg atgagtatta ttttcatttt tatgtcgaaa aacttcctga
     6421 cttggatggg aattgatcct catttagttc aagttggtgc accgttttta gaaattatcg
     6481 gtggaagctc ggttgttatc gctattcatg cttcgatttt gcctattctc cgggcgcatg
     6541 gttacgtaag acaatccatt cttgttcctg tgacgattag cattatcaat gttgtcggta
     6601 attacttatt cctgtacggc ccgcttgcat acttagatta cggggtagca ggtgttggta
     6661 tttccactgc tgtcgcaaac ttcgtcggaa tgggtctagc catctggatg ctgcgaaaat
     6721 atatcggcta tactttccat ttcaaaaaac tggagcaagt ttccaaaaaa ttactttatt
     6781 cgattttacg acttggcctt ccctctgctg gggaaaattt atcgtatgcc ggctcgcaac
     6841 tagttgttac cgcaattatt gcgattcttg gtacagaggc gcttaccaca aaagtttatg
     6901 cttcgacggt tagccagttt gtcgcactct ttgctatcgc gctcggtcag gcctctcaaa
     6961 ttattatcgg tcgcgcggtt ggtgcaaaag aaatcgataa agcttataag caaggtctac
     7021 gtagttggaa gattggtttg gttgtcgcaa ttgtggtcag cgtttcgatt taccttttcg
     7081 cggaaccaat tatgagttta tttactacca ataccgaaat cattgcgatg acgaaagaat
     7141 tgttcttact ttcgattttc ctagaacttg gacgtgcgac gaatattatc attattagca
     7201 gtcttaactc aacaggcgat gttcgttttc catttatatg cggacttatc gttatgtgga
     7261 ttgttagttt gccgttctcc tatgtacttg gtatctctgc tggtcttggg cttgtagggg
     7321 tttggctcgc ctatattatt gatgaaggcg ttcgagctgt tctaatgtac cgaagatggc
     7381 gcagtaaagt ttggtcccta aaatcagtca tataaagaaa cgtctctttg attttttcga
     7441 agaggcgttt ttgtatatga caaaactgtc atcttcctct gtatatcgtc acctaattcg
     7501 atggttccat ttctctttcc ccgctatact agacttataa acaaatgaga ggatagatga
     7561 gaaatgttag ataaaaaaat tattagtgcg cttagttatt tcagtctttt ctttgccccg
     7621 gtcattactc ccgcgattat ctggtgtaca acaaaagata aagaaattcg gcatcatgta
     7681 agatgggcac tcctcacaca gacaactttt gtcgctggtg tagttgtaat gattttactt
     7741 tacaacaatg ttccatttag taccaatagt gcagatacca ttaactttct tgccttagct
     7801 actgtatttt ttatcgtttt tctaaatgta tcgatactca ttttcaactt gattcgggga
     7861 attacacgta tcgtaaagca tagtgacgat aattgggcta gatgttaagc taacttccta
     7921 atttatgcta taatatagtg tactttagga ggtttttttg atgcgtttta ttattgctta
     7981 tttatcgatt tttgttttag gaattttttc tacgctttta gtcgaaacaa tcctctatga
     8041 caacgttacg ccacagcttg tgttttcagc gatacttttt gcagctcctg taattttagt
     8101 tgcttctacg ttaggcgaaa ttttttacgg gtttagcaaa aaagctagtt acttcacatt
     8161 tgctatatgg ggcttcgctt acggggttgt tgcagcagtc atcattttaa gtattatcca
     8221 agtttctggt atgctcattt ctgttggcgt atccattctc gcaggagtta tcatggcgct
     8281 acttgccatc atcttcttct ttttacgcgg tggaaaatct accagtggaa aagccgctac
     8341 gaaataaaaa aatgtctatc ctaattgatt cattcaacta gaatagacat ttttttattc
     8401 ttcttcaaac gcatgatgat tcaaattaaa acgaattgtc tccagcggat aaccgtaaaa
     8461 atcctcggta aattcctcca cttgaacaaa ccctttcgcc ttataaaaat gaatcgctgt
     8521 ttcgtttcct ttttcgacgt taacgaacat tggtaatggc acgtgaaata gagtcattcc
     8581 tacttctaaa agttctgtac caagtccgcg ttgtgtcact tctggtagta aataaaatgc
     8641 tgcgagttcg ctcttcccct tttcaagttc aataaaattc gcaaatccga ttactttgtc
     8701 tgcttgttcc acaacagcaa aaggagtcgc tgaaatacga ttatgaagcg tctcaacgtt
     8761 ataaaacctt tccaaaaaat cgtcttgtac atcgcctgga attaaatctt gataggtatg
     8821 atgccacgaa gtaatcgcta catgctgaat ggcttcagca tccgaattag ttgctttcct
     8881 aatatgaaaa ttcatcatcc attccccttt cacttgcgca aattgatgaa acagtttatc
     8941 tgactttacc cctttttaac aaaaagaatg cgctaattaa ataattagcg cactgatttt
     9001 ttatttttcg attttaatat ctccggaact tgttttcacc gttactcggt tatcggtatt
     9061 tgaatcactc gttggtgctt taacgctacc tgaattacta cttgcttcat aaatagcttt
     9121 aaaatcaccc ggtagatcaa gttcaacttc accagaatct gtattgattt cgatgttttt
     9181 tacttgtttg ataaaagcta catcgatatc acctgagctt gtttttgctg ttacatcatt
     9241 cgttatgcct gcaagttcga ttgctcctga gttggattcc gcttgtactt taccttttgt
     9301 acttgcatca atgtctccgg aacttgttgt taacacagct aggtcagtta cagtgccact
     9361 agtcaactca atgtctcctg aatcgatggc aattttaagt ttcttcgctt taacacctgt
     9421 aacattcaca tcgcctgaac caccatttac ttctaaatca cctgttaaat tagtaaggtc
     9481 cgtctgtcca gaaccagttt caactgagct atttgctttc atattcgata attccaagtc
     9541 cccagaagaa gtagccattt gagcagtatt tgcttccaaa ttacttactt ttaactcacc
     9601 tgagttggta gaactaacaa atttctttac tttaaaatca gctacattga tatccccaga
     9661 atgagatttc acttctagat cagctaattt agtatctttt gttaaataaa cggttacttt
     9721 ttgttgaccg tatgcgtata ttttgccaaa gccgttatac caatcctctt cttcaggaac
     9781 tgtaatatta aaggacgttc catcttccga aactggatct aatttttgaa tggctttttt
     9841 atcattagca gagtaattac cttttagttc gatgtaattt tttccatttg tactttcttt
     9901 ccattcaaac gttacgtcgc gctcggaaga aaaagcaatg gagttaatat tttcagctga
     9961 taagtcccac tgttttgtaa gtggttcacc tttttctatc atattacctt tgttcatcgt
    10021 taatgctaca ccgatagcac cgataataaa tagtaccaaa ccagcgaaaa ataatttttt
    10081 acttaagtga tgtttacgca ttttttccgc ctccctttac cgcatattta tgccactgga
    10141 taatcgccat tgttacttta cttgtaagct gagttagcgc gtttgctaca aataaaagca
    10201 ttagccccaa acctacaagg ccaatagaaa caaacatttg ataaaattcg aaatcagcac
    10261 caaaaataat tcctacgcca agtataactg gtgataaaag gaacccacca accgtcgccc
    10321 aaagtgagat aaccaaggac catagcgaaa ccataattgg aatgataaga caaatatcta
    10381 agaaaaataa tccgacacct attaaaattt gtttactcac agatctattt tcattttgat
    10441 tttttcgcgg gacataataa taatccattt ctgccggttc ttcacgaata ccacgttcgc
    10501 tgattatatc cgcggcaatt tcttctggct tgccaaggtc aaaaacgatt tgctcctcgc
    10561 ttttccctgc ttcaatccca tttctaaaat gctcctgata gtccgatagt aactctctcc
    10621 gttctttcgg atcaagcaat tccagtcgtt ggtttaattc attgagaaaa tcttgtttat
    10681 tcatttactg catccccctc tgttaatagc tttgccacac tgtctgtaaa attattccat
    10741 tcagaaataa gttcattcaa gtaaatttct ccttttactg tcaactgata atattttctt
    10801 gatggacctt catttgattc tactaaatag gtagaacaat attcttcttt tactaatctt
    10861 ctaagtactg gataaatagc accttcagct acttcaatat atttagacac ttgatttgct
    10921 aattcataac cgtaacaatc tttcttttga attaaaaata aacagcaaag ttctaacaca
    10981 ccttttttga actgtgggtt aacctccatg ctaactcctc cattctgtta tattgcacac
    11041 tagtaacaag tattcactac tatatattgt tcactaccac tatagtttaa catacactag
    11101 tgttcattgc aaggtactgg ttagaaaaaa tagtattgtt ttttcaggag ataaatgtta
    11161 acctatttta gtaaaaagtt tacattaagg agagatatgt ttatgcgtga tcagaaattg
    11221 aaatttttag tcgtagatgc tttattcgca gtcatcattg ctttacttgc acaagttgct
    11281 atcccacttg gtccaatccc ccttactggg cagacgtttg ccattgggtt agctgcaacc
    11341 attcttggag ctcgtcatgg tacaatatct gttttagttt acattgttct tggcgctgtg
    11401 ggtattcctg ttttccaagg tatgacagca ggaattggga ttctttttgg gccaactggc
    11461 ggatttattg tcggatttat ttttaatgca ctacttacag gttggttgct cgaaaaaaca
    11521 aaattcactg ttccttatgc aatcgttgct aatattttag gagccatcgt tacgttaatt
    11581 ttcggggttt tatggcttaa agttagcact ggacttgact ggccgaccgc ctttttaaca
    11641 ggcatggtac ctttcattat tccaggcatt atcaaagcgg tttttgcggc gttattaggg
    11701 attctcattc gtgatcgttt gattaaagcc aaattacttc gagcatccta agtcccatta
    11761 atacacattt tgagtcttct cctatataat gataatgatt aacactgaga aaaggggact
    11821 cggtatatgt cattactgaa tgaggaaaat agcttttaca acgtagattt actcaattta
    11881 ttaaaagatt ctagtgaagc agttcttcca tataaaagaa ttcgctttag gcgcaaccaa
    11941 cagattttag ctgaaggtgc ggaaactgat tatttctaca tcattgaaga tggtgtcgtt
    12001 tctatgagta aaaatacttg taaagaagat agcattatta acttcttagg taaacaagaa
    12061 tgtatcgggc cgcttacact tcttggtggt gcaaaatcac cagtaaatta cacaacgata
    12121 agtgaagtga gtgtttatca atttgaacgt aaatatgttc ttaataaatt cttaagttca
    12181 ccagatgttt tttggcagat gaatgcactt atgcaaagta tggttacacc tatgttagaa
    12241 cgggaaggtt acgttaattt accttctagc gagaaagttt tagcgggatt aattgcttgt
    12301 ggggagagat ttggaagaat cgagtcggat ggttcttgtt tgattcccta ttatttcacc
    12361 caaaaaatct tgggaaatta tctaaattta gctcgagctt acgttgcaac taacctgcga
    12421 aagctcgaag aagatggcat tattgcgctt tcgccaaaac cttggcgtgt taataatttc
    12481 gagattcata agcaaaaact aaaagaaaat cacgaacctt acatatgagt gcaaaatgaa
    12541 tacttttttc taattgtatt tcgtaaaaat atgcataata aaaagaagct atcaaactaa
    12601 gatagcttct tttttattaa ctatttttac caataaagaa aaatgttgcg attgcgccga
    12661 taccttgaac gatgaagaaa atcgcaacga caaggacgat accaattgca gagacaactg
    12721 gattgaatag agcgataaaa ccaacaataa tgccgataat accgattgtt aaaatccagc
    12781 cccagccttg tacgttgttt tgtttggcag tgaatgcgcc aattgtacgc ataataccag
    12841 caaataatac ccacataccg aaaagtaata cgagtgttaa agttccgtca aattcattaa
    12901 ataatagcaa gaaacctagt aagatggata aaatcccgtc agctagtacc cagccagaaa
    12961 cattttgtga ttttctgtct gaaaagtaag agattgtgtg gaaaatacca gaaatcagta
    13021 ataagaaacc aaacattaat gtcgaggtta ataatgaaat tcctggatgg aataagaacc
    13081 aaacccctag tataatcatt gcaatccccg ctaataaaac aagaattcgt gtaaaagtct
    13141 tcatttttta tttcaactcc cctttgtttt ttctaattca accccatttt taatgaaata
    13201 taattagtct taactataat agcctaaaaa atggatttaa aaccttttaa aaaaattttt
    13261 tctttcaaaa aaaacgtcgt tgtcacaaat tcaacacaaa aagtactaat tttagacttt
    13321 ttcagcacat agttgacaat tgatggcatc cagcgtaata tataacttaa tttaatagta
    13381 ttttcttatc acgaaaggtg gagggactgg ccctttgaag ccttagcaac cggaatttat
    13441 tttcacggtg ctaattccag cagtatattc tgaaagataa gtcggaaatc caagtttagg
    13501 aaactctatc ctctctggcg gcttatatac tgcta
//
LOCUS       DASDXX010000062        13160 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.062, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000062 DASDXX010000000
VERSION     DASDXX010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13160
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.062"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            193..2667
                     /locus_tag="U0280_001401"
     CDS             193..2667
                     /locus_tag="U0280_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2271352.1"
                     /translation="MKKILHIVIALSVICSIILVPVDWSAKAGGNNKRDDLIKSVSFY
                     NSNGQNVTAKENYNEKLNYFLEVAFGGNSFQKGDYFNITLSSDALLYTEKAYDLKVDI
                     DPTAVTNEQVVGKVTVEKINGSPTLHFVFTEDSESFFINSFDASFKIQVMPAHGDKNV
                     INLSYSGAAKNFKNIGTSSVEWNVNMADDWPPVGISDFSKISGDLYHAILVYEKPSSK
                     VNYETEILVSYPLFEKRIPLGNVQNIKIEVWDEAKEIYRVGVAGVDYGTITYDVGTPF
                     VGGPIFQMNCTIPFKGISTKTRVSFDIDTNVDGKPGTTDPYLVSLSSLSSATKSLEFY
                     PVNNAVTQMTATFFGKVTTRFEDELGNPVTFDNYSTVTTPGKVNQDGKFEIAEPFLHN
                     SVQNVDKHAYDTLLDTNKYKLLEVTSPNKLSETADNLSIQIKRGYQNDVLYKIKALQK
                     PVISALPEIEYSKTVNRTMEEFLEDVEAKTDIPADIDCDLTNVKWGVPGDYLVLITAV
                     NEDNQAADPVPVTIKISKNPAPVITVDPEIIYDKTVTKEESTLLNEVNARTNDGSTIT
                     SNINDKVKWGVPGDYEVTLNAVNEDGVAAESKTFIVRILKSPAPIITVDPEITYPKTI
                     TKTEAELLQEVNAQTNDGSPLVSDMNDKVKWGVPGDYEVTLNAINEDGVAAEAKTFIV
                     RILKSSAPIITVDPEITYDSSVIKDERELLKDVHARSSDGSVLTSDSQVKVKWKKTGS
                     YTVTLNAVNEDGISANSVQFTVHIVDAKAIPVVIEEKPESTPKPDTKEKVVIKKEKLP
                     KTGDTNTKTILSGIFCLGAWYLLRRK"
     gene            2866..3519
                     /locus_tag="U0280_001402"
     CDS             2866..3519
                     /locus_tag="U0280_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271353.1"
                     /translation="MDDWSTLIGELEHNTPEKVWIVREELNISEVFEIQKLEAHFILV
                     LEGVLRMENEHQQILHYFRENNVIYQSPYELRVQNKLRLVAETPAHIVLLHREFFLNY
                     ATNQPAYSEKLVRAIMDNAASFMFELMKNDLKSEDRLAYSLQQLCQSLELEVKNEFYL
                     LPHYINKNKLALYSDISRKSLYKYLQNLERKGQIKMNGNQILVRISRFTNSENVDWL"
     gene            3708..5324
                     /locus_tag="U0280_001403"
     CDS             3708..5324
                     /locus_tag="U0280_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271354.1"
                     /translation="MKLGKVGALLLGTALVFQAPFQVFATSVNGEEQVKKEAAAPKIS
                     VNKQTLAATSDLEQTVGEAITKTIHLQDQALPNNEWGSYISDVKVTLSNMDGISYDVK
                     YGPLSEDGTHYQYADITLSGAPTKAGTGSISLEYYDGAGNGGVYSYSVNTKSKTTIQY
                     VDGDGNKLAEDTVKTGDLNTAYTSEPKTIDGYEVDETKLPSNQNGQFAETNQTVTYIY
                     SKTKSEVNKGTVGISFYTPDGSRRELKSSLDLSYAYPDGVPTDTVTFGDLAKNTTYKD
                     LRNTPDAPTLLWNDLLHYMVDYMNGDIDAAQFEEAVGLTPANFDLDFISRNFEGYKFD
                     EAMYQENLSKLVTFEQDGDQVDLQVPFKKVEVGADITVKYVDTAGNELASVETLSGDV
                     DDNYTSEAKTIDGWTLKETPNNATGVFSKEAQTVTYVYEKNEDTDVTPAPDNSADTND
                     DSNSSDNTATTDDNSSSAVKEKAQTQASSPKAGKVTTQESTSNKVTAQSKESLPKTGD
                     NVLESSLLVGLGMLLLGGLFVFLRKTRKVK"
     gene            complement(5410..5718)
                     /locus_tag="U0280_001404"
     CDS             complement(5410..5718)
                     /locus_tag="U0280_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM2271355.1"
                     /translation="MKVSKSFEAFAKEAPEVHSAWMETVHKLDAASKLDKKTEELAYI
                     AVMAATRLESGLPFHVKMAKTNGATRDEIISAVLVGLPAVGNTVISALPVALEAYDEV
                     "
     gene            complement(5781..6596)
                     /gene="pdxK"
                     /locus_tag="U0280_001405"
     CDS             complement(5781..6596)
                     /gene="pdxK"
                     /locus_tag="U0280_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HEM2271356.1"
                     /translation="MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTM
                     DPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIDIIKATREAIDKYDLK
                     NVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDM
                     KKAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTF
                     AAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR"
     gene            complement(6621..7487)
                     /locus_tag="U0280_001406"
     CDS             complement(6621..7487)
                     /locus_tag="U0280_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2271357.1"
                     /translation="MIKVIASDMDGTLLNSDIEIAQENVEAIEKARAKGIHFVLCTGR
                     MYDDAMGLINKANLYAPAICMNGAEIRDEHGKIILQHPIDRNLARNTYNTLTELGMYT
                     EFFTDMGPITTDKARGKEFMIEMHKRIHPDVPAETIMDKVEERFESKDVHEIPDVERI
                     LGNKDLTILKFISFSSDKDILAKAKQKLEKDSELSVTSSFSDNIEITHREAQKGISLQ
                     YYVEKLGVTLDETFAIGDNMNDISMLKMAGYSVAMGNGEEEVKDLAEHVTLSNDEHGV
                     AAAIYKMLETND"
     gene            7661..8224
                     /locus_tag="U0280_001407"
     CDS             7661..8224
                     /locus_tag="U0280_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HEM2271358.1"
                     /translation="MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMDSESR
                     ASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMA
                     PGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAV
                     VTKSFPDNVVLAGNPARVIKTIEVEEK"
     gene            8221..8484
                     /locus_tag="U0280_001408"
     CDS             8221..8484
                     /locus_tag="U0280_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5327 family protein"
                     /protein_id="HEM2271359.1"
                     /translation="MIIADSKIFEQMENELAKAKAATTKASQDKHLHGLMLLVQLAKT
                     GDETTAAVEPIAIQSAEPAQIASMDGKKIELEDGANGDSLLDF"
     gene            8494..8871
                     /locus_tag="U0280_001409"
     CDS             8494..8871
                     /locus_tag="U0280_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HEM2271360.1"
                     /translation="MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQ
                     MFHAGGILVVGLLMEKQASRLYTWAAILFSVGIVFFSGSLYVLSISKVSILGAITPIG
                     GVCFVVGWFLLILGVSRRTMSRY"
     gene            8985..9920
                     /locus_tag="U0280_001410"
     CDS             8985..9920
                     /locus_tag="U0280_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271361.1"
                     /translation="MTYALEIKGLRKIYSTGVEALRGVDLTVEEGDFYALLGPNGAGK
                     STTIGIITSLVNKTSGQVSVFGYDLDTDIVRAKQQIGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVSRKEAIKRSEKYLKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRREMWTFLRELNESGTTIILTTHYLEEAEMLCRNIGIIQSGELIENT
                     SMKSLLSKLQFETFIFDLEPYEEAFEITGYNHVFEDKQTLSVEVERNQGVNHIFEQLS
                     EHGIKVLSMRNKSNRLEELFLKITEEKHQVGEKHV"
     gene            9913..10683
                     /locus_tag="U0280_001411"
     CDS             9913..10683
                     /locus_tag="U0280_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271362.1"
                     /translation="MFNLYFTALKSLAAKETNRYMRIWVQTLVPPVITTSLYFIIFGK
                     MIGSRIGEMNGFSYMEYIVPGLIMMSVITSSYANVSSSFFSQKFQKNIEEILVAPVPT
                     HIIIWGFLIGGIGRSVLVGALVTLISMVFVPIHIHSWTIGIITFLMTAILFSLAGLIN
                     GIFARSFDDVSIVPTFVLQPLTYLGGVFYAISMLPPIWQAISKVNPIVYMISGFRYGF
                     LGVTDVPVAISLSILVVFSAVLYSICWYLISKGRGLRS"
     gene            10943..11827
                     /locus_tag="U0280_001412"
     CDS             10943..11827
                     /locus_tag="U0280_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2271363.1"
                     /translation="MMNKENPLNKYHTGKFEKQRQDYPGLQSKMTPVPDTGESSYQGA
                     NKLTGKKAFVTGGDSGIGRAAVIAYAREGADVAINYHPDEEVDAQEVKAIVEEAGQKC
                     VLLPGDLRKEGLAKDLVKKAYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVN
                     VFSVVFAIQEALNYLKAGASIILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLG
                     EKGIRINAVAPGPIWTALQISGGQPQDSIPAFGQDQPLGRAGQPAELASAYVLLASDE
                     ASYTTGQVYGITGGAPIN"
     gene            11845..12021
                     /locus_tag="U0280_001413"
     CDS             11845..12021
                     /locus_tag="U0280_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HEM2271364.1"
                     /translation="MPWTKNDYPDSWKNLRKTEREKAIEIGNALLKDGYSESRAIPIA
                     TSKAEEWYKNHKES"
     gene            12146..12754
                     /locus_tag="U0280_001414"
     CDS             12146..12754
                     /locus_tag="U0280_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271365.1"
                     /translation="MNKRRWIFSTVVAAFLLIIGGFLVYQQMTPKPFTEVVAEAKIDG
                     YESGDELENASTVIVTGQLEKRGDSIIERASDDAVIGVYRMSTFKIAQVLKNETDDNL
                     AKEMTISVYENEGYDAKANTTYHIAGYTKMEKEEKYLLLLQKDSEDDYYVPTAVIFGK
                     INLNPNKRNELFPKNSDTESAINKVQAEVLKNLENEIERENK"
BASE COUNT         4281 a         2180 c         2813 g         3886 t
ORIGIN      
        1 ttagtaagaa atattttcta ttaaatgctt tttgacaatt tttagtcaca tttagtctgt
       61 aatcgcttat attaatggac taattgggag ttctaagtag atataatggt ttttagttag
      121 gtgcagagat acgcaagaaa acacaggagg gcttgggaca ggtcaaacca tactacaaag
      181 gaggagatgt aattgaagaa gattttacat attgttatcg cacttagtgt aatttgttcg
      241 ataattttag tgccagtaga ttggtccgca aaagcaggcg gtaataataa gcgagatgat
      301 cttattaaat ctgtcagttt ttataattca aatggacaaa atgtaacggc gaaggaaaac
      361 tataatgaaa aactaaatta ttttttagaa gtagcttttg gagggaattc tttccaaaaa
      421 ggggactatt ttaatattac tttatcatct gatgccttac tctatacaga gaaagcctat
      481 gatttgaaag tggatattga cccaacagcg gtaactaatg aacaagtagt tggtaaagtt
      541 actgtagaaa aaattaatgg atcaccaaca ttgcactttg tttttacaga agattcagag
      601 tcttttttta taaacagctt tgatgcgagt tttaaaatac aggtgatgcc agcgcatggc
      661 gataaaaacg ttattaatct ttcctatagt ggcgctgcaa aaaactttaa aaacattggg
      721 acgagcagtg tggaatggaa cgtaaatatg gcagatgact ggccgccagt tggaattagc
      781 gatttttcta aaataagtgg cgatttatac catgcgattt tagtgtatga aaagccgagt
      841 agtaaagtga attacgaaac agaaattttg gtatcgtatc cgctttttga aaaacgaatt
      901 ccacttggaa atgtgcaaaa tattaaaatt gaagtttggg atgaagcgaa ggagatttat
      961 agagttggtg tagccggggt ggattacgga acgattacat acgatgttgg aactccattt
     1021 gtaggcggtc ctattttcca aatgaattgt actattccgt tcaaagggat ttctactaaa
     1081 actcgtgtta gttttgatat tgatacgaat gtggacggga aacctggaac aacagatccg
     1141 tacttagtta gtctttcttc cttatcatca gctacaaagt cgctggaatt ctatccagtg
     1201 aataatgctg ttacgcaaat gacagctacc ttttttggga aagtaacgac gcgctttgag
     1261 gatgagttag gcaatccagt tacttttgat aattatagta ctgtaacaac accagggaaa
     1321 gtcaatcaag atggtaaatt tgaaatagcg gaaccttttt tacacaattc cgtccaaaac
     1381 gtggataaac acgcctatga tacccttttg gatactaata aatataaatt attagaggta
     1441 acttctccta ataaactatc tgaaacagcg gataatttaa gtattcaaat aaagcgtggt
     1501 tatcagaatg atgttttata caaaataaaa gctctccaaa aacctgtcat tagcgcgctt
     1561 cctgaaatcg aatatagtaa aacagtgaat aggaccatgg aagagttttt ggaagatgtg
     1621 gaagcaaaaa cagatattcc agctgatata gactgtgatt taacgaatgt gaaatggggt
     1681 gttccggggg attacctagt tcttataacc gcggtgaatg aggataatca agcagcggat
     1741 cctgttcctg taacgattaa aatttccaaa aatcccgcac cagtcataac ggtagacccg
     1801 gaaataatct acgataaaac agtgacgaaa gaggagagca cattactaaa tgaagtaaat
     1861 gcgcgaacaa atgacggttc gacgataact tctaacatta acgacaaagt aaaatggggc
     1921 gtgccaggcg attacgaggt tactttgaac gcggtaaatg aagacggcgt ggcagcggaa
     1981 tcgaaaacat ttatcgtccg cattttaaaa agcccagcac caataatcac ggtagatcct
     2041 gaaataacct atccgaaaac aataactaaa acggaagctg aactccttca agaagtaaat
     2101 gcgcaaacaa atgatggttc accgcttgtt tctgatatga atgacaaagt aaaatggggc
     2161 gtgccaggcg attatgaagt tacgttaaac gcgataaatg aagacggcgt agcagcggaa
     2221 gcgaaaacat ttatcgtccg cattttaaaa agttcagcac caataatcac ggtagatcct
     2281 gaaataacct atgattcttc tgtaattaaa gacgaaagag agctattaaa agatgtccat
     2341 gctcgttcaa gtgacggttc ggtattaact tctgatagtc aggtaaaagt aaaatggaaa
     2401 aaaacaggaa gctataccgt tactttaaat gcagtaaatg aagatggcat ttctgctaat
     2461 tctgtgcaat tcactgtgca tatagtagac gctaaagcaa taccagtagt aattgaagaa
     2521 aagcctgaat ccactccaaa accagatact aaagaaaaag tagttattaa gaaagaaaaa
     2581 ctaccaaaaa caggagatac gaatacaaaa actatattga gtgggatttt ttgtttaggc
     2641 gcttggtatt tgcttagaag aaaatagaca aaaaccgcaa gtgaagtcac ttgcggtttt
     2701 tttgccgatt gtagcttaaa actgctagag tagatataaa ttgccaattt gaatcattcg
     2761 cattctaggg cttattttta gaaacgattt tttcatggat aaaagggtat agtaacaaaa
     2821 taggaacgcg gttaggaaaa cataaacttg atggtggtga aacaaatgga cgactggtca
     2881 actttgatag gcgagctaga acataatacc ccagaaaaag tttggattgt tagagaagaa
     2941 ctaaacatat cggaagtatt tgaaatacaa aaattagagg cgcattttat tttagtttta
     3001 gaaggtgtct tgcgtatgga aaatgaacat caacaaattc tgcattattt tagggagaat
     3061 aacgtcatat atcaatctcc atatgaatta agagtacaaa ataaactaag actagttgct
     3121 gaaacacctg ctcacattgt tttactgcac cgtgagtttt tccttaatta tgcaacaaac
     3181 caacctgctt attctgaaaa attagtgcga gcaattatgg ataatgccgc gagttttatg
     3241 tttgagttaa tgaagaatga ccttaaatca gaggaccgat tggcttattc attacaacag
     3301 ctatgccaaa gtttagaatt agaagtgaaa aatgagtttt atctactgcc tcattatatt
     3361 aataagaata aattggcgct ttatagtgat atttcgagga aaagtttata caaatacctt
     3421 caaaatttag aaagaaaagg acaaatcaaa atgaatggta atcaaatact tgtccgcatt
     3481 tcgcgattca caaatagcga gaatgtagat tggttgtaga acaaaaaagc cgtaattact
     3541 ggcaaaatta ataattcgaa aaaacgacac atgattgata gtatggagtg gattttacac
     3601 atatttgtcc tcctcgcctt tgatatactt tacaaatcaa gtgagaccta tacgataatt
     3661 acatcattta gataacttga aattgtaaag ttgaaggggc aaaaaaaatg aaattaggta
     3721 aagtaggagc cttacttctc ggtacggctt tagttttcca ggcaccattc caagttttcg
     3781 caacgagtgt aaatggagaa gaacaggtga aaaaagaagc tgctgcgcca aaaatatccg
     3841 ttaacaagca aaccttagct gctaccagtg atttagaaca aacggtaggg gaagcaatta
     3901 ccaaaacgat acatcttcaa gatcaagcat taccaaacaa tgaatggggt agctatattt
     3961 ctgacgtgaa agtaacatta tccaatatgg acggaattag ttatgacgtg aaatacggac
     4021 cgctaagtga agacggtacg cactatcaat atgcagacat aacactttca ggagcaccga
     4081 caaaagctgg aacaggaagc attagccttg aatattacga cggggcaggt aacggtggag
     4141 tttacagtta ttctgtaaac acaaaatcta aaacaactat ccaatatgta gatggtgatg
     4201 gaaataaatt agcagaggat acagtgaaaa cgggtgattt aaatacagcc tatacctctg
     4261 aaccaaaaac gattgatgga tatgaagtag acgaaacaaa acttcctagc aatcaaaatg
     4321 gtcagtttgc tgaaacaaat cagacagtta cgtacatcta ctcaaaaacg aaaagtgaag
     4381 taaataaagg aacggtcggt atttcattct atactcctga tggtagccgc cgggaactta
     4441 agtcctcatt agacttaagt tatgcctacc cagatggtgt cccaacagac acagtaacat
     4501 tcggcgattt agcaaaaaat acgacttaca aagatttaag aaatacgcct gatgcgccta
     4561 ctcttttatg gaatgatttg ttacattaca tggtagacta catgaacggc gatatagatg
     4621 ccgctcaatt tgaagaggca gttgggctaa caccagcgaa ttttgattta gattttattt
     4681 cacgaaattt cgaaggatat aaatttgatg aagcaatgta tcaagaaaat ctaagtaaat
     4741 tagtcacttt tgagcaagat ggcgatcaag ttgatttgca agtaccattt aagaaagtag
     4801 aagttggagc ggatattact gtaaaatacg ttgacacagc aggaaacgaa ttagcatctg
     4861 tagaaacgtt gagtggtgat gtggatgata actatacttc agaagcaaaa acaattgatg
     4921 gttggacttt aaaggaaaca cctaataatg caacaggagt ctttagtaaa gaggcacaaa
     4981 cggttacgta tgtttatgaa aaaaatgagg atacagatgt cacaccggct cctgacaatt
     5041 cagcagatac aaatgatgac agtaactcat cagataatac tgcgacaaca gatgataata
     5101 gtagtagcgc agtgaaagaa aaggcgcaaa cacaagcaag tagtccaaag gcaggaaaag
     5161 taaccacaca agagagcact tctaacaaag taacagcaca atcaaaagaa tcacttccta
     5221 aaacgggaga taacgtgttg gaaagtagct tgttagtggg cttgggtatg cttttgttag
     5281 ggggattatt tgtattcctt cgtaaaacta gaaaagtaaa ataaaaaaac gcccagtatt
     5341 tgagcgattt cagactgtag acaaagtgag aaatcatttt atctacagtc tgttttttga
     5401 agttatttat taaacttcat catatgcttc taaggcaaca ggtagggcgc ttataacagt
     5461 atttcctaca gccggtagac caacgagaac ggcgctaata atctcatcac gcgtcgcacc
     5521 gtttgtcttt gccattttca catggaaagg gagcccgctt tctaagcgag tggcagccat
     5581 aacagcaatg tatgctagtt cttctgtttt tttatcgagt ttacttgcgg catctagttt
     5641 atgtacggtt tccatccagg cagagtgtac ttcgggagct tctttcgcga acgcttcaaa
     5701 tgatttgctt actttcattg aactcatctc ctaactttta ttataataaa aaaccgccca
     5761 aacagtggac ggttttcgta ttatctattt tctgctttat tataagcgcc atgccaaaca
     5821 ggaccgatga attcgtttag tgcaaatcca cctttgatag ctgcagtgac aaagtctttt
     5881 gcttttgcga ctgcttcttc aaccgttaaa ccttttgcaa gtccagctgt gattgctgct
     5941 gcgaaagtac agccagcgcc gtgattgtgg cttggagaga ttttttctac ttcatagata
     6001 gtaaattctt tgccatcata tagtaggtca attgctttgt cgctttctag ggcttttccg
     6061 cctttgataa ctacgtattt agcacctaat tcgatgattt ttttcgctgc ttttttcata
     6121 tcatctaatg tagttaattt gccaagaccg gataattgac ctgcttcgaa taggtttggt
     6181 gttgtgattg ttgcttttgg aagcagtagg tcgcggatag cttccgcgtt ttctggttgg
     6241 attaattcgt cttcgccttt acaaaccata acgggatcga ttacgacatt ttttaaatca
     6301 tatttgtcga tggcttcgcg tgtagcttta atgatgtcaa ttgaaccgag catacctgtt
     6361 ttcattgcgt caacaggacc accagaaagg attgttttaa gttgttcgcg aacaagttgc
     6421 gcatcaattg gagtaacgcc gtgcgcccag ttgttatctg gatccattgt tacgattgtt
     6481 gtgattgcgc taaaaccata agtgccgtat tcttcaaacg tttttaaatc ggcttgtaaa
     6541 ccagcaccgc cacttgaatc agaacctgca atagttaatg tttttttgat tgtcatcgtg
     6601 tttcctccta taaataaact ttagtcattt gtttctaaca ttttatagat ggctgctgca
     6661 acgccgtgct catcattcga aagggttacg tgttctgcaa gatctttgac ttcttcttcg
     6721 ccgttaccca tagctacact ataaccagcc atttttagca tcgaaatatc attcatatta
     6781 tctccaattg caaaagtttc atcaagtgtt acgcctaatt tttctacgta atattgtaaa
     6841 gaaatacctt tttgtgcttc gcggtgagtg atttcaatat tatcagagaa agaagatgta
     6901 acggatagtt cggaatcttt ttctagtttt tgtttggctt ttgcaagaat gtctttatca
     6961 gaagagaagg aaatgaattt tagaatggtt aaatctttat tgcctaaaat acgttctaca
     7021 tctggaattt cgtgaacgtc cttcgattca aaacgttctt ctactttgtc cataatggtt
     7081 tctgcgggaa cgtctgggtg gatgcgtttg tgcatttcaa tcataaattc tttgccacga
     7141 gctttgtctg ttgtgattgg gcccatgtca gtgaaaaatt cggtatacat acctaattca
     7201 gtcagcgtgt tgtaagtgtt tcttgctagg tttctatcga tcggatgttg caaaattatt
     7261 ttgccgtgtt catcgcggat ttccgcacca ttcatacaaa ttgctggtgc atataaatta
     7321 gctttattaa ttaaccccat tgcatcgtca tacatacgtc cggtgcaaag aacgaaatga
     7381 attcctttgg cgcgggcttt ttcgattgcc tcgacgtttt cttgtgcaat ctcgatatca
     7441 gagttaagta gtgtgccatc catgtctgaa gcaataactt taatcataat attaaattcc
     7501 tccccaattt tacctactcc actagaatat cattttttta agaaaaatgc acaaaaggta
     7561 gctgcgcgta gttttttagg tggagcgatt actttactat atttctgtga ttcatttggt
     7621 tataatgaat aagaataaaa cgtggatagg atgtgtcagg atgaaaacag aactagaaaa
     7681 gatgattgca ggagaaatgt atgatcctag cgacagagag ctcgcacacg gaagaaatcg
     7741 tgcacgtaag ttctgcagag agattaacga tgcgatggat tcagagtccc gtgcaagcgt
     7801 gctgaagcgc ctattcggcg gaacaaaaga gaatgtatat gtggaacctg attttcgtgt
     7861 tgattacggt tctaatatat atgtaggcga aaatttttat gctaattttg attgtgttat
     7921 tttagatgtt tgcgaagtac atattggtga taattgtatg atggcgcctg gagttcatat
     7981 ttatacggca acgcatccgc ttgatccagt agaacgtaat agtgggctag agcttggtaa
     8041 accagttgaa attggcgata atgtttggat tggtggtcgg gcaattatta atccaggggt
     8101 taagcttgga aataatgtcg tggttgcttc aggcgcagtt gtaacgaaaa gcttccccga
     8161 taatgtcgtt cttgccggca acccagcacg cgttattaaa acaattgagg ttgaggaaaa
     8221 atgattattg cagattcaaa gatttttgaa caaatggaaa acgaattagc gaaagcaaaa
     8281 gcagcaacca caaaagcgag tcaagataag catttgcatg gtttgatgct gcttgttcag
     8341 cttgcaaaaa caggcgatga gacaactgcg gctgtagaac cgattgctat tcagtcagca
     8401 gaaccggcgc aaattgcaag tatggacggg aagaaaatag agttagaaga cggcgcgaat
     8461 ggagactcgt tgcttgattt ttagggggta actatgaaaa aaacaattat tacgggagcc
     8521 atttttgcag ggctggcagt tttactaggg gcttttgggg cacatgcttt aaaagacgta
     8581 cttggaagtt atgcgagtac ttgggaaacc ggcgttcagt accaaatgtt tcacgcagga
     8641 ggcattttag ttgtagggct attgatggaa aaacaagcta gtcggcttta cacatgggca
     8701 gcgattttat tttcggtcgg aattgtcttt ttctcgggta gtttgtatgt gttaagtatt
     8761 tctaaagtat ccattttagg tgcgattacg cctatcggtg gtgtttgctt tgtcgttggt
     8821 tggttcttgc taattttagg agtatcaaga agaacgatga gtagatatta aatcaaaata
     8881 atcgtctttt cgcgttcatt tcagtgaaaa gacgattgtt ttttcttatt ggcaaataag
     8941 tgctaaaata aaggaatcat aatttataag gagacagcaa ttacatgact tatgcacttg
     9001 aaataaaagg gttaagaaaa atttattcca ctggggtcga agcgttgcgc ggtgtggatt
     9061 taacggtaga agaaggagat ttttatgcac tgcttggtcc taatggtgcc gggaaatcaa
     9121 cgacgattgg tattattact tcactagtca ataaaacatc tggtcaagta agcgtatttg
     9181 gctatgatct cgatacagat atagttcgag caaaacagca aatcggacta gttccgcaag
     9241 agtttaactt taatccgttc gaaacggttc agcaaatcgt tgttaaccaa gctggctatt
     9301 acggtgtttc tcgtaaggaa gctatcaaac gtagcgaaaa atatttaaaa caatcgaatt
     9361 tgtgggagaa acggaatgaa cgtgcgcgga tgctttcggg cgggatgaaa cgccgcttga
     9421 tgattgcgcg ggctctcatg catgaaccga agctgcttat tttagatgaa ccgactgctg
     9481 gtgtcgacat tgaacttaga cgtgagatgt ggacgttttt aagagagttg aacgaaagcg
     9541 gtacgacgat tattttgacg acgcattact tagaagaagc agagatgctt tgtcgtaata
     9601 tcggtattat tcaatctggg gagttaattg agaataccag catgaaatca ctactttcta
     9661 aattgcaatt tgaaacgttt atttttgatt tagaaccgta tgaagaagct ttcgaaatta
     9721 cgggttataa tcatgtgttt gaagataagc aaactttgtc tgtggaagtg gaacgtaatc
     9781 agggagttaa ccatatcttt gagcaattaa gcgaacacgg tattaaagtg ctttcgatgc
     9841 gtaataaatc gaatcgcctg gaagaactat tcttgaaaat tacagaagaa aaacatcaag
     9901 tgggggagaa acatgtttaa tctatatttt acagctttaa aaagtctagc ggcgaaagaa
     9961 acgaatcgct atatgcgaat ttgggtacaa acactcgtgc cgccagttat cacgacttcg
    10021 ctttatttta ttattttcgg gaaaatgatt ggtagccgca ttggggaaat gaatggcttt
    10081 tcttatatgg agtacattgt gccggggctg attatgatgt ccgtcattac tagttcttac
    10141 gccaatgtat cgtcttcctt tttctcgcaa aagtttcaga aaaacattga agaaattctt
    10201 gttgcgccgg tgccaacgca tattattatt tggggctttt tgattggtgg gattggtaga
    10261 agtgttttag ttggagcact tgtcacgctt atttcgatgg tgtttgtgcc gattcacatt
    10321 cattcgtgga cgattggtat tattaccttc ttaatgacgg cgattttatt ttcactcgcg
    10381 ggacttatta acgggatttt cgctagatca tttgacgatg tatccattgt cccaactttt
    10441 gtcttacaac cgttaacgta tctaggcggc gtattctacg cgatttcgat gttaccgcca
    10501 atctggcaag cgatttctaa agtgaacccg attgtctata tgatttccgg attccgctac
    10561 ggtttcctag gtgttacaga tgtaccagta gcaatttctc tatccattct tgttgtattt
    10621 agtgccgttc tttactcgat ttgttggtat ttaattagta aagggcgagg acttcgaagt
    10681 taatagcgat tttttcaaag agagagcgga tttccgttct ctttttttca tgtttactac
    10741 aattcttttt caatttgatg ttaaacgttt tagcgtaaaa ctggagggaa gacattaagt
    10801 aatgggggta gtgaaaatgg gaaataaaaa agtgaagcga aaacttggcg ctaatatttg
    10861 gtggatactt atattggcca ttttaataat tttcgtagcc tacttagtca tgggttacgt
    10921 tgcaaaaata taggaggttt ttatgatgaa taaagaaaat ccattaaaca aataccatac
    10981 aggaaaattt gaaaagcaac gccaggatta tcctggtttg caaagtaaaa tgacgcctgt
    11041 tccagatacg ggcgaatcaa gttatcaagg cgcgaataaa ttaaccggga aaaaagcctt
    11101 tgtaacagga ggcgactcgg gaataggtcg agctgcggta attgcctacg ctcgagaagg
    11161 tgctgatgtc gcgataaatt atcatccgga tgaagaagta gatgcacagg aagttaaagc
    11221 gattgttgag gaagctggac agaaatgtgt cttattacca ggtgatttaa gaaaagaagg
    11281 tttagcgaaa gatttagtaa aaaaagcata taacgagtta ggtggactag atattctagt
    11341 gctaaacgct ggactacagc aatatcaatt agatattcaa aaacttccag ctgaacaatt
    11401 acgtgacaca tttgaagtga acgtcttctc cgttgtgttc gcaattcaag aagcacttaa
    11461 ttacttaaaa gcaggagcaa gtatcatttt aacgtcctcc attcaaggcg ttaaaccaag
    11521 cgctcacctt gttgactatg caatgacaaa aagtagttta atttcgctta ctaaaagttt
    11581 agcggcacaa ctaggggaaa aaggtattcg aattaatgcg gttgcaccag gaccaatttg
    11641 gacggcgctg caaatttctg ggggacaacc acaagatagt attcctgcat ttggtcaaga
    11701 tcagccactt ggacgagcag ggcaacccgc agaacttgcg agcgcttatg tgctactagc
    11761 atcagatgaa gcaagttata caacgggcca agtatacgga attaccggcg gagctcctat
    11821 taattaaaag cgaggtgaaa gttcgtgccg tggacaaaaa atgattatcc ggattcgtgg
    11881 aaaaatctaa gaaagaccga acgcgaaaaa gctattgaaa tcggcaatgc cctattaaaa
    11941 gatggctact cagaaagccg cgctatccca attgccactt cgaaagcaga agaatggtat
    12001 aaaaatcata aggaatcgta atgtttagat gaaaaaatac ttggaacgct aggctttaag
    12061 tctattgttt caagtgtttt aattttgata aaaaaagtgt actatttaaa ttaagagaga
    12121 tgatgacaac taggaggaac tttttatgaa taaaagaaga tggattttca gcactgtggt
    12181 tgcagctttc ctattgatta ttggaggatt tttagtttat caacagatga caccaaaacc
    12241 attcaccgaa gtagtggcag aagctaaaat cgacggttat gagagtgggg atgaattaga
    12301 aaacgctagt actgtcatcg taacaggtca actagaaaaa cgcggagatt caataataga
    12361 gcgagcttca gatgatgctg tgataggtgt atatagaatg tctactttta aaatagccca
    12421 agttttaaaa aacgaaacgg atgacaactt agcaaaagaa atgacaatat ctgtttatga
    12481 aaatgaaggt tacgatgcca aagcgaatac gacataccat atcgctggct atacaaaaat
    12541 ggaaaaagaa gaaaaatatc tgttgttgtt gcaaaaagat tcagaagatg actattatgt
    12601 cccgacagcg gttattttcg gaaaaataaa cctcaatccg aataaacgaa atgaattatt
    12661 tcctaaaaat agcgacacag aatcagcaat caataaagta caagccgaag ttttaaaaaa
    12721 tcttgaaaat gaaattgagc gagagaataa ataattgtac tctgttgcat tttagttaaa
    12781 ttcgtcatct aattttaata caaaaaaagg gtttggattg ggggagacgg gtattatata
    12841 accataagca atgacaatgc cattactttt tctccctttt ttgtagtggg ttgtctttac
    12901 ttaccttaaa ctccctttta tacttttagc ggttgttagc agccactaag agtatttttt
    12961 tgtaaaaaac actaaataaa tgaaaactcc tcgaacaagg gaaagttcga ggagttcggc
    13021 atttaccaat atttataaat gccactgggg attttctaag tgaacaaaga tatggatgtt
    13081 tgggagagca tccacttgga gaatttacca tagatagata gcgacaagtt gtaatgtagt
    13141 ataaatcata caattcttgt
//
LOCUS       DASDXX010000063        12932 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.063, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000063 DASDXX010000000
VERSION     DASDXX010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12932
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.063"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1068
                     /gene="gtfA"
                     /locus_tag="U0280_001415"
     CDS             <1..1068
                     /gene="gtfA"
                     /locus_tag="U0280_001415"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM2271366.1"
                     /translation="KDLDLIYKRKDKAPFQEVEFADGGTELVWNTFGEEQIDLDVTAE
                     VTKEFIRQTIKNMAAHGCSILRLDAFAYAIKKLDTNDFFVEPEIWGLLDEVKAEAAKY
                     DMELLPEIHEHYSIQMKIANHDYYIYDFALPMVMLYSLYSGRVERLAKWLEMSPMKQF
                     TTLDTHDGIGVVDARDLLTDEELDYTSAELYKIGANVKKIYSSEKYNDLDIYQINSTY
                     YSALGDDDKSYLLARVIQCFAPGIPQIYYVGLLAGKNDIDLLEETKEGRNINRHYYTI
                     DEIKNEVKRPVVKALCNLLRFRNTSEAFDLEGSIEIETPSSNEIVIIRKNKTNKITAI
                     LKANLSTKTFQISENERNILI"
     gene            1134..1379
                     /locus_tag="U0280_001416"
     CDS             1134..1379
                     /locus_tag="U0280_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271367.1"
                     /translation="MVIVLLYNAKRIETVFLCLLLSENAVENQAFAIDFGKIEDIDVA
                     FKNTKRYKLFPSCTDTFKENYFLGSFSNMKSAFFLSK"
     gene            1625..5179
                     /gene="rpoB"
                     /locus_tag="U0280_001417"
     CDS             1625..5179
                     /gene="rpoB"
                     /locus_tag="U0280_001417"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM2271368.1"
                     /translation="MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL
                     DEGLREMFRDISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI
                     NKETGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKG
                     FGSTVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDND
                     YLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY
                     KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQIIPNLENGVGFRTL
                     RPTDGVMEDSVLVQSIKIYAPNDDEKEINIIGNAYIEENVKHITPSDIISSISYFFNL
                     LHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDMTTITPQQLI
                     NIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRERAGYEVRDVH
                     YSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPETNRVTDKIDYLT
                     ADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSENLAVEKERIDYMDVSPKQVVSVAT
                     ACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAKDSGAAVTAKHDGI
                     VEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRPNVAEGDRVVKG
                     EILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFES
                     EARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELT
                     AEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYI
                     VQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQV
                     LELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNR
                     ISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
                     AAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKML
                     SADEEEIEMRDMDDDDFTNQNDAFNIVQPENTAAEKTE"
     gene            5350..8955
                     /gene="rpoC"
                     /locus_tag="U0280_001418"
     CDS             5350..8955
                     /gene="rpoC"
                     /locus_tag="U0280_001418"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEM2271369.1"
                     /translation="MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPERD
                     GLFCERIFGPMKDWECSCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVS
                     HIWYFKGIPSRMGLVMDMSPRALEEIIYFASYVVTEPGDTPLEKKQLLSEREYRVYRE
                     KYGKGFSAGMGAEAIKKILADIDLEKETNDLKEELKSAQGQRRTRAIRRLEVMEAFRN
                     SGNNPSWMVLDVLPVIPPEIRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
                     PNIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
                     RVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVGRGLAHNIKSAKRKIER
                     MAPEIWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF
                     DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLEREN
                     AVGEGTIFKDINEAQLAYQNGYVHLHSRIAVFAGSIPNERFTDEQRNQLLITTVGKLI
                     FNTILPKSFPYINEPTKFNLEIETPAKYFVDTTTDVRAHIAAQELIDPFKKKILGNII
                     AEVFKKFHITETSKMLDRMKDLGFKISTKAGMTVGIADILTLEEKHEILEKAHDTVEK
                     ITKSFRRGLITDDERYERVIGVWNAAKDEIQGKLILSLDRLNPIFMMQDSGARGNISN
                     FTQLAGMRGLMADPSGRIVELPITSNFREGLTVLEYFISTHGARKGLTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLTIKAIREGTEIIEPLEERLEGRYSRKTIRHPE
                     TKEVIARENDLITEAIATQIVDAGIEEVTIRSAFTCNTKHGVCKKCYGKNLATGTEVE
                     VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQAIIT
                     EVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTARLRVEEGTIVERGEALTEGSVD
                     PKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI
                     LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKASLETDSFLSAASFQETTRVL
                     TDAAIKGKRDELLGLKENVILGKLVPAGTGIGRYRKLKSEVIKETAEVTDEITNI"
     gene            9031..9576
                     /locus_tag="U0280_001419"
     CDS             9031..9576
                     /locus_tag="U0280_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2271370.1"
                     /translation="MITHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRENAEETLEK
                     VKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIF
                     DFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFV
                     IPVWDLADVPEALLLLKKISA"
     gene            9642..11102
                     /locus_tag="U0280_001420"
     CDS             9642..11102
                     /locus_tag="U0280_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2271371.1"
                     /translation="MTEVKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIP
                     KEERTQDHALDVSKAEIEAIIAGKVEGRFPKRDGVDFYHHYKEDIALFAEMGFKTFRL
                     SLNWARIFPNGDDKEPNEKGLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGW
                     ADRRVIGFFTNYAETVFKRYKNKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPLELS
                     YQAGHHQFVASALATKLAHEIIPGSQVGCMLARMATYPATNNPDDILKAQYENQQNLF
                     FTDVHARGEYPSYMNRFFQENDIHIVKEVGDDEILKAHTVDFISFSYYMSLSATASPE
                     GDRSAGNLMGGVKNEYLESSDWGWQIDPKGLRWTLNDLYSRYELPLFIVENGLGAYDT
                     VEEDGKIHDDYRIDYLRKHIEQMKEAIADGVDLIGYTSWGPIDLVSASTSEMSKRYGF
                     IYVDQDDWGKGTLERSRKDSFFWYKKVIETNGEDLD"
     gene            11376..12848
                     /locus_tag="U0280_001421"
     CDS             11376..12848
                     /locus_tag="U0280_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2271372.1"
                     /translation="MKQRKTSLLHVLLVVTAILGISLWVNASHGMEAQAESIAQPAPI
                     NEIFTDPALAEAVKTELGKADVSDVVSQADLDQITKIDAEGKGISSLEGIQYLTNLNS
                     LSVTSNQISDISPLTNLTKLDSLYLGENQISDLTPLSRLTTLTFVQLSINQIKDVTPL
                     ANLTNLTYLDLRENQISDASPLVNMTNLTVLHLEKQQITADPVVYQTNLVAPDILKNA
                     YGEVVPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPI
                     VEAPVNYITTFDVDGTTTTENVAVDSLITEPAAPTKEGYTFSGWYDAETGGNEWDFAV
                     DKMPATNMTLYAQFTINSYTAAFDVDGETTNQKVDYQALLQEPTAPTKDGYTFVGWYD
                     AKTGGNEWNFATDKMPAGDVTLYARFTKNASSDNSQIAPGNDDKNDKDNLTIKANDSA
                     NATSTKLPKTSDDSSMVPTVLGTLFIGGALLILRKKTTNI"
BASE COUNT         4204 a         2453 c         2696 g         3579 t
ORIGIN      
        1 aaagacttag atttaattta taagagaaaa gataaggcgc cttttcaaga agttgaattt
       61 gctgatgggg gaacggaatt agtttggaat acttttgggg aagaacaaat tgatttagat
      121 gtgacagccg aagttacaaa agaatttatt cgtcaaacga taaaaaatat ggctgcacat
      181 ggttgttcta ttttgcgtct tgacgccttt gcttatgcaa ttaaaaaatt agatacaaat
      241 gatttttttg tagaaccgga aatttggggt ttactggatg aagtgaaagc agaagcggcc
      301 aaatatgata tggaattatt accagaaatt catgaacatt attccatcca aatgaaaatc
      361 gcgaaccatg attattatat ctatgatttt gcgttaccca tggtgatgct gtactcgtta
      421 tatagtggcc gagtggaacg tttagctaaa tggttagaaa tgagtccgat gaagcaattt
      481 actactttag atacgcatga tggcattggc gttgtggatg cacgcgattt attaacagat
      541 gaggaactcg attatacttc agcagaatta tacaaaatag gagctaatgt taaaaagata
      601 tattcctctg aaaaatataa tgatctggat atttatcaaa ttaatagtac ctattatagt
      661 gctttgggtg acgatgacaa aagttacttg ttggcaagag taattcaatg ttttgcgccg
      721 gggattccgc aaatttatta tgttggttta cttgctggca aaaatgatat tgacctttta
      781 gaagaaacga aagaaggtcg taatattaat cgtcattact acacaataga tgaaattaaa
      841 aatgaagtaa aaagaccagt tgttaaagcg ttgtgcaatt tactgagatt tagaaatact
      901 tctgaagcat ttgatttgga aggaagtata gaaattgaga cacctagctc aaatgaaatc
      961 gttattattc gcaaaaacaa aacaaataaa attacagcga tattaaaagc gaatttaagt
     1021 actaaaacat tccaaatcag cgaaaatgaa aggaatattt taatttaaca ttttataaac
     1081 acgaatgagc ctcttcattc gtgtttattt ctattttcta ttgacattgg ctaatggtta
     1141 ttgtattatt atataatgcc aaaagaatcg aaactgtttt tttgtgttta ttattaagcg
     1201 aaaatgctgt cgaaaatcaa gcatttgcaa tcgattttgg caaaatagaa gacatagatg
     1261 tggctttcaa aaatacaaaa cggtataaac tttttccgtc ttgtactgac acttttaagg
     1321 aaaattattt tctagggagt ttcagcaata tgaaatccgc tttctttttg tctaaataga
     1381 atattttttg tgcgaaagtt ccacttatgt taactctgga aatgcttctt ggatgcgtgt
     1441 ttgcaagcca agattagaaa caaaaaggaa aattttgatg cacggtgttt aagccagtat
     1501 attttgcacg tagcaaaaaa ctgctagcgt cttaaacctc ggatacggaa ggttccattg
     1561 ttttcgcaac cataattaac aagtgtgctt ataaattttt taattaattt gaggggtgaa
     1621 tagtttgtca ggacattcag gacatgatgt aaaatatgga cggcatcgta cgcgtagaag
     1681 ttttgcgcga atcagtgaag tacttgaatt accaaactta attgagattc aaacagcttc
     1741 ttaccaatgg ttcttagatg aagggctacg tgagatgttc cgcgatattt cgccaattga
     1801 ggattttgcg ggtaatttat ctttagaatt cattgattac gatcttggag aaccgaaata
     1861 ctcggtagaa gaatctaaga accgtgatgc aaactatgcg gctccactac gcgtgaagtt
     1921 gcgcctaatc aacaaagaaa ccggcgaagt gaaagaccaa gaagtattta tgggtgattt
     1981 cccactaatg actgaaatgg gtacgttcat tattaatggg gcagaacgtg ttatcgtttc
     2041 ccaattagtt cgttctccag gtgtttactt caatggaaaa ctagacaaaa atggtaaaaa
     2101 aggctttggt tctactgtca tccctaaccg tggggcttgg cttgagtatg aaacagatgc
     2161 taaagacgtt gtacacgttc gtattgaccg tacacgtaaa ttaccagtaa ctgttttact
     2221 tcgtgcacta ggctttggtt ccgatcaaga aattattgat ttaatcgggg acaatgacta
     2281 cttgcgcaac acactggaaa aagacaacac tgacaatgct gaaaaagcac ttctagaaat
     2341 ttacgaaaga ttacgtccgg gtgaaccccc aacagttgat aacgctagaa gcttactagt
     2401 ttctcgtttc tttgatccaa aacgctacga tcttgcaagc gttggacgtt ataaaatcaa
     2461 caaaaaatta catctaaaaa accgtctatt caaccaaaca ttagcagaaa ctttagtgga
     2521 tccagaaact ggtgagatta tcgcttctaa aggtgacatt ttggatcgtc gtaatttaga
     2581 tcaaattatt cctaatttag aaaacggtgt aggtttccgc acacttcgtc caactgatgg
     2641 agttatggaa gatagcgtac tcgttcaatc tattaaaatc tacgcaccaa atgatgacga
     2701 aaaagaaatc aacatcattg gtaacgcgta tattgaagaa aatgtaaaac acatcacgcc
     2761 ttctgatatt atttcatcca ttagctactt ctttaacttg ctacatggtg ttggcgatac
     2821 agatgacatc gatcacctag gtaatcgtcg tcttcgttct gttggtgaac ttttacaaaa
     2881 ccaattccgt atcggtttat cccgtatgga acgtgtagtt cgtgagcgta tgtctattca
     2941 agatatgact acaattacac cacaacaatt gattaatatt cgcccagtag ttgcttctat
     3001 taaagaattc tttggtagct cgcagttatc tcagttcatg gatcaaacaa atccacttgg
     3061 cgaacttacg cataaacgtc gtctttcagc gcttggacct ggtggtttga cgcgtgaacg
     3121 tgctggttat gaagtacgtg acgtgcatta ctctcactat ggtcgtatgt gtccgattga
     3181 aacgccagag ggaccaaaca ttggtttgat caactccctt tcttcctttg cgaaggtaaa
     3241 taaattcggc tttatcgaaa cgccttaccg ccgcgtagat cctgaaacaa accgtgttac
     3301 tgataagatt gattatctaa ctgcggatga agaggataat tacgtagtag cgcaagcgaa
     3361 ctcgaaatta gacgaacaag gtactttcac agaagaagaa gttatggctc gtttccgttc
     3421 agaaaactta gcggtagaaa aagaacgtat tgactacatg gatgtatcgc ctaaacaggt
     3481 tgtatctgtt gcgacagcat gtattccgtt ccttgaaaac gatgatagta accgtgcgct
     3541 aatgggagcg aacatgcaac gtcaagcagt tcctcttatg caccctgaag ctccatttgt
     3601 tggaacaggt atggaacacg tatctgcaaa agactctggt gctgctgtaa ctgccaaaca
     3661 tgacggtatt gtagaacacg ttgaagctcg cgaaatctgg gttcgtcgtg tatctctagt
     3721 ggatggcaaa gaagtaactg gcggaattga taaatataca ttacgtaaat ttgttcgttc
     3781 taaccaaggt acttgttata accaacgtcc aaacgtagca gaaggtgacc gcgttgttaa
     3841 aggagaaatc cttggtaacg gtccatcaat ggattccggt gaacttgctc ttggtcgtaa
     3901 cgtactagtt gcgttcatga cttgggatgg ttataactac gaggatgcga tcatcatgag
     3961 tgaacgtctt gtaaaagatg acgtttatac ttcgattcat attgaagaat tcgaatcaga
     4021 agctcgtgat acaaaactcg gacctgaaga aatgactcgt gatattccaa acgttgggga
     4081 agatgcttta cgcgaccttg acgaacgtgg aattatccgt gttggtgctg aagtaaaaga
     4141 caacgacctt ctagttggta aagtaacacc aaaaggagtt accgaattaa ctgcagaaga
     4201 acgtttatta cacgctatct ttggtgaaaa agcacgtgaa gttcgcgata cttcattacg
     4261 tgtacctcat ggcggcggcg gaatcgtgct tgacgtgaag atctttacac gtgaagctgg
     4321 cgacgaacta ccacctggtg taaaccaatt agtacgtgtt tatattgtac aaaaacgtaa
     4381 aatccacgaa ggcgataaaa tggccggacg tcacggtaac aaaggggtta tctcccgtat
     4441 tttacctgaa gaagatatgc catttatgcc agacggaaca cctgttgata tcatgcttaa
     4501 cccactaggg gtaccatctc gtatgaatat cggacaagta cttgagctac acttaggtat
     4561 ggctgctcgt gctttaggaa ttcacgttgc aacaccagta tttgatggtg cgaatgaaga
     4621 agacgtttgg agcacagtgg aagaagctgg tatggcccgc gatgcgaaaa caattcttta
     4681 tgacggacgt tctggtgaag catttgataa ccgtatctct gtaggtgtaa tgtacatgat
     4741 caaacttgcc cacatggttg atgataaact tcatgcgcgt tcaactggac cttactctct
     4801 agtaacgcaa caaccgcttg gtggtaaagc acaatttggt ggacaacgtt ttggtgagat
     4861 ggaagtatgg gcactggaag cttatggtgc tgcttataca cttcaagaaa tcctaacgat
     4921 taaatccgat gacgtggttg gtcgtgtgaa aacttacgaa gcgattgtta aaggcgaaag
     4981 cgttccagaa cctggtgtgc cagaatcctt caaagtactc atcaaagagc ttcaaagtct
     5041 tggaatggat gttaaaatgc tttccgcaga cgaagaagaa atcgagatgc gtgacatgga
     5101 tgatgacgac tttactaatc aaaatgatgc cttcaatatc gtacaaccgg aaaatacagc
     5161 cgctgaaaag actgagtaat tcggttcgat aattgagact ccaaaacaat aagaaacaat
     5221 gatttgtttt ttgcaaaata taaaattaag cgatcgctaa gactttacct gaaaagtctg
     5281 ggaagtgtgc gggaatcccc aagcgcttcc taaagcgaat gctccaaact aatttaggag
     5341 gttgggcact tgttagatgt taataatttt gagtatatga aaatcggtct ggcatctcca
     5401 gataaaattc gttcatggtc tcatggtgaa gtaaaaaaac ctgaaaccat caactacaga
     5461 acgcttaaac ctgaacgtga cggcttattc tgtgaaagaa tttttggacc aatgaaagac
     5521 tgggaatgtt cttgtggtaa atacaaacgt gttcgctata aaggcgtagt ttgtgaccgt
     5581 tgtggagtag aagtaacgaa atcaaaagtc cgtcgtgaac gtatgggcca tattgaactc
     5641 gcagctcctg tttctcacat ctggtacttc aaaggaattc caagccgtat gggtcttgtt
     5701 atggatatgt ccccacgtgc attagaagaa attatctatt ttgcatctta cgtggttaca
     5761 gaaccaggcg atactccact tgaaaagaaa caacttttat ctgaacgtga ataccgcgtt
     5821 taccgcgaaa aatatggtaa aggtttctca gctggtatgg gcgcagaagc tatcaaaaaa
     5881 atcttagccg atatcgactt agaaaaagaa acaaatgatt taaaagaaga actaaaatct
     5941 gcacaaggtc aacgtcgtac tcgtgcgatt cgtcgtttgg aagttatgga agctttccgt
     6001 aattccggca acaacccaag ctggatggta cttgacgtgc taccagttat cccaccagaa
     6061 attcgtccaa tggtacaact tgaaggtggc cgttttgcaa caagtgattt gaatgactta
     6121 tatcgtcggg taatcaaccg gaacaaccgt ttgaaacgcc ttcttgatct aggtgcacca
     6181 aacattatcg tgcaaaatga aaaacggatg ctacaagaag ctgtcgatgc tctaattgac
     6241 aacggtcgtc gtggtcgtcc agtaacaggt ccaggtaacc gtccgcttaa atccctttct
     6301 catatgctta aagggaaaca aggtcgtttc cgtcaaaact tactaggtaa acgtgtcgat
     6361 tattctggtc gttccgttat cgtagttgga cctaacttaa aaatgtacca atgtggtctt
     6421 ccaaaagaaa tggcacttga attattcaaa ccatttgtta tgaaagaact agttggacgc
     6481 ggtttagcac acaacattaa gagcgctaaa cgtaaaatcg aacgtatggc tccagaaatc
     6541 tgggacgtat tagaagaagt tatccgtgaa catccggtat tacttaaccg ggcgcctacg
     6601 cttcacagac ttggtattca agcatttgaa ccaacgctag ttgaaggtcg cgcaatccgt
     6661 cttcaccctc ttgtatgtac agcttacaac gctgactttg atggtgacca aatggcggtt
     6721 cacgttcctt tatccgcaga agcacaagca gaagcacgta ttttaatgct tgcagcgcaa
     6781 aacattttga accctaaaga tggtaaacca gttgtaacac cttcccaaga tatggtgcta
     6841 ggtaactact accttacttt agaacgtgaa aatgctgtcg gtgaaggtac tatcttcaaa
     6901 gatatcaatg aagcgcaact tgcgtatcaa aacggctatg tacacttaca ttctcgtatt
     6961 gctgtatttg ctggctcgat tccaaacgaa cgtttcactg atgaacaacg caaccaatta
     7021 ttaattacga ctgttggtaa actgattttc aacacaatct taccaaaatc gttcccttat
     7081 attaatgaac caacgaaatt caacttagaa atcgaaacac cagctaaata tttcgttgat
     7141 actacaacag atgtgcgtgc tcacattgcg gcacaagaac taatcgatcc attcaaaaag
     7201 aaaatcctcg gtaacattat cgcggaagtc ttcaagaaat tccatattac cgaaacttca
     7261 aaaatgcttg accgtatgaa agatcttggt ttcaaaatct cgactaaggc cggtatgaca
     7321 gtaggtattg cggatatctt aacacttgaa gaaaaacatg aaattcttga aaaagcacat
     7381 gatacagttg aaaaaatcac taaatcattc cgtcgtggtc tgattacaga tgatgaaaga
     7441 tacgaacgcg ttatcggtgt atggaatgct gccaaagatg aaatccaagg aaaactgatc
     7501 ttgagtttgg accgcttaaa cccaatcttc atgatgcaag attccggagc tcgtggtaac
     7561 atttccaact ttacacagct agctggtatg cgtggactga tggctgaccc atccggacgt
     7621 atcgtagaat tgccgattac atctaacttc cgtgaaggtt taacggtctt agagtacttc
     7681 atttctaccc atggtgcgcg taaaggtctt accgatacag cccttaaaac agccgattcc
     7741 ggttacctta ctcgtcgtct tgttgacgtg gctcaagatg ttatcattcg tgaagacgat
     7801 tgtggcactg accgcggtct tacaattaag gctattcgtg aaggtactga aatcatcgaa
     7861 ccacttgaag aacgtctgga aggtcgttat tctcgtaaaa caattcgtca cccagaaaca
     7921 aaagaagtta ttgcacgtga aaatgactta attacagaag caattgccac tcaaatcgtt
     7981 gatgctggta ttgaagaagt aactatccgt tctgcattca catgtaatac aaaacacggc
     8041 gtatgtaaaa aatgttatgg taaaaacttg gcaactggta cagaagtcga agttggagaa
     8101 gcagttggta tcatcgctgc ccaatctatc ggggaaccag gaactcagct tactatgcgt
     8161 actttccata caggtggggt tgccggagac gatatcacgc aaggtcttcc acgtattcaa
     8221 gaaatctttg aagcacgtaa tccgaaaggg caagctatca tcactgaagt tggcggtgaa
     8281 gttgtttcta tcgaagaagg tcgtgatcgt caacaagaaa tcactatcca aggtacagat
     8341 gaccgccgtt cttacaacat tccttacact gctcgcctgc gtgtagaaga aggaactatc
     8401 gtagaacgtg gggaagctct aactgaaggt tctgtggatc ctaaagcctt gattcgtgtt
     8461 cgtgacgtat tatccgttca agaatatcta cttgcagaag tacaaaaagt ttaccgtatg
     8521 caaggggtag aaattggcga taaacacgtt gaagtaatgg ttcgtcaaat gttacgtaaa
     8581 atccgcgtaa tggatactgg tgatacaaac atcttaccag gtacattaat ggatattcat
     8641 acgtttacag aagccaaccg cgatgctatc ttaagtggta gccaaccagc aacaggtcgt
     8701 ccagttcttc tagggatcac aaaagcttcc cttgaaactg actccttctt gtctgctgca
     8761 tcattccaag aaacaactcg tgtcttgaca gatgctgcaa tcaaaggaaa acgtgacgaa
     8821 cttctaggac ttaaagaaaa tgttatccta ggtaaacttg ttccagctgg tacaggtatt
     8881 ggtcgttacc gcaaactgaa atccgaagtt atcaaggaaa cagctgaagt aactgacgaa
     8941 atcacaaata tttaatttta caaagccaag tgtgccgttc gcgcgcactt ggcttttttt
     9001 gttatactct agaaaaagga gtgaagtgat ttgattacac atgttatttg ggatatgggc
     9061 gaaacattaa acaccgtacc aaacacaaga tacgaccatc accctctcga tacttatcca
     9121 gaagtagtgc tacgggaaaa tgccgaagaa acgcttgaaa aagtgaaaca acttggattc
     9181 aaacaagcaa tcctcagcaa cactgcaaca agtgacacag aagtaattaa gcgcgtatta
     9241 actaattttg gtatcatcga ttattttgac ttcatttacg catccaattc cgagttacaa
     9301 ccagggaaaa tggaaaaacc agacaaaact atttttgatt tcacactaaa tgcccttcaa
     9361 attgataaaa cggaagcggt catggtcggg aatacattcg aaagtgatat tattggcgca
     9421 aatcgtgcgg gaatccatgc catatggctc caaaatccag aagtctgcct gcaagatgag
     9481 cgcctgcctc ttgtcgcgcc gccatttgtt atcccagttt gggacttagc tgatgttccc
     9541 gaagcccttt tactattaaa gaaaatttct gcttgacctg taatgcatta cacagagtaa
     9601 aataaaaaag tagaagaaat tagccggaag gggcgaacga aatgactgaa gtgaaaaaac
     9661 aatttccaaa aggattttta tggggtggag caactgctgc gaaccaagtt gaaggcgctt
     9721 acgatgtaga tggtaaaggc ctttccacag cagatatggt caaatttatt ccaaaagaag
     9781 aacgtacaca agatcatgca ttagacgtat ctaaagcaga aatcgaagca attattgcag
     9841 ggaaagtaga aggaagattc cctaaacgtg atggcgttga tttttatcat cactataaag
     9901 aagacatcgc attatttgcc gaaatgggct ttaaaacatt ccgcctatca ctaaactggg
     9961 cgcgtatttt cccgaatggt gatgacaaag agccgaatga aaaaggcctt gaattttatg
    10021 ataaagtgtt tgatgaatta ttaaaatatg acattgagcc acttgtgaca ctttctcact
    10081 atgaaacacc actaaatctt actttaaaat ataacggctg ggctgatcgt cgcgttatcg
    10141 gatttttcac gaactacgcg gaaacagttt tcaaacgtta taaaaacaaa gtaaaatatt
    10201 ggctaacttt taacgaaatc aatgttattt cacttagcgc atacactggt gggggcgtgc
    10261 tattagaaga cgcgaagaat ccacttgaac tttcttacca agcaggacat caccaattcg
    10321 tagccagtgc acttgcaaca aaattggcgc atgaaattat tcctggatca caagttggtt
    10381 gtatgttagc gcgcatggcg acttatcctg cgactaacaa tccagatgat atcctaaaag
    10441 cacaatatga aaatcaacaa aatctatttt tcactgatgt ccatgctcgc ggtgaatatc
    10501 caagctacat gaaccgtttc ttccaagaga acgacattca catcgtaaaa gaagttggcg
    10561 acgacgaaat cttaaaagca cacacagttg atttcatctc attcagctac tacatgtccc
    10621 tatccgcaac agctagccca gaaggcgacc gctctgctgg gaacttaatg ggtggcgtga
    10681 aaaatgaata cttggagtcg tccgattggg gttggcaaat tgaccctaaa ggcttacgct
    10741 ggacactaaa tgatctttat agccgctacg aattaccact tttcatcgtg gaaaatggct
    10801 taggtgctta tgatacagta gaagaagacg gcaaaatcca tgatgattac cgaattgact
    10861 acttgcgcaa acatatcgaa caaatgaaag aagcaattgc tgatggcgta gatttaattg
    10921 gatacacaag ctggggacct atcgacctag taagtgcctc cacaagcgaa atgtccaaac
    10981 gttacggctt catctacgta gaccaagatg actggggcaa aggaacatta gaacgctccc
    11041 gcaaagattc attcttctgg tataaaaaag taattgaaac aaatggtgaa gatttagatt
    11101 aataggtaga gtacagcccc gctttggcgg ggctgttttt ttacgctact tcccacaaga
    11161 aaccaatccc gcactcactg aacaaaaaaa ttcgattaat cgccacatct ttcgcgcaga
    11221 agggtccaat tcgggaaaaa atggcgtgca tcttctgtta taattattca ccaaagacta
    11281 gtaatatttt acgccaagtc atccaagata gtacagattc aaggtgtatt taatgatgga
    11341 ttatctactc agtcaaatta taaggagacg ataaaatgaa acagagaaaa acctcattac
    11401 tacatgtttt acttgtagta acagctatct tgggtattag tttatgggta aatgccagtc
    11461 acgggatgga agctcaggca gagagtattg cgcaaccagc gccaattaac gaaattttca
    11521 cggacccggc attagcagaa gcggtgaaga cagaacttgg aaaagcagat gtttctgatg
    11581 tagtaagtca agcagacttg gatcagataa ctaagattga tgcagaaggg aaaggaataa
    11641 gttcgttaga agggatacaa tatctaacaa atctcaactc tttaagtgta acctccaatc
    11701 agatttctga tatttccccg ctgacgaacc ttactaaatt agactcttta tatttagggg
    11761 aaaatcaaat aagtgattta actccgcttt caagattgac cactctgaca ttcgtacaat
    11821 tatctataaa ccaaataaaa gatgtgacac ctctagctaa tctaacgaat ctaacttatt
    11881 tagatttacg cgaaaatcaa ataagtgatg caagtccttt agttaatatg accaacttaa
    11941 ccgtattaca tttagaaaaa caacagataa cggctgatcc agttgtatac caaactaatt
    12001 tagttgcacc ggatattttg aaaaatgctt atggtgaggt agtaccaccg acaacgatta
    12061 gtaataacgg aacatttgct agtccaaata tcacttggaa tttagatagt ttcacaagcg
    12121 aagttagtta tgattttaat caaaaaatta cacttggtga taatgggaag gtaacttttg
    12181 caggaactgt tgttcaaccg atagtagaag caccggtcaa ttacattact acatttgatg
    12241 tggacggaac gacgacaacg gaaaatgtgg cagtggattc tttaataacc gaaccagctg
    12301 cgccaacaaa agaaggttat actttctctg gatggtatga tgccgaaact ggtggaaatg
    12361 aatgggattt tgcagtagat aaaatgcccg ctaccaacat gacgctctac gcccagttca
    12421 caataaatag ctacacggcg gcatttgatg tggacggaga aacaactaat caaaaagtag
    12481 attaccaagc tctactacaa gaaccgactg ccccgacgaa agatggctac acatttgtag
    12541 gatggtacga tgcaaaaaca ggtgggaatg aatggaattt cgcaacagat aaaatgccag
    12601 cgggtgatgt cactttatat gctagattta ctaaaaatgc tagctcagac aattctcaaa
    12661 tagcccccgg aaatgatgat aaaaacgata aagataatct aacaattaaa gctaacgata
    12721 gtgcaaatgc gacgagcact aaacttccaa aaacaagtga cgattcaagt atggttccta
    12781 ctgttttagg aacgctcttc atcggaggcg cattactaat cttacgaaaa aaaactacta
    12841 acatttaaga taaagtagat ttggtttcta ttttccgtag agaccaaatt ttttgttaat
    12901 taggtctaaa aaagggtatc tattattaat ga
//
LOCUS       DASDXX010000064        12929 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.064, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000064 DASDXX010000000
VERSION     DASDXX010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12929
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.064"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1089
                     /locus_tag="U0280_001422"
     CDS             <1..1089
                     /locus_tag="U0280_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2271373.1"
                     /translation="SLIIIGPVSTYASQLLAKGALGLYSLSPMIAGFFLAGIWQVAVM
                     FGLHWAFIPIFINNISVLGYDPINAMLYCTVFAQTGAVLAVMLKTRNQELRSLSITAT
                     ISGFLGITEPAIYGVNLPYKKPFIMACVGSAFGGAIAGMSAAKMFGGFASGGIFGIPM
                     FINPDGIGWDFWGFLISLVVAFSVALILTYFFGFKDKVEEVVIQTGEKATLDETIYSP
                     LQGEIIALNDVKDEVFSAGIMGAGVAILPASGEIRAPFDGTVLSVFQTKHAIGLISKQ
                     GVELLIHVGLDTVNLNGQFFDIEVSESEEIKKGDLLGRFELDAIKKAGYDITTPIIVT
                     NSATLADVITVNLGKSVDNNQKILEAKA"
     gene            1109..2374
                     /locus_tag="U0280_001423"
     CDS             1109..2374
                     /locus_tag="U0280_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4038 domain-containing protein"
                     /protein_id="HEM2271374.1"
                     /translation="MLKQSADKRRIEKNDKPFFYLADTVWSAFTNIDLTDWAYYLKVR
                     KEQGFNVLQINILPQWDRSILKKMQEPFGISEGFFDLKAKNEAYFKHAEKMLEMAVNQ
                     GFTPALVLLWCNYIPETWGAKFGTSPLFRKEDIKPYTEMMLEHFEQFEPIYIISGDTD
                     FPTETVAAYYLEALETVSKKAPHALKVLHICGRLKDIPENLQTHPALDLYFYQSGHNS
                     EHQSMAYTLAEHFSQLEPIKPVINSEPCYELMGYSRQKYGRFSREDVRKAAWQSVLSG
                     AIAGISYGAHGIWSWHEEGSTFGSALGEGFVSPFNWRQALHFEGATDYAFLKSFILAN
                     DLTTLAPINLVLNQTPEIRAAETEKVVIIYVPSNVPIYLKGQFASLDDYAIDLEQGKK
                     VSLTKILHEEKTEIQMTPFLKDSLYVIHK"
     gene            complement(2435..3238)
                     /locus_tag="U0280_001424"
     CDS             complement(2435..3238)
                     /locus_tag="U0280_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HEM2271375.1"
                     /translation="MQFFRLLWVFTWKQALCCIFPGIIFISLALTKLIDIPFIARYDL
                     LLIICLGTQVLLIKFGLETWDELKVIMVFHLIGLGLEIYKVHMGSWSYPEPGLMKLFG
                     VPLYSGFMYSSVASYICQAWKRFDLKMTNWPNIWLVSSLCITIYANFFTHHFIMDFRW
                     ILIVLVLVLFRKTYVYFKVSSTQLKMPLSFSFLCIAFFIYLAENIASFYGAWSYPDQL
                     IAWRPVHVSKITSWYLLVIISIIIVAQLKFVKQKLEQTSVKAKSEATLK"
     gene            complement(3306..3887)
                     /locus_tag="U0280_001425"
     CDS             complement(3306..3887)
                     /locus_tag="U0280_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEM2271376.1"
                     /translation="MKNEKVNVGIVLAGGRSSRFGEPKAFFQDEATGKTWVELTVSKL
                     LPLCDMVFVSANHENHSKLVALFDAEPSIEIIPDQTAFSEFGPLGGIYAVMVEANAYQ
                     KANFLVLPVDMPFLTPKEIGRLADYPNHFAKTAQANHYLVANIPYSREVLHHLLQDEQ
                     HRVRALLEKLHTKPLAFEEDAPFRNINHQNELF"
     gene            complement(3868..4530)
                     /locus_tag="U0280_001426"
     CDS             complement(3868..4530)
                     /locus_tag="U0280_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2271377.1"
                     /translation="MLRLQFHKKLPFHDLNIDYTFEKPVTAMMGASGSGKSTLFQCVS
                     GLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQNLALFPNMNVYENIAFGLKV
                     KKKKKKEQAEIQQQVRKMSDYLQISHLLYSSVQKLSGGEKQRVAMTRAMITEPKLLLL
                     DEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKR
                     KS"
     gene            complement(4533..5204)
                     /locus_tag="U0280_001427"
     CDS             complement(4533..5204)
                     /locus_tag="U0280_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter permease"
                     /protein_id="HEM2271378.1"
                     /translation="MFTSVWHTLLVATISTFLAFMTMLPLSYYFAGRKSRFQLPVEIL
                     ILLPLVLPPTVVGLVLLNVLGRNDFIGGVLWDTFDFSFIFSLSGAIVATTIIILPIMY
                     QGLKSAFLSIDHELVWAAETLSANKKQIFTKIILPNCWQPILAGVLLSFCRAMGEFGA
                     SLMVAGYIEGKTDTIASSIYFMVQQGDMRTAIYLGLINVIIGVFALLVIHVLTIRQSN
                     LTRGM"
     gene            5309..6079
                     /gene="modA"
                     /locus_tag="U0280_001428"
     CDS             5309..6079
                     /gene="modA"
                     /locus_tag="U0280_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2271379.1"
                     /translation="MKKIALIICCGLLLLLGACEDTPEKAKTTTIHISAAASLKDTID
                     DVKPLFEKANPTIKLSFDFGGSGQIRERVESGAPIDGVLLASKKDADTLIKQNLAEKT
                     KEFAGNELVLIEPKNVDQKAGMNLEQLLNDASKIAIGDPESVPAGAYAKQTLENLNLY
                     NAEKAKLVLATDVRQVLSYVEAGNADAGFVYQTDALLSKKVQVKAKIDEKLHDPIAYY
                     SAQVSDSDKKEETATFLDFMNTSEAQKILEKYGFKAAN"
     gene            6174..7397
                     /locus_tag="U0280_001429"
     CDS             6174..7397
                     /locus_tag="U0280_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEM2271380.1"
                     /translation="MIEKRNTIRMEQAREILCNQITHLPVEKKCVTEALNQVLQEPIF
                     APFPAPYFRRSGYDGFAITEEDDENYPITLHVVAEVPCGETYDKPLKPGETVRIMTGA
                     KVPDNASKIIMLEQSREADNENEIVLINTQKSTNITEIGTEFAKGDLLLDRGHILNAG
                     SISLLSSFGIQEVQVIRKPKVAILSTGSELVSAGNPLPDGKIFNSNQPLLENLLKVHH
                     AEICAAEQLPDNYEDTKKRLLELTQIADLIITTGGVSVGDFDYMADIAKKEAELLFNK
                     IQMRPGSPTTGMWLDNTLIIALSGNPGACFTGFYLFVEPVLATLMGKDTTETTKVRAK
                     MASDYTKNNGYDRFLRGTYRLSDEGEYLVELVGSDMSSALGNLHLTTCLFKIPRGKVG
                     KLKGEEVEAWLLSSK"
     gene            7376..7861
                     /gene="mobB"
                     /locus_tag="U0280_001430"
     CDS             7376..7861
                     /gene="mobB"
                     /locus_tag="U0280_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEM2271381.1"
                     /translation="MATILQIIGFKNSGKTTLLNALIRASRKENYTVSAIKHDAHDFS
                     VDHAGTDSYSFQESGAEAVVIANSRQYAVMEQTGIDLKTAIQKLPESDIVLIEGYKEG
                     PFPKIILIREQAEIELLNNSKAVHKIATHNPALKNEAIFIGEEKALTLFAETLIKEFL
                     K"
     gene            7858..8280
                     /locus_tag="U0280_001431"
     CDS             7858..8280
                     /locus_tag="U0280_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEM2271382.1"
                     /translation="MKYVALQHEKIEIGPLSEKLINKNHGGTNLFVGTIREWTGDIQT
                     EEIRYTSYEEMALKELNKLAAEVETKWGADVVIVHRLGLLQITDVAVVIGVSTPHRAA
                     CYEGSRYIIERLKERVPIWKEEKDVDKTRWGGIDANNS"
     gene            8264..8512
                     /gene="moaD"
                     /locus_tag="U0280_001432"
     CDS             8264..8512
                     /gene="moaD"
                     /locus_tag="U0280_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin converting factor subunit 1"
                     /protein_id="HEM2271383.1"
                     /translation="MLTTVKFFAFLADKTHKTEVKLNLQQCQTVGEVREVISSEFPEI
                     AVDLATCMLAVNMEFQQDQDLLPEEITEIAVIPPVSGG"
     gene            8525..9007
                     /gene="moaC"
                     /locus_tag="U0280_001433"
     CDS             8525..9007
                     /gene="moaC"
                     /locus_tag="U0280_001433"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEM2271384.1"
                     /translation="MEKDDLTHFNDEKRAKMVDVTSKSETKRRAIARATIHMNEETLA
                     RIHAGKIAKGDVLAVAQVAGIMAAKKTSELIPMCHPIMTTKADISFEDDGKTALTITS
                     EVVTVGKTGVEMEALTAVTIAALTIYDMCKAMDKGMRIEKTYLVEKTGGKSGTFKAEA
                     "
     gene            9036..10037
                     /gene="moaA"
                     /locus_tag="U0280_001434"
     CDS             9036..10037
                     /gene="moaA"
                     /locus_tag="U0280_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEM2271385.1"
                     /translation="MQLLKDKFGRVHDYIRISVTDRCNLRCVYCMPEEGLTFLPHEKV
                     LSKDEIVSFMELMVKFGIKKVRITGGEPLLRTDIVEIVRGLGAIPEIEDISITTNAMY
                     LAKKAEALKDAGLTRVNISLDSLHEDRFKAITRGGRLQKVLDGIQKAEEVGLFPIKLN
                     VVLIKGQNDDEITDFLRFTKDKDINIRFIEYMPIGHAGTSWKEKYLPLDTIFEACNEA
                     GYEYEPVDSIRGNGPSENFRIKGAKGTFGVIHPVSAHFCDSCNRLRLTADGYIKACLY
                     WDEEMNIRPFIQDPVKLMQLVQKAIDNKPENHEMALKLQDEVQSNKPTWRRMSQIGG"
     gene            complement(10072..10560)
                     /locus_tag="U0280_001435"
     CDS             complement(10072..10560)
                     /locus_tag="U0280_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaB"
                     /protein_id="HEM2271386.1"
                     /translation="MEQKTFIKVTCSILTISDTRNLDTDTSGQLIQSALETAGHEVIS
                     RIVVPDDVTLIKQKINELAANGSFCLITNGGTGIARRDVTYEALFATIQQEIPGFGEI
                     FRMLSYEEVGSRAMVSRAFAGFSESGLLLFALPGSSNACQLAVQKLIIPELPHLIAER
                     QK"
     gene            complement(10572..11570)
                     /locus_tag="U0280_001436"
     CDS             complement(10572..11570)
                     /locus_tag="U0280_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEM2271387.1"
                     /translation="MERYDRQMRVKNIGKVGQKKLLTKTILIVGVGAIGSYAAEICAR
                     MGFGKLILIDRDYVELSNLQRQSLFTEQDALDKQAKAYAASKALQLINSDIEIEYIVD
                     DANATSLTPYAGAIDYILDCTDNFMTRDFLNQFCFSHQIPWIFTSCAGNYANLMPIIP
                     PDSACLHCLLGDIPQTNAASCDIIGVDGALIPIVAGMQVSLLTQMIINPDFKSNTYYQ
                     LDNWQFSFRSLEVKKRPDCSGCATGKMISEVPFSEQTVALCGRDTVQFRLPNKSNYHE
                     IKQMLTEQKIIYNENPALLSFQYEKFQFVIFKNGRVLLHGTENITEAKKTYHLFFN"
     gene            11702..12256
                     /locus_tag="U0280_001437"
     CDS             11702..12256
                     /locus_tag="U0280_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase"
                     /protein_id="HEM2271388.1"
                     /translation="MKQRIETEKFYPAYPVFVLTYLNEVGEPQMSTGSSSYTLGDSIV
                     IGVSAESNASKHLHAGQKFAVNFPNTEQLGLIEQGGFSSGKRNDKIKVHQIELTKSDS
                     GGVAYIDVCPIVLECTVIQTVSDMDYHTIFAKIDSRLFEKNLVDSDGHFIHEELDLVL
                     FSGDANERKFRQLDTKIETVGGHS"
     gene            complement(12305..12856)
                     /locus_tag="U0280_001438"
     CDS             complement(12305..12856)
                     /locus_tag="U0280_001438"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM2271389.1"
                     /translation="MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINS
                     QDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQA
                     CLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNG
                     IMFYDHINKENPSYLPPDVDVFG"
BASE COUNT         4337 a         2343 c         2577 g         3672 t
ORIGIN      
        1 tctctaatta ttatcggacc tgtttcaaca tatgctagcc aactacttgc aaaaggagca
       61 ttgggacttt attcgcttag tccaatgatt gcaggattct tcctggctgg tatttggcaa
      121 gtggctgtca tgttcggatt acactgggca tttatcccga ttttcattaa taatatttct
      181 gttttagggt acgatccaat taatgctatg ctttattgta ctgtattcgc gcaaactggt
      241 gcggttctgg cagtaatgct taaaacccga aaccaagaat tacgttccct ttctataaca
      301 gcaactattt caggattttt aggaatcacg gaaccagcga tttatggagt aaacttgcca
      361 tataaaaaac catttattat ggcttgcgta ggatcagcat ttggtggggc aattgcaggg
      421 atgagtgctg cgaaaatgtt tggaggcttc gcgtctggtg ggattttcgg tattccgatg
      481 ttcattaatc cagatggaat aggatgggat ttttggggat tcttaatttc tttagtagtg
      541 gcattcagtg tagcgttgat tttaacttat ttctttggat ttaaagataa agttgaggaa
      601 gttgtgattc aaacaggaga aaaagctaca ttagacgaaa ctatttatag cccacttcaa
      661 ggggaaataa ttgcattaaa tgatgtgaaa gatgaagttt tctctgctgg tataatggga
      721 gcaggagtag cgattcttcc agcgagtggc gaaattcgtg ctccatttga tggaacagta
      781 cttagtgttt ttcaaaccaa gcatgcgata gggttgattt ccaaacaagg agtcgagttg
      841 ttaattcatg ttggacttga tacagttaat ctaaatggtc aattttttga cattgaagtg
      901 agcgaatcag aagaaataaa aaagggcgat ttattaggaa gatttgaatt agatgcaatt
      961 aaaaaagctg gctatgatat tacaacgcct attattgtaa ctaatagtgc cacactcgcc
     1021 gatgttatta cagtgaacct tggaaaaagc gtagataata accaaaagat tttagaagca
     1081 aaggcttaat atagaaaggg tgaaaaaaat gttaaaacaa agtgcagaca agcgccggat
     1141 tgagaaaaat gacaaacctt ttttctacct tgcagatact gtttggagtg cgtttacaaa
     1201 tattgattta acagattggg cctactattt aaaagtccga aaagagcagg ggtttaatgt
     1261 actgcaaatc aatattttgc cacaatggga tcgaagtata ctaaaaaaaa tgcaagagcc
     1321 gttcggtata agtgaaggtt ttttcgattt aaaagctaaa aatgaagctt actttaaaca
     1381 tgcagaaaag atgttagaaa tggcagtgaa tcaaggtttt actccagcgc ttgtgttatt
     1441 gtggtgtaat tatattccag agacgtgggg ggcaaaattt ggtacttcac cactgtttcg
     1501 aaaagaagac attaaaccct atacagaaat gatgttggaa catttcgagc aattcgaacc
     1561 aatttatatc attagtgggg acacggattt tccaacggaa actgtagcag cttattattt
     1621 ggaagcttta gaaaccgttt ctaaaaaagc gccacacgca cttaaagttt tgcatatttg
     1681 cggtcgtttg aaagatattc cggaaaatct gcaaacacat ccagcacttg atttgtattt
     1741 ttatcaatct ggacataatt cggagcacca atcaatggcg tatacgttgg cagaacactt
     1801 tagtcagtta gagccaatca agccagttat taattcagaa ccgtgttacg aattaatggg
     1861 atatagtcga caaaaatatg gtcgttttag ccgagaagat gtacgaaaag cagcttggca
     1921 aagtgtctta tctggtgcta tagctggtat ttcttatggg gcacatggta tttggagttg
     1981 gcatgaagaa ggaagtacat ttggatcagc tctaggcgaa ggttttgttt ctccatttaa
     2041 ttggcgacaa gcacttcatt ttgaaggagc tacagattat gcatttctaa aatcctttat
     2101 tttggcaaat gacttaacaa cactggcacc aataaattta gttttaaatc aaactccaga
     2161 aattcgagca gcggagaccg aaaaagtagt tatcatttat gtgccatcaa atgtcccaat
     2221 ttatttgaaa gggcaatttg cttctttgga tgactacgcg attgatttgg agcaaggtaa
     2281 aaaggtcagc cttacaaaaa tacttcatga agaaaaaaca gaaattcaga tgactccttt
     2341 tttaaaagat agtttatatg taattcacaa ataaattcca atttctttct ggaaaaaata
     2401 attttgttta ccaataaaaa ctaaagcgag gccactattt cagcgtggcc tcgcttttgg
     2461 cttttacaga agtttgttct aatttttgct taacaaattt aagttgtgcg acgattataa
     2521 tactaataat aacaagtaaa taccaactcg taatttttga aacgtgcacc ggacgccatg
     2581 caatcagctg gtctggataa gaccaagctc cgtaaaaact agcaatgttc tccgcaagat
     2641 aaatgaaaaa ggcgatgcat aaaaaggaaa aagataaagg cattttgagt tgagtcgaac
     2701 taactttgaa ataaacatat gtttttcgga ataaaacgag aactaaaaca atcaaaatcc
     2761 accgaaaatc cattataaaa tgatgcgtga aaaaattagc gtaaattgtt atgcaaaggc
     2821 tacttactaa ccagatattt ggccaatttg tcattttaag atcaaatctt ttccaagcct
     2881 gacaaatata actcgccaca cttgaataca taaaaccgct ataaagcggc acaccgaaaa
     2941 gtttcattaa accaggctct ggataactcc atgaccccat atgtacttta tagatttcaa
     3001 gtccaagtcc aataagatga aaaaccataa ttaccttaag ttcatcccat gtttctaaac
     3061 cgaattttat aagtagcact tgcgttccaa gacaaataat caaaagtaag tcgtagcgcg
     3121 caataaaagg aatatcaatc aattttgtaa gtgcaagcga aataaagata atgcctggaa
     3181 aaatacaaca aagtgcttgc ttccaagtaa acacccaaag taagcggaaa aattgcataa
     3241 aaaaacctct tctcatgatt ttctctagtt taccaaaaaa aactaaagaa aaggacaaga
     3301 aaaggttaaa aaagttcatt ttgatgattg atatttctaa atggggcatc ttcttcaaat
     3361 gctaaaggtt tggtatggag tttttcgagt aaagctctga cacgatgttg ctcgtcttgt
     3421 agtaagtgat gtagcacttc tcgtgagtag ggaatattgg caaccaaata gtgatttgct
     3481 tgcgctgttt tagcaaaatg attaggataa tcagccagtc gtccaatttc ttttggagtc
     3541 aaaaaaggca tatcgacagg aagtactagg aaattagctt tctgataagc atttgcttct
     3601 accatcaccg cataaattcc tccaagcggt ccaaattcac tgaatgcggt ttgatctgga
     3661 atgatttcaa tgcttggttc tgcatcaaaa agagccacga gttttgaatg attttcatga
     3721 tttgccgata caaataccat atcgcaaagc ggcagcaact tactaaccgt tagctcgacc
     3781 cacgtttttc cagttgcctc atcctgaaaa aacgcttttg gttccccaaa acggcttgag
     3841 cgaccaccgg ctaatacaat gccgacatta actttttcgt ttttcaaggc gtccctctcg
     3901 cataactaaa atttcttcgg tcatcatttc tgcttccgag gcataatgcg tgacaaaaat
     3961 aacggggata tggaagtctt tggccatttg accaactaat ttcatacaaa tcaaacgcgt
     4021 ttcttcatct aaaccattga aaggttcatc cagtaaaagt aattttggct ccgtaatcat
     4081 tgctcgagtc atcgcaacac gttgtttctc gccaccagat aatttctgaa cggaagaata
     4141 aagcaggtga gaaatttgta gataatcact catttttcgt acttgttgct gaatttctgc
     4201 ttgttctttt ttcttctttt tcttcacttt caagccaaaa gcgatatttt catacacatt
     4261 catatttggg aatagagcta aattctgaaa taaataacct actttgcgct ctgttacagg
     4321 aagatgtaac gaaatattgg aatcatccca cggagtcccg tcaaattcaa taatgccgcc
     4381 gtcaatactt ttcaagccac taacgcactg aaatagagtt gacttgcctg aaccacttgc
     4441 gcccatcatc gcggttactg gcttttcaaa cgtataatca atatttaaat catgaaaagg
     4501 aagttttttg tgaaattgta atcgtagcat aattacatcc ccctcgttaa attactctgg
     4561 cgtatagtta atacatgaat gacaagtaaa gcaaacacgc cgataatgac gttaattaat
     4621 ccaagataaa tcgcagtacg catgtctcct tgttgcacca taaaatagat gcttgaagca
     4681 atggtatccg tcttgccttc aatataacca gccaccatca aacttgcgcc aaattcaccc
     4741 atcgcccgac aaaaactaag caaaacccct gctaaaattg gttgccagca attcggtaaa
     4801 ataatttttg tgaaaatttg ttttttattc gctgaaagag tctctgctgc ccatacaagt
     4861 tcgtgatcaa ttgataaaaa tgctgatttc aaaccttgat acataatcgg taaaataata
     4921 attgtcgttg caacaattgc gccgctaagg gaaaaaataa agctgaaatc aaaagtatcc
     4981 caaagcacac caccaataaa atcattgcgg ccgaggacgt tcagtaaaac taaaccaacc
     5041 acagttggcg gtaaaacaag cggaagtaaa attaaaatct ccactggtaa ctggaaacgt
     5101 gattttcgac cggcaaaata ataactcagt ggtaacatcg tcataaacgc gagaaacgta
     5161 gaaattgtag ctacaagtaa tgtatgccaa acagatgtaa acataaatct cctcctgaac
     5221 cctctagtac ttctattatt atcgttctct ctggtataaa atgtcaaact taagtacaat
     5281 gtaactaaat aaaaaagggg gatgaagaat gaaaaaaata gcacttatta tatgttgtgg
     5341 attattacta cttctcggag cttgcgagga tacacctgag aaagccaaaa caacgactat
     5401 acatatttca gctgcagcaa gtttaaaaga tacgatagat gacgtaaagc cactttttga
     5461 aaaagctaat ccaacgatta aattatcctt tgattttggt ggttctgggc aaattcgcga
     5521 acgtgtcgaa agcggtgcac caattgacgg cgtcctttta gcgagtaaaa aagatgcgga
     5581 tacactgatt aagcaaaatt tagcagaaaa aacgaaagaa tttgcgggaa atgaactcgt
     5641 tctaattgaa cctaaaaacg tggatcagaa ggcagggatg aacttagaac aattacttaa
     5701 tgatgcatcc aaaatcgcca tcggggatcc agaatcagta ccagcaggcg cctatgccaa
     5761 acaaacgctc gaaaacttaa atctatataa tgcagaaaaa gcaaaactcg ttcttgccac
     5821 cgatgttcgt caagtcttat cctatgtgga agctggaaat gcagatgcag gcttcgttta
     5881 ccagacagat gctctattaa gcaaaaaagt acaagtgaag gcaaaaatcg atgagaaact
     5941 ccatgatcca attgcttact atagcgcaca agtcagtgac tcggataaaa aagaagaaac
     6001 cgcaacattc cttgatttta tgaatacatc agaagcgcaa aaaatactgg aaaaatacgg
     6061 attcaaagca gcaaactaag gagaagtcgc tttacttttt aaaacaagca aactcctgta
     6121 tattggtact aaagaaaacg catacattat ttaggaaagg gaagtgcgcc cagatgattg
     6181 aaaaaagaaa taccattaga atggaacaag cgagagagat attatgtaat caaataacgc
     6241 atcttccagt agaaaagaaa tgtgtgacag aggcgttaaa ccaagtacta caagaaccta
     6301 ttttcgcgcc gtttcctgct ccctatttta ggcgctctgg ttatgatggc tttgcgatta
     6361 ctgaggagga tgacgagaat tatcctatca ctttgcacgt tgtagcagaa gttccgtgtg
     6421 gggaaacata cgataaaccg ctaaaacctg gtgaaaccgt ccgaataatg actggagcaa
     6481 aagtgccaga taatgcctcg aaaattatta tgctcgaaca atcaagagaa gcggataacg
     6541 agaatgaaat cgtacttata aatacacaaa aatctactaa cattacagaa atcggtacgg
     6601 agttcgccaa aggagatttg ctgttagatc gtggacacat tttaaatgcc ggttcgataa
     6661 gtttactgtc atcctttgga attcaagaag tacaagtcat cagaaaacca aaagtagcta
     6721 ttttatccac aggtagtgaa cttgtttctg ctggaaatcc acttccagat ggcaaaattt
     6781 ttaatagtaa tcaaccatta ctggagaatt tactaaaagt acatcatgcc gagatttgcg
     6841 cggccgaaca attacctgat aattatgagg atacgaaaaa gcgattacta gaattgactc
     6901 aaatagcaga cttgataatc actacaggtg gtgtttctgt aggggacttt gactatatgg
     6961 ctgatattgc aaaaaaagag gcagaattac tttttaataa aattcaaatg cgaccgggca
     7021 gtccgacaac agggatgtgg ttggacaaca cgcttatcat cgcactttct ggtaatccag
     7081 gggcatgctt tacaggtttt tacttattcg tagaaccggt attagctacc ttaatgggga
     7141 aagatacaac tgagacgacc aaagtccgtg caaaaatggc gagcgattac actaaaaata
     7201 atggctatga tcgtttttta cgaggaacct atcgtttgtc tgacgaaggg gaatatttgg
     7261 ttgagttggt aggaagcgat atgtcgagtg cgctaggaaa cctccattta accacctgtt
     7321 tattcaaaat ccctcgcggt aaagttggaa aattaaaagg agaagaggtc gaagcatggc
     7381 tactatcctc caaataatcg gctttaaaaa tagcgggaag acaactttac taaatgcact
     7441 aattcgagct agtcggaagg aaaactacac agtatctgcc atcaaacatg atgcacatga
     7501 tttttctgta gatcacgcgg gaacggattc ctactcgttt caagaaagtg gtgcagaggc
     7561 tgttgttatt gcgaattcga gacaatatgc tgtgatggaa caaaccggca tcgatttaaa
     7621 aacagccatt caaaagttac cagaatcaga tatcgttctt atagaaggct acaaagaagg
     7681 tccttttcct aaaattattt taattcgcga acaggcggaa atcgaacttt taaacaatag
     7741 taaagctgtc cataaaattg cgacgcataa tccagcgtta aaaaatgaag ctattttcat
     7801 cggcgaagaa aaagctttaa ccctttttgc agaaacgtta atcaaggagt ttttaaaatg
     7861 aaatatgtag ctttgcaaca tgaaaaaatc gaaataggac cactttctga aaaactaatc
     7921 aataaaaatc acggtgggac taatcttttt gttggtacaa ttcgagaatg gacgggtgat
     7981 attcaaacag aagaaattcg ttacacatcg tacgaggaaa tggcgctcaa agaactaaat
     8041 aaattagcag cagaagtaga aacaaagtgg ggggcggatg ttgtcatcgt ccaccgacta
     8101 ggacttttac aaataacaga tgtcgctgtg gtcatcggtg tatcaacacc acacagagcc
     8161 gcttgctacg agggatccag atatattatt gaacgtttaa aagaacgggt acctatatgg
     8221 aaagaagaaa aagatgtcga taaaacaagg tggggtggca tagatgctaa caacagttaa
     8281 atttttcgct tttttagctg ataagacaca taaaacggaa gtgaaattga atttgcagca
     8341 atgccagaca gttggcgagg ttcgagaagt tattagtagt gaatttcctg aaatagccgt
     8401 tgatttggca acatgtatgc tagctgtgaa tatggaattt caacaagatc aagacctttt
     8461 accagaagaa ataaccgaaa tcgcagtcat tccgccagta agcggtggat aaggagggta
     8521 atagatggaa aaagatgatt taacgcattt taacgatgaa aaacgcgcaa aaatggtaga
     8581 tgttacgagc aaatctgaaa caaaacgccg tgcaatcgct agagctacga tacatatgaa
     8641 tgaagaaacc ttagcgcgta ttcatgctgg taaaattgct aaaggagatg ttttggccgt
     8701 tgcgcaagtt gctggaatca tggcggctaa aaaaacaagc gaactaattc caatgtgcca
     8761 tccgattatg acgacaaaag ctgatatttc ttttgaagat gacggtaaga ccgcgctaac
     8821 tatcacgtcc gaagtcgtaa ccgttggaaa gacgggcgtc gaaatggagg cgctcacggc
     8881 agtaaccatt gcagcattaa ccatttatga catgtgcaaa gcaatggata aaggcatgcg
     8941 gattgaaaaa acgtatttag tggaaaaaac aggtggaaaa agcgggacat ttaaagcaga
     9001 agcgtaacta ttttgtagga taggagtttt gttttatgca attattaaag gataaatttg
     9061 ggcgggtaca cgattatatt cgtatttcag taacagatcg gtgtaattta aggtgtgtgt
     9121 attgtatgcc cgaagaaggc ctgacatttt tgcctcatga aaaagtacta tccaaagatg
     9181 aaattgtcag ctttatggaa ttaatggtga aattcggcat caaaaaagtc cgcatcactg
     9241 gcggagagcc gttactaaga actgatatag tggaaattgt tcgcgggctg ggagcaattc
     9301 ctgaaataga ggatatttcg attacaacga atgctatgta tttggcaaaa aaagcagaag
     9361 cactgaagga tgcggggctc acacgtgtga atatcagctt agattctctt catgaagatc
     9421 gttttaaagc aattacacga ggtggccgtt tgcaaaaagt acttgatggt attcaaaaag
     9481 cagaagaagt tggactgttc ccaattaagc ttaatgtcgt actaattaaa ggacaaaacg
     9541 atgacgaaat aactgatttc cttcgattta caaaagataa agatattaat attcgtttca
     9601 ttgaatacat gccaattggt catgctggta cgagttggaa agaaaaatat ttgccgcttg
     9661 atacaatttt tgaagcttgt aatgaagctg gttatgagta tgaaccagtg gactcgattc
     9721 gtggaaatgg cccctccgaa aatttccgta taaaaggagc gaaagggacg tttggtgtga
     9781 ttcacccggt tagcgctcat ttttgtgata gttgcaaccg actcagactt actgcagatg
     9841 gctatattaa agcatgttta tactgggatg aagaaatgaa tatccgccca tttatccaag
     9901 atccagtgaa attaatgcaa ttggtgcaaa aagcaattga taataagcct gaaaatcatg
     9961 aaatggcatt aaaattacaa gatgaagtac aatctaataa accaacttgg cggcgtatga
    10021 gtcaaattgg aggataaata aaacatccgg tcacatgtgt ggtcggatgt tttatttttg
    10081 tcgttctgct attaaatgag gtaattctgg gataatcaat ttttgaacag cgagctggca
    10141 agcgttactt gatccaggca acgcaaaaag cagtaagccg ctttctgaaa agccagcgaa
    10201 tgcacgagac accatggcgc gactaccaac ttcttcgtaa ctgagcatcc tgaaaatttc
    10261 accaaaccca gggatttctt gctgaatcgt tgcgaataat gcttcatacg taacatcacg
    10321 cctagcaata ccggtaccac catttgtgat aaggcaaaag gacccattag ctgctaactc
    10381 gtttattttt tgcttaatga gcgtaacatc atcaggcacg acaatccgcg aaataacctc
    10441 atgcccagca gtttctaagg cagattgaat cagttgacca ctagtatccg tatccaaatt
    10501 ccttgtatca ctaatcgtta aaatactaca agttacctta ataaatgttt tttgttccat
    10561 aactgcctcc tttaattgaa aaataagtga tatgtttttt tcgcttctgt tatattttct
    10621 gtcccatgaa gtaacacgcg tccatttttg aaaataacaa attgaaattt ttcgtattgg
    10681 aaactgagta aagcgggatt ttcattataa ataatttttt gttccgtcag catttgttta
    10741 atttcgtgat aattgctttt atttggcaga cgaaattgta ctgtatctct tccgcaaaga
    10801 gcgactgttt gctcggaaaa aggcacttct gaaatcattt ttccagttgc gcaaccagag
    10861 caatcggggc gtttcttgac ttcaagagac cggaaagaaa attgccaatt atctagttga
    10921 tagtaggtat ttgatttgaa atcaggattg attatcattt gtgtaagtaa agaaacttgc
    10981 atgcccgcga caatcggaat cagcgcacca tccacaccga taatatcgca acttgctgcg
    11041 ttggtttggg gaatatcacc aagtaaacag tgtaaacaag cagagtcggg tggaataatt
    11101 ggcatgagat tcgcataatt tccagcacac gaggtgaaaa tccatggaat ttgatggctg
    11161 aaacaaaatt gatttaaaaa gtcgcgcgtc ataaaattat ctgtacaatc aagtatgtaa
    11221 tcaattgctc cggcataagg cgttaaactt gttgcgttcg catcatcaac tatatattcg
    11281 atttcaatat cgctattaat taattgtaac gctttggatg ccgcatacgc ttttgcttgt
    11341 ttgtctaatg catcttgttc cgtgaaaagc gattggcgct gcaagttact tagctccaca
    11401 tagtcacgat caattaaaat taactttcca aagcccattc gtgcacaaat ttctgcggca
    11461 tatgaaccaa tcgcgccaac gccaacaatc aaaatcgttt tcgtgagtaa ctttttttga
    11521 ccaacttttc cgatgttctt aacacgcatc tgtctatcat aacgttccaa ttttccacct
    11581 tctttccaat cttattttac cagaaaaaca cataaagcgc ttacttgtaa ggttttaatt
    11641 tattcttgaa atcttagtat ggcatcattt ataatgaaag aaaaaactag aggtgctaac
    11701 tttgaaacag cgcatagaaa cagaaaaatt ttatccagct tatccagtct ttgtattaac
    11761 gtatttgaat gaggttggag aaccgcaaat gtcaacggga tcatcatcgt acacattagg
    11821 agatagtatt gttataggcg tgtcagcaga aagtaatgcc agcaaacact tgcatgctgg
    11881 ccaaaaattt gcagtaaatt ttccaaacac ggagcagtta ggattgattg agcaaggggg
    11941 attctcgtca ggaaagcgta acgataaaat aaaagttcat caaatagaat taaccaaaag
    12001 tgatagtggg ggagtagctt acatagatgt gtgtccgatt gttctcgaat gcaccgtgat
    12061 tcaaacagtt tctgacatgg actatcatac tatctttgct aaaattgact cgcgattatt
    12121 tgaaaaaaat ttagtggatt cagatggtca ttttattcac gaagaacttg atttagtgct
    12181 attctcaggc gatgcaaatg aacgtaaatt cagacagctt gatacaaaaa tagaaacagt
    12241 tggtggtcac tcataaagtc aaaaatcccc gcaggatctt aattcctgcg gggatttatt
    12301 caatttaacc aaacacatcc acatctggtg gcaagtatga tggattttct ttattaatat
    12361 gatcataaaa cataataccg ttcaaatgat cgatttcgtg ttgaataaca atcgctggat
    12421 aacctttgaa acgtaattta agcggtgtac cattttcgtc aaaggcatca atggttacac
    12481 gttcacttcg gaccacatac cctggaactt ctcggtcaac agaaagacaa ccttcaccac
    12541 cagaaagaca agcttgctga acagaatggc tacgaatttt tggattataa agcacataac
    12601 tataaagacg atctttttca tcatgtacat gaatagctag gaaacgttta gtcacagcga
    12661 gttgtggagc tgcaattcca acgccaccac gcaacccata tttttctgct aactcttcat
    12721 cttgactgtt aatcaggaat tcgagcatct cgcgtcctaa ttttttttct tcatctgaaa
    12781 gcgggaaagt cacttctgtc gcaacttctc taagtgctgg atgaccttct cgtacaatat
    12841 cgtccattgt aagcatgatt tgattctctc ctgttcttta ataacttatc tttattttaa
    12901 caaaagaacg aaaaaaaagg aatgaaaga
//
LOCUS       DASDXX010000065        12785 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.065, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000065 DASDXX010000000
VERSION     DASDXX010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12785
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.065"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..608
                     /locus_tag="U0280_001439"
     CDS             <1..608
                     /locus_tag="U0280_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271390.1"
                     /translation="KLKVPKHTDLVNTASQRNNHVYLIVEGFVSISMNPQSSSIYTVL
                     GKGSFVNYYSLFQGNVDDFLFTTISPCTIYKYSFKDLEYFLSMFPENFGFQFFIMRDL
                     ARHAFFKSLFAETSSSDKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSK
                     SSFYKQLTLLKDQGKIWKNGREWVVRNKELYDYVKARQFVD"
     gene            complement(752..1303)
                     /gene="nrdG"
                     /locus_tag="U0280_001440"
     CDS             complement(752..1303)
                     /gene="nrdG"
                     /locus_tag="U0280_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HEM2271391.1"
                     /translation="MNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLYVSGCPF
                     HCEGCYNKAAQSFKYGKPYTKELEDDILKDIGHESVQGLTLLGGEPFLNTATCLSVVK
                     RIRATYGETKDIWSWTGYTWDEMMQETADKLELLSLIDVLVDGRFEQKLFDPNLAFRG
                     SSNQRIIDVQKSLAAGEVVLYEL"
     gene            complement(1296..3446)
                     /gene="nrdD"
                     /locus_tag="U0280_001441"
     CDS             complement(1296..3446)
                     /gene="nrdD"
                     /locus_tag="U0280_001441"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEM2271392.1"
                     /translation="MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETF
                     LEEILLEVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENIT
                     DMHKSVEKLLQKDKTVVNENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHL
                     KGEIHFHDLDYSPYHAMTNCCLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIA
                     NVASSQYGGCSVDRIDEVLSVYARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDA
                     MQSLEYEINTLYTSNGQTPFVTLGFGLGEDWFAREIQKAILKVRIGGVGKDKHTAIFP
                     KLVFSIRRGTNLNAEDPNYDIKQLALECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRS
                     FLPAWENENGEHVNAGRNNLGVVTLNIPRIAIQSGGDKERFWEIFHERMKTVKDALLF
                     RLNRVRQARPENAPILYKYGAFGKRLQDGENVDQLFNKERSTISIGYIGLYEAATVFY
                     GGEWEGDKEAKNFTLDILKELKGYADNWKDEYGYWFSVYSTPSESLTDRFNRLDKEKY
                     GVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEKDYPEFCSGGFIHYCEYPKMVHNTK
                     ALEAVWDYSYDRVAYLGTNTPIDKCYECNFEGEFVPTEEGFKCPSCGNTDPEKADVVK
                     RTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE"
     gene            3737..4837
                     /gene="ugpC"
                     /locus_tag="U0280_001442"
     CDS             3737..4837
                     /gene="ugpC"
                     /locus_tag="U0280_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEM2271393.1"
                     /translation="MAQLSLEHIYKIYDNKVTAVSDFNLEIDDKEFIVFVGPSGCGKS
                     TTLRMIAGLEEISKGELSIDGKVMNNVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLK
                     LRKMPKDEIKKRVEHAANILGLTEYLKRKPSALSGGQRQRVALGRAIVRDAKVFLMDE
                     PLSNLDAKLRVQMRAEITKLHQQLDTTMIYVTHDQTEAMTMATRIVIMKDGVIQQVGS
                     PKQVYDHPVNMFVAGFIGSPAMNFFKGRLEGSNFIGDDFTIEVPEGKLKLLKDRGFDG
                     KDIVFGIRPEDIHDEPIVIEANPGYTFKATTIVAELTGAEFMLHSRVGTHEFVARVDA
                     RSEHQPNEVLTLAFEMSKSHFFDPETEDNLTD"
     gene            complement(4875..5846)
                     /locus_tag="U0280_001443"
     CDS             complement(4875..5846)
                     /locus_tag="U0280_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2271394.1"
                     /translation="MGNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSLEKGQAFA
                     SQYGIENVYDDFDKMLADPAIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSE
                     ELNEINVLAKEKGLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDP
                     KNRFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNK
                     EEELAVVSLSFRAKMPKRGVIACEEGFITVDEYPRASRATVTHTATGKVEEIEVGETS
                     KALEYEIIAMEESIATGENTTYQLTNDVITIMSDVRTQWGIKFPFEK"
     gene            5962..6783
                     /locus_tag="U0280_001444"
     CDS             5962..6783
                     /locus_tag="U0280_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2271395.1"
                     /translation="MTKKYLICSDIDGTLLRQDQTVSIKTRDLIQTLEKDGHIFSIST
                     GRMYRSAREVGFQVSNSGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLP
                     LFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIV
                     VAEDDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRER
                     IITFGDGENDIGMLQYAGTGVAMANASDNVKAAADHLTDTNEADGVYKFLKEFIS"
     gene            6800..7642
                     /locus_tag="U0280_001445"
     CDS             6800..7642
                     /locus_tag="U0280_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2271396.1"
                     /translation="MKKGILNVLLVFALIAGLSVPSSMQVEAAAPTIKVHFIDVGQGD
                     AIYIKAPSGEDILIDAGNKGKGKTVVNYLKKLKVKDIEIMIASHSDADNIGGLPEVMN
                     NIKVKSLYAPKSTNTTAAYKNFVNTAKKKKLTIKTAKAGVKLPVKGVNAQFVGPVKTY
                     GKTDRNNWSAVLHVAYKKNTFLFTGDAQTKAENDMIKAKKTLRADVLKVSTQGSKAAT
                     SKAFVNVVKPKYAIISVGKNGYGHPTSQTVNTLTKAKAKVYRTDRNKTVVVTGNGSSY
                     SIGK"
     gene            7900..8562
                     /locus_tag="U0280_001446"
     CDS             7900..8562
                     /locus_tag="U0280_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271397.1"
                     /translation="MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVY
                     LLKSGILAGYIDFDNDKIYSIFTSNFFMGYYTIFDNASLVLTYQTLTECELIIYKKKD
                     IEYSLSLFPENFSFQYTIMRTIAKHGYYKSLLQYRDKKDQLAFVFEMLVKILDIPVED
                     GVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINMEALSEKNNS
                     IN"
     gene            complement(8599..9102)
                     /locus_tag="U0280_001447"
     CDS             complement(8599..9102)
                     /locus_tag="U0280_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271398.1"
                     /translation="MKRNYHVKFLNEKDVELAEAVCAASEDYYLMEQDKPASKSDALK
                     IITEIPNGKTRFDKFVLAVLDENEKPIGLVDIVSDYPRKGRWFIGLLLLTPDARHNGL
                     GKVLHQTIKEWANDGGADSLALGVLAENEKGRGFFEYLGYTKEETKQANYGGKEQEVS
                     IFTLAIK"
     gene            9238..10050
                     /gene="yidA"
                     /locus_tag="U0280_001448"
     CDS             9238..10050
                     /gene="yidA"
                     /locus_tag="U0280_001448"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM2271399.1"
                     /translation="MYKLIAIDIDGTLLTDDHKVTDEVKEAIRQAKLKGVKVVLCTGR
                     PLVGVENYLTDLELREEGDYVISFNGAFVQDTFTKEVISHLTLGIDDLKEIYQVSLDS
                     NLHMHFFDDKALYTPNREIGKYTIVEAYLTGSQLIYKEIENVPEDFIMSKAMFIEEAP
                     ELEVGIAKIPESFREKYHLVRSTPFYLEILNRDASKGNAVKELSEKLGIKQSEVICIG
                     DQENDVTMLEFAGLGIAMGNAPERIKQLADYTTASNNDSGVAKAIQKFVLDK"
     gene            10170..11606
                     /locus_tag="U0280_001449"
     CDS             10170..11606
                     /locus_tag="U0280_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2271400.1"
                     /translation="MEHQKRSPFPKDFLWGSASAAYQIEGAWDADGKGKSVWDEYVRI
                     PGTTFKGTNGDVAVDHYHRYKEDVKLMADAGLKAYRFSIAWTRIFPNGKGEVNEAGLK
                     FYDNLIDELLKYDIEPLVTLYHWDIPQALFDEYGGWESRQVIEDFTNYSTTLFKRYGD
                     RVKYWVSLNEQNIFVGMGYGQALHPPKVSDPKRMYAVNHIANLANASVIKAFHEIVPD
                     GKIGPSFAYTPHYPIDTDPKNVQAADDAEELNSYFWMDMYAFGRYPKAVWKYLEENDI
                     APVIEDGDMELLASAKPDFMGVNYYQSATVAYNPLDGVGQNNEMNFTGKKGSTKETGV
                     PGVYKKVVNPFVKTTNWDWTIDPKGLQIALRRINSRYALPILITENGLGEFDKLVDGE
                     VNDDYRIDYLSAHATAIRDAISDGVDMLGYCTWSFTDLLSWLNGYQKRYGFVYVDRDV
                     EDDAPMTRIPKKSYYWYKQVIETNGADL"
     gene            11610..12233
                     /locus_tag="U0280_001450"
     CDS             11610..12233
                     /locus_tag="U0280_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2271401.1"
                     /translation="MADLQDWLARIQAKITALKEKDPDLNLFGSESHAYKLNQPLSNQ
                     TLTEFENEHQITLPQDYRAFLEQIGNGGMGPYYGLETLADGLCASLDYKDEKYGVQTL
                     SEPFPHTDDWTAPGYKEGMSDEDYDAWQELCFQDKEVFGLLRIANFGCGVSINLVVNG
                     PSYGEIWVDDRNNDNGVYPDFYFGNEERLGFLEWYELWLDKSIEEIE"
     gene            12367..>12785
                     /locus_tag="U0280_001451"
     CDS             12367..>12785
                     /locus_tag="U0280_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2271402.1"
                     /translation="MKKFILASLACTTLISFSPLVGQVEVSAATTNIATAPEKNLQEA
                     PPATVDQIFPDDALAFKVAQELGVSEDTVVTQEQLDTIETMVYVDFGVEDLTGMEYLH
                     NLKFVDLSQNKISNLENLANLTELETVSLNYNQITDIT"
BASE COUNT         3956 a         2428 c         2395 g         4006 t
ORIGIN      
        1 aaaaattaaa agttccaaaa catacagatt tagtaaatac tgcctcgcaa agaaataacc
       61 atgtctattt aattgtagaa ggcttcgtgt ctatttctat gaatccgcaa tctagtagta
      121 tttatacagt cttaggtaaa ggctcttttg taaattacta tagtttgttc caaggaaatg
      181 tagatgactt tctgtttaca accatttccc cgtgcactat ttacaaatat tcttttaaag
      241 atttagagta ctttctttcg atgtttccag agaattttgg ttttcaattt ttcattatgc
      301 gagacttggc gcgacatgca ttcttcaaaa gccttttcgc cgagactagt tcttctgata
      361 aattagagct ttctttttct aatatgggca aattacacgg aacgctttat gaaaaagata
      421 gtgttatttt accgaaagaa atgcgaacta gtactatcgc tgcttatagc aatctatcga
      481 aaagcagttt ttacaaacaa ttaacccttt taaaagacca aggtaagatt tggaaaaatg
      541 gaagagaatg ggttgttaga aataaggaat tgtacgatta tgtgaaagct agacaatttg
      601 ttgattaaaa aacgccacct gagttatggg tggcgttttt tatttggatt agtactatca
      661 tcattcttac attgttgatt ctatgcccgc acatatattc aataagcatc caaagcaaaa
      721 agaataagcc ctccatcaaa gagggcatat ttcacaactc atacaaaacc acttcaccag
      781 cagcaagtga tttctgcaca tcaataattc tttggttgct ggaaccgcgg aatgctaggt
      841 tggggtcgaa tagtttttgt tcgaagcggc cgtctaccag aacatctatt aaggatagaa
      901 gttctagttt gtcggcggtt tcttgcatca tttcgtccca ggtgtagccg gtccatgacc
      961 agatatcttt tgtttcgccg tatgttgcgc ggattcgttt cacgacagat aggcatgtgg
     1021 cggtgtttag aaatggttct ccgccaagta aagtgaggcc ttggacgctt tcatgtccga
     1081 tgtcttttag gatatcgtct tctaattctt tcgtgtaagg tttgccgtat ttaaatgatt
     1141 gcgcagcctt gttgtaacag ccttcgcagt ggaaaggaca tccagataca tatagactgc
     1201 accggacgcc ctctccgtcg acaaagttga atgccttata gtcggcgata taccctctgg
     1261 ataattcatt cgacttccat tcacacggtt ttggattatt cacctaagtt ctccatatgt
     1321 ttcacgcgat tgctaatttc tacgtgacgt ccatgaacca ttggacgttt cattgggttg
     1381 cctaaatagc cacaagtacg ttttacaaca tctgcttttt cggggtcggt gttgccacag
     1441 cttgggcatt tgaagccttc ttctgtagga acaaattcac cttcaaaatt acattcgtaa
     1501 catttatcga ttggtgtatt tgtaccaagg taagctacac gatcatagga gtaatcccat
     1561 acagcctcaa gtgctttcgt attgtgaacc atttttggat attcacaata atgaatgaat
     1621 ccgccagagc aaaattctgg ataatctttt tcaaaatcaa ttttttcaaa tggggtaatt
     1681 tttttacgaa catcatagtg gaaagagttt tggtagtagt ctttatctgt gatgtcttta
     1741 attacaccat atttttcttt gtctaaacgg ttaaaacggt cagttaagct ttcacttgga
     1801 gtcgaatata cgctaaacca gtagccatat tcatctttcc agttgtccgc ataacctttt
     1861 agttctttca agatatcaag cgtgaagttt tttgcttctt tgtcgccttc ccattccccg
     1921 ccgtaaaata cagtcgctgc ttcataaaga ccgatatagc cgatagagat agtagaacgt
     1981 tctttattga aaagttgatc aacattttcg ccatcttgta gtcgtttgcc aaatgctccg
     2041 tatttatata aaattggtgc attttctgga cgtgcttgac gtacgcggtt taaacggaaa
     2101 agtagcgcat ctttgacagt tttcatgcgt tcgtggaaaa tttcccagaa acgttctttg
     2161 tccccaccac tttggatagc gatacgtgga atgttaagtg ttacaacacc aagattgttt
     2221 cttcccgcgt tcacgtgttc gccgttttcg ttttcccaag ctggcaagaa cgaacgacag
     2281 cccattggta ctttgaaatc gcctgttaag cgaacgagtg aatcgtagtt gagtacatct
     2341 ggatacatcc gtttcgagga acactctagc gccaattgtt taatgtcata attaggatct
     2401 tctgcattta aattagttcc acggcgaatc gaaaatacta atttcgggaa aatagccgtg
     2461 tgtttatctt taccaacccc accaatacgc acttttagga tggctttttg aatttcacgg
     2521 gcaaaccaat cttcaccaag accgaagcct agtgttacga acggtgtttg gccgttactt
     2581 gtatataatg tgttgatttc gtattctaag ctttgcatcg catcgtaaat atctttgcgt
     2641 gttttctccg ctgcatagcc ttcttgtttt tctggaacga cccattccat cgcatctttt
     2701 ttatgttttt caaagttcaa acgcgcgtaa acggataaaa cttcatcaat acggtcaacc
     2761 gaacaaccgc cgtactgtga acttgctacg tttgcgatta tttgagcaat ttgtgcggta
     2821 gcagtttgga tagatttcgg gctttctacg ttggcattac caatcgtaaa tccttttgac
     2881 agcattcctt cgatgtcgat taaacaacag ttggtcatcg catggtatgg gctgtaatct
     2941 aaatcgtgaa aatgaatttc cccttttaaa tgagcgttgg atacgtgttt tggtagcatg
     3001 tattttaatg cgtaactttt tgctacggct cctgctgtca aatcgcgttg cgtattaaag
     3061 acagtcgcgt ctttgttggc attttcgttt actactgttt tgtctttttg tagtagcttt
     3121 tctacgcttt tgtgcatatc tgtgatgttt tcacgctcat ggtcgcgatc atggcggtac
     3181 tctatgtaag ccctcgctac atcaggatac gtcgatttca ttaaagtatt ttcgacgcaa
     3241 tgctggattt catcgatggt catatctgcc ttgttaggta attcacttac aacctcaagc
     3301 aaaatctctt ctaagaaagt ctcgtcctct aaattaattg ctttcataga tgcttcaacg
     3361 gcattacgaa ttttaattaa atcaaagttt gctttacggc cgtccctttt tattaccatt
     3421 tgttcattaa gttgttccac gtacatgata atcccccact aactatatat tgtgtctgct
     3481 ttaataatat aacacaagat gaagttttat tgtaatgata tctgaggaat ttccggaatt
     3541 gggactaaag aattaagcgc tgtgaaaaat ctttcacata aaaggtcttt tgtcccttta
     3601 cttcttttta tttttttgct acttatgcaa gttgcccaac agatgaattt tttctttgtg
     3661 caaattgcca tagtttttgt aaagcgtttt catatacaat gaacacaagt taaaaaatag
     3721 aaagaggcga agaaagttgg cacaattatc actagaacat atttataaaa tttatgataa
     3781 caaagtaact gcggtatctg actttaattt agaaatcgat gacaaagaat tcatcgtttt
     3841 tgtaggtcca tctggttgtg gtaaatctac aactttacgt atgattgctg gactagaaga
     3901 aatttcaaaa ggcgaactat ctattgatgg taaagtaatg aacaatgttg cgccaaaaga
     3961 ccgtgacatc gcaatggtat tccaaaacta cgcattatat ccgcatatga ctgtatatga
     4021 taatatggca ttcggtttaa aacttcgtaa aatgccaaaa gacgaaatta aaaaacgtgt
     4081 tgagcatgca gcaaatattc ttggcttaac tgaatactta aaacgtaaac caagtgcact
     4141 ttccggtggt caacgtcaac gtgttgctct aggtcgtgca atcgttcgtg acgcaaaagt
     4201 cttcctaatg gatgaaccac tttccaactt ggatgcgaaa ttacgtgtgc aaatgcgtgc
     4261 ggaaatcaca aaacttcacc aacaattaga tactacaatg atttacgtta cccatgacca
     4321 aacagaagcg atgacaatgg caactcgtat cgttatcatg aaagacggtg ttatccaaca
     4381 agttggttca ccaaaacaag tttacgatca cccagtaaat atgttcgtag ccggctttat
     4441 tggaagccca gcaatgaact tcttcaaagg gcgtttagaa ggttctaact ttatcggtga
     4501 tgatttcact attgaagttc cagaaggcaa attaaaactt cttaaagata gagggtttga
     4561 cggtaaagat atcgttttcg gtattcgtcc agaagatatt catgatgagc caatcgttat
     4621 tgaagctaat cctggttata cgttcaaagc aactactatt gttgccgagc ttactggtgc
     4681 tgaatttatg cttcatagcc gcgttggtac acatgaattc gtagcacgtg ttgatgctcg
     4741 ctcggaacac caaccaaacg aagtactgac tttagcattc gaaatgtcta aatctcactt
     4801 cttcgaccca gaaacagaag ataacttaac tgattaatat tcttagaaaa acccgccaag
     4861 ctcggcgggt tttcttattt ttcaaaagga aatttaattc cccactgcgt tctaacatcg
     4921 ctcataatcg tgataacatc atttgttaac tgataagtcg tgttttctcc tgtcgcgatg
     4981 ctctcttcca tagctataat ttcatattct aaagctttac ttgtttcacc aacctcaatt
     5041 tcttccactt ttccagttgc cgtgtgtgta acagttgctc ggctggcacg cgggtattca
     5101 tctacagtga taaatccttc ttcacaagca atgacacctc gttttggcat tttagcacgg
     5161 aaagatagcg atacaaccgc tagttcctct tctttatttt tcagtaaaat tccggactgt
     5221 tcgtccacac ctgtttcgaa tttcttcatc gtcgttaata cttcatccgg cgtttcactt
     5281 aaaaaatacc gagcaaaact aagggcatac gtaccaatat caagtaatgc tccacccgcc
     5341 aaatccatat tataaaaacg gtttttcgga tctttttctt tggcacttcc aaaagcaact
     5401 tgaataattt tcaatttacc aattgctcca gattccacaa tttctcgtaa ctttttataa
     5461 agcggcatat ggaatatggt cattgcttct ttaacgatta agcctttctc tttggctagc
     5521 acattgattt cattaagttc ttcgctactt acagttatcg ctttttcagc taaaacgtgt
     5581 ttgccgttat gtaaactttt catgataaat tcatagtggt tagagtgtgg tgtagcgata
     5641 taaactacat ctatcgccgg atcagcaagc attttgtcaa agtcatcgta tacattttct
     5701 attccgtatt gacttgcgaa tgcttgcccc ttctctaaac tccgtgctcc taccgcataa
     5761 atttcacggt tcattcctcg cataccttct gcaaattcgt gtgcaattga acctggtcca
     5821 agaattgccc agtttaaatt tcccatcatg gaactcctcc aaaaaattat tttagaactc
     5881 gataaaaact attgtatcat aataactatt ccgattcgca catggtatac ttaagttatt
     5941 aactaaaaag gatgatttta tttgactaaa aagtatttga tttgttccga tatcgatggc
     6001 acattactgc gccaagatca aactgtctct ataaaaacgc gtgatttaat ccaaacctta
     6061 gaaaaagatg gccatatttt ttctatttct acaggacgga tgtatcgctc tgcccgtgaa
     6121 gttggcttcc aagtgagtaa ttccggtcat gttattgcct caaacggatc ctacgcggct
     6181 attcgcgatg aacaactgct taaaaccact ttagaagaga aggcaattcg ctccacttac
     6241 gatattatga gcgacttcga tctaccactt tttttcttct ctaccaatac acttttctat
     6301 acaaaagaac cacctgcttt cttccaaaat cttgctgata aaagtcgctt agatacagga
     6361 cacaatagtt tttcgcttgt ttctattaat gaaaaaggtg tttttgatga aaacatgcat
     6421 caatttttaa atgctattgt cgttgcggaa gatgatgcct caaaactaac cgaagttcgc
     6481 gctgctctaa atgaagcgaa tggtattaga gtcctttctt cacaccataa taatttagaa
     6541 atacttcctg ctaattctga caaaaaaaca gccgttgaag cgcttggaaa gcattacaat
     6601 attccacgcg aaagaattat tacttttggt gatggcgaaa atgatattgg catgctacaa
     6661 tatgctggaa ccggtgttgc gatggcaaat gcaagcgata atgtcaaagc agcagcagat
     6721 catcttactg acacgaatga agcagatggg gtttacaaat ttctaaaaga attcatttca
     6781 taagagaaga ggaaaaggga tgaaaaaagg gattttaaac gtattattag tttttgcttt
     6841 aattgcgggg ctttccgtac caagttctat gcaagttgaa gctgctgcac caactataaa
     6901 agtgcatttt attgatgttg gtcaaggaga tgccatttat atcaaagcac ctagtggaga
     6961 agatatttta attgatgcag gtaacaaagg taaagggaaa acggttgtaa attatttaaa
     7021 aaaattaaaa gtaaaagata ttgagataat gattgcttct cattcagatg cggataacat
     7081 tggtggatta ccagaagtca tgaataatat caaggtaaaa agcctttatg caccaaaatc
     7141 cacaaacaca acagccgctt acaaaaattt tgtgaacacg gcgaaaaaga aaaaactaac
     7201 cattaaaacc gcaaaagcag gcgtaaaact ccctgtcaaa ggagtaaatg cgcagtttgt
     7261 tggtcctgtt aaaacttacg gaaaaacaga tcgaaacaac tggagtgctg ttctccacgt
     7321 cgcatataag aaaaacacct tccttttcac aggagatgcg caaacaaaag cagaaaacga
     7381 tatgattaag gcaaagaaaa ccttacgagc tgacgtgtta aaagtaagta cacaaggttc
     7441 caaagctgca acaagcaaag cgtttgtcaa tgtcgttaaa ccaaaatacg ccattattag
     7501 cgttgggaaa aatggatatg gccaccccac ttcacaaacc gttaacacat tgacaaaagc
     7561 aaaagcgaaa gtttatcgaa cagatcgtaa taaaaccgtc gttgtaacag gcaacggctc
     7621 cagttattct atcggaaaat aatttatgct tatacgaaaa gccaataata aagatacgac
     7681 tttattattg gctttttcca actatgcgta ttggttaacc tttctgagtt agaaataact
     7741 caaatatgac aaaaatattg cggttacatt ggctaaaaaa gggtattttc ataaaaaaga
     7801 ggttttttag aagtctattt ttagtacttg tgcaaacttt tacgatgata caatgtattt
     7861 gtattagtac aactgaatct gaaggagacg aagtaaaaaa tggcctatcc atttaatcac
     7921 aaagagtttg ttgcaatgat ggaacaatac aatttaaaat ctaacagcat cacaatacct
     7981 gaacatacca ttctaaatga tctagttact gaaaatcggg attgtgtgta tttacttaaa
     8041 tctggtatat tggccggata tattgatttc gacaatgata aaatttattc tattttcaca
     8101 tctaattttt tcatgggata ttatacgatt ttcgataatg catcccttgt tttaacgtat
     8161 caaacactaa ctgagtgcga attgattatc tacaagaaga aagatatcga atactcgctc
     8221 tctctcttcc ctgaaaactt tagcttccaa tacacaatta tgagaactat cgccaaacat
     8281 ggttactaca aatcactttt acaatatcgc gataaaaaag atcaattggc ttttgtattt
     8341 gaaatgcttg tcaaaatcct cgatattcca gtggaagacg gcgtcgcagt actaccaaaa
     8401 tctattagta cgacagtcat taaaaactac tgtaccctgt cgaaagcctt cttctattct
     8461 caacttaaag aattaaaaga agccgggatt atttcaaaag taaaactgca atggcgtatt
     8521 aacatggaag ctctttcaga aaaaaacaat agcataaact aagaaaaagg atgcagtttt
     8581 atgagctgca tccttttttt atttaatcgc taaagtgaaa atactaactt cttgttcttt
     8641 tccgccataa ttagcttgtt tggtttcttc tttcgtgtag ccaaggtatt caaagaatcc
     8701 acgccctttt tcattctcag ctaaaactcc taaggctaat gaatctgccc cgccgtcatt
     8761 cgcccactct ttgatcgttt gatgaagtac ttttccaagg ccgttatgac gagcatctgg
     8821 cgttaaaaga agtaatccga taaaccagcg cccttttcgc ggatagtcag aaacaatatc
     8881 tactaagccg attggttttt cattttcatc caatacagct agtacaaact tatcgaatct
     8941 tgttttcccg tttggaattt ctgtgataat ttttaatgca tcacttttcg atgcaggctt
     9001 atcttgttcc attaaataat aatcttcgga tgccgcgcaa acagcttctg caagttctac
     9061 atctttttca tttaaaaatt tcacatgata attacgtttc attatttcac tcttttcttt
     9121 atcaagtttc caagtcaatc atgccataaa ttccctgttg tttcaataga tagccagaaa
     9181 tccatctgaa tttatgctat actagaatga gtttatgatg gaaaaggagc tagtatattg
     9241 tataaattaa tcgcgattga tattgatgga acactactga cagatgatca taaggttacg
     9301 gacgaagtaa aagaagccat tcgccaagca aaactaaaag gcgtaaaagt ggttctttgt
     9361 actggacgtc cgcttgttgg tgtagaaaat tatctgactg accttgaatt acgtgaggaa
     9421 ggcgattacg ttattagttt taacggcgca tttgttcaag atacgtttac aaaagaagtt
     9481 atttctcact taacgcttgg cattgacgat ttaaaagaaa tttatcaagt gagtttagat
     9541 agcaatttgc acatgcattt ctttgatgac aaagcgcttt atacgccgaa ccgtgaaatc
     9601 ggcaaataca cgattgtcga agcttatctt actggtagcc aactgattta taaagaaatc
     9661 gaaaacgtgc cagaagattt tattatgtca aaagcaatgt ttattgaaga agcccctgag
     9721 ctagaagttg gtattgcgaa aatcccagaa tcattccgcg aaaaatatca tctagttcgt
     9781 agcacgcctt tctacttgga aattctaaat cgtgacgcta gtaaaggtaa cgcggtcaaa
     9841 gaactttccg aaaaacttgg cattaagcaa agcgaagtta tctgcattgg cgaccaagaa
     9901 aatgatgtta caatgcttga atttgctggt cttggtattg cgatgggcaa tgctccagaa
     9961 agaattaagc aattagctga ctatacgact gcatcgaaca atgatagtgg tgtagcaaaa
    10021 gcaattcaaa aatttgtgct ggataaataa aacaaaaacg cagattcgaa taggaatctg
    10081 cgttttttaa ctatcttttt aaaagaatat actttaaaat atattagtag agttttttaa
    10141 taaaaatcgc tttaatggag gttatattaa tggaacatca aaaacgttca ccattcccga
    10201 aagatttctt atggggttct gcatcggcag cttatcaaat cgaaggcgca tgggacgcag
    10261 acggtaaagg taaatcagtt tgggacgaat atgtccgcat tcctggaact actttcaaag
    10321 gtacaaatgg cgatgtagct gtcgaccatt atcaccgtta taaagaagac gtaaaactaa
    10381 tggcagacgc tggcctaaaa gcttaccgtt tctctatcgc ttggactcgt atttttccaa
    10441 atggtaaagg cgaagtgaat gaagctggct tgaaatttta tgataactta attgatgagt
    10501 tgcttaaata tgacattgaa ccacttgtaa cgctttatca ctgggatatc ccacaagcat
    10561 tatttgatga atacggtggc tgggaatctc gccaagttat tgaagatttc acaaattatt
    10621 ccacaacgct attcaaacgt tacggcgacc gcgtgaaata ttgggtttcc ttgaatgagc
    10681 aaaatatctt tgttggtatg ggttatggtc aagcgcttca cccaccaaaa gttagcgatc
    10741 caaaaagaat gtacgcagta aaccacattg cgaacttagc taatgcgagt gttatcaaag
    10801 ctttccacga aatcgttcct gatggaaaaa ttggaccaag ttttgcttac acaccacatt
    10861 atccaatcga cacagatcct aaaaacgttc aagctgccga cgatgcagaa gaattaaaca
    10921 gttatttctg gatggatatg tatgcttttg ggcgctatcc gaaagcggtt tggaaatatt
    10981 tagaagaaaa cgatattgcg ccagttatcg aagacggcga tatggaactt cttgcttctg
    11041 caaaaccaga tttcatgggc gtaaactatt accaatccgc aactgttgct tacaacccgc
    11101 ttgatggcgt tggtcaaaac aacgaaatga acttcactgg taaaaaaggt agcacgaaag
    11161 aaactggtgt ccctggcgtt tacaaaaaag tcgttaatcc ttttgtgaaa acaacgaact
    11221 gggactggac aatcgatcca aaaggcttac aaattgcgct tcgtcgtatt aacagccgct
    11281 atgctttacc aattttaatt acagaaaacg gtttaggtga atttgataaa ttagtggacg
    11341 gagaagtaaa cgatgactac cgtattgact atctaagcgc gcacgcaact gctattcgcg
    11401 atgcaatcag tgatggtgtt gatatgttag gctattgtac ttggagcttc acagaccttc
    11461 taagctggtt aaacggctat caaaaacgtt acggttttgt ttatgttgac cgcgatgtgg
    11521 aagatgatgc gccaatgaca cgtattccga agaaaagtta ttactggtat aaacaagtga
    11581 ttgaaactaa tggagcagat ttataaatga tggctgacct tcaagattgg ctagctagaa
    11641 tccaagcaaa aatcactgcg ttaaaagaaa aagatcccga tttgaattta tttggttcag
    11701 aaagccacgc ctataaactt aatcaaccat tgtctaatca aacgcttacc gagtttgaga
    11761 atgagcatca aattacctta cctcaagatt atcgcgcttt tctagagcaa attggtaatg
    11821 gtggaatggg tccttattat ggcttagaaa cacttgcgga cgggctttgc gcctcgcttg
    11881 attacaagga tgaaaagtac ggggtgcaaa cattaagtga gccttttcca catacagatg
    11941 attggaccgc tcctggttat aaagaaggaa tgtccgatga agattatgat gcttggcaag
    12001 aactgtgctt ccaagataaa gaagtatttg gacttctgcg tatcgctaat tttggttgtg
    12061 gcgtttcgat taaccttgtt gtaaacggtc cttcttatgg agaaatttgg gtggatgaca
    12121 gaaataatga taatggcgtc tatcctgatt tttactttgg gaatgaagaa cgtttaggct
    12181 ttcttgaatg gtatgagtta tggttagata aatctataga ggaaattgaa taaagaaaaa
    12241 accgctaaaa agaagcatac tctttttagc ggttttttta tgcaatgttc atatgtgatg
    12301 gctttttatt tttaaataat ttgcatgcta tactccattt atattataga aaaggagtag
    12361 gatgacatga aaaaatttat tctagcaagc cttgcatgta cgactttgat tagttttagt
    12421 cctttggtag gacaagtcga agtaagcgct gctacaacaa acattgccac tgccccagaa
    12481 aaaaatttac aagaagctcc tccagccacg gttgatcaaa ttttcccaga tgatgctcta
    12541 gcttttaaag tcgcacagga actaggtgtt tccgaggata cagtcgttac acaagaacaa
    12601 ctagatacta tcgaaacaat ggtatatgtg gatttcggtg tggaagattt aacaggcatg
    12661 gaatatttac acaacttaaa atttgtagat ttaagccaaa ataaaattag caacttagag
    12721 aatctcgcta atttaacaga attagaaacg gtatcactta actacaatca aattacagat
    12781 attac
//
LOCUS       DASDXX010000066        12694 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.066, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000066 DASDXX010000000
VERSION     DASDXX010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12694
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.066"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            169..1731
                     /gene="rny"
                     /locus_tag="U0280_001452"
     CDS             169..1731
                     /gene="rny"
                     /locus_tag="U0280_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEM2271403.1"
                     /translation="MTIAITIISSLLFLIVGLVVGSLIFKSSTEKKLAAARGTAELIV
                     EDAKKEAETTKKEALLEAKEENHRLRTEIENELRGRRTETQKAENRLLQREENLDRKD
                     TSLSKREATLERKEESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL
                     NQVEEELTHDTAIMVKESENRAKEESDKKAKNILSLAIQRCAADHVAETTVSVVTLPN
                     DEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQD
                     GRIHPARIEEMVDKARKEVDEHIREVGEQATFEVGIHSIHPDLIKILGRLRYRTSYGQ
                     NVLNHSLEVSKLAGILAGELGEDVTLAKRAGLLHDIGKAIDHEIEGSHVEIGVELATK
                     YKENDVVINSIASHHGDTEATSVIAVLVAAADALSAARPGARSETLENYIRRLEKLEE
                     ISESYDGVEKSYAIQAGREVRIIVEPDTIDDLSSYRLARDIRKRIEEELDYPGHIKVT
                     VIRETRAVEYAK"
     gene            1846..2343
                     /locus_tag="U0280_001453"
     CDS             1846..2343
                     /locus_tag="U0280_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM2271404.1"
                     /translation="MSEWEILPMIEEHYPGVAAVHQEGIETGNATFQEKTLSIEAFDE
                     KYLNTCRLVVLMNGKVIGWAALLPFSSMHAYRGVAELSIYIAKSARGKGIGKALMHEI
                     IQTSEQNGFWTLQSLIFPENKASIALHHTYGFQTLCVHEKLGEMNGVFRDVALLERRS
                     NRNGE"
     gene            2349..3152
                     /locus_tag="U0280_001454"
     CDS             2349..3152
                     /locus_tag="U0280_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HEM2271405.1"
                     /translation="MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASG
                     RGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFIDDAKYLVRPANFPDDTTPGTGMV
                     FVKSNQHEIAVINMQGRTFLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEA
                     MGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRF
                     KTALPTRFEVPKTGRAVLSGCLITLDENTGKAQKIDRILINEDHPFSFD"
     gene            3169..3531
                     /locus_tag="U0280_001455"
     CDS             3169..3531
                     /locus_tag="U0280_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RicAFT regulatory complex protein RicA family
                     protein"
                     /protein_id="HEM2271406.1"
                     /translation="MTVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAK
                     VSKIKLLQKEAVNLEHYQKLEAMKQTENQIDNVRADIDSLPIVTEFRRAQEDANDLLQ
                     SITTEITTKVTTELEKEN"
     gene            3641..6223
                     /gene="mutS"
                     /locus_tag="U0280_001456"
     CDS             3641..6223
                     /gene="mutS"
                     /locus_tag="U0280_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEM2271407.1"
                     /translation="MTEYTPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQI
                     LEITLTGREGGTKEKIPMCGVPYHSASGYIDTLIEKGYKVAICEQVEDPKTTKGMVKR
                     EVVQLISPGTVMDERGLKAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASED
                     RLINELTTLSTRELIVSSSEKEVLSDVMKEQLGLTFSVHEEDTIPVENEKLVTRHMSL
                     SEKRAIGKLLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQ
                     GTLLWLLDNTQTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVENLK
                     NVYDLERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCE
                     ELTEKLEEAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTG
                     IKTMKVGFNRVFGYYIEVTRANTHLLPEGRYERKQTLTNAERYITPELKEKEKLILDA
                     EEKSMELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSE
                     DGSLHVKQGRHPVVEKVMGAQSYVANDCDLDENREILLITGPNMSGKSTYMRQVALTA
                     ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSL
                     ILFDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHV
                     SAVEENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIII
                     ASVKQPEEVHEEVQLSMFPVEPEKKVSSKETKLLKEIASMNIMQMTPMDAMNKLYELQ
                     SKIH"
     gene            6243..8054
                     /gene="mutL"
                     /locus_tag="U0280_001457"
     CDS             6243..8054
                     /gene="mutL"
                     /locus_tag="U0280_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEM2271408.1"
                     /translation="MAKHIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVI
                     DILVEEAGLNKITIIDNGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALP
                     SIASVSHLEMETSTGEAKGTTISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKY
                     LKSLPTELGNITDILNRLALAHPDISFRFSHNGKPLLQTNGNGDLRQVIAAIYGVSIA
                     KKSVPVKAESLDFKISGYAVLPEVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLL
                     PIGRFPIIVLQIEMDPIIVDVNVHPAKLEVRLSKEKELGQLISQMIKETFHKLQLIPD
                     GEISKKQKEDQKSEQIQMSFEENKPVKETPTLFSKPTIPEYVPSDEDAPREDDFILET
                     MPSYEPESQAEQEEHTKERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEF
                     YREKIGEVSRELQELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAH
                     PTWFPKDQEEEMLREIIDEALSAPSISIHKLREDTAIMMSCKKSIKANHYLTTQDMEA
                     LLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKRVM"
     gene            8071..8619
                     /locus_tag="U0280_001458"
     CDS             8071..8619
                     /locus_tag="U0280_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HEM2271409.1"
                     /translation="MELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKAL
                     VKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLA
                     IQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETS
                     EQVNQVIASGAIAVTTSNKHLW"
     gene            9045..11276
                     /gene="pflB"
                     /locus_tag="U0280_001459"
     CDS             9045..11276
                     /gene="pflB"
                     /locus_tag="U0280_001459"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM2271410.1"
                     /translation="MTEQWYEFAGGNWQQEVDVRDFILKNYRLYDGDDTFLVGPTEAT
                     TKLWDQVMDLTKKERENGGVLDMDTKIVSTITSHDPGYLNKDLEKVVGVQTDVPFKRA
                     LQPFGGIRMAEVAAESYGFKVDEEISHIFSEYRKTHNQGVFDAYTAEMRAARKSGVIT
                     GLPDAYGRGRIIGDYRRVALYGVDFLIKQKKQDLNNTGLRTMSDDVIRQREELNEQIR
                     ALGELKVLGEKHGFDLGRPAKTAQEAFQWLYLGYLAAIKEQNGAAMSLGRTSTFLDIY
                     VERDLRNGLITEEEAQEIVDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGITEE
                     GVPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSTHLPSGFKKFCAKMSIKTSAIQYEND
                     DVMRPKWGDDYAIACCVSAMRVGKQMQFFGARANLAKTLLYAINGGIDEKSKAQVGPA
                     YRPVEGDVLDYKEVMEKYDAMMEWIAELYLNTLNVIHYMHDKYAYERIEMALHDTEVL
                     RTMATGIAGLSVAADSLSAIKYATVRPIRDEDGIVVDYEIEGDYPKYGNNDDRVDEIA
                     VELLKTFMTKVRKHKTYRDAVHTTSVLTITSNVVYGKKTGNTPDGRRAGEPFAPGANP
                     MHGRDTKGALASLSSVAKLPYEYGQDGISNTFSIVPKALGREDESQINNLVAMLDGYS
                     TKMGHHLNINVFNRDTLLDAMDHPEEYPQLTIRVSGYAVNFIKLTREQQLDVIHRTMH
                     ESM"
     gene            11353..12099
                     /gene="pflA"
                     /locus_tag="U0280_001460"
     CDS             11353..12099
                     /gene="pflA"
                     /locus_tag="U0280_001460"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HEM2271411.1"
                     /translation="MTEVLGRVHSVETMGTVDGPGIRFIVFMQGCLLRCQFCHNPDTW
                     KIGTGTERSAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVH
                     TTIDSCGGCFTRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAH
                     YLRDKEQPIWIRHVLIPTKTDDPEDLTKLHEFIQTLPNVKQVDVLPYHTMGVYKWKEM
                     GIRYPLEGIEAPEEEVVALANKILETSSYK"
     gene            complement(12133..12663)
                     /locus_tag="U0280_001461"
     CDS             complement(12133..12663)
                     /locus_tag="U0280_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2271412.1"
                     /translation="MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLS
                     KLEKAGFLVVHKHSQDKKPDKKVYTITQTGLDSLLEWSETPLKIPVTRDEFTTKVQLD
                     WLNNARTKGLIQERESYLKEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLD
                     LIQTELKWCEEMYKIL"
BASE COUNT         4367 a         2254 c         2615 g         3458 t
ORIGIN      
        1 gtatatttta tattgctggg agacaagggg gaagtttttt cctttgaaaa tcggcttcaa
       61 ctgaatgggg agattagcac tcggttgttg atgaaaaata cgcatgtgcc agaattctgg
      121 ccaccgacat aacaataacg aaaattgaat agcaaaggag gtgtaaggat gacaatcgca
      181 atcacgatca tctccagttt gcttttctta atcgtcggtc tagttgttgg ttctctaatt
      241 tttaaatcta gtacagagaa aaaactggct gctgcaaggg ggactgcgga attaattgta
      301 gaggatgcga agaaagaagc agaaactaca aaaaaagaag cattgcttga agcgaaggaa
      361 gagaatcata ggttacgtac tgaaatcgaa aatgaacttc gtgggcgaag aacagagaca
      421 cagaaagcag aaaatcgctt attgcaaagg gaggaaaacc tcgaccgtaa agatacttct
      481 ttaagtaaac gagaagctac acttgaaaga aaagaggaga gtatcagtaa acgtcaacaa
      541 caaattgaag agaaagaaag caaactagct gagatgattc aagcggagca gacagaactc
      601 gaaagaattt ctgcgctcag caaagaggaa gcgaaatcta tcatccttaa ccaggtagaa
      661 gaggaattaa cacatgatac agcaatcatg gtcaaagaat cagaaaaccg ggccaaggaa
      721 gagtcggata aaaaagcaaa gaatattctc tcactagcta tccagcgttg tgcagctgat
      781 catgtggcag aaacaacggt atctgttgtt accttaccaa atgatgagat gaaaggtcgg
      841 attatcggac gtgaaggccg taatatccgc acgcttgaga cgttaacggg gattgatttg
      901 ataattgatg atacaccgga agcagtaatt ctttccggat ttgatccaat tcgacgtgaa
      961 atcgctagaa tcgccttaga aaaacttgtt caagatggaa gaatccatcc agctcgaatt
     1021 gaagaaatgg tggacaaagc ccgtaaagag gtggacgaac acattcgcga agtcggggaa
     1081 caagcaacat ttgaagttgg aattcattcc atccatcctg atttgataaa aattcttggc
     1141 cgcttgcgtt accgtactag ttacggacaa aacgttctta accactcact cgaagtttca
     1201 aaacttgcag gaattcttgc aggagagctt ggcgaagacg ttacgcttgc taaacgggcc
     1261 ggactacttc atgacatcgg gaaagcaatt gaccatgaaa ttgaaggcag tcatgttgaa
     1321 atcggcgtgg aacttgctac caaatacaaa gaaaatgatg tggtaatcaa tagtattgct
     1381 tcccatcacg gagatacaga agctacttct gttatcgcag tattggtcgc agcggcagat
     1441 gcactttctg ctgcaagacc gggagctcgt agtgaaacgc ttgaaaatta catccgtcgt
     1501 ttagaaaaat tagaagaaat ttctgagtct tacgatggtg tagaaaaatc ttatgctatc
     1561 caagcaggac gtgaagtacg tatcatcgtt gaaccagata caattgatga tctttcttct
     1621 taccgccttg ctcgcgacat aagaaaacga attgaagagg aattagatta tcctggtcac
     1681 attaaagtga ctgtcattcg tgaaacaaga gcagttgaat acgctaaata ataattaaaa
     1741 gatacatcgc aaatttattt tgcggtgtat ctttttttaa tcggttgcct aggtcgagta
     1801 agaacggtat aattaatgga taaacgaaaa agggaggcgg agtttttgag tgagtgggaa
     1861 attttgccta tgatagaaga gcactatccg ggagtagctg cagtccatca agagggcatt
     1921 gaaacaggaa acgctacttt tcaagagaag acactatcta tagaagcgtt tgatgaaaag
     1981 tacttaaaca cttgtcgatt ggttgtcctt atgaacggca aagtgattgg ctgggcagcg
     2041 ctgttaccat tttctagcat gcatgcttat cgaggagtag ctgaattaag tatttatata
     2101 gcaaaaagtg cccgtggaaa aggcattgga aaagcactta tgcatgaaat tatccagaca
     2161 agcgagcaga atggtttttg gacattgcaa tctttgattt ttccagaaaa taaagctagc
     2221 attgcgcttc atcatacata tggattccaa actttatgcg tccacgaaaa attaggcgaa
     2281 atgaatggcg tttttcggga tgttgcacta ttagaacgta gaagtaatag aaacggagaa
     2341 taaacaaaat gaaaatacta tttatcggtg atgttgtcgg ttctatcggc cgcgatgcca
     2401 taacagaata tttaccacaa ttaaagaaaa aatataaacc tactatcacg gtgattaacg
     2461 gtgaaaatgc agcgagcggg cgtgggatta cagagaaaat ttataaagat tttctggagc
     2521 ttggtgctaa tgctgtaaca cttgggaacc atacatggga taatcgtgat atttttgaat
     2581 ttatcgatga cgctaagtat ttagtgcgcc cagcaaactt tccagatgat actacacctg
     2641 gtacgggaat ggtttttgtg aaaagcaatc agcatgaaat tgccgttatc aacatgcaag
     2701 gtcggacttt tctagcagat ttagacgatc cattccgcaa aatggacact ttgatagaag
     2761 aagcaaagaa acgcactaat attatttttg tggattttca tgcagaaact actagtgaaa
     2821 aagaagcaat gggttggtat ttagatggtc gtgttacggc tgttgttggc acgcatactc
     2881 atgtgcaaac ttcggataac cgcattcttc cagaaggaac agcctatctg acggatactg
     2941 gtatgactgg tccatatgat gctatcctcg gaatggaaaa ggaagctgtt atccgtcgat
     3001 ttaaaacagc tttaccaact aggttcgaag ttcctaaaac tggtcgagca gtcttgtcgg
     3061 gctgtttaat cacacttgac gaaaatactg gaaaagcaca aaaaattgac cgaattctca
     3121 tcaatgaaga ccacccattt tcctttgatt aagaatggag atgaaattgt gacagtttca
     3181 aaagacgaaa tcatgaaaaa agctaccgaa cttcgtgatg cgcttcaaca aacggaagaa
     3241 gtatcgtttt accgtcttgc cgaggaaaga atcaatgcga actccaaagt agcagcgaag
     3301 gtttctaaaa taaaattact tcaaaaagaa gcagtaaatt tagagcatta tcaaaaactt
     3361 gaagcgatga aacaaaccga aaaccaaatt gataacgttc gcgcagatat tgattcgctt
     3421 ccgattgtaa cagaattcag acgcgctcaa gaagacgcca acgatctttt acaatcgatt
     3481 acaacagaaa tcactacaaa agtaactaca gagcttgaaa aagaaaatta accacttaaa
     3541 actgccaaaa catcggcagt tttttccttt tgcggtcgca gggaaatgaa actttatgct
     3601 ataatgagag gatgaaaaag aagtaaggga tgatgagata atgacagaat atacaccaat
     3661 gattaagcag tacttggaaa tcaaagacaa atatcaagat gctttcttat ttttccgttt
     3721 aggagatttt tatgaaatgt tttttgagga tgcactgaac gcttctcaaa ttttagaaat
     3781 tacattaact ggtcgtgaag gtgggacaaa agagaaaatc ccaatgtgcg gggttccata
     3841 ccattcagcg agcggctata ttgatacatt aattgaaaaa ggctataaag ttgcgatatg
     3901 tgagcaagtc gaggatccta aaacaaccaa aggcatggta aagcgagaag tagtgcagtt
     3961 aatttcacca ggaaccgtta tggacgaacg cggcttaaaa gcaaaagaaa ataactatat
     4021 cgcctccctt tattgctatg aaggcaaaga gtacggcttt gcttattctg atttatcaac
     4081 aggtgaatta aaatcaaccg taattgaagc tagcgaagat cgtttgatta atgaactaac
     4141 gacactttca acaagagaat tgattgtttc ttcctcggaa aaagaagtgc tttcagatgt
     4201 catgaaggag caactaggtt taactttttc tgtacacgaa gaagatacga ttcctgtcga
     4261 aaacgagaaa ttagtaaccc gccacatgtc attatccgaa aaacgtgcca ttggtaagtt
     4321 actccattat ttaaaagaaa cgcaaaagcg ggatttaggg catttacaac aagctgtcca
     4381 ttacgaaacg agcaattata tgaagatgga ctactattcc aaacgtaatt tagaattagc
     4441 agagtcgatt cgtggtaaag gtcgtcaagg tacgttactt tggcttctag ataataccca
     4501 aactgctatg ggcggaagaa tgctcaaaca atggattgat cgtccgttaa tagatcgaaa
     4561 aaaaatcatt gatcgacaaa atgatgttag cgaattaatg gcacactttt tcgaacgcct
     4621 agagttagta gaaaacttga aaaacgtcta cgatttagaa cgccttgctg gtcgagttgc
     4681 atacggcaat gtgaatgcac gagacttaat tcaattgcgt aattcgttat atcagatccc
     4741 tcgtattcgc gcgacactgt tgtcaatgag tagcgagagt ctcaccgaac ttgccaacca
     4801 attagatcca tgtgaagaac taaccgaaaa attagaagaa gcaatcatgg attctgcacc
     4861 gatttccatt cgggaaggcg ggattattaa agatggttat aatagccagt tagatacgta
     4921 ccgcgatgca agccgcaatg gaaaaacgtg gattgcagaa ttagaacgta aagaacgtga
     4981 actaacgggt attaaaacga tgaaggtagg atttaatcga gtattcggct attatattga
     5041 agttacacgt gcaaacacgc atctgctccc agaaggccgc tatgagcgca aacagacact
     5101 aacaaatgcc gaacgttata tcacgcctga actaaaagaa aaagaaaaac tcattttaga
     5161 tgcagaagaa aaaagcatgg aattagagta ccaattattt tctgaagtac gagaaatggt
     5221 aaaagactac atagaacgtc tgcaaaaatt agccaaatct gttagtgaaa tcgattgcct
     5281 gcaaagtttt gcggatatta gcgagaaaaa ccatttcatt cgtccgacat taagcgaaga
     5341 cggttccctg cacgtaaaac aaggtcgtca tcccgttgta gaaaaagtaa tgggtgccca
     5401 gagctatgta gcaaatgact gtgatttaga tgaaaatcgg gaaattttac ttataactgg
     5461 tcctaatatg tcaggtaaaa gcacttatat gcgccaagta gccttaacag caatctgcgc
     5521 gcaagttggt tgttttgttc ctgcagaaga agcgatatta ccaatttttg accaaatttt
     5581 cacgagaatt ggcgcagcag atgatctaat tgccggtcaa agtacattta tggtagaaat
     5641 gttagaagct agaaatgcca ttgttcacgc aacgaaagat agtttaattt tatttgatga
     5701 aattggtcgt ggaacagcta cttacgacgg aatggcgctt gctcaagcaa tcattgaata
     5761 tatccatgaa aatgtccatg ctaaaacact tttctccacc cattatcatg aattaactga
     5821 tttggagaaa gaactgagtg ggttacaaaa tattcacgtt agtgctgtag aagaaaatgg
     5881 caaagtagtt ttccttcata aaattaaaga aggcccagca gacaaaagtt atggtattca
     5941 tgtcgctgag ctagcagaat taccaaaatc acttattgaa cgagcgagcc gtattttaga
     6001 acaactggaa aatgacgata agaaaatcat tatcgctagc gtgaagcagc cagaagaagt
     6061 tcacgaagaa gtgcaactgt cgatgttccc agtggagcca gaaaagaaag tatcttctaa
     6121 agaaacaaaa ctactaaaag aaattgcctc catgaacatt atgcagatga caccaatgga
     6181 cgcgatgaat aaattatacg aacttcaaag taaaatccat taaaaagaaa ggcgggtttt
     6241 aaatggctaa acatattgtc gaattaaccg atgctctatc caataaaatt gctgccggag
     6301 aagtagtaga acgccctgct tcagtcgtta aagaattagt agaaaatgca attgatgcag
     6361 ggagcaccgt catagatatt ttagtggaag aagcgggatt aaataaaatt accattattg
     6421 ataacggtag tggcattgaa gaagaagatg tcgcaacagc ttttttacgt cacgccacaa
     6481 gcaaaatcaa aaacgaagca gatttattcc gtgtgcatac actaggattc cgcggtgagg
     6541 cacttccaag tattgcctct gtgtcccatt tagagatgga aacttccact ggcgaagcaa
     6601 aaggaacgac catttcttta gaaggcggga aaataatcga acaaaaaagc ggacatgcta
     6661 gaaaaggaac acaaatcgaa gtatcccagt tgttctttaa tacgccagca cgcctaaaat
     6721 atttgaaaag tttaccaacc gagcttggta acataaccga tattctaaat cgcttagctt
     6781 tggcgcatcc agatatcagt ttccgctttt cacacaacgg gaaaccttta ttacaaacca
     6841 atgggaatgg ggatttacgc caagtaattg cagcaattta cggtgtttca attgcgaaaa
     6901 aatcagtacc agttaaagca gagtcacttg attttaaaat ttctggatat gctgtattac
     6961 cagaagtgaa tcgctctaac cgtaattata tttcgaccat cattaacggt cgttttatta
     7021 aaaatttcgc attagtaaaa gctattcaag aaggatatca cacgctctta ccaattggac
     7081 gtttcccgat tatcgttctc caaatcgaga tggacccaat tattgtagat gtaaacgttc
     7141 atcctgctaa attagaagtc cgcttaagta aagaaaaaga attaggacaa ctaattagtc
     7201 aaatgattaa agagactttc cacaaattgc aactaattcc agatggagag atttctaaaa
     7261 aacaaaaaga agaccaaaaa tcggaacaaa tccaaatgtc ttttgaagaa aataaacccg
     7321 taaaagaaac accaactctt ttttcaaaac caactatccc ggaatatgtc ccttcagatg
     7381 aggatgctcc acgagaagat gattttattt tggaaacaat gccgtcctat gaaccagaat
     7441 ctcaagcgga gcaagaagag catacgaaag aacgtattcc taaaatgtat ccaattggtc
     7501 aaatgcatgc aacttatatt tttgcgcaaa atgaaaatgg cttatatatc attgatcaac
     7561 atgcagcaca ggaacggatt aaatacgaat tttatcgtga gaaaattgga gaagttagtc
     7621 gcgagttgca agaattactt gttcctattg tgcttgaatt tccagcggat gagtatgttc
     7681 gtttagaaga acaaaaagct aaattagaag aggtcggcgt tttcctagag aacttcgggc
     7741 aaaatagttt tatcattcgt gcgcatccaa cttggttccc gaaagaccaa gaagaggaga
     7801 tgcttcggga aattattgat gaagcgttat ccgctccaag cataagtatt cataaattaa
     7861 gggaagacac agctattatg atgagttgta aaaaatcaat taaagcaaat cactatttaa
     7921 caacgcaaga catggaagca ttactcgata cactgagaga agcaagcgat ccattcactt
     7981 gtcctcatgg acgtccggtg attatccaat actcaacata tgaactagaa aaaatgttta
     8041 aacgtgtgat gtaaaagagg aggaaataat ttggagttac cattttccaa tcaatcaatc
     8101 atcccagctg cacataatca aaaagatatg gaaaaaattt tagagcttga tttgacatat
     8161 atggtgatgc tggaaacaca tgtggctcaa ttaaaagcat tagtcaaata cgcacaagcc
     8221 ggcgggaaaa aagttttatt acatgccgat ttagtcaatg gactgaaaaa tgacgactac
     8281 gcaatagact ttttatgtac agaaatttgt cctgatggta ttatttcgac tagaggaaat
     8341 gccattatga aagctaaaca gcacaaaatg ctagccatac aacgtctttt catgattgat
     8401 tcaagcgcct ataacaaagg tgtagcattg atacaaaaag tccaacctga ttgtattgaa
     8461 cttttaccag gtattattcc tgagcaagta caaaagatga ctcaaaagct tcatatccct
     8521 gtaattgcag gaggattaat tgaaactagt gaacaagtca atcaagtaat agctagcggg
     8581 gccatcgcag ttacaacatc caataaacat ttatggtaaa taaacagcta agtcgtgtag
     8641 caataacgac ttagctgttc ttatgaaaaa caatgaaaac gctatattta cccgtggaac
     8701 attgctagac aacgttttaa gcggtttcta actgttctat ataaaatagc cacctttaaa
     8761 ctgtaccata acaggtaagg ggagttggag tggtacagca aaaattaata attaaaataa
     8821 aaacaaaatt agaatcataa taaattaggg aaatggctat ttaaaggtaa ttttaagctt
     8881 tttaagttta aaagacacaa aaaagtcata aaaaagtttg aaaaatattg cacaaaactg
     8941 tagcattttc cagagaatat gttatgataa cagtgtagat tatttataaa ttagtttgct
     9001 caaaaaagca cgctcgagaa tgaacaataa atggaggtta tatgatgact gaacaatggt
     9061 atgaattcgc aggtggtaac tggcaacaag aagtagatgt acgtgacttt atcttaaaaa
     9121 actatcgctt atatgacggt gacgacacat tcttagttgg cccaaccgaa gcaactacaa
     9181 aactttggga tcaagtaatg gacttaacta aaaaagaacg tgaaaacggt ggcgtactgg
     9241 atatggatac caaaatcgtt tcaaccatca cttcacatga cccaggttac ttaaataaag
     9301 atttagaaaa agttgtcggt gttcaaactg acgtaccttt caaacgcgct ttacaaccat
     9361 tcggcggaat ccgtatggca gaagttgcag ctgaatctta tggttttaaa gtagacgaag
     9421 aaattagtca tattttttct gaataccgta aaacgcataa ccaaggtgta tttgatgctt
     9481 atactgctga aatgcgcgca gctcgtaaat caggcgtaat tactggtctt ccagatgctt
     9541 atggccgtgg ccgtattatc ggtgactacc gtcgtgtagc actttacgga gtagacttct
     9601 taattaaaca aaagaaacaa gatttaaaca atacaggttt acgtacaatg agcgatgacg
     9661 ttatccgtca acgtgaagaa cttaacgaac aaattcgtgc tcttggcgaa ttaaaagtac
     9721 taggcgaaaa acatggtttc gatcttggtc gcccagctaa aactgcacaa gaagctttcc
     9781 aatggttata ccttggttac ttagcagcaa ttaaagaaca aaatggtgct gctatgagct
     9841 taggacgtac atctacattc cttgatattt atgtagaacg tgatcttcgt aacggcttaa
     9901 ttactgaaga agaagcgcaa gaaatcgttg accacttcat catgaaatta cgccttgtaa
     9961 aatttgctcg tacaccagat tacaatgaat tattctctgg agatccaaca tgggttactg
    10021 aatccatcgg tggtattaca gaagaaggcg ttccacttgt aacgaaaaac tcattccgtt
    10081 tcttacacac tttagataac ttaggacctg ctccagaacc aaacttaact gtactttggt
    10141 ccactcattt accatcagga ttcaagaaat tctgtgctaa aatgtctatc aaaacatctg
    10201 ctattcaata cgaaaatgac gatgttatgc gccctaaatg gggagatgac tatgcaatcg
    10261 catgttgtgt atctgcaatg cgcgttggta aacaaatgca attctttggt gctcgtgcca
    10321 accttgctaa aacacttctt tacgcaatca atggtggtat cgatgaaaaa tctaaagcac
    10381 aagttggacc tgcttatcgt ccagttgaag gcgacgtatt agactacaaa gaagtaatgg
    10441 aaaaatatga tgcaatgatg gaatggattg cagaacttta ccttaataca ttaaatgtta
    10501 ttcactatat gcatgataaa tacgcttacg aacgtatcga aatggcttta catgatacag
    10561 aagtattacg tactatggca actggtatcg ctggactttc tgttgcagct gactccttat
    10621 ctgctattaa atatgctact gttcgtccaa ttcgtgacga agatggcatc gtggttgatt
    10681 atgaaatcga aggcgactat cctaaatacg gaaataatga tgaccgtgta gacgaaattg
    10741 ctgtagaact tctaaaaaca ttcatgacta aagttagaaa acataaaact taccgtgatg
    10801 cagttcacac aacttctgtt cttacaatca cttctaacgt ggtttatggt aagaaaactg
    10861 gtaacactcc agacggacgt cgtgcaggag aaccatttgc accaggtgcg aacccaatgc
    10921 atggccgtga tacaaaaggt gctttagctt ctctatcttc tgttgctaaa cttccttacg
    10981 aatatggtca agatggtatt tctaacacat tctctatcgt accaaaagct ttaggtcgcg
    11041 aagacgaatc tcaaatcaat aacttagttg caatgctaga tggttattct acaaaaatgg
    11101 gacatcactt aaacatcaac gtattcaatc gtgatacatt acttgatgcg atggatcatc
    11161 cagaagagta tccgcaatta actatccgtg tatctggata tgcagttaac ttcatcaaat
    11221 taacacgtga acaacaatta gatgttattc accgtacaat gcacgaatcc atgtaataat
    11281 taggcgagaa cgctttggca aggattgctc accgtagcaa tccttgttat ttaggaaagg
    11341 aagaggagaa ttatgacaga ggttttagga agagttcatt cagtagaaac aatgggaaca
    11401 gtagacggtc caggtatccg ctttattgtt tttatgcagg ggtgtttact tcgttgccaa
    11461 ttttgtcata atcccgatac ttggaaaatt ggtactggca cagaacgttc tgcccaagat
    11521 gtatttgacg aagcaattaa gtataaagag ttttgggatg catcaggtgg cggcgtgaca
    11581 gttagtggcg gtgaaccgtt gcttcaagta gatttcctaa tcgagttttt cacgctatgt
    11641 aaagcagcag gagtgcacac aactattgat tcttgtggtg gttgtttcac acgtgatccg
    11701 gagtttattg agaaattgga tcgtttgatg gaagtaacgg atttaatttt actggatatt
    11761 aagcaaatca acccagaaaa gcatttaaaa ctgacaacga aatctaatgc accaataatc
    11821 gattttgctc attatttacg tgacaaagag caaccaattt ggattagaca tgtactaatt
    11881 ccaaccaaga cagatgatcc agaagattta acaaagctcc acgaattcat tcaaactctt
    11941 ccaaacgtaa aacaagtgga tgtgcttcca taccatacaa tgggtgttta caaatggaaa
    12001 gaaatgggca ttcgttatcc gttagaagga atcgaggcgc cagaagaaga agtggtagca
    12061 cttgccaata aaatcttaga aactagtagt tataaatagt aaaaaccggc gaacttagta
    12121 ttcgccggtt ttttatagta ttttatacat ttcctcacac cattttaatt cggtttgaat
    12181 caaatctaat cgtcttgcat agacttgata agacatgttt tttagcttgt cttgtttggt
    12241 ttttaggtca aataatttag cgaaatgatc cagtgtttct tcaattaaac ctaattgctc
    12301 ttttaaatag ctttctcttt cttgaataag ccctttggtt ctggcattgt ttagccagtc
    12361 aagctgtact tttgttgtaa attcatctcg tgtgacaggg attttaagtg gtgtttcaga
    12421 ccattcaagc agggagtcta agccggtttg tgtgatagta tagacttttt tatcaggctt
    12481 tttatcttgg gaatgcttat ggacaactaa aaaacctgct ttttctaact tagataaaga
    12541 aggataaatt tggctatgat gtgtattttg cataattcga agcctgtttg cgagttcata
    12601 accactagat gcttcacgag caatcatttg taataacgta tattctaaga catttggtat
    12661 catacaatag cacctctaaa tttctattta atct
//
LOCUS       DASDXX010000067        12648 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.067, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000067 DASDXX010000000
VERSION     DASDXX010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12648
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.067"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..574
                     /gene="lgt"
                     /locus_tag="U0280_001462"
     CDS             <1..574
                     /gene="lgt"
                     /locus_tag="U0280_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM2271413.1"
                     /translation="KIWHGGIAIYGALIGAVLTAIIFSRIKKISFWQLADVVAPSLII
                     AQAIGRWGNFMNQEAHGAETTRSFLESLHLPDFIINQMYIDGAYYQPTFLYESLWNVL
                     GFIVLLIIRRTKIRRGELFLGYVIWYSFGRFFIEGMRTDSLMWGDFRVSQVLSLLLIV
                     LSIGIIIYRRMKMNPPYYMEDKFGKVVKKK"
     gene            618..1271
                     /gene="ppaX"
                     /locus_tag="U0280_001463"
     CDS             618..1271
                     /gene="ppaX"
                     /locus_tag="U0280_001463"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrophosphatase PpaX"
                     /protein_id="HEM2271414.1"
                     /translation="MTGKITTLLFDLDGTLINTNELIIKTFQVTFQEFMPDRVFTRED
                     ILPFIGPSLMETFREINPAHADEMRAFYREYNLKHHDDLILEYDGVYEAIRALYEEDY
                     KLGIVSTKMYDTIMRGLKVTGLDKFFQVVIGLDQVSNAKPDPEGIEMALSLLNATKEE
                     AIMIGDNYHDIEAGKNAETLTAGVAWAIKGPEHLAQFQPDFMLEKMSDLLAIVRDEE"
     gene            1275..1772
                     /locus_tag="U0280_001464"
     CDS             1275..1772
                     /locus_tag="U0280_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEM2271415.1"
                     /translation="MRRLDRFKAPDDTVNTLFQVYKTISFWKVLKNTLVIELGRFFPW
                     MGGKRAIYRACLGMEIGEKTAIAYKVMPDLFFPEKIMIGENSIIGYHTTILTHEYLLS
                     EYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKE
                     KATLT"
     gene            1857..3332
                     /locus_tag="U0280_001465"
     CDS             1857..3332
                     /locus_tag="U0280_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271416.1"
                     /translation="MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRA
                     SELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFAYMKD
                     YRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKE
                     INRYLAEEDSAAACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRN
                     PGNLLGICDLFIYHFYKGNRKEADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEAD
                     DLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEA
                     DLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFT
                     NFDYFPDGAIEQNGYLIAKAMIILKENGVLLNEENMALYKQMFSLVLIDAGKDLILGR
                     YTIETVASAIAKLFLPHLKLELVEEFECSKCARDIERVLSR"
     gene            3411..4370
                     /gene="trxB"
                     /locus_tag="U0280_001466"
     CDS             3411..4370
                     /gene="trxB"
                     /locus_tag="U0280_001466"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEM2271417.1"
                     /translation="MASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIERGVPGGQ
                     MVNTAEVENYPGFDSILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGKEFKTVTAGSK
                     TYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGAFFKNRELIVVGGGDSAVE
                     EGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKKVTGA
                     KLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDEEMRTNLPGIFA
                     AGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK"
     gene            4490..5473
                     /gene="galE"
                     /locus_tag="U0280_001467"
     CDS             4490..5473
                     /gene="galE"
                     /locus_tag="U0280_001467"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEM2271418.1"
                     /translation="MSIVVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHKESIHTK
                     AKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLVYLNNNVYGTQIVLE
                     VMEQFGVKHIVFSSSAATYGEPERVPITEDMPTNPESTYGETKLIMEKMMKWCDKAYD
                     MKYVALRYFNVAGAKADGSIGEDHKPESHLVPIILQVALGQREKLAIYGDDYNTPDGT
                     CIRDYVQVEDLIDAHIKALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPA
                     EVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY"
     gene            5490..6551
                     /locus_tag="U0280_001468"
     CDS             5490..6551
                     /locus_tag="U0280_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEM2271419.1"
                     /translation="MIFIEVMKERFGEFEGETVWKWTMVNDHGMRMSVLNYGAIVTSL
                     ETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNE
                     GANHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGNIDAKMTYTLNNK
                     NEWLLDYEAKSDQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIG
                     EKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHAFILKHENSRPDAVLFDPKS
                     GRRLEMETKADSVLIYTANSLDGSFEIGERTVPKYAGITMETQGLVDAINHDGFGDIV
                     LRPEKPFTSRTAFRFTVES"
     gene            6593..8323
                     /locus_tag="U0280_001469"
     CDS             6593..8323
                     /locus_tag="U0280_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM2271420.1"
                     /translation="MNWQEEYQKWVANDKLDSTLRKQLTNMEANEKELEDSFYRNMEF
                     GTAGMRGVLGAGTNRMNIYTIRKASLGLAQFVAENGDEAKKRGIVIAYDPRHMSREFA
                     FESAAVLGHHGVKSYVFDALRPTPELSFAVRHLNAFGGIVITASHNPPEYNGYKIYGE
                     DGGQMPPTGASAVIEYINAVEDIFSVEVANQELLIENGLLEVISEKVDRPYLEKLKEV
                     IVNKELVQERGEDLKIVFTPLHGTGGILGVPALESVGFTNIVKVDEQFVNDPDFGTVK
                     SPNPENREAFLLAIEYGKKFGGDILVGTDPDADRLGVAVRNLDGEYEVLSGNQIGAII
                     LHYLLKQKKAQNELPANAAVLKSIVTSNLGTEIAKHYGAEMIEVLTGFKFIAEQIKHF
                     EETGKHTFEFGYEESNGYMVKPFTRDKDAIQAVLAIAEVALVSKVEGGSLLEDLEQIY
                     AEFGYYKEDLVSLTLSGKDGSRRIKEITSNFREQLPTSMGGFPVERAEDYLRSETTWI
                     ATGKTEAIHLPTADVIKCYFEDGSWFCLRPSGTEPKIKFYFSIRGESKEESATKLEKV
                     KADLMQHIEA"
     gene            8431..9306
                     /gene="rapZ"
                     /locus_tag="U0280_001470"
     CDS             8431..9306
                     /gene="rapZ"
                     /locus_tag="U0280_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEM2271421.1"
                     /translation="MASKQLKLVIITGMSGAGKTVAMQSLEDLGYFCVDNLPPSLLPK
                     FWELMKESDKMDKIALVMDLRGREFFDSIEPALDELDNTNFITTKILFLEADDKVLVS
                     RYKETRRHHPLEPNGSVLDGINAERELLSDLKGRSQLVINTSNMAPRELRERINNEFQ
                     TEDKDIFNVQLMSFGFKYGIPIDADLVFDVRFLPNPHYIDKMRPLTGLDEDVYEYVMK
                     WPETQTFLDKLVDLLMFTLPFYKREGKTQLVIAIGCTGGQHRSVALTEFVGKAIQQKY
                     ETTISHRDMKRRKGR"
     gene            9308..10276
                     /locus_tag="U0280_001471"
     CDS             9308..10276
                     /locus_tag="U0280_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HEM2271422.1"
                     /translation="MKKEMKPKVVVIGGGTGLPVILKGLKKKDIHLTAIVTVADDGGS
                     SGKIREQMDVLPPGDIRNVMLALSNVDPRVVDLFQYRFAVDGDLSGHVIGNLILTALS
                     QLNDSYVDAINVLATVLKIRGKVIPATDQPLILNAEMEDGSIVHGESLIPLQGKHINR
                     VYIEPENVKPYPTAVEAVKEADLIVIGPGSLYTSILPNLLLTELADEIIASKAPKVYI
                     TNILTQIGETDFFSDADHIKVIHEHVGKSFIDKTLINTTTVPKELLFPEDVAQVEHNA
                     KGMEELGVEAIYQDFLSTEDGLVRHAAEKVADAVLAMLPNQTIEKE"
     gene            10284..11255
                     /gene="whiA"
                     /locus_tag="U0280_001472"
     CDS             10284..11255
                     /gene="whiA"
                     /locus_tag="U0280_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEM2271423.1"
                     /translation="MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIM
                     DVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRI
                     LEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEA
                     ICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRN
                     SVNRLVNCETANLNKTINAAVRQIDNIKYIQSTVGLEALPERLREIAALRIANEDVTL
                     KELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKISNS"
     gene            11282..12298
                     /gene="namA"
                     /locus_tag="U0280_001473"
     CDS             11282..12298
                     /gene="namA"
                     /locus_tag="U0280_001473"
                     /EC_number="1.6.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH dehydrogenase NamA"
                     /protein_id="HEM2271424.1"
                     /translation="MSKLFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHY
                     VSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVDGLHYHGAKAGIQL
                     AHAGRKAVLPGEIVAPSAIAFDEKSDKPVELTKEAIKEVVADFKRAAYRAKEAGFDVI
                     EIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAVKEVWDGPIIVRVSAT
                     DYAHGGLQLEDHIPFAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAG
                     IATGALGLITRGEQAEEILCNERADLIIVGRELLRNPYFAKDAAKQLGETIEGPKQYS
                     RAWK"
     gene            complement(12351..>12648)
                     /locus_tag="U0280_001474"
     CDS             complement(12351..>12648)
                     /locus_tag="U0280_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2271425.1"
                     /translation="SQNGELPDQTINQGNTCTIDLPIYFQMEEINMLVSPEVTGEYIG
                     TNIVQLPTTVNAEDNSITVDTSALSPGEYKLDISYNHNYATGGVCSYDWNVTIN"
BASE COUNT         3978 a         1950 c         2995 g         3725 t
ORIGIN      
        1 gaaaatctgg cacggaggta ttgctattta tggcgcgcta attggtgcag ttttaacggc
       61 aattattttc tcgcggatta agaaaatttc gttctggcaa cttgcggatg tcgttgcgcc
      121 aagtttgatt attgcgcagg caatcgggcg ttggggaaac ttcatgaacc aagaagctca
      181 tggtgcagaa acaacgcgtt cttttctgga aagccttcat ttaccagatt ttattatcaa
      241 ccagatgtac atagatggtg cttattatca accgactttc ttatatgaga gtttatggaa
      301 tgtgcttgga tttattgttc tattaattat tcgtcgcaca aaaattcgtc gtggggagtt
      361 gttcctcggc tatgtaattt ggtattcatt tggaagattc tttattgaag gaatgcggac
      421 agatagctta atgtgggggg actttagagt ttcgcaagtg ctatctttac ttcttattgt
      481 tttgtctatt ggtattatta tttatcgtcg tatgaaaatg aatccaccat attatatgga
      541 agataaattt ggtaaagtag ttaaaaagaa ataaaaaagt tggagatttt cgagtttgat
      601 taagaaagga agaaattatg actgggaaaa ttactacatt gttgtttgac ttagatggta
      661 cgcttataaa tacgaatgaa ttgattatca aaacatttca agtgacattt caagaattca
      721 tgccggaccg ggtttttact agagaggaca ttttaccgtt tatcgggcct tctttaatgg
      781 agactttccg ggaaataaat ccagcgcatg cagatgagat gcgcgctttt taccgagagt
      841 ataatttgaa gcatcatgat gatttaattt tagaatatga tggagtttat gaagcaattc
      901 gtgctttata tgaagaagat tataaacttg gaattgtatc gacgaaaatg tatgatacga
      961 ttatgcgagg tctcaaggta actggcttgg ataaattttt ccaagtggtg attgggttag
     1021 atcaagtgtc taatgctaaa ccagatcctg aaggtattga gatggctctt tctttattaa
     1081 atgcgacaaa agaagaagcg attatgattg gcgataatta tcatgatatt gaagctggaa
     1141 aaaatgcgga aaccctaacc gcgggtgtag cttgggcgat taaaggacca gaacatttgg
     1201 cgcagtttca gccagatttc atgttagaaa aaatgagcga tttactcgca attgttaggg
     1261 acgaggaata gaatttgagg cggctggata ggtttaaggc acccgatgat acagtcaaca
     1321 ccctttttca agtgtataaa acgatttctt tttggaaggt tttgaagaat acgctagtaa
     1381 tagaacttgg tcgttttttt ccatggatgg gcggtaagcg tgcaatttat cgcgcatgtc
     1441 ttggaatgga aattggcgag aagactgcca ttgcctataa agttatgccg gatttatttt
     1501 ttccggaaaa gattatgatt ggcgaaaact caattattgg ttatcacaca actatcttga
     1561 cgcatgaata tttactttcg gagtaccgtg ttggggaagt tgtgattggt cgggatgtga
     1621 tggttggcgc gaatgtcacc attcttccgg gcacagtaat tggagacggg gctgtgattg
     1681 ctgctggggc ggttgtctcg gtggatgtcc cggctggtag ttttgcttat ggaaatccat
     1741 taataataaa agaaaaagct actctgacgt aaaagtcaaa gtagcttttt ttgtcgccca
     1801 aagtcataaa ttctatgtta tactcattag gataaaggta tcttggaggt ggaaaaatgg
     1861 aaaaagacaa aaaaacaccc gcaaaaatct atccatttta tccaaatggt cagttttatt
     1921 ttgaacgcgg tgtcgaagcg tttcgtgatc aaagaattaa agaagcaatc aggtatttag
     1981 tgcgggcatc cgaactggag ccaggagaag ctgttattct ttgtcagctg gcgatatgtt
     2041 atacagaaat tggtcaattc cataaatcga atcagctact tagagaagtt ttagaacagc
     2101 gtaatgggaa catggaatac tgttattatt ttattgctaa taattttgcg tatatgaaag
     2161 attatcggag agcgttacaa tatgctaatc gttatttgga tagttcaact gatggtgaat
     2221 ataccgagga agctaaagat ttaattgaag ttttattaga agaaacgcct tttggtgaga
     2281 caattgaaaa tggcttttct aaattagaac aagaattcta ttcttataaa aaagaaatta
     2341 atcgttattt agcagaagaa gatagtgcag ctgcttgcga tattttaaga aaagtcattg
     2401 atgaaaaacc gaatttttgg cctgcttata atcaactcgc ttcgctttat tttgagcaat
     2461 tgaaagaaga agagggcgtc agagttttaa gtgatttatt atcgagaaat ccgggtaatc
     2521 tcttgggtat ttgtgattta tttatttatc acttttataa ggggaaccgt aaagaggcgg
     2581 atgagcttta tctggaactt cgggatgtcc taccggttct agcgcatcat aaagagaagc
     2641 ttggtctgat tcatgcgatg atgggtgaat acgaggaagc ggatgatttg cttgaacaag
     2701 tggctgactt ggaagtgact gagcgtagta agtattatta tttccgtgcg aaatcttcct
     2761 attatttagg ggatgtggaa ggggcaaaaa tgttttggca ttccttttta gagtgtgatt
     2821 tgtatgaaga tgttcggttt ccgtgggagc aagaggcgga tttaacgaat gacacgcgac
     2881 tggtgcttga gatgcttcaa gaggaagatg atttgactca tatgctaggt gtttatgcat
     2941 taactatttc tggaaatcgt ccggagttag tattattcca cccgttactt gatatgagcg
     3001 attggtctta catggagcat ttaatgttta ctaattttga ttattttccg gatggggcta
     3061 ttgaacaaaa tggttatctg attgcaaaag cgatgattat tttaaaagaa aatggtgttt
     3121 tgttaaatga agaaaatatg gcgttatata agcagatgtt ttcgttagtt ttaatagatg
     3181 ctgggaaaga tttaatactt ggtcgttata cgatagaaac tgtggctagt gcgattgcta
     3241 agctgttttt acctcatttg aagcttgaat tagtagaaga atttgaatgt agtaaatgtg
     3301 cgcgagatat tgagcgagtt ctgagcagat aaatagacct ttttgctatt ccgtattagg
     3361 attaatttag gctaactatt gtatacacat aaacgaggag ggcaaaaaga atggctagtg
     3421 aagaaaaaat ttatgatgtg attattattg gagcgggacc agctggaatg acagctgctt
     3481 tatatacttc ccgtgcagat ttagatacgt taatgattga acgcggagta cccggcggac
     3541 aaatggttaa cacagctgag gttgaaaatt accctggatt tgatagtatt ttaggaccag
     3601 atttatccga taagatgctt agcggtgcga aacaatttgg cgctgagtat gcttatgggg
     3661 acattaaaga agtcgttgat ggcaaagaat ttaaaactgt aacggctgga tcgaaaacct
     3721 ataaagctcg ggcgattatt attgcgactg gtgctgaaca ccggaaactt ggtgcagctg
     3781 gcgaagaaga gcttagtgga cgcggcgttt cttattgtgc tgtttgtgat ggagctttct
     3841 tcaaaaatcg cgaattaatc gtggttggcg gcggagactc tgcagtggaa gaaggaactt
     3901 atttgactcg ttatgcagat aaagtaacga tagtacaccg tcgtgataaa ttgcgcgcac
     3961 aacaaatttt acaagatcgt gctttcaaag atgaaaaagt tgatttcatt tggaatagta
     4021 cagtagaaga aattgttggc gatggcaaaa aagtaactgg agcaaaactt gtttccacag
     4081 tggatggttc cgaatctatt atgccagtgg atggtgtttt catctatgtt ggacttgttc
     4141 cacttacgaa agcattctta aatttaggta ttacagatga tgaaggatac atcgtaacgg
     4201 acgaggaaat gcgtacaaac cttcctggta tttttgcagc tggtgatgtt cgtgcgaaaa
     4261 gcttacgcca aattgtaaca gcaacaggcg atggcggact tgctggacaa aacgctcaaa
     4321 aatatgtaga agaattaaaa gagtcgctag aagcagaggc agctaaataa cagtaaagaa
     4381 aactcgaatg ggtctgagat tatttatctt agacccattt ttgcgtgact atatagactt
     4441 gagtagtgta aaatggaaga caaagactat tgttaggaga gagataataa tgagtattgt
     4501 tgtacttggt ggcgctggct atatcggttc acatgcagta gatgagttaa ttactcgcgg
     4561 atatgaagta gtagttattg ataatttaag aacagggcac aaggaatcca ttcatacaaa
     4621 ggcaaaattt tatgaaggag atattcgaga taaggcattt ttaagttcag tttttgaaaa
     4681 agaaaaggta gatggtgtga ttcactttgc tgctagttca cttgtaggag aatcgatgga
     4741 agtaccgctt gtttatttaa ataataatgt ttatggtacg caaattgtct tagaagtgat
     4801 ggagcaattt ggtgtgaagc atattgtctt ttcttctagc gctgcaacat atggtgagcc
     4861 agaacgagta ccgattacgg aagatatgcc aacaaatccg gaaagtactt acggcgaaac
     4921 gaagctaatc atggaaaaaa tgatgaaatg gtgcgataaa gcgtatgata tgaaatatgt
     4981 tgcactccgg tattttaatg ttgctggcgc caaagcggat ggttcaattg gggaagatca
     5041 caaaccagaa tcacacttag tcccaattat tttacaagtt gcgcttggtc aacgagaaaa
     5101 attagcgatt tacggtgacg actacaatac gcctgatggt acttgtattc gtgattatgt
     5161 acaagtagaa gatttaattg acgcgcatat taaagcgcta gaatacttga aaaatggcgg
     5221 ggaaagtaat attttcaacc ttggtagcag taacggtttt tcagtgaaag aaatgcttga
     5281 agcagctcgt actgtaacag gtaaagaaat tccagctgaa gttgtaccac gccgtgcagg
     5341 agatccagga acgttaattg cttcaagtga taaagcgcgt gaaattcttg gttgggagcc
     5401 aacttataca gacgtaaaag atattatcgc cactgcttgg aaatggcacg tatctcatcc
     5461 aaatggctat taataactta tgaaggaatg tgatttttat cgaagtaatg aaggagcgat
     5521 ttggggagtt tgagggagaa actgtttgga agtggacgat ggtaaatgat catggtatgc
     5581 gcatgagtgt tttaaattac ggagcgattg ttacttccct tgaaacaaaa gataaatttg
     5641 gtgattttgc gaatattagt cttggtttta caaatttaga tgattatttg gcacactccc
     5701 catacttcgg cgcgacactt ggccctgttg ctggacgcat tacaaatggg caatttagtt
     5761 tggacggtaa acaatttcaa ctgattcaaa atgaaggagc taaccatcgt cacggtggga
     5821 aattcaattt tagtaagaag ctttgggatg tttcagtaga aaaaagtctt gatcaaattg
     5881 tgatgacttt tgaatactgc tgggcggatg gagaaaatgg ctatccagga aatattgatg
     5941 caaaaatgac atatacgtta aataataaaa atgaatggct gcttgattat gaagcgaaaa
     6001 gcgatcagcc gactatatat aacccgagca atcatattta ttttaatcta agcggagaag
     6061 ctggttcaac ggttttacaa catcagcttt gggttaatag tgacagcttc ctaccaattg
     6121 atgaagagtt tctcccaatt ggggaaaagc ggttagcgga aaatactatc tttgatttgc
     6181 gtgcaggtcg tgaagtagcg gagattacac aaagtcagga ccagcaagta aaattagttg
     6241 gtgcggggct ggatcatgca ttcattttaa aacatgaaaa tagtcgtcca gatgcagttt
     6301 tgtttgatcc aaagtcagga cggcgcttgg aaatggaaac caaagctgac tcggtattaa
     6361 tttatacggc gaatagtttg gatggctctt ttgagattgg cgagcgaact gtgccaaaat
     6421 atgctggcat aacaatggaa acacagggtt tagtagatgc gattaaccat gacggatttg
     6481 gtgatattgt acttcgacca gaaaaacctt ttacatctag aacagctttt cgtttcacag
     6541 tggagagctg ataaatttta attaaagagt tctaaatgaa ggagtgtaga gaatgaattg
     6601 gcaagaagaa tatcaaaaat gggttgctaa tgacaaatta gatagcacat taagaaaaca
     6661 attaacgaat atggaagcaa atgaaaaaga acttgaggat agtttttatc gtaatatgga
     6721 atttggaacg gctgggatgc gtggtgtact aggcgctgga acaaaccgca tgaatatcta
     6781 tactattcgt aaggcttctc taggtttggc gcaatttgtg gcggagaacg gtgacgaggc
     6841 taagaagcgc ggaatagtaa ttgcgtatga ccctcgtcat atgtcacgcg aatttgcttt
     6901 tgaatcggcg gcggtattag ggcatcatgg tgtgaaaagc tatgtttttg atgcgcttcg
     6961 accaacaccg gaactttcct ttgcagtacg tcatttaaat gcgtttggtg ggattgttat
     7021 tacagctagc cataacccac cagaatacaa tggctacaag atttatggtg aagatggcgg
     7081 acaaatgcct ccaacagggg caagtgctgt aattgaatac ataaacgcgg tagaggatat
     7141 tttttctgta gaagtagcga accaagagct attaattgaa aatggtttac ttgaggtaat
     7201 cagtgaaaaa gtagaccgtc catatttgga aaaattaaaa gaggttattg tcaataaaga
     7261 gcttgttcaa gaacgagggg aggatttgaa aattgttttc acgccccttc atggtactgg
     7321 cggaattctt ggcgttcctg cgcttgaaag tgttggcttt acgaatattg ttaaggttga
     7381 cgagcaattt gtgaatgatc ccgattttgg aacggtaaaa tcgcctaacc cggaaaaccg
     7441 cgaagccttt ttacttgcga ttgaatatgg taagaagttt ggtggcgaca ttttagtcgg
     7501 aacagatccg gatgctgacc gtttaggcgt ggcagttcgt aatcttgacg gcgaatatga
     7561 agtgttatct ggaaaccaga ttggcgcgat tattttacat tatttattaa aacaaaagaa
     7621 agcgcaaaat gaattgccag ctaatgcagc ggtattaaaa tctattgtaa caagtaatct
     7681 tggaacagaa atcgcgaaac attacggtgc ggaaatgatt gaagtattaa ctggtttcaa
     7741 atttattgca gaacaaatta agcactttga agaaactggc aagcatacgt ttgaatttgg
     7801 ttatgaagaa agtaatggtt atatggttaa gccgtttacg cgtgataaag atgcgattca
     7861 agcggtgctt gcgattgcgg aagtggcgct cgttagcaaa gtagaaggtg gaagtttact
     7921 agaagattta gagcaaattt atgctgagtt tggctattac aaagaagatc tagtttcctt
     7981 aactttaagc ggtaaggatg gttctcggcg catcaaagaa attacaagta attttcgcga
     8041 gcaactacca acaagtatgg gtggattccc cgtggaacgt gcggaagatt atttaagaag
     8101 cgaaacaact tggattgcta ccggaaaaac ggaagcgatt catttgccaa cagcagatgt
     8161 cattaaatgt tattttgaag atggttcatg gttctgttta cgtccatccg gcacagaacc
     8221 gaaaatcaaa ttctacttta gtattcgtgg tgaaagtaaa gaagaaagtg caacaaaatt
     8281 agaaaaagtg aaagctgatt tgatgcaaca tatcgaagct taaaaagaaa aatcccggaa
     8341 actcgcttta gagacttttc cgggattttc tagtgagaag tgtgctaaaa tggaagatag
     8401 atattatttg tgcgaaagga tgaggcagat atggcttcta aacaattaaa attagtaatc
     8461 attactggga tgtctggagc aggaaaaaca gtcgcaatgc agtctttaga agatctcggt
     8521 tatttttgtg tagataattt accgccaagt ttacttccaa agttctggga gctaatgaaa
     8581 gaaagcgata aaatggataa aatcgcgctc gtaatggatc ttcgcggccg tgagtttttc
     8641 gattccattg aaccagcgct agatgagcta gataatacca attttataac aacgaaaatc
     8701 ctctttttag aggctgatga taaggtactt gtttcgcgtt ataaagaaac gcgccgccac
     8761 catccactgg agcctaatgg gtctgtgcta gacgggatta atgcagagcg cgaactgctt
     8821 agtgatttaa aaggccgttc gcagttagtt attaatacat cgaatatggc gccacgtgag
     8881 ttacgcgagc gaattaacaa tgaattccaa accgaagata aagatatatt caatgtgcaa
     8941 ttgatgtcat ttggtttcaa atacggcatt ccgattgatg ctgatttagt gtttgatgtg
     9001 cgctttttac cgaatccgca ttacattgac aaaatgcgtc cgttgacagg acttgatgaa
     9061 gatgtgtatg aatatgtgat gaaatggcca gaaacgcaga cctttttaga taagttagta
     9121 gatctattaa tgtttacact tcctttttac aaacgagaag gaaaaacaca attagttatt
     9181 gccattggat gtactggagg acagcatcgt tcagtagctt tgacagagtt cgttggtaag
     9241 gcaattcaac aaaaatatga aacaacgatt tcacaccgag atatgaaacg tagaaagggc
     9301 cgttaatatg aaaaaggaaa tgaaacctaa agtagtagta atcggtggcg ggaccggtct
     9361 tccagtcatt ttaaaagggc ttaaaaagaa ggatattcat ttaacggcca ttgtgaccgt
     9421 agcggacgat ggtggtagtt ctggtaaaat tcgcgagcaa atggatgtgc ttcccccagg
     9481 tgatatacgc aatgtcatgc tagctttatc caatgttgat ccacgggttg tcgatttatt
     9541 tcaatatcgt tttgcggtag atggtgattt atcggggcat gttattggaa atttgatttt
     9601 aacggcttta tcgcaattga atgatagtta tgttgatgcg attaatgtgc tagcaacggt
     9661 gctgaaaatc cgcggcaaag ttattccagc aacggatcaa ccactcatct taaatgccga
     9721 aatggaagat ggttctattg tgcacggtga atcgcttatc ccgttacaag gaaagcatat
     9781 taatcgtgtg tatatcgaac cagaaaatgt aaaaccatat ccgacagcag tcgaagcagt
     9841 gaaagaggct gatttgattg ttattggtcc aggaagttta tacacaagta ttttaccaaa
     9901 tctattactt acggaattag ccgatgaaat tatagcaagt aaggctccga aagtatacat
     9961 tacgaacatt ttaacgcaaa ttggcgaaac cgactttttc tcagatgcgg atcatattaa
    10021 agttatccat gagcatgtgg gaaaatcttt tatagataaa acgttaatta atacgacgac
    10081 tgttccgaaa gaacttttat tcccagagga tgttgcgcaa gtagagcata atgccaaagg
    10141 aatggaagag cttggcgtag aagccattta tcaagatttt ctttctacag aggatggcct
    10201 tgtgcgccat gctgctgaaa aggtggcgga cgcggtttta gcgatgttac ctaaccaaac
    10261 tattgaaaag gagtgagtaa gccatgtcat ttgcatcgga aaccaagaaa gaattaaccc
    10321 atatggacgt aagtgatagc gatgcaaaag tggaactcgc agcttttatt cgaatgaatg
    10381 gtgccatctc gttttcgaat caattagtga taatggatgt ccaaaccgag aatgcagcca
    10441 tagctagacg aatgtatcaa ttactgaaag acttatacga agtgccaata gaacttcttg
    10501 tacgtcgcaa aatgaagttg aaaaaaaata atgtttatat agttcgcttg aagtcaggta
    10561 cacgggggat tttggaagat ttacggatac tagagccacc gatgacgttt acgaaatcga
    10621 ttgatagggg atttgttaag aagaggagcg ccaaacgtgc ttatttacgt ggagcctttt
    10681 tggcaagtgg gtcagttaat aatccggaaa cttcttctta tcatttagaa attttctctg
    10741 tttatgagga gcacaatgag gcgatttgcg ctttgatgaa tcaattcgat ctcaatgcgc
    10801 gaacgcttga acggaaaaat ggttttatta cctatttgaa agaagcggaa aaaatcacgg
    10861 aattcttgag tattatcgga gcaactagcg cgcttcttca ttttgaggat gttcggatta
    10921 tgcgtgatat gcggaattcg gtgaacaggc tagtgaactg tgaaacggcg aatctcaaca
    10981 agacaattaa tgcggctgtt aggcaaatcg ataatatcaa gtatatccaa tcaaccgttg
    11041 ggctagaagc tttaccagaa cgactgcgtg agattgcagc gcttcgtata gctaatgaag
    11101 atgttacctt aaaagagcta ggcgaaatgc tgacaacagg tcaagtaagt aaatcaggta
    11161 ttaatcatcg tctccggaaa ctagatcaga ttgcagagcg ccttagaagt ggggaaacac
    11221 cagcacaagt aggactgaaa atcagtaata gttaattaaa aagaaaagga tgcgaattag
    11281 aatgtccaaa ttattttcag aatataaatt aaaagatgta acgctaaaaa acagaattgt
    11341 tatgtcacca atgtgtatgt attcagtaga aaataaagac gggattgcaa cagactttca
    11401 ttttgcacac tatgtctcga gagctgctgg tggtacaggg cttgtcatct tagaagctac
    11461 ggctgttcaa gaagtaggac ggatttctga atttgattta ggactatgga atgacgagca
    11521 agttccagct ttgaaaaaat tagtagatgg acttcattat cacggagcaa aagcaggaat
    11581 tcaattagca cacgctggaa gaaaagctgt tttaccaggt gaaatagtgg ctccttctgc
    11641 tattgctttt gatgaaaaat cagacaaacc agtagagctt acgaaagaag caattaaaga
    11701 ggttgtggct gattttaaac gtgccgctta tcgtgcaaaa gaagcgggat ttgatgttat
    11761 tgagattcat gctgctcatg gttatttaat tcaccaattc ttatcaccaa ttacgaatcg
    11821 tcgcgaagat aattacggtg gacctgctgg caatcgatat aaaattttaa gtgatattat
    11881 taaagcagtg aaggaagtat gggacggccc gattatcgtt cgagtatccg ctactgacta
    11941 tgcacatggc ggtttgcaac tagaagatca tattcctttt gcaaaatgga tgaaagcaga
    12001 tggcgtggaa ctaattgatg tgagtacagg tggtttagtt aatgtggctc caccagtttt
    12061 cccaggttat caagtgccat tcgcggatga aatccgtcgc ggggcgggta ttgcgactgg
    12121 agcgcttggg cttattacac gaggcgaaca agcggaagaa attttatgca atgaacgagc
    12181 ggatttaatt attgttggtc gtgaattatt acgaaatcct tattttgcta aagatgcagc
    12241 caaacaatta ggcgaaacaa ttgaaggacc aaaacaatat tcacgcgcgt ggaaataaat
    12301 aaaaagctgg aagttcagag tttttgaact tccagctttt ttagtagaaa ttaattaata
    12361 gttacattcc aatcataaga gcatacgcct ccagtggcat aattgtgatt atacgagatg
    12421 tctaatttat actcaccagg acttagagcg gatgtatcca ctgttataga gttgtcctcc
    12481 gcattaactg tcgtcggaag ttggactata ttagtcccga tatattctcc tgtaacttct
    12541 gggctgacta acatgttaat ttcttccatt tggaaataaa taggtaaatc aatagtacat
    12601 gtattgccct gattaatagt ttgatcagga agctctccat tttgactt
//
LOCUS       DASDXX010000068        12132 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.068, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000068 DASDXX010000000
VERSION     DASDXX010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12132
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.068"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            53..604
                     /locus_tag="U0280_001475"
     CDS             53..604
                     /locus_tag="U0280_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2271426.1"
                     /translation="MVIWSIFSNLLSLAIIIPMLYRKPKENKIEIGEKTKPLLSIVWI
                     VGGVIGLYVAQIICSVIITMISGELSNSANTELLVDLTKAAPIFLIFISILGPILEEL
                     VFRKVFFGGLSNVTNIHVAAVISSLFFGLLHGDISFLLTYFVIGLILCFLYTKTKRIV
                     VSMGAHILMNTIVLLLSLGIIGG"
     gene            606..803
                     /locus_tag="U0280_001476"
     CDS             606..803
                     /locus_tag="U0280_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4305 domain-containing protein"
                     /protein_id="HEM2271427.1"
                     /translation="MKNSLIKQSFLYFALGLVFVYFVVVRVADYGYDVLACILIIMTL
                     MDFGIGIGLIITGLKRRKKNL"
     gene            complement(837..1484)
                     /locus_tag="U0280_001477"
     CDS             complement(837..1484)
                     /locus_tag="U0280_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEM2271428.1"
                     /translation="MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVK
                     VDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLH
                     YNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEA
                     QVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE"
     gene            1794..3746
                     /locus_tag="U0280_001478"
     CDS             1794..3746
                     /locus_tag="U0280_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM2271429.1"
                     /translation="MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKST
                     LLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLESSKTIWDEMLSVFDSLRKMEADLR
                     KMELRLGEPELYNDPEKYQALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDY
                     EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLI
                     VSHDRYFLDKVVNQVYEISRTKIDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKL
                     EDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKAAHFGFQFEKQTGKDVLMVD
                     QLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGA
                     GVKIGYYDQEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLS
                     GGEKARLALAKLTLLEANVLILDEPTNHLDIESKEVLEAALIDFEGTILFVSHDRYFI
                     NRIASKIVELAPEKATVFLGDYDYYQEKLAEEKELARLDAEDRRKKGEQVEATSSVRK
                     LNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKIAELELQLTNPEVFQDHEKALEITQ
                     ELDAVKADGEKLMEEWEQISEELESM"
     gene            3771..4730
                     /locus_tag="U0280_001479"
     CDS             3771..4730
                     /locus_tag="U0280_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2271430.1"
                     /translation="MKKILIISSSIIVGLLVIITICASFYLYSYALARDNSSMNDTAT
                     TDETTATAKLAKKNREENVAWMEKQNLTQWTETSADDLKLVATYLAADKPSNTTIILA
                     HGYRGKSGKVEMAGLARMYHEKFGYNVLMPDARAHGKSEGENIGFGWPERKDYVQWID
                     QVIDKNGTDTQIALHGVSMGSSTVLMTSGEKLPKQVKSIIADCGYTSMDAELSYQLKA
                     MFHLPKFPIIPTASLINKFKEGFFFSEASAVDAVAKTDVPIFYIHGDADAFVPTNMVD
                     ELYKATNSYKEKWIVKGAEHGQAFTVDPKTYEEKVRQFLNKTM"
     gene            complement(5275..6297)
                     /gene="tsaD"
                     /locus_tag="U0280_001480"
     CDS             complement(5275..6297)
                     /gene="tsaD"
                     /locus_tag="U0280_001480"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEM2271431.1"
                     /translation="MKKNTLILGIESSCDETAASVVKNGNEIISSVVASQIESHKRFG
                     GVVPEIASRHHVEQITLVIEEALKQANVTMDDLDGIAVTEGPGLVGALLIGVNAAKTL
                     AFMHNLPLVGVHHIAGHIYANCFETEFKFPLLSLVVSGGHTELVLMKADNEFEIIGET
                     RDDAAGEAYDKVARTLGLAYPGGVQIDKLAKDGEDTFHFPRAMMDEGSFDFSFSGLKS
                     SFINTLHNLRQRGEEPNPNDMAASFQASVVDVLVSKTIRAAKQYDVKQLLLAGGVAAN
                     QGLRERLIQEVKLELPETELIIPPLALCGDNAAMIAAAGTVSFLQGKRSGFDMNANPG
                     LLLEDI"
     gene            complement(6294..6749)
                     /gene="rimI"
                     /locus_tag="U0280_001481"
     CDS             complement(6294..6749)
                     /gene="rimI"
                     /locus_tag="U0280_001481"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEM2271432.1"
                     /translation="MSLDEALLFREATVTDLKSIMNVENAAFTVPWTEAAFRNEFIIN
                     QYAYYLLAIYKEQVVGYAGVWLVLDEGHITNIAIHPDYQGNHYGEALLREMIRVAKER
                     GVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTKEDALVMWVDL"
     gene            complement(6746..7438)
                     /gene="tsaB"
                     /locus_tag="U0280_001482"
     CDS             complement(6746..7438)
                     /gene="tsaB"
                     /locus_tag="U0280_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEM2271433.1"
                     /translation="MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAV
                     LMEECGVKPTDLEKIAVAKGPGSYTGLRIGVTVAKTMAWDAGIPIVGISSLALLAENG
                     LYFPGKVVALMDARRSNVYAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFV
                     GTLTEQICVTVTEVLGERAVFAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAE
                     AESKWLESRGSE"
     gene            complement(7435..7896)
                     /gene="tsaE"
                     /locus_tag="U0280_001483"
     CDS             complement(7435..7896)
                     /gene="tsaE"
                     /locus_tag="U0280_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEM2271434.1"
                     /translation="MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFT
                     KGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDVYRLEDASADELGLEEYFYGAGV
                     SVVEWAQFVREDLPEEYLEIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK"
     gene            complement(8001..9146)
                     /locus_tag="U0280_001484"
     CDS             complement(8001..9146)
                     /locus_tag="U0280_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271435.1"
                     /translation="MMKKGILLSILLALVLVISACGESAEEKAAKTPQGKFVQTMKNG
                     MNVPDQSTYTTSFAVNDINVSSTDPSAQTMGILKDIKLSVTTSTDKKANKSEAKFNVT
                     STNNLLPISMDLDFLVDSKTGNAYIPLKTIVEPDASLLSYLDQATGGMWSKINTDYPD
                     LKNKYLSTEELTSSLTDQPEAKTAVDTKEIEAATKDLNKKAIKLVDTYFTGLEKDRFK
                     EADDGTVSVTIKNADIANLMNQVAKLMDDEKVKADLKVIAESQGSDAVTDFDSTYTEM
                     KSSLTDAAKELKENKTYLINNKLTVKSGKENSLDTLTLQTKIEDKSDASAPESISFTV
                     KTKAEEFVPIEDFPTKDEVISSEELNKIITDVTAKMYGGMDISGTNY"
     gene            complement(9280..9660)
                     /locus_tag="U0280_001485"
     CDS             complement(9280..9660)
                     /locus_tag="U0280_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271436.1"
                     /translation="MTGFKKVILPVLLVVLFLAGCNQAEVPALVLDGTVTDTSLLENN
                     NELTVNGTLTWSGEKNNYASEVLITVSSNTAVTNATTGKAMKLADIKEEDTVRAVFPQ
                     GSNITSPAPGKVSENATSLKVTPK"
     gene            complement(9755..10111)
                     /gene="crcB"
                     /locus_tag="U0280_001486"
     CDS             complement(9755..10111)
                     /gene="crcB"
                     /locus_tag="U0280_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEM2271437.1"
                     /translation="MLVNFVLVGFGAALGAMLRYGISVLVKSKWKTNFPFATFFINIT
                     GSFLLGFLVSSALGPVWQLFLGTGFMGGYTTFSTFKVESMELKWKTNYRVLFSYLGCT
                     YVFGLIAAFLGLMLGV"
     gene            complement(10101..10490)
                     /gene="crcB"
                     /locus_tag="U0280_001487"
     CDS             complement(10101..10490)
                     /gene="crcB"
                     /locus_tag="U0280_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEM2271438.1"
                     /translation="MYFLYVGVFGALGGMCRYAMNLWLGGGDFPSATLAVNLIGCFLL
                     AFLMQFLAEKSRISLVILNGIGTGFIGAFTTFSAFSVDTIQLVQSGAWLFAVSYVLAS
                     FIGGLIMVKFGRMLSNKLLNRGEHRVS"
     gene            complement(10596..11222)
                     /locus_tag="U0280_001488"
     CDS             complement(10596..11222)
                     /locus_tag="U0280_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HEM2271439.1"
                     /translation="MTEKKIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGE
                     AYQKAVQSLYAIAYTIKMSKMGETRLDGYTDFVVPPLEGFWWSEERFDLKDRDAWLWT
                     SILRQPDFVTEEVLEWAKEVAKKKKPDLDTSHVKLVRFEEGECVQMMHIGPFSEEVKT
                     VAEMHQFMETEGLHNDTGAVRKHHEIYLSDPRKVDPEKMKTILRLPVS"
     gene            complement(11219..12112)
                     /locus_tag="U0280_001489"
     CDS             complement(11219..12112)
                     /locus_tag="U0280_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM2271440.1"
                     /translation="MDVTQLKMLHNAKVISEINKGFSVDRKYQVDETYLVRVFPIDLL
                     QEREQEFKIIQALDSQTPFVPKAYDFGFIEREGYMIISYLRGEDAEIGMTRLSHSEQL
                     KAGFSAGEILREVHKIPLAIPKMNWLDFQTVKFERKVKELKELEITASFLTDTEKFVN
                     ENIARLKNRPICLQHGDFHPANIILNNKKFVGLIDFNRLEFGDPLFDLAKIGFFTTEV
                     SIPFARGNILGYIDKEEVTDFWNLYALYTAMHITSAVNWAAKNESRNFKKLMDYAAKT
                     VASHDNFQRIVPNWMNEEEFK"
BASE COUNT         3745 a         2613 c         2040 g         3734 t
ORIGIN      
        1 tattttacta agtacaacat cactttcagc agagagcgcc gcatcttatg gaatggttat
       61 ttggtcgata ttctctaatc ttttatcact tgcaattatt attccgatgc tttacagaaa
      121 gccaaaagaa aataaaatcg aaattggtga aaaaacaaag ccgcttctaa gtattgtgtg
      181 gattgtcgga ggagtcattg gcttatatgt ggcacaaatt atttgtagtg ttattattac
      241 gatgatttca ggggagttaa gtaattctgc caatacggag ttacttgttg atttgactaa
      301 agctgcacct attttcttga tctttatttc tattttggga ccgattttgg aagaacttgt
      361 ctttcgaaaa gtgttttttg gtgggctaag taatgtgacg aatattcatg tggccgcagt
      421 tattagttcg cttttctttg gattacttca cggagatatt tctttcttac ttacttattt
      481 tgtcatcgga ctaattcttt gtttccttta tacgaaaaca aaacggattg ttgtttcgat
      541 gggtgcccat attttaatga atacgattgt tttgcttttg agtcttggaa ttattggggg
      601 ataatatgaa aaattcatta ataaagcaaa gttttttata ttttgcactt ggtcttgtat
      661 ttgtatattt tgttgttgtt cgtgtggctg attatggtta tgatgtgctt gcatgtatac
      721 taattatcat gacattaatg gattttggta ttggcatcgg tctgattatc actggactta
      781 aaagacgtaa aaaaaacctg tagaaagtaa gtgttgctta ccttctacag gtttttttat
      841 tctgttttcg ctggataatt ttccaggaaa tagattaacg tttgtaattc cgttgtaaga
      901 tcgatatggt gcacacgaac ttgtttcgga acactgatac gagctggtgt aaagtttaga
      961 atacctttta catctgcttc aattaaacga tcaaccgtta cttgcgcttc gtcagctgga
     1021 actgtcagaa taactacttc cacaccgttt tcacgaacaa tttcttccat atcattcaaa
     1081 tgatagattg gaatatcttg ttgaacacta cctactttcg ctggatctac atcaaatgca
     1141 gcaacgattt tgatattatt atttttcatg aaattataat gtaataatgc tgtacctagg
     1201 ttacctacac cgattagtgc aacatttgtc tgtttgtcct ggctaagtgt tttgctgaaa
     1261 aagtcgagta tgtaagaaac gttatacccg tatcctttct tacctaatgc gccaaagtac
     1321 gaaaaatcac gtcgaatagt cgctgaatca actttcaccg cttcacttaa ttccgcagat
     1381 gatactcgtt ccttacctga ctcatctaag tatttcaagt aacgatgata taatggtaag
     1441 cgttttgctg tcgcttgtgg aattttagtt gtttcctcca tcatgccttc tgtcccttct
     1501 tcttttaatt ttttctgaag ttgaagctat tgtgaactgt acttcctttc acatgcttgc
     1561 ttatatacta taaacatttc acaaggaatg cacaaacttt ttgctcatat ctttcaagta
     1621 aggttttgtc ccgcaaaata tccggtgcag tcctcttttt atattctacg ctaaaatcac
     1681 aaataatgcg agtgttttca caatcttttt tattcaagct gtcttggcta tctcattgcg
     1741 attacttagc ttttaagata aactagtagg gagaacgttc gaggagagag attatgatat
     1801 tattacaagt tcagcaaatt tctaaattct tcggtgcaga agttatttta gataatatta
     1861 aattagaagt taaaacaggt gaccgaatcg ctctagttgg gcgaaatggt gcaggaaaat
     1921 ccactttact taaaattatc gccggcaaaa tgagttatga tggcggaact atttccaaac
     1981 caaaaagtgt ggaaattggc tatttggctc aaaataccgg gctagaatct tctaaaacca
     2041 tttgggatga aatgcttagt gtattcgatt cactgcgcaa aatggaagct gatttgcgca
     2101 aaatggagct tcgtctcggt gaaccggaac tctataatga tccagaaaaa taccaagcac
     2161 tgatgacgga ttatgatacg ttacaacata cttttaaaga aagtggcggc tatacttacg
     2221 aagcagaaat ccgttctgtt ttaaatggat tgcgttttta tccagaagat tatgaagtag
     2281 aaatcgcttc tctaagtggt ggccaaaaaa cgcggcttgc tttagccaaa ttactgcttg
     2341 ctaaacaaga tattcttgtt cttgatgagc ccaccaacca tttagatatc gaaacactag
     2401 cgtggctcga gacctattta caaaattatc atggttcgtt actcatcgta tcccatgacc
     2461 gctacttcct tgataaagtc gtgaatcaag tatacgaaat cagccgaacc aaaattgatc
     2521 actacaaagg aaattacagt tcattcgtta atcaaaaaca agcgaaacta gaacaaatgt
     2581 ggaaagagtt cgataaacaa caaaaacaga ttgccaaact agaagatttt gttgctagaa
     2641 atattgtccg cgcatcgaca acaaaacgag ctcagagtag aagaaaacaa ttagaaaaaa
     2701 tggatgtgct tggtcgcccg caaggtgatg aaaaagcagc gcattttggt ttccaatttg
     2761 aaaaacaaac aggtaaagat gttttaatgg tagatcagct aagcattggt tacgcaaaag
     2821 ataagcgcat tgcttccaac ctaacgttcg aaatgaaacg ccaagatagt ctcgcgctcg
     2881 ttggtccaaa cggaatcggc aaatcaactc tacttaaaac gcttattcgt gatatcccag
     2941 ctttaagtgg cgaattccac ttcggtgctg gcgtgaaaat tggctactac gatcaagaac
     3001 aagccaaact gacatccaac aaaactgttt taatggagct atgggatgat tatccagagt
     3061 tgaatgaagt aaacgttcgt acaacacttg gtaatttcct tttttcagat gatgatgtat
     3121 taaaaaatgt ccagtcttta agtggtggcg aaaaagcgcg acttgccctt gctaagctca
     3181 ctttacttga agccaatgtc cttattctcg atgaaccgac caaccattta gatattgaaa
     3241 gtaaagaagt tttagaagca gctttaattg attttgaagg cacgattctc ttcgtttccc
     3301 atgaccgcta ttttattaac cgaattgctt ctaaaatcgt cgaactagcg cccgaaaaag
     3361 cgaccgtttt cctaggagat tacgattatt atcaagaaaa attagcagaa gaaaaagaac
     3421 tggcacgact tgatgccgag gatcgacgca aaaaaggcga acaagtggaa gcgacctcct
     3481 ctgttcgaaa attaaactat caagaagaaa aagaacaaca aaaacttctt cgccaaagaa
     3541 aacgcaaact agaagaagta gaaaaatcca tggaagcaac ggacaaaaag attgccgagc
     3601 ttgaacttca attaacgaac ccagaagttt tccaagacca tgaaaaagcc cttgaaatca
     3661 ctcaagagct agacgccgta aaagctgacg gagagaaatt aatggaagaa tgggaacaaa
     3721 taagcgaaga actggaatcc atgtaatctg cataaaaaaa ggagcaaaca atgaaaaaga
     3781 ttttaattat ttctagttcg attatcgttg gtttacttgt cattattact atttgcgcaa
     3841 gtttttactt gtatagttat gctttagctc gtgacaattc cagtatgaat gacactgcaa
     3901 caacagacga aaccactgcc acagccaaac tagcaaagaa aaaccgggaa gaaaatgtgg
     3961 cttggatgga aaagcaaaat ctcacgcaat ggacagaaac ctcagcagac gatttgaaac
     4021 ttgttgctac ttatttagca gcagataaac catctaacac aaccatcatt ttagcccacg
     4081 gttatcgcgg taaaagcggt aaagtagaaa tggcaggtct tgctcgaatg tatcatgaaa
     4141 aatttggtta caacgtttta atgcctgatg ctagagcgca cggcaaaagc gaaggtgaaa
     4201 atattggatt tggttggcct gaacgcaaag attatgtgca gtggattgac caagtaatcg
     4261 acaaaaatgg tacggacact caaatcgcac tacatggcgt gtccatgggt agctccactg
     4321 tccttatgac aagcggcgaa aaactaccaa aacaagtaaa aagtattatc gctgattgcg
     4381 gctatacatc gatggacgcc gaactttcgt atcaactaaa agccatgttc cacttaccga
     4441 aattcccaat aatcccaaca gctagtctga ttaataaatt caaagaaggt ttctttttca
     4501 gcgaagcaag tgcggttgat gcggtcgcta aaacagacgt acccattttt tacatccacg
     4561 gtgatgctga tgctttcgtc cctacaaata tggtagacga actctataaa gctaccaata
     4621 gctataaaga aaaatggatt gtcaaaggag cagaacacgg tcaagcattc acggtagatc
     4681 caaagacata cgaagaaaaa gtacgccaat ttttaaataa aacgatgtaa aaagcagtta
     4741 tcctctagga actagatact atctgttagg aaggaaaaaa ttggcaagta ataagtaaat
     4801 gtgttattat ataaatgaaa agagagccat gcgacaacat gactctctcg caaacaccat
     4861 ttaagatggt gacagccttt tatatgattt atttaaaaac cactagctgt caggcttatg
     4921 agtggttttt attttttgtc atttttgctg ttcatgattg ttacgactaa gactgcaaaa
     4981 gcaatcatca gcgtaagact ctcgaaaaca gtcacacgtt tatcctttcc aggtaacgcc
     5041 taaaaaacaa cataaacacc acctactttc tggatgaaaa aggctggtgc accaccataa
     5101 acttatttgc atcacaatta tagcatgcaa gtatctttag aaaaagagtt ggcgcgaaag
     5161 ttgtatttta gaggcataac cagaaaattg agctaataaa aatagactgc agcgaaagta
     5221 atagttcact ttcactgcag tccgaagcgt gcggaacgaa aaatcgcgcg ctttttatat
     5281 atcttccagc aataatcccg gattcgcatt catatcaaaa ccactacgtt ttccttgtaa
     5341 gaaactcaca gtccctgcag cagcaatcat tgccgcattg tctccgcata aggctaatgg
     5401 tggaataatc agttctgtct ctggaagctc tagttttact tcttgaataa ggcgttctcg
     5461 taaaccttgg ttcgctgcca cgcctcccgc aagaagcagt tgtttcacat cgtattgttt
     5521 agcagcacga atcgttttgc ttactaaaac atccacaacg cttgcttgaa aactcgccgc
     5581 catatcgttt ggatttggct cctcaccacg ctgccttaaa ttatgaagcg tgttaataaa
     5641 ggaagacttc aatccactaa aactaaaatc aaacgaaccc tcatccatca tcgctcttgg
     5701 gaaatgaaac gtatcttcgc cgtctttggc aagtttatca atttgcacgc cgcctgggta
     5761 tgcgagacca agtgtacgtg ccactttatc ataagcttca ccagctgcat cgtcccttgt
     5821 ctccccgata atttcaaact cattatctgc tttcattaaa actagttcag tatgaccgcc
     5881 gctgacaact aatgaaagta gcggaaattt gaattcagtt tcaaaacaat ttgcataaat
     5941 atggccagca atatgatgca cgccaactaa aggtaaattg tgcataaaag cgagcgtttt
     6001 agccgcattc acaccgataa gcagcgcacc aactagacct ggaccttctg tcacagctat
     6061 cccgtctaaa tcatccatcg tcacatttgc ttgttttaaa gcttcttcaa tcacaagcgt
     6121 aatttgctcc acatgatgtc ttgatgcgat ttcaggaact accccgccaa atcgtttatg
     6181 gctctcaatt tgagaagcca ccacactcga tataatttca ttgccatttt ttacaacaga
     6241 agcagctgtt tcatcgcagc tagattctat tccaagaatt aatgtatttt ttttcataag
     6301 tccacccaca tcactagcgc gtcttctttc gtatccggat aatagttttt ccgaatggcg
     6361 ccgtcttgaa atcctaattt cttataaagc ccttgtgcta catcgttgga tacgcgaact
     6421 tctaacgtca tccgaacaac tccacgctct ttcgcaactc gaatcatttc tcgcaaaagc
     6481 gcctcaccat aatgattccc ttgataatct ggatgaatcg caatattcgt aatatgtcct
     6541 tcatctaaaa cgagccaaac acccgcataa cctactactt gttccttata tatcgcaagt
     6601 aaataatagg cgtattggtt aataataaat tcattccgaa aagctgcttc cgtccaaggt
     6661 accgtgaatg ctgcattttc gacattcata atacttttca agtcagtcac ggttgcttcc
     6721 cgaaataata aggcttcatc caaactcact cggaacccct cgattccaac catttgctct
     6781 ccgcttctgc cagttttaaa taatcaggaa caaagttgtc tgccggttct ccgtctaaat
     6841 tctctgccag ttttacaaga gaactagctc gtgagtaagt ataatctgcc tgcgcaaaaa
     6901 ccgcccgctc accgaggact tccgtcacag tcacacaaat ttgttctgtt aaggttccga
     6961 caaataaaat gggctcctcg ctagacagga attgttctag taattcagtt aacgcaatat
     7021 gtccgtccgc gataacactc tgcatttcac cttcgcttgc ttgataaacg cccgcatata
     7081 cattactacg gcgcgcatcc atcaacgcga ccacttttcc aggaaagtac aaaccattct
     7141 ctgctaaaag tgccaaagag gaaatcccga caatcggaat ccctgcatcc caagccattg
     7201 ttttcgcaac tgttacacca atacgaagcc cggtataaga ccctggacct tttgctacag
     7261 caatcttttc taagtcagta ggttttactc cacattcttc catcaaaaca gcaatcgctg
     7321 gaagcaaccg cacactatga ttttttttca aattcgttgt atattcgccg ataacgacac
     7381 cttcattaaa aagcgctatc gccatcgtat cggaagacgt atccatccca agtatcattt
     7441 cccaaaaacc tccattgcaa gttgctcata tctttctcca actggcttca caaccaattt
     7501 acgcgtattc tcatctatat gaaaaagctg aatttccaag tattcttctg gcaaatcttc
     7561 gcgaacaaac tgcgcccact caaccacgct tacacctgct ccgtagaaat actcctccaa
     7621 accaagttca tccgccgaag catcttccaa acggtacacg tccatatgat aaagtggcaa
     7681 gcgtcctttc ttatattcac gaatgattgt aaatgtcgga cttttaatca tttgcggaat
     7741 caaaagacct tcaccgagac ctttggtaaa agtagtttta cccgcgccga gatcaccttc
     7801 aagcaaaatc acatctccag ctgtcaattg ttcaccaagt tgttttgcgc gaagccttgt
     7861 ctctctttca cttgtcatta tcaattcgaa ttccattacc tcacccgtcc atcattttct
     7921 ctacatatca taccacaaag ccgcgccaaa ataaaaatca aaaaaacgca acgacctaag
     7981 tcgctgcgtc tttcgattga ttaataatta gttccactta tatccattcc gccatacatt
     8041 tttgctgtta catctgtgat gattttattt agctcttcgc tagaaataac ttcatctttt
     8101 gtaggaaaat cttcaattgg aacaaattct tctgcttttg ttttcaccgt aaagctaata
     8161 gactcaggag cgctcgcatc agatttatct tctatttttg tttgaagagt aagtgtatct
     8221 aagctgttct cttttcctga ttttacagta agtttattat taattaagta cgttttattt
     8281 tcttttaatt ctttcgcagc atctgttaaa ctcgatttca tttctgtata cgtggaatca
     8341 aaatctgtta ctgcatctga accttggctt tctgcaataa ctttaagatc tgcttttact
     8401 ttttcatcat ccattaattt agctacttgg ttcatcaagt tcgcgatatc ggcgttttta
     8461 atcgtaacgc taacagtacc atcatccgct tctttaaaac gatctttttc taagcccgtg
     8521 aaataagtat caactaattt tatcgctttt ttgtttaaat ctttcgtcgc tgcttcaatt
     8581 tctttcgtat ctacagctgt ttttgcctct ggttgatctg ttaatgaact ggttaattct
     8641 tcagtactaa gatatttatt ttttagatca gggtagtcgg tgttaatttt agaccacata
     8701 ccaccagtcg cttgatctaa ataactaagt aaagaagcat ctggctctac aatggtttta
     8761 agtggaatat aggcatttcc cgttttacta tctactaaaa aatctaaatc cattgaaatt
     8821 ggtagtaagt tattcgttga tgttacattg aattttgctt ctgatttgtt tgctttcttg
     8881 tcagttgatg ttgttacaga aagcttaatg tcttttaaaa tccccatcgt ttgagcactt
     8941 gggtcggtgc ttgaaacatt gatatcattt acagcaaaag aagttgtata tgtagattga
     9001 tcaggtacat tcatcccatt tttcattgtt tgaacaaatt taccttgtgg tgtttttgct
     9061 gctttttctt ccgcgctttc cccacaagcg ctaattacta atactaaagc taacaaaatt
     9121 gataataaaa tccctttttt catgattctc ctcctaggtg attaatacat taaaattaac
     9181 acactttaag gtctgaaaac aagagaattt acaatagttc attagtctga cacaaattcc
     9241 tataaaaaaa gcgttccttt tagaaaggca cgctcgcttt tattttggag tcacttttaa
     9301 agatgtagca ttttcagata cttttccagg ggcgggtgaa gtaatatttg aaccttgtgg
     9361 aaatacagct ctaacagtat cttcctcttt gatatcagca agtttcattg cttttccagt
     9421 ggtcgcattt gttacggcag tattgctact cactgtaatc aagacttcac ttgcgtaatt
     9481 gtttttttca ccactccacg ttaatgtccc attgactgtc aactcattat tattctctaa
     9541 caaactagta tccgttactg ttccgtcaag gactaaagca ggcacttctg cttgattaca
     9601 acccgctaaa aatagtacca ctagtaaaac cggcaatatt acctttttaa aacctgtcat
     9661 cgctctctct cgtcctctct gaagcttatc gttctttcta gcatagcatt tagcagaaat
     9721 acaggcaatt gttttcttgt ttcttaaaca attcttatac accaagcatc aaaccgagaa
     9781 aagcagctat taagccaaac acataggtac aacctagata agaaaataat acacgataat
     9841 tcgtcttcca ttttaattcc atactttcca ctttaaacgt agaaaaagtc gtatatcctc
     9901 ccataaatcc tgtacctaaa aaaagttgcc aaaccggtcc aagagcagag gaaacaagaa
     9961 aacctaataa aaatgaacca gtaatattaa taaaaaaagt cgcaaaagga aagtttgttt
    10021 tccatttact tttgaccaat acagaaattc catatcgtag catcgcacca agagccgctc
    10081 caaatcctac aagtacgaaa ttaactaaca cgatgctcac ctcgattcaa aagcttattg
    10141 ctaagcatcc gcccaaactt caccataata agcccaccaa tgaaactagc taacacatag
    10201 ctaaccgcaa ataaccatgc gccactttgc actagttgaa ttgtgtctac actaaaagcc
    10261 gagaaagtcg taaacgcgcc aataaaacca gtcccaatcc cgttcaaaat taccaatgaa
    10321 atacgagatt tttctgccaa aaattgcata agaaaagcca acaaaaaaca acctattaaa
    10381 ttaactgcta atgtcgcaga aggaaaatcc ccgccaccaa gccacaagtt cattgcatat
    10441 cggcacatac cacctaatgc gccaaaaacc cctacatata aaaaatacat ctccaagacc
    10501 ccacttcaca aaaaaactac cctgaaatat ttgtattccg ggcagtcgcc tttgtcctat
    10561 ttctactata ctataacgca aaacattcca attattcaac tcactggaag tcgaaggatg
    10621 gtcttcattt tttctgggtc cactttacgc ggatcactca aataaatttc gtggtgttta
    10681 cgaacagccc ctgtatcatt atgaagtcct tctgtttcca tgaattggtg catttccgcg
    10741 accgttttca cttcttcact aaaaggacca atatgcatca tctgcacaca ttctccttct
    10801 tcaaaacgaa ccaattttac gtgactcgta tcaagatcag gctttttctt cttagcaacc
    10861 tctttcgccc attccaacac ttcttcggtg acaaagtccg gttgtctaag aatggatgtc
    10921 caaagccacg catctctatc ctttaaatca aacctctctt cagaccacca aaaaccttcc
    10981 agcggcggta caacaaaatc cgtgtaacca tccagacgcg tctcgcccat cttgctcatt
    11041 ttaatcgtgt acgcaatcgc ataaagagac tgcactgctt tttgatacgc ctcaccgtcc
    11101 ggatcacctt tcccatccac catcaaaaaa ttcatttccg gaacaaaaat acgctctggc
    11161 ttccttttag gcgcgtagaa tttcttctct tcttttttaa aatcaatttt cttttcagtc
    11221 atttgaattc ctcctcgttc atccaattcg gcactatcct ttgaaaatta tcgtgactag
    11281 cgaccgtctt tgctgcataa tccatcaact ttttaaaatt acgagattca ttttttgctg
    11341 cccaattaac agccgaagta atatgcatcg ccgtgtatag cgcgtaaaga ttccaaaaat
    11401 ccgtaacttc ttctttatca atatagccta aaatatttcc tcgtgcaaaa ggtatactga
    11461 cctctgttgt aaaaaagccg attttagcta gatcaaataa aggatcgccg aactctaacc
    11521 gattaaaatc aattagcccc acaaactttt tgttgtttaa aataatattc gctggatgaa
    11581 aatctccatg ttgtaaacaa atcggtctat tttttaatct agctatattc tcattaacaa
    11641 acttttcggt gtctgttaaa aaagaagctg ttatttctaa ttcttttaat tccttcactt
    11701 ttcgttcaaa tttaaccgtt tgaaaatcca accagttcat ttttggtata gcaagcggaa
    11761 ttttatgaac ttctcgtaaa atttcccctg ctgaaaaacc agcttttaac tgttctgaat
    11821 gagataaacg ggtcatgcca atttctgcgt cttcgcctcg caaataacta ataatcatat
    11881 agccttctct ttcgataaag ccgaaatcat atgcttttgg aacaaatgga gtttgagaat
    11941 ctaatgcttg gattatttta aactcttgct cccgttcttg aagtaaatct ataggaaaaa
    12001 cacgaacaag gtaagtttca tccacctggt atttcctatc aacagaaaag cctttgttta
    12061 tttccgaaat cactttcgca ttatgcaaca tttttagttg tgtcacatcc ataatcagct
    12121 ctcctcctat aa
//
LOCUS       DASDXX010000069        12131 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.069, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000069 DASDXX010000000
VERSION     DASDXX010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12131
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.069"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..242)
                     /locus_tag="U0280_001490"
     CDS             complement(<1..242)
                     /locus_tag="U0280_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEM2271441.1"
                     /translation="MRKFILYWALYGLIELIMYVWLFQVIGFWPLLFIQAASSAFGVF
                     IFKRLGGNLFRNLRDGRTVAPYLLDSLCFFIAGFLL"
     gene            complement(361..2118)
                     /gene="pyk"
                     /locus_tag="U0280_001491"
     CDS             complement(361..2118)
                     /gene="pyk"
                     /locus_tag="U0280_001491"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEM2271442.1"
                     /translation="MKKTKIVCTIGPASESVDTLVQLIEAGMNVARLNFSHGDFEEHG
                     ARIVNIREASKKTGKQVAILLDTKGPEIRTNDMVGGKLEFQTGDVVRVSMTPVEGTKE
                     KFSVTYGELYDDVEIGSSILLDDGLIGLEVIEKDEANRELVTKVLNPGVLKNKKGVNV
                     PNVSINLPGITEKDAADIRFGLEQGIDFIAASFVRRATDVLEITKILEEHNATHVQII
                     PKIENQEGVDNIDEILQVSQGLMVARGDLGVEIPAEEVPIVQKELIRKCNKLGKPVIT
                     ATQMLDSMQRNPRPTRAEASDVANAIFDGTDAIMLSGETAAGDYPVEAVKMMAKIAVR
                     TEEVLVAQDKFALKLHENTDMTEAIGQAVGHTAKNLNVQTIVAATQSGHTARMISKYR
                     PKSHIVAVTFNEHVYRGLALSWGVYPRLATPVSNTDEMFDLAVKESLASGVAKQGDLI
                     IITAGVPVTESGTTNVMKIQLIGEKVVKGQGIGSKSVIGKAIVAKSNAEALEKAEEGG
                     ILIVKTTDKEMLPAFEKSAAVVVEEGGLTSHAAVVGINLGIPVIVGAKDATSLVKDGE
                     IITVDSRQGVVYNGKTATH"
     gene            complement(2401..3360)
                     /gene="pfkA"
                     /locus_tag="U0280_001492"
     CDS             complement(2401..3360)
                     /gene="pfkA"
                     /locus_tag="U0280_001492"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEM2271443.1"
                     /translation="MKRIAILTSGGDAPGMNAATRAVVRKAIYEGLEVYGINYGFLGL
                     VNGDIRKLELGSVGDLLHRGGTFLYSARYPEFATEEGQLKGIEQLKKHQIDGLVVIGG
                     DGSYHGAEALTKRGFPTIGIPGTIDNDISGTDFTIGFDTALNTVLDALDKIRDTATSH
                     ERTFIIEVMGRDAGDIALWSGLAGGAEAIIVPEESFNMDDVVDRLNKGRERGKKHSII
                     VVAEGVMSGNEFAKQLAEYGDYHARVTVLGHVQRGGSPTAFDRVLASRLGARSVELLL
                     ENRGGLAVGIRENRIVENDISEILKEKHTLDQKLFDLASILSI"
     gene            complement(3645..4601)
                     /locus_tag="U0280_001493"
     CDS             complement(3645..4601)
                     /locus_tag="U0280_001493"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEM2271444.1"
                     /translation="MANEMEFEKPILELKSKIADLKEYNETSDVDLTNEIEKLEKRLA
                     KLESSIYSNMTAWDKFQVARHPERPTTLDYISLLFEDFMELHGDRAFGDDAAIVGGIA
                     TFHGIPVTVIGHQRGKDTKDNLHRNFGMPHPEGFRKALRLMKQADKFGRPIICFIDTK
                     GAYPGRAAEERGQSEAIARNLYEMSDMKVPIISIVIGEGGSGGALALGVGNQIFMLEN
                     AVFSVISPEGAAAILWKDASQAKKAAESMRITAGDLFELGITDGIIPEVKGGAHRDLN
                     AQAEEINKTITKSLHALMAFSEEQLIEQRYEKFKKIGVYDTL"
     gene            complement(4591..5475)
                     /locus_tag="U0280_001494"
     CDS             complement(4591..5475)
                     /locus_tag="U0280_001494"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEM2271445.1"
                     /translation="MLGDLFTKPKKRKYATIPSDGTKADVPEGIMTKCPECKKIMYTK
                     ELQKNLMVCNYCGFHHPIGAKARIDMLVDEGSFEEIDASLTTANPLGFEDYMDRIEKD
                     KQKSGLNEAIVTGHATIDGNPLVIAVMDSRFRMASMGSVVGEKIFRAVEDADKTNKPF
                     VIFTASGGARMQEGMLSLMQMAKTSAAFKRFSNHGGLIITVMTHPTTGGVSASFASLG
                     DYNFAEPGALIGFAGRRVIEQTVREELPEDFQTSEFLLKHGQLDDCISRLDLQNKLSF
                     ILSIHVKTPEVGGEADGE"
     gene            complement(5693..9019)
                     /gene="dnaE"
                     /locus_tag="U0280_001495"
     CDS             complement(5693..9019)
                     /gene="dnaE"
                     /locus_tag="U0280_001495"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM2271446.1"
                     /translation="MGFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVL
                     YGVVEFYQKCLAADIKPIIGMTVTIQGYLNPINSYELILIAESTAGYHELLKIASAIQ
                     TREEGPELPQSWLRAYSSNLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKES
                     VYLSAQKENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDW
                     TTLPLAGPNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNE
                     GQNASDVLRQTAFAGLKERNLLGVEYQERLEYELKVITEMGFADYFLIVWDVIRYSRE
                     AGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR
                     DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGI
                     TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVA
                     LQLGSGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADIS
                     LEDKKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDT
                     FIARKHGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVS
                     KKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQL
                     AYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENES
                     SIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCF
                     DEFGEDRATILATIDAVLQYISLLGEDSKGMNLFAEDDDFLKKMKPRYRKTAPISIDE
                     KLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSSGKNYQVAAYVHEVKSIRTKK
                     GETMCFLTISDDSKELSAVMFPESYRKFASFAQKGEILFLQVKADTRNGELQLIINKA
                     EDLKEIKAPVRLFLKLTEPQQMEQIKPVLTRYKGDSKVIVHQAITKQTAELKNIQVTP
                     SNELQEALEELLGKENVVIK"
     gene            complement(9141..10076)
                     /locus_tag="U0280_001496"
     CDS             complement(9141..10076)
                     /locus_tag="U0280_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEM2271447.1"
                     /translation="MKSEILQQIKQYETIILHRHVRPDPDAYGSQMGLAEIIRASFPE
                     KKVYSVGNDEKSLQFLGIVDEITDEIYKDALVIVCDTANQERISDGRFNLGKALIKID
                     HHPNDDAYGDLLWVDTTASSCSEMIVAFWEMFSDELILNETAARLLYAGIVGDTGRFL
                     YPSTTEETLRLSAHLVTFPFDRPALYRELYELPKNTVKLSGYILQNFVMDENGAATVY
                     LSDTLLNEFEVDPRDASALVSCIENVEGIKAWIMFIQEGPVFRARLRSKGPVINELAK
                     EYGGGGHPLASGATLHNEEEIKEMTAKLQRICADK"
     gene            complement(10097..11410)
                     /locus_tag="U0280_001497"
     CDS             complement(10097..11410)
                     /locus_tag="U0280_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM2271448.1"
                     /translation="MATKHEQILKYIENLAVGEKISVRKIAKNLSVSEGTAYRAIKDA
                     EIIGFVSTIKRVGTLRIERKQKDSIEKLTFAEIVNMIDGQVLGGRAGLYKSLNKFVIG
                     AMTVEAMERYTDAGNLLIVGNRVSAHELALKRGAAVLITGGFDTDDEVKRLADEKELP
                     ILSTSYDTFTVATMINRAIYDQLIKKEVVFVEDILTPLETTAFLSTSDKVEDWHKMEE
                     ATGHSRFPVVNRAMRLTGMVTSKDILEKNPSISIERVMTKNPLTVGPKMSVASVAHMM
                     IWESIEVIPVVKDDLTLIGIVSRQDILKSMQMIQKQPQVGETIDDTIANQLSEKADTG
                     EEADYEFKVSPQMTNSLGTLSYGVFTQVVCDVVQQKLFSMKKRNVAIENVTMYFLKPV
                     QMDATIIIKPRILEMGRKAGKLDVELYLEGILTGKAIVACQMMER"
     gene            complement(11436..12122)
                     /locus_tag="U0280_001498"
     CDS             complement(11436..12122)
                     /locus_tag="U0280_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEM2271449.1"
                     /translation="MKISFHGQSCIKIITGDTTILVDPFISGNEKCDLKAEEQMPDFI
                     VLSHGHDDHVGDTVEIAKNSGATVICNADLASFLAVEDGLENIAPMHIGGKRQFSFGQ
                     VKLTQAFHGSQTVRDGRIVNLGFPTGIVFTIEDKNIYFAGDTGLFSDMKLIGELNPLD
                     VAFLPIGDNFTMGPEDAAIAARFLQAKLVVPMHYNTFPLIAQDPHKFVASLDEGITGK
                     VLEIGEGIEI"
BASE COUNT         3508 a         2685 c         2046 g         3892 t
ORIGIN      
        1 attaataaaa acccggcgat aaaaaagcac agactatcca acaaatacgg ggctacagtg
       61 cggccatctc gtaaatttcg gaaaaggttg ccaccaagcc gtttgaaaat aaaaacacca
      121 aaggcacttg aagctgcctg aataaaaaga agtggccaaa agccaattac ttggaataac
      181 caaacgtaca taatcaattc tattaagcca tataaagccc aataaagaat aaattttctc
      241 ataaaatcaa ctccaatact tactctctat tataacctat tttggcgtaa tcgaaaaaca
      301 atacaggcgt gcgcataaaa aaagcgtccc gcatgcggga cgcttttaga aagttaacta
      361 ttaatgtgtt gctgttttgc cgttatatac aacaccttga cgagaatcaa cagtaatgat
      421 ttcaccgtct tttacaagag atgttgcatc tttagcgcca acgatgacag gaatgcctag
      481 gttgattcct acaactgctg cgtggctagt caagccgcct tcttccacaa caactgctgc
      541 acttttctcg aatgcaggta gcatttcttt atccgttgtt ttaacgatta agattccgcc
      601 ttcttctgct ttttcaagtg cttctgcatt ggatttagca acgattgctt taccgataac
      661 agatttgctg ccaatacctt ggcctttaac aactttttca ccaattaatt ggattttcat
      721 tacgtttgtt gttccacttt cagtaactgg aacaccagca gtgatgataa ttaagtcgcc
      781 ttgttttgca acgccagaag caagagattc tttcactgca aggtcgaaca tttcatctgt
      841 gttgctaact ggagtagcta ggcgaggata aacaccccat gaaagtgcta aaccgcggta
      901 tacatgctcg ttgaatgtta cagcaacgat atgagattta ggacggtatt tagagatcat
      961 acgcgctgtg tgaccacttt gagtcgcagc aacaatagtt tgtacattta ggtttttcgc
     1021 agtatggcca actgcttgac cgatagcttc tgtcatatcc gtattttcgt gaagtttaag
     1081 tgcaaattta tcttgagcaa ctagtacttc ttctgtacga acagcgattt tcgccatcat
     1141 tttaactgct tctactggat aatccccagc agctgtttca ccggacaaca taattgcatc
     1201 tgttccatca aaaatcgcat tcgctacgtc acttgcttca gcgcgagttg gacgtgggtt
     1261 acgttgcatg gaatcaagca tttgtgttgc agtaataaca ggtttaccaa gtttattaca
     1321 ttttctgata agttcttttt gtacaatcgg aacttcttca gctggaattt caacaccaag
     1381 gtccccacga gcaaccatta ggccttgaga tacttgtaag atttcgtcga tattatcaac
     1441 gccttcttgg ttttcgattt taggaatgat ttgtacgtga gttgcattgt gctcttctag
     1501 aattttagtg atttcaagaa catctgtagc acgacgtacg aaagatgcag cgataaaatc
     1561 aataccttgt tctaaaccaa agcggatatc agcagcatct ttttctgtga ttcctggtag
     1621 gttgatagaa acgtttggta cgttaacacc ttttttattt ttaagtacac ctgggttaag
     1681 tacttttgtt actagttcgc gattagcttc gtctttttcg attacttcaa gaccgattaa
     1741 gccgtcatca agtaaaatgg aagaaccaat ttctacatca tcgtaaagtt cgccgtaagt
     1801 cacggagaat ttttcttttg ttccttcaac aggagtcata gaaacacgta caacatcacc
     1861 tgtttggaat tctaattttc cgccgaccat gtcgtttgta cggatttctg gaccttttgt
     1921 atcaagtaag atagccactt gtttaccagt ttttttcgat gcttcgcgga tatttacaat
     1981 acgcgcaccg tgctcttcaa aatctccgtg agagaaatta agacgtgcaa cgttcattcc
     2041 tgcttcgatc aactgaacta atgtgtcaac tgactcactt gcaggaccaa ttgtacaaac
     2101 aattttcgtt tttttcatgt tattactcct cctagaactt agctattcat tcgtatttat
     2161 tataaacata tcttccacat tttaccagta acaaccttgt aaaacaagta agtttgtgaa
     2221 taaaatcgca atcaacctgc atggtaacga taacaagaaa acgttttcca gattgttaca
     2281 gcatgcttaa tgaacgattt gcatttcttt accctcaaag tttattttta atacgttact
     2341 aaaatttttc acaaagaaag gctaccatgc tttgtcatgg cagccagctc ttcagccgtt
     2401 ttaaatcgac aaaatagatg ctagatcaaa taatttttga tcaagtgtgt gtttttcttt
     2461 caaaatttca ctaatgtcat tttcgacaat tctattttca cggattccaa cagctaatcc
     2521 tccgcggttt tctaacaata attctactga acgtgcacca agacggcttg caagtacacg
     2581 gtcaaatgca gttgggctac caccacgttg aacgtgtcca agaacagtta cacgtgcatg
     2641 ataatcgcca tattcagcta attgtttagc gaattcatta ccggacatta cgccctcagc
     2701 aacgacgata atactatgtt ttttaccacg ttcgcgacct ttgttcaaac gatccacgac
     2761 atcatccata ttaaaacttt cttctggaac gatgatagct tcagcaccac cagcaagtcc
     2821 agaccaaaga gcgatatcac cagcgtcacg tcccataact tcaataatga aagtacgttc
     2881 atgacttgta gctgtatcgc ggattttatc aagtgcatca agaacagtgt ttaacgctgt
     2941 atcaaaacca atagtaaaat cagttccaga aatatcatta tcaatagttc ctgggatacc
     3001 aatagttggg aatccacgtt ttgtaagtgc ttccgctccg tgataagaac catctccacc
     3061 aataaccaca aggccatcga tttgatgttt tttcaattgt tcaattcctt taagttgtcc
     3121 ttcttctgta gcgaattcag gatatcttgc ggaataaagg aatgtacctc cgcggtgaag
     3181 taaatcacca acagaaccta attctagttt acgaatatca ccattgacta gccctaaaaa
     3241 gccatagtta ataccgtaaa cttcaagtcc ttcatagatt gctttccgta caacagcacg
     3301 agtggctgca ttcattcctg gagcgtctcc tccacttgtt aaaattgcaa ttcgtttcat
     3361 tttacttacc acctcagaca atgatattgt ttttcatcac atgtgtttat tctacatgaa
     3421 aaaaggtcaa atgaaaagct tcaacagagc acttttttaa acgagaagct ttgtaaatcg
     3481 ccattttaaa tatcggtcta ttccgattcg tacgaaaaac ggctttatag cttaaataaa
     3541 cataattggt ctatacttgt gaatgggtaa actttctttt tagcgtttgg catataccaa
     3601 agaagcggat ctcctaaaat taggaaagcc gcttctttta ttgtttataa agtatcgtat
     3661 acaccgattt tcttgaattt ttcataacgc tgttctatta attgttcttc agaaaatgcc
     3721 attagtgcat gtaaagactt cgtgatagtt ttgttaattt cttcggcttg tgcatttaaa
     3781 tctcggtgcg caccgccttt tacttctgga ataattccat ctgtaatgcc aagttcaaat
     3841 aaatcgccag ctgtaatccg catagactct gctgctttct tcgcttgact ggcatctttc
     3901 cataaaatag ctgctgctcc ttctggtgaa ataacagaga aaactgcatt ttcaagcatg
     3961 aaaatttgat ttccaacacc aagagcgagt gctccaccac ttccaccttc accgattaca
     4021 atagaaataa ttggtacttt catatcgctc atttcataaa gatttctagc aatggcttca
     4081 ctttgaccgc gttcttccgc agctcgacct ggataagcac ctttcgtatc gatgaagcaa
     4141 ataattggtc ggccaaattt atctgcttgt ttcatcaaac gtagcgcttt acggaaacct
     4201 tcaggatgag gcataccaaa attacgatgt aaattatctt ttgtatcttt accacgttgg
     4261 tgaccaataa ctgtcactgg gataccgtgg aaagttgcga taccgccaac aattgcagca
     4321 tcgtcaccaa atgcgcgatc cccgtgaagt tccatgaagt cttcgaacaa aagtgaaata
     4381 taatcaagtg tcgtaggtct ttctggatgg cgagctactt gaaatttatc ccaagcagtc
     4441 atattgctat aaatgcttga ttctaactta gctaagcgtt tttctagctt ttcaatttca
     4501 ttggtcaaat ccacatcaga agtttcattg tactctttta agtcagcaat cttacttttt
     4561 aattctaaaa tcggtttctc aaattccatc tcattcgcca tccgcttcac ctcctacttc
     4621 aggtgttttc acgtgaatgc ttaaaataaa acttaattta ttttgcagat caaggcgtga
     4681 aatacagtca tctagttgtc catgctttaa taaaaactcc gacgtttgga agtcttctgg
     4741 taattcttca cgaacggttt gttctattac ccggcgtcca gcaaagccaa taagtgcgcc
     4801 tggttctgca aagttatagt ctccaaggga tgcaaaacta gcagaaaccc caccagtagt
     4861 tgggtgcgtc attaccgtaa taatcagtcc cccgtgattg ctaaatcgtt taaatgcagc
     4921 agaggttttc gccatttgca taagcgaaag catcccctct tgcatacgcg cgccacctga
     4981 agcagtgaaa ataacaaacg gtttatttgt tttatcggca tcttccacgg cacgaaagat
     5041 tttttcaccg acaacagagc ccatacttgc cattctaaaa cgagaatcca tcactgcaat
     5101 aacaagcgga ttaccatcaa ttgtagcatg accagtaaca atggcttcat ttaaaccaga
     5161 tttttgctta tctttctcaa tacgatccat ataatcttca aaaccaagtg gatttgctgt
     5221 cgttaaacta gcatcaattt cttcaaaaga gccttcatca actagcatat cgattcgtgc
     5281 ttttgcccca attggatgat gaaaaccaca ataattacat accataagat ttttttgcaa
     5341 ttctttggta tacattattt ttttacattc cggacatttt gtcataatac cttctggaac
     5401 atctgctttc gttccatcag aaggaattgt ggcatatttt ctcttttttg gttttgtaaa
     5461 caagtctcct agcaaggata accctcccca tttacgcttt ctattgtggt tattaacgat
     5521 ttttaatgtt gtaaaaataa aaaatgaata aagacatgaa acataaatca accgcatttt
     5581 cccacaagaa gacaaaatgc cagtctatcc gaattacaac tggacagact gcgcaatatt
     5641 gttttccacg ttaaactata acatactttc tataaatata gaaagtctaa gattacttaa
     5701 tgactacatt ctctttaccg agtagctctt ctaacgcttc ttgcagctca tttgatggcg
     5761 ttacttgaat atttttcagc tcagcagttt gtttcgttat tgcttgatgc acaatgacct
     5821 tactgtcgcc tttataacgc gttaaaactg gcttaatttg ttccatttgc tgtggttccg
     5881 ttaattttag gaacaatcgt acgggggctt ttatttcttt taaatcttct gctttattga
     5941 taattaactg tagctctccg ttccttgtgt ctgctttgac ttgcaaaaag agaatctccc
     6001 ctttttgtgc aaagctcgcg aatttacgat aactttccgg gaacatgacg gcgctcagtt
     6061 cttttgaatc atcactaatt gttaaaaagc acatcgtttc gccctttttt gttctaattg
     6121 atttgacttc atgtacataa gcagctactt gatagttttt gccggaagaa agatttgcaa
     6181 gtcttgtaat agcaagattt tgtaatttat tttggtagta cgatactgga tgcgctgaaa
     6241 cgtattgacc cgtgtataat ttttctttct ccagcttttc gtcaatcgaa atgggcgcgg
     6301 ttttccggta gcgtggtttc atctttttca aaaagtcatc atcttccgcg aaaagattca
     6361 ttcctttcga atcttcaccg agtagcgaaa tatattgtag cactgcatca atggttgcca
     6421 aaatcgttgc tcgatcctcg ccaaattcgt caaaacaccc agaaaataca agtgcttcta
     6481 aaacggtttc tgagagcatt ttatgtggca ttctttcaca aaaatcaaag aaatctcgga
     6541 aaggtgcttt ttttcgttcg ttaataattt ctaaaatgaa tttcgttggc actttacgaa
     6601 taacacggaa actatagcgg atagatgatt cattctccac ttggaagtag taattactat
     6661 ggttgatgct tggcgctaac atgctaattc cgtagttttt tgcttcggta atgtactggg
     6721 aaattttgtc gtcattgcca aaaacagagc taagaagcga cgacataaat gcagctggaa
     6781 aatgtgcttt taaataagct aattgaaaag cgatttttga atatgctgca gcgtgacttc
     6841 ggttgaaacc gtaattcgcg aattgaacaa tcatatcata cacttggtta gcgctagcat
     6901 ctgaataacc tctactctta gcaccttcca caaagtgaat tcgctcttcg tttaggacat
     6961 ctgctttttt cttgctgacc gctcgtctta ataaatctgc ttctccaagc gaaaatccag
     7021 ccatttggtt cgctacttga ataatttgct cttgataaac gataacgccg tatgtcactt
     7081 ccaaaatagg cgctaaatct ggatgaggat attgaatttt ttcttttccg tgttttctag
     7141 cgataaatgt atcaatttgt tccattggac ccggacgata aagcgcatct accgccacga
     7201 catcttcaaa agaagttggt tttaattttc ggagcacgcg tcgaatcccg tccgattcaa
     7261 attggaatac ccctgtcgtg tcacctgttt ggaatagttt caatgttttt ttatcttcta
     7321 aggaaatatc tgctaatgtt aacggagttt ctctagtata attgactgat ttcaaaacac
     7381 gatcaagtaa actaagattt ctaagtccta aaaagtccat tttaagtaag ccgattttct
     7441 ctaattctcc catagcaaac tgggtcaaac gtgcatctcc gctacctaat tgtagcgcga
     7501 cttgttctac gagtggcttg tcactaataa ctattccggc tgcgtgcgtt gaaatatgac
     7561 gtggcaagcc ttccagttga caagcaactt cccaaatcat ttcattttct ttagagcttt
     7621 taatatggtt ttctaaacgc ggactttctt gtagtgcttt ttgtaacgta atacctaact
     7681 gacttggaat caacttagac cattcagata atagtacaga atttagccca aaactcctcg
     7741 cagtatcgcg aatcgccgct tttgccgcta gtgttccaaa cgtgccgatt tgcgccacat
     7801 gcgcttctcc gtatttagat accacatacg aaatcacttc atcacggcga ttatctggaa
     7861 aatccaaatc aatatcgggc atcgtgatac gttctgggtt taaaaatcgt tcaaatagca
     7921 aattgtaacg aattgggtct acatccgtaa ttctgagtgc ataggaaaca agcgaccccg
     7981 ccgcagagcc ccgacctgga cctgttaaaa ttcccgcctc gcgtgaataa cgaataacat
     8041 cccaaacgat taaaaagtaa tctgcaaaac ccatttccgt aatgactttt aattcatatt
     8101 ctaaacgctc ctgatattcc acacctaata aatttcgttc ttttaatcct gcaaaggctg
     8161 tttgacgcaa aacatctgat gcattttgtc cttcatttaa tggaaatcta ggtaataaat
     8221 gctgatccaa agcaatttcg acatgacaac gatctgcaag ttcaccagtt tctaagcatg
     8281 cccgtttttc gaactccgtt tgccaatcac gttccatgtc ttcttgtgag gtaaaataat
     8341 ttggtccagc aagtggtaac gttgtccaat cgaccgttcg attatcacga atggccgtta
     8401 aaacttcttt tgcttgcgca tcttttggtt ctatatattg tacatttttc gtcgcaacaa
     8461 ccggtacatt ttcttctgca gaaaaagttt ctatttttgt gaaaagacgt ggattttctt
     8521 tttgggcaga taaataaaca gattctttac caaaaatttc gactaaattt gcataaactt
     8581 ccagtgctcc ctcgcgattc tcctccatca gaagacgttc gatttctcct ttggcaccag
     8641 gtgaaatcgc aatcaagtta ctgctataag cgcgtaacca gctttgtggc aattcggggc
     8701 cttcttcgcg cgtttgaata gcactcgcga tttttaataa ctcgtgatat ccagcggttg
     8761 attccgcaat taatatcaac tcatatgaat taattggatt taagtaacct tgaattgtca
     8821 ccgtcatccc gataattggt tttatatccg ccgctaaaca cttttgataa aactcgacta
     8881 ctccgtaaag tacattttta tccgtaattg ctaaggctgg ataatggtat tcttttgctt
     8941 tagcgattag cttatcaatc gatgctgtac ttgaaagcaa atcataagcg ctcgcaactt
     9001 gtaaatgaac aaaccccact atcctctctc ctttcaaaac tctctttttc cattatatcg
     9061 gttaagctaa aaaaaagaaa gtgtgttcgt gtttttatat aaaaataaag ccagataatt
     9121 aatccgactt tatttcctaa ttatttatcg gcacaaatgc gttgcaattt tgccgtcatt
     9181 tcctttattt cttcttcatt atgaagtgtc gcaccagaag caagcggatg tccgccgccg
     9241 ccatactctt tggctaattc attaataact ggacctttag aacgtaaacg agctctaaaa
     9301 acgggacctt cttgaatgaa cataatccat gccttgatac cttccacatt ttcgatacac
     9361 gaaacaagtg cggaagcgtc gcgcggatca acttcaaact cgtttaaaag cgtatcactt
     9421 aaataaacgg ttgcagcgcc attttcatcc atgacaaagt tttgcaaaat atatccagaa
     9481 agttttaccg tatttttcgg taattcatat aattctcggt aaagcgccgg acgatcaaat
     9541 ggaaatgtca ctaaatgcgc agataaacgt aaagtctctt ccgttgtgct tggatacaag
     9601 aagcgcccag tatcaccaac aattcccgca taaaggagtc ttgcagcagt ttcattcaaa
     9661 attaactcat ccgaaaacat ttcccaaaaa gcgacaatca tttcactaca agaagaagcc
     9721 gtcgtgtcca cccaaagtaa atcaccatac gcatcatcat ttggatggtg gtcaattttt
     9781 ataagtgctt taccaaggtt aaaacgcccg tctgaaatcc gttcttggtt cgcggtgtca
     9841 cacacaatca caagcgcatc tttataaatt tcatccgtta tttcgtccac tataccaaga
     9901 aattggagcg acttttcatc atttccaact gaatagactt ttttctcagg aaagctagcc
     9961 cggataattt ccgcaagccc catttgcgat ccgtatgcat ctgggtcagg ccgtacatgt
    10021 ctatgcaaaa taatcgtttc atattgtttt atttgttgta aaatctcact tttcattgtt
    10081 tcgcctctat ttctttttaa cgttccatca tttgacaagc gacaatagct tttccggtca
    10141 aaattccttc taagtaaagc tctacatcaa gcttaccggc cttacgcccc atctccaaaa
    10201 ttcgcggttt aataataatt gtcgcgtcca tttgaacagg ttttaggaaa tacatcgtta
    10261 cattttcaat cgctacattc cgttttttca tagaaaatag tttttgctgt acgacgtcac
    10321 aaaccacttg tgtaaataca ccatacgata atgttccgag tgaattagtc atttgcgggc
    10381 taactttaaa ttcataatct gcctcttctc cagtatctgc tttttcagaa agctgattcg
    10441 caatcgtatc atcaattgtt tcaccgactt gcggttgttt ttgaatcatt tgcatagatt
    10501 ttagaatatc ctgtctgcta acaatcccga ttaatgttaa gtcatcttta acgactggaa
    10561 ttacttcgat actctcccaa atcatcatgt gcgccaccga ggctacactc atttttggtc
    10621 ccacagttaa cggatttttc gtcattactc gttcaattga aatacttgga tttttttcta
    10681 gaatatcctt acttgtaacc atcccagtca gtcgcatcgc tcggttaact acaggaaatc
    10741 gactatgacc tgtcgcttct tccattttat gccaatcttc cactttatca gacgtagata
    10801 aaaatgcagt tgtttctaat ggggtcaaaa tatcctccac aaatactact tcttttttaa
    10861 ttaattggtc ataaatcgcg cggttaatca tcgttgcaac tgtaaacgta tcatacgaag
    10921 tcgataaaat gggcagttct ttctcgtccg ccaaccgttt cacttcgtcg tccgtatcaa
    10981 acccaccagt aatcagtacc gcggcgccac gtttcaaagc aagttcatga gcgctcactc
    11041 tatttccgac aattaataag tttcctgcat cggtatagcg ttccatcgct tccactgtca
    11101 tcgccccaat aacaaactta ttaagcgatt tataaagccc cgcacgaccg cctagcactt
    11161 gcccatcgat catattcaca atctcagcaa aagttaattt ttcgatacta tctttttgct
    11221 tccgttcaat tcgaagtgtt cccactcgtt taatagtaga aacaaaccca atgatttctg
    11281 catctttaat agcccgataa gcagttccct cgcttacaga caagtttttc gcgatttttc
    11341 gtacagatat tttttctcca actgcaagat tttcaatgta ttttaaaatc tgttcatgtt
    11401 ttgtggccac gacacgttca cccattccta ttttgttaga tttcgatacc ttccccaatt
    11461 tcaagtactt ttccagttat cccctcatca agcgatgcaa caaatttgtg cggatcttgc
    11521 gcaatcaaag gaaacgtatt gtaatgcatt ggaacaacta atttcgcttg taaaaaccgt
    11581 gccgcaatcg ccgcatcttc tggtcccatg gtaaaattat ccccaatcgg caagaaagca
    11641 acgtctagcg gatttaattc accaattaat ttcatatcag aaaacaaacc agtgtcccct
    11701 gcaaaataaa tatttttatc ttctatcgta aatacaatcc cagttgggaa accaaggtta
    11761 acaatgcgac catctcgaac cgtctgcgat ccgtgaaaag cttgcgtcaa cttcacttgg
    11821 ccaaaactaa actgtctttt cccgccaata tgcattggag cgatattttc aagcccatcc
    11881 tctactgcta aaaaagaagc caaatccgca ttacagataa cggttgctcc agaattctta
    11941 gcaatttcaa ctgtatcacc gacatgatca tcatgtccat gcgacagaac gataaagtca
    12001 ggcatctgct cttccgcttt taaatcacat ttctcattac cagaaataaa tggatccacg
    12061 agaatagttg tatccccagt aattatttta atacaagact gaccatgaaa tgaaatcttc
    12121 atgttaaaaa a
//
LOCUS       DASDXX010000070        12126 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.070, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000070 DASDXX010000000
VERSION     DASDXX010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12126
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.070"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            31..2199
                     /locus_tag="U0280_001499"
     CDS             31..2199
                     /locus_tag="U0280_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2271450.1"
                     /translation="MNCEKCNQNPATIQLYMNINGKRVEMPLCASCYAEVRNQANFGA
                     NEFPGASGSPFDDIFRQLSGAASQANREQRSQAQVQTQTAGGGNGLLDEFGTNLTDMA
                     KNEQLDPVIGRDKEIKRVIEILNRRNKNNPVLIGEPGVGKTAVVEGLANAIVAGEVPS
                     KLMNKEVILLDVASLVSGTGIRGQFEERMKQLIKELQERKNTILFIDEVHTIVGAGSA
                     EGSMDAGNILKPALARGDLQMIGATTLKEYRTIEKDAALERRFQPVTVSEPSTKETLT
                     ILNGLKPKYEDFHEVVYSPEALTAAVELSARYIQDRHLPDKAIDLMDEVGSKYNLSIE
                     KLDENTVSERVARLEDEKNQALQMEDYEKAAKVRDEITRLEENKTNNSFSERPVIQAS
                     DIQAIIEEKTGIPVGRLQEDEQSKMKNLESNLTGKVIGQEDAVRKVAKAIRRSRVGLK
                     SKNRPIGSFLFVGPTGVGKTELGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSP
                     PGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVS
                     FKDTVIIMTSNAGATDTEASVGFNTTTESKLEKGSDILAKLGAYFKPEFLNRLDSVIE
                     FKSLEKDDLVQIIDLMLVDLNEMLAQEDVTIDVSKEVKEHLIDLGYDPKFGARPLRRT
                     IQEHLEDAIADSLIEQPEAKHLVATLNENKEITITEQVTV"
     gene            complement(2215..2694)
                     /locus_tag="U0280_001500"
     CDS             complement(2215..2694)
                     /locus_tag="U0280_001500"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM2271451.1"
                     /translation="MLKQQKSSPVGDLFITIDEKWIRNISYDEPKNWELLEGTIIEKE
                     LFQALTIQLDDYFEGKREHFDLPVLLKGTDFQQKVWQALSEIPYGVVVSYKDIAISAG
                     SPKAVQAVGQANRANPIPIIIPCHRCVKSNGELGGYNGADVDKKQYLLALEKGLSLS"
     gene            2880..3911
                     /locus_tag="U0280_001501"
     CDS             2880..3911
                     /locus_tag="U0280_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM2271452.1"
                     /translation="MEQTALKRESYFDNAKFILIFLVVFGHFLQTFIADYAGVRVLYI
                     YIYTFHMPAFVLISGFFAKSFGKPGYLKKTMKKLILPYVFFQLIYSIFYYFLLSKDNL
                     SIQFLDPEWSLWFLLSLFFWNIMLFIFAKIKPWKSICIALFVGLVAGYFDIIGGYLSL
                     SRTLVFFPFFLVGYFLKKEHFYYLKTHFVMILGGIFIVLLLSFITFHPNLNDKWFLGS
                     KPYANFVEVKSLGLFIRALVYLISFGSIAAFFSFIPRKRLFFTKWGKNTLYVYLLHGF
                     FIKFFREGSQTDFQYSPSTFLLLFVVTFVLTVLLSSRLVKIFVQPVIELRVSMLRDVF
                     SRLTKRESY"
     gene            3941..4309
                     /locus_tag="U0280_001502"
     CDS             3941..4309
                     /locus_tag="U0280_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2271453.1"
                     /translation="MGSRKPEIIIGLIGSIIGILVGFWIINYGDSVTDYIQTFTYLPG
                     ELGNELANLGWITLIASVVALIASLLIKSAPRGWGVILVIIGIVLFFVIGTAWIISGI
                     LITLTGLMGIFRRPVPKSKY"
     gene            complement(4389..5714)
                     /locus_tag="U0280_001503"
     CDS             complement(4389..5714)
                     /locus_tag="U0280_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEM2271454.1"
                     /translation="MTPVQVIIAYYFIAVTISTIVLSLPFTLQKGVKVSFIDTLFTAA
                     SSVSVTGLATVDVSQTYSTAGIWVLMAIFQIGGLGVMMISTFFYLILKRRIGLKQRQL
                     IMTDTNQFTMSGMVRMLREILVLIFGIELIGALILGIYFIPLYPNFWDAMFQGLYNSV
                     SLVTNAGVDITGKSLMPFANDYFVQFISILLIIAGAIGFPVLLETRRFLFEKNTLIPF
                     RFSLFVKVTTLTYFVLLIVGGLLIWLFEYHHFFSGKSWDFGFFNSMFLSATSRSAGLQ
                     TIDSGALSISTLLLVSFLMFIGASPSSVGGGIRTTTFAITILFIYSVIRGRKHVYIFG
                     RELHQEDVRKSLAVTLVAGFLSISAIVVLMQTETASLIAVIFEVFSAFGTTGLSVGLT
                     PDLSTPGKIIIIALMFIGRVGIMYSMLSLRNKNQPKNAIRLPKEKIITG"
     gene            complement(5767..6534)
                     /locus_tag="U0280_001504"
     CDS             complement(5767..6534)
                     /locus_tag="U0280_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEM2271455.1"
                     /translation="MDVSIWGEYALVFLVLVVLEGILSADNAVVMAVIVKGLPHDKQR
                     KALFYGLVGAFVFRFIALFLISFLVKIWEIQAIGAVYLLYLAIKHMWRLKKGKQEEVK
                     EASEAKSTSFWGVVARVELTDIAFALDSMLAAAALVVTLPDLGNFDIGGMNGGQFIVM
                     FLGGIAGLVVIRFAATQVVKLLERYPTLETAAFLIVGWVGVKMAVLTLAHPSVAIIPE
                     DFPDSAVWKLTFWSVMIIIGLGGYIIARKKEKKTKRV"
     gene            complement(6637..7404)
                     /locus_tag="U0280_001505"
     CDS             complement(6637..7404)
                     /locus_tag="U0280_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEM2271456.1"
                     /translation="MDTAMILEYGWVLLVLIGLEGILAADNAVVMAVMVKHLPDKQQK
                     KALFYGLMGAFVFRFGALFLISFLANVWQVQALGAAYLLYIAISHIWKHAKGKDGEKE
                     KKEKAGSGFWMTVLKVEIADIAFAIDSMLAAVALAITLPETGWGHIGGIDTGQFAIMF
                     LGGLVGLIIIRFAATQFVKLLKSYPSLETAAFLIVGWVGVKLVIYTLAHPSLGVIPHS
                     FPESTLWKLIFWGVMILIIIWGWFVSYRSKKKAETTK"
     gene            complement(7686..9047)
                     /locus_tag="U0280_001506"
     CDS             complement(7686..9047)
                     /locus_tag="U0280_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2271457.1"
                     /translation="MKHSDNYYLTKASIPKAIAHLSIPMMLGMSVGVIYNLINAFFIG
                     LLHDTSMLTAVTLGLPMFTVLMAIGNMFGVGGGTYISRLLGKEEGIKAKQVSAFVLYG
                     SLVLGIICAIILGFLINPVTHFLGADATSFLHTKNYTLALLICSPFIIANFALEQVVR
                     SEGASRVSMNGMIIATVVNLVFDPLLILYFDFNVVGAAVSVGLASLFSLIYYAWYLEK
                     KSEYLSIRFKWFKATKEIVQNVFKIGVSELLLSLFLIVTTLVLNHYSMIYGEGVVAGF
                     GVALRVVQLPEFICMGLYMGIIPLLAYNYGSGNIARFEKAIRATAISIGLIVLLLSSL
                     VFLFRFQVMHLFSDSQSVITLGVHIMVAMLISSLFSGFTGLFTSTFQAIGKAIPATIM
                     SVSQGIIFIPVIILGQHYFGLMGVIWSLTATEILTCIIGVTLFTIHNVKIASSAKTKD
                     LAV"
     gene            complement(9100..9525)
                     /locus_tag="U0280_001507"
     CDS             complement(9100..9525)
                     /locus_tag="U0280_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2271458.1"
                     /translation="MRREKTMDTLIRSIMIKSKRKMDAKVAQFGLTTQQARVLGFLND
                     NAANEIIQKDLQRIFQTRGASITSLIQGLEKKELISRKPSIRDGREKVVTLTEEGKRI
                     VDEFNESFPREDDKAKKILSADEYKIFIDLLSKIDDNTE"
     gene            complement(9633..11201)
                     /locus_tag="U0280_001508"
     CDS             complement(9633..11201)
                     /locus_tag="U0280_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEM2271459.1"
                     /translation="MSQDLQKEVASRKTFAIISHPDAGKTTITEQLLLFGGVIRSAGT
                     VKGKKSGKFATSDWMEIEKQRGISVTSSVMQFDYNGSRINILDTPGHSDFSEDTYRTL
                     MAVDSAVMVIDAAKGIEAQTLKLFKVCRMRGIPIFTFINKMDRQGKMPLELLAELEEV
                     LGIESYPMNWPIGMGKELAGLYDRYHRVIEQYRSEEDERFLPLGEDGDLKEAHAIQKS
                     LYYDQALEEIMLLDEAGNDFSRERIIAGEQTPVFFGSALTNFGVETFLRTFVDFAPSP
                     SSHESNEGVIEADNPKFSGFIFKIQANMNPAHRDRIAFIRICSGEFERGMNVTLTRTG
                     KSMKLANSTQFMADDRETVNRAVAGDIIGLYDTGNYQIGDTITNGSKKLEFEKLPQFT
                     PELFMRVYAKNVMKQKHFHKGVEQLVQEGAIQLFKTWRTEEYIIGAVGQLQFEVFEHR
                     MRGEYNSEIRMEPIGKKIARWVKEEDADEKLSTARSMLVKDRFDQPLFLFENEFAINW
                     FNDKNPDIELTSLL"
     gene            complement(11283..>12126)
                     /locus_tag="U0280_001509"
     CDS             complement(11283..>12126)
                     /locus_tag="U0280_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271460.1"
                     /translation="NLKIYFRDRTAVFMSLLTVLIIIGLYAIFLGNNMEEMFKQASGK
                     TIGIQELVNTWVIAGILSITPVTVSLAVFSLKVHDEELSIARSFAITPASRWRIVISY
                     IVSGLVASFLLSVVTLFVGEMYIWLTGGAFLPFESWIRLIGVILINVFCCSSMMFFIA
                     SLVKKASAFSSVSTIVGTVIGFIAGIYLPIGSLPATVQTAMKCFPFTYGASTIREIMT
                     KEPLQQVFAGNTQAMDATKEMIGITIYWSDKTVTTGLSLLILSAFAVVFGVLSVILMK
                     RQTK"
BASE COUNT         3955 a         2550 c         2017 g         3604 t
ORIGIN      
        1 tttctcattt ttaaaaggag gaaattatat atgaactgtg aaaaatgtaa tcaaaatcca
       61 gcaacaatcc aactatatat gaatattaat ggcaagcgtg tagaaatgcc gctttgtgcc
      121 tcttgttatg cagaagttag aaatcaagca aactttgggg cgaatgagtt cccaggagca
      181 agcggttccc cgtttgatga tattttccgt caattgagtg gtgctgctag tcaagcaaac
      241 cgtgaacaaa gaagccaagc acaagtacaa acacaaactg ctggtggcgg caatggttta
      301 ctagatgaat ttggaacaaa cttaacagat atggcgaaaa atgagcaact cgaccctgtc
      361 atcggtcgtg acaaagaaat taaacgcgtc attgaaatat taaaccgccg taataaaaat
      421 aatccagtct taattggtga accaggtgtt ggtaaaacag ctgtcgtcga aggacttgca
      481 aatgcgattg tcgcaggaga agttccaagc aaattaatga acaaagaagt tatcttatta
      541 gatgtcgctt cacttgtttc tggaacaggg atacgcggtc aatttgaaga acgcatgaaa
      601 caactgatta aagaactaca agaacgtaaa aacacgattc tctttattga tgaagtgcat
      661 acgattgttg gggcaggttc cgcagaaggc tcgatggatg caggaaacat tctaaaacca
      721 gctctagctc gtggcgattt acaaatgatt ggtgctacta cactaaaaga ataccgcaca
      781 atcgaaaaag atgccgcact tgagcgccgt ttccaaccag taactgtaag cgaaccatcc
      841 acaaaagaaa cgctaactat tttaaatggt ttaaaaccaa aatatgaaga tttccatgaa
      901 gtagtttatt caccagaagc actaacagca gcagttgaat taagcgctcg ttatatccaa
      961 gatcgtcatt tgccagataa agcaattgat ttaatggatg aagttggctc gaaatataat
     1021 ctatccattg aaaaactgga cgaaaatacg gtgagcgaac gtgttgcccg tttagaagat
     1081 gaaaaaaatc aagctcttca aatggaagac tacgaaaagg cagccaaagt tcgtgatgaa
     1141 attactcgct tagaagaaaa taaaacaaat aactccttct cagagcgtcc agtcatccaa
     1201 gcatccgaca tccaagcaat tattgaagaa aaaacaggta ttccagtagg acgcttacaa
     1261 gaagacgagc aatctaaaat gaagaactta gaaagtaact taactggaaa agtcattggt
     1321 caagaagatg ctgtaagaaa agtagctaaa gcaattcgtc gtagccgtgt tggcctcaaa
     1381 tcaaaaaatc gcccaattgg ttccttccta tttgttggac caactggtgt cggaaaaaca
     1441 gaacttggac gcacgctagc tcgtgaattg tttggtacta gtgaagcgat gattcgttta
     1501 gacatgagtg aattcatgga aaaacacagc gtctctaaat taatcggttc ccctcctggc
     1561 tatgttggtc acgaagaagc tggacaatta acagaaaaag ttcgtcgcaa tccgtatagc
     1621 atcattttgt tagacgaaat cgaaaaagca catccagacg ttcaacatat gttcctgcaa
     1681 attttagaag acggtcgact aactgattca caaggacgta cagtgagctt taaagataca
     1741 gtcatcatta tgacaagtaa cgctggcgca actgacacag aagcttcggt cggctttaat
     1801 acaacaaccg aatcaaaact tgaaaaaggt tctgacatct tagcaaaatt aggcgcatac
     1861 ttcaaaccag aattcttaaa ccgtctagac agcgtcattg aatttaaatc cctagaaaaa
     1921 gacgatttag tacaaatcat cgacttaatg ctcgttgatt taaatgaaat gctcgctcaa
     1981 gaagatgtga caatcgatgt ttctaaagaa gtaaaagaac atttgattga ccttggttat
     2041 gaccctaaat tcggagcacg tccactacgc cggactatcc aagaacacct agaagatgcg
     2101 attgccgaca gtctaattga acaaccagaa gcaaaacatc ttgttgcaac ccttaacgaa
     2161 aataaagaaa ttactataac agaacaagta acagtgtaat aaaaaaggct tgagttaact
     2221 taaactcaag cctttttcta atgcaagtaa atattgtttc ttatctacat ccgccccgtt
     2281 atagccccca agttctccat tacttttcac gcatctgtga catgggatga taatcggaat
     2341 tgggttagcg cgattcgctt gtcctactgc ttgcacagct ttagggctac ctgctgaaat
     2401 cgcaatgtct ttataactca caacaacccc atacggaatt tcactcaatg cttgccaaac
     2461 cttttgttga aaatcggttc ctttaaggag caccggcaaa tcaaaatgct ctctcttgcc
     2521 ttcaaaatag tcatctagtt ggatagttaa tgcttgaaaa agttcttttt ctattatagt
     2581 tccttctaga agttcccaat tttttggctc gtcatacgaa atattcctaa tccacttttc
     2641 atctatagtt ataaataaat cacccactgg cgatgatttt tgttgtttta gcattctgtc
     2701 gctcctctcc ccttaagtta ttattttaaa gatagcactt ccctcttcca ttcgcaacta
     2761 gctgtcatgc cctgttaata tttgatactt tttgttactt aactgttgga taagcgttac
     2821 agaattcagg gtaaaataaa caatagtttg tcaacataga atagaaagga ctgtttttta
     2881 tggaacaaac cgccttaaag cgggaaagtt atttcgacaa tgccaagttt attctaattt
     2941 ttctagttgt tttcggacat tttctccaaa catttatcgc ggattatgcg ggtgttcgtg
     3001 tgctttatat ttatatctac acgtttcaca tgcctgcttt cgtgctaata tccggatttt
     3061 tcgctaaaag ttttggtaag cccggttatt taaaaaagac gatgaaaaag ctcattttac
     3121 cttatgtgtt ttttcagcta atatatagta ttttttatta ttttctttta agtaaagaca
     3181 atctttctat ccaattcctt gatcctgaat ggtcactttg gtttttacta agtttgtttt
     3241 tctggaatat aatgttattt atttttgcaa aaataaagcc ttggaagtcg atttgcattg
     3301 ctctcttcgt tggattggtt gctggctatt ttgatattat tggggggtat ttgagtttat
     3361 ctcgaacact tgtttttttc ccgtttttct tagttggcta ttttttaaag aaagaacatt
     3421 tttattacct taaaacgcat tttgtcatga ttctcggggg cattttcatt gttttacttc
     3481 tatcatttat tacatttcac cctaacttaa atgataaatg gtttttaggt tctaagcctt
     3541 atgcaaactt tgtggaagta aagtcgttag gtctattcat tcgcgcactt gtctacttga
     3601 ttagttttgg ttcgattgcg gcttttttca gttttattcc tagaaagagg ttatttttca
     3661 ctaaatgggg taaaaatacg ttatatgttt atttgttgca tggcttcttt attaagtttt
     3721 ttcgtgaagg tagtcaaact gactttcaat atagcccatc aacattttta cttctattcg
     3781 tcgttacttt tgttttaacg gtattattat caagtcgatt ggtaaaaata ttcgttcaac
     3841 cggtaatcga acttagggta tctatgctgc gagatgtgtt tagccgctta acaaaacggg
     3901 aaagttatta aacgtataga tagaaaaagg aggttgtatt atgggttcaa gaaaaccaga
     3961 aattattatc ggattaattg gctctatcat tgggattcta gttggctttt ggattattaa
     4021 ttatggagat tcagtcacag attatataca aacatttact tatttacctg gtgaattagg
     4081 taacgagtta gcaaatctag ggtggattac attaatcgca tctgtagttg cattaattgc
     4141 ttcccttcta atcaaatcag ctccacgtgg ttggggtgtt atcttagtaa ttatcggtat
     4201 cgtgctcttc ttcgttatcg gaactgcttg gattatctcc ggaatcttaa tcactttaac
     4261 tggtttaatg ggtattttca gacgccccgt tccaaaatca aaatattaaa aatcacctct
     4321 tggtcatttt gatcaagagg ttttttcatg gacaaaaaag ccattctgca atcagaatgg
     4381 cttttatatt aacctgtaat aattttctct tttggtaaac gaatcgcatt tttaggttga
     4441 tttttatttc ttaaactcag cattgagtac ataataccaa cgcgcccaat aaacattaat
     4501 gcaataataa taattttacc cggcgtagat aaatctggtg tcaaacctac agaaagccct
     4561 gtagtaccaa acgccgaaaa gacttcaaaa atgacggcaa ttaacgaggc ggtctctgtt
     4621 tgcattaaaa cgactatggc cgatatactc aaaaaccctg ctactaacgt caccgcaagc
     4681 gatttccgca catcctcttg atgaagctca cgaccaaaaa tgtacacatg tttccgacct
     4741 cggataaccg aataaatgaa taaaatcgta attgcaaaag ttgtcgttcg aatcccacca
     4801 ccaacagaac ttggcgatgc tccaataaac attaagaagg aaacgagcaa caacgtagag
     4861 attgacaacg ccccactatc aatcgtttgt aagcctgcgc ttcgtgatgt tgcagataag
     4921 aacattgaat taaagaaacc gaaatcccaa cttttcccac taaagaaatg atgatattca
     4981 aacagccaaa taagtaaacc acccacaatt aaaagcacaa aataagttag cgtcgttact
     5041 ttcacgaaaa gggaaaagcg aaacggaatt aacgtatttt tttcaaataa aaatctacgt
     5101 gtttcaagca atacaggaaa acctatcgca cctgcaataa tcaacaaaat cgaaataaat
     5161 tgaacgaaat aatcattggc aaagggcatt agcgatttac cggtgatatc aacccccgca
     5221 ttggttacga gtgaaacaga attatataat ccttggaaca tcgcgtccca aaaattcgga
     5281 tacagcggaa taaagtaaat ccctaaaatc aaggctccaa ttaactcaat accgaaaata
     5341 agcactagaa tctcacgaag catccggacc atcccgctca ttgtaaattg gttagtatcc
     5401 gtcataatta attgacgttg ttttaagcca atccgtcttt ttaaaatcaa atagaaaaac
     5461 gtactaatca tcataacacc aagtccacca atttggaaaa tcgccattaa gacccaaatt
     5521 ccagcagtac tataagtctg gctaacgtct actgttgcaa gcccggtaac actaaccgaa
     5581 ctcgctgctg taaatagagt atcaataaac gacaccttga cccctttttg tagagtgaac
     5641 ggtaagctta agacgatggt agaaatcgta accgcaataa aataatacgc gataattact
     5701 tgaactggtg tcatacgtgc taacaccagt tttaatcttc tgcgcaattt tacttcctga
     5761 tcatattcaa actcttttgg ttttcttctc tttttttctc gcaatgatat aaccacccaa
     5821 acctattatt atcataaccg accagaatgt cagcttccaa accgctgaat ccggaaaatc
     5881 ttctggaata attgctacag aaggatgtgc tagcgttaga accgccattt tcacaccaac
     5941 ccaaccaaca attaaaaacg ctgctgtttc aagtgtaggg taacgctcta ataatttaac
     6001 cacttgtgtg gctgcaaaac gaattacgac aagtcctgcg ataccaccaa ggaacatcac
     6061 gataaattgc ccaccgttca ttcccccaat atcaaaattc cctaaatctg gcaaagtaac
     6121 tactaatgct gctgcagcta acatggaatc cagtgcaaaa gcaatatctg tcaattccac
     6181 acgagctact acaccccaaa aggaagttga tttggcttct gatgcttctt tgacttcttc
     6241 ttgtttacct tttttaaggc gccacatgtg cttaattgct aagtacaata aataaaccgc
     6301 gccgatagct tgtatttccc aaatttttac taaaaatgaa attaaaaata gtgcaataaa
     6361 acgaaaaaca aaggcaccta ctaacccata aaacaaggct tttcgttgtt tatcgtgcgg
     6421 taaaccttta acaattactg ccataactac ggcattatct gcggaaagaa ttccttcaag
     6481 tactactaaa acaaggaaaa ctaacgcata ttcgccccaa atagaaacat ccattcctca
     6541 ttcaccatcc ttctactcta tcataaaatt gtgttttcag catctggttg tatgtaaaac
     6601 cagaagtaca aatatgcact tctggtctat taaaaattat ttagttgttt ctgctttttt
     6661 cttactacga taggaaacga accatcccca tataataata agaatcatca caccccagaa
     6721 aattaatttc cacagtgttg actcagggaa gctgtgtgga attaccccaa gacttggatg
     6781 agctagtgta taaataacaa gcttcacgcc tacccaacca acaattaaaa atgcggctgt
     6841 ttcgagactc ggataacttt ttagtaattt aacaaattgt gttgctgcaa aacgaataat
     6901 aatgaggccg acaagtccac ctaagaacat aatcgcaaat tgcccggtat caattcctcc
     6961 aatgtgtccc catcctgttt ctggaagagt aatggcaagt gctactgccg caagcatgga
     7021 atcaatcgca aacgcaatat cggcaatctc tacttttaga actgtcatcc aaaaaccaga
     7081 gccagctttt tccttcttct ctttttctcc gtcttttcct tttgcatgtt tccaaatgtg
     7141 actaatagcg atatatagta aatatgcggc accaagcgct tgaacttgcc aaacatttgc
     7201 caaaaaggaa attaagaata atgcgccaaa acggaaaaca aaggcaccca tcaatccgta
     7261 aaataacgct tttttctgtt gtttatctgg gagatgtttg accatcacag ccataaccac
     7321 tgcattatct gctgctaaaa tcccctcaag accgattagg acaagtaaca cccaaccgta
     7381 ctctaaaatc attgctgtat ccactaattc ttttcctcct ttgttctatt aaaatgtcaa
     7441 agatctccta ttttgaagaa acaaaaaagc gagacctgcc cgtaaaggca aaggtctcgc
     7501 taacatttaa aattaaatgt gataaaaccg atgatatctc tatcatgtaa tgacgacttt
     7561 atcctgatta aaaagctaat cagcgctact cccctctgac atttgtcaaa gaacgatata
     7621 tgattaccta gagaataata ccataatata gaacttctcg tcaactaatt tttctcacaa
     7681 actttttaaa cggctaagtc tttcgttttt gcgctactag ctattttgac attgtggatt
     7741 gtgaatagtg tcacaccaat gatacatgtc agaatttcag tcgctgttaa ggaccaaatc
     7801 acacccataa gtccgaaata atgttgtcct aaaatgatga ctgggataaa aatgatgcct
     7861 tgtgaaacag acataatcgt agccggaatc gctttcccaa tcgcttgaaa agtactcgta
     7921 aacagccccg taaatccact gaaaagagaa gatatcaaca tcgcaaccat aatatgcaca
     7981 ccaagcgtta tcacactttg actgtcacta aatagatgca tcacttggaa acggaagagg
     8041 aataccagac tcgaaagtaa gagcacaata agcccgatac taattgcagt agcccgtatt
     8101 gctttttcaa accgcgcaat attacccgaa ccgtaattat aagctaacag cggaattatc
     8161 cccatgtaaa gtcccataca aataaattca gggagctgca ccacccgaag cgccacgcca
     8221 aaacctgcaa ctactccttc cccgtaaatc atcgaataat gatttaaaac gagtgttgtc
     8281 acaatgagga ataacgataa aagcaactct gaaacaccaa ttttaaacac attttgaacg
     8341 atttcttttg ttgctttaaa ccatttaaaa cgaatcgata aatactcact tttcttctct
     8401 aaataccaag catagtaaat cagcgaaaat aaacttgcta atcctaccga aactgcggcc
     8461 cccaccacat taaaatcaaa atacaaaata agcaatggat caaatactaa attaacaact
     8521 gtagcaatta tcattccgtt catagaaacc cgcgaagctc cctcagaccg aaccacctgt
     8581 tctaaagcaa aattcgcaat aataaacggg ctacaaatta aaagcgccaa cgtataattt
     8641 ttcgtgtgta aaaagctcgt tgcatctgcc ccaagaaaat gagtaactgg attaatcaaa
     8701 aagccaagta tgatggcgca gataattcct aatactaaac ttccatataa aacaaaggcg
     8761 gatacttgtt ttgcctttat tccctcttct ttcccaagca agcgcgaaat atacgttcca
     8821 ccacctactc caaacatatt accaatcgcc atcaaaacgg tgaacatcgg taatccaagt
     8881 gtcaccgcgg ttaacatcga cgtatcatgc aacaagccta taaagaacgc attgataagg
     8941 ttatatatga cccctacaga cattccaagc atcatcggaa tagataaatg tgctatcgct
     9001 ttaggaatgc tcgcttttgt taaataataa ttatctgagt gtttcatttt ggttccccct
     9061 caaaattagt tagaactcta actatatagt taaatttttt tattccgtat tgtcatcaat
     9121 tttactaagt agatcaataa agattttata ctcgtcagcg gaaaggattt ttttcgcttt
     9181 atcatcttca cgcgggaagg attcattaaa ttcgtccact attcgtttac cttcttcagt
     9241 taaagtgacc actttttctc tgccgtctcg aatgcttggt ttacgagaaa ttaattcttt
     9301 tttctcgagt ccttgaatga ggctagtaat acttgcgcca cgcgtttgga agattcgctg
     9361 aagatctttt tggataattt catttgccgc attatcattt aaaaacccta gaactctagc
     9421 ttgttgagtt gtcagcccaa attgagctac ttttgcgtcc attttccgtt tggatttaat
     9481 cataatcgaa cgaattaacg tatccatcgt tttctctctt ctcacgagta ttcctcctta
     9541 ttaattagaa ttctaactaa ttatagcgca tttcaaaaaa ttgtcaagca aaaaaacaac
     9601 ctatttgcga aagtacaaat aggttgcagc tattatagta atgaagttaa ttcgatatct
     9661 ggatttttat cattaaacca attaattgcg aattcatttt caaataagaa taacggttgg
     9721 tcgaagcggt cttttacgag catacttcga gcggtggata gtttttcatc cgcatcttct
     9781 tctttgaccc aacgagcgat ttttttgccg attggttcca tccgaatttc tgaattatat
     9841 tcgccacgca ttctgtgttc gaatacttca aattgcaact gaccaacagc cccaataatg
     9901 tattcttccg tgcgccacgt tttaaataat tgaatcgcac cttcttgaac aagttgctcg
     9961 acgcctttat ggaaatgctt ttgtttcata acatttttcg cataaacacg cataaataat
    10021 tctggggtaa actgcggaag tttttcaaat tcaagttttt tacttccatt agtaatcgta
    10081 tcgccaattt ggtaatttcc cgtgtcgtac aaaccgataa tatcaccagc taccgcacga
    10141 ttaacagttt cccggtcatc cgccataaac tgcgttgagt tagcaagctt catacttttg
    10201 cccgttcgcg ttaacgtaac attcatgccg cgttcaaatt cgcctgaaca aattcgaata
    10261 aaggcaatcc ggtcccggtg agcaggattc atattcgctt ggattttgaa aataaagcca
    10321 gaaaacttcg gattatcagc ttcaatcacg ccctcattcg attcatgact tgaaggagat
    10381 ggcgcaaaat caacaaatgt acgtaagaaa gtttctacac caaaattagt taaggcactt
    10441 ccaaagaata ctggtgtttg ttcaccggca ataatacgtt cccggctaaa atcatttcca
    10501 gcctcatcaa gtaacataat ttcttccaat gcttgatcat aataaagtga tttttgaata
    10561 gcatgtgctt ctttcaaatc accatcttca ccaagtggca agaaacgctc atcttcctct
    10621 gaacgatatt gttcaatcac acgatgatag cggtcataaa gcccagcaag ctctttcccc
    10681 ataccaattg gccagttcat tggatacgat tcaatgccaa gaacttcttc taattcagca
    10741 agtaattcaa gcggcatttt cccttgacgg tccattttat taataaaagt aaaaattgga
    10801 atcccgcgca tccgacaaac tttgaaaagt tttagcgttt gggcttcaat ccctttcgca
    10861 gcatcgataa ccataactgc actatccact gccatcaatg tccggtacgt atcctcactg
    10921 aaatccgagt gacccggtgt atccaaaata ttaattcttg aaccattata atcaaactgc
    10981 atcacagaac tcgttaccga gataccacgt tgtttttcaa tttccatcca gtcacttgtc
    11041 gcaaacttgc cagatttctt tccctttaca gtcccagctg aacgaataac gccaccgaat
    11101 aataataatt gttccgtaat cgtcgttttc ccagcatccg ggtgagaaat aatcgcaaac
    11161 gttttgcgtg aagcaacttc tttttgcaaa tcttgactca ttgttatttt cctcctagat
    11221 tcattcacat tccattagta tagcataact aggagaattt cggctgattt tttattcaaa
    11281 aattattttg tttgtcgttt catgaggatc acagataata caccaaacac gactgcaaag
    11341 gcacttaaaa taagtaaact aagccctgtt gtaactgttt tatcgctcca ataaatcgta
    11401 attccaatca tttcttttgt tgcatccatc gcctgagtat tacctgcaaa aacttgttgt
    11461 aatggctctt tcgtcatgat ttctcgaatg gtagaagctc cgtatgtgaa aggaaaacat
    11521 ttcatcgcag tttgcaccgt agccggaagt gaaccaatgg gtaaataaat ccctgcaata
    11581 aaaccaataa cagtcccaac aatcgtcgaa acggagctaa aggcactcgc tttttttacc
    11641 aaactggcga taaagaacat catactacta caacagaaaa cattaattaa aataacccca
    11701 attaaacgaa tccagctctc aaaaggtaaa aatgctccgc cagtcaacca aatatacatt
    11761 tctccaacaa aaagtgttac aacagacaac aagaaggaag caactagtcc actaacaata
    11821 taactaataa caatacgcca tctggaagct ggtgttatcg caaagcttct cgcaatactt
    11881 aattcttcat catgtacttt caaagaaaaa acagctaacg atactgtcac aggtgtaatg
    11941 gataaaatcc ccgcaatcac ccaagtattc actaattctt gaatccctat cgtttttcca
    12001 gaagcctgtt tgaacatctc ttccatatta tttcctaaaa aaatcgcata cagcccaata
    12061 ataattaaaa cagttagtaa tgacataaat acagctgttc tatcacgaaa ataaattttt
    12121 aaatta
//
LOCUS       DASDXX010000071        12108 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.071, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000071 DASDXX010000000
VERSION     DASDXX010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12108
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.071"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..628)
                     /locus_tag="U0280_001510"
     CDS             complement(<1..628)
                     /locus_tag="U0280_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271461.1"
                     /translation="MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTP
                     VRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIELLEMAEILVVQTIEKCKNKNLT
                     YKPEQGNALLEEMREIQKEEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFN
                     KAQKDIKMIPVLLEEETMETLEQLTYYMVEKKHDLAKEVIQKLVNLYII"
     gene            complement(652..1602)
                     /locus_tag="U0280_001511"
     CDS             complement(652..1602)
                     /locus_tag="U0280_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2271462.1"
                     /translation="MIEFFKTTNEKMEQISALEDGCWVKVTAPTDDEIEMLSKEMDVP
                     KPYILDALDSEERSRIELKRAEQDVRHSLVIVDYPYESEDELGYAMYETLPIGIVLTR
                     KHLVTITLRDLPILKDVQSMKLEEYDTTNHKQFLLKLLYAVSYYYLKYLNQIIKQTNN
                     LEIQIKQSMKNEQLYAFMAVQKSLVFFATALQSNKAILDKMEDVEHFMQQEDNHDLLR
                     DVIIENKQAIAMTDTYTQIISGMSDVFSSVISNNLNIVMKFLTSFTIILSLPTIVASI
                     YGMNIKLPFMHNEHAFALILLFTLLITTGVTVIFWRRKYF"
     gene            1700..1984
                     /locus_tag="U0280_001512"
     CDS             1700..1984
                     /locus_tag="U0280_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271463.1"
                     /translation="MEFMSMIVTGIVLAAIISGLSFVVGKLSGLSWFWIAFCANSGFF
                     IIFITVQNSFPDNAAVALSYLNLGIGVVLIALTLFQSSNWLFKKTMQRKH"
     gene            complement(2067..2906)
                     /locus_tag="U0280_001513"
     CDS             complement(2067..2906)
                     /locus_tag="U0280_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2271464.1"
                     /translation="MAEISEELRLGEVVLNVGHLKEMADFYQEVIGLKLLEENERMVR
                     LGVSGSDEALLVLKKIDNAVVPEVPRIGLFHTAFLLPTRESLADVLLHLAKSGYPIDG
                     AGDHAYSEALYLHDIEGNGIEIYADRPKAEWMHDGDGNLPMVTEQVDVDSLLQIATDE
                     PFTGMPNGTIIGHVHLQVADADKAEQFYKEVLGMNLTTAIPSARFFAAGDYHHHIGSN
                     VWAGRNLELLQENETGLAWFTIITPDKDAIITNLIEQGYDVKRLENTISVTDSNGIKI
                     HFK"
     gene            complement(2996..4387)
                     /locus_tag="U0280_001514"
     CDS             complement(2996..4387)
                     /locus_tag="U0280_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2271465.1"
                     /translation="MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTG
                     IFILPGTVAAKNAGPAIIFSFVIAAIVCAIAAMCYSEFASSVPVAGSAYTYGYVVFGE
                     LIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAISGPFNPEVGTFINL
                     PAIIIVLVIAFLLTLGIKESTRVNTIMVVIKVGVILLFLVVGVFYVKPDNWQPFMPFG
                     ISGVMNGAALVFFAYLGFDAVSSAAEEVKDPQRTMPIGIIGSLLICTVLYVAVSAVLT
                     GMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILVMSYGATRLIFAMGR
                     DGLLPKVLAEINQKYQTPVKNTWIFAVIVAIISGLVPLDRLAELVNIGTLLAFMMVSI
                     GIIFLRKNKDIQARGFKVPFYPVLPIVSFLLCAFLISRLSVHTWILCGIWFVIGLIVY
                     FAYGRKHSELLKK"
     gene            4622..6442
                     /gene="ltaP"
                     /locus_tag="U0280_001515"
     CDS             4622..6442
                     /gene="ltaP"
                     /locus_tag="U0280_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid primase LtaP"
                     /protein_id="HEM2271466.1"
                     /translation="MILFYFLLIIGKFTFAYFQIFKDPNFLALGMDLLFIVLLLGLIH
                     LFAPVRSHIYWYAGMSLFIGILMLVCVLYARFYNEVPTYHSFSLIGEVGVVKNSATSL
                     LSGTDWLYILDIVLLPFILYFHIKKGHEFPSFRITSRVYGVSFISTLLVLSGFTYFMM
                     QQNIISDSKRAKRMGIFTFNISTALTGADHVKAADITAKNVNDIKGVSVKSNPDYFGA
                     AKGKNLIIVQLESFQRNLTNVKINGQSITPTLDSLQNETMYSNQFFQTVSKSNTADAE
                     WSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAV
                     GFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFD
                     IPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHH
                     IIKTDQLPEEQKKYVNRSTELKADPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPT
                     VMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATN
                     YDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRDEDK"
     gene            complement(6485..7135)
                     /locus_tag="U0280_001516"
     CDS             complement(6485..7135)
                     /locus_tag="U0280_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TalA family protein"
                     /protein_id="HEM2271467.1"
                     /translation="MFLDTGNLEEIKKALQFPFFEGVTTNPTILLKENKPRNTHIANI
                     PAKVVFVQAAGLTEEEIWEDVLRIQAIEPAEGTVIGLKIPAHEAGIKVIAKVRANFPN
                     EIILATAIFSSEQGYIAALSGADYLAPYYNRMEVSGLDAAKTIEELRYVLDLQGLEDV
                     KIMGASFKNSRQIMQALASGADTVTIGYDLFLQMMNKPLALESIEKFNEHQAALPK"
     gene            complement(7275..8003)
                     /locus_tag="U0280_001517"
     CDS             complement(7275..8003)
                     /locus_tag="U0280_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271468.1"
                     /translation="MKKINWTQWIALFVFASMGISVVFTIYEIFTAPIKQPATGPHVT
                     LRGDYIFLLFEIILGIFILLLPSIIARRFKFEIPGLVYILFIVFLYGSIYLGTVQKFY
                     STVPHWDKILHTFSGAMLGAIGFSFVSLLNANNKVVMKLKPGFIAVFAFCFAVTMGAF
                     WEVYEYTFDGIMNLNMQRYNLSNGTPLTGRAALEDTMTDIIVDIIGALFIVIVGYFAL
                     KKGRPWMERFEFKRKNWKKEPKKK"
     gene            complement(8098..9978)
                     /locus_tag="U0280_001518"
     CDS             complement(8098..9978)
                     /locus_tag="U0280_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEM2271469.1"
                     /translation="MKEWMKQNWQFITTGISGILIVIGCLVGSDVGDFWTAVIFLSAF
                     VIGGFEQAKEGIQATIKTKKLNVELLMILAATGASIIGYWFEGAILIFIFSVSGALET
                     YTTNKSKREITKLMAFQPERAFRLLPNGDLEEVAAKELQLDDMVFVRPGESVPIDGVI
                     VRGSTTLNEAAINGESVPATKTVGADVFGGTVNVSSAITVKVTQTFDNTIFSKIIRLV
                     ESAQSEPSKTARFIERFEDAYVKAVLLFVLVMMFLPHFALGWSWNETFYRAMVLLTVA
                     SPCALVASVTPATLAAISNGARHGILFKGGVHLENLRGVKAVAFDKTGTLTNGTPELT
                     DRLFAENVDKQQVINVVGAMERQSLHPLAAAITQDLEAEITEKLTEIEVTDVAGWGVQ
                     AIYQEGNWKVGKAGFVGEEAAAAFSNGAFERLAGEGKTIVYVAKDGVIQAMFALKDTC
                     RPEAIRTIKALQAKGIKTIMVTGDNEQTGAAIQAELGMDYVVSGCLPEKKVDVLKELS
                     VTYGSVAMVGDGINDAPALAHAAVGIAMGEGTDIAMETADVVLMKNDLEKIPYAYNLS
                     ERLHWITWQNICFAIAVILVLITANVFQLINLPFGVVGHEGSTILVILNGLRLLRSNR
                     KK"
     gene            complement(10244..11161)
                     /locus_tag="U0280_001519"
     CDS             complement(10244..11161)
                     /locus_tag="U0280_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HEM2271470.1"
                     /translation="MKRITIGNSALTASEISLGCMRMADLSKEDANKVINTALENGID
                     FFDHADIYGGGKSEEVFADAIDMNATIREKMILQSKCGIRQGFFDFSKEHIIASVEGS
                     LKRLKTDYLDTLLLHRPDTLFEPEEVAAAFTELEKSGKVRHFGVSNQNPGQIELLKKY
                     VDQELIANQLQFSIMHTGMIDTGFNVNMTIDPSLDRDGGILEYSRLNNMTIQAWSPFQ
                     YGFFEGVFLDNDKFPELNKVIDKIAADKGVTNSAIAVAWIQRHPASFQTVVGTMNPGR
                     IADIAKASDVTLSREEWYEIYRAAGNQLP"
     gene            complement(11225..11758)
                     /locus_tag="U0280_001520"
     CDS             complement(11225..11758)
                     /locus_tag="U0280_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM2271471.1"
                     /translation="MERKLIQEINLLENKKLVMNLNIVAIAIVLILTVLGIVFSGGFA
                     ITNGFMGIIWMFGGYAVAIVIHEAVHGIFFKAFRPEAKVKFGFKNGMAYAGSPGAFYT
                     KAQFFIISIAPFIVLTGLFIFLRFLGVNEAVLYLIFALHTSGCVGDFYYCILLINQPA
                     GIVVEDTDKGINFYSEG"
BASE COUNT         3784 a         2658 c         1881 g         3785 t
ORIGIN      
        1 ggataatata caaattcact aatttttgta ttacctcttt tgctaaatcg tgtttctttt
       61 ctaccatgta gtaagttaac tgttctaacg tttccattgt ttcttcttcc aagagcacag
      121 gaatcatttt aatatctttt tgcgctttat taaagaaatc tcgcttcatt ttcctaacaa
      181 tatcttcagc ataactatta gctaactgcg caacaaattg caacaaccat ttgctaagta
      241 acgacagata agcctccaca tcttcttctt tttgaatttc gcgcatttcc tctaatagcg
      301 cattaccttg ctctggttta taggttaaat ttttattttt acatttttca atcgtttgta
      361 cgacaaggat ttcggccatt tctaataatt caataaaacg tcctgcactc atgctgcttt
      421 caatcacaat tgccccccgg ttcagctcgt attcgattaa ctcttcggat actaaaaccg
      481 caattgcttt tctgactggc gttcgactaa tagataattc ttttgcaata ccagcttctg
      541 aaatatgttg acctacatga agctttccac tgagaatttt ttctttgatt gtataatatg
      601 ctaatttttc atatgtttgt ttttccatgc tcatccctcg ttttctatat attaaaagta
      661 ttttctacgc caaaaaatga cagttactcc cgttgtaatt aaaagcgtaa ataaaagaat
      721 taatgcaaat gcgtgctcat tatgcatgaa tggtagctta atattcatcc cataaatact
      781 agccacaatc gtgggtaatg acaaaataat ggtaaatgat gttaaaaatt tcatcacgat
      841 atttaaattg ttcgaaataa ccgaagaaaa tacatccgac atcccgctaa ttatttgggt
      901 atatgtatcc gtcattgcaa ttgcttgctt attttcaata ataacatctc tgagcaaatc
      961 atgattatcc tcttgctgca taaaatgttc tacatcttcc attttatcga gaattgcttt
     1021 attcgattga agggccgttg caaaaaatac taaacttttc tgaactgcca taaaagcata
     1081 cagttgctca tttttcatcg attgtttaat ctgtatttct aaattatttg tttgtttaat
     1141 gatttgattt aagtatttga ggtaataata agatacagcg tacaataatt ttaacaaaaa
     1201 ttgcttatga ttggttgtat catattcttc taacttcatc gattgcacat cttttagaat
     1261 tggcagatct cgcaacgtga ttgttacaag atgttttcta gttaaaacaa tcccaatcgg
     1321 aagtgtttca tacattgcgt agcctagttc atcctccgat tcgtatggat aatctacaat
     1381 gactagtgaa tgtcttacat cttgctctgc tcgttttaat tctatcctag agcgctcctc
     1441 agaatctaat gcatccaaaa tatacggttt gggcacatcc atttccttac tcaacatttc
     1501 tatttcgtcg tctgttggag cagttacttt tacccaacaa ccatcttcca aagcagaaat
     1561 ttgctccatt ttttcatttg ttgtcttaaa aaattcaatc atctagatat ctcccttctt
     1621 cgtatcttct ttacaaaata tttcatttat gttacattat tattaataat aattcattta
     1681 tgacaaagga gcgatgaaaa tggaatttat gtctatgata gttacaggaa ttgttttagc
     1741 agcaataatc tcaggacttt cttttgtggt tggtaaactt agtggattat cttggttttg
     1801 gattgcgttt tgtgcaaata gcggtttctt tattattttc atcactgtgc aaaattcatt
     1861 tccagataac gcagccgtag ccctttcgta tttaaatctt ggaattggcg tagttttaat
     1921 tgctttaacg cttttccaat ctagcaattg gcttttcaag aaaacaatgc aacgtaaaca
     1981 ttaaaataat tagtctaatc taccattccc ttattatcgc atcaaaaaac tgtttaagct
     2041 cgtttttcgc ttaaacagtt ctttttttat ttgaagtgaa tcttaattcc gttagaatct
     2101 gtcacggaaa tagtattttc caatcgtttc acatcatatc cttgttctat taagttggtt
     2161 attattgcat ctttatcagg agtaataatt gtaaaccaag cgagtcccgt ttcattttct
     2221 tgcagaagtt ccaagttgcg acctgcccag acgtttgaac cgatgtgatg atgataatca
     2281 ccagccgcaa aaaaccttgc tgacggaata gcggtcgtta agttcattcc aagtacctct
     2341 ttataaaatt gttccgcttt gtcagcatct gccacttgta aatgcacatg accaattatc
     2401 gttccgtttg gcatccctgt aaatggttca tcggtcgcaa tttgaagcaa cgaatccaca
     2461 tctacttgtt ctgtcaccat cggtaaattg ccatcgccat catgcatcca ttctgctttt
     2521 ggacggtctg cataaatttc aatgccattg ccttcaatat catgtaaata aagcgcctcg
     2581 ctataagcat gatctcccgc gccatcaatc ggataacctg atttagccaa atgcagtaac
     2641 acatccgcta aactttctcg cgttggcaaa agaaaggcgg tatgaaacaa gccaatccgc
     2701 ggcacttctg gaacaaccgc attatctatc tttttaagaa caagtaaagc ttcatcagac
     2761 ccactcacgc cgagccgaac cattcgctca ttttcctcta ataacttcaa accaattact
     2821 tcttgataaa aatctgccat ctcttttaaa tgtccaacat tcaatacaac ttcgccaagt
     2881 cgtaattctt cactaatttc tgccatgtaa aaaacgctcc ttttattgta atacattcat
     2941 tacaacataa ggagcgttca aattccaata aaacgactta caaaaagtaa gttaattatt
     3001 ttttaagtaa ctcactatgt tttctaccat aagcaaagta aacaattaaa ccaataacaa
     3061 accaaattcc gcaaagaatc cacgtatgaa cagacaaacg gctaattaaa aacgcacata
     3121 ataagaacga aacaattgga agaactgggt aaaatggtac tttaaatcct ctcgcttgaa
     3181 tatctttatt tttacgtaaa aagataatcc cgatagacac catcataaac gccaagagtg
     3241 ttccaatatt aaccaactca gccaatcgat ctaatggtac aagcccacta ataatcgcga
     3301 ctatcactgc aaaaatccag gtgtttttaa caggtgtttg atatttttga ttaatttctg
     3361 caagtacttt tggtaataaa ccatcacgtc ccatcgcaaa aatcagtcta gtcgccccgt
     3421 aactcattac taaaattact gtaatcatcc caacaaccgc gccaagtgat acaatgccag
     3481 ctacccaatc ttggttaatc acttgcaaag cataagccac tggatctgtt acgtttaaat
     3541 ctgtgtacgg taccattcca gttaaaacag cggatacagc aacatataac accgtacaaa
     3601 taagtagcga gcctataatc ccaatcggca ttgtccgttg cggatctttc acttcttcag
     3661 ctgcagacga aacggcatca aaacctaaat aagcaaagaa aactagcgcc gcaccattca
     3721 taacgccact aattccaaat ggcataaacg gttgccaatt atccggtttg acataaaata
     3781 caccaacaac taagaaaagt aaaataacac caactttaat aactaccata atggtattca
     3841 cgcgcgttga ttcttttatc ccaagcgtca ataaaaaggc aatcacaaga acaataataa
     3901 tcgccggtaa attaataaat gtacctactt ctggattaaa aggcccagag attgcttctg
     3961 ggatggaaat atgaaagcct gaaagtaacg catttaaata agaagaccat ccactcgcaa
     4021 cagaagccac tgcaagcccg tattctaaaa taagtgccca accaagcaac catccaatta
     4081 actcaccaaa aacaacataa ccatacgtat aggcgctccc tgcaaccgga acacttgacg
     4141 caaactctga gtaacacatt gctgcaatcg cacaaacaat cgccgcaatc acaaaagaga
     4201 aaataatcgc tggtcccgca tttttcgctg cgactgttcc tggtaaaata aaaatccccg
     4261 ttccaacaat cgctccgact ccaagtaaag ttaaatcaag tggtccgagc gtttgcttta
     4321 aatgcgtgct accactttta ttatgcatta aatcttctat cggttttctt ctaaataatg
     4381 aattcatttt gtctcctacc tttttacagt cttctaaaag gatatccttt tacactttaa
     4441 aggtcaatag gattgtgaga aaaaatacaa aaactaatca ttctttccta aagtagaacc
     4501 tattacccaa atatatcaga atcatctttc atgatttgca ctagacgcac gattaagcta
     4561 aaattagaag gaatggattt gtgcgtgttt agcacaaagc atgctagaaa gaggaattca
     4621 gttgatttta ttttattttt tattaattat tggtaagttc actttcgcct atttccagat
     4681 ttttaaagat cctaacttct tggcacttgg aatggacctg ctgtttatcg tcttacttct
     4741 tggactaatt catttatttg caccggttcg ctcgcacatt tattggtatg cgggaatgtc
     4801 tttatttatt gggattttaa tgctcgtgtg tgtactttac gcccggtttt ataatgaagt
     4861 tccaacatat cacagcttct ctcttatcgg cgaggttggc gtagttaaaa acagtgctac
     4921 aagcctgcta agcggaacag actggttgta catcctagat atcgttttac tcccatttat
     4981 cctttatttc catatcaaaa aaggacacga gttcccttca ttccgcataa ctagccgtgt
     5041 ttatggcgta tcatttatta gtacgctact cgttttaagt ggttttactt attttatgat
     5101 gcaacaaaac attatcagtg actccaagcg cgcaaaacga atgggaattt tcacatttaa
     5161 tatcagtacc gcgcttactg gtgcagatca tgttaaagcc gcagatatta ctgcaaaaaa
     5221 cgtgaatgac attaaaggtg tgtcggttaa gtcaaatccc gattacttcg gtgctgctaa
     5281 aggaaaaaat cttattatcg ttcaactcga gtcattccag cgtaatttaa cgaacgtcaa
     5341 aattaacggt cagtcgatta cgcctacatt agatagctta caaaacgaaa ccatgtattc
     5401 caaccaattt ttccaaactg tctctaagtc aaatacggct gatgcagaat ggtccgttta
     5461 tacatcgact ttcccaagtg gatattacac gaacacacaa acttacggcg accgggtaat
     5521 tccgtctatg cctcgtttac ttggcaaaaa tgattataaa acagcgacct tccatacaaa
     5581 tgatgctagt ttttacaatc gcgatgaatt ttatcctgct gtaggatttg ataagtttta
     5641 tgatcgtaaa ttctttggcg atgaggacgt tattggcttt tctcctagtg atgaagtgct
     5701 ttataacaaa gcctttccga ttctagaaga gcagtacaaa aacaaccaaa aattctatgc
     5761 gcaattaatt agtgtaagta gtcatatgcc atttgatatt ccaaaagata agcaagaaat
     5821 cgacttaccg agcgatttaa aagatacaga acttggtaac tatttcgaag cggttcatta
     5881 tgcggataaa caacttggtg aattcattca aaaattaaaa gatagcggca tttgggatga
     5941 ttctgttgtc gttttctacg gcgatcatca cattatcaaa accgaccaac tacctgagga
     6001 acaaaaaaaa tacgtcaatc gttctactga gttaaaagcg gatccagccg atgattaccg
     6061 tattccgttc ttcttacatt atcctggcat ggaaaaccct ggtgaaatta aaaatgttgg
     6121 tggcgaaatt gatattatgc caactgtcat gaatttactt ggtattaaaa ctggtgacca
     6181 aattatgttt ggaaccgata tcctcaattc atcaaataat tacgtacctg aacgctacac
     6241 aatgccagaa ggaagttatt tcaccaattc ttacatgtac caaccagatg aaagtttcga
     6301 aactggcgca gcaacgaatt atgatggaac aaacaaagaa ctttcgagtg atgtaaagaa
     6361 acgctttgac gctagccgaa aactcttaca gtattctgat agctatgtaa acaatttacc
     6421 attacgagac gaagataaat aaacaaaaga agtatccagc aaatctggat acttcttttt
     6481 tcgcttattt tggtaaagcg gcttgatgtt cattaaattt ttcaatactt tcaagcgcta
     6541 gaggtttgtt catcatttgt aaaaacaaat catagccaat tgtaacggta tcagctccac
     6601 tagctagtgc ttgcataatt tgacgactat ttttaaagct tgcacccata attttcacat
     6661 cttcaagtcc ttgtaaatct aacacgtatc gcagttcttc tattgttttc gctgcgtcta
     6721 gtccgcttac ttccatgcga ttataatatg gcgctaaata atctgcccca gagagcgctg
     6781 caatataacc ttgttccgat gagaaaattg ctgttgctaa aataatttca tttggaaaat
     6841 tagcgcgaac ttttgcgatg acttttatcc cggcttcgtg ggctgggatt ttcaagccga
     6901 ttaccgtacc ttctgccggc tcaattgctt gaattcgaag gacatcttcc cagatttcct
     6961 cttccgttaa cccagccgct tgcacaaaca caactttggc tggaatattc gctatatgcg
     7021 tgtttctcgg cttattctcc tttaataaaa tagtcggatt agtggttaca ccttcaaaaa
     7081 acggaaattg aagcgctttc tttatttcct ctaaattccc cgtatctaaa aacatttcct
     7141 cactccttca aagttttctt ctcattttaa gtgtagaaaa gttccacgag ccagtcaatt
     7201 gtttctgaga cccaatgttg ttggcgattt tgtacaacaa aaaacacctc cacgtgccga
     7261 ggtgtttttt accgctattt tttcttcggt tctttcttcc aatttttccg cttgaattca
     7321 aagcgttcca tccatggtcg gccttttttc agtgcaaaat agccgacgat gacgataaat
     7381 agtgcgccga taatatcgac aataatatct gtcatcgtat cttccagtgc ggcgcggcca
     7441 gtgagcggtg ttccattaga tagattataa cgttgcatat ttaagttcat aattccatca
     7501 aaagtatact catacacttc ccagaaagcc cccattgtca ccgcgaaaca aaacgcgaat
     7561 acagcgataa aacccggttt aagtttcatg acaactttgt tattagcatt tagcaaacta
     7621 acgaacgaaa agccaattgc tccaagcatc gccccactaa aagtatgtaa aattttatcc
     7681 caatgtggca cggttgaata gaatttttga actgtaccaa gataaatgga tccgtataga
     7741 aatacaataa acaaaatata cacaagacca ggtatttcaa atttgaagcg tcgtgcaata
     7801 atcgaaggta gcaacaaaat aaaaattcct aatataattt caaatagtaa aaatatatag
     7861 tcccctcgta acgtcacatg cggcccagtt gctggctgct tgatcggtgc tgtaaaaatt
     7921 tcgtaaatag taaaaacaac agaaatcccc attgacgcaa aaacaaataa tgctatccat
     7981 tgtgtccaat tgatcttttt catgcactca tctccaatct atcatgtaat accctttttt
     8041 cgcaaaaaga aactgctcat ccatcttaga ctaggaatag acaagcagtc aaatttatca
     8101 ctttttccga ttagatcgaa ggagcctaag cccatttaga ataactaaaa tagtacttcc
     8161 ctcgtgcccc acaacgccaa atggcaaatt gattagttgg aaaacattcg ctgttatcaa
     8221 aacaagaatc accgcaatcg caaaacaaat attttgccaa gtaatccagt gaagccgttc
     8281 agaaaggttg taagcatatg ggattttctc caaatcattt ttcattaaaa caacatctgc
     8341 tgtttccatc gcaatgtccg tcccctcgcc cattgcaatt ccaacagccg catgtgcaag
     8401 agccggagca tcattaattc catcaccaac cattgccaca ctgccataag taaccgacaa
     8461 ttcttttaac acatccactt ttttctcagg taaacaaccg gaaacaacat agtccattcc
     8521 gagttcggct tgaatcgctg cacctgtttg ttcgttatct cccgtcacca ttatggtttt
     8581 aatccctttt gcttgaagtg ccttaatcgt acgaatggct tcaggccggc atgtatcttt
     8641 aagggcaaac atagcctgaa tcacgccgtc tttagctaca taaacaatcg ttttcccttc
     8701 acccgcaagt cgctcaaatg caccatttga aaatgctgcc gctgcttctt ccccaacaaa
     8761 cccagctttc ccaactttcc aatttccctc ttgataaatc gcttgaactc cccatccagc
     8821 tacatccgtc acttcaattt ctgttaactt ttcggtgatt tctgcctcta ggtcttgcgt
     8881 tattgccgca gctaacggat gtaaagattg tcgctccatc gctccaacta cattgattac
     8941 ttgttgctta tcgacatttt cagcaaataa ccgatctgtc agttctggtg taccatttgt
     9001 cagcgtccca gttttatcaa atgcaacagc ttttacaccg cgcaaatttt ccaagtgtac
     9061 gccgccttta aacaaaatcc cgtgacgtgc accgttcgaa attgccgcta aagtcgcagg
     9121 cgttaccgaa gccactagcg cacaagggga agcaaccgtt agcaaaacca tcgcacgata
     9181 aaatgtttca ttccaagacc accctaaagc aaaatgaggc aagaacatca ttactaacac
     9241 aaataataga actgctttta catacgcatc ctcaaatcgt tcaataaagc gagcggtttt
     9301 cgaaggttca ctttgagccg attctactaa acgaataatc ttactaaaaa tcgtattatc
     9361 aaatgtttgc gttactttga ccgtgatggc gctgcttaca ttgaccgtcc cgccaaacac
     9421 atccgcacca actgttttcg tcgctggcac tgattcccca ttaatggctg cttcatttaa
     9481 cgtggttgac cctcgaacaa tgactccatc gattggaaca ctttctcctg gccgaacgaa
     9541 taccatatca tccagttgta actcctttgc agccacttcc tctaaatctc cattaggaag
     9601 caaacgaaag gcgcgttctg gttgaaatgc cattaatttc gtgatttcgc gcttactttt
     9661 attggtcgta tacgtttcta aagcgccact aaccgagaaa ataaaaataa gtatggcccc
     9721 ttcaaaccaa taaccaataa tagatgcacc ggtagccgct aaaatcatta agagctccac
     9781 attcaacttt ttcgttttga tagtcgcttg aatgccttct ttagcttgct caaaaccacc
     9841 gataacaaag gcacttagga aaataaccgc tgtccaaaag tcgccaacat cactgccgac
     9901 caaacaacct atcacaatca aaatcccgct aatacccgtc gtaataaatt gccaattctg
     9961 cttcatccat tccttcatta tgctcatcct ctccaaatga taatgattcc cattacccta
    10021 aaaaacacaa aaatctgctt tcgcaaccgc gaaaaacaga ttaaacaata attattataa
    10081 ataaatataa aaatatgcgt ccttaactca cttgttatta tagcactttc ctaatgacat
    10141 atcaaactaa ttgataaaat tgcattctaa ttgagaatga atttcactat cactccaata
    10201 cataaaaaaa cacttgagca taatgcccaa gtgtctgatc tcattaaggt aattggttgc
    10261 cagccgcacg gtaaatttca taccattctt cgcgactaag tgttacgtca gaagcttttg
    10321 caatatcagc aattcttccc ggattcattg taccaaccac tgtttggaag ctcgctgggt
    10381 ggcgctgaat ccacgcaacc gctatagctg agttagttac acctttgtca gcagcaattt
    10441 tgtcgattac tttgttcaat tcagggaatt tatcgttatc caagaaaact ccttcaaaga
    10501 aaccatattg gaacggggac catgcttgga ttgtcatgtt gtttaagcga ctatattcca
    10561 aaataccgcc gtcacgatca agtgaaggat caatcgtcat attcacatta aaaccagtat
    10621 caatcatacc cgtatgcata atgctaaatt gcagttggtt ggcgattaat tcttggtcta
    10681 catatttttt cagtagttca atttgacctg gattttgatt acttacgccg aaatgacgca
    10741 cttttccact tttctctaat tctgtgaaag ctgccgctac ttcttctggt tcgaaaagtg
    10801 tatccggacg gtgaagtaaa agtgtatcta aatagtctgt tttcaggcgt tttaagctac
    10861 cttccacaga agcaataatg tgctcttttg aaaaatcaaa gaatccttga cgaattccgc
    10921 attttgattg aagaatcatt ttttcacgaa tagttgcatt catatcaatt gcatcagcaa
    10981 aaacttcctc tgatttaccg ccgccataaa tatccgcgtg gtcaaaaaaa tcaatgccat
    11041 tttcaagtgc tgtattaatc actttattgg catcctcttt actaagatcc gccattctca
    11101 tacatcctag cgaaatttct gaagctgtta aagcgctatt accaattgtt atacgtttca
    11161 aactaagcac ctctttctaa aagtatatcc ttattctaac actttgttgt aatcgttacc
    11221 aagcttaacc ttctgaataa aaattaatgc ctttatccgt atcctccaca acgattccag
    11281 ccggttgatt aatcaagaga atgcagtagt aaaaatcccc aacacaacca gacgtatgta
    11341 acgcaaaaat taaataaaga accgcttcat tcaccccaag aaatcgcaga aaaatgaaca
    11401 aacccgtaag aacgataaat ggcgcaatcg aaataataaa gaattgtgct ttcgtataaa
    11461 atgctccggg gcttccagca taagccatcc catttttaaa accaaatttc acttttgctt
    11521 ctggacgaaa tgctttaaag aaaatcccgt gtacggcttc gtgaataaca attgctactg
    11581 cataaccacc aaacatccaa ataatcccca taaaaccatt cgtaattgca aaaccacctg
    11641 aaaaaacaat tcctaaaaca gttaatatga gtacaatagc aatcgcaaca atattcaaat
    11701 tcataaccaa ttttttattt tctagtaaat taatttcctg aatcaatttt ctttccatcc
    11761 agaccgctcc ttttataaaa acgctgatat tttcgttatt acaattatac aatacttctt
    11821 gtcagcattc tatgtcatag tggggaaata cccaagtccg gctgagggag gtgaaaagtt
    11881 tttcttttgt cggtttctat aaatttttac aagcctttga atcgttaaag ctatatactc
    11941 tcatgtcaca accttacaaa caacaatatc ttctatatta atatcaatta atcgttcgtc
    12001 aaatcacttt aattaaccta tgtttctttc gtgatctaaa ttaacaggaa ctacatactt
    12061 gtattgcata tgatgattgt tctttaagta taatgtttct attgacca
//
LOCUS       DASDXX010000072        12063 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.072, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000072 DASDXX010000000
VERSION     DASDXX010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12063
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.072"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(139..1407)
                     /locus_tag="U0280_001521"
     CDS             complement(139..1407)
                     /locus_tag="U0280_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HEM2271472.1"
                     /translation="MIMNANLEVNAEVVKESYVYLLSRYLVLRQENFDTKEDKIPYNT
                     LKHNSISPADANFVNPNFDVVYSEAWIAVDDENAVILEVPEIKNRYYTVQLLDGWGEV
                     VTNINERNYPEHPHGKFAFVKKGTNPSVPSDAVKIELPSEKVKVLLRVEQKDDPEGAV
                     KLQKAFKFDAPDNIKIKEPLEIPHFTNAEFLLEEIYSNLEELLATYPDKMPRATEFQD
                     KARQVAAYIELGDEQKAEVRNLIVKEAIPYFTNGAKGFGTQKGGWSVTYVAGAFENDI
                     LARAIINYGGIWANSIQEALYFIGQKGTDNELLTGDKVYKIHFPADELPSELADAFWS
                     VTLYSVPDYHVIPNKLNKFCINNYSGPKLSEDGSLTLYIASEKPADVDPGNWLPSKAG
                     KEFSLNFRLYVPKKEVLEGKVFLPPLEVIK"
     gene            complement(1469..2326)
                     /locus_tag="U0280_001522"
     CDS             complement(1469..2326)
                     /locus_tag="U0280_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HEM2271473.1"
                     /translation="MNIVIALIPAVMWGIMPLVVSKIGGKPRQQIIGTTFGALAFAIG
                     VFIFTNPEYTATIIIASFISGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTSLF
                     GVFAFHEWGTTSKLVLGFSALALIIIGIFLTSYQQHKDENSGQNMKKGIITLLISSVG
                     YVGYVVITRWFDISGWDAILPQAIGMVVAGLLFSIKSEEKRFTKQTWLNMIPGVMWAT
                     GNLALLFSNKLVGIATGFSLSQMGVVISTIGGILFLGEKKTKKELILVIIGVVLVIIG
                     GTMIGIAKS"
     gene            2440..2724
                     /locus_tag="U0280_001523"
     CDS             2440..2724
                     /locus_tag="U0280_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEM2271474.1"
                     /translation="MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIV
                     LKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAELMEEIKRRFGDTL"
     gene            complement(2769..3650)
                     /gene="rsmI"
                     /locus_tag="U0280_001524"
     CDS             complement(2769..3650)
                     /gene="rsmI"
                     /locus_tag="U0280_001524"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEM2271475.1"
                     /translation="MIKSQKSFSGASQGALYLVPTPIGNLEDMTFRAIRMLKEADIIA
                     AEDTRNTVKLLNHFEITTRMTSYHQFTKENKEDNIIQRMLDGEVVALVSDAGMPSISD
                     PGYELVQSALNANIPVIPLPGANAALTALIASGLAPQPFYFYGFLPRQNKERTQAIEK
                     LAAREETWILYESPHRLKETLKAIIKITGNDRKIVLCRELTKRFEEFLRGTVEDALNW
                     AMDEEVRGEFCLIIEGNANPPLAEEQLWWQELDIKTHVSTIMEQENVSSKDAIKTVMK
                     ARNLPKREVYSAYHEIK"
     gene            complement(3647..3916)
                     /locus_tag="U0280_001525"
     CDS             complement(3647..3916)
                     /locus_tag="U0280_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM2271476.1"
                     /translation="MAKASEHFFYVLKCSDNSYYGGYTTDVIRREAEHNAGIRCKYTK
                     TRRPVKVIHFEKFETRSEATKAEAAFKKLSRKNKDAYLIQREESE"
     gene            complement(3900..4652)
                     /locus_tag="U0280_001526"
     CDS             complement(3900..4652)
                     /locus_tag="U0280_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEM2271477.1"
                     /translation="MEKLELIGDERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYL
                     PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII
                     EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVA
                     ASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKDG
                     KPGVKYVPPVIVYDELGEYTPVIKEILYGESE"
     gene            complement(4710..5099)
                     /gene="yabA"
                     /locus_tag="U0280_001527"
     CDS             complement(4710..5099)
                     /gene="yabA"
                     /locus_tag="U0280_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HEM2271478.1"
                     /translation="MDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRLNLE
                     NEHLRRRLSLTDEATPEPKAEIEAEHGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGF
                     HVCNVHFGSPRGNDEDCLFCLSLLNKK"
     gene            complement(5110..5943)
                     /locus_tag="U0280_001528"
     CDS             complement(5110..5943)
                     /locus_tag="U0280_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage 0 sporulation family protein"
                     /protein_id="HEM2271479.1"
                     /translation="MLKIVGVRFKDVGKIYYFSPGELEITENQGVIVENAQGIEFGKT
                     VIEPRYVDEEDVVLPLKKVLRIATEADYKCVAENGDSCQKAFLLCDEKIRERELEMSL
                     VDVDYTFDRNKIIFYFTAEGRVDFRELVKDLASVFRTRIELRQIGVRDEAKLLGGIGP
                     CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYEQAKRE
                     MPDVGVKVKTPEGIEARVSGINLLSRILQVSLPEEETVIEYELDELRPYNEFLKQPAK
                     S"
     gene            complement(5949..6941)
                     /gene="holB"
                     /locus_tag="U0280_001529"
     CDS             complement(5949..6941)
                     /gene="holB"
                     /locus_tag="U0280_001529"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEM2271480.1"
                     /translation="MGLQDELTVMQPVVMKIFSKSVRENRLSHGYLFEGARGTGKKRT
                     ALWLAQSLFCLESTETELACGKCANCTRIASHNHPDVHLLEPDGASIKIDQVRALKQE
                     LSKRGMESDQKVVIIYDAEKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQS
                     RLQPVTFKSLTFDSLLASLTAAGISEQKARIYASITGSVEEAKAFEESEWFSEARNVV
                     IKLYEGIHHQGTSPLIIIQESWMPLFKEKDKMALGLELLLLLYRDRLHLTLDENYEPI
                     CTAQKEMLGQDALRKSLSETTGEIEKILAAKSKLDSNMNTQLLMEQLVLEIQGR"
     gene            7158..7994
                     /locus_tag="U0280_001530"
     CDS             7158..7994
                     /locus_tag="U0280_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2271481.1"
                     /translation="MNESNGSMELYLREHTEEIINKWLSKIYENENTYTSFVYSPRYK
                     DELRADSEQTADLIISYFAGKKAFFEKLDKWLDNMYARRMENEVPLPEVITTLDKLRR
                     EFVSAVGDFCIHNDEVSKCDFSSSLSMVNHGFDRINEAFSAMYYNDIVKHLEQQHRLI
                     EEISTPVISITDKLAILPLMGSVDRERAEKLSEITANKCVHLGVEQLCIDLSGITYFD
                     DALGEMLTNLVTMLKLLGVEAFISGIQPKMAQQINRVELNLSIPAYHSLKAVLQDQTR
                     TI"
     gene            complement(8037..9779)
                     /locus_tag="U0280_001531"
     CDS             complement(8037..9779)
                     /locus_tag="U0280_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2271482.1"
                     /translation="MKKRTTMTSNLKKFGLAFLSVILLVNVLFQTNFVKAATNYGSDF
                     LKTVELLDADGNPQTDFGYYDSIKVHYTWEIPNSTNVKEGDTMEFVLPPELKIVTDLD
                     FSLKDHDGNTVGHVIAKKSTGQVVITFTDFVEKNSNISGYLDFWTNWDKSLVEGNENV
                     PVEFPVNGTTETIDVGVGGKNQIDPDESLYKYGWANAEHPELIQWVVRVNYSKQNIQN
                     AVYEDFIGPKQVVDFNSIKAFHGEFDPDDNFTPGAEVPSSAITQTTEGFKVDLGNLTD
                     SVKISYYTTSTDNGASPNYTNKGQLTGDNFIKQEIEVATPTSGGGGGGEGTTGSVELT
                     KTDDSSQKNPLEGAEFKLVNGAGTIVQTGLKTNIDGKLTISNLKYDTYQLIETKAPQG
                     YVLDASPVEFTIDDAHQSLFLSKENSAIKGSVSLEKVDHDTQNLLADAEFELQDKDGN
                     TLQPNLKTDKMGKLTVTDLLPGEYQFVETKAPTGYILDATPVKFKISTEALNVTVTKE
                     NTKKPEIPKVPVPPKTPEQPDKPDKPEQPDKIISADSKRTTLPKTGDTPLVNGWGILL
                     VAISASGLIALRRK"
     gene            complement(9970..11994)
                     /locus_tag="U0280_001532"
     CDS             complement(9970..11994)
                     /locus_tag="U0280_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2271483.1"
                     /translation="MKAATSYGSQFLNTVELLDKDGVPQTDFGYYDNMDVHYTWSIPN
                     STNVKAGDTMDFTLPSQLALATDLAFDVKDSNGQVVGTATVKRATNQVTLVFSDYVEK
                     HSDIKGELDFWTTFNQKVITGNETVDLEFPLENGTTQIDVKVGEKTPVSPTETLFKYG
                     WVDASNPSLIHWVIRVNYAKVNIPNAVFTDIIGSKQTLNFDSIKAFHGTYSADRIFTA
                     GAAISSTNFSATSDGFSVALGDLTDSVQISYTTTATDGGKSTQYDNTAKLAGTDFVPK
                     QTSTWTPASGGGGEGGGTTGSVTLTKEDAKTKATLEGAEFKLVDSKGTVLQENITTNA
                     SGQLSIADLKFDTYQLIETKAPTGYKLDTTPVEFTIGENNQAITVTKENTLNTGSVEL
                     TKLDSATKATLAGATFELQDKEGNTLQTGLTTDENGVLKVTDLVPGSYQFIETSAPTG
                     YKLDNSPVSFEIIASETDQIVKVTKENTLEVGSVELTKLDSATKATLAGATFELQNKE
                     GNTLQTGLTTDENGVLNVTDLVPGTYQFVETKAPIGYELDTTPVVFEIIAGETDQPVK
                     VTKENTLVPPTPVPPTPVPPTPVPPTPVPPTPIPPTPLPPVPYEPTVPPTKPAVPVTP
                     KKSENSEDSPKTTQIRITKSLPKTGDTNSFAGLGVILIALSLSGLLLKRK"
BASE COUNT         3274 a         2424 c         2229 g         4136 t
ORIGIN      
        1 cctcgtaaaa tttttacgag gtgatttaaa aatagtccta ttacaataca aaaagtgtaa
       61 gtgtttttat ttttatatac aagaaagcta agtatgttac cacccaaaat tggtaattgc
      121 atacttagct ttttaggttt attttataac ttccagcggt ggtaagaata ctttcccttc
      181 caacacttct tttttcggaa catatagtcg gaaatttagt gaaaactctt ttccagcctt
      241 gcttggtagc cagtttcccg gatctacatc agctggtttt tctgacgcaa tgtagagcgt
      301 caagctgcca tcttcactta gttttggacc tgagtaatta ttgatgcaga atttgtttaa
      361 tttatttggg ataacgtggt aatctggaac actgtataag gtaacggacc aaaaagcatc
      421 tgccagttct gatggaagtt catctgccgg aaaatggatt ttataaactt tatcgccagt
      481 taataactca ttatccgtac ctttttgacc gatgaagtat agtgcttctt gaatagaatt
      541 cgcccaaata ccgccgtaat taatgattgc tcgcgctaaa atatcatttt cgaacgcgcc
      601 agctacgtaa gtaacagacc atccgccttt ttgtgtacca aatccttttg caccatttgt
      661 aaaatatgga atggcttctt tcacaattaa gtttcttact tcagcttttt gctcatcacc
      721 aagctcgata taggctgcca cttgtcttgc tttatcttgg aattcagttg ctcttggcat
      781 tttatctgga taagttgcta gtagttcttc caaattggaa taaatttctt ctaataagaa
      841 ctctgcatta gtgaaatgtg gaatctcaag tggttctttg atttttatat tgtctggtgc
      901 atcgaatttg aatgcttttt gaagttttac tgcaccttca ggatcgtctt tttgttctac
      961 gcgaagaagt acttttactt tctctgatgg taattcgatt tttacagcgt cacttggaac
     1021 ggaaggattt gttccttttt taacgaaagc aaattttcca tgtggatgct ctggatagtt
     1081 acgttcattg atatttgtta ccacttcgcc ccagccgtct aaaagttgca cagtatagta
     1141 gcgattttta atttctggta cttctaaaat aacggcattt tcgtcatcta cagctatcca
     1201 agcttctgaa taaaccacat caaagttcgg atttacaaaa tttgcatctg ctggtgaaat
     1261 cgaattgtgc ttaagtgtgt tatatggaat tttatcttct tttgtatcaa aattttcttg
     1321 gcgtaaaacg agatatcgcg ataataaata aacataggat tcttttacaa cctcagcatt
     1381 tacttctaaa ttcgcattca ttatcagtat aaccaccttt aatttagatt aatttaagta
     1441 tagcattgta tcctctcgaa agctgttctt agctttttgc aattccaatc atcgtaccac
     1501 cgataattac taagacaacc ccgataatga ccagaataag ttctttcttg gttttcttct
     1561 ctcctaggaa aaggattcca ccaatggtcg aaatgacaac acccatttgt gagagcgaaa
     1621 aacctgtagc gattccaact aatttatttg agaatagtag agccaagtta ccagtagccc
     1681 acatcacccc tggaatcata tttaaccagg tttgctttgt aaaacgtttt tcttcagact
     1741 taatagaaaa taataatcct gcgactacca tcccaattgc ttgaggtaaa atcgcgtccc
     1801 acccactaat atcaaaccaa cgagtgataa cgacatatcc tacataacct acggatgaaa
     1861 taagtaaagt gataattcct tttttcatat tttggccgga attttcgtct ttatgttgtt
     1921 gataacttgt taagaaaatc ccgataataa ttaatgctaa tgcggaaaat cctaatacta
     1981 atttggaagt tgtaccccat tcatgaaaag caaatacacc aaaaagcgat gtacctacta
     2041 actgcattcc tgtcgaaagt ggcattgttt ttgatacgcc tacttgtgta aatgcccgga
     2101 actgattcat ttgacctaag ctccaaaatg cccctgaaat aaaactagca ataataatgg
     2161 ttgctgtata ttctggattt gtaaaaataa aaactccgat tgcgaaagct agtgcgccga
     2221 atgttgtacc aatgatttgc tgcctcggtt taccgccaat ttttgaaaca actaatggca
     2281 taatccccca catcactgcc ggaattaatg cgataactat gttcattttt attcccccta
     2341 attcttctgc ttatggtcta tacccttttc ctcatgaaat cattcctatt cccgtaatta
     2401 tctgttaaaa tgaattaaaa ttatcaagaa ggtgagaaaa tgaaatcaac tggaatggta
     2461 agaaaaatcg acgaacttgg tcgtgtggtt ataccgattg aaataagaag aacgatgaac
     2521 ctaaatgtaa aagacccttt agaaatattt acagatgaag atgcgattgt attgaaaaag
     2581 tattccgctg gcttggtttg tgacgttacc ggagaatttt ctgttgataa caagaaattt
     2641 gtggacggta aattgacact cagtaaagaa ggcgctgcgg aattaatgga agaaattaaa
     2701 cgccgctttg gtgatacatt ataaaaaaaa tcatgcgcga gttcccatta aaggattcgc
     2761 gcatgatttt attttatttc atgataagca gagtaaactt ctcgttttgg taaatttctc
     2821 gctttcataa ccgttttaat tgcatcttta gaactaacat tttcctgttc cattatggtg
     2881 cttacgtgcg ttttaatatc gagttcttgc caccagagtt gctcttctgc aagcggtgga
     2941 ttggcatttc cttcaataat caagcaaaat tctccgcgaa cttcttcgtc cattgcccag
     3001 tttaacgcat cttcaaccgt tccacgtaaa aattcttcaa atctttttgt gagctctcga
     3061 cacaagacaa ttttccgatc atttccagtg attttgatga ttgcttttag tgtttctttt
     3121 aaacgatgtg gtgattcata taaaatccac gtttcttcgc gcgccgctaa tttttcaatc
     3181 gcttgagtac gttctttgtt ttggcgtgga agaaatccgt aaaagtaaaa cggctgcggg
     3241 gcaagaccag atgcaatcag tgcagttaat gcagcattgg ctcctggtag agggatgaca
     3301 ggaatattag catttagcgc actttgaaca agttcgtatc ccgggtcaga aatagatggc
     3361 atccccgcat cactaacaag cgccaccact tcaccgtcta acatccgctg aataatatta
     3421 tcttctttat tttccttcgt aaactgatgg tagctcgtca ttcgggttgt aatttcaaaa
     3481 tgatttaaaa gtttcacggt gttccgcgta tcttccgctg caataatatc cgcttcttta
     3541 agcatgcgaa ttgcacgaaa agtcatatct tctaaattac caatcggcgt tggcactaaa
     3601 tataatgctc cttggctggc tccactgaaa ctcttttggc tttttatcat tcggactcct
     3661 cccgttgtat taaataggcg tctttatttt tacgtgataa ttttttgaac gcagcttctg
     3721 cttttgtagc ttcacttctt gtttcgaatt tttcaaaatg aatgactttt accgggcgac
     3781 gtgtttttgt atatttacat ctaattcccg cattatgttc cgcttctcgg cgaataacat
     3841 ctgttgtata gccaccataa taggaattgt cactacattt tagcacataa aagaaatgtt
     3901 cactcgcttt cgccatataa aatctcctta attactggtg tatattcccc tagctcatca
     3961 tatacgataa caggtggaac atatttcacg ccaggtttcc cgtctttgat tccttctaca
     4021 agtaccgtat tcgcttctct atctgagcgc gggtgcacga attgaatgcg tttcggttcc
     4081 aagcgatatt ttctcattat atcaatgatg tctagtaatc gttccggacg atgaacaaaa
     4141 ttcgcttttc caccttgttt taaaaggctt gcggctacac gaatagtatc ctctagcgta
     4201 cacataactt catggcgagc aatccgaaaa tgttcattgg tatttttcaa acttgtatcc
     4261 ggggttgcaa aataaggtgg attacaggta acaatgtccg cgcgctcttt tggaataaga
     4321 tctgtaattt ttttcaaatc atattcgatt atttcgattt ggtcttccag ttgattataa
     4381 gcaacacttc ttttcgccat atctgccaga cgttcttgaa tttcaacacc aactattttc
     4441 gcttttgttc gcgtactaag tagtaaagga ataatcccat ttccgctaca caaatcaatt
     4501 attttccctt tacggattgg taaataacta aatttagcga ggagaaccgc gtctatcgag
     4561 aaagaaaata ccgatgggct ttgaataatc cgcaaatttt ctgctagtaa ataatctagt
     4621 ctttcatcac caattaattc gagtttttcc aaatgattca ccttttctag caaaaagccc
     4681 ttctcttgaa ttgagaaagg cccgtcatgt tattttttat tgagcaagga taagcaaaat
     4741 aaacaatctt catcattacc acgcgggctg ccgaaatgta cattgcaaac atgaaatcct
     4801 tccttgtaaa gttggacaag attgtcataa ccttccccaa gttcaatcat ttgctgcatt
     4861 gcttccttac gattaggcgc catcacaccg tgttccgcct ctatttcggc tttaggttct
     4921 ggtgtcgctt catccgtcaa agaaagtctg cgtcgcaaat gttcgttttc aaggtttaat
     4981 cggttatttt cttccaacat ttcgcctaag tttgtcttta gatctccaag ttgctgatac
     5041 aattcgccaa tttgctcctc catattactg actgagtcaa aaatagcttt tttatccaat
     5101 tttttcacct caagactttg ccggttgttt tagaaattcg ttatatggac gtaactcatc
     5161 caactcgtat tctataaccg tctcttcttc gggcaaactc acttgtagga ttctagacag
     5221 caagttgatt cccgaaacac gtgcttctat gccttctgga gtttttactt ttacaccaac
     5281 atctggcatt tcacgtttag cttgctcata ttcatcgttc tcatatttca agcaacacat
     5341 taatcgtcca cataaaccag aaattttcgt tgggttaagg gacaggtttt ggtctttcgc
     5401 cattttgatg gaaactggtt cgaaatcacc taagaaagtg gagcagcaga gcatacgacc
     5461 gcatgggcca atcccaccga gcaatttcgc ttcatcacgt acaccaattt ggcgaagttc
     5521 gatgcgagtc cgaaaaacag atgctaaatc tttcacgagc tcccggaaat cgacgcgacc
     5581 ttctgcggtg aaataaaaaa tgattttatt acggtcaaat gtgtaatcaa catcaactaa
     5641 actcatttca agttcgcgct cgcggatctt ttcatcacaa agtaaaaagg ctttctgaca
     5701 cgagtcgcca ttctcagcaa cgcatttata atccgcttct gttgcgatac gcagtacttt
     5761 cttaagtggt aaaacgacat cttcttcgtc cacgtagcgc ggttcaatga ctgttttacc
     5821 aaattcaatt ccttgtgcat tttcaacaat aacaccttgg ttttctgtga tttccagttc
     5881 gccaggtgag aaataatata ttttaccaac gtctttaaaa cggacgccta caattttaag
     5941 catagcgatt acctcccttg gatttccaga actaactgct ccattagaag ttgcgtgttc
     6001 atattggaat ccagttttga tttcgcagcg agaatcttct cgatttcccc tgtggtttcg
     6061 gacagtgatt tacgcagcgc atcttgtccg agcatttctt tttgcgcagt acaaataggt
     6121 tcgtagttct cgtcaagtgt aaggtgtagc cggtcgcggt acagcagtaa caataattcg
     6181 agcccaagcg ccatcttatc tttctcttta aaaagtggca tccatgattc ttgaatgata
     6241 attaatgggc tggttccttg atggtgaatt ccttcatata acttgatgac aacatttctt
     6301 gcctcactaa accactcact ctcttcaaaa gccttcgctt cttccacact cccagtaatg
     6361 ctagcataaa tccgcgcttt ttgttcggaa atgcctgctg ctgttagtga tgcgagtaaa
     6421 ctatcaaaag tcagtgattt gaatgtgaca ggttgcagtc ttgattgaat cgttggcaaa
     6481 atttgcccgg ggtttgttgt taaaaataat aataacaaac cgccttctgg ttcttctata
     6541 aatttcagca gactattggc tgattgaaca gtcatttttt ctgcatcgta aatgataact
     6601 actttttgat ccgattccat tccgcgttta ctaagttctt gcttcagcgc gcgaacctga
     6661 tcaatcttaa tactagctcc atctggctct agcaaatgaa catccggatg attatgactt
     6721 gctattctcg tgcaattggc acacttccca caagcaagct cggtttcagt gctttctaaa
     6781 caaaaaagac tctgagctaa ccaaagtgct gtgcgtttct tgcctgtacc tcttgctcct
     6841 tcgaataaat agccgtgaga taatcgattt tcgcggacac tttttgaaaa aatcttcatg
     6901 accactggtt gcatcactgt aagttcatcc tgtaatccca caaaaaactt cctttctatc
     6961 catattgtaa tattatacca tgaccaagct taaatagctt cggaatttta acaaaaaaat
     7021 aacgttggat tggttaacta atattacaat ttcaataaat tagttatttt tctaaaattt
     7081 aattggacag tacaacgttt tgagcataga ataaagaaaa gtagttatta tacttagact
     7141 taaaggggtt gtctggtatg aatgaatcga atggaagtat ggagctatat ttaagagaac
     7201 ataccgaaga aattattaat aagtggctat ccaaaattta tgaaaacgaa aacacgtata
     7261 ctagttttgt ttactcgccg cgttacaaag atgaactgcg cgctgacagt gaacaaacag
     7321 cggacttaat catttcttat ttcgctggta aaaaagcatt ttttgagaaa ctcgacaaat
     7381 ggctggataa catgtacgcg cgtcgcatgg aaaatgaagt accattacct gaagttatta
     7441 ccacccttga taaactacgc cgtgaatttg tttctgctgt tggtgatttt tgtattcata
     7501 atgatgaagt gtctaaatgt gatttctcat caagtctgtc catggttaat cacgggtttg
     7561 accggataaa cgaagccttc tccgccatgt attacaatga tatcgtcaaa catttagaac
     7621 aacaacatcg tttaatagaa gaaattagca cacccgtcat ttctatcacg gacaaattag
     7681 cgatccttcc tttgatgggg agcgtcgacc gtgaaagagc agaaaagtta tccgaaatca
     7741 cggcaaacaa atgcgtacac ttaggcgtgg aacaattgtg tattgattta tcaggaatta
     7801 cttattttga tgatgcactt ggagaaatgc ttaccaactt agtgacgatg cttaaacttc
     7861 ttggtgtcga ggcatttatt tctggcatcc aaccaaaaat ggcacaacaa attaatcgtg
     7921 ttgaattaaa cttatctatt cctgcctatc attcgttaaa ggctgtctta caagatcaaa
     7981 ctagaactat ataagaaaaa ccgtaagcga ttgtattatc gcttacggtt ttttgattat
     8041 tttcttctaa gtgcaattaa tccactcgct gaaatggcta cgagcagtat tccccaacca
     8101 ttaacaagtg gtgtatcccc tgtttttggt aaagtcgtcc gtttgctatc tgcgcttatt
     8161 attttatctg gttgttctgg tttatccggt ttatccggtt gttctggtgt ttttggtggt
     8221 actggtactt ttggtatttc tggttttttc gtgttctctt ttgttacggt tacgtttagt
     8281 gcctctgtgc tgattttaaa tttgactgga gtagcatcta aaatatagcc tgttggcgct
     8341 tttgtttcga caaattgata ctcgcctgga agtaaatccg tcaccgttag tttgcccatt
     8401 ttgtctgttt taaggtttgg ttgtagtgtg ttgccatctt tatcttgtag ttcaaattcg
     8461 gcatcagcta gtaggttttg tgtgtcgtga tcgacttttt ctagtgaaac ggatcctttg
     8521 atggcagagt tttctttgga tagaaataat gattggtgcg cgtcatcaat tgtaaattct
     8581 actggagacg catcaagcac atatccttgt ggagcttttg tttcgattag ctggtatgta
     8641 tcatatttca gatttgaaat agttagttta ccatcgatat tagtttttag tcctgtttgg
     8701 actatcgttc ctgctccgtt gactaattta aactcggcac cttctaatgg atttttttga
     8761 gacgaatcat ctgttttcgt taattcaaca gatccggttg tcccttctcc acctccgcca
     8821 ccacctgatg ttggtgtcgc gacttcgatt tcttgcttga taaagttatc tcctgtcaat
     8881 tgccctttat ttgtgtagtt aggtgatgct ccgttatcgg tagaagttgt atagtatgaa
     8941 attttgacag aatctgttaa atttcctagg tcgactttga atccttccgt tgtttgagta
     9001 attgccgatg atggtacctc ggctcctggc gtgaagttat catccggatc aaattcaccg
     9061 tggaatgctt tgatagaatt aaaatcaacg acttgttttg gtccaataaa atcttcataa
     9121 acggcatttt gaatgttttg tttcgaatag ttaactcgaa cgacccattg gataagctca
     9181 ggatgttcag cattagccca gccgtattta tataaacttt catccgggtc aatttgattt
     9241 ttaccaccaa cgcccacgtc aattgtttct gtggtaccat ttactggaaa ttcaactgga
     9301 acattttcat ttccttctac taatgattta tcccaattag tccaaaaatc gagatatcca
     9361 ctaatattgg aatttttttc aacaaagtct gtaaatgtaa taactacttg cccagtcgat
     9421 tttttagcaa tcacgtgacc taccgtgttg ccatcgtgat ctttcaaaga aaagtctaaa
     9481 tctgtaacta tcttcagctc tggaggtaac acaaattcca ttgtgtcgcc ttccttcaca
     9541 ttagttgaat tggggatttc ccaagtatag tgaaccttga tgctgtcgta ataaccgaag
     9601 tccgtttgag gattgccatc tgcgtctaat aattccacag ttttcaaaaa atcggagcca
     9661 taattagttg ctgctttaac aaagttagtc tgaaataaaa cgtttacaag caagataacg
     9721 ctaagaaagg ctaatccgaa tttctttaga ttagacgtca ttgtcgtgcg tttcttcata
     9781 aaaaccatcc ttttttaatt aatttcaatc ataatatatt gctaattcat agtgattata
     9841 cattattttt tctaaaaatc ggttctcctt cacaaaaaaa gccttctaat tgtgaacatt
     9901 ttgtgacaat tgcaattctt aaacaaccta attaaaacag gcttagataa ttatctaagc
     9961 ctgttttttc tattttcgtt tcagcagaag accacttaat gacaaggcta ttaggattac
    10021 tcctaagcca gcaaaactat ttgtatctcc tgttttagga agacttttag ttattcttat
    10081 ctgggtcgtt tttggactat cctcgctgtt ttctgatttc ttaggcgtaa ctggtactgc
    10141 tggttttgtt ggtggcacag ttggttcgta tggtactggt ggtaacggag taggcggtat
    10201 tggtgttggt ggcactggtg ttggtggtac tggtgttggt ggcactggtg ttggtggcac
    10261 tggtgttggc ggtactaatg tgttttcttt tgttactttt accggctggt cagtctcacc
    10321 agcgatgatt tcaaaaacaa ctggcgtcgt atcaagttca tatccaattg gggcttttgt
    10381 ttcgacaaat tggtatgttc ctggtactaa atcagttacg tttaaaacgc cattttcatc
    10441 cgtagttaaa ccagtttgta atgtgtttcc ttctttattt tgtaattcga atgttgctcc
    10501 ggctagggtt gctttggttg ctgagtctag ctttgttagt tccacggagc caacttctag
    10561 tgtgttttct tttgttactt ttactatttg atctgtctcg cttgcgatga tttcaaaact
    10621 tactggactg ttgtctaact tgtagcctgt tggagcactt gtttcgataa attggtaact
    10681 gccgggtact aaatcagtta cttttagaac gccattttca tctgtagtta aaccagtttg
    10741 taatgtgttt ccttctttat cttgtaattc gaatgttgct ccggctaggg ttgctttggt
    10801 tgctgagtct agctttgtta gttccacgga gcctgtgtta agcgtatttt cttttgtcac
    10861 ggtaattgct tgattatttt caccaatagt aaattcaact ggtgttgtat caagtttgta
    10921 gcctgtcggg gcttttgttt ctattaattg gtaggtgtca aatttcagat cagcaatgct
    10981 aagttgtccg ctcgcatttg ttgtaatgtt ttcttgtagc acagtgcctt ttgaatccac
    11041 caatttgaat tccgcacctt cgagggttgc ttttgttttc gcatcttctt tcgtgagtgt
    11101 tactgaaccg gttgtcccgc cgccttcacc gcctccgcct gatgcaggtg tccaagtgga
    11161 cgtttgcttg ggtacaaaat cagttccggc tagtttagcg gtattatcgt actgggtaga
    11221 cttcccgcca tctgttgcgg ttgttgtata agaaatttgc acagaatccg ttaaatctcc
    11281 tagtgctaca ctaaacccgt cacttgttgc ggaaaaattg gtgctggaaa tagccgcgcc
    11341 tgctgtaaat atccgatctg cggaataagt tccatgaaaa gctttgatag aatcaaaatt
    11401 taatgtttgt tttgagccga tgatatccgt gaaaacggca tttggaatgt tcactttggc
    11461 gtagttcact cgaataaccc aatgaatcag acttggatta ctagcatcca cccaaccata
    11521 tttgaaaagc gtttctgtcg ggctaactgg ggttttctca ccaactttta catctatttg
    11581 cgtcgttcca ttttcaagag gaaattctaa atcaactgtt tcatttccag taattacttt
    11641 ttggttaaaa gtggtccaga aatccagttc tcctttaata tcggaatgtt tttctacata
    11701 atcactgaaa acgagggtaa cttgattggt tgcccttttt acagtggccg ttccaactac
    11761 ttgaccatta ctatctttca cgtcaaaagc gagatcagtt gcgagcgcca attggcttgg
    11821 cagtgtgaaa tccattgtgt ctccagcttt tacgtttgtt gaattcggaa tagaccatgt
    11881 gtagtgcaca tccatattgt catagtagcc aaaatctgtt tgcggcacac cgtctttgtc
    11941 taagagttct actgtgttta aaaactgaga accataactc gttgccgctt tcacaactgt
    12001 tgtttggaag attgtgctag cgacgattaa aatacttaag aaagctaacc caactttttt
    12061 taa
//
LOCUS       DASDXX010000073        12058 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.073, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000073 DASDXX010000000
VERSION     DASDXX010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12058
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.073"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            127..963
                     /locus_tag="U0280_001533"
     CDS             127..963
                     /locus_tag="U0280_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2271484.1"
                     /translation="MSVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKT
                     SFSVVMVDRRGYGDSELTAAIPERASHAYDDYRVTRDAADIAALAKALSDEPVYILGS
                     SSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAM
                     QLFGETLHIAPIDAESMSKPAVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFK
                     PYVHQITLLNGTDSKGSFPQDVNAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSI
                     WG"
     gene            1089..1769
                     /locus_tag="U0280_001534"
     CDS             1089..1769
                     /locus_tag="U0280_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2271485.1"
                     /translation="MNIRTELQNSQLCEGLTEAQLNELMNKITVKEKHYKNNEILFYT
                     DEVTKVYILVKGNAAIAKNTSSGKRILGKNVTEPGELAGEIYYFSHRNPFWDYVIVLE
                     PTTVLEISSIDQETLQTLDLALQNQLLVNLLKSVTRKFEYIGEKVRMVSEDSVRAKIS
                     NYLFGIQDDDGSIELTETREEIADYLDITRPSLSRELGRMQKENIIRIEGSSVIILDA
                     IIFDTFIE"
     gene            1850..2461
                     /locus_tag="U0280_001535"
     CDS             1850..2461
                     /locus_tag="U0280_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM2271486.1"
                     /translation="MLLTRNEPFTAEKIQAKTDILELVQFERFCRDNALWDEMETCFT
                     KDSNVKISWFQGTGHGFIEASKKMTNPAPHKIYNTQVWINNDRAVAIMQATIQTRTII
                     NGVEMELNSDAKLVTRVERIEGRWYINAFEGVYEKDSLMPIIPSKLADVPAELLANFR
                     KSYACLALSLTLNGYEIDNNLPGIDRPEQVAQFFKEADEWLLQ"
     gene            2576..3397
                     /locus_tag="U0280_001536"
     CDS             2576..3397
                     /locus_tag="U0280_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2271487.1"
                     /translation="MEKSKTVQILLVFSVVALILSMVGVVSIWYGQKNHQTNNAKTTA
                     KKETTVTKKQDTFKITALGDSLTYGVGDTEGGGYVRVVENFYKQKEKNVENVNLAISG
                     AKSDQLLKQLDQKEVQNQIKSADVILMTIGGNDLFRGGEALDDFKSNAIKQAEASYTN
                     NLKQIYQTIRKLNPSAPVFHIGLYNPFMSLKNASEMSAVANEWNMQSQNLSQNEKNII
                     YVPTFDLFQQNGDAYLATDKFHPNHAGYQFIGNRVTEVIQTGGGKDDDGASTSSN"
     gene            3369..4274
                     /locus_tag="U0280_001537"
     CDS             3369..4274
                     /locus_tag="U0280_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271488.1"
                     /translation="MTELALQVTNLHKKIRKREIIKGISFEVMPGEVFGFLGPNGAGK
                     TTTIRMIVGLIKPTSGTILIGGKDIRKNFTEAMRGLGSIVENPEFYTFLTGQENLAYF
                     ARMDSSIKKERIQEVTELVGLEKRINDRVSTYSLGMRQRLGIAQALLSNPKLLILDEP
                     TNGLDPSGIHEMRDFIRALARNEGISVLVSSHLLSEIELLCDRVAIMTDGTIIKTDQV
                     SHLLSSRAQLRWLATPFEQAKAFLESVTEVEVDGEYLVTAVNEHSAEWNEQLVAKGIQ
                     VHEIDKKKPSLEDLFLELTGGHTID"
     gene            4267..5247
                     /locus_tag="U0280_001538"
     CDS             4267..5247
                     /locus_tag="U0280_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271489.1"
                     /translation="MINLVYNEQLKLWRKKRLIVILALVAIIVAIFTYAQFRQHQEDE
                     KQAGTSDWHVQTQQQIVDLENRLGTGRLPEEYQKYFKVLVGQLQYYLDNDINPNAPGA
                     PTFLKTFVENGISLLFPLFIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISM
                     LLSISAIMVLSAVIAYLISGIVFGYGGWDAPVLTGFGMKDGAVTTTDVYQLPVWQLLL
                     MEFGLAWFVSVVVGVLTMFVSVLVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLF
                     MVNLQLTNYLNGSSPPVEGMTLSFSMLVLTAWMLVAFILSYFIFTKRDVY"
     gene            5374..6264
                     /locus_tag="U0280_001539"
     CDS             5374..6264
                     /locus_tag="U0280_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2271490.1"
                     /translation="MIKGIHHVSALTKSFSENHHFYSDILGLRLVKNTVNQDNIHMRH
                     LFYGDYTGSPGTLLTFFEVPRIGSSYNERAFFGNITLGIPKGTSSYWKKRLNDFAISF
                     QKEGQTLTLQDPDTMGIILTEIPETISNPIIHTDIPSEKQIVRIIGADYHVPNPAATS
                     QFFTDLFGLESQNGVLVDKDKTSFAKLHATSSDKKSRTGRGTIDHIAYTVETKEAVDE
                     LHDIAVRNDLKIEEFVDREYFKSLYIREPGGLRIEFASAGPGFTIDEPLETMGDNLAL
                     PSFLEEKRTEIETYFGGDLS"
     gene            6261..7220
                     /locus_tag="U0280_001540"
     CDS             6261..7220
                     /locus_tag="U0280_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HEM2271491.1"
                     /translation="MIKDLKGIHHVTAMTSSAEKNYAFFTEVLGMRLVKKTVNQDDIH
                     TYHLFFADDKGSAGTDMTFFDFPNLPKGRHGTDSISRVAFRVPSDAALEYWLDRFEQL
                     EVPHSDIKTLFGKKYLTFQDFDDQQLQLISDENNEGVAAGTPWKNGPVPEKYAIYGLG
                     PVFLTVVSLKNMDAILQTIFGFRKVTEEDGLHLYEVGEGGNGAQVIVEERTDIPAAMQ
                     GYGGVHHVAFRVEDHEELQKWIDRMNTIEAPNSGYVNRFYFESLYVPVSERILFEFAT
                     DGPGFASDEPYETLGEKLALPPFLEPKRAEIEKMVRPINTKRS"
     gene            7227..7835
                     /locus_tag="U0280_001541"
     CDS             7227..7835
                     /locus_tag="U0280_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2271492.1"
                     /translation="MEHIYIPGKNKDLAPLLLLHGTGGDEKSLVEVAEFIAGDAAVLS
                     LRGDIKEGGANRFFKRFHDGSLDLEDLESKTAELITTTRELAEKYQLDFERMIAVGYS
                     NGANIAANALLQAEDSFHKAILFHAMPAGNKQPEFSISHRNVFLSAGLNDPLITAKAS
                     EELVEILEKRGAKVETVWTAAGHSLTMEELEEAKKWYQNNQK"
     gene            7845..8465
                     /locus_tag="U0280_001542"
     CDS             7845..8465
                     /locus_tag="U0280_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HEM2271493.1"
                     /translation="MTIFKSADLSQKENYKFLTGSIIPRPIAFVTTLAEDGETVNAAP
                     FSFFNVVSSDPAIVSIAVQRANGEQKDTARNAAFTKELNIHIVSESFVEEMNKTAARL
                     APDVSEIDTTSLHLEKVPGMKTPKISEANIVLTAKLEQIIPIKNDAGEVVSDLILARI
                     LTYDFADEVFDSEHHYILPEKLEPVARLAGNDYTKLGDIFRIERPI"
     gene            8793..10049
                     /gene="hflX"
                     /locus_tag="U0280_001543"
     CDS             8793..10049
                     /gene="hflX"
                     /locus_tag="U0280_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM2271494.1"
                     /translation="MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNID
                     RENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLIL
                     AIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
                     RTIKYQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYS
                     ETAEKQVFEKDMLFATLETSVREIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEE
                     ARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQT
                     ENTIVFSAREKESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLNDHADVLATEY
                     LENGTQIVAEVSPADLQKLAEYQVAE"
     gene            10115..10987
                     /locus_tag="U0280_001544"
     CDS             10115..10987
                     /locus_tag="U0280_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM2271495.1"
                     /translation="MKKTGWGILGAVAAFTGYAYWSTKHLTVTDYEIVSDKIPAEWDG
                     ATFVQLSDLHSASFGLYNNPLLSIVNELAPDAVFLTGDMIDGDESPYVAMAVVRKLAK
                     EFPVFYVSGNHEGRSAFYEDFKADMEKHHVTVLENERYFLKKDGAAIMVAGVRDPRFV
                     RDDWAEKELPKEVWEEAALKEALDDATANLSPDYFTILLAHRPEFWPLYQAYPIDLVL
                     SGHAHGGQFRLPLTEGLFAPGQGLMPKWTAGIHRAGGKALIVSRGLGNVTKLPRLFND
                     PEIIRMTLRAKGDA"
     gene            10993..11982
                     /gene="lplA2"
                     /locus_tag="U0280_001545"
     CDS             10993..11982
                     /gene="lplA2"
                     /locus_tag="U0280_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate protein ligase LplA2"
                     /protein_id="HEM2271496.1"
                     /translation="MIYLDNEDVLDQAYNFAMEEYALRSLDENETYFMFYRMKPTIIV
                     GKNQNTLEEINHAFVKEHHIDVLRRLSGGGAVYNDEGNISFSMITKDDGNSFQNFAKF
                     TEPVIRALRKLGVNAELSGRNDIEVNGKKISGNAQFATKGRLYSHGTLLFDVDLSMLE
                     KALQVDPEKYLSKGVKSVRSRVTTIREHLAEDIDILTFKQILLESIFETKDIPRYTFT
                     EADKQGIEKLRTERYRNWDWTYGKSPKATIKRKKRFPAGTIEFQVSLEKGQVKEATIY
                     GDFFGTEDVAELAGKIIGCRFERKSIQNAWQEINAKDYFGGIEKEAILDMLFE"
BASE COUNT         3983 a         2152 c         2611 g         3312 t
ORIGIN      
        1 ggtgggtgtt ttttggaaaa taaatccata atagctttct cctttcgtaa ccacggttac
       61 agacgaaatc acaaaagcta tctatactaa agttagattt tagataaatt agaggagatg
      121 gtcataatga gcgttttaaa cattgaagga gcaaaattat cgtatcagaa agtcggacaa
      181 ggtcctattc ttatttttat accgggagca aatggaactg gagatatctt tttaccactg
      241 gcagagcaat tgaaaacatc tttttctgtt gtaatggtag atcgtcgtgg gtatggggac
      301 agtgagttaa cagcagctat accggagcgc gctagtcatg catatgatga ttaccgagtg
      361 actagagatg ctgctgatat tgctgcactc gcaaaagcgt taagcgacga gcctgtttat
      421 attttagggt caagctctgg ttcgattgtt gctatgcatg tcttgaaaaa tcacccagaa
      481 gttgttaaaa aaatagcctt tcatgagcca ccaatcaata cattcttacc agattcggag
      541 atgtggcaag aagcgaatga aaagattgta caaactgccc taactaaaaa tatggctgaa
      601 gcaatgcaac tttttggcga aacacttcat attgccccca ttgacgcaga aagcatgtcg
      661 aaaccagccg taacaataga cgaagtgaca aaagattcaa ccacgcaaca aatgaaatac
      721 tggttcactt atgaaatccg ccaatatact agctctaata tatctttaga cgatttcaaa
      781 ccatatgttc atcagattac gttacttaat ggtaccgatt caaaaggctc attcccacaa
      841 gatgttaatg cctttatagc caaacagctc ggattaacta tcgtggatat tccaggcggt
      901 catttaggtt atattcaaaa accagccgga tttgctaaag tacttttgtc aatctgggga
      961 taaaaataaa aaattctgct aaaggttaaa tttagcagaa tttttttgat gcagtcgtaa
     1021 ttgctattta aaagaaagtg gtctatgctt atcgttaaaa gtaactttca ttttagagga
     1081 gaagcaaaat gaacattcga actgaattac aaaatagcca attatgcgaa ggattaacag
     1141 aagctcaatt aaacgaactg atgaataaaa ttacggttaa agaaaagcac tataaaaata
     1201 atgagatttt attttataca gacgaagtaa cgaaagtata tattttagtt aaaggaaatg
     1261 cggccattgc taaaaataca agtagcggta agcggattct aggtaaaaat gtcacagaac
     1321 ctggagaact ggctggggag atttattatt tctcgcatcg caatccattt tgggactatg
     1381 taatcgtgct tgaaccgaca acagtattag aaattagcag catcgaccaa gaaactcttc
     1441 aaaccttaga tttagcttta caaaaccaac tattagtcaa tttattaaaa agtgttacta
     1501 gaaaatttga atatataggt gaaaaggtac gaatggtttc agaagactct gttcgtgcaa
     1561 aaataagcaa ttatttattt ggcatccaag acgatgatgg cagtatcgaa ttaacagaaa
     1621 caagagaaga aattgccgac tatcttgata ttacaagacc ttcactttcg agagaacttg
     1681 gcagaatgca aaaagaaaat attattcgta tcgaaggaag tagcgttatt attttagatg
     1741 cgattatatt tgatactttt attgagtaac tagtaaccag cgttacatct tttcgtatgc
     1801 ggtaatggta agctattcgt attaaaagaa tgaatacgga ggagattaga tgttattaac
     1861 tagaaacgaa ccttttaccg cagaaaaaat acaagcaaag acagacatcc ttgagctagt
     1921 tcaatttgaa cgattttgtc gcgacaatgc actttgggat gaaatggaaa cttgctttac
     1981 aaaagattca aacgtaaaaa tttcatggtt tcaagggact ggccatggct ttattgaagc
     2041 atcaaagaaa atgaccaatc ctgcgccaca taaaatatac aatacgcaag tttggattaa
     2101 taacgatcga gctgtggcaa ttatgcaagc cactatccaa acacgcacca tcattaatgg
     2161 agtagaaatg gaactcaatt ctgacgccaa attagtcaca cgagttgagc gaatcgaagg
     2221 cagatggtat attaatgcgt ttgaaggagt ttatgagaaa gactcgttga tgccaatcat
     2281 tcccagtaaa cttgcagatg ttcctgctga gttgttagct aattttagaa aaagctatgc
     2341 ttgcctagca ctttcattaa cattaaacgg ttatgagatt gataataatc ttcccggcat
     2401 tgatcgcccg gagcaagtgg ctcaattttt caaagaagct gatgagtggt tgctccaata
     2461 atttaaaaag gatagctagt ttttactagc tatccttttt aaatgaagga gtctcatttt
     2521 aaaatatgct atacttagtg aaatataaac ctcatgaaac ggtaggtggt tgtcagtgga
     2581 aaagagtaag acggttcaaa ttctattagt tttttccgtt gttgcgttaa ttttgagcat
     2641 ggttggggtg gtatcaattt ggtatgggca gaaaaatcat caaacgaata atgcgaaaac
     2701 caccgccaaa aaagagacga cagtaacgaa aaaacaagat acctttaaaa taaccgcgct
     2761 cggtgattcg cttacatatg gcgttggcga tacagaaggc ggcgggtatg tccgagtggt
     2821 ggagaatttc tacaaacaaa aagagaaaaa tgtcgagaat gtcaatcttg ctattagtgg
     2881 ggcgaaatca gaccagcttc tcaaacaatt agatcaaaaa gaagtgcaaa accaaataaa
     2941 atcagccgat gttattttaa tgacgattgg cggaaatgat ttgtttcgtg gcggagaagc
     3001 actggatgat ttcaaaagca atgcaattaa acaagccgaa gcaagctata cgaacaacct
     3061 gaaacaaatt taccaaacga tacgaaaatt aaatccatcc gcgcccgttt ttcatattgg
     3121 gctgtataat ccgtttatgt cattaaaaaa tgcgagtgaa atgtcggcag ttgcgaatga
     3181 gtggaacatg caaagtcaaa atctatcgca aaacgagaaa aatatcattt atgttccgac
     3241 ttttgattta tttcagcaaa atggggatgc atatttagcg actgataaat tccatccaaa
     3301 tcacgccgga tatcagttta tcggtaatcg ggtgacagag gttatacaaa caggaggggg
     3361 aaaagacgat gacggagcta gcacttcaag taactaatct gcataaaaaa attcgcaaac
     3421 gagaaattat caaagggatt tcttttgaag taatgcccgg agaagttttt ggctttcttg
     3481 gaccgaatgg agctggcaaa acaacgacga ttcgaatgat tgtggggcta atcaaaccaa
     3541 catctggaac gattttaatc ggtggaaaag atattcgcaa aaattttaca gaagcaatgc
     3601 gaggtcttgg ctcgattgtg gaaaacccgg aattctatac atttttaacg ggacaagaaa
     3661 atttagcgta ttttgcccga atggattcgt cgataaaaaa agaacgtatt caagaagtaa
     3721 ccgagctagt tgggctagaa aagcggataa atgaccgagt ttctacgtat tcacttggta
     3781 tgcgccagcg tttaggcatt gctcaagcgt tactttcgaa tccgaaatta ttaattcttg
     3841 atgaaccaac aaacggttta gatccatctg gaattcacga aatgcgcgac tttatccgtg
     3901 ctctggctag aaatgaaggt attagtgtac ttgtttcttc ccatttatta agtgaaattg
     3961 aacttttatg tgaccgagtg gcgattatga cagatggaac gattattaaa accgatcaag
     4021 tttcacatct tcttagttct cgtgcacaat tacgctggct ggcgactcct tttgaacaag
     4081 ccaaagcatt tttggaaagt gtaactgaag tagaagtgga cggcgaatat ctcgtgaccg
     4141 cagtgaatga acatagcgcc gaatggaacg aacagttggt tgcaaaaggc attcaagtcc
     4201 atgaaattga taagaaaaaa ccatctctcg aagacctatt tcttgagtta acaggaggtc
     4261 atacgattga ttaatttagt ctataatgaa caattaaaac tttggcgcaa aaagcgactc
     4321 atcgttattt tggcgctagt ggcaattatc gtagcgattt tcacgtatgc acagttccga
     4381 cagcatcaag aagatgaaaa gcaagctggg acaagcgatt ggcatgtgca aacccaacaa
     4441 caaattgttg accttgaaaa taggctcgga acagggcgac tgccagaaga atatcaaaaa
     4501 tattttaaag tgcttgtcgg gcaactacaa tattatttgg ataatgacat caacccaaat
     4561 gcacctggag caccaacttt cctaaaaacg tttgtcgaaa atggtattag tttattgttt
     4621 ccgcttttta tcatggttat agcggccgac ttaattagtg ctgaaacaag tgcgggaacg
     4681 atgaaattcc tgctgacaag gcctgtgaag cgatggcgga ttttgacgag taaatatatt
     4741 tcaatgttgc tttcgatttc cgcgattatg gtattatccg ctgttattgc ctatctgatt
     4801 tctggaattg tgtttggtta cggtggctgg gatgcgccag ttctcaccgg atttggcatg
     4861 aaagatggtg ctgttacaac aacagacgtg taccaactgc cggtttggca actactgctc
     4921 atggagttcg gactcgcgtg gtttgtcagt gtcgtggtcg gcgtgttaac gatgtttgta
     4981 tcggtgctcg tccgctccac agctgccgta atgggaatta tgcttgcttc actcattacc
     5041 ggaaccattt taaccaacct cgtcagctct tggccgagcg cgaaatattt atttatggtt
     5101 aatttacaac taacgaatta cttaaacggc tcgagcccac ccgtcgaagg catgacattg
     5161 agtttctcga tgctcgttct gaccgcgtgg atgctagtcg cgtttatctt atcctatttt
     5221 attttcacca aacgagatgt gtattaaaga gcgcttaatg gcgctctttt ttgcggtcat
     5281 taaaagttac ttactttttg tgagcataaa acttttcttt ttaatagttt agttataaac
     5341 tatagttagt aatcaagaag gaggtacaaa caaatgatta aaggcattca tcacgtatcc
     5401 gcgctaacga aatcatttag cgagaaccat catttttatt cagacatatt agggctacgg
     5461 ctcgtaaaaa atacagtaaa tcaagacaat attcacatgc gtcacctatt ttacggagac
     5521 tatacaggaa gcccgggtac cttgttaaca tttttcgaag tacctcgtat cggctcaagc
     5581 tacaacgaac gcgccttttt cggaaacatc acccttggaa taccaaaagg cacaagctct
     5641 tactggaaaa aaaggctaaa cgattttgcg atatctttcc aaaaagaagg ccagacttta
     5701 accttacaag atcccgatac aatgggtatc atcctaacgg aaataccaga aaccatttct
     5761 aacccaatca tccacactga tatcccgtct gaaaagcaaa ttgttcggat tatcggcgca
     5821 gactatcacg tgccaaatcc ggccgcgacc agccagtttt tcacggattt atttggctta
     5881 gaaagtcaga atggggtatt agtagataaa gacaagacga gttttgcgaa acttcatgcc
     5941 acaagttcag acaaaaaatc gcgaacagga cgcgggacaa tcgatcacat tgcttatacc
     6001 gttgaaacca aagaagccgt tgatgaactt cacgatatag ctgttcgaaa cgatttgaaa
     6061 atagaagaat ttgttgaccg cgagtatttt aaaagtctat atattcgcga accaggtggc
     6121 ttaagaattg aatttgcaag tgctggcccc ggttttacaa ttgacgaacc gcttgaaaca
     6181 atgggcgaca acttagcctt accaagcttt ttagaagaaa aaagaacaga aattgaaact
     6241 tattttggag gagatttatc atgattaaag atttaaaagg aattcaccac gtaacagcaa
     6301 tgacaagtag tgcggagaaa aattatgcgt tttttacaga agttttagga atgcgtttag
     6361 tgaaaaaaac cgtcaaccaa gacgatattc atacgtatca tttgtttttc gccgatgaca
     6421 aaggttcagc gggaacggat atgacatttt ttgactttcc aaatttacca aaaggacgtc
     6481 acggcacaga cagtatttct cgcgtagctt tccgagtacc tagtgatgcg gcgcttgaat
     6541 actggcttga tcgttttgaa caattagaag ttcctcatag tgatatcaaa actctatttg
     6601 gcaaaaaata tctgacattc caagattttg acgaccaaca attacaactg atttcagatg
     6661 aaaataacga aggggtagca gctggaactc catggaaaaa cggaccagtc ccagaaaaat
     6721 atgcaattta tggcttagga ccagtctttt taacggttgt ttcgctcaaa aatatggatg
     6781 cgattttgca aacgattttt ggctttagaa aagtgacaga agaagacgga cttcatttat
     6841 acgaggttgg cgaaggtggt aatggggcgc aagtgattgt cgaagaacgt accgatattc
     6901 cagctgcaat gcaaggctac ggtggcgttc accatgtggc ttttcgagta gaagaccacg
     6961 aagaattgca aaaatggatt gaccgcatga atacaatcga agcacccaac tctggctatg
     7021 taaaccgctt ctactttgaa tcattgtatg tacccgtttc agaacgaatt ttgtttgaat
     7081 tcgcgacaga tggtccgggc tttgcaagtg atgaaccata cgaaacactc ggtgaaaaat
     7141 tagccttgcc tccattttta gaaccaaaac gcgcagaaat tgaaaaaatg gtacgtccga
     7201 ttaatacgaa acggagctga taaacgatgg aacacattta tattccaggg aaaaataagg
     7261 atttagcccc actattacta cttcacggga caggcggcga tgaaaagtcg cttgtcgaag
     7321 tggcggaatt tatcgcaggt gacgcggctg ttttatcgtt gcgcggtgat attaaagaag
     7381 gcggagcaaa tcggtttttc aaaagatttc acgatggcag cttagattta gaagacttgg
     7441 aaagtaaaac cgcagaatta atcactacaa cacgcgaact ggctgaaaaa tatcaattgg
     7501 attttgaacg aatgattgca gtagggtatt caaatggcgc aaacatcgca gccaacgcgc
     7561 tactacaagc agaagatagt ttccataaag cgattttgtt tcatgcgatg ccagctggaa
     7621 ataaacaacc cgaattttcg attagccacc gcaacgtatt tctgtccgct ggcttaaatg
     7681 atccacttat taccgcaaaa gcctccgaag aattggttga aatcctcgaa aaacggggcg
     7741 cgaaagtcga aacagtttgg acagcggctg ggcattctct tactatggaa gaacttgaag
     7801 aagcgaaaaa atggtatcaa aacaaccaga aatgagggaa gtagatgact atttttaaaa
     7861 gtgctgattt atctcaaaaa gaaaactaca aatttttaac aggaagtatt attccacgac
     7921 caattgcttt tgtaacgacg cttgctgaag acggggagac ggttaacgcc gccccgttca
     7981 gtttttttaa tgttgtttca agcgatccag cgatagtttc gatagctgtt caacgcgcga
     8041 atggcgagca aaaagataca gcgaggaatg cggcttttac gaaagaatta aatattcata
     8101 ttgttagtga gtcttttgtg gaagaaatga ataaaaccgc cgctcgactg gcaccagatg
     8161 tgagcgaaat cgatacaaca agcttgcatt tagagaaagt tcctggaatg aaaacaccga
     8221 agatttccga ggccaatatc gtgcttacag ctaaactaga acaaattatt ccgattaaaa
     8281 atgatgctgg tgaggttgtt tccgatttaa ttctggcacg tattttgaca tatgatttcg
     8341 cagatgaagt gtttgattct gagcatcact atattttgcc agaaaagctt gaaccagttg
     8401 ccagactcgc tggaaatgac tatacaaaac ttggcgatat tttccggatt gaaaggccaa
     8461 tttaacgaga aatagttgcg aaacaaaagc gaccatgtta aactaggggc aacttaaatg
     8521 aacggagggt tgcccatcat gcgttatatt agactacgtt tcccaaaaaa tctatgcaac
     8581 taatttaata gtgcgggaat atccatgctt atttagtatg ggtaacggga ttggtcttgc
     8641 gtgcatgtat ggcacccaaa ataaatatgg gtagaatgaa ggtggaatgc gcttcatttg
     8701 aaagcaagct agtatctttg gatgctattt ttgtgttttc ttctactcaa aaaccctgac
     8761 cgcgctgaat ctatttcagg aggtcctttt ttatggagaa aaaagtatta atcgttggta
     8821 taagtcagaa acaaaaagat tttgattatt caatggaaga attagccaat ttagcggctg
     8881 caaataatat ggaagtagtg ggcgaaatac ggcaaaatat cgaccgtgaa aatcgcgcta
     8941 cttatgttgg aaaaggaaaa gtggatgaaa tcaaagggct ggcagaaatg caagatgctc
     9001 gcttgattat ttttaacgat gaactttcac cgtcgcaaat tagaaaccta gaagaagcgt
     9061 tggaactgga tgtaatggac agaacaggct tgattttagc tattttcgcg aaccgagcaa
     9121 aaacaaaaga agctcaactc caagtccaaa tcgccaaatt acaatatgaa cttccgcgaa
     9181 tttttggaca aggcgaagac atggaccaac aaagcggaaa aggcggactt agcaaccgtg
     9241 gttcgggcga aaagaaaatt gaaaccgatc gccgtaccat caaataccaa atccgccatt
     9301 tacaaaaaga gttagacatg ctcgtggatg accgtgaagt acgccgtcgc aaacgaaaga
     9361 aaaatgaaat tcctgtggtg tcacttgttg gttataccaa tgctggaaaa tccacaacga
     9421 tgaatgggct agtacgtgct tatagtgaaa ctgctgaaaa acaagttttt gagaaagaca
     9481 tgctctttgc tacgcttgaa acaagtgtac gcgaaattgt tttgccagat aacaagcaat
     9541 ttttactcac agatacagtt ggttttgtta gcaaacttcc ccatcaatta gtgaaagcat
     9601 tccgctccac actagaagaa gcacgcgatg cagatttact cattcatgtg gtagattatt
     9661 cggatccgca ttataaaaca atgatgaaga cgacggaaga aacgttgaaa gctgttggtg
     9721 tggaggatgt tccagttatt tatgcataca acaaagcgga tttaatagaa ggagaaattt
     9781 atcctaagca aacggaaaat acaattgtct tttccgcgcg tgaaaaagaa agtttggaat
     9841 ttctaaccga agtaattcgt aaagaacttt ttgctagcta cgagaaagcg acttttttaa
     9901 ttccgtttga ggcggggaat gttgtcgctt atttaaatga tcatgcagat gttttagcta
     9961 ctgaatactt ggagaatggc acgcagattg tggctgaagt tagtccggcc gatttacaga
    10021 agctagcaga ataccaagta gctgagtaaa gcgagttcca gctgaatttg ctataatgaa
    10081 acatacagca aatttagtga ggagatttct aactatgaaa aaaactggat ggggtatact
    10141 tggggcagtt gctgctttca caggatatgc atactggtca accaaacatt taactgtaac
    10201 agattatgaa atagtatcag ataaaattcc agcagaatgg gacggcgcaa cttttgttca
    10261 gttgtctgat ctgcatagtg caagttttgg tttatataat aatcctttgc ttagtatcgt
    10321 gaatgaacta gcgccggatg ctgtttttct aacaggagat atgattgatg gagatgagtc
    10381 gccatatgta gcgatggcag ttgtgcgcaa attggctaaa gaattcccgg ttttttatgt
    10441 gagcggaaat catgagggtc gaagcgcatt ttatgaagat tttaaagcag acatggagaa
    10501 acatcacgtt actgtccttg aaaatgaacg ctattttcta aaaaaagatg gcgccgcaat
    10561 catggtagca ggcgtccggg atcctcgttt tgtaagagat gactgggcag aaaaagaact
    10621 accaaaagaa gtatgggaag aagcggcatt aaaagaagct ttagacgatg cgacagctaa
    10681 tttatcaccg gattacttta cgatattact ggcgcatcgt ccggagtttt ggccactata
    10741 ccaagcctat ccaattgatt tagtattatc tggacatgcg cacggcggtc aatttagact
    10801 acctttaaca gaaggccttt tcgcaccggg acaaggtctc atgccgaaat ggacagcagg
    10861 gattcaccgg gctggcggta aagcgcttat tgtgagccgc ggcttaggaa atgtcacgaa
    10921 actaccgcgc ttatttaatg acccagaaat cattcgaatg acacttagag caaaagggga
    10981 tgcttaggaa aagtgattta tttagataat gaagatgtac tcgatcaagc gtacaacttt
    11041 gcgatggaag aatatgcgct tcgttcttta gatgaaaatg aaacgtattt tatgttttac
    11101 cggatgaagc cgacgattat tgttggtaaa aatcaaaaca cgctggaaga aatcaaccat
    11161 gcttttgtca aagaacatca tatcgacgtt ctccgccgtt tatctggtgg gggagctgtc
    11221 tataacgacg aaggcaatat tagctttagc atgatcacaa aagatgatgg gaatagtttt
    11281 caaaatttcg cgaagttcac agaaccagtt attcgagcgc tccgcaagct tggtgtaaat
    11341 gctgaactga gtggtcgaaa tgatattgaa gtgaatggca aaaagataag tggcaatgcg
    11401 caatttgcaa caaaaggtcg actatatagc catgggactt tacttttcga tgtcgattta
    11461 tccatgctcg aaaaagcatt acaagtggat ccagagaaat acttatccaa gggtgttaaa
    11521 tctgtgcgca gtcgtgtaac aacaattcgc gaacatttag cggaagatat cgatattcta
    11581 acctttaaac aaattctact ggaatctatt tttgaaacga aagatatccc acgttatact
    11641 tttacggaag ctgacaagca aggaatcgaa aaattacgca cagaacgtta ccggaattgg
    11701 gactggacgt atggtaaatc accaaaagcc actataaaac gcaaaaaaag atttccagct
    11761 ggaactattg aattccaagt ttcactagaa aaaggtcaag taaaagaagc gaccatttat
    11821 ggggactttt ttggtacaga ggatgtggct gaattagctg ggaaaataat cggctgccgt
    11881 tttgaacgta aatctattca aaatgcttgg caagaaataa atgcgaaaga ctattttggt
    11941 ggaattgaaa aagaagcaat tttagatatg ttatttgaat aaagtttaaa actctgagat
    12001 atagattctc agagtttttt taatgcctaa agaaagcgat ttcaatttta tgttgaca
//
LOCUS       DASDXX010000074        11864 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.074, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000074 DASDXX010000000
VERSION     DASDXX010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11864
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.074"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..217)
                     /locus_tag="U0280_001546"
     CDS             complement(<1..217)
                     /locus_tag="U0280_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271497.1"
                     /translation="MIQLMVIAFFVILLVIMPKNNKEERKAAHLLIDKYGIQVAKKNN
                     PVRQMALLEVALGISTYRGSRKKTFIFI"
     gene            complement(538..1638)
                     /gene="ychF"
                     /locus_tag="U0280_001547"
     CDS             complement(538..1638)
                     /gene="ychF"
                     /locus_tag="U0280_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEM2271498.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGIV
                     EVPDHRLNKLTELVKPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICH
                     VTRCFDDENITHVEGRVDPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAVA
                     EYNVLVKLREAFENDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDD
                     NKYVQQVREFAASENSEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSA
                     YTLLGLATYFTAGVQEVRAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYG
                     SEQAAKEAGKVRLEGKEYEMKDGDVVHFRFNV"
     gene            complement(1789..2097)
                     /locus_tag="U0280_001548"
     CDS             complement(1789..2097)
                     /locus_tag="U0280_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2271499.1"
                     /translation="MEGMELASFQIISSVGAARSCIIEAMKFGRQRKFTEAYKKIDEA
                     NEFLSEGHKNHVQLIQKEADGGDVQISILFMHAEDQFMTTYTLRDVAYEMIAIWKEMK
                     "
     gene            complement(2103..4373)
                     /locus_tag="U0280_001549"
     CDS             complement(2103..4373)
                     /locus_tag="U0280_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEM2271500.1"
                     /translation="MAVYLDKEKPVSERVEDLLSKMTLAEKCGQLNQRMYGWEAFSRD
                     GETFHITEKFKEEVTRFEGIGALYGLFRADPWSKMNKDTGVSRKNAGKVANKIQRYVI
                     ENTRLGIPVLLAEEVPHGHQALDSESYPVNLARAASFNPELQKQVASAITEEISEKGV
                     HLALASALDILRDPRWGRAEECYGEDPYLAAELTAAITEGFQASGKIAVILKHFAAQG
                     EPIGGHNSGPVSIGVRELREIFLEPMRAGIRSGALGVMAAYNEIDGVPCHANKELLTT
                     ILREEMGFSGIVMADGCALDRLLKLNPDPKKAAKMALEAGVDLSLWDEVFPFLEESVE
                     KGILDEKVVDDAVRRVLQVKFQLGLFEQPFVEEEIQAPKSDWKQLNLQAAREGICLLK
                     NDFETLPLVGERKKIAVVGPSIDALYNQLGDYTAPQNESECVTVLEGIKKLLPKNWEV
                     VSEKGTEIREELPDGIQRAEVVAKEADAIVMVLGGSSARNFDMEFLNNGAVSSKGPNM
                     DAGENVDVADITLPQPQLDLFYAMKRTGKPVIVVMIQGRPIAIPEISSTADAILTAWY
                     PGSVGGTAIAEVLFGHYNPSGKLPVSIPRSSGQIPIYYNQKAVEYKEDYFDLTGKPLY
                     PFGYGLSYSAFEYQDLQIKQESIKIAELLGGQSVEVKVTLKNTSNVAGEEVVQLYLHD
                     MEASITRRKKELKAFKKVRIAAKQTATVTFKLDKSSFEIWSINNKYEVEPGGIEIFVG
                     GSSDTKLTGRVSIIGG"
     gene            complement(4408..4707)
                     /locus_tag="U0280_001550"
     CDS             complement(4408..4707)
                     /locus_tag="U0280_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271501.1"
                     /translation="MKNIMLMCNAGMSTSVLVRKMERVVEERNLELTIWAISETDFEK
                     NWRKADAILLGPQVNYMKDKVIDTVGDNVSVAVIDIVDYGRMNGEKVLDLAISLL"
     gene            complement(4722..6017)
                     /locus_tag="U0280_001551"
     CDS             complement(4722..6017)
                     /locus_tag="U0280_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2271502.1"
                     /translation="MKKFIEKLSWLSQKLGNQIHLKSMRDAFATILPFIMLAGFMVLI
                     NNVIIKPDGFMSAIISSETLTTWQGLGNSIVNGTLGIITILIGASVAYFLAQNRKFEN
                     PFAPALMTIALIVIFIPAVTEIVPIGAEKSVEVAGVLPIALMGSAGMFVGIVTALLAT
                     EVFIRLSKSEKMKIHISGDSVPPAVIKSFNVLIPTMLTILIFAFISFLVVTLFSLNLY
                     SLISAIIQEPLTFLVTSVPGFLTLMTISQMLYSIGIAGSGILGPIMDPVLLANMQENM
                     TAFANHTEIPHIINTTFRDVFGVMGGGGNTIALLIAIFIWSKRKDYREIATLSAAPGL
                     FNINEPVVFGLPIVYNLSLMIPFIISTPLCLCLAYFATKLHMISEVVVMVPWTTPVVA
                     SGFLATGGDWRAAVFQIFLIGVCVLLYLPFLKANDRIKA"
     gene            complement(6167..8083)
                     /locus_tag="U0280_001552"
     CDS             complement(6167..8083)
                     /locus_tag="U0280_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2271503.1"
                     /translation="MSASKLSLPRWKQIVHMLYLKMEFISGGELGEALAVNPRTIRND
                     IKVINQILMIGGNRIESLPGVGYRLVIGDEKALREALLDDSIGRANMNIVPMFAEDRA
                     DYIIRYLLLKNDYVKLETLSEELFVSKSTINLDILEVKRKLKENELKVEKRAGYGIRI
                     TGAELAIRFCFSRYLLVESTSPLITETEINFFGEVNLEMMEQIVVSNIAKYNIHMTDI
                     SVKNLIIHIAIAVCRVKDNCYVPATDLEDIEFSMPELRAAQGIIKEIDLSEGIRFPES
                     ETAYLLLHLSSKNRKSDFNNYREYIIVDKMLEKIKELYGYDFKQDQKMISNIALHLKP
                     AINRIKFNMNIQNPYLKNLKANYPLAFELGLVAKEVLEQELKTNVDEAEVGYLAIHFL
                     YGLDKEIGSEKQKVLIVCASGLGTSQLLESKVRKEFENTLEIVGVYSFKEYEQSGTAC
                     DFVISTVPLRMKLHPFIQVSPFLTKADIRNITALMKQDETKNQFEVDKVFKESLFLIS
                     DKKDKEQVLVDLASLLLENNIVGEDYLPSLFEREEIVPTYLGNGLAAPHPIEANVQET
                     AIGVCIFTGGGVKWNEEDQAQVIFMLAVKNKQQQQLATVYELISNLVESPKAMGELKR
                     VTSFEEFMRVLQTI"
     gene            complement(8294..9760)
                     /locus_tag="U0280_001553"
     CDS             complement(8294..9760)
                     /locus_tag="U0280_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEM2271504.1"
                     /translation="MTDRKNLTTNQGVPVGDNQNSMTAGRKGPTLIEDYVLIEKLAHF
                     DRERVPERVVHARGAGAHGKFVTKKSMKKYTMAKFLQEEGTETEVFARFSTVIHGQHS
                     PETLRDPRGFSVKFYTEEGNYDFVGNNLPVFFIRDAIKFPDVIHSLKPDPRTNIQDGN
                     RYWDFFSLTPEATTMIMYLFSDEGTPASYREIRGSSVHAFKWINEEGKTVYVKLRWIP
                     KAGIVNLSTEQASQIQAKEFNHASRDLYEAIENGDYPEWDLYVQVLDPKDLDNFDFNP
                     LDATKDWFEDVFPYEHVGTMTLDRNPDNIFAETESVGFNPGVLVRGMLPSEDRLLQGR
                     LFSYSDTQRHRVGPNYLQLPINSPKAPVANNQRDGHMPFKQQTSSINYEPNSYDTEPK
                     ENPAFIEPEQEIRGDISGRLIAEKPNNFGHAKEVWDRYSDAERAALVKNIVDDWSQVR
                     DDIKIRNLRNFYQVDPEFASRVAAGTGVNLEAHVADLK"
     gene            complement(9909..10112)
                     /locus_tag="U0280_001554"
     CDS             complement(9909..10112)
                     /locus_tag="U0280_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HEM2271505.1"
                     /translation="MFMEKKHFDLNDIVEMKKPHPCGTNRFKIIRMGMDIRIKCEGCG
                     HSVMIPRREFERKVKKILVKAEQ"
     gene            complement(10119..10970)
                     /locus_tag="U0280_001555"
     CDS             complement(10119..10970)
                     /locus_tag="U0280_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM2271506.1"
                     /translation="MAKGLGKGINALFNNVDTNEETVQNIAIKDIKPNPYQPRKIFDT
                     KAINELRDSIKIHGVLQPIILRNTDKGYEIVVGERRFRAAKEAKLKEIPAVVRDLTEE
                     EMMELSVIENLQREDLSPLEEAESYQFLMKKLGLTQAKLAERVGKSRPYIANFVRLLT
                     LPEEVQVMLRDGSLSAGHGRVLLGLKLKKNIIPTAKKAVAQGLTVRQLEDVVNNLNEN
                     VSRETIKPARVPIFIRESESQLRDKFGTAVSIKRRDKKGKIEIEFLSDDDLDRILEIL
                     DIQFDDE"
     gene            complement(10963..11724)
                     /locus_tag="U0280_001556"
     CDS             complement(10963..11724)
                     /locus_tag="U0280_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEM2271507.1"
                     /translation="MSKVIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGN
                     ASSGVGVNKGEIEHCIYDVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAI
                     SREIRLKKAIDSIRDDYDYVIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQ
                     LLNTIRIVQKHLNEDLQIEGVLLTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPRNVR
                     LSEAPSHGKPILLYDAKSKGAEVYLELAKEVVAHG"
BASE COUNT         3508 a         2621 c         1831 g         3904 t
ORIGIN      
        1 caataaaaat aaaggttttc ttacggctac ctctataagt agaaatacct agcgctactt
       61 ccagcaatgc catttgacga accggattat tcttctttgc aacttgaata ccatatttat
      121 caattagtaa atgagctgct tttctttctt ctttgttatt ctttggcata attactagaa
      181 gaataacaaa aaatgctata accattaact gtatcaaaaa aaacactcct ataataaaat
      241 ttatagttaa ttatagcatc attccgctct ctgcaaattg tatattttgt gaattaatta
      301 gtgcaaataa attaaacatt cccttatata tattgacaaa atcgcttaat tgattgtttg
      361 tttcacgtga aacatattta ttattatttt cactttctat attaaaagta taaatctgtt
      421 caaaaattag cttaatactc ttttgaagta tatcagtaac gcagaattta tgaactaacc
      481 taaaaaacaa tcttttgaca tacttacttg tcaaaagatt gtttcacgtg aaacatatta
      541 aacgttaaag cggaaatgaa caacatctcc atctttcatt tcgtattctt taccttccaa
      601 gcgtactttt cccgcttctt tggctgcttg ctctgagccg tattcaagta aagcgtcata
      661 tgcaacaact tcagcgcgaa tgaatccacg ttcgaaatca gtatgaatga ttccggcaca
      721 ttgtggagct ttcatacctt tgatgaatgt ccaagcgcga acttcttgaa cgcctgctgt
      781 gaagtaagtc gctaagccaa gcaatgtata cgcagaacga atcaattggt ctaaaccaga
      841 ttcttcaatt ccaagcgctt ctaaaaactc tagcttatct tcgtcttcaa gttcagcaat
      901 ttcttcctca gcgcgagcac atactacaat aacttcagag ttctcactcg cagcgaattc
      961 gcgtacttgc tgtacatatt tgttatcgtc cggactagaa acatcttctt cacttacatt
     1021 tgctacatat aaaactggtt ttcttgtaag taagaaaagg ttgcgaacga ttttctcttc
     1081 ttcttcgtta aattcaatcg cacgagctgg tttgtcattt tcgaaagcct cacgtagttt
     1141 aactaaaacg ttatattcag ccacagcatc tttatctttt tgtttagata gcttctcaac
     1201 gcgtccaatg cgcttctcta ctgtttctaa gtccgctaag ataagttcta agttgattgt
     1261 agaaatatcg tctagcgggt ctactcggcc ttctacgtgg gtgatatttt cgtcatcaaa
     1321 acaacgagtt acatggcata ttgcatccac ttgacgaata tgggataaga atttgtttcc
     1381 aagtccttcc cctttactag caccttttac aattccggcg atatctgtaa attcaaaagt
     1441 tgttggaacg gtctttttcg gttttacaag ttccgttagt ttgtttaatc tgtggtcagg
     1501 aacttcaaca attcctacgt tcgggtcaat cgtcgcaaac ggataattcg cagcctctgc
     1561 tcctgctttt gtgattgcat taaaaagtgt cgatttccca acattaggaa gcccgacaat
     1621 accagctgta agtgccatta tatataaact ccttttcatt aacttcattt tgaaaatgcc
     1681 tgtcaaatag acattttttc actaacgtat attataaagg tttttcaaac aaaaagccac
     1741 ccaccaaaaa acgaaaaccc tttaatcagt aaaggatttt cgttttaatt acttcatctc
     1801 tttccaaata gcaatcatct cataagctac atcgcgtaat gtataagttg tcataaattg
     1861 atcttccgcg tgcatgaaga ggatagaaat ttgtacgtct ccgccatctg cctctttttg
     1921 aattagttgc acatgatttt tatgaccttc gctaagaaat tcattagcct cgtcaatttt
     1981 tttatatgct tctgtgaatt ttctttgtct tccgaatttc atcgcctcaa taatgcaact
     2041 tcttgcggcg ccaacagaac taattatttg aaatgatgcg agttccattc cttccatttt
     2101 cgctagcctc ctatgattga aactcgccct gttaatttag tatcagaact tccaccaacg
     2161 aaaatttcta taccaccggg ctccacctca tatttattgt taattgacca tatttcaaaa
     2221 cttgatttat ctagcttaaa tgtcactgta gctgtttgtt tcgctgcaat acgaaccttt
     2281 ttaaatgctt ttaattcttt ttttcttcta gtaatacttg cttccatatc atgaagataa
     2341 agttgcacaa cttcttcacc ggctacatta gaggtgtttt ttaaagttac tttcacttct
     2401 acagattgcc cgccaaggag ttctgctatt tttatagatt cttgttttat ctgtaaatct
     2461 tgatattcaa aagcgctata acttaaacca tagccaaatg gatagagcgg cttaccagtt
     2521 aaatcaaagt agtcttcttt atactccact gccttttgat tgtagtaaat aggaatctgc
     2581 ccggaggatc ttggtatgct gactggtaat ttacctgaag gattgtaatg accgaaaaga
     2641 acctcagcaa tcgccgttcc accaacactt cctggatacc aagctgtgag aatcgcatct
     2701 gctgtcgaac taatttctgg gatagcgatt ggtctacctt gaatcattac gacaattaca
     2761 ggctttccag tacgcttcat tgcgtaaaac aaatctaatt gcggttgtgg aagcgtgata
     2821 tcagcaacat ccacattttc accggcatcc atgttcgggc ccttagagct taccgcgcca
     2881 ttatttaaaa attccatgtc aaaattccgc gcacttgaac caccgagcac cataacaatg
     2941 gcgtctgcct ctttagcaac cacttctgct ctttgaatgc catccggaag ctcttcacga
     3001 atttcagtac ctttttcaga aacgacttcc caatttttag gaagcagttt ttttatccct
     3061 tctaacacag tgacacattc tgattcattt tgcggagctg tataatctcc caactgatta
     3121 taaagcgcat ctatgctagg accaacaaca gctatttttt tccgttcgcc tactagaggt
     3181 aatgtttcga agtcgttttt caaaagacaa ataccctctc tagcggcttg taaatttagt
     3241 tgtttccaat cagacttcgg tgcttgaatt tcttcctcta caaacggttg ttcaaatagc
     3301 cctaattgga atttcacttg aagcactcgc ctcacagcat catcaacgac cttttcatca
     3361 agaatgcctt tttccacgct ttcttcaaga aatggaaaca cttcatccca caaactcaaa
     3421 tccacaccgg cttcaagagc catttttgcg gctttttttg gatcaggatt tagttttaat
     3481 aatctatcaa gggcacaccc atctgccata acaatcccgg agaatcccat ttcttctcgc
     3541 aaaatagttg ttaaaagctc tttgttcgcg tggcatggca ccccgtcaat ctcgttgtaa
     3601 gctgccatga cgccaagagc accacttcta attcccgcgc gcattggttc caagaaaatt
     3661 tctctaagtt cccttacgcc aatagaaact ggtccagaat tatgcccgcc aatcggctcg
     3721 ccttgtgccg caaaatgttt taaaataaca gcaatcttcc cactcgcttg aaagccttct
     3781 gtaattgccg ctgttaattc cgctgcaagg tatggatctt caccgtaaca ctcttcagcg
     3841 cgtccccaac gtgggtctcg aagtatgtct aatgctgaag caagtgctag atgaactccc
     3901 ttttcggaaa tttcttctgt aatcgcactt gcgacctgtt tttgcaactc tggattaaaa
     3961 gaagcagcac gagctaaatt taccggataa gattcgctat ctaacgcttg gtgaccgtgc
     4021 ggaacttcct cagctaatag tacaggaatc cctaggcgcg tattttctat cacatagcgt
     4081 tgaattttat tagctacttt gccagcattt ttccgactta cacccgtgtc cttattcatt
     4141 ttggaccatg gatcagcgcg gaacagaccg tataaagcgc ctataccttc aaatctagtt
     4201 acttcctctt taaatttttc cgtgatatga aacgtttcgc catctcttga aaaagcttcc
     4261 cagccataca ttctttggtt tagttgacca catttttctg ctaaggtcat cttggaaagt
     4321 aagtcttcta cacgttctga aactggtttc tccttatcca aataaacagc catattcttt
     4381 ctcctccttg ctaaaaaact aagaatgtca caataaacta attgctaaat ctaatacttt
     4441 ttcaccattc attcgaccat aatcaacgat atcaataact gccaccgata cattatcacc
     4501 aactgtgtct atgaccttat ctttcatata attcacttgc ggtccaagta aaatcgcatc
     4561 agctttacgc caattttttt cgaaatccgt ttctgaaata gcccagatag tcagttctaa
     4621 attacgttct tctacaacgc gttccatttt cctcactaaa acgcttgtag acattcccgc
     4681 attacacatc aacataatat ttttcataaa aatccctcca attaggcttt aattctgtca
     4741 ttggctttta agaatggtag gtaaagaagt acgcagacgc caatcaagaa aatttggaat
     4801 actgcagcac gccagtcccc acctgttgca aggaagccgg aagcaacaac tggtgtcgtc
     4861 cacggaacca ttacgactac ttctgaaatc atatgcagct ttgtcgcgaa gtaggctaaa
     4921 cataagcaaa gcggtgttga aataatgaac ggaatcatca aactcaagtt ataaacaatc
     4981 ggaaggccaa atactaccgg ttcattgata ttaaatagac caggagctgc cgataaagta
     5041 gctatttcgc gataatcttt tcgttttgac caaataaaaa ttgctattaa cagcgcaata
     5101 gtatttccgc cgccgcccat aacgccaaaa acatcacgga aagtagtatt aataatatgc
     5161 ggaatctctg tgtgattcgc aaatgctgtc atattttctt gcatatttgc caaaagaact
     5221 gggtccataa tcggccctaa aatcccactt ccagcaatac cgatagaata aagcatttgt
     5281 gaaatcgtca ttaacgttag gaaccctgga acacttgtaa ctaagaatgt taatggttct
     5341 tgaataattg cgctaattaa agaatacaaa ttcaagctga ataatgtcac tactaagaat
     5401 gaaataaacg caaaaataag tattgttaac attgtcggaa taagcacatt gaatgattta
     5461 attacggctg gaggtacgct atccccagaa atatggattt tcattttctc actcttagaa
     5521 agacgaatga atacttctgt tgcaagaagc gccgttacaa tcccaacgaa catgcccgcc
     5581 gaacccatca aggctattgg taatactcca gcaacttcca cagatttctc tgcaccaatc
     5641 ggcacaattt ctgttacagc tgggataaaa ataacaatca gtgcaatggt cattaacgct
     5701 ggtgcaaacg gattttcaaa cttccggttt tgcgctaaaa agtaagcaac tgaagctcca
     5761 atcaaaatag taataattcc taaagtcccg ttcacaatac tgttacctag cccctgccaa
     5821 gtcgtaagtg tttcggaact gatgatcgcc gacataaaac catccggctt aataatcacg
     5881 ttattaatta aaaccatgaa tcctgctaac ataataaaag gtaaaatagt agcaaatgca
     5941 tcacgcatag actttaaatg aatttgattt ccaagcttct gcgataacca acttaatttc
     6001 tcgatgaact ttttcaattt tttatacctc ctttgatatt acaataagtg tagcgctttc
     6061 tttttgttaa ataaatctag tctttttccg catctgtatt ttacatgcgg aaataaaaaa
     6121 aggcccgtta acttttctct ctaagaaagt ctaacgaacc ttttggttat atcgtttgta
     6181 acacacgcat aaattcttca aaacttgtca cacgttttag ctctcccatt gcttttggac
     6241 tttctactaa attgctaata agctcataca ccgtcgcaag ctgctgttgt tgcttgtttt
     6301 ttaccgctaa catgaaaatc acttgtgcct gatcttcctc attccacttt accccaccgc
     6361 cagtaaaaat acatactcca atagctgttt cttggacgtt tgcttcaatt gggtgtggtg
     6421 ccgcaagtcc attacctaaa taagtcggca caatttcttc gcgctcaaaa agtgatggta
     6481 aatagtcctc gccaacaata ttattttcca gcaaaagact cgctaaatct accagaactt
     6541 gctctttgtc ctttttatca ctaattaaga ataacgattc cttaaaaacc ttgtccactt
     6601 caaattggtt cttcgtctca tcttgcttca ttaacgcagt gatattacga atatccgcct
     6661 ttgtcaaaaa tggcgatact tgaataaatg gatgtaactt cattcgcagt ggtactgtag
     6721 agataacaaa gtcacatgcc gttccactct gctcatattc tttaaatgag tacacgccga
     6781 ctatttcaag cgtattctca aactcttttc gtactttaga ttccaaaagt tgcgacgtcc
     6841 ctaaaccaga agcacaaaca atcaatactt tttgcttctc agaccctatt tccttatcta
     6901 agccatacaa aaagtgaata gccaaatatc ctacttccgc ttcgtctaca tttgttttta
     6961 actcctgctc aaggacttct ttagcaacca accctaattc aaaagctagt ggataattag
     7021 cttttagatt ttttaaatac gggttttgta tattcatatt aaatttaatt ctgttaattg
     7081 ctggctttaa atgcaaagcg atattggaaa tcattttctg gtcttgctta aaatcataac
     7141 cgtacagctc tttaatcttt tctaacatct tatccacgat gatatattct cggtaattat
     7201 taaagtcact ttttctgttt ttcgaactaa ggtgtagcag cagataggca gtctcacttt
     7261 ccgggaaacg aattccttct gaaagatcta tttcttttat aataccttga gccgccctta
     7321 attccggcat actaaattca atatcctcca aatctgttgc aggtacataa caattatctt
     7381 ttacacgaca tacagcaatt gcgatatgaa taatcaaatt tttaactgaa atgtccgtca
     7441 tgtgaatatt atatttcgct atattagaaa cgacaatctg ctccatcatt tccaaattaa
     7501 cttctccaaa aaaatttatt tctgtttctg taataagcgg gcttgtagat tccactaaca
     7561 aatatcttga aaagcaaaat cggatagcaa gttctgcacc agtaattcta atgccatagc
     7621 cagcccgttt ttccactttc aactcatttt ctttgagttt tcgtttcact tctaaaatat
     7681 ccaagtttat cgtagactta ctaacaaaaa gctcttctga caacgtctcc agctttacat
     7741 agtcattttt gagtaataaa tatcgaataa tataatctgc tctatcctct gcaaacatcg
     7801 gtacaatatt catattagct cttcctatcg aatcgtccaa aagagcttca cgcagcgctt
     7861 tttcatcacc aatgaccaga cgatatccta caccaggaag tgattcgatt ctgtttccgc
     7921 ctatcatcag tatttgatta attactttaa tatcatttct aattgtccga gggttaacag
     7981 ctaatgcctc ccctaattct ccaccgctaa taaactccat cttcaaataa agcatatgaa
     8041 ctatttgttt ccatctaggt aatgataatt ttgaagcact cacgcagctc cactcctcac
     8101 gacaattaat ttaagctatt tcatcttgat tataagccta tcacctgata acgacaagtc
     8161 ttccagaaat agtagcaagt atttcgataa aaagcaatat cgttaaaaat gcctttactc
     8221 caatcttcta gcccaaaaag tttcacgtga aacataaaaa agcgaaaacc ctaaaaagga
     8281 ttttcgcttt gatttatttt aaatctgcta catgtgcttc gagattaaca ccagttcccg
     8341 cagccactcg actagcgaat tccggatcta cttgatagaa attacgtaag ttgcggattt
     8401 taatatcatc acgtacttgt gaccaatcat cgacaatgtt tttcacgagt gcagcacgtt
     8461 ctgcatctga ataacgatcc catacttctt ttgcatggcc aaagttattt ggtttttctg
     8521 caatcaggcg cccagaaata tcaccacgga tttcttgctc tggctcgata aacgctggat
     8581 tttcttttgg ttctgtatcg taactatttg gctcataatt aatcgaactt gtttgttgtt
     8641 taaacggcat atgaccgtca cgttggttgt tcgcgacagg cgctttcgga ctgttaattg
     8701 ggagttgtaa gtagtttggc cctacacgat gtctttgcgt atccgagtaa gagaataaac
     8761 gaccttgcaa taaacggtct tcagaaggaa gcattccacg tacaagtacc ccaggattaa
     8821 aaccaaccga ttctgtctcc gcaaaaatat tatctgggtt gcggtcaagc gtcattgttc
     8881 ctacgtgttc ataaggaaat acatcttcaa accaatcttt tgttgcatct aatggattaa
     8941 aatcaaagtt atccaagtct ttcggatcca acacttgcac atataaatcc cactctggat
     9001 agtctccatt ttcaattgct tcatacaaat cacgacttgc atggttaaat tcttttgctt
     9061 gaatttgaga agcttgctcc gtcgaaaggt tcactattcc cgcttttgga atccagcgca
     9121 gttttacata aactgttttg ccttcttcgt taatccattt gaacgcatga acactagagc
     9181 cacgtatttc gcggtaagaa gccggcgttc cttcatcact gaataagtac ataatcatcg
     9241 tcgtagcttc cggtgtaagg ctaaagaaat cccagtaacg gttgccatct tgaatatttg
     9301 tgcgtggatc aggcttcaag gaatgaataa catccggaaa cttaatcgca tcacgaatga
     9361 agaataccgg caaattattt ccgacaaaat cataattccc ttcttctgta taaaacttaa
     9421 cggagaaacc gcgtggatca cgtaatgttt ctggagaatg ttgcccatga attactgttg
     9481 aaaaacgagc aaaaacctcc gtttccgttc cttcttcttg caaaaattta gccattgtat
     9541 attttttcat gcttttctta gtgacaaatt tcccgtgcgc accagcacca cgagcatgta
     9601 caacccgttc tggtactcgc tctctatcaa aatgtgccaa tttctcaata agcacataat
     9661 cttctatcaa agttggtcct ttacgtcccg ctgtcatcga attttggtta tcaccaactg
     9721 gcacaccttg attcgtcgtt aaattttttc tatctgtcat atgtatatac ctccataaca
     9781 attctatatc attttttatt tgtaataatt attaaatgat actatttata ttttaaagaa
     9841 ggaagagaca aacttcaact aaaaggctta aaaaagaaca gacgacctaa ttcatcgtct
     9901 gttccctatt attgttcagc tttaactaaa attttcttca cttttcgttc gaactcgcgg
     9961 cgggggatca tcacactatg accacaacct tcgcacttaa tccgaatatc catccccatg
    10021 cgtataatct taaatcgatt ggtaccacaa ggatgaggct ttttcatttc cacaatatca
    10081 tttaaatcga aatgcttttt ttccataaac atcacaacct attcatcatc aaactgaata
    10141 tctaaaatct ctaaaatgcg atctaaatca tcatcagata aaaattcaat ttcaatttta
    10201 ccttttttat cgcgacgttt aatcgagaca gccgtaccaa atttatcacg taattggctt
    10261 tcgctttcac ggataaagat aggaactcta gccggcttaa ttgtttcacg tgaaacattt
    10321 tcatttagat tattaaccac atcttctaat tgtcgtactg tcagcccttg cgccacagct
    10381 tttttagccg ttgggataat atttttctta agtttcaaac ctagtaacac tcggccatgt
    10441 ccagctgaca atgagccatc acgtaacatt acttgaactt cttcaggtaa tgtcaaaaga
    10501 cgaacaaagt tagcgatata tggtctactt ttcccaacgc gttctgctaa ttttgcttgc
    10561 gttaagccca attttttcat aaggaactga tatgattccg cttcttcaag tggagataaa
    10621 tcttcgcgtt gtaagttttc aatgacagaa agctccatca tttcttcttc cgttaaatca
    10681 cgtacaactg ctgggatttc ttttaattta gcttcttttg ctgcacgaaa tctacgttca
    10741 ccaacaacaa tttcatatcc tttatctgta tttcttaata ttattggctg caaaacaccg
    10801 tgaattttaa tggagtcacg taattcattg attgctttcg tatcaaagat tttacgtggt
    10861 tgatatggat ttggcttaat atcttttata gcgatatttt gtacggtttc ttcattcgta
    10921 tctacattat taaatagtgc attgattcct ttacctagac ctttagccat gtgcaaccac
    10981 ttcctttgct aattctaaat aaacttcagc accttttgat tttgcatcat ataacaaaat
    11041 cggttttcca tgactaggtg cttcacttag acgtacattc cgtggaataa ttgtattaaa
    11101 tactttgttt tggaagtatt ttttcacttc ttctattact tgaataccta gatttgttct
    11161 agcatcaagc attgttagta aaacaccttc aatttgtaaa tcctcattga gatgcttttg
    11221 gacgattctt attgtattta gtaactggct taaaccttct aacgcgtaat actcacattg
    11281 aacaggaatt aaaacagaat ctgctgctgt taatgcgttt aaagtcaaaa gcccaagtga
    11341 tggcggacaa tcaataatca catagtcata atcatcacgg attgagtcga ttgctttttt
    11401 caatctaatt tcacgagaga tagctggaac tagctctact tctgcacctg cgagttgaat
    11461 tgtagctgga ataacattca aattatccaa gtctgttttt tgcaacacat cttgaatggc
    11521 tacatcgtca actagtacat cataaataca atgttcaatt tcacctttgt taacaccaac
    11581 gccacttgat gcattacctt gtgggtcaat atcaactagt aacactttct tacctaaaaa
    11641 agctaggctc gagcttaaat tcaccgatga tgtcgtctta ccaaccccac ctttttggtt
    11701 tgctagtgca atcactttgc tcaatctttt tcaccaaccc ttattttgta ccgagatttc
    11761 cggttctttt atcttctatt ctaccaaaag attttcattt agtcttacaa aaagtaaaaa
    11821 taaattgaaa ttcgtatttt gaaagcttaa aaatggtgaa aata
//
LOCUS       DASDXX010000075        11740 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.075, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000075 DASDXX010000000
VERSION     DASDXX010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11740
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.075"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            126..431
                     /locus_tag="U0280_001557"
     CDS             126..431
                     /locus_tag="U0280_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2271508.1"
                     /translation="MENAKQSLDEETLFSVTQIFKALSDPTRVQILNLLQDREYSVNE
                     IARTLAFNQTTVSHQLRFLKNLRLVKSRREGTTIYYMQDDNHVLELLTQAIRHVHHH"
     gene            537..923
                     /locus_tag="U0280_001558"
     CDS             537..923
                     /locus_tag="U0280_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271509.1"
                     /translation="MKKLSPMQKFIVIIGIIVMIIIAILAVVWNSNLTAVIGLSVVQF
                     IIIQFVCYVGIYSHMKVGTARGTKLFSWGILTTLLFSAIIFIFATDNFRTYSAAMIAL
                     IGYAAALMMREIENTNPANKKQKREE"
     gene            945..1592
                     /locus_tag="U0280_001559"
     CDS             945..1592
                     /locus_tag="U0280_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2271510.1"
                     /translation="MGIHQYFQSLSDLENIYRCPGKFKYQEHSVAEHSYKVTSIAQFF
                     GAVEEEAGNEVNWRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKN
                     FIEREIPETYQPIYRHLLKEGKDSTLEGKILAISDKVDLLYESFGEIQKGNPENIFVE
                     IYSEALATIYQYREMASVKYFLKEILPDMLAEKGIEKTELPQLTTEITTKALRDA"
     gene            1613..1852
                     /locus_tag="U0280_001560"
     CDS             1613..1852
                     /locus_tag="U0280_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbA family protein"
                     /protein_id="HEM2271511.1"
                     /translation="MDQIISALIFPCLLVILFARITYNRYVALLLMVILIVASAKLGY
                     TNSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF"
     gene            2103..4079
                     /gene="uvrB"
                     /locus_tag="U0280_001561"
     CDS             2103..4079
                     /gene="uvrB"
                     /locus_tag="U0280_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEM2271512.1"
                     /translation="MKDKFELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTG
                     KTFTVSNVIQEVNKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYV
                     PQSDTYIEKDASINDEIDKLRHSATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVS
                     LRVGMEISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFG
                     DEIERIREVDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIVNIKAELEDRLQVLRA
                     DNKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQ
                     MVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFI
                     SATPGPYELEKNPDVIEQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLI
                     TTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREG
                     IDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSIGE
                     TERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAADEREAVKQHDLSKMSKKERDVF
                     IEGMEHEMKEAAKALDFERAAELRDALLEIKAEG"
     gene            4087..6957
                     /gene="uvrA"
                     /locus_tag="U0280_001562"
     CDS             4087..6957
                     /gene="uvrA"
                     /locus_tag="U0280_001562"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM2271513.1"
                     /translation="MDKEKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLGQMDKPDVDLIEGLSPAISIDQKTTSRNPRSTVGT
                     VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLEYPEKTRIQIMAPIVSGK
                     KGTHKKTIEEIKKEGYVRIRVDGEIYDINDEIEIEKNKKHSIEIIIDRIVIKEGINTR
                     LYDSIEAALRLADGYAVVDIMGDKELLFSEHYACPYCGFSVGELEPRMFSFNSPFGAC
                     PTCDGLGTKLEVDVDTVIPDRSLSLNEGAIIPWRPISSQYYPQMLASACKEFGIDMDT
                     PLEKLTKEELDIILNGSKDKEFYFEYKNDFGMTRETWIPFEGILPNIERRYRETNSDF
                     TRDQMAQYMTDLPCPSCKGYRLKEETLSVKVNNHHIGQISEFSINEALDFFDGLELSE
                     KETQIAAPIFKEVRARLGFLKNVGLDYLTMSRAAGTLSGGEAQRIRLATQIGSRLTGV
                     LYILDEPSIGLHQRDNDRLISTLQSMRDIGNTLIVVEHDEDTMMAADYLIDIGPGAGE
                     HGGRIVAAGTPEEVAKNKNSITGDYLSGKKFIPVPAKRRKGNGLELEIIGAKANNLKN
                     VNAKIPLATFSCVTGVSGSGKSSLVNEVLRKALARKLNRNHAKPGEHKEIKGIENLEK
                     IINIDQSPIGRTPRSNPATYTGAFDDIRDLFASTNEAKVRGYKKGRFSFNVKGGRCEA
                     CKGDGIIKIEMHFLPDVYVPCEVCHGKRYNGETLDIRYKGKNIAEVLEMTVEEGLEYF
                     TNQPRIARKLQTIVDVGLGYIRLGQPATTLSGGEAQRVKLASELHKRSNGKSFYILDE
                     PTTGLHADDIGRLLKVLQRLVEENGDTVLVIEHNLDVIKQADYLIDLGPEGGDGGGQI
                     IATGTPEKIARSKKSYTGKYLKPILERDKERTEERIATAKKK"
     gene            7166..8428
                     /locus_tag="U0280_001563"
     CDS             7166..8428
                     /locus_tag="U0280_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 domain-containing protein"
                     /protein_id="HEM2271514.1"
                     /translation="MENERKRILELVKQGIISTEEALTLLENISKKEGKTAAKENIRR
                     SAAPREEEQVEEETKEEPSYDYSKGWNNQGNPYTPPKSRKRRPEPTPENHERDEEEGG
                     ENSSKDREDSMRNMVNDLSQAGEKIGSFLNSAFKQVKDMPFPFLTSTKIERDFIYHDT
                     TLSILEFEIANGNIEFKPSDSNDIKVHAMIKLFKEYPEDEALKIFFDKTTLRVDEETL
                     RFESKSKQIVTNLTVYLPRREYDYVSVKMLNGNFHMDELSGRDLFVKTTNGNISIGTL
                     NATLAEIESINGNVRIQNGEIRDVALKTFNGNVAVKGNYYSTNLQTKNGNVNYQLTGN
                     EATFLKAKTGAGNIDVVVPAAIGVDGRFHTNLGKLLLDLKDAEILESKTESVSKSIIF
                     TKLPDAADSSLKIEAEATTGSVKIRDVK"
     gene            8495..9706
                     /locus_tag="U0280_001564"
     CDS             8495..9706
                     /locus_tag="U0280_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM2271515.1"
                     /translation="MDKKLRRSRVDRKVGGVFGGLAEFLGIDATLLRLIYIIITIITM
                     KTGIAIIAYIVALFVIPSSDTSNEEVLERHRRRVEEKRNRHLGRNQARQEVREAMRNS
                     HHHRRPRPENAEPIHHGARKKEARPRPVREFNFDNATFRSFTIRVATGDVIIRSWDKE
                     QMKIRAVLAVHEKARSIRQLSEEKLWDYFFSQTMLDISPDNFTFESKNELLKTDLVVT
                     IPKRLYEQVKIQLLNGNLKYDDTAAEDAIIKTRHGDIRSSGASGKFLSTESADGEIFF
                     KRSTVENVDMSTAKGDIALQGSFLTTIAKAAQGDVEYILENDTSSASDLEAPNGDIRI
                     QIPPTWNVDGTLGTKKEKIYFDLKNAKIWDDAERTFVFTQNAEEISMATLQAKVGNGI
                     IKVSELETKNV"
     gene            9730..9930
                     /locus_tag="U0280_001565"
     CDS             9730..9930
                     /locus_tag="U0280_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM2271516.1"
                     /translation="MKKLYKSSSQKMIAGVCGGLAEYFGIEVTIIRLLWAGAVLFFGT
                     GILLYILAAIIMPTATPESEWE"
     gene            9939..10292
                     /locus_tag="U0280_001566"
     CDS             9939..10292
                     /locus_tag="U0280_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEM2271517.1"
                     /translation="MRWIIGVIINSVLFVALSGFFTSFHVDGFTTALLASFILAILNM
                     LIRPILLLLTLPINIFTLGLFTFVVNAIMLEMTTFFIGDSFQIDGFGTALILAAIMAF
                     ANMIINSVLWGNKEK"
     gene            10479..11417
                     /locus_tag="U0280_001567"
     CDS             10479..11417
                     /locus_tag="U0280_001567"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEM2271518.1"
                     /translation="MTKSVTVKDLKERLNLELICSETGLERPISTSDLSRPGLELTGF
                     FSYYPEDRVQLFGMTEISFSEGMEPEERLKRYKQMCTKRTPAFVISRNLEVPKELVAA
                     AKEADIPVLRSRLKTTRLSVYITNYLESRLAPVISMHGVLVDIYGLGVLITGSSGVGK
                     SETALELVKRGHRLVADDNVEIRQEDEMTLIGSSPAIIEHLLEIRGLGIINVMTLFGA
                     GAVRSSKKITIVVHLENWDPDKHYDRVGLDQEKTKIFDMDIPKITVPVRPGRNLSVII
                     EVAAMNFRLKNMGYNAAEQFTQDLNNLIGHNSSMND"
     gene            11503..>11740
                     /locus_tag="U0280_001568"
     CDS             11503..>11740
                     /locus_tag="U0280_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM2271519.1"
                     /translation="MGNGVQPLDPVAIQIGSISVKWYGVIIASAVVIALLLALSEANK
                     RKMDKEIIVDLLIWAIPISIISARIYYVIFEWDFY"
BASE COUNT         3970 a         1982 c         2417 g         3371 t
ORIGIN      
        1 agaaaatctt gtttttgctc atatttaatc attttttaat agatgtgttg ttaaacttgc
       61 ggaatcattc ctatttaagt atcatatgag tatatgaaca tatatggaaa atggagtgat
      121 atttaatgga aaacgcaaaa caatctttag atgaagaaac gctatttagt gttacgcaga
      181 tatttaaggc gctttctgat ccaacgcgtg tgcagatttt aaatttgctt caagaccgcg
      241 aatactctgt gaatgaaatt gcgcgaacac ttgcgtttaa ccagacaact gtttctcacc
      301 agctgcgttt tttaaaaaac ttaagacttg tgaaatcaag acgtgaaggc acgacgattt
      361 attatatgca agatgataat cacgtattag aattactcac acaagcaatt cgccacgtgc
      421 accatcatta agtaagaacg ctcagaaaac cttttaggaa tgatgggtgt tttttatccc
      481 aaataaacag agattatggt aaagtaagta acaaataaaa gcttggagga agtattttga
      541 agaaattatc accaatgcag aagttcattg ttattatagg gattattgtg atgattatta
      601 ttgcgatttt agcagttgtt tggaatagta atctcacagc agttattggt ttatctgttg
      661 tgcaatttat tatcattcag ttcgtttgtt atgttggtat ttattcgcat atgaaagtcg
      721 gaacggcgcg cggaacaaag ttgtttagct ggggaatact gacgacactt ttattttcag
      781 caattatttt tatttttgct accgataatt ttagaactta ctcagccgca atgattgctt
      841 taattggtta tgctgcggcg ctgatgatgc gtgaaatcga aaacactaat ccggccaata
      901 aaaaacaaaa acgtgaagaa taaaacgaag gatggaggga taatatggga attcatcaat
      961 atttccaaag tttatcagat ttagaaaaca tttatcgttg cccaggaaaa tttaaatatc
     1021 aagagcactc tgttgcagaa cattcatata aagttacatc cattgctcaa tttttcggcg
     1081 ctgtagagga agaagctggg aatgaagtga attggcgtgc actatacgaa aaagcgctaa
     1141 accacgatta ttcagagctt ttcatcgggg atattaaaac gcctgtgaaa tatgcaacga
     1201 cagaactccg cgaaatgctt tcagaagtag aagaaagcat gacaaaaaat tttattgaac
     1261 gagaaatccc agaaacgtat caaccaattt atcgtcattt gctaaaagaa ggtaaagaca
     1321 gtacgttgga agggaaaatc ctcgcaattt ctgataaagt agacctgtta tatgaatcct
     1381 ttggtgaaat tcaaaaagga aatccagaaa atatttttgt ggagatttat agtgaagcac
     1441 ttgcaaccat ttatcagtac cgagaaatgg ctagcgtgaa gtatttttta aaagaaattt
     1501 taccagatat gcttgctgaa aaaggtatcg aaaaaacaga attaccacag cttacaacgg
     1561 aaataacgac caaagcattg cgagacgcgt aaaaaagggg gaggaaagta agatggatca
     1621 aattatatct gcgcttattt tcccttgtct ccttgttatt ctttttgcga gaatcaccta
     1681 taatcgttat gtcgctttgc ttttgatggt aattttgatc gtcgcttctg ccaagttagg
     1741 ttatacaaat tctatgtggc ttattattat tgatgctttt tcgatgacca ttggttttgt
     1801 gcttgcaaca tatatgctgc gacgtttaaa gaagagtggc agtgattttt aacaaagcaa
     1861 atatataggt agaaaagcgt aaaagtgata aaataaagaa aagcgtaatc cacaggttgc
     1921 gttttttatt tttcaacaaa tgcgaaaata tgttcggttt ttgctaggct aattaaaata
     1981 tttatgataa aatagaaaca ttaacggatc tgaaaaatcc gctttttgct ttgctggact
     2041 tttcacaaat aaagcttttc agataccaga atcggaccga taaagaatag ggggaatccg
     2101 agttgaagga taaatttgag ttagtttcta agtatagccc acaaggagac caacctagag
     2161 cgatagaaca attagttgcg ggattaaaaa aaggcttgaa acaccaaact ttacttggtg
     2221 caaccggtac agggaaaact tttaccgtat ccaacgtgat tcaggaagta aataagccaa
     2281 cacttgtcat ggcccacaat aagacgttag caggacagct gtatagcgag tttaaagaat
     2341 ttttcccaaa taacgctgta gaatattttg tcagttacta tgattactat caaccagaag
     2401 cctatgttcc gcaaagcgac acgtatatcg aaaaagatgc aagtatcaat gatgaaattg
     2461 ataagcttcg tcactctgct accgctgcgc tttttgaacg tcgtgatgta attatcattg
     2521 cgagtgtatc gtgtatttat ggcttaggtt cgccgattga atatggagag atgctcgttt
     2581 cgcttcgtgt tggtatggaa attagccgtg atcagctact gcgtaaatta gtagacattc
     2641 aatatgatcg aaatgatata gattttcaac gtggacgctt ccgtgttcgc ggtgatgttg
     2701 tcgaaatttt cccggcatca agagacgagc actgcatgag gattgaattt ttcggtgatg
     2761 aaattgaacg tattagagag gtagatgcac ttactggcga aattattgga gaaagagaac
     2821 atgtttccat tttcccggca tctcactttg ttaccagacc tgatattatg aaaaaagcaa
     2881 ttgttaatat aaaagcggaa ctcgaagacc gccttcaagt tttacgtgca gataataaat
     2941 tactcgaagc tcagcgcctt gaacaacgga cgaattatga tttagaaatg atggaagaaa
     3001 tgggttattg ctctggtatt gagaactatt ctagacattt atcccttcgt ccagcgggag
     3061 ttacaccata cacgttactc gattacttcc cagacgattt ccaaatggta attgatgagt
     3121 cacacgttac gatgccacaa atccgtggta tgtttaacgg tgaccaagcc agaaaacaaa
     3181 tgctagttga tcatggtttt agactaccaa gtgctttaga taaccgtccg ctaagattag
     3241 aagaatttga aaaacatatc aatcaaatta tgttcatttc cgccacacca ggcccttatg
     3301 aactagaaaa aaatccggat gtcattgaac aaatcatccg accaaccggc ttgctagatc
     3361 caatcgtaga aattcgcccg attcaaggac aaatcgatga cttaatggat gagattaatg
     3421 atcgtgtcga gaaaaacgaa cgtgttttaa tcaccacttt aacgaaaaaa atgtcagagg
     3481 atttgaccaa ttatctcaaa gaagctggtg ttaaagtaca atatctccac tcggaagtga
     3541 agacgttaga gcgaatcgaa atcattcgcg acctccgact tggtgtgtat gatgttatcg
     3601 ttggaattaa tttacttcgc gaaggaatcg atttacctga agtatctctt gtcgctattt
     3661 tagatgcgga caaagaagga ttccttcgtt ccgagcgttc cttaattcaa acaatgggtc
     3721 gagccgctcg taatgaaaac ggtcgagtaa tcatgtatgc tgataaaatg accgattcga
     3781 tgcgcaattc tattggcgaa acagaacgcc gtcgtaaaat ccaaattgaa tataatgaaa
     3841 aacatggcat tacgccaaaa acaatcaaaa aagaaattcg tggtatcatc gcagcgactt
     3901 ctgccgcaga tgaaagagaa gcagtgaagc aacatgattt aagcaaaatg tctaagaaag
     3961 aacgcgatgt gttcattgaa ggtatggaac atgaaatgaa agaagcagcc aaagcacttg
     4021 atttcgaacg tgctgctgaa cttcgcgatg ctttactgga aataaaagcg gaaggatgaa
     4081 gcgaaattgg ataaagagaa aatagtaatt cagggtgcaa gagcccataa cttaaaaaac
     4141 attgatgtag agattcctag agacaaatta gtagttatga ctggactttc aggttcaggt
     4201 aaatcttcgc ttgcttttga tacgatttac gcagaaggac aaagacgtta tgtagagtct
     4261 ttgtccgcat atgcgcgcca atttttaggc caaatggata aaccagatgt agatttaatt
     4321 gaaggattaa gccctgccat ttcgattgat caaaaaacaa caagccgtaa tccacgttca
     4381 actgttggta ctgtcacaga aatccatgac tatttgcgct tactttatgc tcgtgttggg
     4441 catccagttt gtccaaatca cggtattgaa atcacttccc aaacaatcga acaaatggtg
     4501 gatcgcgttc tagaatatcc agaaaaaaca cgtattcaaa taatggctcc aatcgtttct
     4561 ggtaaaaaag gaacccataa gaaaactatt gaggaaataa aaaaagaagg ctatgttcga
     4621 attcgtgttg atggagaaat ttatgatatc aatgacgaaa ttgaaatcga gaagaataaa
     4681 aagcattcta ttgaaatcat tattgatcgc attgtgatta aagaaggtat caatactcgt
     4741 ttgtatgact ccattgaagc ggctcttcgt ttagctgatg gttatgcggt tgttgatata
     4801 atgggcgata aagaattatt atttagtgaa cactatgcgt gcccttattg tgggttttcc
     4861 gttggtgaat tagaaccaag aatgttctct ttcaatagcc catttggcgc ttgtccaaca
     4921 tgtgatggac ttggcactaa acttgaagtc gatgtcgaca cagttattcc agatagaagt
     4981 ctgtctctaa atgaaggtgc tattattcct tggcgcccaa ttagctcgca atactatcca
     5041 caaatgctag cttcggcttg taaagagttc ggaatagata tggatacacc tttggagaaa
     5101 ctaacgaaag aagaattaga tattatttta aatggatcaa aagacaaaga attctacttc
     5161 gaatacaaaa atgattttgg aatgacacgc gaaacgtgga ttccttttga agggatactt
     5221 ccaaatatcg aacgccgcta tcgtgagaca aattccgact ttacgcgtga tcaaatggcg
     5281 caatatatga ctgatttacc atgtccatct tgtaaaggtt atcgtctaaa agaagaaaca
     5341 ctttctgtta aagtaaacaa tcatcatatt ggccaaatca gtgagttttc tattaatgaa
     5401 gcactagatt tctttgatgg cttagaactc tctgaaaaag aaacacaaat tgcagcgccg
     5461 attttcaaag aagttcgtgc tagactaggc ttcttaaaaa atgttgggct cgactatcta
     5521 acaatgagcc gtgcagctgg gacgctatct ggtggtgagg cgcagcgaat tcgacttgct
     5581 acacaaatcg gttccagact tactggggta ctttatattc tagatgaacc ttccatcggt
     5641 cttcatcaac gagataatga ccgtttaatc agcacactcc aaagtatgcg tgacattgga
     5701 aacacgctta ttgtcgttga gcatgacgaa gatacgatga tggccgcaga ttatcttatt
     5761 gatattggtc caggtgcagg ggaacacggt ggacgaattg ttgcagccgg aactccagaa
     5821 gaagttgcca aaaataaaaa ttccatcact ggtgactatc tttcaggtaa aaaatttatt
     5881 ccagttcctg ctaaacgtag aaaaggtaac ggactagaat tagaaattat tggtgctaaa
     5941 gcaaataatc tcaaaaacgt aaatgcaaaa attccactag ctactttttc ttgtgtaact
     6001 ggagtttcag gttcaggtaa aagttcgcta gtgaatgaag tattacgaaa agcattagcg
     6061 agaaaactaa atagaaacca cgcaaaacca ggtgaacata aagaaataaa aggtatcgaa
     6121 aacctagaaa aaatcatcaa tatagatcaa tcaccaatcg gaagaacacc gagatcgaat
     6181 ccagctactt atacaggggc tttcgatgat attcgtgacc tttttgcaag cacaaatgaa
     6241 gccaaagttc gcggttataa aaaaggtcgc tttagtttta acgtaaaagg tggacgttgt
     6301 gaggcgtgta aaggcgacgg aatcatcaaa attgaaatgc atttcttgcc cgatgtatat
     6361 gtaccctgtg aagtttgtca tggaaaacga tacaatggcg aaacgttaga tattcgttac
     6421 aaaggcaaaa atattgctga agtattagag atgactgtag aagaaggcct agaatatttc
     6481 actaaccaac cgagaattgc acgtaaactg caaacgattg tggatgttgg acttggttat
     6541 attcgacttg ggcaacctgc tacgactctt tctggtggtg aagcacagcg tgttaagcta
     6601 gcttcggaac ttcacaagcg tagtaacgga aaatctttct atattcttga tgaaccaacc
     6661 actggtctcc acgcagatga tattggtcgt ttactcaaag tattacaaag acttgtagaa
     6721 gaaaatggcg acacagtact tgttattgag cataaccttg acgtaattaa acaagcggat
     6781 tacttgattg atttaggacc agaaggcggc gatggtggcg gtcaaattat tgcaaccggc
     6841 acacctgaaa aaatcgctcg ctcgaaaaaa tcatatacag gtaaatactt gaaaccaatt
     6901 ttagaacgcg ataaagaacg cacagaagaa cgaatcgcaa cagccaagaa aaaataatca
     6961 aaaccccgct tatgcaaaac ataagcgggg tttttaatag tccttaagaa caaaccaccc
     7021 aaagtccaaa caaataatca tcctctggtt gtatgacaga aattatattt tccttcataa
     7081 tagagtcata gataaaacag atatgtcact tgcatgtgaa agcaagccta aaatagttta
     7141 gcctaaatta taggaggaaa tgaaaatgga aaatgaacgt aaacgtattc tcgaattagt
     7201 aaaacaaggt attatatcca ctgaagaagc ccttactcta cttgaaaata tttccaaaaa
     7261 agaaggtaaa acagcagcaa aagaaaatat tcgtcggtct gcggctccga gagaagaaga
     7321 acaagtcgaa gaagaaacaa aagaagaacc atcatacgat tacagtaaag gttggaacaa
     7381 tcaaggaaac ccttatacac ctccaaaaag tcgtaaaaga cgcccagaac cgactccaga
     7441 aaatcatgaa agagacgaag aagagggcgg cgaaaattct tctaaagatc gtgaagactc
     7501 catgcgcaat atggttaatg atttatccca agcgggtgaa aaaatcggtt ctttcctaaa
     7561 tagtgcattt aaacaagtga aagatatgcc attcccgttc ttaacttcaa cgaaaatcga
     7621 acgtgatttc atttatcatg acacaacact ttctatttta gaatttgaaa ttgctaatgg
     7681 taatattgaa tttaaaccat ctgattcgaa cgatatcaaa gttcacgcga tgattaaact
     7741 attcaaagaa tatccagaag atgaagcact taaaatcttc tttgataaaa caactttacg
     7801 tgtagatgaa gaaactttac gttttgagtc taaatcaaaa caaatcgtta caaacttaac
     7861 tgtatacttg cctcgtcgtg agtacgatta tgtttccgtt aaaatgctta atggtaactt
     7921 ccatatggat gaattatccg gtcgtgattt atttgtgaaa acaaccaatg gtaatattag
     7981 tattggtact ttaaatgcta ctttggcaga aattgagtca attaatggta atgttcgtat
     8041 ccaaaatggt gaaattcgtg atgttgcact gaaaacattc aacggtaacg tagcagtaaa
     8101 aggtaattat tactccacca atttacaaac taaaaatggt aatgtaaatt atcaactaac
     8161 tggaaatgaa gctactttct taaaagcaaa aactggtgca ggtaatatcg atgtggttgt
     8221 acccgcagca attggtgtag atggccgttt ccacacaaac ttaggtaaat tacttttaga
     8281 tttaaaagat gccgaaattc ttgaatctaa aacagagtcc gtaagtaaat caattatttt
     8341 cactaaacta ccagatgcag ctgattcttc cttgaaaatc gaagcagaag caactactgg
     8401 ctccgtaaaa attcgcgatg taaaataatt aaacgaaatc tagcgccgga atgcgcgcta
     8461 gattttacat agatataaga aaggaagagc taacatggat aaaaaattaa gaagatcaag
     8521 agtggaccgg aaagtcggcg gtgtgtttgg tggactagct gagtttctag ggatagatgc
     8581 cacacttctg cgactaattt atattatcat caccattatt acgatgaaaa ccggtattgc
     8641 gattatcgct tatatagtag ccttgtttgt gattccttct tccgatacaa gtaatgaaga
     8701 agtacttgaa cggcatcgtc gccgcgtgga ggaaaaaaga aatcgtcacc taggacgtaa
     8761 tcaagctaga caggaagtgc gagaagcaat gagaaatagt catcatcata gaagaccaag
     8821 accagaaaat gctgaaccaa ttcatcacgg cgcaaggaag aaagaagctc gccctcgtcc
     8881 agtacgagaa ttcaattttg ataatgcgac tttccgttcc tttactatta gagtggcgac
     8941 cggggacgtt attatccgtt cttgggacaa agaacaaatg aaaatccgtg cagtactagc
     9001 tgtacatgaa aaagcgcgat ctattcgtca attaagcgaa gaaaaactat gggattactt
     9061 ctttagtcaa acgatgcttg atatttctcc ggacaatttc actttcgaat caaaaaatga
     9121 acttttaaaa accgatttag ttgttactat tccaaaacgt ttatacgagc aagtgaaaat
     9181 tcagctctta aatggtaatt tgaaatatga cgatacagct gctgaagatg ctattattaa
     9241 aacacgtcac ggtgatattc gctcatcagg agctagtggt aaatttttga gcacagaatc
     9301 agcggatgga gaaattttct tcaaacgtag cacagtagag aatgtagata tgtctactgc
     9361 taaaggagat attgcgcttc aaggtagctt tcttacaacg attgctaaag ctgcacaagg
     9421 ggacgttgag tatatactcg aaaatgatac ttcctcggcc tcagatttag aagcaccaaa
     9481 tggcgatatt cgaattcaaa ttccgccaac atggaatgtc gatggaacac ttggaactaa
     9541 aaaagaaaaa atctattttg acttaaaaaa tgcaaaaatt tgggatgacg cagaaagaac
     9601 ttttgtcttc actcaaaacg cagaagaaat aagcatggcg acacttcaag caaaagtagg
     9661 aaatggaatt attaaagttt ctgaactgga aacaaagaac gtttaataaa atgaaaggaa
     9721 gggaaaacaa tgaaaaagtt atataaatct tcatcacaaa aaatgattgc tggtgtctgt
     9781 ggtgggcttg cagaatactt tggcattgaa gtaaccatca ttcgtttact ttgggctgga
     9841 gcagttctat tctttggtac tgggatttta ctgtatattc tagctgcgat tattatgcca
     9901 acagcaacac ctgaatcaga atgggagtga actaaaacat gcgttggatt ataggcgtaa
     9961 ttattaactc ggtgcttttc gtagctttat caggattctt tacaagtttt catgtagatg
    10021 gattcacgac agcgctacta gcgagtttta tattagcaat tctaaatatg ctaattagac
    10081 ctattttact ccttttaaca ttaccaatta atattttcac acttggactt ttcacctttg
    10141 ttgtgaatgc aattatgctt gaaatgacta ccttctttat tggagattct ttccaaattg
    10201 atggttttgg aacagcgtta attctcgcag caattatggc attcgcaaac atgattatta
    10261 attccgtttt atggggtaac aaagaaaaat aaacattcca gctacatttt gaggctaaaa
    10321 atagtctttt aaatgtagct ggttttgcta tgtagagcca tttgagtaga aagaggtagc
    10381 ttgattcctt ctaaagtgct aaaatgagaa ggagctttct aaataatatt ttgtagcgaa
    10441 cagtaatgga cttttataat tcatttggag gtacttgcat gacaaaatcg gttacggtaa
    10501 aggatttaaa ggaacgactt aatttagagt taatttgttc ggaaacggga cttgaacggc
    10561 caatttcaac aagtgactta tctcggccgg ggctggaact tactgggttt ttctcttatt
    10621 atccagaaga tcgtgtgcaa ctttttggca tgactgaaat atcgttttct gaaggaatgg
    10681 aacctgaaga acgtctcaaa agatataaac aaatgtgtac gaagcggacg cctgcttttg
    10741 tgatttctag aaatttagaa gtgccgaaag aattagtagc agcagcgaaa gaagctgata
    10801 ttccggtatt acgttcacga cttaaaacga cacgtttatc tgtttatatt acgaattact
    10861 tagaaagcag acttgcgcca gttatttcga tgcatggtgt tctagtggat atatatggtt
    10921 taggtgtgtt gattacgggg agcagtggtg ttggtaaaag tgaaacagca ctggagcttg
    10981 taaaacgcgg gcatagactt gtagcagatg ataacgtaga aattcgtcaa gaggatgaaa
    11041 tgacgttaat tggttcttct ccagcaatta ttgaacattt actcgagatt cgcgggttgg
    11101 ggattattaa tgtaatgact ttatttggag caggagctgt tcgttctagt aaaaaaatta
    11161 ctatcgttgt gcaccttgaa aattgggatc ctgataagca ttatgatcgt gtcggattag
    11221 accaagaaaa gacaaaaatc tttgatatgg atattccgaa aattacggtg cctgttcgac
    11281 cgggacgaaa tttatctgtt attattgagg tagcggcaat gaatttccga ttaaagaata
    11341 tggggtacaa cgcggcagag caatttacac aagacctgaa taatttaata ggtcataaca
    11401 gcagtatgaa tgattaaata aatagtgaaa gcatctccgc agccaaactt tacaaaaatg
    11461 cttgtttggt tgcggagttg tctttttgaa agtaggggaa ttatgggtaa tggtgttcag
    11521 ccacttgatc cggtggcgat tcaaattggt agtatatctg tgaaatggta cggagttatt
    11581 attgcttcgg ctgttgtcat cgcgttactt cttgctttaa gtgaagcaaa caagcgcaaa
    11641 atggataaag aaattattgt ggatttgctg atatgggcaa ttccgatttc aattattagt
    11701 gctcgaattt actatgttat ttttgagtgg gatttctata
//
LOCUS       DASDXX010000076        11593 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.076, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000076 DASDXX010000000
VERSION     DASDXX010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11593
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.076"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..760)
                     /locus_tag="U0280_001569"
     CDS             complement(<1..760)
                     /locus_tag="U0280_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271520.1"
                     /translation="MNFFKRAWLSMKARKGRSVLQLIIFTVVCVLILSGFTIQSAADK
                     ASELAREQLGGTVTLTVDREKQMQTMRDEASSSDSSSTESKPQFQSSPIDVSDANDLA
                     KLNHVASYNYYSSTQALASGFDPIESSGDTSSSSDESSTTTETQGPGGGQGGPQMVDA
                     DLSISGLLDSATSTDFEAGTSELTSGVAITSADKDKNVAMVEENLAEENDWKVGDSFT
                     VTSSDGNTKVTLKIVGIYKTTDSGSDMAQNFSFLN"
     gene            927..1613
                     /locus_tag="U0280_001570"
     CDS             927..1613
                     /locus_tag="U0280_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2271521.1"
                     /translation="MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDE
                     YDIAIIDLMLPNMDGMTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPF
                     SPLTLMARIKAVTRRKNSATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEF
                     DLLYFLMQHPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRQKIATETKPFLHTVW
                     GVGYKFDETE"
     gene            1610..3049
                     /locus_tag="U0280_001571"
     CDS             1610..3049
                     /locus_tag="U0280_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM2271522.1"
                     /translation="MKRMKFKYAYQLFFTQFIILLIACIMIGVLVSHSLKDYFYQSQV
                     DDLTSYGQTISRDIRYSPQDATMQVLNTYQRILDVKKIHYTIKNANDETIYPTQMNQP
                     LPKDFSISSDDKKKLESGETVSKKIDNRFNKEMTIVYVPIMNGDKFVGSIVLNSPISG
                     TEQVIGTINRYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYKARLK
                     ENNFDEIGALAIDFNKMTQTLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTE
                     GLVNDIIPKSETDRCIALIDTEARRLTKLVNENLDYEKIRSNKIKLQKTRFNGKEFLE
                     LIKEQLDYVSSEKGNTITVSIDKDMAIYADYDRLTQVFINIVKNSVQFTENGQITLTG
                     TQDYKESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEY
                     HDGSITVTSEPNKGTSFTIRLPFFQDNEQ"
     gene            complement(3091..5487)
                     /locus_tag="U0280_001572"
     CDS             complement(3091..5487)
                     /locus_tag="U0280_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HEM2271523.1"
                     /translation="MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKE
                     TNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKFGQQFKADRFRKEMPQSRAGLI
                     NYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
                     NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDIKGIGFQRADEL
                     GRKLGLGGNHPERLRAGILFMLDSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQN
                     ILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQTEYQEQFPQSEFLL
                     ALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVS
                     LDPHAYKDGATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLI
                     DGRLLIVDEMSMVDIWLANQLFRALPAHMQVVLVGDQDQLPSVGPGQVLKDILQSEQI
                     PTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGDVVEQVV
                     KNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGDIKYRVH
                     DKVLQLINQPEKNVFNGDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLT
                     HAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLIYTGVTRSKQFLILCGEEEAFRMG
                     IERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG
                     "
     gene            complement(5515..6153)
                     /locus_tag="U0280_001573"
     CDS             complement(5515..6153)
                     /locus_tag="U0280_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2271524.1"
                     /translation="MQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAE
                     LFFKRALELDDTVPAAYYSLGNLYYELERYQEAADSFQNATKQGMENGDLFFMLGMSF
                     VQMEELTLAMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLERVLLVKPEDP
                     DALYNIGAAYLAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE"
     gene            complement(6194..6934)
                     /locus_tag="U0280_001574"
     CDS             complement(6194..6934)
                     /locus_tag="U0280_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2271525.1"
                     /translation="MKKIAIFGSAIVLFCLLIWGYFYFNSEPSTTAENAANSTKAVDV
                     LEENDILVFTPRKLDADMSVILYPGAFVDALSYAPLANKLASSGYKTYIVEMPLNLAV
                     FGKNRAADIIDEAPDEKFVIGGHSLGGVMSSRFAHDNESEIEGAFFLASYPDKKGSLK
                     NASFPALSVTATKDEVLNQDSYNKNKKYLPKDTTFVSIKGGNHAQFGSYGEQHGDGKA
                     TISGPEQTDQVANALITWLNTSVKNQER"
     gene            complement(7053..8168)
                     /gene="mnmA"
                     /locus_tag="U0280_001575"
     CDS             complement(7053..8168)
                     /gene="mnmA"
                     /locus_tag="U0280_001575"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEM2271526.1"
                     /translation="MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD
                     TDEFGVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDV
                     MCNKEIKFKAFLEHAESLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLS
                     QDQLKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQ
                     PGEMRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHH
                     ETLYSDSLIATDISFTTNAEKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPV
                     RAITPGQAVVFYDGDICLGGGTIDTVWKNGAKLDYVG"
     gene            complement(8187..9335)
                     /locus_tag="U0280_001576"
     CDS             complement(8187..9335)
                     /locus_tag="U0280_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2271527.1"
                     /translation="MENRIYLDHAATSPIHPEVIQTMLGAITNTYGNPSSIHYAGREA
                     RKALDEARHTIADSIHAIEKEIIFTSGGTEGDNLAIIGAALAQQESGKHIITSQIEHH
                     AVLKTCEYLETQGFEVTYLPVDEHGIVSIESLQEALRPDTILVSIMYGNNEIGTIQPI
                     AEIGAVLRNHQAIFHTDAVQAYGLLNINVTELGVDLLTTSSHKINGPRGVGFLYVKNG
                     TRLIYQMHGGEQERKRRAGTENLAGICGFSAASSIMMNERELKNEEYISFKKRMAEIW
                     RSADLDFEVNGLEANTLPHVFSVRFPGVSIEQLLMNLDMDGIAVSSGSACTAGTVDPS
                     HVLVALFGENHPAIQETVRISFGLGNHLEEVEMAATKISEVVTRLMKI"
     gene            complement(9450..9645)
                     /gene="ssrS"
                     /locus_tag="U0280_001577"
     ncRNA           complement(9450..9645)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="U0280_001577"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(9716..10999)
                     /locus_tag="U0280_001578"
     CDS             complement(9716..10999)
                     /locus_tag="U0280_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEM2271528.1"
                     /translation="MAIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMI
                     LYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVH
                     RLDKAKQDFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITM
                     DRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHI
                     TLDVAEECLQKKSLAHDKDGDAHYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSI
                     SRRMLVMAYEDIGLASPQAGAHTLAAIQTAEKVGFPEARIPLANAVIELCLSPKSNSA
                     IMAIDAALADIRQGKSGEVPDHLRDGHYSGAEKLGRAIDYKYPHNYDNAWVDQQYLPD
                     RLKNKLYYAPKFTSKFEQTIAGVYQKINENKAKKE"
     gene            11148..11570
                     /locus_tag="U0280_001579"
     CDS             11148..11570
                     /locus_tag="U0280_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2271529.1"
                     /translation="MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQ
                     LIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEAAQRE
                     LWTRMRNAVRDVLDQTTLADLLKHSTDAELSDGYMFYI"
BASE COUNT         3422 a         2459 c         2021 g         3691 t
ORIGIN      
        1 gatttaggaa agagaagttt tgtgccatat cacttccaga atctgttgtt ttataaatac
       61 ccacaatctt taatgttact ttggtattgc catcactgga tgtgacagta aaagaatcgc
      121 caactttcca atcattttct tctgctaaat tttcttctac cattgctaca tttttatctt
      181 tatcagcgga agtaattgcc acaccacttg ttaactcact agttcctgct tcaaaatcag
      241 tgctagttgc agaatcaagt aagccgctaa tgcttaaatc ggcatctacc atttgcggtc
      301 caccttggcc gcctcctggt ccttgtgttt cggttgtagt ggatgattca tcactcgaag
      361 atgatgtatc accggaagac tcgattggat caaatccgga tgctaaagct tgtgtactgg
      421 aataataatt gtaacttgct acatgattta actttgccaa atcattagca tcactaacgt
      481 ctatcggact actttgaaat tgcggcttgg attcagttga gctactatca ctgcttgaag
      541 cctcgtctcg cattgtctgc atttgttttt ctcgatcaac agttagcgtc actgtaccac
      601 caagctgttc tcgcgccaac tcactcgctt tatctgcagc cgattgaata gtaaaacctg
      661 ataaaataag tacacagacg actgtgaata taattagttg taaaacagat cttccttttc
      721 tcgctttcat gctgagccat gctctcttaa aaaaattcat gtgatttcct ccattcggtt
      781 tctactccac taagattact ggggagttat gaagaaagta tgaacaaact atgatgcata
      841 ttttaaactt tcgcgaaaaa aataatttgg cttgattatt gggtctaatt aggctagttt
      901 taatgtaaga ggagtgaata caaattatga aattacttat gatagaagat aatgtaagtg
      961 tttgtgaaat gatagaaatg ttctttatga aagaagaaat tgatgctacg tttgttcatg
     1021 acggcaagca gggttatgaa gcgtttttta aagatgaata tgatattgca attattgacc
     1081 taatgcttcc taatatggac ggtatgacca tttgccgtaa aattcgtgaa gtaagcgatg
     1141 taccaattat tattttaacg gctaaagaat cagaatccga tcaagtgctt ggccttgaaa
     1201 tgggtgcgga tgattatgta actaaaccat ttagcccact tactttaatg gcgcgaatta
     1261 aagctgttac acgccgcaaa aatagtgcca cttctacaga aaataatgaa gatatcctag
     1321 aaacaactta tttcaaaatt agtaaacgga cacgagaaat tttttatcaa ggtgagctac
     1381 ttgacgcact tacgccaaaa gaattcgatt tactctattt tttgatgcaa catccacgac
     1441 aagtgttttc aagagaacaa ttgctggaac aagtttgggg ttatcagttc tatggagatg
     1501 agcgcacagt ggacgttcac atcaaacgtt tacgccaaaa aatcgccacc gaaacaaagc
     1561 catttttgca caccgtctgg ggtgttggct acaaatttga tgaaacggaa tgaagcgaat
     1621 gaaatttaaa tatgcttacc aattattttt cacacaattt atcattttgc ttattgcttg
     1681 tatcatgatt ggggtgcttg tctctcactc cttaaaagat tatttttacc aaagccaagt
     1741 agatgactta acaagttatg ggcaaacgat ttctagggat attcgctatt cgccacaaga
     1801 tgcaacgatg caagttttga atacgtatca gcgaatttta gatgtgaaaa aaattcatta
     1861 tacaatcaaa aacgccaacg atgaaaccat ttatccaaca cagatgaatc agccgttacc
     1921 aaaggatttc tctatttctt cggatgataa gaaaaagctt gaaagtggcg aaacagttag
     1981 taagaaaata gataatcgct ttaataaaga aatgacaatt gtgtacgtcc caataatgaa
     2041 tggcgacaaa tttgtcggtt ctatcgtgct caattcacct attagcggta cggagcaagt
     2101 aattggtacg attaaccgct atatgttcta cactatttta ctttctataa cggtagcact
     2161 tattcttagc gcaatcttgt ccaaactaca agtaaatcga atcaacaaac tacgagcagc
     2221 gacaaaagac gttattcaag gcaattacaa agctcgattg aaggaaaata attttgatga
     2281 aattggtgca cttgccattg atttcaataa aatgacacaa acccttgaaa catctcaaga
     2341 agaaatagaa cgacaagaga agcggagacg ccagtttatt gctgatgttt ctcatgaaat
     2401 gcgtaccccg ctcacaacga ttagtggcct cacggaaggt ttagtaaatg atattattcc
     2461 aaaaagtgaa acagatcgtt gcatagcact cattgataca gaagctagac gtttaacgaa
     2521 actagtcaat gaaaatttag attatgaaaa aatccgcagt aacaaaatta aacttcaaaa
     2581 aacacgtttt aatggtaagg aattccttga gttaatcaaa gaacaacttg attatgtatc
     2641 aagcgaaaaa ggtaacacta ttactgtttc tatcgataaa gacatggcga tttacgcaga
     2701 ttacgatcgt ttaacacaag tatttatcaa tatcgtcaaa aatagtgtcc aatttactga
     2761 aaatggtcag attactctaa ctggcacaca agattataaa gaatctgttt taacgataac
     2821 agatactggg attggtatga atacagagga attagaacaa atttgggaaa ggttttataa
     2881 agcagatatg tctcgaacaa ataccgcttt tggcgaatct ggtattggct tatccattgt
     2941 gaagcagtta attgaatatc acgatggatc aattacagtg actagtgaac caaataaagg
     3001 tacttcattt actattcgcc ttcctttttt ccaagataac gaacaataaa aaaagaacca
     3061 ctttctattt ttttagagag tggttctttt ttatcctgcc ataaattgtt ctggagtaat
     3121 cccttccatt ccaatcatcg gatcaatttc cgtaatattt tcagctgtga gaattcgttt
     3181 atttgtcatt tgttctaata aaacatcttc gctcattaaa cgttcagaga gtgttgtatt
     3241 acgtttattt tcatcaattc gttctatccc cattcgaaaa gcttcttctt ccccgcaaag
     3301 aatgagaaat tgtttacttc gcgttactcc ggtgtatatt aaatcgcgcc gtaacatccg
     3361 gtagtaactg cggacaatcg gcataatcac aatcggaaat tcacttccct gcgctttatg
     3421 gatcgaacaa caataagcat gggtcaattg attaaattct tgcctatagt aagaaacctc
     3481 tgtttggtca aattgaacga caatcagatc ttgtttttcg gtattttctt tggcgtatat
     3541 aatagacaca atttcaccaa tatcaccgtt aaacacattt ttctctggtt gattaatcaa
     3601 ttgcagtact ttgtcatgca cgcgatactt tatgtcacca aattgaactt ctttacgacg
     3661 ccctgtatca tttggattga aaatttcttg tagtttttta tttaaaatat caatgcctgc
     3721 aggaccacga tacattggtg ctaaaacttg gatgtctttt gctcgaaatc ctttgttttt
     3781 tgcatttttt accacttgtt cgactacatc accaatttga tttaccgtgc aatgaaaaaa
     3841 ggagcgatcg gcgctatttt tggtgaaatc agctggcaac atgccttctt ttatataatg
     3901 cgccatttcg ataatggaag aaccatcctt ttggcggtaa atatctgaaa gagctacagt
     3961 tggaatttgt tcagattgca gaatatcttt gagtacttga cctggtccga ctgaaggcaa
     4021 ctgatcttgg tcgccaacaa gtaccacttg catgtgcgct ggtaaagcac ggaataattg
     4081 attagcaagc caaatatcta ccattgacat ctcatccact atcaacagtc gtccatcaat
     4141 cagtctttct gcatcatcat ccatttgttc ttgaccattc attccaagta aacggtgaat
     4201 ggtcatcgca ggaagccctg ttgactcaga catccgttta gcggcacggc cagttggagc
     4261 agcaagaaga acggggaaag tcgctccatc tttgtaagca tggggatcaa ggctcacacc
     4321 atttagttcc gcataaagct ccactatccc tttaatgact gttgttttcc ctgtcccggg
     4381 accaccagta agtacgagca tcggagacat taaagcttgt tctaaagcct gtcgctgcga
     4441 atctccgtag tgaacgccaa tccgttcttc taattctcct agagctagca gaaattcgga
     4501 ttgcggaaat tgttcttggt attctgtttg tttaagcatt cgcttcacgt gatatgcaaa
     4561 gccgctctct gaataataga gtgatggcat gtaaacacgt gtattttccg taataatctt
     4621 ttgttcctca gctaattttt ctacttgagc tactaaaata ttttggtcaa tacgaatgcc
     4681 ttcgctttct tccagtaaat aagttacttc tccgagcaga acctcttgct ccatatatac
     4741 atgaccttgt tgcatacaaa ccgaatctaa cataaataaa atcccagcac gaagccgttc
     4801 tggatgattc ccgccaagac cgagtttccg tccaagctca tcggcacgct gaaaaccaat
     4861 cccttttata tcctcaatca atttataagg attattctct aacacttcaa tcgcattttg
     4921 tttataggcc tggaaaattt tcatggataa ttgcggacca aagccatatt cgtttaatcc
     4981 gaccatcaca tgctccaacc cttgattttc tctaagggaa gcaagcaaac tttctgccgc
     5041 gccagatggc aacttaggta ctgtatttag caagctcgga tcggataaaa tttttgtgat
     5101 agcatcgtcg ccaatcgtat ccacaatatt ttcagcagtg actttaccaa tgcctttaaa
     5161 aagttcaccg gatagataat taattaagcc cgctcgtgat tgtggcattt ccttacgaaa
     5221 ccggtctgct ttaaactgtt gaccaaattt agcatgttcc tgcattttcc cgtagaaagt
     5281 gtatacttct tgctcgtgaa gcgctgggaa aaaaccggtt acgataatat ctttttcgtc
     5341 ccaatccgca ttggtttctt tgaccaatat tcgtacaaca gaaaagaggt tttcggcatt
     5401 gtaaaaaatg gtggacaaca tcgtgccctt catgaaaagt tcttctggtg tatcgttaaa
     5461 tagagcgagt gattcttgtt cagccatcct aagccgcctc ctttctaatt cgttttactc
     5521 tacttcgttc tctaaatctt gaattgcatt taaggcgttt tcagccaatt catgtgaagc
     5581 acctgtagca atcgctcgtt caaaatagtt tttagcaaga acgatatctc cttgccacgc
     5641 cagataagct gcaccaatat tgtaaagtgc atctggatct tcaggcttaa caagtaaaac
     5701 gcgttctaac atattaatcg catcttcata aaaaccactg cgagcaagca caatcccata
     5761 ttggaataac gcttcgccgt cttctgggtt taattcgaca cttctaagta aatatggcat
     5821 cgcaagtgtt agctcctcca tttgaacaaa actcattcct aacatgaaaa ataaatcacc
     5881 attttccatt ccttgttttg tggcattttg gaagctatct gccgcttctt gataacgctc
     5941 taattcataa tataaatttc ctaagctata gtaagcagct ggaactgtgt catctagctc
     6001 tagtgctctt ttgaaaaata attccgcacg ttcaaaatca tccattgaaa gtaaaacatt
     6061 tccaaaatta atataaccaa ctggatcact tggatgttct tcaattactt ctgtaaataa
     6121 cttgactgct tcttctaaat ttccttcttg catttgttta atacctaatt gatttttatc
     6181 catgttatcc ctcttatctt tcctgatttt ttacagatgt attaagccac gtaatgagcg
     6241 cattcgctac ttgatcagtt tgttctggtc cactaatcgt tgcttttccg tccccatgtt
     6301 gttcgccata tgaaccgaac tgcgcatgat ttccaccttt aatagagaca aaggtagtat
     6361 ctttaggtaa gtatttttta tttttattat aagaatcttg gtttaacact tcatccttag
     6421 tcgctgtgac agaaagcgct ggaaaagaag cattttttaa ggaacctttc ttatctgggt
     6481 aactagctaa gaaaaacgcg ccttctattt cgctttcgtt atcatgtgca aatctagaag
     6541 acatcacgcc accaagcgag tgtccaccaa tgacaaattt ttcatccgga gcctcatcaa
     6601 taatatcagc agctcgattt ttaccaaata cagctaaatt aaggggcatt tcaacgatgt
     6661 acgttttgta accgctcgaa gctagtttgt ttgcaagagg tgcataactt aacgcatcaa
     6721 caaaagcacc tggatataaa ataacactca tatcggcatc caatttacgc ggagtaaaaa
     6781 caaggatgtc attttcttca agcacatcca ctgctttagt tgaatttgca gcattttctg
     6841 cagttgtaga cggttctgag ttgaaataaa aatatcccca aataagaaga caaaataaaa
     6901 caatcgcact cccaaaaatc gctatctttt tcataaagga cctcttttcc ctgtttcgta
     6961 taatatttta ccataaaatc tgtttaaaaa aacgcattta aacaagaaaa aaaccggagt
     7021 ctcgtagaaa acaagattct ccggttccag ttttagccta cataatctaa cttcgcgccg
     7081 tttttccaaa ccgtatcgat tgttccaccg ccaaggcaaa tgtccccgtc gtaaaataca
     7141 accgcttgac ctggtgtgat tgctcgaact ggatcagcga aaactacttc tgctgtccca
     7201 tcttcgcgca agtgcacggt tactttcgta tcagtttgac gatagcggaa tttggcagta
     7261 cattcgattg ttttcggttt ttctgcattc gttgtgaaag aaatatctgt cgcaattaac
     7321 gaatctgaat atagtgtttc atgatggaaa ccttgttcca caaacaatac attttctttt
     7381 aagtctttac caacaacaaa ccaaggttca ccgtctccac caatacctaa accatggcgt
     7441 tgaccgatcg tgtaatacat caagccgtca tgtttcccta acacttcacc gttcagtgtt
     7501 ctcatttcac caggttgcgc cggaagatat tcacttaaaa attgcttaaa gtttctttcg
     7561 ccaatgaaac aaatcccagt gctatctttt ttgtttgcag tagcaagtcc ggcttttttc
     7621 gcaatttcgc gcacttctgt tttttccatg ccaccaaggg gaaacatcac ttttttcagt
     7681 tgatcttgtg aaagttggtt taaaaagtac gtttgatctt tattattatc gacacctcga
     7741 agtaattcaa tttcatcgcc gacttttttc acttgtgcgt agtgaccagt tgccacatag
     7801 tccgcaccaa gactttccgc atgttctaaa aatgccttaa atttaatttc tttattacac
     7861 ataacgtctg ggtttggcgt gcgaccgagc ttgtattcat ctaaaaaata cgtaaacact
     7921 ttatcccaat actctttttc aaaattgacc gcataataag gaataccgat ttgattggct
     7981 acgcgaatca catcatcata atcctccgtt gctgtacaaa cgccaaattc gtccgtatca
     8041 tcccaatttt tcataaagat gccaataaca tcataacctt gttcttttaa tatatgagca
     8101 gtgactgatg aatctactcc gcctgacatg ccgacaacta cacgaatgtc actattattt
     8161 gtactcaaag ttcgctcctc accttcttat attttcatta aacgcgttac tacttcacta
     8221 attttcgtag ccgccatttc cacttcttct aaatggtttc ctagtccaaa actaatccga
     8281 acggtctctt gaatcgctgg gtgattttca ccaaaaagag ctactaatac atgcgatgga
     8341 tctactgttc ccgccgtaca agccgaacca ctagaaactg caattccgtc catatctaaa
     8401 ttcattaata attgttcaat cgaaactcct ggaaaacgca cactaaatac atgtggcaag
     8461 gtattggctt ctaatccatt cacttcaaaa tcaagatctg ccgaacgcca aatttctgcc
     8521 attcgttttt tgaaggaaat atattcctca ttttttagct ctcgttcatt catcatgata
     8581 gaagaagcag cactaaaacc acagattccc gctagattct ccgttccagc gcgacgtttt
     8641 cgttcttgtt ctccgccgtg catttggtag ataagccgtg tgccattttt gacgtataaa
     8701 aaacctacgc cacgtggtcc atttatttta tgagaagaag tagttaataa atcaacccct
     8761 agctccgtta catttatatt taatagccca taagcttgta ctgcatctgt atgaaaaatt
     8821 gcttgatgat tgcgcaacac tgcaccaatc tccgcaatcg gttgaatcgt gcctatctca
     8881 ttatttccat acataataga aactagaatt gtatctggac gcaaggcctc ttgtaaactc
     8941 tctatagata ctattccatg ctcatctact ggcaaatagg taacttcaaa tccttgcgtt
     9001 tcaaggtatt cacatgtttt taagacagcg tgatgctcaa tttgagaagt aataatatgt
     9061 ttaccacttt cttgctgtgc taaagctgct ccaataatcg ccaagttatc gccttctgtt
     9121 ccaccacttg taaaaattat ttctttttct atagcatgga tactatctgc aattgtatga
     9181 cgagcttcat ccaaagcttt tcttgcctct cgtccagcgt aatggatact ggaaggattg
     9241 ccgtacgtat ttgtaattgc gccaagcatt gtttggataa cttctggatg aattggactt
     9301 gtcgcagcat ggtctaagta tattctattt tccatttttt atcgcgtcct tttttgtaga
     9361 cgaattcctg ttcgccgtta atcgtttctt attgtaacag caatactcct gtaaagtaaa
     9421 gaggaataac tcctatttac acgcaaaaaa gaaaccccaa tcgtaccgtt taggattccc
     9481 ttcctttgaa cccgctatca attaaagcag gtgggtgctc tgtctaacgg tttgcacttc
     9541 ctcgtgtgaa ggcatgtgcg ccgcgccgga actccaagct ccctaggtat aaaaaattgt
     9601 tcggttcaaa aatattagga actatatcga atacattagg gtttcttttc ttcatttaga
     9661 ataccataga aaagacgaaa tttcaatgtt agcgactttt catttggcac tttttttatt
     9721 ctttttttgc tttattttcg ttaatttttt gatacacacc agcaattgtc tgctcaaatt
     9781 tagaagtgaa tttcggcgca taatacaatt tgtttttaag acgatctggt aaatattgtt
     9841 gatccaccca agcgttatca taattatgtg gatatttata atcaatcgct cgtccaagtt
     9901 tttctgcacc agaataatgt ccatctcgca aatgatctgg cacttctcca ctttttcctt
     9961 ggcgaatatc tgctagtgcc gcatcaatcg ccataatagc agaattggat ttaggcgaaa
    10021 ggcaaagctc gatgacagca ttggcgagcg gaattctcgc ttcaggaaac ccgacttttt
    10081 ctgcggtttg aatggctgcg agtgtatgcg ccccggcctg tggactcgca agaccaatat
    10141 cctcatatgc cataacgagc attctccggc taatactgac taaatctccc gcctcaatta
    10201 aacgtcccat ataatggagt gccgcattca catcgctacc acgaaccgat ttttgaaaag
    10261 cacttaatac atcataatgg gcatcgccgt ctttgtcatg ggctaaactt ttcttttgta
    10321 aacactcctc tgccacatcg agcgtaatat gaatcacacc atcctcattt ggttcagaag
    10381 aaatgacagc taactctaag gcattcagcg cacttcgcac atcgccgtta ctcgccgttg
    10441 caaaatgttt tttcgcaacc tcatctattt ctacatcata attcccaagc ccgcgttctt
    10501 tatctgaaag cgcccggtcc attgttatca taatatcttc taccgttaga ggttttaact
    10561 caaaaatttg cgttcggctt cgaatagccg gattaatcgc gatataagga ttacttgtcg
    10621 ttgcacctat taagataatc gcgccacttt caagtaatgg taataaaaaa tcttgtttcg
    10681 ctttatccaa ccgatgtact tcatctaaaa gaagaataac cgtgccgctc attttcgcct
    10741 cggctgctac aacttccata tcttttttat tattggtaac tgcatttaat gtacggaatg
    10801 catattttgt acttccagca atcgcacttg caatcgaggt ttttccaatt ccgggcggcc
    10861 cgtataatat catagaagat aattgttttg ctttgaccat ccgataaata attttatctt
    10921 taccgactaa atgcgtttgt cccacgattt catctagtgc tttcgggcgc atccggtaag
    10981 ctaaaggttg aattgccata taaccgctcc ttcttatttg cttgtttact attataacat
    11041 aagaacatct gtgcgttcac ccacttgttt cctttgcctt ctttctgtaa ttccgatata
    11101 atagatgcgg tataagcggt tttgaaatta ctggaggtta aataaaaatg aagattacaa
    11161 caaaaggtcg ctatggccta acaataacac ttgaactcgc aaaaagaatt ggtgatggcc
    11221 caatttctct tcgtagtatc gcccaagata aaaatttatc ggaacattat ttagagcagt
    11281 taatcggtcc ccttcgtaat gcaggaattg ttaaaagtat ccgcggggct catggtggct
    11341 acgttttgaa cggcgatcct gaaaaaatta ctgcaggtga catcatccgc acactggaag
    11401 gcccgattgt acttgtcgaa agtatggaag atgaagaagc tgctcagcgt gaattatgga
    11461 cacgaatgcg caatgctgtc cgtgacgtgt tagatcaaac aacacttgct gacttattaa
    11521 aacattctac ggatgctgaa ctatcggatg gttacatgtt ttatatttaa tgaaaaaagc
    11581 ctattttcga ata
//
LOCUS       DASDXX010000077        11336 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.077, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000077 DASDXX010000000
VERSION     DASDXX010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11336
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.077"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..577)
                     /locus_tag="U0280_001580"
     CDS             complement(<1..577)
                     /locus_tag="U0280_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEM2271530.1"
                     /translation="MAENKRVISIENRIPELKKYRKKKLVRHLAILIGIFVILIAITL
                     YFLSPLSKLDKIAVSGNKQLTENEVRKESGLEIGEFVIGISNGKTEDTLKKNTLIKDA
                     TVSKEGINDVQINITEFKTIGYQQQDGKYYDVLESGIMLTDQPRQFPIGNDLLFQNFK
                     NGKTLEKMVAQINKLPKDVVSSISEVIYSPTK"
     gene            complement(600..1691)
                     /gene="murG"
                     /locus_tag="U0280_001581"
     CDS             complement(600..1691)
                     /gene="murG"
                     /locus_tag="U0280_001581"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEM2271531.1"
                     /translation="MKVAISGGGTGGHVYPALALIRELKKIHPEAEFLYIGTEKGLEA
                     GIVKREGIPFEAIEITGFKRSLSLENIKTVMRFLSGAKKSKQILRDFKPDVVIGTGGY
                     VCGPVVYAAAKLKIPTLIHEQNSVAGLTNKFLSRYTDKVAICFEEVSDSFASEKIVFT
                     GNPRASEVVGVDSEGALETYGLVSGKPTVLVFGGSRGARGVNEAVEAILPEWNNRDFQ
                     LLYVTGDVHYERIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELT
                     ALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAK
                     LNGMKLSAKQMGRPDAAAKLVEAVLSIMK"
     gene            complement(1688..3055)
                     /locus_tag="U0280_001582"
     CDS             complement(1688..3055)
                     /locus_tag="U0280_001582"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEM2271532.1"
                     /translation="MKKIEMYHHKKVLVLGLARSGVSAATIMHKLGAFVTVNDQKPFS
                     ENPEAQGLLEQGIKVICGSHPIELLDEGFELVIKNPGIPYNNPMIEKALKLKIPVITE
                     VELAYQISEAPIVGITGTNGKTTTTTIIHHMLNAHKENSSLLAGNIGFPASAVAENAT
                     SDQYISMELSSFQLMGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTAD
                     DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGARDNILL
                     PGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSKAT
                     NILATQSALKGFKNPVVLLAGGLDRGNSFDELLPFFKNVKALIVFGETADKIGRVGKI
                     AGIDVHYVDNVEAAVPVAYRESAPGDIILLSPACASWDQYRTFEVRGNAYMDAIGELI
                     EEVEK"
     gene            complement(3197..4171)
                     /locus_tag="U0280_001583"
     CDS             complement(3197..4171)
                     /locus_tag="U0280_001583"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEM2271533.1"
                     /translation="MSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKM
                     HEKKSGTPTMGAVVFITAMLISFLIFSFISGEVSAATWLLFIALALFGALGFLDDYIK
                     VVQKRNLGLTSKQKFLGQVAISILFYLVYHLNGFAETLNIPFTNIEVDLGWFFVIFIL
                     FWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFL
                     LFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFK
                     ATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLIGAIISVCVVIF"
     gene            complement(4218..5693)
                     /locus_tag="U0280_001584"
     CDS             complement(4218..5693)
                     /locus_tag="U0280_001584"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEM2271534.1"
                     /translation="MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDG
                     ELVDGHQFASRAVELGAVAIIAEKQLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALK
                     LVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQET
                     FRDMLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKS
                     LLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITS
                     HGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG
                     RFELVHAGQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMA
                     KIAVDYATNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEA
                     GDVILIAGKGHEDYQVIGDEVIDFDDRVEARIAIEKKLGLA"
     gene            complement(5868..8123)
                     /locus_tag="U0280_001585"
     CDS             complement(5868..8123)
                     /locus_tag="U0280_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM2271535.1"
                     /translation="MKRRIGNMRRGALVLFIFFTILFLLVSGRFLYLQITGEANGVPL
                     AAKASKQHLKSSVLEAKRGSILDRKGEVLAEDTASYTVAAVVSDKLSKTTKNPMRVVD
                     EEKTARILAKYIPMDESDILDKLNEKGKYQVEFGAAGKNISTETKAKIDKENLPGIEF
                     TRQSERFYPNGTFATQLIGFAQQEEEKNTTVLEGKMGIESRYNDILTGKNGKIDYSTD
                     RMGYILPNSKNKVTEAKDGKDITLTLDKKIQTFLEDTMTTVDAKYKPKNMMAVVADPK
                     TGEILAISQRPSFNPADRSTITGNSSSIWQDLPVEYAYEPGSVMKIISLASAIDTNTY
                     NANEYYQSGSYKVGDIAIHDHNNGNGWGSITYREGVERSSNVAFAKLLNKMGTDTFKT
                     YLDKFGFGKKTGIALPNETSGKILYNYPIEKVTTVFGQGTTVSMMQMIQAASAIASDG
                     TMKEPYVVSSVKDPNTGEETDTKTKIAGKPISAETAKKTRDELKNVISGEHGTGKLYA
                     IPGYDVAGKTGTSQIPDPKTGKYMTGADNYIFSFLGMAPADNPELVIYVTMQQPQLSG
                     SQTGGEAVSEVFNPVMKNSLQYMNIKPGDAEKLASEKVPVLAGKTIDEAKKIVKDKGL
                     EPIIVGNGKKIVQQLPQANAEIMQGQKVILMTDGDMTAPDMVTWSKDDALKVSEITGI
                     PFEFSGNGYVKSQSVSAGSVINSETKMKITLAPPEEISAFNQNHDQDTAEKNKKATDI
                     QENAGIGDLLN"
     gene            complement(8120..8482)
                     /gene="ftsL"
                     /locus_tag="U0280_001586"
     CDS             complement(8120..8482)
                     /gene="ftsL"
                     /locus_tag="U0280_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEM2271536.1"
                     /translation="MSNVAYKSNLEPNRVHREAEQPKKQILKRGQMTLGEKVIITIAL
                     AIVLVVAFRIISVQAQIYTVNQEIQTKETKILEQQKSNEDLKVEVKDLGRYERILKIA
                     KEKGLKLDGDNVKVVDGQ"
     gene            complement(8499..9437)
                     /gene="rsmH"
                     /locus_tag="U0280_001587"
     CDS             complement(8499..9437)
                     /gene="rsmH"
                     /locus_tag="U0280_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEM2271537.1"
                     /translation="MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNE
                     KGHLFAFDQDQTAINNAKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLG
                     VSSPQLDERERGFSYHQDAALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFS
                     KQIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELG
                     AVEDSLEKALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKP
                     DFKLATRKPIVPSEEELEQNNRARSAKLRVIEKIIK"
     gene            complement(9450..9881)
                     /gene="mraZ"
                     /locus_tag="U0280_001588"
     CDS             complement(9450..9881)
                     /gene="mraZ"
                     /locus_tag="U0280_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEM2271538.1"
                     /translation="MFMGEYQHNIDIKGRLIVPAKFRELLGDNFVITRGLDKCLFAYP
                     QEEWKKLEEKLQTLPLTKKDARSFTRFFFSGASECELDKQGRINIPSNLLQYADLEKE
                     TVIIGVSSRIEIWSKSEWDDVFNEAEESFADLAENMIGFDI"
     gene            complement(10084..11331)
                     /locus_tag="U0280_001589"
     CDS             complement(10084..11331)
                     /locus_tag="U0280_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2271539.1"
                     /translation="MFRELHPNIRARILIQFLSKVIGSMIFPFMAIYFSREINSSVAG
                     FLLMINVLAQFLAGMYGGHLADIIGRKKLMVTGELLKVFAFLGMVLCNSPMFHSPWIT
                     FVMLLIIGVAQGLINPAGEAMLIDVSTPENRSFMYSVSYWANNLSIMIGIMVGGWFFV
                     DYLFPLLVVLFIMSFVTAWLTISLISETLQQKEMPHKGSYGLMGMLKNYGQVLHDYRF
                     LLYTIGGIAIMSIEFQRSNYISVRLAEDVKALLVHLGPLGNISLNGVQIVSVLTAVNT
                     LFIVLFTVPIARFVTKRAQQPIMYVGFTLFALGFAVCAFANNLTVLLLATMVLSIGEL
                     LYVPTRQTVLAAIVDDERRGAYMAFNGIIFQIGKMIGSVSLVFAPFIGKYGMGAFTIT
                     LGVLSIVFSAVALKSGWEKVLVK"
BASE COUNT         3251 a         2433 c         1886 g         3766 t
ORIGIN      
        1 ttttagttgg actataaatc acttccgaga tagaactaac aacatctttt ggtaacttat
       61 taatttgtgc taccattttc tcaagtgttt taccgttttt aaagttttga aatagcaaat
      121 catttccaat tgggaattgt cttggttgat ccgttaacat gatgccactt tctagcacat
      181 catagtattt accatcttgt tgttgatagc ctatcgtttt aaattcggtg atattaattt
      241 gaacatcatt tatcccttct ttagaaacgg tagcatcttt aataagggta ttttttttga
      301 gggtatcctc agtttttcca ttacttatcc cgatgacaaa ctcaccaatt tcgagtccac
      361 tttcttttct tacttcattc tctgtaagtt gcttattgcc acttacagca attttatcta
      421 atttactgag tggggagagg aaatagaggg taatggcgat caaaatcaca aaaattccga
      481 ttaaaatggc taagtgtctt actaattttt ttttgcggta ttttttgagt tctggtatgc
      541 gattttcaat tgaaattact cgtttatttt cagccatttt attcgctcct ttctgcgatt
      601 tatttcataa tgctaaggac tgcttctact aatttcgctg ctgcatctgg gcgccccatt
      661 tgtttagcac ttagcttcat accatttaat ttcgcctcgt cattcaaaat cgaatcaact
      721 gtcgccatta aatcggtatt ttttaattct gcttctgtaa ttacgatagc tgcattattt
      781 ttttctaaag cgcgagcgtt attttcttgg tggtttgctg tcacgtatgg actaggtatc
      841 aaaatacttg gaacccctag cgctgtaagt tctgcaagtg tagtcgctcc tgctcttgaa
      901 acaacgagcg tcacagcgtt taaaattttt ggcatatcat aaataaatgg ttgaacacta
      961 atatgattac ccaaattcaa ctccgccaaa gaatctttta ttctttcata gtgtacatcg
     1021 cccgttacat aaagtagctg aaaatcccga ttattccatt ctggcaaaat agcttctacc
     1081 gcttcattca cgccgcgagc tcctctactg cctccaaaaa caagcacagt tggcttccct
     1141 gaaactagtc cgtaagtttc cagtgcacct tccgagtcca cacctacaac ttcagaagca
     1201 cgtggattac cagtgaaaac gattttttcc gatgcgaaag aatcacttac ttcttcaaaa
     1261 caaatggcta ctttatctgt gtagcggctt aaaaatttat tcgttaatcc agcaacacta
     1321 ttttgttcgt ggattaaagt aggaatttta agttttgcgg ctgcataaac gactggacca
     1381 caaacataac cacctgttcc gataacgaca tccggtttaa aatcgcgcaa aatttgttta
     1441 ctttttttcg cgccgctcag aaaacgcatt actgttttaa tattttctaa cgataatgaa
     1501 cgtttgaaac cagtaatttc aatagcttca aacggaatcc cttcacgttt aacgattcca
     1561 gcttctaggc ctttttctgt tccgatatat aaaaattccg cttcaggatg aatttttttt
     1621 aattctctga tgagagcaag cgctggataa acgtgtccac cagtaccgcc accacttatt
     1681 gctactttca tttttccacc tcttctatta gctcgccgat tgcgtccata taggcattcc
     1741 cgcgaacttc aaatgttcgg tattgatccc aactcgcaca tgctggtgaa agtaagataa
     1801 tatctcctgg tgctgattcg cggtacgcaa ctggaacagc tgcctcgaca ttatccacgt
     1861 aatgtacgtc aatgccagcg attttcccaa cgcggccaat tttatctgct gtttcgccaa
     1921 agacaattaa cgcttttaca tttttgaaaa atggtagtaa ttcgtcaaat gaattaccac
     1981 ggtccaaccc accagccagt aacacgactg gatttttaaa cccttttaat gcactttgag
     2041 ttgctagaat attcgttgct tttgaatcgt tatagaattt acgaccttgc cattctacaa
     2101 caaattgtgt ccggtgctct acacctttaa acgtttctaa tacgtgcatg atttcttcat
     2161 ttgtaacacc taacgttttt gctactgcta cggaagcaag cacattttct aaattatgct
     2221 ctcctggaag taaaatattg tcacgtgcgc caatcacttc atcgttgaac ataatattgc
     2281 cattttgcac gtagcttcct tgaccaaggc gttgtgtggt tgaaaacgga ataacttgtg
     2341 cttttgtttg ttttgttagg tttttaagct cttcttgatc ccaattaatt actaggaaat
     2401 catctgctgt ttgatttttt tggatatgcc attttgcttg aacgtattca ctacggtctg
     2461 tatggtaatc taaatgcgct tcataaatat tcgtgatgac ggaaatatgc ggtttaaatg
     2521 tttctacgcc cattaattgg aacgaagata gctccatcga aatgtattga tcactggtcg
     2581 cattttctgc aactgcggat gccggaaaac cgatgtttcc tgcgagtaaa gaactatttt
     2641 ctttgtgcgc atttaacata tggtggatga ttgtggttgt tgtcgtttta ccatttgttc
     2701 ctgtaatacc aacaattggt gcttcagata tttggtaagc taattcgact tccgtaatga
     2761 ctggaatttt gagttttaac gctttttcaa tcattgggtt gttgtacgga attccaggat
     2821 tttttatgac aagttcaaat ccttcatcta aaagttcaat tgggtgcgaa ccgcaaataa
     2881 ctttaatacc ttgctcaagt aaaccttgtg cttctggatt ctcgctaaaa ggtttttgat
     2941 cattaacagt tacaaatgct cccagtttgt gcataattgt tgccgcgcta acaccacttc
     3001 ttgcaagacc caagacaagt acttttttgt gatggtacat ttcaattttt ttcatttcct
     3061 ttggttcccc catttatatc aaaattggcg gtcgaattta tgattttcac aaaaacgacg
     3121 gaaagcgcca accagattct gtaaaaaaac agctaactag agacgctttt gccgtaaaaa
     3181 gattacggcg cattatttaa aaaatgacta cacagacaga aataattgct ccgattaacc
     3241 cgattcccca gaacgttaaa acaacacgcc attcggacca gccaccaagt tcaaagtgat
     3301 gatgaattgg tgtcatacgg aagattcgtt ttcctccagt tgccttaaaa taaaatactt
     3361 gcaatataac agatgctgtt tcaataacga aaataattcc gattaagagt aacagccatt
     3421 cttgatgtac taaaatagaa attgcggcga tacttccacc gagtgcaagc gaaccagtat
     3481 ctcccatgaa gattttcgct ggatttttat taaatagtag aaatccaagc ataccgccca
     3541 caatcgcaaa acagaaaatc gcgacatcca tttgttcttg gtaaaatgca atgacaccaa
     3601 aagcagaaaa agcaatgaca gaaaggccag agacaagacc atctaaacca tctgttaaat
     3661 taactgcatt agagaaacca actaaccaga acaaaataaa gataacaaag aaccaaccaa
     3721 gatccacttc tatatttgta aacggaatat taagcgtctc agcaaaacca tttaaatgat
     3781 ataccagata gaataaaatc gaaattgcca cttgacctaa aaacttctgc tttgaagtaa
     3841 ggcctagatt acgtttttga actactttga tatagtcatc taggaaacct aatgcgccaa
     3901 atagtgccag cgcgatgaat agcagccacg tagctgcact aacttcacca ctgatgaacg
     3961 aaaagatcaa gaaactaata agcattgcag taatgaaaac aactgccccc attgtcggtg
     4021 tccctgattt cttttcatgc attttcggac cttcatctct aatactttgg ccgaatttta
     4081 atttcaccaa gaatggtata aatagtggta cacctatcac cgtaatgata aaagcaactg
     4141 caaatgttga tactaacatg tataaagaca caataaattc tccccaatct gtttgtcaaa
     4201 gcacttcact tcatatttta tgcgagtcca agtttttttt caatagctat tcgggcttct
     4261 actcggtcat caaaatcaat aacctcgtca ccaatcactt gataatcttc atgacctttt
     4321 ccagcaatca gaataacatc ccctgcttct gcttcattta ctgcaaaacg aatcgcatct
     4381 cggcggtttt cgtgaaccac ataagaatca ctatatggaa caccttgaat catatcttca
     4441 ataatcgcac gcggattttc actccgcgga ttatctgatg taaaaatagg atttgttgca
     4501 taatctacag cgatttttgc catttgtgga cgttttcctt tatcacggtc cccgccacaa
     4561 ccaacaacga caaaaacgcg tttttctgca aactcagcaa ttgtttctaa tacatttagc
     4621 aagccgtctg gagtatgggc gtaatcaact ataacaggga actcttgccc tgcatgcaca
     4681 agttcaaaac ggcctttgac acccggtatg ctttccactg ttttaattgc tttttccata
     4741 gggatatgta gcgcaaagct agttgcaatc gcagccaata cgttataaac actaaagttt
     4801 ccaatcattt ttattttcaa tgtaaaatta ccaattggtg tccgtaaatc aaatgtagaa
     4861 ccatggctag taattctgat attacttgct ttgaagtcag cttgttgttt tatcccaaaa
     4921 gtgattacat gagcagctgt tgctttttgc atacgcacgc tttcctcgtc atccgcgttt
     4981 aacacagcaa tttttgggtt acttgtatgg tagctgttgc ctagttgcgc aaacaataag
     5041 ctttttgcat tggcgtattc ttccattgta tgatgataat ccaaatgatc ttgagacaaa
     5101 ttcataaata cagcaacatc gtaatctgaa ccatatacgc gaccttgaac gagtgcatgc
     5161 gaggatactt ccatcacagc tgtgctcact ccactaagta acatgtcccg gaatgtttct
     5221 tgtaaagtga ggctatctgg cgttgtattt tttgtttcta aaatttggtc gccaattttg
     5281 cgatacatcg tgccaatcaa acctgtttgc tcgccatttt cgcgcacgat ttgttccact
     5341 aagtggctca cggtcgtctt cccatttgtc ccagtaatcc caacgagctt taatgcttgg
     5401 gttggagatc cataaaagta atcggctaac atcgccatag cacgttttga atctcttaca
     5461 taaatgacag gaatagatac atctaattgt ttttccgcga taattgctac cgctcctagt
     5521 tctactgcac gtgatgcaaa ttgatgtcca tccaccaatt ctccatctat acaaataaac
     5581 aacgtccctg gttttacttt tctactatct tgggcgatat ggctaatttc aattgtttca
     5641 cttgcctcgc cagtaaaaac cgggatagct tgcattagtt catttaactt cattcttgcc
     5701 atctcctcaa acttattctt tctgttattt ttgctaaaac caaaaagaat ccttttctat
     5761 cttagcaaaa acaacaaact atatctacca cgacaaaaga cacagattgc atttaaagtt
     5821 agaagtatgc cactttgtaa agctgacata cttctatctt cctattatta attgagcaaa
     5881 tcaccgatac cggcattctc ttggatgtca gttgcttttt tatttttttc tgctgtatct
     5941 tgatcgtgat tttgattaaa tgcacttatt tcttctggtg gcgcgagggt tattttcatt
     6001 ttcgtttcac tattaattac gctacccgca gatacacttt ggctcttcac gtaaccattt
     6061 ccactaaact caaacggaat accagttatt tcagaaactt ttagcgcatc gtctttcgac
     6121 caagttacca tgtcaggggc agtcatgtca ccatctgtca ttaaaataac tttttgacct
     6181 tgcatgattt cggcgttcgc ttgcggaagt tgttggacaa tttttttgcc gttgccgact
     6241 ataattggtt ctaatccttt atctttcact atttttttag cttcatctat tgttttccct
     6301 gctaagactg gtactttttc ggaagctagt ttttctgcat cgcctggttt gatgttcata
     6361 tattgtagac tgtttttcat tacaggatta aaaacttctg agactgcttc tccgccagtc
     6421 tgactgccgg acaattgtgg ttgttgcatt gtcacataga ttactaactc cggattatcc
     6481 gctggtgcca ttcctaagaa agagaatata taattatctg ctccagtcat atacttacca
     6541 gttttcggat ctggaatttg tgatgtaccg gttttaccag ctacatcgta tcccggaatc
     6601 gcatataatt taccagtacc atgttcgccg ctaataacgt tttttaattc gtcacgcgtt
     6661 ttcttcgctg tttctgcact aattggtttt ccagcaattt ttgttttagt atcggtttct
     6721 tcgcctgtgt ttggatcttt gacacttgaa acaacatatg gctctttcat cgtgccatca
     6781 cttgcgatag ccgaagcagc ttgaatcatt tgcatcattg aaacggttgt tccttggccg
     6841 aaaacggttg ttactttctc aattggatag ttatataaaa ttttcccgct tgtttcatta
     6901 ggtaaagcaa tacctgtttt cttaccaaaa ccaaatttgt ctaaatatgt tttaaacgta
     6961 tcggtcccca ttttgtttaa aagtttggca aatgcaacgt tactagagcg ttctacccct
     7021 tcacggtacg taatagaccc ccaaccatta ccgttattat ggtcatgaat tgcgatatct
     7081 cctactttgt atgaacccga ttgataatat tcattggcat tatatgtgtt cgtatcaata
     7141 gcagatgcaa gagaaataat tttcattacc gaacctggct cataagcata ctcaacaggt
     7201 aaatcttgcc aaatactgga gctgtttcca gtaatagtag atcgatcagc agggttgaaa
     7261 gaaggacgtt gactaatagc caaaatttca cctgttttcg gatcagctac aactgccatc
     7321 atgtttttag gtttgtactt tgcatccaca gttgtcatcg tatcttctaa aaaggtttga
     7381 atttttttat ctagcgttag cgtaatatct ttgccgtctt ttgcttccgt tactttgttt
     7441 ttagagttag gcaaaatata gcccattctg tctgtactgt aatcaatttt gccattcttg
     7501 cctgtcaaaa tatcattgta acgggattca atacccattt taccttctaa aactgtagta
     7561 ttcttttctt cttcttgttg ggcgaaacca attaattgtg ttgcaaacgt tccattagga
     7621 tagaaacgtt ctgattgacg agtaaattca atacctggta aattttcttt gtcaattttt
     7681 gcttttgttt ctgtagaaat atttttaccg gcagcgccga attcgacttg gtattttcct
     7741 ttttcattga gtttatctag aatatcagat tcatccatag gaatatactt ggcaagaatt
     7801 cgagccgttt tttcttcgtc aacaacacgc attggatttt tcgttgtttt ggaaagttta
     7861 tcgctaacta ctgctgcaac cgtgtaagaa gccgtatcct ccgctagcac ttctccttta
     7921 cgatctaaaa tggagccacg ctttgcttcg agaacactgc ttttcaaatg ttgtttagat
     7981 gcttttgctg caagaggtac cccatttgct tctcccgtaa tttgcaaata aagaaaacgg
     8041 ccagaaacca agagaaagag aattgtgaaa aagataaaaa gcacaagagc tccccttctc
     8101 atgttaccta tacgccgttt cattgaccat ctaccacttt cacattatcg ccatcaagtt
     8161 ttagcccttt ttctttagcg attttcaaaa tacgttcata tctccctaaa tcttttactt
     8221 ctacttttaa gtcttcattt gatttttgtt gttcgagaat tttggtttct tttgtttgaa
     8281 tttcttggtt cactgtgtaa atttgcgctt gtacgctaat tatacgaaaa gcaacaacta
     8341 aaacaatcgc aagcgcaatc gtgatgatta ctttttctcc aagtgtcatt tgaccacgtt
     8401 ttaggatttg ttttttaggt tgttccgctt ctctatgtac tctatttggc tcgagatttg
     8461 atttataggc gacattgctc acattttttc aactcctgct atttgataat tttttcaatc
     8521 acgcgtaatt ttgctgaacg cgctcggtta ttttgttcca gttcttcttc acttggtacg
     8581 attggttttc ttgtcgcaag tttgaaatct ggtttatatt catctggaat gacaggaaga
     8641 cctggtggta aatctggtcc ttttgtcgct tcttggaata agtgttttgt aatgcggtct
     8701 tctaaagaat gaaacgtaat tacgctaatt ctgccgcctg gttttaataa agttaaggct
     8761 ttttcaagcg aatcttctac tgcaccgagt tcgtcgttaa cggcaattcg gatggcttga
     8821 aaagtgcgtt tccctggatg tccgcctttt cttcttgctg gagccgggat agctgttttg
     8881 ataatatcta ctagttcgcc tgttgtttca attggcttta cttcacgacg acgttcgatt
     8941 tcacgagcaa tttgtttcga aaatttttct tcgccatatt ggaaaaagat acggattaaa
     9001 tcttgataag accattcgtt aacaactatt tttgctgtca attcttgttc ttgatccatt
     9061 cgcatatcca gtgcagcgtc ttggtgataa ctaaaaccac gttctctctc gtctagttgt
     9121 ggggatgaaa cgcctaaatc atacaaaatc ccatcaaccg cttcgatacc acgctcattt
     9181 aatgcttctt tcatatcgcg aaaattggct ttaataaaag tcactttatc gctataatct
     9241 gctagtttaa tttttgcatt attaattgct gtttgatctt ggtcaaatgc aaataaatgc
     9301 cctttttcat taagcttatt tagtaaatac tcggagtgac ctgcgccgcc aagtgttgca
     9361 tcgacataga ttccgtctgg ttttacttca agcatatcga ctgtttcatg tagtaatacg
     9421 gtttcgtgtt taaacatgcg tttaccccct taaatatcaa agccaatcat attttcggct
     9481 aaatcagcaa aagattcttc tgcctcgtta aagacatcat cccactctga tttactccaa
     9541 atttcaatac gactagaaac cccgataata actgtttctt tttccaaatc cgcatactgt
     9601 agtaagttgg atggaatatt aatccggcct tgtttgtcta gttcacattc agacgcaccg
     9661 gaaaagaaga aacgtgtaaa ggaacgagca tctttcttag taagtggtaa ggtttggagc
     9721 ttttcttcaa gctttttcca ttcctcttgt ggataagcaa ataaacactt atcaagtcct
     9781 cgggttataa caaaattatc ccccaaaagc tcacggaatt tagctggcac aattaatctg
     9841 ccctttatat cgatgttgtg ttgatattct cccatgaaca ttagacttca cccactttca
     9901 tacataccac tttaccacat ctccccactt cgcaccacca aaaacctaaa aaagtgtaaa
     9961 aaaaaatcat cccagccaaa gcacagaatg atcaatccct tatttaaagc cattttcatc
    10021 taattcaatt cttaaaaaac aatgtggggc ttggtggagg gattccccac tttgaaccaa
    10081 catttatttt accaacactt tttcccaacc agattttagt gccactgctg agaacactat
    10141 acttaaaaca ccaagcgtaa tcgtaaaagc tcccatgcca tatttaccaa taaatggtgc
    10201 aaatactaaa cttacagaac caatcatttt accaatttga aaaataatac cattaaatgc
    10261 catgtaggcc ccacgtcttt catcatctac tattgccgct aagaccgttt gacgtgttgg
    10321 tacatagagt aattcaccaa ttgagagcac catcgtcgcc aaaagtaaaa ctgttagatt
    10381 atttgcgaaa gcacaaactg caaatccaag cgcaaacaaa gtaaacccta catacataat
    10441 aggttgctgc gcccttttag tcacaaatct cgcaattggt acggtaaaaa gtacaataaa
    10501 taaagtattc acagcggtta acacactcac tatttgtact ccattgagag aaatatttcc
    10561 aagtggcccc aaatgtacaa gtagcgcttt cacatcttct gctaaacgaa ccgaaatgta
    10621 gttgctccgt tgaaactcga tcgacatgat agcaattcca ccaatagtat atagaagaaa
    10681 acgataatca tgtaatactt gtccataatt tttaagcatt cccattagtc catatgaccc
    10741 tttgtgcggc atttcttttt gctgcaacgt ctcggaaatt aagcttatag taagccatgc
    10801 cgtaacaaat gacatgataa aaagaacaac taatagagga aacagataat ctacaaaaaa
    10861 ccaacccccc accataattc caatcatgat cgataaatta ttcgcccaat aactgaccga
    10921 atacataaat gaacggttct ctggggtact tacatcaatt aacattgctt ctccagctgg
    10981 attaatcaat ccctgagcta ccccaataat aagtaacatg acaaaagtta tccacggaga
    11041 atgaaacatg ggggaattgc atagtaccat cccgagaaac gcaaacactt taagcagttc
    11101 tccggtgacc attaattttt tacgtccaat aatatccgct agatgtccac cgtacatgcc
    11161 agcaagaaat tgtgctaata cattaatcat caagagaaag ccggcgacac tactattaat
    11221 ttcccttgaa aaataaattg ccataaaagg aaaaatcatc gaaccaatta ctttactcaa
    11281 aaactgaatt aatatccgcg cacgaatatt tgggtgcaac tctctaaaca tgacat
//
LOCUS       DASDXX010000078        11273 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.078, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000078 DASDXX010000000
VERSION     DASDXX010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11273
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.078"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            138..917
                     /locus_tag="U0280_001590"
     CDS             138..917
                     /locus_tag="U0280_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HEM2271540.1"
                     /translation="MSNLQVIANDMLPVLENEKGEKFVNARELHQSLQVGKKFTTWIT
                     DKLSNYGFSKDEDYFPILGESTFGRPRTEYLLTLDTAKELAMVQNNEMGRAIRKYFIE
                     VEKQARKLATEYPTFSYMIDDPVARAKKWIEEQQEKQEALKQIDEQKPKVIFADAVQT
                     SENTVLVKDLATILKQNGLDIGQNRLFEWLRGSGYLLNKGAYYNKPSQKAMNLGLFEQ
                     KTHIHTDRNGLMITTYTPRVTGKGQIYLLNKLLEEHNQVII"
     gene            1039..1563
                     /locus_tag="U0280_001591"
     CDS             1039..1563
                     /locus_tag="U0280_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271541.1"
                     /translation="MFQKSTSAPTAMQVLAETRTQKELAIDSYVTPALISNQLKGKRT
                     VSLEQAEQLIDSYNEPESTYLFAHEFSNGMIPPLLDGLDSHHAALTCRFELEVTEAVN
                     ALKSGLETMTFNLRKGDMLQREAAKQAISEITDVIATALTLNTSIAKAFNINLQQILE
                     SRDKFYQKNGLVKE"
     gene            1570..1755
                     /locus_tag="U0280_001592"
     CDS             1570..1755
                     /locus_tag="U0280_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2271542.1"
                     /translation="METMEKDILTAEEAAEMLGMKKRTIQSWARNAGLPGKKINGKTW
                     IFSKRELEAWVAQGGEK"
     gene            1771..1959
                     /locus_tag="U0280_001593"
     CDS             1771..1959
                     /locus_tag="U0280_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271543.1"
                     /translation="MTERVFRKTTNFGDSEIHTNSRTKMIANPAFQQKIPLNETGCDN
                     MTDYIEELKLKGYEEVTR"
     gene            2192..3151
                     /locus_tag="U0280_001594"
     CDS             2192..3151
                     /locus_tag="U0280_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HEM2271544.1"
                     /translation="MAIAKEKTMNILASVKDMDRTQWLLTRRLGIGGSDAGIIMGLNQ
                     YKTAFELWLDKTDQVPPGEMAGEAAYWGTQMEEVVAKEFEKRTGKKVRRSNMMYQHPE
                     HDFMLANVDRFVVGEDAILECKTASAYLAKEWEADEVPATYLVQIQHYLAVTGKSKAY
                     VAVLIGGNKFIWKEVERDDELINQIIAFELDFWETNVKGHVAPALDGSSAAEKYLKDR
                     FAKSEAKQVNLSKEYNEFLAERANLGRDITLLETRKKEIDNNIKNELKEAETGITDDF
                     TITWKPVTTSRVDTKRLKEEHLDIYKKLQKESSYRKFAVKENE"
     gene            3151..3966
                     /locus_tag="U0280_001595"
     CDS             3151..3966
                     /locus_tag="U0280_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HEM2271545.1"
                     /translation="MATNDELKNQLANKQNGGQVASAQSLDLKGLLEAPTMRKKFEKV
                     LDKKAPQFLTSLLNLYNGDDYLQKTDPMTVVTSAMVAATLDLPIDKNLGYAWIVPYKG
                     RAQFQLGYKGYIQLALRTGQYKSINVIEVREGELLKWNRLTEEIELDLDNNTSEKVVG
                     YCGYFQLINGFEKTVYWTRKEIEAHKQKFSKSDFGWKKDYDAMAKKTVLRNMLSKWGI
                     LSIDMQTAVTEDEAEPRERKDVTDDESIPDIIDAPITPSDTLEAGSVVQGSMI"
     gene            3996..4922
                     /locus_tag="U0280_001596"
     CDS             3996..4922
                     /locus_tag="U0280_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271546.1"
                     /translation="MDGYIALHRKIIDSWIWQDPEFYRLWSYCLIKASFKEREIFLGQ
                     QIVKLNPGQFVIGREKLEEAMNIGLKNKRTALTWWRRLQKLEKAQMLNIKSYNKFSIV
                     TIENWGLYQGSDIENEQQNEQQTNNKRTTDEQQTNTNNKDNKDNKEKNDNKDNNKRQN
                     KFDEVHLSLANLLFEMIKSNNPEEKVPDVEKWAHDIRIMIEQDKRDAEKVKNAIIWSQ
                     KNDFWCGVIKSPKSLRKNYDQMATQRNKPVANKPFNKYSKQTKPEILPDWFNKEQKQT
                     KQETSTTESSEDLEKKVAEIKAKLAARSEVQA"
     gene            4919..5086
                     /locus_tag="U0280_001597"
     CDS             4919..5086
                     /locus_tag="U0280_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271547.1"
                     /translation="MTEYALYKADELLIIGTVDKLAEFQKVKRETILFYATPTYQKRT
                     TDKGLRVIRVV"
     gene            5102..5383
                     /locus_tag="U0280_001598"
     CDS             5102..5383
                     /locus_tag="U0280_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271548.1"
                     /translation="MGKYYWHVSRFGGKPTEIRHYNHITKMYKFILRNPAMFKDKTLT
                     IYDDAKAVTNMTFNEIKYRASLNLCETVERKYVLSLTQRLKEEQKEAKK"
     gene            5380..6192
                     /locus_tag="U0280_001599"
     CDS             5380..6192
                     /locus_tag="U0280_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2271549.1"
                     /translation="MKRILNYPGSKWGLADLIIENMPEHKSYLEPFCGSCAVFMNKQK
                     ATLETINDLDGRLVNLFKTMRDNPEELQYLIMHTLYSREEYMLSHEISSDSLEDARRM
                     AVRLWFAVGGKTNANVGFRKNVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAI
                     KLIEQHNDKDTLIYCDPPYVATSLASSHYQHDFSLEQHKELLKVLKKHEGKVMLSGYE
                     SELYKQELSDWPALKTMTKVGITSEKKSDRQEIIWCNFEPPMQLNLFKEEQA"
     gene            6189..6821
                     /locus_tag="U0280_001600"
     CDS             6189..6821
                     /locus_tag="U0280_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM2271550.1"
                     /translation="MRFKEGDKVEFIWIGELKQGVVTEIEETKNAISYQIKYSGEMGM
                     TWLDERDLLSPAPVLKVPKLVGDFLENHSKEDGHTLHDLLCDLLTSRDSLDENVYDWI
                     MENNNENGELLARAWLDGYEVEKELLYYVKLPISKRNEATDELEVINMCLLLNIQSHE
                     TCISGNYRWVDKLKRTGWRTKLTEAQIKDMPEGDAYWQFAVPVRDLECEA"
     gene            6818..7339
                     /locus_tag="U0280_001601"
     CDS             6818..7339
                     /locus_tag="U0280_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271551.1"
                     /translation="MREIEFRGKRIDNGEWVYGNLMQFEDSATFIFADERKGASTLTY
                     AHFIINNMHAIDEKTLGSCIGREDEDEKTIFENDIVQVVLEHWPMGYYQEVEYIGVVK
                     YDTDICAYYLDLIKPPAVSGETIPDEIDGIKITREDSEDFDTRFYFDASVDSAAMTVI
                     GNIHENSEILEEQ"
     gene            7466..7858
                     /locus_tag="U0280_001602"
     CDS             7466..7858
                     /locus_tag="U0280_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271552.1"
                     /translation="MREIEYRAFVKETKKILPVTDLCFNETESVGVSGCGNPYCTMCV
                     DWYNFDDVLLMQYTEREDINNNKIFEKDIATCQFFDKKITGVIEFIEFMWAVIDHKNQ
                     RLYQLNEVSNIEVVGNVEENPELLEVSE"
     gene            7855..8040
                     /locus_tag="U0280_001603"
     CDS             7855..8040
                     /locus_tag="U0280_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271553.1"
                     /translation="MNDKKTDYKVYKITYKQRFMGEVIVDSYERTVKDDNELRSAINA
                     LYDDPHVFSVSSEEVAE"
     gene            8037..8327
                     /locus_tag="U0280_001604"
     CDS             8037..8327
                     /locus_tag="U0280_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271554.1"
                     /translation="MILYGVVTYDEATEWTTDLLTAKKWVENAKQVFYDGELDEDYYV
                     ALIKLDVEAFLYDKYDKETDLSDQLHDEAETLKEYRLRLDDDGTYMVKEVAE"
     gene            8327..8512
                     /locus_tag="U0280_001605"
     CDS             8327..8512
                     /locus_tag="U0280_001605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271555.1"
                     /translation="MCKFCNDDLKKRESVVDEMDPQDKIWLTSDKELVTNIVRNKEEY
                     SAYFNIKYCPVCGRSLE"
     gene            8513..8743
                     /locus_tag="U0280_001606"
     CDS             8513..8743
                     /locus_tag="U0280_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271556.1"
                     /translation="MENARERKRMYEKETGEIQNRIDAFDRALEQAPNLDTKMEYMQT
                     INSLRELLIIKFEGLAIASDEIINELEEGINE"
     gene            8736..8945
                     /locus_tag="U0280_001607"
     CDS             8736..8945
                     /locus_tag="U0280_001607"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271557.1"
                     /translation="MSELTELKQTLKDLLEDLEIMKNADDQLIKLSGSTTSKSLNYLW
                     EDIRYTITQIKEINYKIQIMEEELK"
     gene            8942..9463
                     /locus_tag="U0280_001608"
     CDS             8942..9463
                     /locus_tag="U0280_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271558.1"
                     /translation="MTKYYRIEKGTKAYEYLDKIYNQDTSAFLDEVTKLIGFDANGHI
                     GINREELIIKKSTLEELKPEWMHKFKRYQGEWMTPKVVLKELISSYAELRKKYNMDYE
                     FMYFCINNRLAGGVKVIYDFNSSGFTYLESNRDVENNDFDQVSEIKYLERKAELLAFE
                     IEQKKNMEQEVSK"
     gene            9460..9639
                     /locus_tag="U0280_001609"
     CDS             9460..9639
                     /locus_tag="U0280_001609"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271559.1"
                     /translation="MIPPFKIAEDEFIAISTAEELLEYIQHANELVSVVRESRSKAYK
                     ELASRGLQPLKEVQE"
     gene            9636..9896
                     /locus_tag="U0280_001610"
     CDS             9636..9896
                     /locus_tag="U0280_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271560.1"
                     /translation="MTNYHILLYAESGGVKILFNDYNKENITFDELKTSILKRLGNVD
                     SVNRINRDKVKVKQIITNSTSIKEMTEKINFETELRLDVREV"
     gene            9900..10073
                     /locus_tag="U0280_001611"
     CDS             9900..10073
                     /locus_tag="U0280_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271561.1"
                     /translation="MTKQIIINEANSLLHRKSKELSKSIIKTPKDLERFAVGLDKLSQ
                     DMWDYKNELEAIK"
     gene            10070..10453
                     /locus_tag="U0280_001612"
     CDS             10070..10453
                     /locus_tag="U0280_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271562.1"
                     /translation="MSIFAGDKIEVQDRSGVAELCVDGEQFHVLMNNGGLLTVEDEDG
                     FSSFNIPATQVKKVKVNSDVKLINELYGQSDAVSFSIYNADIDKAKLFVSNVNKPQFD
                     ERNNVKWYSASKGKITATAFLKGDD"
     gene            10455..10934
                     /locus_tag="U0280_001613"
     CDS             10455..10934
                     /locus_tag="U0280_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HEM2271563.1"
                     /translation="MSTLYSIQGKYQQLLNLAEQLDPELLKDTLESIDDELETKAENV
                     AFVIKELEGQSLILEKETKRLAERKNTINNNVKRLKQSLFDAMITANKQKIKTNLFTL
                     DIRKNPPSLIVEDESKLLNYLIEQPKKLDKTKLGDDLKKGIEVPGAKIIQTERLQIR"
     gene            10947..>11273
                     /locus_tag="U0280_001614"
     CDS             10947..>11273
                     /locus_tag="U0280_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2271564.1"
                     /translation="MEFIQSEKMKRSEYFNIMIYAKPGAGKTTTIKYLEGKTLMLDCD
                     GTSKVLSGLPNITIATLDPRNPVQDMADFYGYAKAHAEEYDNVVIDNLSHYQKLWLMF
                     NGRNTKS"
BASE COUNT         4369 a         1657 c         2417 g         2830 t
ORIGIN      
        1 cttataacgc ccattagagc aatgggctgg tcatcagaga tacctttgaa cattatatcc
       61 atgcgatttt tcacaaattc cacctccctt cacaaaaact atagcactgt gaaagggcga
      121 acagaaagga gaacaaaatg tcaaatttac aagtaattgc aaatgatatg ttgccagttt
      181 tagaaaatga aaaaggcgag aaatttgtaa atgcacggga actacatcaa agcttgcaag
      241 ttggaaaaaa attcactact tggattactg acaagcttag taattatgga ttttcaaagg
      301 atgaagacta tttcccaatt ttgggagaaa gtacattcgg tagacccaga acagaatact
      361 tattaacttt agacactgct aaagaattag caatggtaca aaacaatgaa atgggtcgag
      421 caattagaaa atactttatt gaagtagaaa aacaagcgag gaaattagca actgaatatc
      481 caacattttc atacatgata gacgacccag tcgctagggc taaaaaatgg attgaggagc
      541 aacaagagaa gcaagaagca ttaaagcaaa ttgatgaaca aaaaccgaaa gtgatttttg
      601 cagatgctgt acaaacgagc gagaatacag ttttagtaaa agacttagcg acaatcctta
      661 aacaaaatgg cttagatatt gggcaaaaca ggctttttga atggctaaga ggaagcggat
      721 atttgctaaa taaaggggct tattataata aaccatcgca aaaggcgatg aatttaggat
      781 tgtttgaaca aaaaacacat attcatacag atagaaacgg cttaatgata actacctata
      841 cacctcgagt tactggcaaa ggtcaaatat acctattaaa caaattatta gaagaacaca
      901 atcaagtcat aatttaagcg tcgcctacca caacgacgct tatgcagaca acttagtcac
      961 ggggagcgac taacaatagt atataacgat aagttgttaa ttagtggtta aaaaataaac
     1021 aaaaaggatt gagatattat gtttcaaaaa tcaacatcag cgccaaccgc gatgcaagtt
     1081 ttagcagaaa ctcgcacgca aaaagagcta gcgattgata gttatgtaac accagcacta
     1141 ataagcaacc agttaaaagg aaagcgaaca gtttcacttg aacaagcaga acagttaatt
     1201 gatagctaca acgaaccaga aagcacatat ttattcgcac atgaattttc aaacggaatg
     1261 ataccgcctc tactggacgg gctagacagt caccatgcgg ctttaacttg tcgctttgaa
     1321 ctagaagtaa cagaagcagt aaatgcgtta aaaagcggat tagaaacgat gacattcaat
     1381 ttaagaaaag gcgacatgct acaacgagaa gccgcaaaac aagcaatttc agaaataaca
     1441 gatgtaatcg caacagcatt aacgcttaac acaagtatag cgaaggcatt caacattaat
     1501 ttacaacaaa ttttagaaag tcgagataaa ttctatcaaa aaaatggttt ggtgaaggag
     1561 tgagaaacaa tggaaacaat ggaaaaggat attttgacag ctgaggaagc ggcggaaatg
     1621 ttaggaatga aaaagaggac tattcaatct tgggctagaa atgcgggatt acccggcaaa
     1681 aaaataaacg gcaagacatg gatttttagc aaaagagaac ttgaagcgtg ggtagcgcaa
     1741 ggtggagaaa aataaaggag ggctacaaca atgacagaaa gagttttcag aaagactaca
     1801 aacttcggtg atagcgaaat tcatacaaat agcagaacaa aaatgattgc taatccggca
     1861 tttcagcaga aaatcccgtt aaacgaaaca ggttgcgaca acatgacgga ctatatcgaa
     1921 gagttgaagt taaaaggcta tgaggaggtc acgcgctgat ggatgtattt atggtaatga
     1981 ttttcgtgtc gtttatgtct gtaatcgcag gtttttggct gagaggaagt gataaacgtg
     2041 gttgagaatc cgatggttgt tgatgatctt tgggacgatg gttttagaca ttaaaaaagc
     2101 acgcatagca gtgcgcgctt taaggatttg agatattacc ttaagaaaat tatacctcaa
     2161 attcacatat taatcaatgg aggtagcata tatggctatt gcaaaagaaa agacaatgaa
     2221 cattttagca agcgtgaaag acatggatag aacacaatgg ttgctgactc ggcgcttagg
     2281 tatcggcgga agcgatgcgg gaatcatcat gggtttaaat caatacaaaa cagctttcga
     2341 gttgtggtta gacaagaccg accaggttcc gcccggtgaa atggcaggag aagcagcata
     2401 ctggggaact caaatggaag aagttgtcgc aaaagaattc gaaaagcgaa ctggcaagaa
     2461 agtaagacgt agcaacatga tgtatcaaca tccagagcat gattttatgt tggcgaacgt
     2521 tgataggttt gtggttggtg aagacgctat tttggaatgt aaaacagcat cggcatacct
     2581 agcaaaagaa tgggaagctg acgaagtacc agcgacttac ctagtgcaaa tacaacacta
     2641 tttagcggtc acaggcaaaa gtaaagcgta tgtagcagtt ctaatcggag gaaataaatt
     2701 catttggaaa gaagtagaac gcgatgacga gttaatcaat caaataatcg cttttgagtt
     2761 agatttttgg gaaacgaacg taaaaggaca tgtggcacct gcgttggatg gttcaagcgc
     2821 cgcagaaaaa tatttaaaag atcgttttgc taagtcagaa gctaaacaag ttaatttatc
     2881 aaaagaatac aatgaatttt tggctgaaag agcaaattta ggacgcgata taacgctctt
     2941 agaaacacga aaaaaagaaa ttgataataa tatcaagaat gagttaaaag aagctgaaac
     3001 gggcatcaca gatgatttta cgattacttg gaagcctgtt acaacttcaa gagtagatac
     3061 aaaacgttta aaagaagaac atctagatat ttataaaaaa ttacagaaag aaagtagcta
     3121 tagaaaattt gcagtgaagg agaatgaata atggcaacta acgatgaatt aaaaaatcaa
     3181 ttagcaaata aacaaaatgg agggcaagta gcaagcgcac agtcattaga cttaaaaggt
     3241 ttgctagaag caccgacaat gcgcaagaaa ttcgaaaagg tactagataa aaaagcgcct
     3301 caatttttaa cttccctttt aaatctttat aatggcgacg actatttaca aaaaactgac
     3361 ccgatgacag ttgttacttc cgccatggtt gctgcaacac tagatttacc aatcgacaaa
     3421 aatttaggtt atgcgtggat tgttccttat aaaggcagag cacagtttca acttggttat
     3481 aaaggataca tccagttagc actacgcaca ggacaatata aaagcattaa tgttatcgaa
     3541 gtgcgcgaag gtgagctact gaaatggaac cgacttaccg aagaaatcga actagattta
     3601 gacaacaata caagtgaaaa agtcgttggt tactgtggct atttccagtt aattaatggc
     3661 tttgaaaaaa cggtctattg gactcgtaaa gaaatagaag cgcataaaca gaaatttagt
     3721 aaatcggatt ttggatggaa aaaagattac gatgcaatgg ctaaaaagac tgttcttaga
     3781 aacatgttaa gcaagtgggg gattttatcc atcgacatgc aaacagcggt tacagaggac
     3841 gaagcagagc ctagagaacg aaaagacgtt acagacgatg agtcgatacc cgatattata
     3901 gatgcgccta taacgccgtc tgacacgtta gaagctggct cggtagttca agggtcaatg
     3961 atctaagtga aaattgataa ggcaggggaa ttgcgatgga tggttatata gctttacaca
     4021 gaaaaattat tgatagctgg atatggcaag accctgagtt ttatcggctt tggtcatact
     4081 gccttatcaa agcgtcattt aaagaaagag aaatattttt aggtcaacaa atagtcaaat
     4141 taaatccggg tcaatttgta atcggaagag aaaaattaga agaggcaatg aacataggac
     4201 tcaaaaataa acgaacagca cttacgtggt ggcgacgatt acagaagcta gaaaaagccc
     4261 aaatgttgaa catcaaatcg tacaacaaat tttctattgt aactattgaa aactgggggt
     4321 tatatcaagg tagcgatata gaaaacgaac agcaaaatga acaacagacg aacaacaaac
     4381 gaacaacaga cgaacaacag acgaacacaa acaataaaga taataaagat aataaagaga
     4441 agaatgataa taaagataat aataaacgtc aaaacaagtt tgacgaggtt catttatctt
     4501 tagctaattt attatttgaa atgattaagt caaataaccc agaagaaaaa gttccagatg
     4561 ttgaaaaatg ggctcatgac atcagaatta tgattgaaca agataagcga gatgctgaaa
     4621 aagttaaaaa cgctattata tggtcacaga aaaatgattt ctggtgcggt gtcataaaat
     4681 ctccgaaatc tttaaggaaa aattatgatc agatggcgac gcaacgtaat aagccagttg
     4741 ctaacaagcc gttcaacaaa tacagcaaac aaacgaaacc agaaatattg ccagattggt
     4801 tcaacaaaga gcagaaacaa acaaaacaag aaacttcaac aacagaatca agcgaagact
     4861 tagaaaagaa agtcgctgaa attaaagcga aattagcggc tagaagcgag gtgcaggcgt
     4921 gacagaatac gcactttata aagcagacga actactaata atcggcacag tagacaaact
     4981 agcggagttt cagaaagtga agcgtgagac gattttgttt tatgctacgc ctacgtatca
     5041 aaagaggacg actgataagg ggttaagagt aattagagtg gtttagaaag gatgaaattt
     5101 cttgggaaaa tattactggc acgtgtcaag atttggtgga aagccgacag aaattcgaca
     5161 ctataaccac attacaaaaa tgtataaatt tattttgcga aatccggcaa tgttcaaaga
     5221 taaaacttta acgatttatg atgacgcaaa agcagttaca aacatgacgt ttaacgaaat
     5281 taagtataga gctagtttga atttatgtga aacggtagaa agaaagtatg tgttgtcact
     5341 tactcaaagg cttaaggagg aacagaagga ggctaaaaag tgaaacgaat acttaattat
     5401 cccggcagta aatggggttt ggcagattta ataattgaaa atatgccgga gcataaaagt
     5461 tatttagaac cattctgcgg atcatgtgcg gtctttatga acaagcaaaa agctacttta
     5521 gagacgataa acgatttaga cggtcgacta gttaatcttt ttaaaacaat gcgtgataat
     5581 ccagaagaac tgcagtattt aatcatgcac acgctgtatt ctcgtgaaga gtatatgctt
     5641 tcgcatgaaa tatcaagtga ttcattagaa gacgctagac gcatggctgt gaggctctgg
     5701 tttgccgtcg gaggcaagac taatgcaaat gttggattta gaaaaaacgt gtcttggaat
     5761 ggtccttaca atgcatatga gtggaatgac atgtataacc gaatcggaat agctgcagca
     5821 agactgaaag acgctcaaat cgaaaatgta gatgcaatta aactgattga acagcataac
     5881 gataaagata cactgatata ttgtgacccg ccatatgttg caacttcttt agcaagttca
     5941 cattatcagc atgactttag tttagagcaa cacaaagagt tactaaaagt gcttaaaaag
     6001 catgagggca aagtaatgtt aagcggctat gaatcagaac tatataaaca agagttatca
     6061 gactggccag ctcttaaaac aatgacaaaa gtaggcatta catcagaaaa gaaatcagat
     6121 aggcaagaaa ttatttggtg caattttgag ccgcctatgc aattaaatct ttttaaggag
     6181 gaacaagcat gagatttaaa gaaggcgata aagtagagtt tatttggata ggtgaattga
     6241 aacaaggtgt tgtaactgaa atagaagaaa ctaaaaatgc tatatcctat caaattaaat
     6301 atagtggaga aatgggcatg acttggcttg atgaaaggga cttactttct ccggctccag
     6361 ttttaaaagt tccgaaatta gtaggtgatt ttttggaaaa tcattctaaa gaagatggtc
     6421 atacacttca tgatttattg tgcgatttat taacttctag agattcgtta gatgaaaatg
     6481 tctacgactg gatcatggaa aacaataatg aaaatggtga attgcttgca cgcgcttggc
     6541 ttgacggcta cgaagtcgag aaagaactgc tttattatgt gaagttaccg atttcaaagc
     6601 ggaatgaagc tacagacgaa ttagaagtaa ttaacatgtg tcttttgtta aatatacaat
     6661 cacacgaaac atgtatttct ggaaattaca gatgggttga taagctaaaa agaacgggtt
     6721 ggagaaccaa attgacagaa gctcaaataa aagatatgcc cgaaggtgac gcttattggc
     6781 agtttgctgt tcctgttagg gatttggagt gtgaagcatg agagagattg agtttagagg
     6841 taaacgaata gataacggag aatgggttta cggtaattta atgcagtttg aggatagcgc
     6901 tactttcatt tttgcagatg aacgaaaagg cgctagcaca ttaacttatg cacattttat
     6961 tattaataac atgcacgcga tagacgaaaa aacacttgga agctgtatag gtcgcgaaga
     7021 tgaagacgaa aaaactattt ttgaaaatga cattgtgcaa gtagttttag aacactggcc
     7081 aatgggatac taccaagaag tagaatacat tggagtggtt aaatatgaca cggatatatg
     7141 tgcgtattat cttgatttga ttaagcctcc tgctgttagt ggcgaaacga taccggatga
     7201 aatcgacgga attaaaatta caagagaaga ctcggaagat ttcgatacaa gattctactt
     7261 cgatgctagc gttgattcag cagctatgac agtgataggc aacatacacg aaaattcgga
     7321 aatattggag gaacagtaaa tgacgttaag agaagcatta gagaagcaca caagatatat
     7381 cttgttttgt ggcatgtgcg agtgtggact tgtatggact atctgaattt aaattcaaaa
     7441 ataagccgaa ggaagggacg atagcatgag agagattgaa tatagagcgt ttgtaaaaga
     7501 aactaagaaa atacttccag tcacagattt gtgttttaac gaaacagagt ctgtaggcgt
     7561 aagtggttgc ggcaacccat attgtacaat gtgcgtcgac tggtacaact ttgacgatgt
     7621 cctgctgatg caatacacag aaagagaaga catcaacaac aataaaatat ttgaaaagga
     7681 cattgcaact tgtcagtttt tcgacaaaaa aatcactggt gttatcgagt ttatcgaatt
     7741 tatgtgggca gtaattgatc acaagaatca acgactatat cagttgaacg aagttagcaa
     7801 tattgaagtt gttggaaatg tggaagaaaa cccggaattg ttggaggtgt cggaatgaac
     7861 gataaaaaaa cagattataa agtatataaa ataacataca agcaacgttt catgggggaa
     7921 gttattgttg attcatatga aagaacggta aaagatgata acgaattacg gtctgcaatt
     7981 aacgctttat atgacgaccc acatgtgttt tcagttagta gtgaagaggt ggcggaatga
     8041 ttttatatgg ggtagtaaca tatgacgaag caacagagtg gacaacggat ttgctaacag
     8101 ccaaaaaatg ggtagaaaat gctaagcaag ttttctatga cggagaactt gatgaagatt
     8161 actatgttgc gttaataaag ttagacgtag aagcattctt atacgataaa tatgacaaag
     8221 aaacagattt gagtgatcag ttacacgatg aagctgaaac attgaaagag tatcgtttga
     8281 gattagatga tgacggaact tacatggtga aagaggtggc ggaataatgt gtaaattttg
     8341 caacgatgat ttgaaaaaac gagaaagcgt tgttgatgaa atggatccac aagataaaat
     8401 ttggctgaca agtgataaag aactcgttac taacatagtt agaaataaag aggagtactc
     8461 agcttatttt aatatcaagt actgcccagt ttgcggaagg agtttggaat aaatggagaa
     8521 tgcacgtgaa cgcaaaagaa tgtacgagaa agaaactggg gagattcaaa atcggataga
     8581 cgcatttgat agggcgttag aacaagcacc caacctagat actaaaatgg aatatatgca
     8641 aactataaac agtctaaggg aactcttaat aataaaattc gaaggactag caattgcgtc
     8701 agatgaaatc ataaatgaat tagaggaggg aataaatgag tgaattaact gaactaaaac
     8761 agacactcaa ggatttactc gaagacttgg aaataatgaa aaacgcagat gaccaattaa
     8821 taaaacttag cggaagtact acgtcgaaaa gtctaaacta tctatgggaa gacatcagat
     8881 atacaatcac acaaatcaaa gaaataaatt ataaaataca aattatggag gaggaactaa
     8941 aatgacaaaa tattatcgga ttgaaaaagg tacaaaagca tatgagtatt tagacaaaat
     9001 ttacaatcaa gacacaagcg cttttttaga cgaggtcaca aaacttattg gatttgatgc
     9061 gaacggtcac attggtatca atcgtgaaga attaataata aaaaaatcaa ctttggaaga
     9121 attaaaacca gaatggatgc acaaattcaa aaggtatcag ggtgaatgga tgacaccgaa
     9181 agttgtgcta aaggagttaa tcagttcata tgcagaactt cgaaaaaaat acaatatgga
     9241 ttatgagttc atgtattttt gcataaataa ccgcttggcg ggcggtgtca aagttatcta
     9301 cgattttaat tccagtgggt ttacatattt ggaatctaat agagatgtgg aaaacaatga
     9361 ttttgaccaa gtgtcagaaa ttaagtatct cgaaagaaaa gcagaactct tagcttttga
     9421 aattgaacaa aagaaaaaca tggagcagga ggtaagcaaa tgattccacc attcaaaatc
     9481 gcagaggacg aatttatagc tatttctaca gcagaagaac ttttagagta tatccaacat
     9541 gcaaacgagc ttgtaagtgt agtaagagaa tcaagaagca aagcgtacaa agaattagca
     9601 agtcgaggct tacagccatt gaaggaggtg caagagtgac aaactatcat attttacttt
     9661 acgcagaatc aggcggagtc aaaatattat tcaatgatta caacaaagaa aacattactt
     9721 ttgatgaact taaaacatcg atcctaaagc gattaggcaa tgtggactct gtgaatcgca
     9781 tcaatagaga taaagttaaa gtgaaacaaa tcattacaaa ttcaacttca ataaaggaaa
     9841 tgacagaaaa aatcaatttc gaaacagagt tacgtcttga tgtaagggag gtatgaaaaa
     9901 tgacaaaaca aatcatcatc aacgaagcta acagtttact tcacagaaaa agcaaagaac
     9961 taagtaaatc aatcatcaaa acacctaaag atctcgaacg tttcgcggtt ggactagata
    10021 aattatcaca agatatgtgg gattataaaa atgaattgga ggcgattaaa tgagtatttt
    10081 tgctggcgat aagatagagg tacaggatcg aagtggtgta gctgaattgt gtgttgatgg
    10141 tgagcagttt catgttctga tgaataatgg tggtctgcta actgttgaag atgaagacgg
    10201 attttcatcc tttaacatac cagcaaccca agtcaagaaa gtgaaagtga atagtgatgt
    10261 taaattaata aatgagctat atggccaatc agatgcagta agttttagta tatataatgc
    10321 agatatagat aaagctaagt tgtttgtatc taatgtaaat aagccacaat ttgacgaaag
    10381 aaacaatgtg aagtggtatt ctgcatcaaa aggcaaaata acagcaacag catttttgaa
    10441 aggagatgat taaaatgtca acattatact caattcaagg gaaatatcaa cagttgttaa
    10501 atctagcaga acagcttgat ccagaattac taaaagatac ccttgaaagt atcgatgatg
    10561 aactagaaac gaaagctgaa aacgtagcat ttgttattaa agagctagaa ggtcaatcgc
    10621 taatcttaga aaaagaaaca aagcgtttag ctgaacggaa aaatactatt aataataatg
    10681 tgaagcgact gaaacaatcg ttatttgatg caatgataac tgccaataag caaaaaatta
    10741 aaacaaactt attcacatta gatatccgga agaacccgcc aagcctcatt gtagaagacg
    10801 aaagcaaact gctgaattac ctgattgaac aaccaaaaaa attagataaa acaaaattag
    10861 gcgatgattt gaagaaaggt attgaggtac caggtgcgaa aattattcaa acagaaagat
    10921 tgcaaataag ataaggaggg atttcattgg aatttattca atcagaaaaa atgaaaaggt
    10981 cggagtattt taatattatg atttatgcaa aaccgggagc agggaaaaca acgacgatta
    11041 agtatttaga aggaaaaaca ttaatgttgg attgtgatgg tacgtcgaaa gtattaagtg
    11101 gattacctaa tatcacgatt gcgacattag atcctcgaaa tcccgtacaa gatatggctg
    11161 atttttatgg atatgcgaag gcacatgcag aggaatatga caatgtagta attgataatt
    11221 taagccatta tcaaaaatta tggttaatgt ttaatgggag aaatacaaaa tca
//
LOCUS       DASDXX010000079        11253 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.079, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000079 DASDXX010000000
VERSION     DASDXX010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11253
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.079"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..494
                     /locus_tag="U0280_001615"
     CDS             <1..494
                     /locus_tag="U0280_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2271565.1"
                     /translation="ANNISDISVLSECDNLRVFYAESNQLTSIEPLRNKTKLEYFDAN
                     FNQIKDVTPLSTIPTIRSIKIEENQISDFSSLAGHRLELFDATGQNIYLPDVALGDST
                     NIVMKDNLGVTLHDWVWYTPGTYQNDTLTWENAGDNSAYFLNNQYPTYPSVTVTVYQT
                     VTP"
     gene            complement(523..2409)
                     /locus_tag="U0280_001616"
     CDS             complement(523..2409)
                     /locus_tag="U0280_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2271566.1"
                     /translation="MKRIVKIFLHYLLGILGIILISCVPAIFSKVTSWSSSTYWEALK
                     SIFTAIFHPTKWEISYQGSAEVFHVSLADFITGPYFYSMKIIVASLLISAIIAYLLVI
                     ATFRGPKWLRRGLSGFLSILQAFPDFSFIFLIQMAVVYIYQQTGVFTLNFYSLNGEQI
                     YAAPIVCLSIIPTVLFYKMMMLLMENEWQADYIQLARGKGLTDRAILLRHATPNMMQS
                     LFYQSKTIVWFILSAYLVVEFLFGIEGVLYYLLAGFSPLNIFLVLALVFTPFYFFYAL
                     IDLWISRGKNTESANVTRIPLHWNSFQKTFTEKVNLKSKWRNFVVTTGQLLKRPSFSI
                     PLATLSILLIASLIYGLMGDKINSLKFISDATGRVTDMAPFKPNAQVWLGTDQAGNSI
                     LDQLLVGIKYTLLIAVIIATLRVVIGYILAVPLAFFSKPRTRNFVQSIADGMHYLPLS
                     LLVFIIMVNEFISYSGVFETSLFTRITFQILIMVVIVLPITTNRISSEISQVLKKEFV
                     LSALVFGGNARWILTKHINPQIWSKLILIWIEQLIQTLQMFVHLAIFGIFIGGAIMGA
                     DDGMLNPVIPELSGLIANAKFVFANHQFWIILPPLVVFMVLILCFQIMANSLLKREEE
                     SKKA"
     gene            complement(2493..3128)
                     /locus_tag="U0280_001617"
     CDS             complement(2493..3128)
                     /locus_tag="U0280_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2271567.1"
                     /translation="MAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVG
                     EVLKDTPIDAVYTSTSKRTQDTAAYILGDREIEIQPLEELKEMGFGTWEGIRVTEIDE
                     QHPEERAKILHSPETYKAEVNGGETYYELAERLLEGVEKIIAENLSGNILVVSHGMSL
                     TLLLYLLQGGTVEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK"
     gene            complement(3200..4159)
                     /locus_tag="U0280_001618"
     CDS             complement(3200..4159)
                     /locus_tag="U0280_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HEM2271568.1"
                     /translation="MKLTGIHHVSIFTANARANFDFYTKIMGLRLVKKSVNQDDPYTY
                     HLYYGDEIGSPGTALTFFEVPNMAKNHPSRNAISSLSLRVPSDEALHYWDKRLDEHRI
                     FHSKPIDQFGRKIIRLKDTDGLPVNLISDETSTQVTEVSPWEDSPVPAEYAIRGLGPV
                     RFSVFKKEKTDRLLTKILGFERIGAYEDDDKLVTVFKTGDVGLGGEVHVESRPDLEQG
                     NLGAGGIHHVAFRVPTDGDLIGWTEMIQDLGYKNSGYVDRFYFHSLYFRESNGILIEL
                     ATDEPGFQTDFTKEHGTYVDLPPHLENRREDILAHLKPLDTDK"
     gene            complement(4166..4582)
                     /locus_tag="U0280_001619"
     CDS             complement(4166..4582)
                     /locus_tag="U0280_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2271569.1"
                     /translation="MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAVGISTAQFDCI
                     AQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTGREKHITLTEKGQAC
                     YRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE"
     gene            complement(4729..5868)
                     /locus_tag="U0280_001620"
     CDS             complement(4729..5868)
                     /locus_tag="U0280_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgE/DapE family deacylase"
                     /protein_id="HEM2271570.1"
                     /translation="MERQRKIQILKDIVNIDSTNGHEEQVANYLQKLLAEHGIESEKV
                     QYDVDRASLVSEIGSSDEKVLAFSGHMDVVDAGDVSKWKFPPFEAAEHEGKIYGRGAT
                     DMKSGLAAMIIAMIELHEEKQKLNGKIRLLATVGEEVGELGAEQLTQKGYADDLDGLI
                     IGEPSGHRIVYAHKGSINYTVKSTGKNAHSSMPEFGVNAIDNLLLFYNEVEKFVKSID
                     ATNEILGDFIHNVTVIDGGNQVNSIPEKAQLKGNIRSIPEMDNETVKQVLVKIINKLN
                     KQENMNLELIFDYDKQPVFSDKNSDLVHIAKSVASDIVKEEIPLLGISGTTDAAEFTK
                     AKKEFPVIIFGPGNETPHQVNENVSIENYLEMVDVYKRIATEFLS"
     gene            complement(6002..7501)
                     /locus_tag="U0280_001621"
     CDS             complement(6002..7501)
                     /locus_tag="U0280_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2271571.1"
                     /translation="MKRNKVILRIVVTLAAVLAITFWVGMSSKEVEAAVIEQPTPINE
                     IFTDPVVADNVKTLLEKADVTDEVTQTDLDSITQLSAKSAGITTIEGMQYLTNLSELE
                     LTDNQITDVSPLANLTKITELGLSGNPLKDVSALAGLKSLTTMHLIYTDITDVTPLEG
                     LTNLQELNLDINQITDISPLAALTNLQTLSLGYTQVSDLTPIANLSKLTILNAENSKV
                     SDISPLASLSSLTEVYLRENQISDVSPLANIPNLSIIELTDQIITNQPVYYQNKIIVP
                     NVIKGLSGELIAPDTISDNGAYTSPDLTWDLNSYINSVSYTFNQSIAFKNTTVPFSGT
                     VTQPLTEAYTAVFDVDGEQTSLTVVVNELIEEPTVPTKEGYTFDGWYDAETNGNKWDF
                     AVDKMPASDITLYAKFTENEEPNASSSINVEPNDDNSINVEPDASNSITVKPTENNDG
                     TNNPNSSGDDKINIKLPITGDEWNVLPIFVGAVLIGMGLVLFRKKRQTK"
     gene            complement(7709..9415)
                     /locus_tag="U0280_001622"
     CDS             complement(7709..9415)
                     /locus_tag="U0280_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2271572.1"
                     /translation="MKRNKTALRILVTLAVVMAISFWVGTSSKEEVQAAVIAQPTPIN
                     EIFTDENLANAIKATLNKPSTTSDVSQTELDSIRDVTAESSNIASLEGAQYLNNIDTL
                     ILNNNKITDLNSLAGLSKLRILEANDNQLSDISALANVTSLHQLRLAGNQIKQLNGVS
                     NLINLETIELSNNQITDISPVSGLKNLIGLGIDYNDISDLSPIAGLAKLSHLTADNNQ
                     ISDLSPISSLGAMEIMRLDGNQISDVTPIANLANLNYVFLAENQISDISSLQPLFNSP
                     NFFGITLDDQKITSEPVLYQQELVVPNNIKDEMGALISPDTISDNGVYASPNISWNLA
                     NYTNQVSYTFNKQLAQGSFSGTVIQPLHNAYTATFDVDGVKTNEVVEETKLLQEPTAP
                     TKEGYTFTGWYDAKTGGNKWDFATDKMPAEDITLYAQFTINSYTATFDIDGKLTTQKV
                     TYQSLLEEPAAPTKDGYTFKGWYDAKTGGTKWDFATGKMPAGNITLYAQFTKNATPDS
                     NDPTTVTPTGNGNGTSNPSNSGGNTTLPTAGDENTMLPIFVGVFLLGTAMLILRKTIK
                     VK"
     gene            complement(9611..11218)
                     /gene="inlH"
                     /locus_tag="U0280_001623"
     CDS             complement(9611..11218)
                     /gene="inlH"
                     /locus_tag="U0280_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlH/InlC2 family class 1 internalin"
                     /protein_id="HEM2271573.1"
                     /translation="MVAAILGISLYVTTSQGAEVRAESIAQPTPINVIFPDPALANAV
                     KTATGKSNVTDTVTQADLDGIVTLSAFNTGVTTIEGMQYLNNLIGLELKDNQITDLTP
                     LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL
                     NQITDISPLAGLTNLQYLSIGNTQVSDLTPLANLSKLTNLRADDNKISDISPLASLPN
                     LIEVHLKDNQISDVSPLANLSNLFIVTLTNQTITNQPVYYQNNLVVPNVVKGPSGAPI
                     APATISDNGTYASPNLTWNLTSFINNVSYTFNQSVAFKNTTVPFSGTVTQPLTEAYTA
                     VFDVDGKQTSMTVGANELIKEPTAPTKEGYTFTGWYDAKTGGNKWDFSTDKMPAENIT
                     LYAQFTINSYTASFDNDGKITTQKVTYQSLLEEPAAPTKAGYTFKGWYDAKTGGTKWD
                     FATGKMPAGNITLYAQFTKNDSPNPNDPTPNTPTGNGDGTSNPSNSGGNTTLPTAGDE
                     NTMLPIFIGVFLLGTATLILRKSIKVK"
BASE COUNT         3104 a         2215 c         2073 g         3861 t
ORIGIN      
        1 cagcaaataa tatatcagac atcagtgtcc tttcagaatg cgataatctc cgagtttttt
       61 atgccgaaag caatcaactg acttctattg agccattaag aaataaaaca aaactagaat
      121 acttcgatgc taattttaat caaattaaag atgttacacc tctcagtacc attccaacaa
      181 ttaggtcaat aaaaattgaa gaaaatcaga ttagtgattt cagctcattg gcaggtcacc
      241 gcttagaatt gtttgatgct actggacaaa atatatacct tccagatgtt gcgctcggcg
      301 attccactaa tattgtaatg aaagataatc tcggagtaac attacatgat tgggtttggt
      361 acaccccagg aacttaccaa aatgatacac ttacttggga aaatgcaggc gataattccg
      421 cttacttttt aaataatcaa tatccaactt acccttctgt cacagtgact gtctatcaaa
      481 cagtcactcc ttaaataata atagcctagt tcttttatag aactaggctt ttttactttc
      541 ttcttctcgt ttcaaaagcg aatttgccat aatttggaaa caaagaatta aaaccataaa
      601 taccactaat ggaggtaaaa ttatccagaa ttggtggttg gcgaacacga atttagcgtt
      661 tgctattaaa ccagataatt cagggataac tgggtttagc atgccgtcat cggcgcccat
      721 gattgcccct ccgatgaaaa ttccaaagat agctaaatgg acgaacatct gtagcgtttg
      781 aatgagctgc tcaatccaaa tcaaaattaa tttggaccag atttgtggat tgatatgctt
      841 ggttaatatc cagcgagcat ttccgccaaa aacgagcgca ctcaagacga actctttttt
      901 taacacctgg gaaatttcac tgctgattcg gttggttgta attggtaaaa cgatgacaac
      961 catgattaaa atttggaagg ttatgcgtgt aaataggctt gtttcgaaaa cgccagaata
     1021 gctgatgaat tcgttgacca tgataataaa gacgagtaat gacagtggta gataatgcat
     1081 tccgtccgct atcgattgaa caaaattgcg ggttcgtggc ttgctgaaaa atgcgagcgg
     1141 tactgccaaa atgtaaccaa tcacgacacg tagcgttgcg atgatgacag ctataagtag
     1201 cgtatacttg atgccgacga gtaattggtc gagaatggag ttgccggctt ggtcggtgcc
     1261 tagccatact tgcgcatttg gtttgaaggg cgccatatcg gtcactcgtc cggtcgcatc
     1321 actgataaat ttaagcgagt tgattttgtc tcccataagc ccgtaaataa ggctcgcgat
     1381 tagtaagatg ctaagtgttg ccagcggaat gctgaaggat gggcgtttta ggagctgccc
     1441 ggtcgttact acaaagttgc gccatttgct tttaaggttt actttttccg taaaggtttt
     1501 ctggaaacta ttccagtgca gcggtattcg ggtcacgttt gcgctctcgg tatttttccc
     1561 acggctaatc cataggtcta ttagtgcgta aaagaagtaa aatggggtga acacgagtgc
     1621 taatactagg aaaatattta atgggctaaa tcctgctagt aaatagtaga gcacgccttc
     1681 gataccgaat aaaaattcta caacgaggta ggcgcttaaa ataaaccaaa cgatggtttt
     1741 ggattggtaa aataggcttt gcatcatatt gggtgtggca tggcgaagta gtatcgctct
     1801 atcggttaag cctttcccgc gagccagttg gatgtagtca gcttgccatt cattttccat
     1861 aaggagcatc atcattttgt aaaagagcac ggttggtatg atggataagc agacgattgg
     1921 tgctgcataa atttgctcgc cgtttaagct gtaaaaattc aaggtgaaca cgcctgtttg
     1981 ctgatatatg tagacgacgg ccatttgaat aaggaaaata aaggaaaaat ctggaaaagc
     2041 ttgaagtatc gataggaatc cgcttaagcc tcggcgcaac cattttggcc cgcgaaatgt
     2101 tgcaatcact agtaaataag caataatcgc tgaaattagc aagctcgcta cgataatttt
     2161 catggagtag aaatatggtc cggtaataaa atctgccaac gagacatgaa aaacttctgc
     2221 gcttccttgg taactaattt cccatttggt tgggtggaaa atcgctgtga aaattgactt
     2281 aagagcctcc cagtacgtgc ttgatgacca tgaagtcact ttgctaaata tcgcgggaac
     2341 acaactgatt aaaataattc ctaaaattcc taataaataa tgtagaaaaa ttttgacaat
     2401 tcttttcata tgtatgtttt ctcccttttt ctagctttct cttatgtata aatctaggac
     2461 acacctccaa tgagatatgt ccaagattct acttatttta agtctaaatg accgatttca
     2521 ttgatttttt taagagaaaa ttcgccgttt tggtattcta cgatgctaat acttgtgttc
     2581 aagattcttg gcgcttcttt gcggtgatct tcaaccgttc cgccttgcag caagtataat
     2641 aataacgtga gcgacatgcc gtgagaaacg acgagaatgt tgccgcttag attttctgca
     2701 atgatttttt cgacgccttc taacagtcgt tctgcaagtt cataataagt ctcgccgccg
     2761 ttcacttctg ctttgtaggt ttctgggcta tggagaattt ttgcgcgttc ttcagggtgt
     2821 tgttcgtcaa tttcagttac tctaatgcct tcccacgttc caaatcccat ttcttttagt
     2881 tcttccagag gttgaatttc gatttcgcgg tcgccaagaa tgtaagccgc ggtatcttgc
     2941 gtgcgtttac ttgtacttgt ataaaccgca tcaattggtg tatctttcaa cacttcgcca
     3001 actgcttttg ccccgtcaat accttctgca actagcggcg aatcgcccca tccctgcatt
     3061 tgtccagtca tattccattc cgtcttacca tgtcttacaa aataaattgt acgtaaacct
     3121 tctgccaaaa ttctgcctcc taattacaca ttcttctaaa attgtatcat gaataggcat
     3181 attttcaagg ttttcttatt tatttatctg tatcaagtgg ttttaaatga gccaaaatat
     3241 cttcgcggcg attttctaaa tgtggtggta aatcaacgta agttccatgt tctttcgtga
     3301 aatcggtttg gaaacctggt tcatcggttg caagttcgat taaaatgcca ttgctttcgc
     3361 ggaaataaag agagtggaaa taaaaacggt ccacatatcc tgaatttttg tagccaaggt
     3421 cttgaatcat ttctgtccag ccaatcaagt cgccatctgt cggtacacga aacgccacgt
     3481 gatgaatccc gccagcacct aaatttcctt gttctaaatc aggtcgcgac tccacatgca
     3541 cttctccgcc aagcccaacg tcgccagttt tgaatactgt aactaattta tcgtcatctt
     3601 cataggcacc gatccgctcg aagcctaata tttttgtcaa aagacgatct gttttttctt
     3661 ttttgaaaac agagaagcgc actgggccaa gtccgcgaat ggcatattct gctggaaccg
     3721 ggctatcttc ccaagggctc acctcggtta cttgtgtgct tgtttcatcg gaaatcaaat
     3781 tgaccggtaa gccatctgtg tcttttaaac gaataatttt gcgcccgaat tggtcgattg
     3841 gtttactgtg aaaaatgcga tgctcatcga gtcttttatc ccagtagtgc aaggcttcat
     3901 cgcttggaac acgtaagctg aggctagaaa tcgcattgcg tgatgggtgg tttttggcca
     3961 tatttggaac ttcaaagaaa gttagcgctg tccccggcga accgatttcg tctccgtaat
     4021 ataagtggta cgtataaggg tcatcttggt taaccgattt tttcactagt cgtagtccca
     4081 ttatttttgt ataaaagtca aagttagctc gtgcgttcgc tgtaaaaata gatacgtgat
     4141 gaattcccgt taatttcata aataatcact ctcctaattt ttttaatagc ttaagtagtt
     4201 ctttttgttc gtctcttgtt aatttatcaa attgagcttg ctgaaaagct tcttgttttg
     4261 gcacgttttc gcggtaacac gcttggcctt tttctgtgag ggtaatatgt ttttcgcgcc
     4321 ctgtctttgt tcgcgtgata taacctaatt gttctaattt cgcgaggagt tgggtaacat
     4381 ttcccttcgt tacaactaat ttttcggcaa gttgttgctg tgtaatctct ttgtctaagc
     4441 caatttgggc aatgcaatca aactgcgctg tcgaaattcc taccgctcgc aaattctgat
     4501 tggtcagctt catattccga ttgtaaaatc gactaaatcg aaaccaaagc aaaaccccta
     4561 gcctttcttc tttttttacc atgctcgtcc cctcctcttg atattattag tttagtacta
     4621 aactgtatta aaagcaagaa aaaagcctag cacctgttta caaacaaata ctagactttt
     4681 atttaattgc gtattttata gcggaaaata agtaaagtta aagttccatc acgataaaaa
     4741 ctcggtggca attcgtttgt aaacatctac catctccaaa taattctcta tagaaacatt
     4801 ttcgtttact tggtgagggg tttcgtttcc tggtccaaaa ataatcactg ggaactcttt
     4861 cttagctttg gtaaattctg ctgcatcggt tgttccggaa ataccgagta atgggatttc
     4921 ttctttgaca atgtcgcttg ctacgctctt agcaatgtgg actaaatccg aatttttatc
     4981 actaaatact ggttgtttgt cataatcaaa tattaattct agattcatat tttcctgttt
     5041 gtttaactta ttgataatct tcactagcac ttgtttcact gtttcattat ccatttctgg
     5101 aatcgagcga atattccctt ttagttgcgc tttttcaggg atactattga cttgatttcc
     5161 accatcaatt acggtgacat tatgaataaa atcgcctaat atttcgttag tagcatcaat
     5221 tgatttcacg aatttttcta cttcattata aaatagcaac aagttgtcaa tcgcattaac
     5281 accgaattcc ggcatcgaac tatgcgcatt tttaccagtg gatttaacgg tataattaat
     5341 ggaaccttta tgcgcataaa caatccggtg tccactcggt tcgccgataa tcaagccatc
     5401 taaatcatct gcgtaacctt tttgcgttag ttgttcggct ccaagttcac cgacttcttc
     5461 accaaccgtt gctaataatc taattttgcc atttagtttt tgtttttctt catgaagctc
     5521 aatcattgca ataatcatcg ccgctagacc tgacttcata tccgtcgcgc cacgtccgta
     5581 tattttccct tcatgctctg ctgcttcaaa aggtgggaac ttccacttcg agacatcacc
     5641 cgcatcaacg acatccatat gccctgaaaa cgccaaaact ttctcgtcac tggaaccaat
     5701 ttcgctaact aggctggctc tgtctacgtc gtattgtacc ttttcggatt caataccgtg
     5761 ttcagctaac aacttttgca aatagttcgc aacttgttct tcatgcccat tagtcgaatc
     5821 aatattcaca atgtctttta agatttgaat ttttctttgt cgttccatgt ttacgccctc
     5881 tttctttgaa ttccactcta tgttttcccg ttccataaaa agacaaactc atcctcctaa
     5941 tctctaatca aaaaatggct tagctactgt atgatttaca gaagccaagc cagtaatcaa
     6001 attattttgt ttgacgtttt ttgcggaata aaactaagcc cattccgata agaactgctc
     6061 ctacaaaaat gggaagcaca ttccattcgt ccccagtaat tggtaacttg atgttaattt
     6121 tatcatcacc tgaactgttc ggattatttg ttccatcgtt attttctgtt ggttttacag
     6181 tgatggaatt gctagcgtcg ggttctacat tgatggaatt atcatcgttt ggttccacat
     6241 taattgaact actagcattt ggttcttcgt tctcagtgaa cttagcatat aaagttatat
     6301 cactagcagg cattttatct accgcaaagt cccatttatt cccattcgtt tctgcgtcat
     6361 accagccatc gaatgtatat ccttccttgg ttggaactgt tggttcttca attaattcat
     6421 tcacaactac tgtcaaactt gtttgctctc cgtccacatc aaaaacggca gtgtaagcct
     6481 ctgttaatgg ttgggtgact gttccactga aaggaaccgt tgtatttttg aaagcaattg
     6541 attgattaaa tgtgtaacta acactattaa tgtagctgtt taaatcccac gttaaatcag
     6601 gactagtata tgctccattg tcgctaatag tatcaggtgc aataagctca ccggaaaggc
     6661 cttttatcac atttggaaca atgattttat tttgataata tacgggttga ttggtaatta
     6721 tttgatccgt caactcaata atagataagt tgggaatatt cgcaagggga ctcacatcgc
     6781 taatttgatt ctctctcaag taaacttctg taagactaga taaactagca agtggcgaga
     6841 tatcgcttac tttactattt tcagcgttta atatggttag tttagataaa ttagcaattg
     6901 gggttaaatc actaacttgg gtatatccga gtgataatgt ttgcaagtta gttaaagctg
     6961 ctagtggact tatatccgtt atttgattga tatccaaatt taattcctgc aaattggtaa
     7021 gaccttcaag gggagtcaca tcggtaatat ctgtataaat aagatgcatc gttgttagac
     7081 tttttaatcc cgcaagcgca ctcacatctt ttaatggatt tccggataat ccaagctctg
     7141 ttattttcgt taaatttgcg agcggactta catcggttat ttggttatct gttagttcta
     7201 gttctgataa attagttaag tactgcattc cttctatcgt tgttattccc gcagatttag
     7261 ctgataattg ggttatacta tctaaatcag tttgcgtaac ttcatctgtt acatccgctt
     7321 tttcgagaag tgttttcaca ttatcagcaa ccactggatc agtaaaaatt tcattaatag
     7381 gggttggttg ttcaattacc gctgcttcta cttcttttga gctcatccca acccaaaaag
     7441 taattgccaa tactgcagct aaagtcacta cgattcttaa tattactttg tttcttttca
     7501 ttaaactatc tcctttgtat gatcgttctg cttttagaaa tttgtgtgtt ctcgtagttg
     7561 agttactata ttatagcgta gtaggttttc gttcaatcac taaaattaga cttgttatcg
     7621 ttttaattgt gacgtttaga tgaatttctt tgctaataaa aaaacagccg aaatctatag
     7681 aaaaactata gatctcagct gttttttgtt attttacttt gattgttttg cggagaataa
     7741 gcattgctgt tcctaacaag aaaactccta caaaaatggg aagcatggta ttttcgtccc
     7801 cagctgtcgg aagtgtcgta tttccacctg aattgcttgg gttacttgta ccattgccat
     7861 ttcctgttgg agtaaccgtt gttgggtcat tggaatctgg ggtggcattt ttagtaaact
     7921 gggcgtatag cgttatattt cccgccggca tttttcctgt cgcaaaatcc catttagttc
     7981 cacctgtttt agcatcatac caacctttga acgtatagcc atccttcgtt ggcgctgctg
     8041 gttcttctag caagctttga taagtgactt tttgcgtcgt taacttccca tcgatgtcga
     8101 atgtggctgt atagctatta atcgtgaact gcgcgtataa agtgatgtcc tctgctggca
     8161 ttttgtctgt cgcaaaatcc catttattcc cgccagtttt cgcatcatac cagcctgtga
     8221 aagtgtatcc ttctttggtt ggggctgttg gttcttgaag caatttcgtt tcttccacta
     8281 cttcatttgt tttcactcca tctacgtcaa atgtcgctgt ataagcattg tgaagtggtt
     8341 gaatcactgt tccgctaaaa gaaccctgtg ctaattgttt attaaatgtg taacttactt
     8401 ggttagtata attagccaag ttccaactaa tattcgggct tgcataaaca ccattatcgc
     8461 taattgtatc tggtgagatt aacgctccca tttcatcctt aatgttatta gggaccacaa
     8521 gctcttgttg atacaatact ggttcactcg ttattttttg atcatctaaa gtaataccaa
     8581 aaaaattggg tgaattaaaa agtggttgta aagaactaat atcactgatt tgattttcag
     8641 ctaaaaatac atagtttaaa ttagccaaat tcgcaattgg ggttacatca ctaatctgat
     8701 ttccatctag tcgcataatt tccatagccc ctaagcttga aataggactc aaatcactta
     8761 tttggttatt gtctgcagtt aaatgactta actttgctaa gccagcaatt gggcttaaat
     8821 cactgatatc attataatct attccaagac caattaagtt tttcaaacct gaaactgggc
     8881 ttatatccgt tatttgattg ttgcttagtt ctatggtttc taaattgatt aaattactaa
     8941 ctccatttaa ctgttttatt tgatttccag ctaatcttaa ttggtgcaaa cttgtcacat
     9001 ttgctagtgc acttatatcg cttaattgat tgtcatttgc ttctaatatc cttaatttag
     9061 atagtcctgc aagtgaattt aaatccgtta ttttattatt atttaaaatt aatgtatcta
     9121 tattatttaa atactgcgcc ccctctaaag aagctatatt gctactttct gcggttacat
     9181 cacgtataga atctaattct gtttgtgaaa catcagatgt agtactaggt ttatttaagg
     9241 ttgcttttat tgcgtttgct aaattctcat ctgtaaaaat ttcgttgatt ggcgtcggtt
     9301 gtgcaattac tgccgcctgt acttcctctt ttgagctcgt ccctacccaa aagctaattg
     9361 ccattactac agccagagtt accaagatac gtaatgctgt tttatttctt ttcattaact
     9421 tatctccttt ataatattat tccatttttt aggattgtga gtgtactcat agctgaatta
     9481 ttttattata acttaataga attctgttta atcactaaaa ttagacccgt tcatgattag
     9541 ttgtgacgtt tagatgaatt tattaactaa taaaacagct gaagtctata aaccgcagct
     9601 gttttcgatg ttattttact ttgattgatt tgcggagaat tagcgttgct gtccctaaca
     9661 agaaaactcc gataaaaatg ggcagcatgg tattttcatc cccagctgtc ggaagtgtag
     9721 tattgcctcc tgaattgctt ggattgcttg taccatcacc atttcctgtt ggggtattag
     9781 gggttggatc atttggattt gggctatcat ttttagtgaa ttgggcatat agcgtaatat
     9841 ttcctgctgg catttttcct gtcgcaaaat cccatttagt tccaccagtt ttagcatcgt
     9901 accaaccttt gaacgtataa cctgctttcg ttggtgctgc tggttcttct aacaaacttt
     9961 gataagtgac tttttgcgtc gttattttcc catcattgtc aaatgaggca gtataactat
    10021 taatcgtgaa ctgagcatac aatgtgatat tttctgctgg cattttatcc gtgctgaaat
    10081 cccatttatt cccgccagtt ttggcatcat accagcctgt gaaagtgtaa ccttctttcg
    10141 tcggtgctgt tggttcttta attaattcat tcgcgccgac agtcatactt gtttgttttc
    10201 catccacatc aaaaaccgca gtataagctt ctgttaatgg ttgtgtaact gtgccactga
    10261 aaggaaccgt tgtatttttg aaagcgactg attggttaaa cgtgtagcta acattattaa
    10321 taaaactagt taaattccat gttaaatttg gactagcata tgttccattg tcgctaatag
    10381 tagcaggtgc aataggagcg ccagaaggac cttttaccac attaggaacg acaagattat
    10441 tttgataata cacgggttgg ttggtaattg tttgattcgt taaagtgacg ataaataagt
    10501 tcgataaatt agcaagtggg ctgacatcac taatttgatt atctttcaaa tgaacttcta
    10561 taaggttagg taaactcgca agtggcgaaa tatcacttat tttattatca tcagctctta
    10621 aattcgttag tttagataaa ttagcaagtg gggttaaatc acttacttgg gtatttccga
    10681 ttgataagta ttgtaaatta gtgagtcctg caagcgggct tatatcggtt atttgattga
    10741 gatccaaata taatacctgc aaattggaaa gccctgcaag tggagtcaca tctgtaattt
    10801 gcgtagaagt taaatctagc gttttaatgc tttgtaaccc agcaatcgcg cttacatttt
    10861 ttaacgggtt tccagataat tcaagttctg ttattttcgt taaattttta agaggagtta
    10921 aatccgttat ttgattatcc ttaagttcta accctatcaa attatttaag tactgcattc
    10981 cttcaatcgt tgttactcca gtattaaatg ctgataaagt aactattcca tctaaatctg
    11041 cttgcgtaac agtatctgtt acattagatt ttcctgtcgc tgttttaact gcattcgcaa
    11101 gagccggatc agggaaaatc acattaattg gggttggctg cgcaatgctt tccgcgcgaa
    11161 cctccgcccc ttgacttgtc gttacatata gactaatacc gagaatagca gctaccatta
    11221 aaactagttt aaatacagaa ttccatcgtt ttt
//
LOCUS       DASDXX010000080        11238 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.080, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000080 DASDXX010000000
VERSION     DASDXX010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11238
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.080"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            195..1889
                     /gene="ilvD"
                     /locus_tag="U0280_001624"
     CDS             195..1889
                     /gene="ilvD"
                     /locus_tag="U0280_001624"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM2271574.1"
                     /translation="MRSDKIKKGVEQAPARSLLHATGQIKSPGDMDKPFIAICNSYID
                     IVPGHVHLRELADVAKEAIREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSREVIADA
                     AETVINAHWFDGVFYIPNCDKITPGMLLASVRTNVPAIFCSGGPMKAGLSAHGKALTL
                     SSVFEAVGAFKDGSMSQEDFLDMEANACPTCGSCAGMFTANSMNCLMEILGMAVPGNG
                     TTLAVSDARRDLIRESAFHLMDLVKKDIRPRDIITKDAIDDAFALDMAMGGSTNTVLH
                     TLALANEAGIEDYDLERINDIAKRVPYLSKIAPSSSYSMHDVHEAGGVSAIVKELVDL
                     GGAIHPDRITVTGKTIRENVADAKINNTDVIHPKENPYSPVGGLSMLFGNIAPKGAAI
                     KVGGVDPSVQVFKGEAICFSSHDEAVEAIDNHTVREGHVVVIRYEGPKGGPGMPEMLA
                     PTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAAAGGPIALVHDGDIITIDLP
                     NRTLNVDVSDEVLEERRKELPKFKAKVKTGYLARYTALVTSAHTGGILQIPEDLID"
     gene            1907..3628
                     /gene="ilvB"
                     /locus_tag="U0280_001625"
     CDS             1907..3628
                     /gene="ilvB"
                     /locus_tag="U0280_001625"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEM2271575.1"
                     /translation="MIDTTKTNEKATKKQNKSGAELLIDSLKKQQVEMIFGYPGGAVL
                     PLYDAFYDCDIPHILTRHEQGAIHAAEGYARVTGKPGVVVVTSGPGATNVLTGIADAM
                     SDSIPLVIFTGQVHTPGIGKDAFQEADMIGLTIPITKYNYQVRDVRDLPKIVNEAFHI
                     ASTGRKGPVVVDIPKDMGIIQTESVRPDTIDLPGYQPTYSPNPLQLEKLMQSLSAASK
                     PLILAGAGVNHARATAELLEFAERYQIPIVNTLLGLGSFPQSHDLFLGMGGMHGSYAA
                     NMALTDCDLLINFGSRFDDRLASAPKEFATKATIAHIDIDPAEIGKIIETQIPIVADI
                     NETLTQLLQMELPVHPDTSHWYKLNMTRKNRHPFNFDRTKKAEIKPQRVIELIGEITQ
                     GEALVSTDVGQHQMWAAQFYPFQFDHQIITSGGLGTMGFGFPAAVGAQLAFPDKTVVA
                     IVGDGGFQMTNQELAILNDYQINVKTVIINNGSLGMVRQWQEKFHGERYSHSIFTSQP
                     DFVKLAEAYGVKGVRLTNPETLEKDLRKAFAHPGPIVIDVHVAKDELVLPMVPSGKPN
                     HQMEGVE"
     gene            3629..4120
                     /gene="ilvN"
                     /locus_tag="U0280_001626"
     CDS             3629..4120
                     /gene="ilvN"
                     /locus_tag="U0280_001626"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEM2271576.1"
                     /translation="MRRIITATVNNSSGVLNRITGVISRRQYNIDSISVGWTEIPNVS
                     RITIVVHVDSLYEIEQVTKQLNKQIDVLKVSDITDDAHIERELALLKINSPAALRSEL
                     NAVIEPFRATVIDVGTKNVVIQVTGTSEKIDAFVDTVRPYGIKQMARTGVTGFTRSPK
                     KMG"
     gene            4219..5214
                     /gene="ilvC"
                     /locus_tag="U0280_001627"
     CDS             4219..5214
                     /gene="ilvC"
                     /locus_tag="U0280_001627"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEM2271577.1"
                     /translation="MTKVYYEDAVKNNALEGKTVAVIGYGSQGHAHSQNLRDNGNNVI
                     IGIREGKSAESARNDGFDVYSVSEAAEKADVIMILLPDETQGETYENEIKPNLKAGNA
                     LVFAHGFNIHFDVINPPNDVDVFLVAPKGPGHLVRRTFVEGGAVPSLFAIYQDATGNA
                     RDTALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGATHLIQAGFETLVEAGY
                     QPELAYFEVLHEMKLIVDLMYEGGMEKMRHSISNTAEYGDYVSGPRVVTADTKKAMKE
                     VLTDIQNGNFAKSFIDDNKNGFKEFHRMRKEQQGHQIEKVGAELREMMPFVKPQH"
     gene            5372..6910
                     /locus_tag="U0280_001628"
     CDS             5372..6910
                     /locus_tag="U0280_001628"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEM2271578.1"
                     /translation="MKKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEA
                     GFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATS
                     DVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDA
                     GATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIE
                     NGARRVEGTINGIGERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLS
                     GMPVPRNKAVIGGNAYAHESGIHQDGVLKNPDTYEIITPALVGVDKNSLPLGKLSGKH
                     AFNTRMEEMGYTLTEQEQKDAFKRFKQLADAKKEVTEEDLHALILGQSSESADDFELK
                     HLQVQYVTGGVQGAIVRIEERDGALVEDAATGSGSIEAIYNTINRLMKQDIELTDYRI
                     QAITAGQDAQAEVHVVIKNDKGAVFHGIGIDFDVLTASAKAYLQASGKSKTASKQADF
                     EEVK"
     gene            6912..7964
                     /gene="leuB"
                     /locus_tag="U0280_001629"
     CDS             6912..7964
                     /gene="leuB"
                     /locus_tag="U0280_001629"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEM2271579.1"
                     /translation="MTYKITSLAGDGIGPEIMTSGLQVLEAVAKKYNHTFEIESHPFG
                     GAGIDVAQDPIPSSTLKACRDADAILLGAIGGPKWDNAPKRPEDGLLALRKALGLFAN
                     IRPIQVPSSITHLSPLKKEIVENTDFVVVRELTGGLYFGEPKYWDNEAAVDSLTYTRA
                     EIERIIEKAFEIAATRNKKVTSVDKANVLASSKLWRKIADEVASRHPDITLEHLYVDA
                     AAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGS
                     APDIANQNIANPMSMISSVSMMLRQSFSLFEEADATDAATARTMQAGFLTADLGGNTS
                     TTDFTNEVLKQIEGGE"
     gene            7966..9354
                     /gene="leuC"
                     /locus_tag="U0280_001630"
     CDS             7966..9354
                     /gene="leuC"
                     /locus_tag="U0280_001630"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEM2271580.1"
                     /translation="MGKTLFDKLWNRHVIYGKEGEPQLLYVDLHLIHEVTSPQAFEGL
                     RMENRPLRRPDKTFATMDHNVPTEDIFNIQDLVAKKQIEALQTNCEEFGVTLADMGSD
                     RQGIVHMVGPETGLTQPGKVIVCGDSHTATHGAFGAIGFGIGSSEVEHVFATQTIWQQ
                     KPKSMGIEINGNLPKGVYAKDIILHLIATYGVAFGTGYAVEYYGETIRNMSMEERMTI
                     CNMAIEGGAKMGMMAPDETTFEYVRGREYAPADMDKAISDWKTLQTDPDAEYDLHIKM
                     DASILEPYVTWGTNPEMGVPFSKAFPEIKDMNYERAYEYMGLKPGQTAEEIELGYVFI
                     GSCTNARLSDLEEAARIVKGNKVKNNIRALVVPGSRQVRNAAESIGLDKIFIEAGFEW
                     REPGCSMCLGMNPDQVPDGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAINGHFI
                     DIRKEAVISGGN"
     gene            9341..9922
                     /gene="leuD"
                     /locus_tag="U0280_001631"
     CDS             9341..9922
                     /gene="leuD"
                     /locus_tag="U0280_001631"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEM2271581.1"
                     /translation="MEEIKVHIGKTVALMNDNIDTDQIIPKSFLKRIERTGFGEFLFD
                     SWRYLPNRKPNPDFPLNAPDRQEATILITGDNFGCGSSREHAAWALLDYRFRVIIAGS
                     YSDIFYMNCTKNGVLPIVLPREAREKLAKIAADENVTIDLPNQQVISSVGTYPFEIDA
                     TWKNKFINGLDDIAITFEHIDAIKAYEQKVDSI"
     gene            9941..11209
                     /gene="ilvA"
                     /locus_tag="U0280_001632"
     CDS             9941..11209
                     /gene="ilvA"
                     /locus_tag="U0280_001632"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEM2271582.1"
                     /translation="MELVDLLVTEEDVEKAYEVLKAVVKHTPLEYDFYLSEKYHCNVY
                     LKREDLQRVRSFKLRGAFYAISRLSAEQLEKGVVCASAGNHAQGVAYTCKRMTVPATI
                     FMPTTTPQQKVSQVKFFGGSNVEVVLVGDTFDASATAAKEFAATHGQTFIPPFDDPDI
                     IAGQGSLAVEMVKDLNKAHEQADYVFAGIGGGGLISGVATYLKAKSPITKIIGVEPDG
                     APSMTAALKQNQVVTLDKIDKFVDGAAVKEVGGLTFQHAKVLVDEVTTVSEGAVCSTI
                     LDMYTKQAIVAEPAGALSVAALEIYREEIKDKTVVCIVSGGNNDINRMQEIEERSLLH
                     EGLKHYFIVNFSQRPGALKEFVNDVLGPHDDITKFEYTKKVNRGNGPVIIGVLLQDKN
                     DYEGLLERVAAFDPSYIPINDNQTLYTLLV"
BASE COUNT         3431 a         2235 c         2492 g         3080 t
ORIGIN      
        1 attctagcaa agcatcccat tgttttcatc attggggtgc tttttcttta gctagatttc
       61 gagttttcaa gcatcgagaa gccattatca agcaagcagc tacttaatca tatatattaa
      121 tgccacgcta tttagtgaat tctaaaaatt cagtgtcggc aaataattct taattagaaa
      181 tggggtaaag tcatatgcgt agtgacaaaa taaaaaaagg tgtcgaacaa gctccagcaa
      241 gaagtttgct gcatgctaca ggtcaaatta aaagtccagg tgatatggat aaaccattta
      301 tcgctatttg taactcttac attgatatcg ttcctggtca tgttcatttg cgagaattag
      361 cggatgtggc taaagaagct attagagaag ctggcggtat cccatttgaa tttaatacga
      421 ttggtgtaga tgacggcatt gcgatgggac atatcggtat gcgctattcc cttccctctc
      481 gtgaagttat cgcggatgca gcggaaacgg taatcaatgc gcactggttt gatggggttt
      541 tctacatccc aaactgtgac aaaatcacgc ctggaatgct tctcgcttct gttcgtacaa
      601 atgtacctgc tatcttctgt tctggtggcc caatgaaagc tggattatct gcacacggaa
      661 aagcactcac tctctcttct gtttttgaag cggttggcgc atttaaagat ggcagcatgt
      721 cgcaggaaga ttttcttgat atggaagcta atgcgtgtcc gacttgcgga tcttgcgcag
      781 gaatgtttac agcaaactca atgaattgtt tgatggaaat cctaggtatg gctgttccgg
      841 gaaatggtac aacacttgct gtttctgacg cacgccgtga tcttattaga gaatctgctt
      901 ttcatttaat ggatttagtt aaaaaagata ttcgtcctcg tgacattatt acaaaagatg
      961 cgattgacga tgcttttgcg ctagatatgg caatgggtgg ttcgacaaat accgtattac
     1021 atacacttgc acttgcaaac gaagctggta ttgaagatta tgatttggaa cgtatcaatg
     1081 atattgctaa acgtgttccc tacctttcca aaattgcacc ttcctcttct tactcaatgc
     1141 atgatgttca cgaagctggc ggtgtttcag ccattgttaa agaactggtt gatctaggtg
     1201 gcgcaataca tccagacaga atcactgtta ctggtaaaac gattcgcgaa aacgtagctg
     1261 atgcaaaaat taataatacc gatgttattc atccaaaaga aaatccgtac agcccagttg
     1321 gcggactttc gatgttgttt ggtaacatcg caccaaaagg agctgctatc aaagttggtg
     1381 gcgtagatcc ttccgtacaa gttttcaaag gagaagcgat ttgctttagt tctcatgatg
     1441 aggcggtgga agcaattgat aaccataccg tccgcgaggg gcatgtcgtg gtcattcgct
     1501 acgaaggtcc taaaggcggt ccgggaatgc ctgaaatgct tgcgccaaca tctagtattg
     1561 ttggtcgagg tttaggaaaa gatgttgctt tgattacaga tggtcgcttt tctggggcta
     1621 ctcgtggtat cgcagttggc cacatttctc cagaagctgc agctggtggt cctatcgccc
     1681 ttgttcatga cggcgatatc atcacgattg atttgccaaa ccggacgtta aacgtggatg
     1741 tttctgatga ggttttggaa gaacgaagaa aagaattacc gaaatttaaa gctaaagtaa
     1801 aaactggtta ccttgcaaga tatactgcgc ttgtaactag cgcccacact ggtggcattt
     1861 tgcaaattcc agaagattta atcgactaaa aaatgaggtg ataagcgtga ttgatacgac
     1921 gaagacaaat gaaaaagcga caaaaaagca aaataaaagt ggtgcggaac ttttaattga
     1981 ctccttgaaa aagcaacaag tcgagatgat ttttggctat ccgggtggtg cggttctccc
     2041 tctctacgat gctttttacg actgtgatat tccgcatatt ctaacaagac acgagcaagg
     2101 agcgattcat gctgcggaag gttatgcacg tgttactggg aaacccggtg tggtagttgt
     2161 aacaagtgga cctggggcga caaatgtatt aactggtatt gcggatgcaa tgagtgattc
     2221 gattccatta gtgattttca ccggacaagt tcatacgcct ggtatcggaa aagatgcctt
     2281 ccaagaagcc gatatgattg ggctaaccat tccaattact aaatataatt accaagtgcg
     2341 tgatgttcgt gacttaccaa aaattgtcaa tgaagctttt catattgcaa gtactggtcg
     2401 taaaggtcct gttgtcgtgg atattccaaa agacatgggg attatccaaa cagagtctgt
     2461 acgaccagat acgatagatc tgccgggtta tcaaccgact tattcaccaa acccacttca
     2521 actggaaaaa ctaatgcaat ctctttctgc cgcaagcaag ccactaatac ttgccggagc
     2581 tggcgtcaat catgcgagag ctacagctga attactagaa ttcgctgaac gctatcaaat
     2641 tccaatcgtg aatacgctgc ttggtctagg aagtttcccg caaagtcatg atttgttcct
     2701 tggtatgggc ggcatgcacg gttcatacgc ggcaaacatg gcacttacag attgcgattt
     2761 gctcattaat tttggttccc gcttcgatga caggcttgcc agtgcgccaa aagaatttgc
     2821 cacaaaagca acgattgcac atatcgatat tgatcctgct gaaattggca aaattatcga
     2881 aacacaaatt ccgattgtag ctgatattaa cgaaacactt acacaactac tacaaatgga
     2941 acttccggtt catcctgata catcccattg gtacaaatta aatatgaccc gtaaaaaccg
     3001 tcatcctttt aattttgata gaacgaaaaa agcagaaatt aaaccacagc gtgtgattga
     3061 gctaattggt gaaattacgc aaggtgaagc gcttgtttct accgatgttg gccagcatca
     3121 aatgtgggcg gcacagtttt atccattcca atttgatcat caaattatta cgagtggcgg
     3181 gcttggcaca atgggctttg gctttccagc agctgttggt gcgcaacttg ctttcccaga
     3241 taaaacggta gtcgccattg ttggggacgg tggtttccaa atgaccaatc aagaactagc
     3301 gattttaaat gattaccaaa tcaatgtgaa aacggtcatt atcaataacg gttcgctcgg
     3361 catggttcgt cagtggcaag aaaaattcca cggcgaaaga tattctcatt cgattttcac
     3421 gagccaacca gattttgtta aactagctga agcttacggt gtcaaagggg ttcgcttgac
     3481 gaatcctgaa acgctagaaa aagatctaag aaaagccttc gctcaccctg gaccgattgt
     3541 cattgacgtt catgtggcca aagatgagct agtacttcca atggttccaa gcggcaaacc
     3601 aaatcaccaa atggaaggag tggaataaat gcgccgaatc attaccgcta cagtaaacaa
     3661 ctcttctggc gtgttaaatc gtatcactgg ggttatctcc agacgccaat acaatattga
     3721 tagcatctct gtcggctgga ccgaaatccc aaatgtttct cggattacca tcgtcgtcca
     3781 tgtcgattcc ttatacgaaa tcgagcaagt aactaaacaa ctcaataaac aaatcgatgt
     3841 gctcaaagtg agcgatatta ctgacgatgc gcacatcgaa cgcgaactag ctttacttaa
     3901 aatcaactcc cctgctgcct tacgatctga gctaaacgca gtcatcgaac catttcgcgc
     3961 cactgtcatt gatgtcggca cgaaaaatgt cgtcattcaa gtaactggaa caagtgaaaa
     4021 aatcgatgct ttcgttgaca cagttcgacc gtatggtatt aagcaaatgg cgaggaccgg
     4081 cgtcacaggc tttacaagaa gccctaaaaa aatgggttaa aaatcattta ctacagagca
     4141 gtctcttgct ttgctagcat cagaacagca catcgctatt ctgaaatata aaaagaaatt
     4201 agttggaggt taggaaaaat gacaaaagtt tattatgaag atgcagtaaa aaacaacgca
     4261 ctagaaggta aaacagtagc agtaatcggg tacggttcgc aaggtcacgc acattctcaa
     4321 aatctacgtg acaatggcaa taacgttatt atcggcattc gcgaaggaaa atctgccgaa
     4381 tctgctagaa acgatggctt tgatgtttat tctgttagcg aagccgctga aaaagcagac
     4441 gttatcatga ttcttttgcc agatgaaacg caaggtgaaa catacgaaaa cgaaattaaa
     4501 cctaacctaa aagctggcaa tgcgcttgtt ttcgcacatg gtttcaacat tcattttgac
     4561 gtaattaatc ctccaaacga tgtggatgtt ttcctagtag ctccaaaagg tcctggtcac
     4621 ttagttcgcc gtacatttgt tgaaggtggc gcggttcctt ccctattcgc tatctatcaa
     4681 gatgccactg gaaacgcacg cgacacagcc ctttcctatg caaaaggtat tggcgcaact
     4741 cgtgctggcg ttatcgaaac cactttcaaa gaagaaaccg aaaccgatct atttggcgaa
     4801 caagcagttc tttgtggggg tgcaactcac cttatccaag ctggttttga aacacttgta
     4861 gaggctggct accaaccaga acttgcttat tttgaagtat tacacgaaat gaaactaatt
     4921 gttgatttga tgtatgaagg cggcatggaa aaaatgcgcc actcaatctc caatacagct
     4981 gaatatggtg attatgtttc cggtcctcgt gttgttacag ctgatacgaa aaaagcaatg
     5041 aaagaagtac ttaccgacat tcaaaatggt aactttgcta aatcattcat tgacgacaat
     5101 aaaaatggtt ttaaagaatt ccatagaatg cgcaaagaac aacaaggtca tcaaatcgaa
     5161 aaagttggtg ctgaacttcg tgaaatgatg ccgtttgtta aaccacaaca ttaatactta
     5221 attcggattg ctaggtgaga tttcttgcct agcaaccgtt atcctttttc aatatgagtt
     5281 taaggaagaa cctttttctt tcctaaactg atactgaaag caggaaaaat ccaagcttcc
     5341 ctatctaata taaaacaaga ggtgaaatcg aatgaagaaa atccagtttt ttgatactac
     5401 acttagagat ggcgaacaaa cccctggagt taattttgac gtaaaggaga aaatccagat
     5461 tgccttacaa ctcgaaaaac ttggaattga tgtgattgaa gccggctttc cgatttcttc
     5521 tcctggagat tttgaatgcg ttaaggcgat tgcaaaagcg attaaacatt gttctgtaac
     5581 agggctagcg cgctgtgttg aaggagatat tgaccgtgcc gaggaagcgc taaaagacgc
     5641 tgtttctccg caaatacata tcttccttgc aacgagcgat gtgcatatgg aatacaaatt
     5701 aaaaatgagt cgggcggaag ttcttgcttc cattaaacac cacattagtt atgcgagaca
     5761 aaaatttgat gttgtacagt tttcaccaga agatgcaact cggtcagatc gtgcttttct
     5821 gattgaagca gttcaaacag cgattgatgc aggagcaact gtcatcaaca ttccagatac
     5881 ggtcggatat acaaacccca ccgaatttgg gcaattattc caagatttgc gccgcgaaat
     5941 aaagcaattt gatgatatta ttttcgcttc tcattgccat gatgaccttg gtatggcgac
     6001 agcaaacgca cttgctgcaa tcgaaaatgg cgcaagacgc gtcgaaggta cgattaatgg
     6061 gattggtgag cgtgctggga atacggcact ggaagaagtt gcggtagcgc ttcatattcg
     6121 caaagatttt tatcaagctg aaacaaacat tgtattgaat caatttaaaa attcaagtga
     6181 tttgattagc cgcttgtctg gtatgcctgt tccacgtaac aaagctgtaa ttggtggcaa
     6241 tgcttacgcg catgaatctg gtattcatca agatggtgtc ctaaaaaatc ctgatacgta
     6301 tgaaatcatc acccctgctc ttgtcggcgt ggataaaaac tctcttccac ttggcaaact
     6361 ttctggcaaa catgccttca atacgcgcat ggaagaaatg ggctacacac taaccgaaca
     6421 agaacaaaaa gatgccttta aacgtttcaa acaattagca gatgcgaaaa aagaagtaac
     6481 agaagaagac ttgcacgcgt taattctcgg acaatcttcc gaatcagccg atgatttcga
     6541 actaaaacat ttgcaagttc aatatgttac tggcggcgtc caaggtgcga ttgttcgcat
     6601 tgaagaacgt gatggcgctc tagtagaaga cgcagcaact ggttcaggta gcattgaagc
     6661 gatttataat acgattaacc gtcttatgaa acaagatatt gaattaaccg attatcgtat
     6721 ccaagcaatt acagccggtc aagatgccca agcagaagtc catgtcgtca ttaaaaatga
     6781 caaaggcgct gtgttccatg gtatcggtat tgattttgac gttttaactg ctagtgctaa
     6841 agcttatttg caagcatcag gcaaaagcaa aaccgccagt aagcaagctg atttcgagga
     6901 ggtaaaataa cgtgacctat aaaattactt ccttagctgg cgacggaatt ggtccagaaa
     6961 ttatgacttc tggacttcaa gtattagagg cagtcgcaaa aaaatacaac catacgtttg
     7021 aaattgaatc tcatcccttt ggcggcgcag gaattgacgt agcacaagac ccaatccctt
     7081 cttccacctt aaaagcgtgc cgagacgccg acgccatttt actcggagca attggtggtc
     7141 caaaatggga taatgcgccg aaacgtcccg aagatggcct acttgcactt cgaaaagcgc
     7201 ttggtctttt cgccaacatt cgacctatcc aagtcccaag ctccatcacg cacctttctc
     7261 ctttaaaaaa ggaaattgtt gagaacactg attttgtcgt tgttcgtgaa ttgactggtg
     7321 gactttattt cggagaaccg aaatattggg ataatgaggc agcagtggat tcattaacat
     7381 atacccgtgc agaaatcgag cgaattatcg agaaagcttt cgaaatcgcc gctactagga
     7441 ataaaaaagt tacttcagta gataaagcga atgtgcttgc ttctagtaaa ttatggcgaa
     7501 aaatcgctga tgaagtcgca agtcgtcacc cagatatcac actagaacat ctatacgtcg
     7561 acgctgccgc aatgcttatg attcagcgac caacgacctt tgatgttatc gtgacagaaa
     7621 acttatttgg cgatatttta agtgatgaag cgtctgttat tactggctcg cttggaatgc
     7681 tcccttctgc tagccacgcg gaaaacggac catctttata cgaaccaatt cacggatctg
     7741 cgccagatat cgctaaccaa aatatcgcga atccaatgtc gatgatatcc tctgtatcca
     7801 tgatgcttcg tcaatctttc tctctttttg aagaagcaga tgcgactgat gcagctacag
     7861 caagaacgat gcaagctgga tttttaactg ctgacctcgg aggcaatact tccacaactg
     7921 attttacaaa tgaagttcta aaacaaattg aaggaggaga ataaaatggg gaaaacactt
     7981 tttgataaac tttggaatcg ccatgtcatt tatggcaaag aaggtgaacc gcaattatta
     8041 tacgttgacc ttcatttgat tcatgaagtt acttctcctc aagcgtttga aggacttaga
     8101 atggaaaatc ggccactgcg tagaccagat aaaacgttcg cgacaatgga tcataacgtt
     8161 ccaactgaag atattttcaa cattcaagac cttgttgcta aaaaacaaat cgaagcactg
     8221 caaaccaatt gcgaggaatt tggcgtgacg ctagctgata tgggtagtga tcgccaagga
     8281 atcgtgcata tggttggacc agaaactggg ctaacacaac ctggaaaagt cattgtatgt
     8341 ggagattcgc atactgcaac tcatggagca tttggagcaa ttggctttgg gattggttct
     8401 agtgaagtag agcatgtttt tgcgactcaa accatttggc aacaaaagcc aaaatcaatg
     8461 ggcatagaaa ttaacggcaa tcttccaaaa ggtgtctatg caaaagatat tattttgcat
     8521 ctgattgcca cgtatggcgt cgcttttgga actggctatg ccgttgagta ttacggcgaa
     8581 actattcgca atatgtcgat ggaagaacgg atgacgattt gtaatatggc aattgaaggt
     8641 ggcgcaaaga tgggcatgat ggcgccagat gaaactactt ttgaatatgt gcgcggtcgt
     8701 gaatacgctc ccgctgatat ggataaagca attagtgact ggaaaacgct ccaaacagat
     8761 ccagatgccg aatatgacct tcatatcaaa atggatgcga gcattttgga accgtatgtc
     8821 acttggggaa cgaatcccga aatgggagtg ccattttcta aagcatttcc ggaaattaaa
     8881 gatatgaact atgagcgtgc ttatgaatat atggggctaa aacctggtca aactgcagaa
     8941 gaaatcgagc ttggctatgt gtttattggt tcttgtacaa atgccagact ttctgactta
     9001 gaagaagctg ctcgtatcgt caaaggaaat aaagtgaaaa ataatattcg cgcactcgtg
     9061 gtccctggtt ctcgccaagt gcgtaatgcg gcagaatcta tcggactaga taaaattttt
     9121 atagaagctg gctttgagtg gcgtgaacct ggttgttcga tgtgtctagg aatgaaccct
     9181 gatcaagtac cagacggcgt tcactgtgct tctacttcga accgaaattt tgaaggtcgt
     9241 caaggtaaag gcgctcgtac tcatcttgtt tcaccagcaa tggctgctgc tgcggcaatt
     9301 aacgggcact ttatcgatat tcgaaaggag gcggttatca gtggaggaaa ttaaagtaca
     9361 cattggaaaa acagtagcgc taatgaatga caatattgat accgaccaaa tcattccaaa
     9421 aagtttctta aaacgcattg agcgaacagg ctttggcgaa tttctctttg atagttggcg
     9481 ctacctgccg aaccgtaaac caaacccaga cttcccgctc aatgctccag atcgtcagga
     9541 agcgactatt ttaattacgg gagataactt tggttgcggg tcctccagag aacatgctgc
     9601 gtgggcacta ctagactacc gtttccgtgt aattatcgct ggcagttata gtgatatatt
     9661 ttatatgaat tgtacaaaaa acggcgtgct ccctatcgtt cttcctagag aggcgcgtga
     9721 aaaattagcg aaaattgcag ccgatgaaaa tgtgaccatt gacttgccaa atcaacaagt
     9781 tatcagttca gttggtacct acccgtttga gattgatgct acttggaaaa ataaatttat
     9841 taatggactg gatgatatcg ccattacatt tgaacatatt gatgcgatta aagcctatga
     9901 acaaaaagtg gattcaatat aagaaaaggt agtgaggatg atggaattag ttgatttatt
     9961 agtaacagaa gaagatgtcg aaaaggccta tgaagtctta aaggcggtcg tcaaacatac
    10021 gccactagaa tatgattttt atctttcgga aaaatatcat tgcaatgtct atctgaaacg
    10081 cgaagatttg caaagagtgc gttcttttaa attacgtggt gctttttatg ctatttctag
    10141 attatcagcg gaacaattgg aaaaaggtgt ggtatgtgca agtgcgggaa accatgcgca
    10201 aggagttgca tatacgtgca aacgaatgac cgtcccagct acgattttta tgccaacgac
    10261 tacgccgcaa caaaaagtat cacaagtaaa atttttcggt ggtagtaatg tcgaagtggt
    10321 tttagttggc gatacgtttg atgcttctgc aactgccgcg aaagaatttg ctgcaacgca
    10381 tggccaaact ttcatccctc cgtttgatga tcctgatatt atcgctggcc aaggctctct
    10441 tgctgtggag atggtgaaag atttaaataa agcacatgag caagcagatt atgtttttgc
    10501 aggaatcggt ggtggtggct taattagcgg tgttgcaacg tatctcaaag caaagagccc
    10561 gattacaaaa atcatcgggg tagaacctga tggcgcgcct tcaatgacag cagctttaaa
    10621 acaaaatcaa gtcgtaacac tagataaaat cgataaattt gttgatggcg ctgcggtaaa
    10681 agaagttggt ggcttaacgt tccaacatgc gaaagtatta gttgatgaag tgacaaccgt
    10741 ctctgaggga gctgtttgtt ctacgatttt ggatatgtat acgaagcaag caattgttgc
    10801 agaacctgct ggagcactat ccgttgccgc acttgaaatt taccgtgaag agattaaaga
    10861 caagaccgtt gtctgtattg taagtggcgg aaacaacgac atcaaccgga tgcaagaaat
    10921 tgaagagcgt tccctcttac acgaaggatt aaaacattat tttatcgtca atttctcgca
    10981 gcgtcctggg gctttgaaag aatttgttaa cgatgtgctc ggtccacatg acgatatcac
    11041 caaattcgaa tatacgaaaa aagtgaatcg aggtaatggg cctgtaatta tcggtgtttt
    11101 gttgcaagat aaaaatgatt atgaaggatt gcttgagcgg gttgctgctt ttgacccgag
    11161 ctatattccg attaatgata atcaaaccct atacacatta cttgtataaa aagagttctc
    11221 gtatgatgcg agaactct
//
LOCUS       DASDXX010000081        11234 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.081, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000081 DASDXX010000000
VERSION     DASDXX010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11234
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.081"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..572)
                     /locus_tag="U0280_001633"
     CDS             complement(<1..572)
                     /locus_tag="U0280_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271583.1"
                     /translation="MEERFTTELMFTLTNNPRFQEVAELVYWNEEEIVHCPENNEYVY
                     AIDEGNVTQCAARNSSWGKGSILGFTREETKIHPLSKTVAWKIPLTYVKDILKSMGKI
                     KVADLTMIEKNFLDRNEIDCIQWFIQEMPLRLHTTSWKVALDFFRQEIMQVVPKEICA
                     FQVKELKQQHILYELGYYLEIDVLQFHNYL"
     gene            complement(762..1292)
                     /locus_tag="U0280_001634"
     CDS             complement(762..1292)
                     /locus_tag="U0280_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HEM2271584.1"
                     /translation="MRKLYTYFVLILGVAMIGLGIYLMFNPSTSLQALTIFIGIILVL
                     NGINEVISYFGEQKYWSISKWIMFDGILSILIGGFAIFESNMAERVFIIIFAIWILAS
                     AILRILTAFAVKGLPGWTVLLIMGIIGLIIAVISLFTNMLVAIAVGIILGIFFIFQGI
                     TCLSLWWVIRKGESRK"
     gene            complement(1308..2039)
                     /locus_tag="U0280_001635"
     CDS             complement(1308..2039)
                     /locus_tag="U0280_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2271585.1"
                     /translation="MKLIRTKTYEEMSQEALEVVKQVINENDNPVINTTTGASFDGMF
                     EGLVKGINAGEIPIEKVFLMNLDEYVAKRDASFTVYTYMHQKFYDLINKMPKRVELLD
                     GSLADFTDEIARYKKILAENERDLQILGLGVNGHLGANEPGTPFDARLFLADSDESTI
                     KSTIMYNNLKEDEAPSQMLTLGLADMMDAKQILVTASGERKAEAVKGLLEGPIDESCP
                     ASILRNHPNVVFIIDEAAGSLLTNH"
     gene            complement(2083..2928)
                     /locus_tag="U0280_001636"
     CDS             complement(2083..2928)
                     /locus_tag="U0280_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2271586.1"
                     /translation="MTKKIVFVDVDGTLVTDDGLVPASAKTAIIKARNNGHQVYLCTG
                     RSKPELYDSILSIGFDGIIGAGGGYIEVDDEIVYHKKVANEDVVHMVDFFHEKNLDFY
                     LESNGGLFASENLEAHLDSLVYGDVENDPIAREKKANNPHPFMTSLTYGETNLYRTDV
                     NKACFLENKNVPFEEIKNEFSGKFEVLHCTVPIFGDDSGELMVPDIHKATAIEFLLAH
                     IGAEKNTTIGIGDGMNDAEMLTYCETGIAMGNAKEELKLLADEVTKSVEEDGLYASFL
                     KHGLL"
     gene            complement(3048..5831)
                     /locus_tag="U0280_001637"
     CDS             complement(3048..5831)
                     /locus_tag="U0280_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM2271587.1"
                     /translation="MDMVKNEWKKLFKNKILLLSFVVILFIPLLYASFFLKSVWDPYG
                     KTGDLPVAVVNNDKPVDYNGQTMDVGDQLVTKLKSNKELDWNFLSKEDAEQGLKDGKY
                     YMIVTIPKDFSKNAASVLDKDPKKMELSYKTNGSLNYLGQVVSEQGAKQLKSEVSAEV
                     TKSYAEAIFDKIKESGEGFAQAADGSGKIKDGLVKSQEGNKTISTNLKTLADSSLTFK
                     DGANTLEVGLKTYTDGVNTAAAGGDKLNDGVSTLAAGVGPLKDGVAALDGGATKLASG
                     VSTYTSGVDTLAGGINQAYTGSTALSDGLNKMNGSVPTLASGITQLNNGQKSLATGLD
                     SLVDGSNKLSAGLKELDGNLTDKQGKIAQLKQGMNDLQQGIDQLNKSVNGEDAALAKQ
                     LAALQKSLSDLQNGLTFIKSNANFDAEAIKSKINATAGVSAEDKQKIIDAIQADLDKE
                     TQKSATQVATVEQLQSGLSGLDLAAIQTQVTELQTGVAKISAGYQAVHGGTNEAFNSI
                     HQAINGSGSQTLLGGANQLTAGLKSAQAGNAKLVAGTNQLNNQVPTLTSGVGQLAAGS
                     ANMENGLSQLNDGGNQLASNSGALRSGATELQGGTNQLAAKVPTLAGGVNQLQAGSSQ
                     LVGGLNQLSANSPKLVSGVGQLADGSSKIADGSSKLANGSFQLGDGLTKLTDGSTELT
                     DKLADGAQQVKDTKATDKTFNMIAAPTKLAHNEYTHVSNYGHALAPYVLSLALYVGAL
                     VFNFIMPIRRVSMEGQPAYKWWLSKLSLGFVAAVAMALLEGGIMIALGLRPDNIVEFF
                     GTAIITALAYMFLIMLLAMTFDNPGRFIAMVLLIVQLAGSGGTFPMPLTGWFFNLIHP
                     FLPMTYSIYAFRESLAAGMGPNVYSMSMLVLTIIMIACVGLLYLSMSHLKKRHDAHES
                     ALDDNQKLMALEN"
     gene            complement(5865..6335)
                     /locus_tag="U0280_001638"
     CDS             complement(5865..6335)
                     /locus_tag="U0280_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2271588.1"
                     /translation="MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYIS
                     KILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFS
                     DYHEFAESGIHTITSAFRNADKEYANYLYSQKLSVLVEQVIGKERTTIIDWNEA"
     gene            6728..8251
                     /gene="gadC"
                     /locus_tag="U0280_001639"
     CDS             6728..8251
                     /gene="gadC"
                     /locus_tag="U0280_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate:gamma-aminobutyrate antiporter"
                     /protein_id="HEM2271589.1"
                     /translation="MSKQAKSLTLFGFFAITASMVMTVYEYPTFATSGFHLVFFLLLG
                     GFLWFLPVALCAAEMATVDGWQEGGIFSWVGNTLGERFGFAAIFFQWFQITVGFVTMI
                     YFILGALSYVFDFPALESNPFIKFIGVLIIFWGLTFSQLGGTKNTAKIAKFGFIIGIL
                     IPAIILFILGIAYVAGGNPLHVAFSKEAFIPDFSKASTLVIFVSFILAYMGVEASASH
                     VNEMTNPKRDYPLAMIMLVILAIALNTIGGLTISAVLPLKDLSLSSGVVQTFQALILH
                     FGSGLGWAVKLIAIMIALGVMGEVSAWVVGPSRGMYTAAEQGLLPEKMKKVNKHGVPV
                     PLIMVQGVVVTIWAAILTFGGGGNNLSFLTAISLTVVIYLVGYLLFFIGYLVLIFKKS
                     SLKRTYQIPGGKIVKVIVALIGLVTSVFALCISFVPPASIAAKSDTTYMVILSISFIV
                     TVLIPFIIYAVHDKKDISPKDITHLESSDINKFTHPRARGEHIINPDEKHIMNQDKL"
     gene            8264..9658
                     /locus_tag="U0280_001640"
     CDS             8264..9658
                     /locus_tag="U0280_001640"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HEM2271590.1"
                     /translation="MLYSKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLV
                     KDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNII
                     ADLWHAPKNQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSG
                     YQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDD
                     IYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKY
                     GLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYG
                     FEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLA
                     DRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNNAHIL
                     FHDTQQSGVHGFTH"
     gene            complement(9667..11181)
                     /locus_tag="U0280_001641"
     CDS             complement(9667..11181)
                     /locus_tag="U0280_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2271591.1"
                     /translation="MLTNYIEKDIKRKCLICDFLLKNKHTNLDEIAEYMETSRVTVRS
                     DIHALNEELDGLIVIQMKECVDNWVYQCRLQNGATERKVLYKLYDNSMFLKCVAFFVT
                     NVEERKFTDFMDTYFISHSHAYRLKHKVEAFLREIDLTLDNNRITGKEYRVRYLIALL
                     QAEYGVLIYPLLDEEKQMIDDFMATLNLRINIDTLAHNAEGHAYFRSLISMAFKRDIP
                     TSAIILDEQCQKYIESSSFLAMVRKSSKETLEKELGQEFSYNDYLYLMLIYYSTNFSI
                     IDASMKKVELEQFNELIMKNADLQVLIDLFEEYFGPEVVNHSLFRAALCYFLKKTLFN
                     LQGLIPSNERLLDKKYEPLYMVVKNVLERWNEASEYRVLLIDSHINYLTIHLYPLIYK
                     WNNPVQICIFSFNLINFESCKFQVEQELGRKVTVHETMFNSVEELNQVLTESSEPTIV
                     LCHPNCEMELKEAVDGMIIPISLAFFDRDLVDVERAIQSLRIKEHEKRLAYLRG"
BASE COUNT         3339 a         2477 c         1836 g         3582 t
ORIGIN      
        1 ctcaaataat tatgaaattg taatacatct atttcaaggt aatagcctaa ttcatataga
       61 atatgttgct gcttcaattc ttttacttga aaagcacata tttctttagg aacaacttgc
      121 ataatctctt gtctaaaaaa atctaacgct actttccagg aagttgtatg taatctcaaa
      181 ggcatttctt gaatgaacca ctgaatgcaa tcaatttcat ttcgatctaa aaaattcttt
      241 tctatcatgg ttaaatcagc aaccttaatc ttacccatac ttttcaagat atcctttaca
      301 tatgttaaag gaattttcca ggctaccgtt ttagagaggg gatggatttt tgtctcttct
      361 cgagtaaaac caagaatgct tccttttccc caagaactat ttcttgcagc acattgtgtt
      421 acatttccct cgtcaattgc atacacatat tcattgtttt ctgggcaatg aacaatttcc
      481 tcctcgttcc aatacaccaa ttccgctact tcttgaaacc ttggattatt agttaacgta
      541 aacattaatt ccgttgtaaa cctttcctcc atttatcccg cctcctcaaa atcctcacat
      601 caattcatct ctctttatca taataaaaaa aaagcgagca aagagttctc aaagaaccat
      661 cttctcgctt cttatgtcca ttttgtgaca aaatcacttt ttcagtttta ttaatgtaat
      721 tttcttagca ttttaacgga aaataatata aaaaattatc tttatttccg agattcacct
      781 tttcgaataa cccaccaaag agaaagacat gtaatacctt gaaaaatgaa aaatattcca
      841 agtataatcc caactgcaat cgctactagc atgtttgtga acaaggaaat aacagcaata
      901 atcaatccta taattcccat gataagtagt actgtccatc ctggtaaacc ttttacagca
      961 aacgccgtta aaatacgtaa tatcgctgaa gctagtatcc aaatcgcgaa tataataatg
     1021 aaaacacgtt ccgccatatt tgactcgaaa atagcaaatc caccaataag gattgataaa
     1081 atcccatcaa acattatcca tttggaaata ctccaatatt tttgttctcc aaaataagaa
     1141 atcacttcat taatcccatt taaaactaaa ataatcccaa taaaaatagt tagtgcttgc
     1201 agtgaagtac ttggattaaa cattaaataa attccaagac caatcatcgc cacaccgaga
     1261 attaaaacga aatacgtgta taactttctc atggttttgc ccccttttta gtgattagta
     1321 agtaatgacc ctgccgcttc atcaataata aatacgacat tcggatggtt acgtaaaatc
     1381 gacgctggac aactttcatc aattggtccc tcaagtaaac ctttaacggc ttctgctttt
     1441 cgttcaccag aagcagtgac taagatttgt tttgcatcca tcatatcagc taatccaagt
     1501 gtaagcattt gggatggcgc ttcgtcttct tttaagttgt tgtacatgat ggtgcttttg
     1561 atagtagatt catcgctatc tgccaaaaac aatcgcgcat caaatggtgt tccgggttca
     1621 ttagccccaa gatgtccatt tacccctaag cctagaattt gcaaatcgcg ctcattttca
     1681 gccaaaattt tcttatagcg ggcaatttcg tcagtaaagt cagctaggct tccgtccaat
     1741 aattcgactc tttttggcat tttgttaatt aaatcataga atttttggtg catatatgtg
     1801 taaacagtga aggaagcatc gcgtttagcc acatactcat ccaaattcat taaaaatact
     1861 ttttcgattg gaatttcgcc tgcattaatt ccttttacaa gtccctcgaa cattccatca
     1921 aaacttgctc cggtagttgt attaattacc ggattatcat tttcgttaat gacttgtttg
     1981 acaacttcga gcgcttcttg tgacatttct tcgtatgttt ttgtcctgat taatttcata
     2041 aaaatcctcc tctataagct ttcattaccc gaactatttt ttctaaagca aaccatgctt
     2101 tagaaaactt gcgtataacc catcttcttc aacggatttt gttacttcat ctgcaagtaa
     2161 ttttagctct tctttggcat tccccattgc aataccagtt tcacaataag taagcatttc
     2221 tgcatcattc attccatcac caatgccaat cgtcgtgttc ttctctgcac cgatatgcgc
     2281 tagtagaaat tcaatcgctg ttgctttatg aatatctggc accatcagct ctccactatc
     2341 gtccccaaaa ataggaactg tgcaatgtaa aacttcaaat ttgccactaa attcattttt
     2401 tatttcttca aaaggtacat ttttattttc taggaaacaa gctttattga catctgtgcg
     2461 gtaaagattt gtttcaccgt aagttaggct tgtcatgaaa ggatgcggat tattggcttt
     2521 tttctcgcgc gcaatcggat cattctcgac atcgccataa actaagctat ctaaatgagc
     2581 ttctagattt tcgcttgcaa atagcccacc gtttgactcc aaatagaaat ctaagttctt
     2641 ttcatgaaag aaatctacca tatgaacaac gtcttcattc gctacttttt tatggtaaac
     2701 aatttcatcg tctacttcga tatagccacc acctgcacca ataatcccat caaacccgat
     2761 ggataaaatc gagtcataca gctctggttt agaacgacca gtgcatagat agacttggtg
     2821 accattgttt ctagctttta ttatcgcggt tttggcagat gctggaacaa gcccatcatc
     2881 cgttacaagc gtaccatcta catctacaaa tactattttt ttcgtcatgc aatacctctt
     2941 ttcgtatgtt aatagtttaa ttatagcatt tctttaataa gaaggcgccc catcgcgtaa
     3001 caaaaaagca agattcccat tttcaggaaa ccttgctttt aatttattta gttttctaaa
     3061 gccattaatt tttgattatc atcaagagct gactcatgtg catcatggcg ttttttcaag
     3121 tggctcatag atagatatag taagccaaca catgcgatca tgatgattgt aagaacgagc
     3181 atcgacatac tgtatacatt tggtcccata cctgctgcca gtgactctct gaacgcataa
     3241 atcgagtaag tcattggtaa gaacggatgg attaaattga agaaccatcc agtaagtggc
     3301 attgggaatg ttccgcctga tcccgctaat tgaacaatga gtaataccat cgcgataaaa
     3361 cgacctggat tatcaaatgt catggcaagg agcatgataa ggaacatgta agcaagagct
     3421 gtaataatcg ctgttccaaa gaattcaaca atgttatctg gtcttagtcc tagtgctatc
     3481 atgataccac cttcaagaag tgccatcgca actgctgcga caaaaccaag tgatagttta
     3541 cttaaccacc atttataagc tggttgtcct tccatcgaaa cacgtctgat tggcatgatg
     3601 aagttaaaga caagtgcacc aacatataga gctagtgata acacatatgg tgctaatgca
     3661 tgtccgtagt tacttacgtg cgtatattca ttatgtgcga gttttgttgg agcagcaatc
     3721 atgttaaatg ttttgtctgt tgcttttgta tctttgactt gttgtgctcc gtctgctagt
     3781 ttgtctgtta attctgtgct gccgtctgtt aatttagtaa gtccatctcc taattggaag
     3841 gaaccattcg ctaatttgga agaaccatcg gcaattttgg aagagccgtc tgctagttgt
     3901 cctacgcctg aaactagttt tggtgagtta gctgatagtt ggtttagacc gcctactaat
     3961 tggcttgaac ctgcttgtag ttgattaacg ccacctgcaa gtgttggaac ttttgcagct
     4021 aattggtttg ttccgccttg taattctgtt gctcctgagc gtaatgcgcc ggaattgctt
     4081 gcaagttgat taccaccatc atttaactga cttagcccgt tttccatatt tgcactaccc
     4141 gcagcgagtt gtcctacgcc agaagttagg gttggcactt ggttgttaag ttgatttgtt
     4201 ccagcaacta atttggcatt cccagcttgt gctgatttga gtccagcagt tagttggttc
     4261 gcgccgccaa gtagagtttg actacctgag ccattaattg cttggtgaat actgttaaat
     4321 gcttcgtttg ttccaccgtg aactgcttga taaccagcgg aaattttcgc tacgccagtt
     4381 tgcaattctg ttacttgtgt ttgaattgcc gctaaatcaa gacctgataa gccgctttgt
     4441 agttgttcta ctgttgctac ttgtgtagcg gatttttgtg tttctttatc taaatcggct
     4501 tgaatagcat caataatttt ttgtttatct tctgcactca cgccagctgt cgcattaatt
     4561 tttgatttaa ttgcttcagc atcgaagttc gcattagatt taataaatgt taagccattt
     4621 tgtaggtcgc ttaaactttt ttgtagtgca gcgagttgtt ttgcaagtgc tgcatcttcc
     4681 ccgttgacac ttttatttaa ttgatcaatt ccttgttgta aatcgttcat gccttgtttc
     4741 aattgggcaa ttttgccttg tttatcagtt aaattaccgt ctaattcttt aagtcctgct
     4801 gaaagtttgt tacttccatc gactagtgaa tctaagccag ttgctaagct tttttggccg
     4861 ttatttagtt gtgttatgcc cgatgctaga gttggtacac tgccattcat cttatttaat
     4921 ccatctgaaa gtgcagtaga accagtgtaa gcttggttaa ttccgcctgc tagtgtatct
     4981 acaccagatg tataggtaga aactccgcta gctaatttcg ttgccccgcc gtcaagcgct
     5041 gctacaccgt cttttagtgg tcctactcca gctgcaagtg tcgaaacacc atcatttaat
     5101 ttatccccac cagcggccgc agtgtttaca ccatctgtgt aagttttcaa gccaacttct
     5161 aacgtattag cgccatcttt gaacgttaaa gagctatctg cgagcgtttt taaattagta
     5221 gaaatcgttt tattaccttc ttgtgatttc acaaggccat ctttaatttt tccagagcca
     5281 tctgcagctt gggcgaaccc ttcaccagac tctttaattt tatcaaaaat tgcttccgcg
     5341 tatgattttg ttacttcagc ggaaacctcg cttttcagtt gtttggctcc ttgttcactc
     5401 acgacttgac ctaaatagtt cagcgagccg tttgttttat aggataattc catttttttc
     5461 ggatctttat ctaaaacgga tgctgcattt ttagagaaat cttttggaat cgtgacaatc
     5521 atataatatt tgccatcttt taagccttgt tccgcatctt ctttggaaag aaaattccaa
     5581 tcaagttctt tgttgctttt cagttttgtg actaactgat caccaacatc cattgtttgg
     5641 ccgttataat caaccggttt atcattgtta actaccgcta ctggtaaatc ccctgttttg
     5701 ccgtacggat cccagacgga ttttaagaaa aagcttgcat ataaaagtgg aataaacaga
     5761 ataactacaa atgataaaag tagtattttg tttttaaata atttcttcca ctcatttttt
     5821 accatatcca ttttattacc gcacttcttt cttttaaaga tttattacgc ttcgttccaa
     5881 tctatgatag tggttcgttc tttcccaata acttgctcta ctaaaacaga taatttttgt
     5941 gagtataaat aattagcgta ttctttatca gcgtttctaa aagcacttgt aatggtgtga
     6001 ataccggact ctgcaaattc atgatagtca gagaaaacag tgtggattaa gtcggaatct
     6061 gggtatgtat cgattttccc ttccactgct tctacaatat ccagcaaatt aatttcttca
     6121 gggtctttag caagcgtgaa accaccgtta ttacccgaaa ctgaattaat cagcccgcta
     6181 acgactagct tcctcaaaat tttactaata taagacggcg acgaatcacg caaacggtga
     6241 tgaatagtta cggaagaaat gggaacatct accttctggg tgtacaacat cgtcataata
     6301 caaaatacct gatccatact tttgctcaac ttcataataa aaatcctccc tcttcccatt
     6361 attacctttc aatatcctta atggacattt aacatctata tacaatacac ccattttttt
     6421 taaagtgcaa gagtttttta ctaaaaatgg aaaaaatttt aatgaatgcg tttgccgtga
     6481 ataaaacaac ctcaagtact gtctcaaaaa ttttccttag ccaagaaaaa aactggaata
     6541 attttcgaaa acaaacgtgc taatcttata catgttccaa caaacaatga cttaggaggt
     6601 gcttttctcg tgttaactga tgatgttcca aaaaaatcac atttaccatt aattaagcat
     6661 cattctaatt acttatagct tcgtttagtt gtattttcgc aaacaaaaaa ttgggaggta
     6721 ctacacaatg tctaaacaag caaagtcttt aaccttattc ggatttttcg ccattacggc
     6781 ttcgatggtt atgacagttt atgaatatcc aacatttgcc acttccggct ttcatctcgt
     6841 atttttcttg ctacttggcg gatttttatg gttcttacct gtcgctttat gtgcagcaga
     6901 aatggcgaca gttgatggct ggcaagaagg cggtattttt tcttgggtgg gaaatacact
     6961 cggggaacgt tttggttttg ccgcaatctt ctttcagtgg tttcaaataa cggtcggatt
     7021 cgtgacaatg atttacttta ttcttggcgc gctatcgtat gtatttgatt ttcccgcgct
     7081 cgaatcgaac ccttttatta aatttatcgg tgttttaatc attttctggg gacttacttt
     7141 ttctcaacta ggtggtacga aaaacacggc taaaatcgca aaatttggtt ttattatcgg
     7201 tattctcatc ccagcaatca ttttatttat cctaggtatt gcttatgttg ctggcggaaa
     7261 tccccttcat gtcgcttttt ccaaagaggc gtttatcccg gatttctcaa aagcttcaac
     7321 attagtcatc ttcgtgtcat ttatactcgc ttacatgggt gttgaagctt ccgcgagcca
     7381 cgtaaatgaa atgaccaatc caaaacgcga ttatccacta gcgatgatta tgctcgttat
     7441 tttagcgatc gcactgaata caatcggcgg cctaaccatt tccgctgtgt tacctttaaa
     7501 agatttatcc cttagctccg gtgtcgtcca aacattccaa gcgctaattc tgcactttgg
     7561 ttccggctta ggatgggcag taaaactgat tgccatcatg attgcacttg gcgtcatggg
     7621 tgaagtcagt gcctgggtag tcggcccctc acgcggaatg tatactgcag cagaacaagg
     7681 cttacttcca gaaaaaatga aaaaagtaaa taaacacggt gtccctgttc cacttattat
     7741 ggttcaaggc gtcgtcgtta ccatttgggc agctattctc acattcggcg gcggcggaaa
     7801 taatttatca ttcctaactg ccatttcctt aaccgtagtc atttatttag tcggctattt
     7861 actctttttc atcggctact tagtacttat tttcaaaaaa tcaagcttaa aacgcaccta
     7921 tcaaatccct ggtggcaaaa ttgttaaagt gattgtagcg ctaatcggct tagtaacatc
     7981 cgttttcgct ttatgtatct cttttgttcc accagcatcc atcgccgcaa aaagcgacac
     8041 gacatacatg gttatcttat caatcagctt tatcgtcacc gtactaattc catttatcat
     8101 ctacgctgtg cacgataaaa aagacatctc accgaaagat attacacatt tagaatcaag
     8161 cgacatcaat aaattcaccc acccaagagc tcgtggcgaa cacattatta accccgacga
     8221 aaaacatatt atgaatcaag acaaattata ggaggaaaaa atcatgttat atagtaaaga
     8281 aaataaagaa agttatttag aaccagtttt cggatcaagt gcagaggatc gtgatattcc
     8341 taaatacacc ctcggaaaag aaccactcga acctcggatt gcctatcgtt tagtaaaaga
     8401 cgaactttta gatgaaggtt ctgcccgtca aaacttagct actttttgcc aaacatatat
     8461 ggaagacgaa gcaaccaaat taatgtccga aacactagaa aaaaatgcaa tcgataaatc
     8521 tgagtaccca agaacagctg aactagaaaa tcgttgcgtc aatattatcg ctgacttatg
     8581 gcatgcacct aagaaccaaa aattcatggg aacttccaca atcggctcta gtgaagcgtg
     8641 tatgctgggc ggaatggcaa tgaaatttgc ttggagaaaa cgtgcggaaa aacttggctt
     8701 agatatttat gcgcaaaaac caaacctcgt tatctcctct ggctaccaag tgtgctggga
     8761 aaaattctgt gtctactggg atatcgatat gcgcgttgtt ccaatggata aagaccacat
     8821 gcaactgaat accgaccaag tccttgatta cgtcgacgaa tatacaatcg gcgttgtcgg
     8881 catcctcggc atcacttaca caggccgcta cgatgacatc tacgcactta acgaaaaatt
     8941 agaagaatac aatagcaaaa cagattataa agtctacatt cacgttgacg cagctagtgg
     9001 tggcttcttc acaccatttg tcgaacccga tatcatctgg gacttccgct tgaaaaacgt
     9061 tatctccatt aatacttctg gtcacaaata cggcctcgtt tatcctggta tcggttgggt
     9121 cctttggaaa gatgaaagct acctaccaga agaacttatt tttaaagtca gctaccttgg
     9181 cggagaaatg ccaaccatgc aaatcaattt ctcccgcagt gcgagccaca tcatcggtca
     9241 atactacaat ttcttacgct acggcttcga aggctaccgc accattcatc aaaaaacaag
     9301 cgatgtagca caataccttg cccatgcagt cgaacaaacc ggctactttg acatttataa
     9361 cgacggctcc catttaccaa tcgtctgcta taaattaaaa gacgacgcta acgtaaaatg
     9421 gacattatat gatttagcgg accgcctcca aatgcgcggc tggcaagttc ccgcataccc
     9481 actaccaaaa aacttagaaa acatcatcat ccaacgttac gtctgccgcg ctgacctcgg
     9541 tttcaacatg gcagaagaat tcatccaaga tttccaagcc tctattcaag aactaaacaa
     9601 cgctcacatc ctcttccatg atacccaaca atccggcgtc cacggcttca cacattaata
     9661 aaaaggctag cctctcaaat aggctagcct tttttcatgt tcttttattc taagcgactg
     9721 aatcgccctt tctacatcta caagatctct gtcaaaaaaa gccaaagaaa tcggaataat
     9781 catcccatct accgcttcct tcaattccat ttcacagttc ggatggcaaa gcacaatcgt
     9841 tggctcactt gactccgtta aaacctggtt caactcctcc actgaattaa acatcgtctc
     9901 atgcaccgtc accttccgcc ccagctcctg ctccacctga aacttacacg actcgaaatt
     9961 aattaaatta aaggaaaaaa tacaaatttg caccggattg ttccatttat aaatcagtgg
    10021 atacaaatga atcgtcaaat aattaatgtg cgaatcaatt aataatactc gatattcact
    10081 agcctcattc cagcgctcca aaacattttt cacaaccata taaagtggct catacttttt
    10141 atccagtaat cgctcattac tcggaataag tccctgcaaa ttaaacaacg tcttcttcaa
    10201 aaagtaacaa agtgccgccc gaaaaagcga atgattaaca acctccggac caaaatattc
    10261 ctcaaataaa tcaatcaaaa cttgtaaatc cgcatttttc attatcaact cattaaactg
    10321 ctccaactcc acctttttca tggaagcatc aatgatacta aaattagtcg aataataaat
    10381 cagcattaaa tacaagtaat cattatatga aaattcctga ccaagctctt tttcaagtgt
    10441 ttccttacta cttttccgaa ccatagcaag aaagcttgaa gactcaatat atttttgaca
    10501 ctgttcatcc aatataattg cactagtcgg aatatccctc ttaaacgcca tcgaaatcag
    10561 cgaccgaaaa tacgcatgac cttccgcatt atgcgccaac gtatcaatat taatccgcaa
    10621 attcaacgtc gccataaagt catcaatcat ttgcttctcc tcatccaaaa gtggataaat
    10681 aagcacacca tattctgctt gaagaagcgc aatcaaatac cgaacccggt actccttccc
    10741 agtaattcga ttattatcaa gtgtcaaatc aatttctcga agaaacgcct ctaccttgtg
    10801 cttcaaccga tacgcatgcg aatgagaaat aaaatacgta tccataaaat ctgtgaattt
    10861 gcgctcctcc acattcgtaa caaaaaacgc cacacatttc aaaaacatcg agttatcata
    10921 taacttatac aaaactttcc gttccgtcgc cccattttgc aaccgacatt ggtataccca
    10981 attatccaca cattctttca tctgaataac aatcaagcca tccaattcct cattcaacgc
    11041 atgaatatcc gaccttaccg tcacccgaga agtctccata tattccgcaa tttcatctaa
    11101 attcgtatgt ttattcttta gtagaaaatc acaaatcaaa cattttctct taatatcctt
    11161 ttcgatataa tttgtaagca taactatcct ctccgtgaaa gattaataca caacaatttt
    11221 cgccttctta acat
//
LOCUS       DASDXX010000082        11176 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.082, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000082 DASDXX010000000
VERSION     DASDXX010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11176
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.082"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(105..2051)
                     /locus_tag="U0280_001642"
     CDS             complement(105..2051)
                     /locus_tag="U0280_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA lysidine(34) synthetase
                     TilS/hypoxanthine phosphoribosyltransferase HprT"
                     /protein_id="HEM2271592.1"
                     /translation="MDDTDKRVHKYIEKHDLIRSDDKLLVAVSGGPDSLALLHFLWNS
                     NLVPKEAISVAHINHHLRENAANEQNVVEAFCESQGIPFYIEEVDVKSRAESLQKGIE
                     ETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILMRLVRGSASIGWSGIQPKREL
                     KGGQAIRPFLPITKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQLLPFLKQENPA
                     VYSHFERFSEETSEDFQFLEALASDLLKKNLIKNGKRTTLLLTNFKNEANPLQRRAIH
                     LLLRYLYNEDASFITVNHIYQIIQMIQSDNPSSSIDLPNKLVANRAYDKLHFQFGERE
                     APSEFYHQLELNDRIELDNKASIRLKLKSSVVQTNGLNGMLLDAEEITLPLIVRNRVN
                     GDRMTMKGQAGSKKLKDIFIDAKIPRQERDKLPVITDYTGKILWVPGVKKSAYDREFS
                     RSKKQYIIRYTRNIGGNESMHNDIQKVLISEDELQEKIRELGRELTTEYEGRNPLVVG
                     VLKGATPFMTDLLKRVDTYLEMDFMDVSSYGNGTVSSGEVKIIKDLNASVEGRDVLVI
                     EDIIDSGRTLSYLVDLIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVPNEFVVGY
                     GLDYAERYRNLPYIGILKPEIYSE"
     gene            complement(2158..2586)
                     /locus_tag="U0280_001643"
     CDS             complement(2158..2586)
                     /locus_tag="U0280_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein S1"
                     /protein_id="HEM2271593.1"
                     /translation="MSIEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVK
                     DINDILTVGDEVTVKVMNIGDDGKIGLSIRKAVDRPDRPEKSYDRKPKYSKKPAGNYV
                     KPAESFEDIMSKFLKDSDERLTTIKRQTESKRGGRGAKRG"
     gene            complement(2737..3123)
                     /locus_tag="U0280_001644"
     CDS             complement(2737..3123)
                     /locus_tag="U0280_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEM2271594.1"
                     /translation="MKKAKSKVARIENRYIKDTATMEKTRSRRRIALFRRLAFMAIIF
                     AVVGGLLTITYTKQVLTLKEKKEKQVQVDKKMVAMKDEQDSLNEQIKKLHNDDYIAKL
                     ARSEYYLSKDGEIIFNIPEENSKQKE"
     gene            complement(3352..3630)
                     /locus_tag="U0280_001645"
     CDS             complement(3352..3630)
                     /locus_tag="U0280_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEM2271595.1"
                     /translation="MATTMRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTN
                     VKSGDELVIRFGPKIVTAKIERLEENAKKEQATEMYTIIKEERTDESR"
     gene            complement(3654..5243)
                     /locus_tag="U0280_001646"
     CDS             complement(3654..5243)
                     /locus_tag="U0280_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM2271596.1"
                     /translation="MPERSMKRLMKGAAWLTAASLISKILSAVYRVPFQNMVGDVGFY
                     IFQQVYPIYGIAMTLALGGFPVVISKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFA
                     FLFLFANPIAIMMGDPALSELIRVISFVFLLMPQLAFMRGFFQGEGDMIPTAISQTVE
                     QIIRVAIILIGAGLALHFNFDLYDAGSMAMSGAFFGGVSGIFILRHFYNKKVRLGEGI
                     QPAVFTNKEEKVGIGRTFLRQSVAICVVSSMLILFQLVDSFQVYRLMSDSGIPDFIAK
                     SLKGVYDRGQPILQLGLVISTGLALALVPMITAARVQDQQKELKRSVLLAIKITLILA
                     GAETIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLIIMLSSILQGFGKITVPA
                     VGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTM
                     LFRLIAALALMAVFPCLFEWLAPLNTRLGSAFQAIVSALVGGGIFLVFSLRYKLLGPK
                     DFVFLPFGSKLLALSKLVARK"
     gene            complement(5274..8813)
                     /gene="mfd"
                     /locus_tag="U0280_001647"
     CDS             complement(5274..8813)
                     /gene="mfd"
                     /locus_tag="U0280_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEM2271597.1"
                     /translation="MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASV
                     VEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQ
                     RVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTM
                     GYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRV
                     EEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRS
                     GVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETL
                     SRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQ
                     MNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESAILKKESDVPKYGMVQ
                     FVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVV
                     HVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRL
                     NKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQ
                     ETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPT
                     TILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSK
                     DVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLS
                     VIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAM
                     VPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADR
                     MGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMR
                     DLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADA
                     YIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKV
                     HALEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITI
                     NVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN"
     gene            complement(8927..9487)
                     /locus_tag="U0280_001648"
     CDS             complement(8927..9487)
                     /locus_tag="U0280_001648"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEM2271598.1"
                     /translation="MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNG
                     MTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRL
                     RQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAA
                     IQKSADAIEDFAQTPFIEVMNKYNQK"
     gene            complement(9594..10178)
                     /locus_tag="U0280_001649"
     CDS             complement(9594..10178)
                     /locus_tag="U0280_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271599.1"
                     /translation="MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWC
                     RLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGE
                     MASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEK
                     YVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA"
     gene            complement(10268..10891)
                     /locus_tag="U0280_001650"
     CDS             complement(10268..10891)
                     /locus_tag="U0280_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEM2271600.1"
                     /translation="MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVD
                     SLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVET
                     DVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLP
                     ENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE"
BASE COUNT         3057 a         2411 c         1961 g         3747 t
ORIGIN      
        1 gattgcccac tattttgcat gtttgacatc aattttttgt tttcgttttc tgaaaagcta
       61 tctattacat tttaacaaaa tattgttctg tttgttaatt aatttcactc gctgtatatt
      121 tctggtttta aaataccaat atatggtaaa ttgcggtaac gttctgcata atccaaacca
      181 tatccaacga cgaattcatt tggtacgaca aagcctacat aatccgcttc aatttctaca
      241 tttcgtccag ctggtttatc aagtaaagta accaacttaa ctgattttgc tttacggtat
      301 ttgattaggt ctactagata actaagtgta cgtccgctat caatgatatc ttcaattaca
      361 agtacatcgc gaccttctac tgacgcatta aggtctttaa tgattttcac ttcacccgat
      421 gatacagtac catttccata actggatacg tccatgaagt ccatttctaa gtatgtgtct
      481 actcttttaa gtaaatcagt cataaaagga gttgctcctt ttaacacccc aactactaat
      541 gggtttcgtc cttcatattc tgttgttaac tcacgaccta gttcacgaat tttctcttgt
      601 aattcgtcct ccgatatcag cactttctga atatcattat gcatgctctc gtttcctcct
      661 atatttcgag tgtacctaat aatgtattgc tttttgctac gactaaattc tcggtcatat
      721 gcagacttct tcacaccggg aacccaaagg attttcccag tatagtctgt tatcacaggg
      781 agcttgtcgc gttcttgcct tggtattttg gcatcgatga aaatatcttt aagtttctta
      841 cttcctgctt gccctttcat cgtcatcctg tcgccgttca cacggtttcg aacaatcaaa
      901 ggaagtgtta tctcttcagc atccagtagc attccattta gcccatttgt ttgaacaacg
      961 gaacttttta actttaaacg gatacttgct ttattatcta attcaatgcg gtcattcagt
     1021 tctagttgat gataaaactc ggaaggagct tctctttctc caaattgaaa atgaagttta
     1081 tcgtatgctc tgtttgcaac gagtttattt ggtaagtcaa tcgaactaga tggattgtcg
     1141 ctttgaatca tttggataat ctgatatatg tgatttaccg ttataaaact ggcatcttca
     1201 ttgtacagat atctcaatag taaatgaatt gcgcggcgtt gtaaaggatt cgcttcattt
     1261 ttaaagttag taagtaaaag tgttgtccgt ttgccgtttt tgatgaggtt tttcttcaat
     1321 aaatcactcg caagtgcctc caaaaattgg aagtcttcgc ttgtttcttc tgaaaatctt
     1381 tcgaagtgcg aatagacagc tggattttct tgctttaaaa acggtaaaag ttgcgctctg
     1441 taacgatttc ttgtgtattc ttgactagta tttgattcat cgatttcgta tgccaattcg
     1501 tgtttctggg cgtaatcaat aatttctgct tttgtaattg gtaaaaaagg acggattgct
     1561 tgtcctcctt ttaactcgcg ttttggttgg atgcctgacc agccgatact agcacttccg
     1621 cgaactagtc gcattaagat tgtctcgatt tggtcatctg catggtgtgc gagcgctagt
     1681 ttgttgatct ttttctcagc cattactttc tcaaagaaat catacctgac aatgcgcgct
     1741 gtttcctcga tacctttttg caaactctca gctcgacttt ttacgtctac ttcttctatg
     1801 taaaaaggaa tgccctggct ctcgcaaaaa gcttcgacga cgttttgttc attcgccgca
     1861 ttttccctta agtggtgatt tatatgtgcg acggaaattg cttcttttgg gactaaattt
     1921 gaattccata aaaaatgcag taacgccaaa gaatccggac cgccagaaac tgccacaagc
     1981 aatttatcat cggatcggat taaatcatgt ttctcgatat acttatgtac tcgtttatcg
     2041 gtgtcatcca ttcaagaaaa ccttccttcg aaattcggct ctcacatttt ttattaaaaa
     2101 gtgcaccgta ttaatgatcc aatacggtgc atctacttta caattaattt tagcgtatta
     2161 gccgcgtttt gctcctcggc cgccacgttt agattctgtt tggcgtttga tagtagtgag
     2221 tctttcatca ctatctttca agaatttaga cattatatct tcaaagctct cggctggttt
     2281 cacatagttc ccagcaggtt ttttgctgta tttcggctta cgatcgtaac ttttctctgg
     2341 gcggtccgga cgatctactg ctttacgaat ggacagacca atcttaccat catcaccaat
     2401 attcattact ttaacagtaa cttcatcccc tacagttaag atgtcattaa tgtctttaac
     2461 atagttatct gctacctcac taatatggac taaacctgtt ttgccacctt ccagctccac
     2521 aaatgctcca aaattagtaa tcccagtaac tttcccttgt aacttgttgc ctacttcgat
     2581 cgacataaaa aaatgcgtcc tccttaaaat atcactctat tgcttaatta tagctataat
     2641 aaaaagagtg tcaaacagtc aaacttacaa actccaaaaa tactcaacta tattttccct
     2701 ttgatttacc atggagaatg acggctcggc tctgacttac tctttttgtt tcgaattctc
     2761 ttcaggaata ttaaaaataa tttctccgtc tttggacaag taatattcac ttcttgctaa
     2821 tttagctatg taatcatcat tgtgaagttt cttgatttgc tcatttagcg agtcttgttc
     2881 gtccttcatt gcaaccattt tcttatccac ttgcacttgc ttttcttttt tctctttgag
     2941 tgtcaacact tgtttagtgt atgtgatggt taataaccca cccaccacag caaagataat
     3001 agccataaaa gcaagtctac ggaacagggc aatgcggcga cgactacgag ttttttccat
     3061 tgttgcagta tcttttatgt agcgattttc tattctcgcc acttttgatt tggctttttt
     3121 catacatcgt ccctcccatg ttcttatttg ctaattgtct atgattttcg gtagagaaaa
     3181 aaacgtttct tgcttaaaat gatatcaata aatccggcat ttgtctattg gaatccgcta
     3241 attttatgat atttttcttg actttttgac aaaaaattgt ttaccgattt ttatgaccaa
     3301 taaaaaatcg tttgaaatcg gctaaatagt gccatttcaa acgatttttc tttatctact
     3361 ttcgtctgtg cgctcttctt taataatcgt atacatttca gttgcttgtt cttttttcgc
     3421 attttcttct aggcgttcga tttttgctgt aacgatttta ggaccaaagc gaataactag
     3481 ttcatctcca gattttacat tggtacctgg tttcgccgtc actccattta ccgcaatgcg
     3541 acctttttct gcgacttctt ttgctactgt acgtctttta attagtcgag atacttttaa
     3601 atatttatct aatcgcatgg ttgtagccat tttattcacc tactttatat taattatttc
     3661 cgtgcaacca gcttactaag cgctagtaat ttggagccaa acggaaggaa aacaaaatct
     3721 tttggaccga gtaatttata tcttagtgaa aaaacaagga aaatcccgcc gccaactaac
     3781 gcactaacaa ttgcttggaa cgcactaccg agtcttgtat tgagtggagc taaccattca
     3841 aataggcacg ggaatacagc cattaacgct aaagcggcaa ttagccggaa caacattgtt
     3901 ttttcaacga aaggcacgcg gattgtttgt tttagtgata cgtaacaaat gagtagaatc
     3961 acaagtaagc caacacatgt tgaaacggat gcaccaactg ttgccagtct cggaataaga
     4021 atgcctcctg ttacccattt tacaataagt ccaattccaa cgccaactgc aggtacagta
     4081 attttcccga aaccttgtaa aatactgctt aacatgatga ttagtgagct taggaaaaca
     4141 gctggcataa ataattgtaa aacgaatgta ccgtctggcg tttggaaaag catttggttt
     4201 aacggacgca taataactat gagtccaatt gtttctgcac ctgccaaaat taatgtaatc
     4261 ttaatcgcta ataagacgga gcgttttagt tctttttgtt gatcttgaac tcttgcggca
     4321 gtaatcattg ggacaagcgc gagcgcaagt ccagttgaga tgactaaacc taattgcaag
     4381 attggctgtc cgcggtcgta tacccctttt agcgacttag cgatgaaatc cggaatccct
     4441 gagtcactca ttaaacgata tacttggaaa gaatcaacta attggaataa aatcagcatg
     4501 gagctaacta cacaaattgc aacactttgt cgcaagaacg tgcggccaat acctactttt
     4561 tcttctttat ttgtaaatac tgctggttga atcccttccc cgagccttac ctttttatta
     4621 taaaaatgac gcaaaatgaa aatcccggaa accccaccga aaaaggcacc actcatcgcc
     4681 attgaacctg catcatataa atcaaaatta aaatgaagtg caaggccggc acctatcaaa
     4741 ataatagcta ctcgaataat ttgctccact gtttgcgaga ttgcggtcgg aatcatgtca
     4801 ccttctcctt ggaaaaagcc acgcataaac gcaagctgtg gcataagtaa aaacacgaaa
     4861 ctgatgaccc gaattaattc agataatgcc gggtctccca tcatgatagc aatcgggttg
     4921 gcaaatagga ataaaaaggc gaaaatcaca atacttacaa ttcggagcat ccgtgagact
     4981 gcgcgcataa ttatttgttg tcgtcttaca tcgccttctg cctccgctaa cattttagaa
     5041 ataacaactg ggaatccacc gagtgcgagg gtcattgcaa ttccgtatat cggatatact
     5101 tgttggaaaa tataaaaccc tacatccccc accatatttt gaaagggtac tcggtaaact
     5161 gcgctaagta ttttagaaat aagagaggcc gcggttagcc aagccgctcc tttcattagt
     5221 cgcttcatgg aacgttctgg cactccgcca cctccttcct tcttaataac ttatcaattt
     5281 tctgcagatg ctctttcttt catggctccg cgaagttttt cagccaaact tttgacttgg
     5341 tataaccatt cttttaaagg tttattttgg acgtttatcg tgatttttag ttgtgtacct
     5401 tccataccca caccgaccat tcggccaaat tcgccaatga tttgcatgac gatatctccg
     5461 cgaatgcctg ctgttccgct ttctgaaaat agcatggtaa ttttattttg ttcttgtttg
     5521 acggactcaa tgctaacttc gagtgcatgg actttgagtt ctgtcattgt gaatagatat
     5581 tctacttctt ctggatattc accaaaacgg tcaatcatat cgctttgtaa atcttcgagt
     5641 tcgcttaacg tttcaatatt gcggaagcgt ttgtacatct cgattttctg gcggccgtct
     5701 gtaatgtaat attccggaat ataggcgtct gcttggatat caatttcaac agggacaatt
     5761 tgtttttgtt cttcttttgg ctttttcgcc tcaattgctt ccttaagcat ttgcgagtag
     5821 agatcaaacc cgactgaatc gataaagcca tgttgttgcg ctccgaggat attaccggca
     5881 ccacgaatag ataagtcacg catcgctatt ttgaaacctg aacctaattc agtgaattct
     5941 ttaatagccg ataagcgttt ctccgcttcc tcacgcaata ttttatcttt ttgatacatg
     6001 aagtaagcgt aggcgattct gttccaacgc cctactcgtc cgcgcaactg ataaagttgt
     6061 gaaagaccca tccgatcagc atcttgaaca aagagtgtat taacgtttgg aatgtctacg
     6121 ccggtttcaa tgatggtcgt cgttacaagt acatcgaatt ccccttcaag gaaacttaaa
     6181 ataacagact ctaattccga ttcacccatc tgtccgtgcg cagtggcaac cctagcatca
     6241 ggaaccatcg cagaaatttc atctgctttt tgcgtaatgg attccactcg attatataga
     6301 taataaactt gtccgtcgcg cgctagttca cgttcaattg cttctcgaac taaaacgtta
     6361 ttctgctccg ccacatatgt ttgcactgga aaacggttcg ctggcggagt ttcgataaca
     6421 gagaggtcac gaacgccgag catggacatg tgtaaagttc ttggaattgg tgttgcagta
     6481 agtgttagta cgtctatttt ggaacgcatt tgtttgattt tttctttatg agttacgccg
     6541 aatcgttgtt cttcatcgac aattaataag cctaaatctt gatactccac atcttttgat
     6601 aataaacgat gggtaccaac aacaacgtcg actgtgccgt ttttcatacc ctttaatgtt
     6661 tctgtttgtt gtttctttgt tcggaaacgg cttaaaagtc cgatttctat tgggaaacct
     6721 tggaaccgtt ctttcattgt ttcaaaatgt tgttgcgcta aaatggtggt cggaactaag
     6781 aaggcgactt gcttgccatc cataattgct ttgaaagcag ctcgtaaggc cacttcggtc
     6841 tttccgtaac caacatctcc aaccaacaga cggtccatcg ggcgcggtcg ttccatatct
     6901 tttttgattt ctgaaatcga gcgcagttga tcttcggttt cttgatacgg gaaagcctct
     6961 tcaaattcgc gctgcatttc atcatccgca ctaaacgcat agcctttttc agcttcacgt
     7021 tcggcgtata gtttgattaa atcgtctgcg atatcttgga cggaagcttg tactttcttc
     7081 ttcactcgct tccattcagc gccaccaagt ttgtttaatc ttggtgattt accttctgca
     7141 ccaacatatt tttgaactaa atcaagttga tcgacgggga taaatagttt atcctctcct
     7201 tggtaaacaa gtagcaagta atctttatgc acaccgttga tatctagcgt ttccatgcca
     7261 acataacgag cgataccatg gttcacatga accacgtagt cacctacttt taattcagag
     7321 taactttgga ttcgttctgc attcgagagc ttttggcgct tcttcacttt tttgattttt
     7381 ttattgaaca gttcggtttc acttataatc gctactttag ctaatggaag ttcaaaacca
     7441 ttctggaacg ttccgatgac aaactgaacc attccatatt tcggcacatc cgattctttt
     7501 ttcaaaatcg cactttccat atcgtagtca gttaaagttt gttgcatttt ttcggcgcgc
     7561 tcaaggtttg gggctaaaat aacaacggca taattattct tatgccaact ttctagctcg
     7621 gttttcaaca cattcatttg gccatgaaat tgctgcattt gtttatagac gatgttagtt
     7681 gttttcgaga cgcgcatgct cgccatttgt ttttggaaaa gggataagta tattttcggc
     7741 gagtgatttg cttctaatag ctttttgaaa gaatgactta cttgcacgtc gcgaaccgtt
     7801 tccattcgac ttaatgtttc tgtttgccac tccgcttctt cccgctccaa gctttcttcc
     7861 gtttctaaaa tccgcccaaa ttcatcaagc aaaattgccg tgttttttgg aaaataatca
     7921 aaaagcgagg ctgggtcagg ataagccaga ccgatatatt taaagaacat gtctggtttc
     7981 acgccagaac gaagcatttc aagatcttct tctaaatttt caactagcgc ttgtttatcc
     8041 tcgttttctt tcaattcatt taaagtatgt gtcattttct tttctaagcg tttgacgata
     8101 tccggataat agctttgatc taaaatgatt tcagttgcag gcagtaggcg gaattcttcc
     8161 acgcgggttg tcgagcgctg cgtttccaca tcaaagaaac gaagagaatc tacttcggtg
     8221 tcaaaaagtt ctattctaat tggaaattct tctgtaattg gataaatatc aataatcccg
     8281 ccgcgaacac tgaattctcc cggcgtattt accattccgc tcattgtgta gcccattgtc
     8341 actagttttt ggcgtagtac atctggatca atttcttcgc cctctacaat ggatatgttg
     8401 aaatgtttcc aaagcgatac tggtggaagc atttttctga gaccagcaac tggcacaatg
     8461 actatccccg gttttccgga tagtaagaag tcgagcgctt ccacgcgttg accacgaagt
     8521 tccgggctag agatactcaa ctcagaagaa atcagttcat ctgctggata taaaaatagt
     8581 cgatcgacat ccattaaaga aagtaaatca tcatataatt tttgcgcatg gtataaattg
     8641 tgcgtaacaa atacaaccgg acgctttgac gcaccttcta ccacgcttgc aaataacgca
     8701 cgtgaagaac ctgtgagccc tgtgacaagt tgtgcttttt ctttttcatc cagcgcattt
     8761 aagaccgctc gaatatcttt ttgttcatat attaattgtt gtaatccttt caagggaaaa
     8821 cagctccttt ttgtcagaaa attcattcta tgcaacgcaa gagtaaatca cgcgtccgaa
     8881 gaaagaccga aatacgtggc aaaagattgc cacgcctcgt catcgtctat ttttgattgt
     8941 atttgttcat aacttctata aatggtgtct gtgcaaagtc ttcgatggcg tcagcgcttt
     9001 tttgaatcgc tgcgataata tcaggttgtt ctgctttagg aaaatctccc aagacataat
     9061 gaataacttc tccttttaaa ggacgactaa cgccaacacg aatgcgatta aactcttgtg
     9121 ttttaacgtg ttgaataatt gatttcattc cattatgtcc gccagcacta cctttttggc
     9181 gtaatctaat cttcccaact ggtaaatcga gatcatcata cacaatcacg acatcttcaa
     9241 ttggtatgtt gtagtaatcc attagcggac gaatgcattc acctgaagcg ttcataaaag
     9301 tgagtggttt cactaaaatc attttttcac cgccgacgat aatttcgcta gtcataccat
     9361 taaattttga tttcttccaa ggggtttgat gacgaaaact tagttcgtca actaccataa
     9421 aaccgacatt atgccgggta cgttcgtatt ttttgcccgg gtttccgagt cctgcgatta
     9481 gtttcataaa agcttctcct tacatgaacg aaaccacttc acgaatgaac tggtttttgt
     9541 ttcgatgttt ttttgattat aacatggatt tcacttggtt gaaagttttc caactaggct
     9601 tggtgttcgg caattttatt ttcgataatt tgccaggccg cttccttttc ctcttgaaaa
     9661 ttgactgttt tccaattttc cggcgttttt ccgacgtatt tttcaaaacc gaatttctga
     9721 tataaataga tagcttgata acttccggtt tgcgtagtta aatagacaaa actactttta
     9781 ttcaagccga gaattttgga taacaaggct ttcgcgatac cttttccacc gtgcgaatca
     9841 agcactgcaa cccagtgaat ccgactcgcc atctcgccga atgtatttcc atcccaaagc
     9901 atagccgttc caataatttc accatttggc gcctctacaa agacgcagcg cttggctaat
     9961 ttttcttttt catttccgaa ttccgtttca aaacgagcgc gaatactgtc cattgaaagc
    10021 acttgacccg tttctaattg caatctacac cagtcttctt ccaaaccatc tttataaaag
    10081 caaaaagaat atccctcagg taaatgaaac tccggataat ttgtagcatc gtgattgacc
    10141 ataatagcag aaatgtgcgg tactgactta tcaagcatat aaacgcctcc ttctcgaaac
    10201 cattataaca aaaaaaatgg aagatatcgc aaacaaaagc gaatcttcca tccttattta
    10261 ttcaaaatta ttcaacaggt tcttcatctt taccatgtac agcttctggt tcaggtgctt
    10321 ccgtagtcgt tggttcttct tccgcacgtg gagcagatac agttactact gtttcttctt
    10381 cctccgcttg cacgacatag tctttgtttt ccggaaggtc gttcgttgtt aaaacatcac
    10441 cgatttctaa tgaagaaatg tctaattcaa ttgtttctgg taatttttct ggtgttgctg
    10501 aaacttttac atcatggata atttgttgta gtacgccgcc agctttaact cccggtgcat
    10561 ccccaactaa taccacacga acatctgtct caacttcttc attcatatca accgctagta
    10621 aatcaacgtg tactaatacg tcttttaacg gatctacttg atattcatgt aataaaacgt
    10681 ttaatttctt gccgtccaca gtaactgaaa atacggcgtt acgaccattg tcacgaactg
    10741 ctttgattaa ttccaaagaa tcaacggaaa ctggaacatt ttccgatttg tagccataaa
    10801 taattccagg tacttttcct tcactacgca atctcgttac ttctgaatgt tgcgttgttt
    10861 ctcttttctg gacctctaat gttgttgcca taaaaaatca ctccactcat tcaattttgg
    10921 tacatctaca ttatatctac cctttagaaa aatagcaaaa caaagaaata gcctaatttt
    10981 gatttgtaag gtttataatt ctcaataaaa ggtaaacaga aaatagcggc tattcgctaa
    11041 tgtggacgct tccaaactgt actatagcgt tttcacaaat ttattataac aactttttta
    11101 aattcaggac gttcaacgct tcacaaatga aaaattcatg ttatactgta ctagtaaata
    11161 gattttttat aggagg
//
LOCUS       DASDXX010000083        11166 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.083, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000083 DASDXX010000000
VERSION     DASDXX010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11166
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.083"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            82..441
                     /locus_tag="U0280_001651"
     CDS             82..441
                     /locus_tag="U0280_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEM2271601.1"
                     /translation="MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDE
                     VKPDIVTLDITMPEMDGLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIV
                     KPFQADRVLEALEKAAK"
     gene            461..2317
                     /locus_tag="U0280_001652"
     CDS             461..2317
                     /locus_tag="U0280_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HEM2271602.1"
                     /translation="MTTNMLDLFIEEASEHLQALNDNLLQLEKDPTNGQLVSEIFRSA
                     HTFKGMSATMGFQQVADLTHAMENVLDEVRNNRLAVTEHLVDIIFTCTSHLETMVSDI
                     QHGGQGAADISKTVADLEALLHPEQETDLAVEKTYRIQIRIEEAAILKAVRAVMCLER
                     LAEMGIISETTPDREAIELEEFEQSFEVVLESAQTKEEIEAVVLDISEIEKVTVTEEV
                     EEVQVIEPIKKAAKQTTKRLENKTIRVQLEKIEKLMNVFEESVIERARIDEIAEKTNN
                     KELMEHLGRFSSISKEIQNGLLNMRMVPVDSVFNRFPKMVRTLAKELGKKIDLVIEGA
                     DTEVDKIVIDEIGDPLVHLIRNSVDHGAETVEVRRKNGKNETATINLKAFHSGNNVVI
                     EIADDGAGINKRKVLEKAIAKNVVTRAESTKMTDAEIFDLLFDSGFSTADQVSDLSGR
                     GVGLDVVRNTILKIGGKISVESSENAGSTFRIEIPLTLSIIQSMLVATSERRYAVPLA
                     NVAEAITINPADIQHVHGKDLINYRETIIEVLDLGECFHETPLNDTDELLLLVVKNAK
                     RTFGLIIKDIIGQREIVLKTLGGFFSESQIAFSGATILGDGRVVLILNLETF"
     gene            2330..2629
                     /locus_tag="U0280_001653"
     CDS             2330..2629
                     /locus_tag="U0280_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEM2271603.1"
                     /translation="MEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKK
                     EMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEID"
     gene            2648..3058
                     /locus_tag="U0280_001654"
     CDS             2648..3058
                     /locus_tag="U0280_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271604.1"
                     /translation="MKQEAYNAVKMKVDQEKTAILKELQLLLSKREKVVEKLAHEKEV
                     YYSRTKKERLQVAVLAGSMQLDAFSPSRIQQMEREIHQISQYIKSNEQILEQLEEKGK
                     QAKKMYDDTRKKWQQLENKREEQTLRDLKMVLLK"
     gene            3074..4120
                     /locus_tag="U0280_001655"
     CDS             3074..4120
                     /locus_tag="U0280_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEM2271605.1"
                     /translation="MLIPDNLLQPLVGKKQVEPKESLAEELVELPFISLLMENSPAPL
                     LKGEADNGEQATLPLKEIAQPLVSAKLLDDAPETKLQVAPLELKEVKETLAAIAKQAI
                     DQPKIENAPQAVETPVTNTPKEPTKNASREQQPPPELIIPTKESPKLAENVAKNQPVL
                     AKLPQEKEVVQLFKASIKEPVTAKEEVAVKKPAESSNIWHDTAKQLTPAAKPEVPVTL
                     KQLDKTITDQIEQLQKFQVKQNKAFFAIQPESLGKVEVLLKKMPDKIFVHIEYQEQTA
                     KQKLEQMAQDLHNRFRDRGVEVAVTMTEKQAPKENNQGSDGRHQGESKKEKERENPHQ
                     ERAKQEAFDLEEET"
     gene            4122..4544
                     /gene="flgD"
                     /locus_tag="U0280_001656"
     CDS             4122..4544
                     /gene="flgD"
                     /locus_tag="U0280_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464223.1"
                     /note="acts as a scaffold for the assembly of hook
                     proteins onto the flagellar basal body rod; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HEM2271606.1"
                     /translation="MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDP
                     SSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLN
                     GEVISGKVESVQQTTNGVMLKLKDNDSLVPMTYVTEIN"
     gene            4564..5799
                     /gene="flgE"
                     /locus_tag="U0280_001657"
     CDS             4564..5799
                     /gene="flgE"
                     /locus_tag="U0280_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEM2271607.1"
                     /translation="MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDL
                     LYQNTMGSVAGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFI
                     AGDNAGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNS
                     AIPGEATKNGSLSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDASGNVS
                     YEYEIQMDGKALTPPVTGTLNYNAQGELTNPDALKNIQINSTVNGKQVNMGLNLSGLT
                     NYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLV
                     KMGNGEYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGN
                     TKVIRVADDVMKQIVNLIQ"
     gene            5813..6049
                     /locus_tag="U0280_001658"
     CDS             5813..6049
                     /locus_tag="U0280_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEM2271608.1"
                     /translation="MKINHTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVV
                     KITISGKCIGYGEILTKDGKMFVKITKLGEGSSS"
     gene            6070..7062
                     /gene="fliM"
                     /locus_tag="U0280_001659"
     CDS             6070..7062
                     /gene="fliM"
                     /locus_tag="U0280_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEM2271609.1"
                     /translation="MSDKLSQEQIDALLSQISEGKVVDESTEIGDFGRFHPYDFHKPE
                     KFGAEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSY
                     IFCIIDLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKLSERRLLSVFEELTLKSIL
                     EKFCEALKDSFKSVHPISPEIVNIETNPALLRVTSPNDMMALVSVDIKSEFWISTMRI
                     GVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELN
                     KLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVKFMRHTGRTEQER"
     gene            7065..8612
                     /locus_tag="U0280_001660"
     CDS             7065..8612
                     /locus_tag="U0280_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein"
                     /protein_id="HEM2271610.1"
                     /translation="MEQLLEKNITQMELDVIGEIANISFGSASTVLSDLLHQQVTIST
                     PKVEIVDLYNTKDIDIPHVVLEVNFHKGIEMRNLFVLQSEVAAAIADLMMMGDGNIDP
                     NEELSELHLSAVQEAMNQMMGHSATAMSNMFGEMIDITTPDIKVIALKEQLEDTNDQT
                     MIKVGFDLIIGDLITSNLMQLIPIDKGHELAKRLLGDAVPEPEPVKEEISLTAEELDV
                     FLEVCNIGIGSASTVLSKLLNRKVSLQIPTARVIDSKEFEFNERPCLVTSVEFVEGLR
                     SSNTFIISKNAALIMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEM
                     LGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAK
                     EMAQLMLGIQAKEVAEKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPV
                     TLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGI
                     QMTELVR"
     gene            8618..10021
                     /locus_tag="U0280_001661"
     CDS             8618..10021
                     /locus_tag="U0280_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271611.1"
                     /translation="MRKLGLMTILFWLCFSVQAFAADPEPPIISLEGEQHVFTSGEVI
                     SFHIENAADLKIILVNEHGQRKLLDEETYTVTDWDLDGSYQAEFYQADVPKPFVTVED
                     LFEVKQLEDVAKDETAPSLKTIEITHDEDVLLTSVLRVSADLDDAESGVKQATLVVHS
                     ESNESEIELIRNNYTGKFAAEIPLEKFQLGEKITFQLQLVDFAENEITVDLGNTVQLY
                     QPKAPLLSYDGNDITNVQKKIGQVGKQIELTLDKYTTEFPELETETGKIIPLKWQKTA
                     TEWKGSLTLPSELSGEIIHIQGMDQHLLVRATSEPFGEVQLVNNAILTGTILSDFTLI
                     SNLYIEVNGQKFSVERAGNRFTSAEITTTGKIVLHWTDWDGQIYSKQMNQEIKPVIAI
                     PGKEIIAPPPVIPNEKTQILTSPAPKPSVEAHENTPKKQVKKETSTKDNSSSIPFWIP
                     ALMIIGVIIFSGNRAMK"
     gene            10044..>11166
                     /locus_tag="U0280_001662"
     CDS             10044..>11166
                     /locus_tag="U0280_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271612.1"
                     /translation="MKIDGIQESAENRNQLERELIKQNPVVKEGTIKAQMNTEVAVPK
                     TPPVSFSFKELSSLQLNGTSAASLELYMKLMMNNAKKANDLIFYVMRAGIKNPTDSTK
                     WQTVRSEISSQLSTILMKQHNFEAYFSENPANQKLFLANQKIMNEISFLLKMLPTLTF
                     ETTGKYDFLRMMQIASGNMETGIQMMREFQGHIEHATRLDPIVDARQETNWMIKVLRE
                     FGNMFQSRHLLPYELQAENINIWKLGSEYLKLMNQLLPQIGAFPNGNIKIFHQQATKP
                     LTELFQELQRLADGQMTQGGIAVILDRMQGQLTRLAQLFQKMEIEAGFTDTERILGSV
                     DAEFASDMTKMMLLAQQEMSFFDLLVKDFRSVSKQPIFFM"
BASE COUNT         3965 a         2117 c         2425 g         2659 t
ORIGIN      
        1 ttgtcctatt tttattataa aatgatatta tgcgattttt ttaaaaaata tttataggta
       61 taggaatggg agttgtattt tatgttgaag ttgttgattg tcgacgatgc aatgttcatg
      121 cgtacgatga ttaagaatat cgtgaaagat agcgattttg aagtagttgc agaagcagaa
      181 aatggactgg aagcagtgaa aaagtatgat gaagtaaaac cggatatcgt gacactggat
      241 attacgatgc cagaaatgga tggcttagaa gcacttgcgc aaattatggc caaagatcca
      301 tcggcgaaag taattatgtg ctcggcgatg ggccaacaag gtatggttgt agacgccatt
      361 aaaaaaggtg ccaaagactt tatcgtaaaa cctttccaag cggaccgggt tttagaggcg
      421 ttagaaaaag cagctaagta gagaaatgga ggtggatagc atgactacaa atatgttaga
      481 cctgtttata gaagaagctt cagaacattt acaggcgcta aatgataatc tgttacagct
      541 tgagaaagac ccgacgaacg gtcagttagt aagtgaaatt ttccgttcag cacatacatt
      601 taaagggatg tccgcaacga tgggcttcca acaggtggct gatttaacgc atgcaatgga
      661 aaatgtacta gatgaggtac gcaataatcg attggctgta acagaacatt tggtagacat
      721 tatttttaca tgtacatctc atttggaaac aatggtttcg gatatccagc acggcggaca
      781 aggcgcggcg gatatttcga aaaccgtagc tgacttagag gcgcttttac atccagaaca
      841 agaaacagat ttagcggtag aaaaaacgta tcgcattcag attcgaattg aagaagcagc
      901 tattttgaaa gcagtacggg cggtaatgtg tttagagcga cttgcagaaa tggggattat
      961 ttcagaaaca acgccagaca gagaagcgat tgagctagaa gagtttgagc agtcattcga
     1021 agtagtccta gagtcggcgc aaacaaaaga agaaatcgaa gcggttgttc tagatatttc
     1081 tgaaatcgaa aaagtgactg tgacagaaga agtggaagaa gttcaggtta ttgaaccaat
     1141 caaaaaagcc gcaaaacaaa caaccaaacg attagaaaat aaaaccattc gtgtacaact
     1201 tgaaaaaatc gaaaagctaa tgaacgtttt tgaagaaagc gtcattgaac gggcgagaat
     1261 tgatgaaatc gcagaaaaaa cgaataacaa agaattgatg gaacacttag gacgattcag
     1321 ttccatctcc aaagaaattc aaaacggctt actaaatatg cgtatggtgc cagtggatag
     1381 tgtgttcaat cgctttccaa aaatggtgcg cacactagcc aaagaattag gtaagaaaat
     1441 cgacttagtg attgaaggcg cggatacgga agtcgacaaa atcgtcattg atgaaattgg
     1501 cgacccactt gttcacttaa tccgtaattc agtagaccac ggagctgaaa cagtcgaagt
     1561 aagacgtaaa aatgggaaaa atgaaaccgc cacaattaat ctaaaagctt tccatagtgg
     1621 gaacaatgtc gtgatcgaaa ttgcggatga cggtgcggga atcaataaac gcaaagtgtt
     1681 agaaaaagcg attgcgaaaa atgtcgttac aagagcagaa tcaaccaaaa tgacggacgc
     1741 ggaaattttt gatttattat ttgattcggg tttcagtacc gcggatcaag tatccgatct
     1801 ttctggccga ggcgtgggac tagatgttgt ccgtaatacg attctcaaaa tcggcggaaa
     1861 aatcagcgta gaatcaagtg aaaacgctgg ttcgacgttc cgaattgaga ttccgctgac
     1921 attatcgatc atccaatcga tgctcgttgc aacatcagaa cgtcgctatg ctgtaccgct
     1981 ggcaaacgtg gccgaagcca tcacaattaa tcctgcagac attcaacacg ttcacggcaa
     2041 agacttaatc aactaccgtg aaaccattat cgaagtactc gacttaggcg aatgcttcca
     2101 tgaaacacct ttgaatgaca cggatgaatt actattactc gtcgtgaaaa atgccaagcg
     2161 aacttttgga cttattatta aagatattat cggtcaacgg gaaatcgttt taaaaacact
     2221 tggtggcttt ttcagcgaaa gtcagattgc cttttctgga gcaacgattt taggcgatgg
     2281 tcgtgtcgta ttaattttaa atttagaaac attttaagga ggaaccatga tggaacaagt
     2341 atttcaagta gaacttcctg aatgggaacc gaaagaaccg agccaagaag gacgcgaaaa
     2401 aggctctatc cgccaagtag acaatattgg cgttaactta atcgtccgcc ttggaaaaaa
     2461 agaaatgcca gtaggggata tcgccgagct aagcattggc gatgtcctcg aagtggaaaa
     2521 gaaacctggc cacaaagtcg aaattttcct cgatgaaaag aaagtcggca tcggtgaagc
     2581 tattttgatg gacgagaact tcggaatcgt tatttcagaa atcgactaaa gaaagagggc
     2641 aagtgatttg aagcaagagg cttacaacgc agtgaagatg aaagtggacc aagagaaaac
     2701 ggccatttta aaggaattgc aattattact atccaaacgg gaaaaagtcg tagaaaaatt
     2761 agcgcacgaa aaagaagtct attactcaag aacgaaaaaa gaaagactcc aagtggcggt
     2821 attagccgga agcatgcaac tagatgcctt ctcgccgagc cgcattcaac aaatggagcg
     2881 agaaattcac caaattagcc agtacattaa aagcaatgaa caaatcttag agcaacttga
     2941 ggaaaaaggg aaacaggcca aaaaaatgta cgatgacaca cgaaaaaaat ggcaacagct
     3001 tgaaaataaa agagaagaac aaacattacg cgatttaaaa atggtgctat taaagtaaaa
     3061 gggaggaaaa cgcatgctaa tcccagataa tttgctacaa ccactcgtcg gaaaaaaaca
     3121 ggtcgaacca aaagaatcgt tagcagaaga attagtagaa ctgcctttta tttcactttt
     3181 aatggaaaat agccctgcgc cgctcttaaa gggagaagcg gataacggag aacaagctac
     3241 gctaccacta aaagaaatcg cccaaccact cgtttcagcc aagctactcg acgatgcacc
     3301 agaaacgaaa ctgcaagtag caccactcga actcaaagaa gtgaaagaaa cacttgcggc
     3361 aatcgccaaa caagcaattg atcaacccaa aatagaaaac gccccgcaag ctgtagaaac
     3421 tccagtaaca aatacaccga aagaacccac aaaaaatgcc agtagggagc aacaaccgcc
     3481 accagaactt atcataccta caaaagaatc acctaaacta gcagaaaacg tggccaaaaa
     3541 ccaaccagtc ctagccaaat tacctcaaga aaaagaagtc gtgcaacttt tcaaagcgag
     3601 cattaaagag ccagtaactg ccaaggaaga agttgccgtc aaaaagcccg cagaatccag
     3661 caatatttgg catgatacgg cgaaacaact cacaccagct gccaaacctg aagtcccagt
     3721 gacgttaaaa caacttgata aaaccatcac cgaccaaatc gaacagctac aaaaattcca
     3781 agtgaaacaa aataaagcct ttttcgccat ccagccggag tcactcggaa aagtcgaagt
     3841 tttacttaaa aaaatgcccg ataaaatatt tgtacatatc gaatatcagg aacaaacggc
     3901 gaaacaaaaa ctcgaacaga tggcgcaaga tttgcataat cgtttccgag atcgcggcgt
     3961 agaagttgcc gtgacaatga cagaaaaaca agcaccgaaa gagaataacc aaggctcgga
     4021 tggtcgacac caaggtgaat ctaaaaaaga aaaagaacgc gaaaatccac atcaggaaag
     4081 agctaaacaa gaagcatttg atttagagga ggagacgtaa tttggacgga attagtagtt
     4141 tatcaggagc cggtcaggat acaaataatg tagtaacatc cagcgtatcc aaaacccttg
     4201 gcaaagatga cttcatgaaa ctatttttaa caagtttaca ataccaagac ccatcgagcc
     4261 cgcttgatac gaatgaaatg atgtcgcaaa tggcgcaact ttccttaatg gaacaagttg
     4321 ccaatatgac cactgccgta gataagcttt ctgaacaagc gcaaaactcc gccttgcaat
     4381 ccgcggttaa tttcatcggt aaagatataa aaggtgtttc gctgaacggc gaagtaatta
     4441 gtggaaaagt cgaaagcgtt caacaaacga caaacggcgt catgctgaaa ttaaaagata
     4501 acgatagcct cgtgccaatg acatatgtaa cagaaattaa ttaaaaattt gggagtgtga
     4561 attatgaatc aaactatgta tacagctatt tctgggatga atgcgttcca acaagcatta
     4621 tcggtaacat caaataatat tgccaatgcc aacacgacag gatacaaaaa acaaagcgtc
     4681 gttttcaatg atttacttta ccaaaacaca atgggatctg ttgcaggcgg actttatgct
     4741 ggaacaaacc caatgagttt cggttccggt tcaaaaattg gagcgatttt aaccgattat
     4801 acagcgggtt ccccaacagc aacgggcaga aataaagatg cagcactaca aggtcgcggc
     4861 tttttcatcg cgggcgataa tgcagggggc aatatcgttt acacgcgtga cgggagcttc
     4921 gccgtttccg acaacaatta tttaactacc caacaaggga aatacgtaat gggttacgca
     4981 acagacaaaa atggcaacgt tttaaacggt aatttgcaac caattcaaat cccgctaaat
     5041 agcgcaattc caggagaagc aacaaaaaac ggtagcttaa gcggtaacat tccactagac
     5101 tggggcgaaa aagatacgat ttcttccgag ctttctgtat atgataatgc tggcggaaaa
     5161 cataaacttc aagtgaatat gaaagctgct acaccagatg cgagcggtaa tgtttcctac
     5221 gaatatgaaa ttcaaatgga cggaaaagca ttaactcctc cagtaacagg aacacttaat
     5281 tacaatgcgc agggcgaatt aacaaaccca gacgcactta aaaatatcca aatcaattcc
     5341 acagtaaacg gcaaacaagt caatatgggc ttaaacctaa gtggcttaac caactacgga
     5401 acaaaccaag tattctcacc aacttctgac ggtaaaggcg ctgcgactgt aaaagattat
     5461 gcagttaccg attctggcta tattgcagtg agttactcag atggtacagt tatcccagtt
     5521 gcccaacttg cggtggctac tttctccaat gaagacggct tagtcaaaat ggggaacggc
     5581 gaatatgttc caggattatc ttctggcgat gcagtatacg gcgttgctgg ccaaaatggc
     5641 gctggcggaa ttagtggctc ctcattagaa ggctcaaacg tagacttgtc ccgcgaattc
     5701 gttaacttaa tgacatacca aagtggtttc caagggaata caaaagttat tcgtgtggcg
     5761 gatgacgtga tgaaacaaat tgtgaacttg attcagtagg gagtttagct aaatgaaaat
     5821 taatcatact attccactca gaatcgactt cgagttagga cgtacgaaac agccagtcgg
     5881 tagtttgcta gatgtaaaaa aagggaccgt ttttcggtta gaagattcaa cagccaatgt
     5941 ggtcaaaatt acgatttctg gcaaatgcat cggttacggt gagattttga caaaagacgg
     6001 caagatgttt gtcaaaataa cgaaattagg agagggaagt tcttcatgag agctagggag
     6061 tgacaaaaaa tgagcgataa attaagtcaa gaacaaattg acgccctgct ttcccaaata
     6121 agtgaaggta aggtagttga tgaaagtacg gaaattggcg actttgggcg ctttcatccc
     6181 tatgactttc ataaaccaga gaaatttggt gcagaacacc tcgaaagctt aaagacgatt
     6241 gcatccgctt ttacgaaaaa aagcatggag tttgtttccc agcgtatccg gattccaatt
     6301 cataccgaag caacccttgc agatcaagtt tcctttgcga gtggttatat cgaaacaatg
     6361 ccgaacgata gctacatttt ctgcattatc gacctgggta atccggagct cggtcaaatt
     6421 attatcgaac tcgatttagc ctatatcatt tatattcatg aatgcttatc tggcgggaat
     6481 ccaaaacgaa aattgagcga gcgcagactt ttatctgttt ttgaagagct gacgttgaaa
     6541 tctattttag aaaaattctg cgaagcactc aaagacagtt ttaaatcagt acatccaatc
     6601 tcaccagaaa tcgttaatat cgaaactaac ccagcacttc tacgtgtcac atcaccgaac
     6661 gacatgatgg cgcttgtcag tgttgatatt aaatcagagt tttggattag tacaatgcgc
     6721 attggcgtgc cgtttttctc ggtggaagag attatgaata agctggaaaa cgtcgtggaa
     6781 tatacgtttg ataagcggcg gaattttgat gcggaagtcg agcaagaatt gcatcaagtc
     6841 gagaaagaag cgtgcatacg tgtaggtgaa attaaaacaa cgtggaaaga actgaataag
     6901 cttgaagtag gcgacgtgct tctgacagaa actcatatac gtgacacact caaaggctac
     6961 gtcactgaaa aatggaaatt tgaatgttat atgggaaaaa gtggtaacca aaaagccgtt
     7021 aaatttatgc gtcatacagg gcggacagag caggagaggt agaagtggag caattactag
     7081 agaaaaatat cacgcaaatg gaactagatg tgataggaga aatcgccaat atttcgtttg
     7141 gctcagcttc tacggtctta tctgatttac tacaccaaca agtcaccatt tcgacgccaa
     7201 aagttgagat tgttgattta tataatacga aagacattga tattccacat gtcgtgttag
     7261 aagtgaattt tcacaaagga atcgaaatgc ggaatttatt tgttctgcaa tcagaagtgg
     7321 ctgcggctat cgcggactta atgatgatgg gtgatggaaa cattgatccg aatgaagaac
     7381 tttcagaact tcatctaagc gccgtacaag aagcgatgaa ccaaatgatg ggacattccg
     7441 ccactgcgat gagcaatatg tttggcgaaa tgattgatat tacgacacca gacattaaag
     7501 taatcgcgct aaaagaacaa ttagaagata cgaacgacca aacaatgata aaagtcggct
     7561 ttgacttaat tatcggcgac ttgatcacat cgaatttaat gcaactcatc cctattgata
     7621 aagggcatga acttgcaaaa agattacttg gcgacgcagt tccagagcca gaaccagtaa
     7681 aagaagaaat cagcttaacg gccgaagagt tagatgtctt tttagaagta tgtaatatcg
     7741 gcatcggttc agcttcaacc gttctatcca aattgcttaa ccgtaaagtt tccttacaaa
     7801 tcccaactgc acgcgtaatt gatagcaaag agttcgagtt taatgaacgt ccttgcttag
     7861 tgacgagtgt ggaatttgtc gaagggctgc gctcaagcaa cacatttatc attagcaaaa
     7921 atgccgcgct aattatggca gatttaatga tgatgggaga cggtttggtt caagaagatg
     7981 cagaactgac ggaacttgaa gtcagcgcag tgcaagaatt aatgaaccag atgatgggct
     8041 tctcagcgac agcaatgtca gaaatgctcg gaacaaaaat cgatattagc ccacctacaa
     8101 tggaattttg taatttcggc gatacgatga ttcaaaaaaa cattgaagaa ggaaaaactg
     8161 tcgaagtcat cttcccgcta gaagtagaag gactattaaa aacgccaatg taccaaattt
     8221 ttaatccagc agcagcaaaa gaaatggcgc aattgatgct tgggattcag gcgaaagaag
     8281 tcgcagagaa agaagcgacg actccagcag aaataatcga accagaaaaa ctagctgaac
     8341 cagtgcacca agcagttatc gaagaaaaag aaacactttc cgaaatggaa caaattttgg
     8401 aagatattcc cgtaacgctt gaagtggtat tcggaacagc aaaagtaaaa ctcgaaaaat
     8461 ttatctcttg gtgtgaaaaa gatgtgatta tcctaaaaga gagtatgaac gaaccacttg
     8521 tcttagcgct aaatggcgtg acgattggta aaggaatttt agttcgcgtg gatgatcatt
     8581 ttggtataca aatgacggag ttagtaaggt gaaaaatgtg cggaaacttg gactgatgac
     8641 aattttattt tggctgtgtt tttcggttca agcatttgca gcagatcctg aacccccgat
     8701 aatatcgctt gaaggcgaac agcatgtttt tacatctggt gaagtgattt cgtttcatat
     8761 tgaaaatgcg gctgacttga aaattattct ggtgaatgaa catggacaga gaaagcttct
     8821 agacgaggaa acgtatacgg tgacggattg ggatttggac gggagttacc aagctgaatt
     8881 ttatcaagca gatgtgccga aaccatttgt tactgtggaa gatttatttg aagtgaaaca
     8941 gcttgaggac gttgcgaaag atgagacggc gccgagtttg aaaacgatag aaattacgca
     9001 cgatgaagat gtcttgttaa cgagcgtgct acgtgtatca gctgatttag atgacgcgga
     9061 atctggcgtg aaacaagcga ctttagttgt tcatagcgaa tcgaatgaat cagaaatcga
     9121 actcattcgc aacaactata cagggaagtt tgctgcagaa atacctttag aaaaattcca
     9181 actgggtgaa aaaatcactt ttcaactgca actagttgat tttgccgaga atgaaatcac
     9241 agtagactta ggaaacactg tccaactata tcaaccaaaa gcaccccttt taagttacga
     9301 cggtaatgac atcacgaacg tgcagaaaaa aatcggccaa gtcggcaagc aaatcgagct
     9361 aactctcgac aaatatacaa ctgaatttcc agaactagaa acagagaccg gcaaaataat
     9421 cccactaaaa tggcaaaaaa cggcaactga atggaaggga agtctaactt taccgagcga
     9481 attatccggt gaaatcattc atattcaagg aatggatcaa cacctgctcg ttcgcgccac
     9541 tagtgaacct tttggcgagg ttcagttagt caacaatgcc attttaacag gaaccattct
     9601 ttcggatttc acacttattt caaatcttta tattgaagta aacggtcaaa aattttccgt
     9661 cgaacgagcg ggcaaccgtt tcacaagtgc agaaataacc accacaggca aaatagtgct
     9721 ccactggaca gactgggacg gccaaattta ttccaagcaa atgaatcaag aaatcaagcc
     9781 tgtaatcgca atcccaggta aagaaataat cgcaccacca ccagtaatac cgaacgaaaa
     9841 aacgcagata ctaacatcac cagctcctaa gccatctgtt gaggcacatg aaaatacccc
     9901 caaaaagcag gtgaaaaagg aaacctcaac taaagacaac tcaagcagta tcccgttttg
     9961 gattccggcg ctcatgatta ttggcgttat tattttttcg ggtaatagag caatgaaata
    10021 aaagcagaag tgaggtggac ggaatgaaaa tagatggcat tcaagaatct gcagaaaatc
    10081 gtaatcaact agaacgggaa ctcattaaac aaaatccagt tgtaaaagaa ggtacgataa
    10141 aagcacaaat gaatacagaa gtagccgtac cgaaaacacc gccagtatca ttctctttta
    10201 aagaattaag tagcttacaa ctaaacggaa caagcgcagc aagtttagaa ttatatatga
    10261 aattaatgat gaacaatgct aaaaaagcga atgatttaat cttttacgtg atgcgggcgg
    10321 gaatcaaaaa tccaactgat tctactaaat ggcaaacagt cagaagcgag attagtagcc
    10381 aattaagtac aattctaatg aaacaacata attttgaagc gtacttttct gaaaatcccg
    10441 cgaatcaaaa attattttta gccaatcaaa aaattatgaa cgaaatatcc tttttgctaa
    10501 aaatgttgcc aaccttaact tttgaaacaa caggaaaata cgacttcttg cgcatgatgc
    10561 aaatagcttc tggcaatatg gagactggaa tccaaatgat gcgcgaattc caggggcata
    10621 tcgaacatgc gacaagacta gacccgattg ttgacgccag acaagaaacg aactggatga
    10681 ttaaagtgtt acgcgaattt ggcaatatgt tccaatcgcg ccacttatta ccatatgaat
    10741 tacaggcaga aaacatcaat atttggaagt tgggtagcga atacttaaaa ctaatgaacc
    10801 aacttttacc gcaaattggc gcatttccaa atgggaatat caaaattttt caccaacaag
    10861 cgaccaagcc attaacggaa cttttccaag aactgcaacg cttggcagac ggacaaatga
    10921 cgcaaggtgg gatcgccgtt attttagacc ggatgcaagg ccaacttaca cgacttgcac
    10981 aactgtttca aaaaatggaa atcgaagcag gtttcaccga tacagaacga attttaggta
    11041 gtgtggacgc cgaattcgct agtgatatga caaaaatgat gctactcgca caacaagaaa
    11101 tgtcattttt tgatttatta gtaaaagatt tccgaagtgt ttctaaacaa ccaatatttt
    11161 tcatga
//
LOCUS       DASDXX010000084        11105 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.084, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000084 DASDXX010000000
VERSION     DASDXX010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11105)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11105)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11105
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.084"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..234)
                     /locus_tag="U0280_001663"
     CDS             complement(<1..234)
                     /locus_tag="U0280_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEM2271613.1"
                     /translation="MTKTLTNKLAKKDHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVS
                     AIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEA"
     gene            complement(227..1429)
                     /gene="trpB"
                     /locus_tag="U0280_001664"
     CDS             complement(227..1429)
                     /gene="trpB"
                     /locus_tag="U0280_001664"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEM2271614.1"
                     /translation="MTYQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAF
                     QKELNYYLKEYVGRETPLYFAEQLTAHAGGAKIYLKREDLNHTGAHKINNTIGQALLA
                     RQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKV
                     VSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARK
                     QHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATIS
                     KGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDD
                     EAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPEESMVVCLSGRGDKDVNQLKE
                     RLEGQIND"
     gene            complement(1432..2040)
                     /locus_tag="U0280_001665"
     CDS             complement(1432..2040)
                     /locus_tag="U0280_001665"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEM2271615.1"
                     /translation="MIVKICGLKKAVDVAAAVDNGADMIGFVFAKSKRQVTVEKAHEL
                     AKNIPADVKKVGVFVNPTEEELTAAIKGVPLDIVQLHGQEPAKQANRTDAKVIKAFPV
                     KDGKLPTNINDYPNAYILLDAPAEEYEGGSGKTFDWDKINRDMLTKNKLIIAGGLNAQ
                     NVQEAIKRFEPYAVDISSGVETNGEKDPEKIKCFIKTAKGVE"
     gene            complement(2037..2795)
                     /gene="trpC"
                     /locus_tag="U0280_001666"
     CDS             complement(2037..2795)
                     /gene="trpC"
                     /locus_tag="U0280_001666"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEM2271616.1"
                     /translation="MTFLEEILAQKAVEVADMPLEKVAEKRKTYSFYEFLKANTSTMQ
                     LIAEVKRASPSKGEINIGVNPVLQAKSYQAAGAGMISVLTDPVFFKGSIEDLREVAKN
                     VEIPVLCKDFIISEKQLIRARNAGATVVLLIISALTEEMLIALFEQALALDLEVLVEV
                     HDQKELAVAQKIGAKLIGVNNRNLHTFEVDIAVSERLASDFSSDACFISESGFRTAED
                     VARVSQKYNAVLVGEALMREATPEAAAKSLKVTR"
     gene            complement(2792..3811)
                     /gene="trpD"
                     /locus_tag="U0280_001667"
     CDS             complement(2792..3811)
                     /gene="trpD"
                     /locus_tag="U0280_001667"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEM2271617.1"
                     /translation="MEILLQKVYDQENLSKEEMTMIATEIFEGRLSKTKIAAFLMALK
                     VKGETAEEMAGIAQAMQRVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAG
                     IPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKY
                     VMDVRKELGTPTIFNLIGPLTNPVHLETQLMGIYRRDLLEQTAEVLGQLGRKRAVVLN
                     GAGFMDEASLAGENHYALYENGEVHLYTLRPEDVGLTSYPLEAITGGEAKENAAILRS
                     VLDGEPGAYLDTVLLNAGFGLFANGKVTTVQEGVDLARDLIRSGLAKQKLADLITYQK
                     EVLAK"
     gene            complement(3783..4388)
                     /locus_tag="U0280_001668"
     CDS             complement(3783..4388)
                     /locus_tag="U0280_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEM2271618.1"
                     /translation="MILLIDNYDSFTFNLEQYLAEFSEVVVKRNDATDLMEMAALADG
                     IVLSPGPGKPSDAGLLEEVVAKFAKEKPLLGICLGHQAIGEVFGGDVKRAAKIRHGKV
                     STMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPQVLEVLAVATDDAEVMAMKVKDYP
                     VYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI"
     gene            complement(4385..5749)
                     /gene="trpE"
                     /locus_tag="U0280_001669"
     CDS             complement(4385..5749)
                     /gene="trpE"
                     /locus_tag="U0280_001669"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HEM2271619.1"
                     /translation="MRKTKKIDADTLTAILAFQRLSGTGKSLLEGAAKDAEAGRYSII
                     AINPVHEIKVYQHDYYIDGIHQVVADPLKEIELFIEKAKEDEADLPLDSGAIGYVGYD
                     VIALYENLGEIPVETRDMPDIRFYVYESFVIMDHQAEELILVQDNCYSGRSEAELDKA
                     LELMFTELTTPKKEEHKAVHVPKMTYKSNYTKEEYMGLVKKAKTYIQEGDFFQIVLSQ
                     RLEADFTVTPFDYYRKLRLLNPSPYLYFIDFGDTVLIGSSPESLIKTKGRTVITNPIA
                     GTRRRGATKQEDELLASELLSDEKELAEHRMLVDLGRNDIGKIAETGSVHVPVYLTIE
                     RYRFLMHLVSVVEGTLKPGLTAMDALRSTLPAGTVSGAPKIRAMERIYEWENVKRGPY
                     AGAVGYLTKNGDSDFALSIRTMVLHNGKAYVQAGAGIVYDSDPESEYLETLQKAKALL
                     EVGE"
     misc_binding    complement(5817..6043)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     misc_binding    complement(6092..6333)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            6835..9435
                     /gene="lap"
                     /locus_tag="U0280_001670"
     CDS             6835..9435
                     /gene="lap"
                     /locus_tag="U0280_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion-mediating acetaldehyde/alcohol
                     dehydrogenase LAP"
                     /protein_id="HEM2271620.1"
                     /translation="MAIKENAAQEVLEVQKVIDRLADNGQKALKAFESYNQEQVDNIV
                     HAMALAGLDQHMPLAKLAVEETGRGLYEDKCIKNIFATEYIWNNIKNNKTVGVINEDV
                     QTGVIEIAEPVGVVAGVTPVTNPTSTTLFKAIIAIKTRNPIIFAFHPSAQRCSSAAAK
                     VVYDAAIAAGAPEHCIQWVEKPSLEATKQLMNHDKVALVLATGGAGMVKSAYSTGKPA
                     LGVGPGNVPAYIDKTAKIKRSVNDIILSKSFDQGMICASEQAVIVDKEVAKEVKAEME
                     ANKCYFVKGAEFKKLESYVINPEKGTLNPDVVGKSPAWIANQAGFKVPEDTKILVAEI
                     KGVGDKYPLSHEKLSPVLAFIEAANQAEAFDRCEEMLVYGGLGHSAVIHSTDKEVQKA
                     FGIRMKACRIIVNAPSAQGGIGDIYNGFIPSLTLGCGSYGKNSVSQNVSATNLLNVKR
                     IADRRNNMQWFKLPPKIFFEKYSTQYLQKMEGVERVFIVTDPGMVQFKYVDVVIEHLK
                     KRGNDVAYQVFADVEPDPSDVTVYKGAELMKDFKPDTIIALGGGSAMDAAKGMWLFYE
                     HPEASFFGLKQKFLDIRKRTFKYPKLGGKAKFVAIPTTSGTGSEVTPFAVITDKENNI
                     KYPLADYELTPDVAIVDAQYVTTVPAHITADTGMDVLTHAIESYVSVMASDYTRGLSI
                     RAIELVFENLRESVLTGDPDAREKMHNASALAGMAFANAFLGINHSLAHKIGPEFHIP
                     HGRANAILMPHVIRYNALKPKKHALFPRYESFRADEDYARISRIIGFPAATTEEGVKS
                     LVDEIIKLGKDVGIDMSLKGQNVAKKDLDAVVDTLADRAFMDQCTTANPKQPLVSELK
                     EIYLEAYKGV"
     gene            9558..9986
                     /locus_tag="U0280_001671"
     CDS             9558..9986
                     /locus_tag="U0280_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM2271621.1"
                     /translation="MIQATVPYFTFDGEATEALDFYKKVFQAEITQMRYFHELEGFSG
                     DKKQGERILHARLTKDEKDLFYFSDTLEGETDAGNRLALAVNFSSEADFVHAFVLLSK
                     TGTIEIPIQNTFWDAKYAKVIDHYSIDWHLNLENESTTKV"
     gene            10070..10990
                     /locus_tag="U0280_001672"
     CDS             10070..10990
                     /locus_tag="U0280_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271622.1"
                     /translation="MTETVLKLEHVTKKIGQKNIVHDISFDIHKGEVFGLLGPNGAGK
                     TTIIRSIVGLIRRSEGTVFINGKNVDTEYKAAISEVGAIIENPEFYMYMSGWANLKQF
                     ARMSQKNITDEHVREIVELVKLTGAINQKVKTYSLGMRQRLGVAQALIHSPALLILDE
                     PTNGLDPQGMAEFRTLIRDLATNGTSVLISSHLLSEIQQITDRFAIINKGVLTHIEKM
                     SDLIENHVAAYKLKVSDPEATKTVLATLPVKLVAQNEDLFKIEVAHEDVHLIARALIQ
                     ANIDLLEMVPLQASLEERFLELTKGGGAEV"
     gene            10987..>11105
                     /locus_tag="U0280_001673"
     CDS             10987..>11105
                     /locus_tag="U0280_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2271623.1"
                     /translation="MIALVKNEFTKLFSRKSSWIMQIVLFVAVLALALLMFFV"
BASE COUNT         3380 a         2444 c         1905 g         3376 t
ORIGIN      
        1 ggcttctaaa ctcacttgct cctttaaagc acgtaaccca gcaagttgaa taatcggacc
       61 gtcggcaacc ggatcagaaa aaggaatacc aatttcaatc gcgcttacac cagatttttc
      121 gagaaacaat aactgttctt ctaaattatc taagccacca tcgccaccca taatgtaagt
      181 aactacggca gcatgatctt ttttcgctag tttattcgtt aatgttttag tcatttattt
      241 gtccctccaa gcgttccttt agttgattaa catctttatc tccgcgacca gataaacaaa
      301 cgaccatact ttcttctgga cgcatttggc ttgcaagttt gactgcataa ctaatcgcgt
      361 gcgagctttc gagtgcagga atgattcctt ccgtacgaca taaaagttga aatgcttcaa
      421 cggcttcatc atcggtaaca gaatggtacg ctgcacgacc taaatcacgg aaaaagctat
      481 gctccggacc aatacctgga taatctaagc cagctgaaat cgaaaatgct tccaaaattt
      541 gtccattctc atcttgtaaa acgtccatca tcgctccgtg taaaatccct atttctcctt
      601 tggaaatagt cgctgcatgg aattcagttt ctaaaccgtg tcccgctgct tccacaccgt
      661 gcatttgaac agaaacatca tctacaaatg gataaaataa ccccatcgca ttactcccgc
      721 ctccaacaca agcaacaatt gcatcaggaa gcttaccttc tttttccaag tgttgtttgc
      781 gtgcttctat tcctatcaca ctttggtaat cacgaacaat ttctggaaat ggatgcggtc
      841 caagaacgga tcccataatg taatgcgtgt cttccacatt agcaacccag aatctgagcg
      901 cctcatttac tgcgtctttt aatgttctgc ttcctgcttt cacgctcact acttttgcac
      961 caagaagttc cattctaaac acattgagtg attggcgttt cacatcttct tctcccataa
     1021 aaatagtaca ttccatatta aaaagtgctg caacagttgc agtcgccacc ccgtgttgtc
     1081 ctgcgccagt ttctgccact actttttgtt tacccatttg acgtgcgagt aaggcttgcc
     1141 caatagtatt attgatttta tgtgcgccag tatgatttaa atcttcgcgt tttaaataaa
     1201 tttttgctcc gcccgcatgt gctgttaatt gttcagcaaa ataaagtggt gtttctcggc
     1261 ccacatattc ttttaaataa tagtttaatt ctttttgaaa agcaggatct gttttggaag
     1321 cccggtacgc ctcgtctaat tctttcactg ctttcattaa tgtttctggt acaaatctgc
     1381 cgccaaattt tccgtaaaag ccattttcgt caggtgcttg ataagtcatt attattccac
     1441 tccttttgct gttttaatga agcatttaat tttctccgga tctttttctc cgtttgtttc
     1501 tacgccagag gaaatatcta ctgcatatgg ttcaaagcgt ttaatggctt cttgtacatt
     1561 ctgagcattt aatccgccag ctataattaa tttgtttttt gtaagcatgt ctctatttat
     1621 tttatcccaa tcaaatgttt ttccgctgcc gccttcatat tcctctgctg gtgcatcgag
     1681 taaaatataa gcgtttggat agtcatttat attggtagga agtttcccgt ctttcacagg
     1741 aaaagctttg attacttttg catctgtgcg atttgcttgt tttgcgggtt cttgtccgtg
     1801 aagttgaaca atgtctaatg gcacaccttt gattgctgcc gttaactctt cttcagtagg
     1861 attaacgaat accccgactt ttttgacgtc agcgggaata tttttggcta attcatgtgc
     1921 cttttccacc gtaacttgac gtttactttt tgcgaaaacg aagccaatca tatctgcgcc
     1981 attatcgacc gcagccgcta catctactgc ttttttcaat ccacaaattt ttacaatcat
     2041 cgtgtcacct tcaaactttt cgccgctgct tctggagtcg cttctcgcat tagcgcttct
     2101 ccaacaagca ctgcattata tttttgacta acacgagcca catcttcagc tgttcgaaaa
     2161 cctgattcac ttatgaaaca agcatccgac gaaaaatcgc tcgccagtct ttcacttact
     2221 gcaatatcca cttcaaatgt atgcaaatta cggttgttca caccaatgag tttagctcca
     2281 attttttgag caacagctaa ttctttctgg tcatgtactt ccactaacac ttccaaatca
     2341 agcgccagag cttgttcaaa cagagcaatt agcatctctt ctgtaagtgc cgaaataatt
     2401 agcaatacaa ccgttgctcc cgcatttcga gcacgaatca attgtttttc actaataata
     2461 aaatctttac aaagtacagg aatttcgaca tttttcgcta cttctcgcaa atcttcaatc
     2521 gagcctttga aaaaaacagg atctgtcaaa acagaaatca ttcccgcacc cgcagcttga
     2581 taagacttgg cttgcagaac cggattcacg cctatattga tttccccttt agaaggagag
     2641 gcgcgtttta cttctgcaat aagttgcatc gtgctggtat ttgcttttaa aaattcataa
     2701 aacgaataag ttttccgttt ttcggctact ttttctaagg gcatgtctgc aacttctact
     2761 gctttttgcg ctaaaatttc ttctaaaaat gtcattttgc tagcacctct ttttgataag
     2821 taattaaatc tgccaatttt tgtttggcta aaccacttct aattaaatct cttgctaaat
     2881 ccacgccttc ttgtaccgtt gtcactttgc catttgcaaa taaaccaaat ccggcattta
     2941 aaagcactgt atctaagtaa gctcctggtt ctccgtcaag cacactacgc aaaattgctg
     3001 cattttcttt agcttctccg cctgtaattg cttcgagagg atagctagtt aaaccaacat
     3061 cttccggacg cagtgtatat aagtgaactt caccattttc atataacgca taatgatttt
     3121 ctccagccag agaagcttca tccataaaac cagcgccatt taaaacaact gcgcgttttc
     3181 gtccgagctg gccgagtact tccgctgttt gctctaacaa atcacgacga taaattccca
     3241 ttaattgcgt ttctaaatgg accggatttg tgagtgggcc aatcaaatta aatatcgttg
     3301 gcgttccaag ttcttttcga acatccataa cgtacttcat attcgggtga acatgtggcg
     3361 cgaacaaaaa ggcaattccg actttttcga gtaaataagt catatcttct ggtcgcatat
     3421 taatatcaat ccctaattcc tgacaaacat cagcactacc tgaacgacta gaaatacttc
     3481 tattcccatg tttcgcaacc ggaatccccg cagccgcaag aacaaaagcc gacgtagtac
     3541 taatattaaa actattggat ttatctccac ctgttccgca attatccatc gctgtcccgg
     3601 ctggaaaagc gacttgaata gccactcgtt gcatcgcctg cgcgattccc gccatttctt
     3661 ctgccgtttc tcctttcact ttgagcgcca ttaaaaaagc agctattttc gttttcgaaa
     3721 gtcgtccttc aaaaatttct gttgcgatca ttgtcatttc ttctttggat aaattttctt
     3781 ggtcatatac tttttgtagt aagatttcca ttttctcgcg ctccttccac tatatgaata
     3841 aagttttcca tcatttgttt tccatcattc gtaccaattg attcaggatg aaattgcaaa
     3901 ccgtaaaccg gataatcttt tactttcatt gccatcactt ccgcatcgtc cgtcgctact
     3961 gctaacactt ccaaaacttg tggcaacgtg tttttatcta ctattaaaga gtgataacgc
     4021 atcacaggca tttcttccgg taaattagca aagattgctc cagcggtttg ccgcatagta
     4081 gaaactttcc cgtggcggat tttcgccgct ctttttacgt ctccgccgaa tacctcacca
     4141 atcgcctgat gacctaaaca aattccaagc aaaggctttt ctttcgcaaa ttttgcaact
     4201 acttcttcta aaagaccagc atcacttggt tttcctggtc ccggtgaaag aactatccca
     4261 tcagctaaag ccgccatttc cattaaatca gtcgcatcat tccgtttcac aaccacttca
     4321 ctaaattctg ctaaatactg ttctaaatta aatgtaaaag aatcgtaatt atcaattaat
     4381 agaatcattc tcccacctcc aaaagtgcct ttgctttttg taatgtttct aagtattcgc
     4441 tttctggatc ggaatcatag acaattcctg caccagcttg aacataagct tttccgttat
     4501 gaagtaccat tgttctaatc gaaagcgcga aatccgaatc accattttta gttaaataac
     4561 caaccgcacc agcatatggg ccacgtttta cattttccca ttcatagatt cgctccatgg
     4621 ctcttatttt cggtgctccg ctaactgtac cagccggaag cgtcgaccga agagcatcca
     4681 ttgcagtaag tccgggtttt aaggttcctt ctactactga aactaaatgc attaagaaac
     4741 ggtatctttc aatagtaagg taaacaggca catgcactga tcccgtttcg gcgattttcc
     4801 caatatcatt tcgtccaaga tctactaaca ttcggtgctc tgctaattct ttttcatccg
     4861 acaacaattc cgaagcgagt agttcgtctt cttgtttcgt tgccccgcgc cgtcttgttc
     4921 ctgcaatagg attcgtaatt accgtccgcc cttttgtttt gatcaaactt tctggggaag
     4981 atccaatcaa caccgtatcc ccaaaatcaa tgaaataaag ataaggagaa ggatttaata
     5041 aacgtaattt ccgataataa tcaaatggtg tcacggtgaa atctgcttct agtcgttgcg
     5101 agagaacaat ttgaaagaag tcaccctctt ggatataggt ttttgctttt ttcactaacc
     5161 ccatgtactc ctctttcgtg tagttactct tgtatgtcat tttgggaaca tggacagcct
     5221 tgtgctcttc ctttttcggc gttgtaagtt cagtaaacat taattcaagc gccttatcta
     5281 gttccgcctc acttcttccc gaatagcaat tatcttgcac taaaataagt tcttccgcct
     5341 gatgatccat aatcacaaaa ctttcatata cataaaaacg aatatctggc atatcccgag
     5401 tttctactgg aatttcgcct aaattctcat aaagcgcaat gacatcataa ccaacataac
     5461 caattgcacc tgaatcaagc ggtaaatctg cttcatcttc ttttgctttt tcgataaata
     5521 attcaatttc ttttaaagga tctgcgacaa cttgatgtat accgtcgata taataatcat
     5581 gttgatatac tttaatttca tggactggat taatggcaat aatcgaataa cgtccagcct
     5641 ccgcatcttt cgccgccccc tctagcaaac tttttcctgt acctgaaagt ctttgaaacg
     5701 ccagaatagc cgttagtgtg tcagcatcta tttttttcgt ttttctcatc ttaatcatcc
     5761 cttcttctct actaaaataa aaaaagtcct ctgaaaaagc gcaaaattat gctttttcag
     5821 aggacgagtt atcgcggtgc cacctcattt tagggaattc tccctatctc agtactgcaa
     5881 tatttgcagt cgctctataa cgggagcacc cgttcacccc tacttaattt caaggtatca
     5941 cgcacaaggc ccattcctaa ttcatctatt tattagctcc caccaaacgc taactctctt
     6001 taaaaatcga tgaaaaagta ctattcttgt ttcatgtttt cgttttataa aattaaaaaa
     6061 gggcctctct ccaagcctag caaatatact agacaaggac gagagacccg tggtaccacc
     6121 ttgattaact gtaaaaacag ttcacttaat ccatccaaat tccgaatggg tgccttgtgt
     6181 aacgataagg cctaatcgct gtatcctact aagaaaatcc tttcagatca gagctcagaa
     6241 gtccattcac atcatgtctg ctactgactt tcaccaaccg tcagctctct agaaactttc
     6301 atcatgctac ttactcttct tcaatgctat cattttttac ttgttttcat cttacataag
     6361 aaaatcacga aagtcaagaa aataaaacta ctttatacta aaaaggttcc aaaacgataa
     6421 ttaataaaca agtaagaaaa aagaactatc tccctataat atatttcacc ccagaaaaag
     6481 tatgctattt tctctattat aataaatatc acctccctta aaacacttat aaaatatagg
     6541 ttttcaaatg ataatcagct taaattccaa tgataaaaac actcatataa accatgccta
     6601 attaactaaa aaaagctttt ccgaaaggac ttttcaacca tctttgtcaa tttgtgaagt
     6661 ttttcacgtg aaacactgga caaactttta ttgatggatt atactaacgg tgtaatcaaa
     6721 taaaacaaaa gaatacggca aagcaacaag ctaaattttt ttggattatc agggacgtta
     6781 aaagtctact atggacattt taagtcccga acaaatatta ggaggttctg gaaaatggca
     6841 attaaagaaa atgcggccca agaagtatta gaagttcaaa aagtgattga cagattagca
     6901 gacaatggac aaaaagcatt gaaagcattt gaaagttaca atcaagaaca agtagacaat
     6961 atcgttcacg caatggcact tgccggactt gaccaacata tgccccttgc aaaattagca
     7021 gtagaagaaa ctggacgtgg attatacgaa gataaatgta ttaaaaacat cttcgcgaca
     7081 gaatatattt ggaacaacat taaaaacaac aaaacagtag gcgttattaa tgaagatgta
     7141 caaactggtg tgattgaaat tgctgaacca gttggagttg ttgccggggt tacacctgta
     7201 actaacccaa catccactac tcttttcaaa gcaattatcg ctatcaaaac acgtaaccca
     7261 atcatctttg ctttccatcc aagtgcacag cgttgttcat ctgcagcagc gaaagttgta
     7321 tacgatgcag caattgcagc tggagcacca gaacattgta ttcaatgggt agaaaaacct
     7381 tccctagaag caacgaaaca attaatgaat cacgataaag tagcacttgt acttgcaact
     7441 ggtggtgctg gaatggttaa atcagcatac tctactggta aacctgcact aggtgttgga
     7501 ccaggtaacg taccagctta cattgacaaa acagccaaaa ttaaacgttc tgttaatgac
     7561 attattcttt ctaaatcttt tgaccaaggt atgatttgtg cttctgaaca agcagtcatc
     7621 gtggacaaag aagtagctaa agaagtaaaa gcagaaatgg aagcaaacaa atgctacttc
     7681 gttaaaggcg ctgaattcaa aaaattagaa agctacgtaa tcaatcctga aaaaggaaca
     7741 cttaacccag atgtagttgg taaatcccct gcatggattg caaatcaagc tggcttcaaa
     7801 gttccagaag atacaaaaat ccttgtagct gaaattaaag gtgttggcga caaataccca
     7861 ctatctcacg aaaaattaag cccagttctt gcattcatcg aagctgctaa ccaagcagaa
     7921 gcattcgatc gttgtgaaga aatgttagta tacggaggac ttggacactc cgcagttatt
     7981 cactctacgg ataaagaagt tcaaaaagca tttggtattc gtatgaaagc ttgccgtatc
     8041 atcgtaaatg caccaagcgc acaaggcggt atcggtgaca tttataacgg cttcatccct
     8101 tccctaacac taggttgtgg atcttacggt aaaaactctg tatcacaaaa tgtaagtgcg
     8161 actaacttgc tgaacgttaa acgtatcgcg gatcggagaa ataatatgca atggttcaaa
     8221 cttccaccaa aaattttctt tgaaaaatat tccactcaat accttcaaaa aatggaaggc
     8281 gttgaacgcg tatttatcgt aactgaccca ggaatggttc aattcaaata cgtggatgtc
     8341 gtaatcgaac acctgaaaaa acgtggcaac gatgtagctt accaagtatt tgctgacgtt
     8401 gaaccagatc catctgacgt aacagtttac aaaggtgcag aactaatgaa agacttcaaa
     8461 cctgatacaa ttatcgctct tggtggtggt tctgcaatgg atgctgccaa aggtatgtgg
     8521 ttattctatg aacacccaga agcttcattc ttcggcttga aacaaaaatt cttagatatc
     8581 cgtaaacgta cattcaaata tcctaaactt ggtggaaaag cgaaattcgt tgcaattcca
     8641 acaacaagtg gtacaggttc tgaagtaact ccatttgcgg ttattacaga caaagaaaac
     8701 aacattaaat accctcttgc agactacgaa ttaactccag atgttgcgat tgtcgatgca
     8761 caatatgtaa ctactgttcc agcacacatt actgctgaca ctggtatgga cgttctaact
     8821 cacgcaattg aatcttatgt atccgtaatg gcaagcgatt atactcgtgg attatctatc
     8881 cgcgcaatcg aacttgtatt tgaaaactta cgtgaatctg ttcttactgg tgatccagat
     8941 gcgcgtgaaa aaatgcataa tgcttctgcc ctagctggta tggcgtttgc aaatgcgttc
     9001 ctaggaatta accacagctt ggcacacaaa attggacctg aattccacat tcctcacggt
     9061 cgtgcgaatg caatccttat gccacatgtt attcgttata acgcacttaa acctaaaaaa
     9121 catgcgttat tccctagata tgaaagcttc cgtgctgatg aagattatgc tcgtatctct
     9181 cgtattatcg gcttccctgc agcaactaca gaagaaggcg ttaaatcact tgtagatgaa
     9241 atcatcaaac ttggtaaaga cgttggtatc gacatgagtc ttaaaggaca aaatgttgct
     9301 aaaaaagatt tggatgcagt tgtagataca cttgcagatc gcgcattcat ggaccaatgt
     9361 actactgcca accctaaaca accacttgta agtgaactaa aagaaatcta cctagaagct
     9421 tacaaaggtg tttgaaacta gctaacttgt ccaccattaa tatataaagt tagaagaaag
     9481 cgcaagtcca tcccagggct tgcgctttcg ctttagtact aaaattagta taatggaaca
     9541 agaatggagt tgatttaatg atacaagcaa cggttcccta ctttactttt gacggggagg
     9601 ccacagaagc actagatttt tataaaaaag tgtttcaagc agaaattacg caaatgcgtt
     9661 attttcacga gctggaagga ttctcaggag ataaaaaaca aggagaacga atcctccatg
     9721 caagacttac gaaagacgag aaagatttat tttatttctc cgacacgctc gaaggcgaaa
     9781 cagacgcggg caatcgccta gcacttgcgg tgaattttag ttcggaagca gattttgtac
     9841 atgcctttgt cctactatcc aaaaccggca ccatcgaaat tccgattcaa aatacatttt
     9901 gggacgcaaa atacgcgaaa gtaatcgatc attacagcat agattggcac cttaacttag
     9961 aaaatgagtc tactactaaa gtatgatttt ttcccgtcct ctagccgaat gtaattagaa
    10021 ctaaaaaata gtacaatttt agtagtgaga gaaaaaaagg agtgagttca tgactgagac
    10081 agttttaaaa ttagaacatg tcacgaaaaa aatcggacaa aaaaatattg tccacgatat
    10141 cagctttgac atacataaag gagaagtatt tggtttactt ggcccaaacg gtgctggtaa
    10201 gacaactata atccgctcta tcgttggttt aattcgtcgc tcagaaggta ccgtttttat
    10261 taatggtaaa aatgtcgaca cagaatataa agcagcgatt tcagaagtag gtgctattat
    10321 tgaaaatcca gaattttata tgtatatgtc tggatgggca aacttaaagc aattcgcacg
    10381 tatgagtcaa aaaaacatta ctgacgaaca cgttcgtgaa atcgttgaac ttgtaaagct
    10441 tactggcgca attaatcaga aagtaaaaac atattctctc ggtatgcgtc aacgtttagg
    10501 tgttgcgcaa gctttaattc atagccctgc tttacttatc ttagatgaac caacaaacgg
    10561 acttgatcca caaggtatgg ccgaattcag aacgctgatt cgcgatttag cgacaaatgg
    10621 tacttctgtt ttaatttcta gccatttact tagcgaaatc caacaaatta cggatcgatt
    10681 tgcgattatt aacaaaggtg ttctaacgca catcgaaaaa atgagcgacc taattgaaaa
    10741 tcatgtcgct gcttataaac taaaagttag cgatcccgaa gcaactaaaa ccgttctcgc
    10801 tacactccca gtcaagcttg ttgctcaaaa tgaggatcta ttcaaaatcg aagtggctca
    10861 cgaagatgta catctaattg ctcgtgcgct tatccaagca aatattgatt tattagaaat
    10921 ggttccactt caagcctccc ttgaagaacg attcctcgaa ttaactaaag gtggaggtgc
    10981 agaagtatga tagcattagt aaaaaatgaa tttaccaaat tattttccag aaaatcaagt
    11041 tggattatgc aaatcgtctt atttgtagca gttttagctc ttgctcttct tatgtttttt
    11101 gttag
//
LOCUS       DASDXX010000085        11081 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.085, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000085 DASDXX010000000
VERSION     DASDXX010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11081
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.085"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..2049
                     /locus_tag="U0280_001674"
     CDS             <1..2049
                     /locus_tag="U0280_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEM2271624.1"
                     /translation="LRLGIVQIVQGDTYKRQLEETDNVTVSKNVPRGSIYDRNYNLLV
                     GNSAVKSITYTRSQQTQTAETLHVAQTLEKLITVEPEKLTDRDLKDYWILTHQTESLN
                     RLSAKEQALDSSKAYKIQVDKVTKEDIASLTSEDLKVATIYKKMTTGYAMTESVVKNK
                     DVTDEEIARVSENMDSLPGVDTTTDWNRYYTYDETLRSILGSVSTAKEGLPKDKAEYY
                     LSQGYSRNDRVGKSYLEAQYESVLAGSKSQSESVLDSKGNIIETVNKYEGSKGKDLVL
                     SVDVEFQKAVEEILKKNIKQGKQYAGSDLFDRAFVVAMDPYSGEVLALAGQKLNDKGE
                     FEDYSLGTFTTAYAMGSAVKGSTILGGIMDGAITNKTVFTDQPIVLKGTKPKSSWFNR
                     TGAGNRPLDPVGALEISSNSYMYQVAMKMGGANYVPNGPLRAPLSTFDDMRYYYNQFG
                     LGVKTGIDLPGEQTGYKGDDQTIGKILDFAIGQYDSYTPLQMAQYVSTIANGGSRIAP
                     SMVKEIRNPSTNGDSVGTLATANEPKVLNKIGVSESDIKTVQQGFYEVTHGSTGTART
                     VFTSSDYDVAGKTGTADAFYDGPKEGNKMASVWNTTFVGYAPVEKPEIAISVVVPWIY
                     RPYGTDQKTNMKISKEVFDKYFELKKERSESKKDTSKVEQPINNKEAAAKAQSEQTEN
                     "
     gene            2247..3290
                     /locus_tag="U0280_001675"
     CDS             2247..3290
                     /locus_tag="U0280_001675"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEM2271625.1"
                     /translation="MTKSYHVAVVGATGAVGTQMIELLEEAATFKIKQVSFLSSIRSA
                     GKKLSFRGEEVTIQEATPESFEGVDIALFSAGGSVSKALAKEAVKRGAIVIDNTSAYR
                     MDPTVPLVVPEVNEKALFSHKGIIANPNCSTIQMVAALEPIREAFGLNRIIVSTYQAV
                     SGSGVSAIQELKDGSRAVLDNKEFTPQIMPVKGDKKHYPIAFNALPQIDVFTENDYTY
                     EEMKMINETKKIMEDNTIKVSATCVRIPVVSGHSESVYIEVDKEGITAKEIQNELKNA
                     PGIVLEDDPANQVYPQAVQAAGKKEVFVGRIRADIDDPKGFHMWIVSDNLLKGAAWNS
                     IQIAESLVKLAII"
     gene            3302..4513
                     /gene="dapG"
                     /locus_tag="U0280_001676"
     CDS             3302..4513
                     /gene="dapG"
                     /locus_tag="U0280_001676"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM2271626.1"
                     /translation="MKIIVQKFGGTSVQNEKSRLMAFNHIKQVLKEGYKVVVVVSAIG
                     RYGDPYATDTLLELIGAKNTKLTAREQDTLLSVGETISASVFTNMLKEANIKAEAFSG
                     GQAGIITSDDHLNAKITEVDTARLKDALTNLDVAVVAGFQGITANGDISTLGRGGSDT
                     SAAALGVSLQADYIDIFTDVDGMMTADPRIVEHARSLPRVSYNEVSNMAYQGAKVIHP
                     RAVEIAMTAKIPMRIRSTYLESTGTLVTSLTNDSDHFDVKERIVTGVAHVTNLTQISV
                     QTDTVKAQQLAFEILADAGISLDFINISTNSVIFTVPEEKSHVVKQLLEDADLQTTVR
                     QACAKVSIVGAGITGVPGVTAKIVGALSEKNIPILQSADSHTTIWVLVKEEDLISAVN
                     ALHDVFCLEIK"
     gene            4528..5409
                     /gene="dapA"
                     /locus_tag="U0280_001677"
     CDS             4528..5409
                     /gene="dapA"
                     /locus_tag="U0280_001677"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEM2271627.1"
                     /translation="MDLGKVITAMVTPIHPEKDKVCKKRIHHLVNHLIKNGSDGLVIA
                     GTTGESPTLSHDEKIKLFRQVIETNDGRAKLIAGTGSNNTAETIAFTKEVAELGGIDA
                     VLIVAPYYNKPNQDGLYAHFAAVSEASDLPVVIYNIPGRSVVNIEPETIIRLAKLPNI
                     VGVKESSGNLDNISKIIAETSDDFQVYSGDDSLTLPILAVGGNGVISVASHVVGNEMQ
                     EMIQAFERGEVQKAAQIHRELLPLMNGLFSVPNPAPTKYLLNQQGISVGPVRLPLVDL
                     NAEQGTKLQAILEGLSK"
     gene            5429..7096
                     /locus_tag="U0280_001678"
     CDS             5429..7096
                     /locus_tag="U0280_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM2271628.1"
                     /translation="MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPE
                     NELLGIDIVIPDFKYLEENKDRVKAVFLTHGHEDAIGALPYLLQKIKAPVYGTELTIA
                     LAKSALKEHRKLRFKNFHVVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIV
                     YTGDFKFDQSAKDGYASDLSHIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRH
                     AFRMADGRIIVACVASNLIRLQQVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIE
                     EDLIVPLKELKKYSDDEITIIETGNLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTP
                     SPSLETMMAKTMDMLYKAGAKVLTMSNNLFISGHASQEDLKLMINLLKPRYFVPVHGE
                     YRMLISHAKLAHEVGMAKSEVFIVGKGEILEYKNDKMTAGNRVYSGNTLIDGLGVGDV
                     GNIVLRDRKLLSEDGIFIVVVTLNRKSKTITSGPEIISRGFIYVRESEHLIEESSKVV
                     TKIVEKNLQETGFEWAKLKQDIRDQLNRYLFEQTKRRPMILPIIMEV"
     gene            7185..8525
                     /locus_tag="U0280_001679"
     CDS             7185..8525
                     /locus_tag="U0280_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2271629.1"
                     /translation="MAKFTYDVVIIGSGASGTTVAFEAQAAGLKVAIVEERSWGGTCV
                     LRGCDPKKVLVGAREARNLSTRLRGKGIKQAATISWTDLMAFKETFVENVPESRLENF
                     QEAGIETFFGAASFQDSHSLQVGDDLIQANKIVIATGATPSTLKVEGQEYIQTSDDFL
                     SLEKLPDSVVFIGGGYISFEFASIALATGREVHIIHHNSEPLKKFDPDFVAALVSNMK
                     EEGIHFHFDTDITKVENKGEKLHIHGKDGFSLQTDLIIGATGRKPNIAHLSLENANID
                     YTKKGIIVNEKLQTTNNPHIYACGDVAATKGAPLTPVVSMEAAFVAKNVIGGDEKMIY
                     PAIPSVVFTSPKLASIGISAEEAKAHPEKYQIKNHDTTNWYTYKRTNEQIALAKIIED
                     RESGQIKGAHFLSEEADYMINYVAILMKANLTLADLQSVIFAYPSPASDLTALN"
     gene            8578..9228
                     /locus_tag="U0280_001680"
     CDS             8578..9228
                     /locus_tag="U0280_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271630.1"
                     /translation="MEIWIIAGICAFLIFIAGIVILFFPARRKIGAILTSAGMLLMVG
                     SIIGIIVSFSHYQQVQNDVFNYSSKGTSQATPEETKTYKVNFEDSADNIKKKITTVTV
                     EKKETYSTSASKPVDGSITIALEITNNAVKTLETYPNQGQLEANKLDLNGGDAVLSNF
                     DTTEIKPGETAKGKIVFPVDNLDKVSDISWISYSFLSYLKDSSTPITTETGKIELK"
     gene            complement(9267..10868)
                     /locus_tag="U0280_001681"
     CDS             complement(9267..10868)
                     /locus_tag="U0280_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2271631.1"
                     /translation="MLTVNNVGLRYGDKKLFEDVSIKFLPGNCYGLIGANGAGKSTFL
                     KVLSGELDSQSGNVHIGSGERLAVLRQDHFQYDNELVLNTVIMGHERLYKIMDEKNAI
                     YMKEDFSDEDGIRAAELEGEFAELDGWEAESDAAVLLNGLGIPTDLHGKLMKDLTGGE
                     KVKVLLAQALFGKPDILLLDEPTNHLDIRAIHWLEEFLINFDNTVIVVSHDRHFLNKV
                     CTHIADLDFSKIKLYVGNYDFWYESSQLAQTMMGDRNKKKEEKMKELQDFIARFSANA
                     SKSKQATSRKKMLEKITLEDIQPSSRRYPFIQFKPDREVGNDLLTVTNLSKTIDGVKI
                     LDNLSFSINRNDKVALVGDDEVAKTVLFQILAGEMEPDEGSYKWGITTSQSYFPKDNS
                     EFFEENDMSLVEWLRQFSPEDDSEAFLRGFLGRMLFSGDEVLKKVRVLSGGEKVRCML
                     SKMMLSGSNVLLLDEPTNHLDLESITALNNGLEAFKGAMIFASHDHQLLQTIATRIIN
                     LSKDQFYNKEISYDEYLKEVMNVAE"
     gene            11008..>11081
                     /locus_tag="U0280_001682"
     CDS             11008..>11081
                     /locus_tag="U0280_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM2271632.1"
                     /translation="MNYEQILQEKVALCLTLQAAKETFP"
BASE COUNT         3808 a         2007 c         2135 g         3131 t
ORIGIN      
        1 ttacgtcttg gtattgttca aattgtgcaa ggggatacgt acaaacgtca attagaagaa
       61 acagataacg taacagtttc caaaaacgta ccacgtggta gcatttatga ccgaaattac
      121 aatttgctgg ttggtaattc agcggttaaa tctattactt acacacgtag tcaacaaaca
      181 cagactgcag aaactctaca tgtagcccaa acattagaaa agctaattac tgtcgagcct
      241 gaaaagttaa ctgaccgtga tttgaaagat tactggattt taacgcatca aaccgaatcg
      301 ctaaaccgct tatcagcgaa agaacaagcg cttgattcat ctaaagccta caaaatccaa
      361 gttgacaaag tgacaaaaga agatatcgct agcttgacca gtgaagactt aaaagtagca
      421 accatctata agaaaatgac aactggatat gctatgactg aatctgttgt gaaaaataaa
      481 gatgtaacag acgaagaaat cgcacgtgtc agtgaaaata tggacagttt acctggtgta
      541 gatactacta cagactggaa tcgttattac acatatgatg aaactttacg ctcaatttta
      601 ggttctgttt ccacagctaa agaaggtcta ccaaaagaca aagcggaata ctacttatct
      661 caaggatata gtcgtaatga tcgcgttggt aaaagctatc tagaagctca atatgaaagt
      721 gtgctcgctg gatcaaaatc tcaatcagaa agcgtacttg attctaaagg taatattatt
      781 gaaactgtca acaaatacga aggctccaaa gggaaagatt tagttctttc tgttgatgtt
      841 gaatttcaaa aagcagtaga agaaattctc aaaaaaaaca tcaaacaagg taaacaatat
      901 gctggttcag atttatttga ccgcgcattc gttgttgcca tggatccata ttccggagaa
      961 gtccttgcac tagcaggaca gaaactaaat gacaagggtg agtttgaaga ttattccctt
     1021 ggtacattta caactgccta cgcaatgggc tctgctgtca aaggttctac tatccttggt
     1081 ggtattatgg acggcgctat tacaaacaaa actgttttca ctgaccaacc aattgtacta
     1141 aaaggaacaa aaccaaagag ctcatggttt aacagaaccg gagctggtaa tagaccactt
     1201 gatcctgtag gagctttaga aatttcttct aactcctata tgtaccaagt tgcaatgaaa
     1261 atgggtggcg caaactatgt accaaacgga cctcttagag caccacttag cacctttgac
     1321 gatatgcgtt actactacaa ccaattcggt ctaggtgtaa aaactggcat cgaccttcca
     1381 ggtgaacaaa ctggttataa aggggacgac caaacaatcg gtaaaattct cgatttcgct
     1441 atcggacaat atgactccta cacaccactt caaatggctc aatatgtttc tactattgcc
     1501 aatgggggct caagaatcgc tcctagtatg gtaaaagaaa ttagaaatcc aagtactaat
     1561 ggtgactctg ttggaacact tgcaacagct aatgaaccaa aagtattaaa taaaatcggt
     1621 gtttctgaaa gtgatatcaa aacagtacaa caaggcttct atgaagtaac acatggttca
     1681 acaggtaccg caagaactgt tttcacttca agtgattacg atgtcgctgg taaaacaggc
     1741 accgcagatg cgttctatga tggaccaaaa gaaggtaaca aaatggccag tgtttggaat
     1801 acaacattcg tcggttatgc gccagtggaa aaaccggaaa tagcaatttc cgttgttgtt
     1861 ccttggattt atcgtccata tggtacggac caaaaaacaa atatgaaaat ctccaaagaa
     1921 gtattcgaca aatacttcga acttaaaaaa gaacgctctg aatcgaaaaa agatacttca
     1981 aaagtagaac aaccaattaa caacaaagaa gctgctgcga aagcacaatc agaacaaacc
     2041 gaaaattaat caaaaaccac tttcatttat ttggaagtgg tttttttatt tcaaactaac
     2101 aaacaattta aaaaaatagt tgctaatgcg tagaaaaaac tgcgaaaagg ctttgtttat
     2161 ggtatgataa agtaagtgta aaattaacca gatttctgtt tttaggcagg aatacgagga
     2221 ttaaattgaa ggaggaattg taaactatga caaaaagcta tcatgtcgca gttgtaggtg
     2281 caactggtgc agttggtacc caaatgattg aattactaga agaggcggcg acttttaaga
     2341 taaagcaagt ttcattcttg tcttctattc gttctgctgg aaaaaaacta tccttccgtg
     2401 gtgaagaagt aactattcaa gaagccacac ctgaaagttt tgaaggcgta gatatcgctt
     2461 tatttagcgc tggtggttct gtatcgaaag cacttgcgaa agaagcagtt aaacgtggag
     2521 ctatcgttat tgataacacg agtgcatatc gtatggatcc aacagttcct ttagtcgttc
     2581 cagaagtgaa tgaaaaagca cttttctcac ataagggtat tattgctaat cctaactgtt
     2641 ccactattca gatggtagca gccctcgaac cgattcgaga agcattcggc ttaaatcgta
     2701 ttattgtttc cacttatcaa gctgtttctg gctctggtgt aagcgcgatt caagaattaa
     2761 aagatggtag cagagcagtt ttagataaca aagaattcac tccacaaatc atgcccgtta
     2821 aaggggacaa aaaacattat ccaattgctt ttaatgcatt gccacaaatt gacgttttca
     2881 cagagaatga ctatacatac gaagaaatga aaatgatcaa tgaaacaaaa aaaatcatgg
     2941 aagacaacac aataaaagtt tctgctacgt gcgttcgtat cccagtagtt agcggacact
     3001 ctgaaagtgt ttatatcgaa gtggataaag aaggcataac tgctaaagaa atccaaaatg
     3061 aactaaaaaa cgcacctggt attgtcctag aagatgaccc agcaaatcaa gtttacccac
     3121 aagctgttca agctgcaggt aagaaagaag tcttcgttgg tcgtattcgt gctgacattg
     3181 acgatcctaa aggttttcat atgtggattg tttctgacaa cttactaaaa ggtgccgcat
     3241 ggaattcgat tcaaatagct gaaagtttag ttaaactagc gattatttag aggtgtaagt
     3301 aatgaaaatt attgtccaaa aatttggcgg aacatccgta caaaatgaaa aatcacgttt
     3361 gatggcattc aatcatatca aacaagtact aaaagaagga tataaagttg ttgttgtcgt
     3421 ttcagccatt ggtagatacg gagatcctta tgcgacagac acactattag aacttattgg
     3481 tgctaaaaat acaaagctaa cagcaagaga acaagatact ttactctcgg taggcgaaac
     3541 tatttcagca tctgtattta ccaatatgtt aaaagaagca aatattaaag cagaggcgtt
     3601 ttctggtggt caagcaggca tcattacatc agacgaccat ttaaatgcaa aaatcacaga
     3661 agtggataca gctcgtttga aagatgcatt aacgaacctt gatgtagctg tagttgctgg
     3721 cttccaaggt attactgcaa atggggatat ttccacatta ggacgcggag gaagtgatac
     3781 atccgcagcg gctctaggag tttcgttaca agcagactat attgatatct ttacagatgt
     3841 agatggaatg atgacagccg atccacgtat tgtagaacac gcacgttcac ttccacgagt
     3901 aagttacaac gaagtaagca atatggcgta tcaaggtgca aaagtgatcc atccacgtgc
     3961 agttgagata gcgatgactg caaaaatacc aatgcgaatc cgttctactt atttggaaag
     4021 cactggaaca cttgttactt cattaaccaa tgattcagat cattttgacg tgaaagaacg
     4081 aatagtaacc ggcgtagctc atgtaaccaa tttaacacaa atatccgtac aaacagatac
     4141 ggtaaaagcg caacaactcg cttttgaaat attagcagat gcaggaatca gccttgattt
     4201 cattaacatc tctaccaact ctgtcatttt tacggtgcca gaagaaaaat ctcatgtagt
     4261 aaaacaacta ttagaagatg cagacttaca aacaactgta cgacaagctt gtgcgaaagt
     4321 ttctattgtt ggcgccggaa tcacaggcgt tcccggtgtt actgcaaaaa tcgttggcgc
     4381 attatctgaa aaaaatatcc ctattttaca atcagcggat agtcatacta ctatttgggt
     4441 attagtaaaa gaagaggact taatttcagc agtcaatgcc cttcatgacg tattttgttt
     4501 ggaaattaag taaggaggaa atgaaagatg gatttaggga aagtaattac agcaatggtg
     4561 acaccaattc acccagagaa agataaagta tgcaaaaaaa gaattcatca tctcgtgaat
     4621 cacttaatca aaaatggctc agacggttta gtaatcgctg gaacaactgg cgaatctcca
     4681 actttatccc atgatgaaaa aataaaatta ttccgccaag taattgaaac aaatgacgga
     4741 cgtgcaaaat taattgctgg aacaggctcc aataacacag ctgaaacaat tgcttttaca
     4801 aaagaagttg ctgaactcgg tggaattgac gctgttttaa tcgttgcacc gtattacaat
     4861 aaaccaaatc aagatgggtt atacgcgcac tttgctgcgg tttctgaagc ttctgattta
     4921 cctgtagtta tctataatat tccgggtcgt agtgttgtta atatcgagcc agaaacaatt
     4981 atccgcctag caaaattacc taatattgtt ggtgtaaaag aatctagcgg taacttggat
     5041 aatataagta aaatcattgc tgaaacctca gacgatttcc aagtatacag tggggatgat
     5101 agcttaactt taccaatcct tgcagttggt ggaaacggcg ttatttctgt tgctagccat
     5161 gttgtaggaa atgaaatgca agaaatgatt caagcatttg agcgtggaga agttcaaaaa
     5221 gctgctcaaa tccaccgaga attattgcca ctcatgaacg gtttattctc tgtaccaaac
     5281 ccagcaccga caaaatattt actcaatcaa caaggcatta gcgttgggcc tgtaagacta
     5341 ccacttgtag atttgaatgc tgaacaagga acgaaattac aagctatatt agaaggactt
     5401 tctaaatagt tcaaaggagg tctacgcttt gacaataaaa aaagcgaaaa acataaaaat
     5461 cattccactc ggcggtgtcg atgaaagtgg caaaaattta tatgtagtag aaatagacga
     5521 agatatcttt atattagatg cgggcttaat gttcccagaa aatgaattac taggaattga
     5581 tattgttatt ccagatttca aatatttaga agaaaataaa gatcgtgtaa aagctgtttt
     5641 cctaacacac ggtcacgaag atgcaattgg agcattgcca tacttgcttc aaaaaatcaa
     5701 agcaccagtt tatggtacag aattaacgat agcactggca aaatcagcac ttaaagaaca
     5761 ccgtaaacta cgcttcaaga atttccatgt cgttaacgaa gaaacaactt tatccttttc
     5821 aaaaattgat gtttcctttt tccgtacaac gcacactatt cctgattctg ttgggattgt
     5881 tcttgaaaca agcgaaggat ctattgttta tacaggggat ttcaaattcg atcaatcagc
     5941 gaaggacggc tatgcttctg atttaagcca cattgcagaa tttggcgaaa aaggggtact
     6001 agctttactt tcagatagtt cagaggctga gcaccctgga acaacgtcta gcgatagttt
     6061 aattgaagaa gaaattagac atgcgttccg aatggcagac ggcagaatta tcgtcgcttg
     6121 tgtagcttct aatttaattc gcttacaaca agtactcgat gcatccgttg caaccaaacg
     6181 taaagtcgct attgttggta aagaattaga gcgcgttttc gaaattgctg gcagtttagg
     6241 taaaatcgtc attgaagaag acttaattgt tccgttaaaa gaacttaaaa aatatagcga
     6301 tgacgaaatt actattattg aaacaggtaa tctaggagaa ccaattcaat cattacaatt
     6361 aatgactaaa ggaaatcatc cacaattcaa catcaaacct ggtgatactg tttacattac
     6421 gacgacgcca tcaccatctc ttgaaacaat gatggctaaa acaatggata tgctctataa
     6481 agcaggtgcg aaagtgctaa ctatgagcaa taatctattc atctctggtc atgcaagtca
     6541 agaagactta aaattaatga ttaacttatt aaaaccaaga tattttgttc cagttcacgg
     6601 agaatatcgc atgttaatca gtcacgctaa attagctcat gaagttggta tggcaaaatc
     6661 agaagtattt atcgtaggta aaggtgaaat tttagaatat aaaaatgata aaatgacagc
     6721 tggtaatcgc gtatactctg gtaatacttt aattgatggt ttaggtgttg gtgatgttgg
     6781 taacatcgtg ctacgcgacc gtaaattgct ctcagaagac gggattttca ttgttgtagt
     6841 aacacttaat cgtaaatcaa aaaccattac ttcaggacca gaaatcattt cacgtggctt
     6901 tatttatgtg agagaatcag aacatttgat tgaagaatct tccaaagttg ttacaaaaat
     6961 tgttgaaaaa aatcttcaag aaaccggctt tgaatgggcg aaattaaaac aagacattcg
     7021 tgaccaatta aatcgctact tatttgaaca aacaaaacga cgtccaatga ttttaccaat
     7081 tattatggaa gtctagaatg aactgctgca cattcgtgtg tggcagtttt tttcgtttga
     7141 aagtgaaatc agacgggaaa acaagctagg aaggagtgat ttaaatggca aaatttacat
     7201 atgatgtagt aataatcgga agtggcgcaa gtggtacaac agtagcattt gaagcacagg
     7261 cagctggatt aaaagtagca attgtagagg agcggagttg gggtggaacg tgtgtcctca
     7321 gaggatgcga ccctaaaaaa gttctcgtcg gagcaagaga agcaagaaat ctttctacca
     7381 gacttcgcgg caaaggtatt aagcaagcag cgacaattag ctggacagat ttaatggcat
     7441 ttaaagaaac ttttgttgag aatgtgccag aaagtcgttt ggaaaacttt caagaagccg
     7501 ggattgaaac attctttggt gcagctagtt tccaagattc ccattcctta caagtcggcg
     7561 atgatttaat acaagctaat aaaattgtca tcgcaacagg agcaacacca agcacgttaa
     7621 aagtagaagg gcaagaatac attcaaacca gtgatgattt tttatcactt gaaaaactcc
     7681 ctgattctgt cgtgtttatt ggtggtggct atatttcatt tgaatttgcc tccatagcac
     7741 tcgcaacagg gagagaagtg catattatcc accataatag tgaaccttta aaaaaatttg
     7801 atcctgattt cgtggctgca ttagtgtcca atatgaaaga agaaggtatc catttccatt
     7861 ttgacacaga tattacgaag gttgaaaata agggggaaaa actgcatatt catggcaaag
     7921 atggattttc attacagaca gatttaatta ttggggcaac tggtagaaaa ccaaatatcg
     7981 cgcatttatc attggaaaat gccaacattg actacactaa aaaaggcatt atcgttaatg
     8041 aaaaacttca aaccactaat aaccctcata tctacgcatg tggcgatgtc gcggcaacaa
     8101 aaggagcacc tttaacaccc gttgtcagca tggaagcagc atttgttgct aaaaatgtca
     8161 ttggcggcga cgaaaaaatg atttatccag caataccaag cgtcgttttt acgagcccca
     8221 aactggcaag cattggtata agcgcagaag aagcaaaagc gcatccagaa aaatatcaaa
     8281 ttaaaaatca cgacacaaca aattggtata cttataaacg aaccaatgaa caaattgcgc
     8341 tcgcaaaaat cattgaagat agagagtcgg ggcaaatcaa aggcgctcat tttcttagtg
     8401 aagaagcaga ttatatgata aattacgttg ccatcttaat gaaagctaat ctaactttgg
     8461 ctgatttaca atctgttata tttgcctatc catctccagc aagtgactta actgctttga
     8521 actagaggct aaatatgtta tagtgaggga gaaattcgca taaaaggagc aaataagatg
     8581 gaaatttgga tcattgccgg aatatgtgct ttcttaattt ttatcgcagg tatcgtaatt
     8641 ttatttttcc cagccagacg gaagattgga gctattttaa ctagtgcagg gatgttatta
     8701 atggttggct ccattattgg tatcattgtt agtttttcac attatcagca agtacaaaat
     8761 gatgtgttta attattcttc taaaggaaca agtcaagcta ccccagaaga aacgaagacg
     8821 tataaagtta actttgaaga ttccgcagat aatattaaga aaaaaatcac tactgtgacg
     8881 gtcgaaaaaa aagaaactta ttcaacatcc gcaagtaagc cagtagacgg tagtattact
     8941 atcgctttag aaattaccaa caatgcagtt aaaactctcg aaacctatcc aaaccaagga
     9001 caactagagg caaacaagtt agatttaaat ggaggagacg ctgttttatc taattttgat
     9061 acaactgaaa ttaagcctgg cgaaactgcc aaaggaaaaa tcgtttttcc cgtagataat
     9121 ttagacaaag tttctgatat ttcatggatt tcttatagtt ttctaagcta tctgaaagat
     9181 tcatccacac caatcacgac agaaactggc aaaatcgaac taaaataaaa acaatatccc
     9241 gaaaatggga tattgttttt ttgtcattat tctgctacgt tcattacttc ttttagatac
     9301 tcatcataag aaatttcttt attgtaaaat tggtcttttg ataagttaat gatgcgcgtt
     9361 gcgattgttt gtaataactg atgatcatga gaagcaaaaa tcattgcgcc tttaaatgct
     9421 tccaagccgt tattcaatgc tgtaatggat tctaagtcca agtggttagt aggttcgtct
     9481 agtaaaagaa cgttagaacc tgaaagcatc attttggata acatacaacg aactttttct
     9541 ccaccagata agacgcgtac ttttttaagt acttcatcgc cactgaatag catacgacca
     9601 aggaagccgc gtaagaatgc ttcactgtca tcttctggag agaattgacg taaccattct
     9661 acaagactca tgtcgttttc ttcaaagaac tctgagttat ctttcgggaa atagctttgg
     9721 cttgttgtaa ttccccattt ataactaccc tcatcaggtt ccatttcacc agcaaggatt
     9781 tggaaaagaa ctgttttagc aacctcatca tcgccaacta aagcaacttt gtcatttcga
     9841 ttaatcgaga aagaaagatt atcaagaatc ttcacaccat cgattgtttt agacaagttt
     9901 gttactgtta gaaggtcatt tccaacttca cggtctggtt tgaactgaat gaaagggtaa
     9961 cgacgactag aaggttgaat atcttccagc gtgatttttt cgagcatttt tttacgactt
    10021 gttgcttgtt ttgatttcga tgcgttcgca ctgaaacgag caataaagtc ttgtaattct
    10081 ttcatttttt cttctttttt cttgttacga tcgcccatca ttgtttgagc taattggctt
    10141 gattcatacc agaaatcata gtttccgaca tataatttaa ttttgctgaa atcaagatcc
    10201 gcaatgtgcg tacacacttt atttaagaag tgacggtcat gggatactac gataacagta
    10261 ttatcaaagt tgattaaaaa ttcttctaac cagtgaatcg cacggatgtc aaggtggttg
    10321 gtaggctcat ccagaagtaa gatatctggt ttaccgaata aagcttgtgc aagaagcact
    10381 ttcacttttt ctccaccagt taaatctttc attagttttc cgtgtaagtc agtagggata
    10441 cctaggccgt ttaataaaac agcagcgtca gattctgctt cccaaccatc taattcagca
    10501 aattcgcctt ctagttctgc agcgcggata ccatcttcat cactgaaatc ttctttcata
    10561 taaatggcat ttttttcgtc cataattttg tatagacgtt catgtcccat gattactgtg
    10621 ttaagaacta gttcattatc atactgaaaa tgatcttggc gaaggacagc tagacgctca
    10681 cctgaaccaa tatgcacatt accactttgt gaatcaagct cgccagaaag cacttttagg
    10741 aacgttgatt taccagcacc atttgctcca ataagaccat aacagttacc tggtaaaaat
    10801 ttaatcgaaa catcttcaaa tagcttttta tcgccgtagc gtaagccaac attatttaca
    10861 gttaacattt tcttcctcca atactaagtt acttcttctt gaaatcagaa aaagcacaat
    10921 tactactatt ttaacatggt tagtgtagca aagaaagcat acacacataa ataaatgtta
    10981 taatatcaaa ataaggagga gagccggatg aattacgaac aaattttaca agaaaaagtc
    11041 gcgctttgtc tgactttgca agctgccaaa gaaacatttc c
//
LOCUS       DASDXX010000086        11063 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.086, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000086 DASDXX010000000
VERSION     DASDXX010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11063
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.086"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..177
                     /locus_tag="U0280_001683"
     CDS             <1..177
                     /locus_tag="U0280_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLDc N-terminal domain-containing protein"
                     /protein_id="HEM2271633.1"
                     /translation="LIIPVILLYLALLLTAIIDLTKNWNERKNPVIWLVVIIVINIFG
                     PIAYFIFGRKEEGN"
     gene            177..1082
                     /locus_tag="U0280_001684"
     CDS             177..1082
                     /locus_tag="U0280_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271634.1"
                     /translation="MKKLEIQGLKKKYNGKWVIKGIDLTINEKECVALIGPNGAGKST
                     MINMIVQILTQDEGQITLDGQNAKSVREKIGFLPQYPEFYGWMSATECLHFMGKLSNM
                     EKTDLKTRIKEVLILVGLEESANKKISTYSGGMRQRLGIAQAILHRPELLVLDEPVSA
                     LDPIGRREMMLLLDKLKKEITILFSTHILKDAEEICDRIAIIKNGELVSDKTVVQLME
                     EESSPVFDVEFSGDSEAWQTLLLQNEHVEKIERVGMVYQVYTTNQKAGSEAILKSLLQ
                     IEGEFIRVENRHQSLEEIFMEKVGK"
     gene            1079..1873
                     /locus_tag="U0280_001685"
     CDS             1079..1873
                     /locus_tag="U0280_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2271635.1"
                     /translation="MTHFNALLAREWLEQRRSLKIIWLPIVFALLGLTQPLMMYFLPE
                     ILKAVGTGAETEQVIALMGDQSAQEVMAQTLGSQFDQIGIIIIIVVAMACIQNDRTRG
                     MLAFIMTRPVSAAEYVLSKWVMQCMVGLSSLLIGYVLAAYYTYFLFGELAINSLTQAF
                     FVYAIWFIFVISLVVFASAVFDSNAVVAMISVFIAIVLGVISGFGGWIQMFNPAYLSK
                     NATMLIMSDKTMDYFIPTLCITILWIFAFISLTILMIKIKPLPKTE"
     gene            1943..3310
                     /gene="fumC"
                     /locus_tag="U0280_001686"
     CDS             1943..3310
                     /gene="fumC"
                     /locus_tag="U0280_001686"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEM2271636.1"
                     /translation="MERIERDTLGEISVDATKYWGAQTERSKRNFAIGDNPMPIEIIY
                     AFAQLKKATAKVNAAEGKLSEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNM
                     NVNEVIAHVANLTLGEGQIHPNDDVNMSQSSNDTFPTAMHIAAYGALVTKLLPEITKM
                     EAVLAEKKNKYMHLVKIGRTHLQDATPLTLGQEISGWEACLTNNKNYLETSMKAILPL
                     AIGGTAVGTGLNASRDFGDKVAEELMKQTGYPFTSDSNKYFALTSHSPINFVHGSIRS
                     LASDLMKIANDIRLLASGPRSGIGELTIPANEPGSSIMPGKVNPTQCEAMTMVAAQVM
                     GNDVTINVAASQGNFELNVYKPVIIFNFLESVKLLSDSMRSFRLHCLEGLTANEKVIE
                     TKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKQFDLWIDPL
                     KMTNL"
     gene            3414..4547
                     /locus_tag="U0280_001687"
     CDS             3414..4547
                     /locus_tag="U0280_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HEM2271637.1"
                     /translation="MSVLFTILLMAVIGGFIGAMTNYIAIRMLFRPYKAIYLFNKRLP
                     FTPGLIPKRRDELAEHIGKVVVSHLLTEDAIRARLLDENLQKEITDTITKMFHEKMQL
                     ETTPNELLHHFGYENAEIRSMTWVEKTLEKEINHFLTTKKTTKMSDLIPTMLESELTT
                     KLPHVTERITSKMTLFVSSEEGKIQIKQMLQKFFEEHGKMGSMARMFINIDSFSEKIQ
                     QEGLKLIGQEDTKNLINQLLTTEWKNFEAKELQELIPTEKQAHLAGQLTSELIQTFPH
                     EKLFNQPIQEMLRGYEAAITEKVIPFAVERMLDFVATHSAEIVERMDLAKLVETQIAT
                     FSLPEIEKLVVEISGRELKMITYLGGILGGFIGIIQGVLAMWI"
     gene            4629..4982
                     /locus_tag="U0280_001688"
     CDS             4629..4982
                     /locus_tag="U0280_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HEM2271638.1"
                     /translation="MAVNIYDLAHDLDKGIRETPEFISLQDAYREVNENADAKAKFER
                     FRDVQVTIQEKQMTGQEIDDETVDVAQQVAQEVQENELIVKLMEKEQAMSTIINDLNR
                     IIMTPLQDLYNVAND"
     gene            5125..6360
                     /locus_tag="U0280_001689"
     CDS             5125..6360
                     /locus_tag="U0280_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HEM2271639.1"
                     /translation="MKEIQFLHMADLHLDSPFIGLSTLPQPLFSAIQESTFQSLERIT
                     TVAIKEAVDFVLIAGDIYDSEDQSVRAQARFSKEMKRLEVANIPVFMIHGNHDFIEKH
                     KEKLTLPSNVHVFSEQVEVMSHKTATGVSVNIYGFSYNERHIRSSRVDKYKIQGNADF
                     HIALLHGSEVSSSEEHDVYAPFRVQEISKKGFDYWALGHIHKRQLLAESPSIYYPGNI
                     QGRNRKESGEKGASIITLSEASTTIDFIGTSPIIWEEAVITLPENSEINAFYRETTKL
                     LESYQGRSHSYFLHIIVKMENKQKIDTNDWLQMLQEEVEITDNTFVWVHKLTTEITNQ
                     SNSQTWYESHLAGEEIKHSFETLQDESAFYQAVEALYLESGVSRYLDDLSEIDRERLL
                     HDALMELGRTLAEVEGDDK"
     gene            6357..9080
                     /locus_tag="U0280_001690"
     CDS             6357..9080
                     /locus_tag="U0280_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2271640.1"
                     /translation="MRITSIDIIGYGKWSDAHFNNIANFQVFYGENEAGKSTIMAFIH
                     SILFGFPTKQQSIPRMEPKNGGPYGGRLTLEDTPLGKVIIERLKGKATGDVRIYYGDG
                     QTAGEEKLPEIIGEIDRNTYEAIFSFDIHGLQNIHQWKKKEFERYLLATGTTGSDALL
                     KGAEALQKKLDSLYKPSGRNPLINQQLKKVKEAQHAFQNAKKQNAQYEQLINEKEQAI
                     VRQTELQKEKTTMRVELDALATLADLWPLYQEWKALSNKASETTEATFPPDGVIRLEH
                     LNLREKEWQNQLIQLEERQKNLISNNNYEHSAFFAENEAEVTYLIETYAAFGEREIQL
                     KNLKQEIKFQQVDTKQPLRIWSSELEQTMIHLKEKEQSHKEQQHDIQLKLKFTNNSEE
                     KLQKKIDQIEAEMWDNKTFQQAKEKMQDSPKTSKTKTMVSLGIFAVAFVLMIVFQAIW
                     SVALVFVSALIVGYAFITTGKSSPTNNEQILAFLEQKKIRQEWQQLLNEMDMVASQIA
                     ELRAAENKLSENIYQHTMELRHFFSDLGINTEPSSNWHYELSIYKKNSEKRQLAMELI
                     SKLEPLAEKQEAYRARLENLKLPIDYTDTEEKITFLRQGLLYYRNHLTENAKLAEKLE
                     QVTMQLDLVKQDLLLVKKEKADLLERANVSNEEDFRMAAMRVKEEQKWRERLVLIEAQ
                     LEPEKREALNRYENQATIKEKELQLEESLRQIELEQEQLHASLAAQNHAIDKLEEGGT
                     FAVLMQEFYSEKSKLQQISAEWTETKLALQMLQNTMQQLQEGKLPKTLKLASEYFNHL
                     TSGNYRKVYLQDNRLQVESKDRIPFFPEELSQATKEQLYLAIRFALIDVIHKDFPLPI
                     IIDDGFVHFDSSRMGQMMQLLQKRKSENQVIFFTCHQETRKYFSSEDIRVL"
     gene            9125..10066
                     /gene="yhaM"
                     /locus_tag="U0280_001691"
     CDS             9125..10066
                     /gene="yhaM"
                     /locus_tag="U0280_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM"
                     /protein_id="HEM2271641.1"
                     /translation="MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSG
                     ELEAKLWDVKESDEANYGVQQIVHLMGDIQNYRGRKQLKIRQIRQATALDGVSASEFM
                     ETAPINKEEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGL
                     SFHVVSMLRLAKSVADLYPSVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGH
                     ISIVVEEVSKIADELSIDGEEVVVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLM
                     DASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPIFE"
     gene            complement(10107..10988)
                     /locus_tag="U0280_001692"
     CDS             complement(10107..10988)
                     /locus_tag="U0280_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="foldase"
                     /protein_id="HEM2271642.1"
                     /translation="MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTQDELYDAM
                     KDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSF
                     KSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKEVEQKLKD
                     GAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG
                     YHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKD
                     AFKDFDGSSSSDSDSSK"
BASE COUNT         3893 a         1854 c         2172 g         3144 t
ORIGIN      
        1 ttaattatac ccgtaattct tctctattta gctttattat taacagctat tattgactta
       61 acaaaaaact ggaatgaacg aaaaaatccg gttatctggc tagttgttat tatcgttatc
      121 aacatttttg gcccaattgc ctactttatt tttggccgaa aagaggaagg taactaatga
      181 aaaaattaga aattcaagga ctaaagaaaa aatataatgg caagtgggtc attaaaggaa
      241 ttgatctcac aatcaatgaa aaagaatgcg tggcacttat cgggcctaat ggtgcaggga
      301 agtcaaccat gattaatatg attgtccaaa tcttaacgca ggatgaagga caaattactt
      361 tagacggtca aaatgcaaaa tcagttcgcg aaaaaattgg ttttttaccg caatatcctg
      421 aattttatgg ttggatgagt gcgacagaat gccttcattt tatgggaaag ctatctaaca
      481 tggaaaaaac agatttaaaa acacggatta aagaagtatt aatactagta ggcttagaag
      541 agagtgcaaa taaaaaaatt agcacgtatt caggtggaat gcgacaacga ctcgggattg
      601 ctcaagctat tttgcatcga ccagaacttc ttgtactaga tgaaccagta tccgcccttg
      661 atcccatcgg tcgccgggaa atgatgttgc tattagacaa actaaaaaaa gagattacta
      721 tcctattttc cacacatatc ttaaaagatg ctgaagaaat ttgtgaccgg attgccatca
      781 ttaaaaatgg cgaactggtc tcagataaga cagtagtcca acttatggaa gaagaaagct
      841 cccctgtgtt tgatgtcgaa tttagcggag atagtgaagc ttggcaaacg ttactgcttc
      901 aaaatgaaca tgtggagaaa attgaaagag ttggaatggt ttatcaagtt tacacaacta
      961 accaaaaagc tgggtcagaa gctattttga aatctttatt acaaatagaa ggtgaattta
     1021 ttcgtgtcga aaacagacac caaagcttag aggaaatctt tatggagaag gtgggcaaat
     1081 gacacatttt aatgctttat tagcaagaga atggctggaa caacgtcgaa gtttaaaaat
     1141 tatttggctt ccgattgtat tcgcacttct tggcctcact caaccactaa tgatgtattt
     1201 tttaccagaa attctaaaag cagttggcac gggagcggaa acggagcaag taattgcatt
     1261 aatgggggat caatcggctc aggaagtgat ggcacaaaca ctcggttccc agtttgatca
     1321 aattggcatt atcattatca tcgttgttgc gatggcttgc attcaaaatg accgaactag
     1381 aggcatgtta gcgtttatca tgacaagacc agtgagcgct gcggaatatg ttttatcgaa
     1441 atgggtaatg caatgtatgg tggggttaag ttcactttta attggctatg tgttggcggc
     1501 ttattatacg tactttttat ttggagaact agcgatcaat tctttaacgc aggcattttt
     1561 tgtgtacgcc atctggttta ttttcgtaat tagcttggtt gtttttgcga gcgcggtttt
     1621 tgatagtaat gccgttgttg cgatgattag cgtgtttata gcaattgttt taggggtaat
     1681 cagtggtttt ggcggctgga ttcaaatgtt taatccagca tatctaagta aaaatgcaac
     1741 aatgctaatt atgtctgata agacgatgga ttattttatt ccaacacttt gtattactat
     1801 cttatggatt ttcgcattta taagtctaac tatcctaatg ataaaaataa aaccactccc
     1861 aaaaacggaa tagcgaacat ttttcatgtg ttttgcgaaa acatccgctt tatactaaaa
     1921 tagaataaaa aggggtggcg acatggaacg aatagagcga gatacgcttg gagaaatttc
     1981 tgtagatgcg acgaaatatt ggggagcgca aacagaacga agtaaaagga actttgctat
     2041 tggtgataat cctatgccga tagaaattat atatgctttt gctcaattaa agaaagccac
     2101 tgcaaaagta aacgcagcag aaggaaaact atccgaagaa aaagcgatag cgattggcca
     2161 ggtttgtgat caaatcattc aaggagaact agatgagcat tttcctttag tcgtttggca
     2221 aaccggaagc ggaacgcaga gcaacatgaa tgtcaatgaa gttatcgcac atgttgccaa
     2281 cttaacttta ggcgaaggac aaattcatcc gaatgatgat gtcaacatgt cgcaaagctc
     2341 gaacgacaca tttccaacag cgatgcatat cgctgcatac ggggctttag taacaaaact
     2401 tttacctgaa ataactaaaa tggaagctgt tttggcagag aagaaaaata aatacatgca
     2461 tctcgttaaa attggcagaa cacatttgca agacgcaacc ccattaacac ttggccaaga
     2521 aattagtggc tgggaagcat gtcttacaaa taataaaaac tatcttgaaa caagtatgaa
     2581 agcaattttg ccacttgcga ttggtgggac ggcagttgga actggcttaa atgcctcacg
     2641 tgattttggt gataaggttg ccgaagaatt gatgaaacaa acgggatatc cttttacttc
     2701 tgattccaat aagtattttg ctctaactag tcatagtccg attaattttg ttcatggatc
     2761 cattcgtagc cttgcttcgg atctaatgaa aattgctaat gatatccgtt tattagcaag
     2821 tggaccacgt agcggcatag gtgagttaac aatcccagct aatgaaccag gaagctccat
     2881 tatgccagga aaagtaaatc ctactcaatg tgaagcaatg acgatggtag cggctcaagt
     2941 catgggaaat gatgtgacaa ttaatgttgc cgccagccaa ggaaactttg aactcaatgt
     3001 ctacaagcca gttatcattt ttaatttctt agaatctgtc aaactgcttt cagatagcat
     3061 gcgttcgttc cgattgcatt gtttggaagg acttactgcg aatgaaaaag ttattgaaac
     3121 aaaagtaaat gactccctaa tgcttgtgac agcattgaat ccgcatatcg gctatgaaaa
     3181 agctgccaaa attgccaagc tggcttttga tgaaaatacg acattaaaag aagcggcaat
     3241 caaaaccggt tttgtgacag aaaaacaatt tgatttatgg attgatccgt taaaaatgac
     3301 taatttgtaa tctcatactt tagaatgaac ttccctagaa acaattgttg tctagggatt
     3361 tttcacgtat aatgaaacca cttttactag acaaatatta ggagatgcaa aacatgtcag
     3421 tgttatttac gatactttta atggctgtga ttggcggatt tatcggcgca atgacgaatt
     3481 atatcgccat acgaatgctt tttcgccctt acaaagccat ttacctattt aataaacgtt
     3541 taccatttac tccaggttta atccctaaac gacgtgatga actagccgaa cacatcggaa
     3601 aagtagtagt gagtcatttg cttacagaag acgccattcg tgctcgtctg ctagatgaga
     3661 atttacaaaa agaaataaca gatactatta cgaaaatgtt ccatgaaaaa atgcaattag
     3721 aaaccacacc caatgaactc ctccatcatt tcggttatga aaatgcagaa attcgttcta
     3781 tgacatgggt agaaaaaact ttagagaaag aaatcaacca ctttctaact actaaaaaaa
     3841 cgacaaaaat gagcgattta attccaacta tgttagagtc agaactaaca actaaactac
     3901 cgcatgtaac agaaagaatc acgagcaaaa tgacattgtt tgtatcgagt gaagaaggca
     3961 aaattcaaat taaacaaatg ctacaaaaat tctttgaaga acacggcaaa atgggaagca
     4021 tggctagaat gtttattaat attgatagct tttctgaaaa aattcaacaa gaaggcttaa
     4081 aactcatcgg gcaagaagac actaaaaatc taattaatca acttctaaca acagaatgga
     4141 aaaatttcga agcaaaagaa ttacaagagc ttatcccgac tgaaaagcaa gctcatttag
     4201 ctggacaact tacttctgaa cttatccaaa cttttcctca cgagaaatta tttaatcaac
     4261 ccattcaaga gatgctacgt ggctatgaag cagctattac agaaaaagta attccttttg
     4321 cagtagagag gatgcttgat tttgtagcaa cacatagtgc agaaatagta gagagaatgg
     4381 atttggcgaa actcgttgaa acacaaattg ccactttttc tttacctgaa atcgaaaaac
     4441 ttgttgtaga gatttctggt agagagttaa aaatgattac ttatttaggt gggattttag
     4501 gtggatttat tggaattatc caaggtgttc tcgcaatgtg gatttagttc ttttatactg
     4561 gaataaccgg cgactttttg ttatagtgaa acagaagtga caaatacaga tatttggagg
     4621 atttatcaat ggcagttaat atttatgatt tagcacatga tttagacaaa ggaattcgtg
     4681 aaacacctga attcatcagc ttacaagatg cataccgtga agtaaacgaa aatgcagatg
     4741 caaaagcaaa attcgaacgt tttcgcgatg ttcaagtaac tatccaagaa aaacaaatga
     4801 ctggtcaaga aattgacgac gaaacagtag atgtagcaca acaagtagcg caagaagttc
     4861 aagaaaacga actaatcgtt aaattaatgg aaaaagagca agcgatgagt acaattatca
     4921 atgatctaaa tcgcattatc atgacgccat tacaagatct ttataatgta gctaatgatt
     4981 aattttcatt aaaccaagtg gctctattat ttgttattta tttagcagat aatagggtca
     5041 tttttttatt ggaaatgctt gtacctaacg taatagtaag atataataag aacgtatatt
     5101 cggtttttat aggaggcgaa agtcatgaaa gaaatccaat ttttacatat ggctgattta
     5161 catttagata gtcctttcat cgggctttcg acactaccac agccactttt ttctgccata
     5221 caagaaagca catttcaatc attagaacga attacaactg tggcgataaa agaagcagta
     5281 gatttcgttt taattgctgg agatatatat gatagtgaag atcaaagtgt ccgtgctcaa
     5341 gcgcgttttt caaaagaaat gaaacggtta gaagtggcga acatccccgt gtttatgatt
     5401 catggaaatc atgattttat agaaaagcat aaagaaaaac tcacattacc aagcaatgtg
     5461 cacgtttttt cagagcaagt agaagtaatg tcgcataaaa ccgccactgg tgtgagcgtt
     5521 aatatttatg gatttagtta taatgaacgt catattcgct caagccgagt agataaatac
     5581 aagattcaag gtaatgctga ttttcacatt gcgttattac atggctcaga agtatctagt
     5641 agcgaagaac atgatgtgta cgccccattt cgtgtacaag aaattagcaa aaaaggtttt
     5701 gactactggg cactaggtca tattcataag cgacaattgc ttgcagagtc tcctagcatt
     5761 tattacccag gaaatattca aggtcgaaat cgcaaagaat caggtgaaaa gggcgccagt
     5821 atcattacat tatcagaagc aagtacaacc attgatttca ttggaacaag tccgattatt
     5881 tgggaagaag ctgtaattac cttaccagaa aatagtgaga taaatgcctt ttaccgagaa
     5941 actactaagt tgttagagag ctatcaagga agaagtcact cttattttct tcatataatt
     6001 gttaagatgg aaaataaaca aaaaatcgat acgaatgatt ggttacaaat gcttcaagaa
     6061 gaagtagaaa tcacagataa cacatttgta tgggtacaca aattaacaac ggagataacg
     6121 aatcaaagta attcacaaac atggtacgaa tcacatttag caggagaaga aatcaagcat
     6181 tcgtttgaga cactacaaga tgaatctgct ttttatcaag cagtagaggc tctgtatctt
     6241 gaaagtggag tgagtagata cttggatgat ttgtctgaaa ttgatcgtga gaggctacta
     6301 catgatgctt taatggaatt agggaggacg cttgcagaag tggaaggtga tgataaatga
     6361 gaataacatc tattgatatc attggttacg gaaaatggtc cgatgctcat tttaataata
     6421 ttgccaattt ccaagtattc tatggtgaaa atgaagccgg aaaatcaact attatggctt
     6481 ttatacatag tattttgttc ggtttcccaa cgaaacaaca atcgataccg cgcatggagc
     6541 caaaaaacgg tggaccatat ggtggaagat taacactaga agacacacct ttaggaaaag
     6601 tcatcattga acgcttgaaa ggaaaagcaa cgggagatgt tcggatatat tacggggatg
     6661 gccaaaccgc tggagaagaa aaattaccag aaattatcgg tgaaattgat cgaaacactt
     6721 atgaggctat tttttcattt gatatacacg gactacaaaa tattcatcaa tggaaaaaga
     6781 aagaatttga acgctatttg ttagcaactg gaacaacagg atcggacgct cttctaaagg
     6841 gagccgaagc attacaaaaa aaattagata gtctatataa accaagtggg cgaaatccac
     6901 taattaacca acaactaaaa aaagtaaaag aagcccaaca cgcttttcaa aacgcaaaaa
     6961 aacaaaatgc gcaatatgaa caattaatca atgagaaaga gcaagcgata gtaagacaaa
     7021 cagagctaca aaaagaaaaa acaacaatgc gagttgagtt agatgcatta gcaacattag
     7081 cggatttgtg gccgttatac caagaatgga aagcactcag taacaaagct tctgaaacaa
     7141 cagaagctac ttttccgcct gatggagtta ttcgtttaga acacttgaat ctccgagaaa
     7201 aagaatggca aaatcaactt atccaactag aagaacgcca aaaaaatcta attagcaaca
     7261 ataattatga acatagtgct ttttttgccg aaaatgaagc agaagttact tatctaatcg
     7321 aaacttatgc agcttttgga gagcgagaaa tccagttaaa gaatttaaag caagagatta
     7381 agtttcagca agtcgacaca aaacaaccac ttagaatatg gtcgagcgaa ttagaacaaa
     7441 caatgattca cttaaaagaa aaagaacagt cccacaaaga gcaacaacat gatatccagc
     7501 taaaattaaa attcactaat aactccgaag aaaaactcca aaaaaagatt gatcaaatag
     7561 aagcggagat gtgggataat aaaacattcc aacaagcaaa agaaaaaatg caggatagtc
     7621 ctaaaacttc taaaactaag acgatggttt ccttgggcat atttgcagta gcgttcgtct
     7681 tgatgatagt tttccaagct atttggagtg tagcacttgt ttttgtttct gcacttatag
     7741 tgggttatgc ttttattact actggaaaat cttctccaac aaataatgag caaattctag
     7801 cttttttaga acaaaagaaa ataagacaag aatggcaaca acttttgaac gaaatggata
     7861 tggttgcttc acaaattgct gaattaagag cagctgagaa taaactaagc gaaaatatct
     7921 accaacatac gatggaactt agacacttct tttctgactt gggaataaac actgaaccta
     7981 gttcgaactg gcattacgaa cttagcatct acaaaaaaaa cagtgaaaaa aggcaattag
     8041 caatggaact tatctccaaa ctagaaccat tagcagagaa gcaagaagca tatagagcaa
     8101 gattagaaaa cttaaaattg cctatagatt atacggacac ggaagaaaaa attacttttc
     8161 ttcgtcaagg tttgctctat tatcgaaacc acctaactga aaatgcaaag ctcgctgaaa
     8221 aattagaaca agtaacgatg caattagact tagttaaaca agatttatta cttgtaaaga
     8281 aagaaaaggc agacttgcta gaacgtgcga atgtgagtaa cgaagaagac tttcgtatgg
     8341 ctgcaatgcg cgtaaaagaa gaacagaagt ggcgtgaacg attagtttta atagaagcgc
     8401 aacttgaacc agaaaagcga gaagctctaa atagatatga aaatcaagca actatcaaag
     8461 aaaaagagct ccaattagaa gaatcactgc ggcaaataga attagaacaa gagcaacttc
     8521 acgcctcact cgcagcacaa aaccatgcaa tagacaaatt ggaagaaggc gggactttcg
     8581 ctgtattgat gcaagaattt tattcagaaa aaagcaaatt acaacaaatc tcagctgagt
     8641 ggacagaaac aaaactagcg cttcaaatgt tgcaaaacac gatgcagcag ttacaagaag
     8701 gaaaacttcc aaaaacatta aaactggcaa gtgaatattt taatcactta actagtggga
     8761 actataggaa agtatactta caagataata ggcttcaagt agaaagtaag gatagaattc
     8821 cgttcttccc ggaagaactt agccaagcga ctaaagagca gctatatttg gctattcgtt
     8881 ttgcgctaat tgatgttatt cacaaagact ttccactacc aatcattatt gatgatggat
     8941 ttgtgcattt tgattcctcg agaatggggc aaatgatgca gctgcttcaa aaacgaaaaa
     9001 gtgaaaacca agtcattttt ttcacatgcc atcaagaaac tcgcaaatat ttttccagtg
     9061 aggacatacg cgtgctataa tgggtgaaga aacttcttac tacagaaaga aagaaggcga
     9121 tataatggaa aaaagattat tagactttga agttggggaa acagtagact tattcttgct
     9181 aattaaatca agcgtaaaag gaacggctag caacggaaag cccttcttga gccttgtctt
     9241 gcaagataaa tcaggtgaat tagaggcaaa actatgggat gttaaagaaa gtgatgaagc
     9301 gaattacggg gtacaacaaa tagttcatct tatgggtgat attcaaaatt atcgtgggcg
     9361 aaaacaattg aaaatccgcc aaattagaca agctacagca ctggacggtg ttagtgctag
     9421 tgaattcatg gaaaccgcgc caattaataa agaagaaatg gctgatgaaa tcacacaata
     9481 tattttcgaa atgaaaaatg cgaatttgca acgaattacg cgcgcattgc ttaaaaaata
     9541 tcaagatgat ttttatgatt atccggcggc aatgcgtcat catcatgaat ttgtttccgg
     9601 cttgagtttt catgtagttt cgatgttacg acttgcaaaa tcagttgccg atctttaccc
     9661 atctgttaac cgagatttat tatacgcagg tgtgatttta catgatttag gaaaagtcat
     9721 tgagctttca ggccctgtat caacgacgta tacactagaa ggtaatttaa ttggccatat
     9781 ttctatcgta gtagaagaag tgagcaaaat tgcggacgaa ctttcgattg atggtgaaga
     9841 agtcgtagtt ttaaaacacg ttcttctatc tcatcatggt aaaggtgagt gggggagtcc
     9901 aaaaccaccg cttgttcgag aagccgagat tttacaccaa attgatttaa tggatgcttc
     9961 cttgaacatg atggataaag tactaaaaca tacaaaacct ggtgaattca gtgaacgagt
    10021 atttgggtta gataatcgtt cgttttacaa tcctatattt gaataaaaaa acacgcttgg
    10081 aaatttccaa gcgtgttttt tagtgcttat ttagatgagt cgctatcact ggatgaagag
    10141 ccatcaaaat ctttaaaagc atctttcaag tctttatctt ccacttttac gttagcatct
    10201 ttgtattctt ttttaagcgt tttttgcatg ttctcagtag ttagttgaga ctcaaggtaa
    10261 gaagctttta cagctttttt atctttttcg aaagttgttt ttgttgcagg tttgtccatt
    10321 tggatgatgt ggtatccgta ttgtgttttt actggagcgc tgatgtcgcc tttgttttta
    10381 agggcataag ctgctttttc aaatgcagga tccatcttac caggaccgaa tggagctaat
    10441 tgtccaccat tgtctttagt agcagtgtct gtagagtatt cttttgctaa atcagcaaat
    10501 tttgcgccgt ctttcagttt ttgttcaact tctttggctt tgttttcatc agctacaaga
    10561 atatggctta cagtaatatc tggttgccat gtttcatagt attttttaag tgttttgtcg
    10621 ctagtatcag tattggcttc agtagctttt tgaactaaca agttgtactt aagttggctt
    10681 ttgaatgatt tctccgttaa gccactttga gctaaaactg cagagaattg atctccgtat
    10741 tgtgatttat actcgttgaa tttcttatca acatcttcgt cgcttacttt gtatttatct
    10801 ccaagaattt tttcgaaagt aagttgttgt acaaactcag aaccatattt atctttcatt
    10861 gcgtcgtaaa gctcatcttg cgttacatcg ccagagtctg tcttaacgac atctccaccg
    10921 ccaccgcacg ctgctagact gaacaatgcc atcatcatga caagtccaag aattaatttc
    10981 ttcttcatta aataaaacac actccttagt tgttggaata attcccgctt aacacaataa
    11041 ctatcataac ataaattaaa ggt
//
LOCUS       DASDXX010000087        10976 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.087, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000087 DASDXX010000000
VERSION     DASDXX010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10976
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.087"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(551..895)
                     /gene="rplS"
                     /locus_tag="U0280_001693"
     CDS             complement(551..895)
                     /gene="rplS"
                     /locus_tag="U0280_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEM2271643.1"
                     /translation="MNKLIDEITKSQLNPDVPNFRPGDTVRVHAKVVEGTRERIQLFE
                     GVVIKRRGAGISETFTVRKISNSVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYLRN
                     LRGKAARIKEIR"
     gene            1104..1538
                     /locus_tag="U0280_001694"
     CDS             1104..1538
                     /locus_tag="U0280_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2271644.1"
                     /translation="MEQWTVKEMAAYVGISADTLRYYEKNKIIVPNRLENGYRVYNTE
                     HLLELKFILVMKYARFSLSEIKLMMEWLRSEPSVACNTASKELLALKAAEIKQTIAHY
                     TKIAALLEELPQIDEVQDYSTVQKDVNTFVEHIFTDIRKDGF"
     gene            1538..2149
                     /locus_tag="U0280_001695"
     CDS             1538..2149
                     /locus_tag="U0280_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM2271645.1"
                     /translation="MAKIVAIIGDPREKGTSRDLFQKYLAVFQEQPTIEVKIYDIRKL
                     AFDPNLPEGYRTEQTPDIIALKNDVRSADLLLFSYPVWWFNVPAVLKGVIDHLFWPGE
                     SYSFKDKKYFLTGPWRKKRARLIYTIGGMEIQHRLFARPALTALRYPLWMSGVFSVKV
                     TSIDRLDLSIRRTDDYYDKKVTRAAKRDIQFLLKKQIRKKVFA"
     gene            2146..2862
                     /locus_tag="U0280_001696"
     CDS             2146..2862
                     /locus_tag="U0280_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2271646.1"
                     /translation="MKITAKHQYWQITTLPYLFPVNCYLILEKDGLTLIDTGILSNAK
                     GIIALIHKLNLPLKRILLTHAHGDHIGGLVAVKAAFPEALVMIGSREKLLVETKEIYA
                     FEAQKPLKGGYSDQLPVSIDHILKDGDMIGSLLIIDTPGHTPGSISFFDERNGHLFVG
                     DLFQTRGGAAICGEKRWLFPFPAMGSWDLPTSIASAENLQLFDVTEIACGHGPVKAMA
                     DFDLTNVLKRAKKQATNEKD"
     gene            complement(2893..3282)
                     /locus_tag="U0280_001697"
     CDS             complement(2893..3282)
                     /locus_tag="U0280_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271647.1"
                     /translation="MAIFGTPDEKETKKSERQKEREAYVQEENDQKRIGQRWQDIQVS
                     TGPINVNHDILTVVFAKSVRPRIKSDPEAYLETVGFENLLQELQKKALDAGGNGLIHC
                     SFTEQFVDGLVYQLAYGTAVNIKITRF"
     gene            complement(3302..4039)
                     /gene="trmD"
                     /locus_tag="U0280_001698"
     CDS             complement(3302..4039)
                     /gene="trmD"
                     /locus_tag="U0280_001698"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEM2271648.1"
                     /translation="MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEG
                     KHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFDQKMAEE
                     FAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGV
                     LGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTY
                     ERRPDLLKNYPLTDKQKTWLKEWSDSK"
     gene            complement(4039..4557)
                     /gene="rimM"
                     /locus_tag="U0280_001699"
     CDS             complement(4039..4557)
                     /gene="rimM"
                     /locus_tag="U0280_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEM2271649.1"
                     /translation="MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEK
                     NSKKPEKLIIRSHRKHKNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYF
                     HEIIGCIVVTTDGEELGEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDK
                     KITIEVMEGLLD"
     gene            complement(4567..4953)
                     /locus_tag="U0280_001700"
     CDS             complement(4567..4953)
                     /locus_tag="U0280_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlqD family protein"
                     /protein_id="HEM2271650.1"
                     /translation="MEIIQKVVVKQILTEASKQELIEYYTEQKRQIEQECDQLHFEQK
                     KMERKSKFQPERVADYFTHELDLRREKKKLIQFQMEQLEVLELGSEIREREMETIIDV
                     QVGDKWDKSIFDKTIVVKDGIIVEIR"
     gene            complement(4981..5715)
                     /locus_tag="U0280_001701"
     CDS             complement(4981..5715)
                     /locus_tag="U0280_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM2271651.1"
                     /translation="MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIA
                     LPIDDPSVAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAA
                     LDAGKPIFAICRGMQLVNVALGGSLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTS
                     ELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPE
                     LMFQTDPESEQLFRALVDESKKTMVK"
     gene            complement(5826..6056)
                     /locus_tag="U0280_001702"
     CDS             complement(5826..6056)
                     /locus_tag="U0280_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEM2271652.1"
                     /translation="MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRV
                     IGKQGRIAKAIRTLVYAVGSKNDKKIRLEIIE"
     gene            complement(6073..6345)
                     /gene="rpsP"
                     /locus_tag="U0280_001703"
     CDS             complement(6073..6345)
                     /gene="rpsP"
                     /locus_tag="U0280_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEM2271653.1"
                     /translation="MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLL
                     DPVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLGK"
     gene            complement(6448..8106)
                     /locus_tag="U0280_001704"
     CDS             complement(6448..8106)
                     /locus_tag="U0280_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(glycerol-phosphate)
                     alpha-glucosyltransferase"
                     /protein_id="HEM2271654.1"
                     /translation="MPWRGILDELENKIIDQLTEDEEHATYNGKWHGFLTIGYKNKRA
                     IVINFSYLCLANLINEMKKSAIKNQTEEAISFKIDVAVDYRLENLGEWNKKALKTKKN
                     YYRRGIALNENFKIALMEQEINANAILLPGDEGLAINVENMNRYLIQTNKNQAQLNLT
                     VDSTIVTFNTVGWFFDGKKIHELEPSELEHGRRSTKQLTPDAVFELVGNAGNYLVSQV
                     NQTGEFNYGWFACFDKKIKHYNSLRHASTTYSMLEAYELTGDKTILEAATSTLTYLEQ
                     NFIYEKDELAFLIEPGLREVKLGGSAATLLALTKYMKITGTKTYLPLSRKIANAIISL
                     QEENGKFTHVLEYPSLEVKDIFRIIYYDGEAVFGLLRLYEIDRDSKWLEAAAKSFDHF
                     IRDDYWQNHDHWLSYCANEITKYIPDEAYYEFGMKNAFDNLPFIYGRETTFPTFLELT
                     VATKEMSLRMETEDLQKLLHDYPLAELEKTITKRAIYQLNGYFYPELAIYYKNPARID
                     GSFFIRHQSFRVRIDDVEHNISGYVRYHHLLKQGKLSAEAETVK"
     gene            complement(8180..10741)
                     /locus_tag="U0280_001705"
     CDS             complement(8180..10741)
                     /locus_tag="U0280_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2271655.1"
                     /translation="MKKQRVDYKRRLDQKRAQKAKLIAALITTTTMMVAPVTVNYDSF
                     NHQFALSGIQADAATIDLLGNSNLNTQYSNGKLVITLSGNQLVSASAVSTYYPYFELP
                     SELSSILSNPNIRANTKIDYKIAYLGIGGIGLFNQGTVNGSNSSNFFIDSSRNAVGAK
                     VNHLLGVGVGSISTFTLTIDLLALGVTALPSANDGKLDFAARTGDGLLDVDLLNSNAA
                     RGFITTDVGDADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADVDIDWRDFLVEKPT
                     VNPIYEGTKTISGTSIYKNMNINTLLKSLQSDAPAGTTFYINLTLPDGTVIGNVLIHA
                     DGTYTINIPNYNLKAGDVIHLQVTAKYGNEVKTSEDVAVTVLPLADSDADADADADAD
                     ADADADADADADADADADADADADADADADGGSNPSTNGGTTGTSNGGTGVTVTNMSS
                     NGSGTMLSSGYSADGTTSISASDLPSTGDTNSSLPWVGLGLFSLAGAFLLRLFRK"
BASE COUNT         2971 a         2415 c         2101 g         3489 t
ORIGIN      
        1 cgtatttttt gcataaaaaa aagcctcgtt tgacaaggct ttttttctat ttatttgcaa
       61 tttttctcaa taagtataag aagtaaacca ctgccgcaac aatagctatc ttgaaactac
      121 atatatgaaa ccccaaaaat cagctgctcc catattacac ctcactctcc acagtattta
      181 taactatgta ctattcttgc ctgttttttc tttttgtcta atgaagttaa ctttcttgta
      241 cttcttaatt caaagtatct ttttgaacca tacgcttgta tagtatacca tcccggacca
      301 tgtaagtcat acccaacttt ccgcgcatat ttatctgtcg ttttggtttt ggcggactct
      361 actttctatg ccgcagtatc ccaagcccca cctttgaagt gtaacgcata atttgacaaa
      421 acgattttcc ctattggaac acccccactt ttgtaagtaa aaacgaaagg tgaaaatttc
      481 acattttagc attctaattc caagcaaaac aaaaaccctt gatttctcaa gggtttcagc
      541 cgttaaatga ttaacgaatt tctttaatac gagccgcttt accacgtagg ttacgtaggt
      601 agtaaagttt cgcacgacgt actttaccac gacgaataac ttctaatttt gcgatacgtg
      661 gagtatgtac tgggaaagta cgttccacgc caacactgtt agaaatttta cgaacagtga
      721 aagtttcgct gattccagct ccgcgacgtt tgattacaac gccttcgaat aattggatac
      781 gttcgcgagt accttcgact actttcgcat gtacacgtac agtatcaccc ggacggaaat
      841 ttggaacatc tgggtttagt tgactttttg tgatttcatc aatcagtttg ttcatgtttt
      901 tctctccttc caacaaacat tcattcatat taataatgaa gcggaatatc gttatcagac
      961 tggtctctcc agtcacctta tttaggttac cataaactag tttcgctgta aagttttttt
     1021 cttacttttt cttttgataa aaaagcttga ccttggagta tggtttaatg ttacctttag
     1081 tatatcaaat ggaggtgtca gagatggaac aatggacagt aaaagaaatg gctgcttatg
     1141 taggtatttc agcggataca ttacgatatt atgaaaaaaa caagataatt gtacctaatc
     1201 ggctggaaaa cgggtatcgt gtgtataaca cggaacatct attagaatta aagtttattt
     1261 tagtaatgaa atatgcccga ttttctcttt ctgaaataaa attgatgatg gaatggttga
     1321 gaagcgagcc ttctgtcgct tgtaatacgg catcaaaaga gttacttgcg cttaaagcag
     1381 cggaaatcaa acagacgatt gcacactata caaaaatcgc tgctctttta gaagaattgc
     1441 cgcaaattga cgaggtccaa gattacagca ctgttcaaaa agatgttaac acttttgtgg
     1501 agcatatttt tactgacatc agaaaggacg ggttctaatg gctaagattg tggcgattat
     1561 tggtgaccca cgggaaaaag gtacatcaag agatttgttt cagaagtatt tagctgtttt
     1621 tcaggaacaa ccaacaatcg aggtaaaaat ctatgatatc cgcaaattag cttttgaccc
     1681 taatttacct gaaggctatc gtacggagca aacccctgac ataattgcgc ttaaaaatga
     1741 tgttcgttcc gctgatttac ttctattttc ttatccggtt tggtggttta acgttccggc
     1801 tgtgttaaaa ggtgttattg atcatttgtt ttggcctggg gagagctata gttttaaaga
     1861 taaaaaatat tttcttactg gaccttggcg aaaaaaacga gcgcggttga tttatacgat
     1921 tggcggaatg gaaatacaac atcgactttt cgcccgccct gctcttactg ccttgcgtta
     1981 cccattatgg atgagtggcg tgttttcggt gaaagtgact tcaattgatc gactggatct
     2041 ttctatcaga aggactgatg actactatga taaaaaagtt acacgtgcag caaaacgcga
     2101 tattcaattc ttgctaaaaa agcaaattag aaagaaggtt tttgcatgaa aattactgcc
     2161 aaacatcaat attggcaaat tacgacattg ccgtatcttt ttccggtgaa ttgttactta
     2221 attttagaaa aagacggctt aacattgatt gatactggga ttttgtcgaa cgcgaaagga
     2281 atcattgcac tcatccacaa attaaattta cctttaaaac ggattttatt aacgcatgcg
     2341 catggtgacc atattggcgg tttagtcgca gtgaaagcag cttttccaga agcgcttgta
     2401 atgattggaa gcagagaaaa attgcttgta gaaacgaaag aaatttatgc ttttgaagca
     2461 cagaagccgt taaaaggcgg ttattcagat caacttccag taagcattga tcacatttta
     2521 aaagatggtg atatgattgg ctccctgtta attatcgata cgccgggaca tacacctggc
     2581 tccatttcct tttttgatga gcgtaatggg catttatttg taggagattt atttcaaact
     2641 cgtggaggag cggctatttg tggggagaag cgatggttgt tcccttttcc agcgatgggt
     2701 tcttgggatc ttccaacaag tatcgcatcg gcggaaaatt tacagctttt cgatgtgacg
     2761 gaaattgctt gtgggcatgg accggtgaaa gcgatggctg attttgactt aacgaatgta
     2821 ctaaagcgag caaagaaaca agcaacaaat gaaaaagact agaaaaccaa ttactggctt
     2881 tctagtcttt ttttagaatc tcgtaatttt gatgtttacg gctgttccat atgcgagttg
     2941 ataaacgagg ccatcgacga attgctcggt aaacgaacag tgaattaagc cattcccgcc
     3001 tgcatctaat gctttctttt gtaattcctg tagtaaattt tcaaagccca ctgtttctaa
     3061 gtatgcttct ggatcacttt tgattcttgg gcggacactt ttggcgaaaa caaccgtgag
     3121 gatatcatga ttcacattaa tcggtccagt ggaaacttgt atgtcttgcc atctttgccc
     3181 aattcgcttt tggtcatttt cttcttgtac ataggcttct cgttcttttt gacgctcgga
     3241 ttttttggtt tctttttcat caggtgttcc aaaaattgcc atttaaaatc acgtcctttg
     3301 attatttact gtcagaccat tctttgagcc aagttttttg cttgtctgtt aagggatagt
     3361 ttttaagtaa atctgggcgg cgttcgtagg ttcttttgag cgattctttg tcgcgccatt
     3421 cttctatcca tgcatgattt ccgctgagta aaatatctgg cactttcatt cctctaaaat
     3481 cggctggtcg cgtgtagtgt ggatgttcaa gcaaaccggt cgagaaagaa tctgtcacag
     3541 cggaatcttt attaccaagt actcccggta aaagtcggat aacactgtcc attacaatca
     3601 ttgcaccaat ttcgccacca gttaaaatgt aatctccaat cgacacttca tccgtaacaa
     3661 ggtgttcgcg aattcgttcg tcgtaacctt catagtgacc gcaaataaaa acaagatgct
     3721 cttcttcggc aaattcttct gccatttttt ggtcgaagcg tttgcctgct gggtccatta
     3781 aaataactct tggctttgtt tctggttgtt tctctttgac agcttgaacg gcatcaaata
     3841 tcggttgcgc tttgagtaac atacctgccc cgccaccata agggtaatca tcgacaatat
     3901 gatgctttcc ttctgcatat tccctgaaat cagtcacttc aaccgcgaca cgctcatttt
     3961 cgatggcttt ttttataatg gaatttccgg tcactcccga aaacatatct gggaaaatgg
     4021 atagaatgtc aattttcatt aatctagcag tccttccatg acttcgattg taattttttt
     4081 gtcattaata ttgatttctt ttacaacgtc ggcaatataa ggaattagtt tttctttttt
     4141 gtcgctgcct tttacaaccc atacatcatt ggcgcctggt gttagaattt ctgtgatttc
     4201 gccaagctct tcgccgtcag tagttacaac gatacaaccg atgatttcat gaaaataaaa
     4261 ttcgttttcc tctaaatcag ttagttgcgc ttctttgatt ttaagtacgc cttctttcat
     4321 acgttccact tgatgaattc cagtgaatcc ttcaaacatc agcaaatcaa agttcttatg
     4381 tttgcggtgt gagcgaatga ttagtttttc aggctttttg ctgttttttt caaataagta
     4441 cacggtattc ccaacttgga accgttcttc tggaaaatcg gtcgttgcga taactcgaat
     4501 ttcaccgatt aagccatgag tattaacaat ttttcctaca ttatacattt tctccataag
     4561 tcacctctag cgtatttcta ctatgattcc atcttttaca acaatggttt tatcaaaaat
     4621 ggatttatcc cacttgtctc ctacttgtac atcaataatc gtttccattt ctcgttcgcg
     4681 aatttcactg ccaagttcga ggacttctaa ttgttccatt tgaaactgaa ttagtttttt
     4741 cttttctcgg cgcaggtcga gttcgtgggt aaagtaatcg gccactcgtt ctggttgaaa
     4801 tttgcttttt cgttccattt tcttttgttc aaaatgcaac tgatcgcatt cttgttcgat
     4861 ttgtcgtttt tgctcggtat aatactcgat taattcttgt ttacttgctt cggttagaat
     4921 ttgtttgacg acaacttttt ggatgatttc cactggacac ctccactagc gattatgtcc
     4981 ttattttacc atagtttttt tggattcatc tactaatgcc cggaataatt gttcactttc
     5041 cggatctgtt tggaacatta attctgggtg ccactgaaca cctaaatacc aacttggcaa
     5101 attgtcacct tctacagctt caatcattcc atccgcagta cgcgctgtta ctttaaaact
     5161 tggcgctaat tttttgataa attggtgatg caatgaattg actaattttt tattcgggtg
     5221 atgctttgcg agttcacttg tcggttcaat atcaattgta tgagagccga gttgttcatc
     5281 gacgcgctgc aaatgttgga gggctttcgt ttcgacttgg ctgatatctt gataaagtga
     5341 gccgcctaac gccacattaa ctagttgcat cccgcggcaa atagcaaaaa tcggttttcc
     5401 agcgtctaat gctgctcgaa ctaaggcgat ttcatagctg tcccgaggtg gaaaataagc
     5461 gccgatttct tgggacggct cttctaaata aaattgtggc gtaatgtctt gtccaccggt
     5521 taaaagcaaa ccatctacga gagaaattgc ttgaacggca acagacgggt catctattgg
     5581 caaagcgata ggaaatccgc caactttttg aatagcatct acatatcgct gttgcgtata
     5641 agtcacacgg tgtccgtaaa aaacgtccac accttttact aatctatttc cggtaattcc
     5701 aataactggc ttcatcacaa ttcctccatt tctattctat tttacaacat ttagtgaggt
     5761 aattgcttct ctgatgatta tttaaaaata gttataaaaa aactcgccaa attgacgagt
     5821 ttttgttatt cgataatttc aagacgaatc ttcttatcgt ttttggagcc aactgcgtag
     5881 acaagcgtac gaatcgcttt cgcaatacga ccttgcttac caatcacgcg tcccatgtct
     5941 tctttactga cagacaattt gtaggttaac gatgtatccg tttcttctgg cgtgataaca
     6001 acgtcttccg ggtggtcaac aagaggtttc acgattgaga gaatgagttc ttccattcgc
     6061 gccgagacct ccttatttac ctaatttttg gttatggaat ttttccatga taccttcgcg
     6121 gctaagaaga ttgcgaactg tatcagatgg tttcgcacca ttatgcatcc atttcaaagt
     6181 tgcttcttcg tcgattttca cttcaaccgg atcaagtaat ggattataag taccaatagt
     6241 ttcgattgaa cggccatcac gtgggaaacg agaatcagcg actacaatac ggtagaaagg
     6301 tttcttttta gaaccaatac gttttaaacg aattttaact gccatagttt aattacacct
     6361 ccataaagtc ttacacaagt atatatatta ccagtaaagg atttgtttgt aaagtgtttt
     6421 ttctttacag agggaatttt tttcttttta tttgacggtt tcggcttcag cacttagttt
     6481 cccttgtttt agaaggtggt ggtaacgcac atatcctgaa atattatgct ccacatcatc
     6541 aattctaacc cggaaagact ggtggcgaat gaagaaactg ccatctattc gcgctggatt
     6601 tttgtagtag attgctagct ctgggtaaaa atagccattt aactggtaga tagctcgttt
     6661 agtgattgtt ttttccaatt cagctagtgg atagtcatga agcagttttt gcaagtcctc
     6721 tgtttccatc cgtagcgaca tctcttttgt agcaacagta agctctaaaa aggttggaaa
     6781 tgtggtttcg cgtccataaa taaatggtag gttgtcgaaa gcatttttca ttccaaattc
     6841 gtagtaagct tcgtctggaa tatatttagt gatttcattg gcgcagtagc tcagccagtg
     6901 atcatggttt tgccagtagt catcacgaat gaaatggtca aaagattttg ccgctgcctc
     6961 cagccatttg gaatcacggt caatttcata taagcgcaac aagccaaaca cagcttcccc
     7021 gtcgtaataa ataatccgga aaatatcttt tacttctaaa gagggatact ccaacacatg
     7081 cgtgaacttc ccgttttctt cttgtaagga aataatcgca ttcgcaatct tcctagatag
     7141 tggcaaatag gttttagttc cagtgatttt catatatttc gttaaagcaa gcaatgtcgc
     7201 cgctgaaccg cctaatttaa cttcacgcaa ccctggttca attaaaaaag ctaattcgtc
     7261 tttttcataa ataaagtttt gctctaaata agttaaagtg cttgtagctg cttccaaaat
     7321 tgttttatcg cctgttaatt cgtatgcttc taacatcgaa taagttgtac tcgcgtggcg
     7381 caaactatta tagtgtttaa tttttttatc aaagcaagca aaccagccgt aattgaattc
     7441 gcccgtttga tttacttggc tcactaaata atttccagcg tttccaacta gttcaaaaac
     7501 tgcatctgga gttaattgtt tagtacttct acgaccatgc tcaagctcgc ttggttctaa
     7561 ctcatggatt ttctttccgt caaaaaacca tcctactgta ttaaaagtaa caatagtgga
     7621 atctacggtt aagtttaatt gagcttgatt tttatttgtt tggattaaat atctattcat
     7681 attttcaacg ttgatagcta aaccttcatc acctggtaga aggatagcgt tcgcattaat
     7741 ttcttgttcc attaaagcta ttttaaaatt ttcatttaag gcaatgcctc ttctataata
     7801 atttttcttc gtttttaaag cttttttatt ccattctcct aaattttcaa gtcgataatc
     7861 cacagcaaca tcaattttaa aagaaattgc ctcttcggtt tggtttttta ttgcactttt
     7921 tttcatttca ttaattaagt tggctaggca aagatagcta aagtttatga caatagctcg
     7981 tttattttta tagccgattg ttagaaagcc atgccatttc ccgttgtaag tggcgtgttc
     8041 ttcgtcttct gttaattgat caataatttt attttcaagt tcatctaata tacctctcca
     8101 aggcatatgt accactcctt tttataatat ccctgccgct aaattttctt agcgacaggg
     8161 aatcgttgta ttgtggctct tatttacgga aaagacgtag taaaaacgcg ccagctagcg
     8221 agaagagacc aagcccaacc cacggaagac tactgtttgt atctccagtt gaaggaagat
     8281 cacttgctga gatagaagtt gttccatccg cgctataacc tgaggaaagc attgttcctg
     8341 aaccatttga actcatgttc gtaacggtta cgccagttcc tccgttagaa gttccagtag
     8401 ttcctccatt ggtagaagga tttgatccac catccgcatc ggcatcagca tcggcatcgg
     8461 catccgcatc ggcatcagca tccgcatccg catccgcatc cgcatcagcg tcggcatccg
     8521 catcagcgtc ggcatccgca tcagcgtcgg catcagaatc tgctaatggt aggacagtta
     8581 cggctacatc ttcactcgtt ttaacttcat taccatattt agctgttact tgaagatgaa
     8641 taacatctcc agctttcaaa ttataattag gaatattaat agtataggtt ccatctgcat
     8701 ggattaagac atttccgata acagtaccgt ccggaagagt caaattaata tagaaagttg
     8761 ttccagccgg tgcatctgat tgcaatgatt tcagaagggt atttatattc atatttttat
     8821 aaatggaagt acctgaaatt gttttagttc cttcgtaaat tggatttaca gttggttttt
     8881 caactaggaa atctctccag tcaatgtcta cgtcggcatc ggcatccgca tcggcatcgg
     8941 cgtcagcatc cgcatccgca tcggcatcgg cgtccgcatc cgcatcggcg tcggcatccg
     9001 catcggcgtc agcatcagcg tcagcatccg catcggcatc ggcgtccgca tccgcatccg
     9061 catcagcatc agcatcagcg tcggcatcag cgtccgcatc agcgtcggca tccgcatcag
     9121 cgtcggcatc cgcatcagcg tcagcatcag cgtcggcatc cgcatcagcg tcagcatcag
     9181 cgtcggcatc cgcatcagcg tccgcatccg catcggcatc cgcatcagcg tcggcatccg
     9241 catcagcgtc cgcatcagcg tcggcatccg catcagcatc agcatcagca tcagcatcag
     9301 cgtcggcatc agcatcagcg tcggcatccg catcagcgtc cgcatccgca tcggcgtcag
     9361 catccgcatc agcgtcagca tcggcgtcag catccgcatc cgcatcagcg tcggcatccg
     9421 catcagcatc agcatcagcg tccgcatcag cgtcggcatc cgcatcagcg tcggcgtcag
     9481 cgtcagcatc agcatcagca tccgcatcag cgtcagcgtc agcatcggcg tcagcatcag
     9541 cgtcggcatc cgcatcagcg tccgcatcag cgtcggcgtc cgcatcagcg tcggcatccg
     9601 catcagcgtc ggcatcagcg tcggcatccg catcagcatc cgcatcagcg tcggcatcag
     9661 cgtcggcatc cgcatcagca tcagcatcag catcagcgtc agcatcagcg tcggcgtcag
     9721 catcagcatc ggcgtcagca tcggcgtcag cgtcagcatc agcatcagca tcagcgtcag
     9781 catcagcgtc ggcgtcggcg tcagcatccg catcggcgtc agcatcggcg tcagcgtcag
     9841 catccgcatc ggcgtcagca tcggcgtcag catcagcgtc ggcgtcggca tccgcatccg
     9901 catccgcatc agcgtcggca tcagcatcag cgtcagcatc cgcatccgca tccgcatcgg
     9961 cgtcggcatc agcgtcagca tcggcgtcag catccgcatc ggcgtcggca tcagcgtcgg
    10021 catccgcatc agcgtcagca tcggcgtcag cgtcggcatc cccaacatcc gtagtaataa
    10081 acccacgagc cgcattacta ttcaacagat caacatccaa aagcccatca ccagttctag
    10141 cagcaaaatc taattttcca tcattggcac taggtagcgc agttacgcca agcgctagca
    10201 aatcaattgt caaagtgaaa gtagatatac taccaactcc aactcccagt aagtgattta
    10261 cttttgcacc aaccgcattt ctactagaat caataaagaa attgcttgag ttacttccat
    10321 ttactgtacc ttgattaaat aatccaatac cgccaattcc taaataagca attttataat
    10381 caattttcgt atttgctctt atatttggat tacttaaaat agaagaaagt tcacttggta
    10441 gttcaaagta tggatagtac gtggatactg cactagcact aactaactga ttcccagaaa
    10501 gagtaatcac taatttccca ttagaatact gtgtattcaa attagaattt cctaataaat
    10561 caattgttgc cgcatccgct tgaataccac ttagggcaaa ttggtgatta aaagaatcgt
    10621 aattcacagt gacaggcgct accatcatcg ttgttgtcgt aataagcgcc gcaattaatt
    10681 ttgctttttg cgctcgcttt tggtctaatc tccgtttgta atctacacgc tgttttttca
    10741 tcatttttcc cccttaaaaa tcaatcgttc ttgattttga aaaataactg aaaacagaat
    10801 aaaggtatta aattatgttt tcctaataag ctaactatta agtatcccct gaacctttat
    10861 ccaatatcag attccaacca tttcagccca atgtccctcc cttcgttttc ggacctaaca
    10921 ttagctgtta taacccgtta gataacttta ctatatagta tatttttaaa aattaa
//
LOCUS       DASDXX010000088        10846 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.088, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000088 DASDXX010000000
VERSION     DASDXX010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10846
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.088"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..666)
                     /locus_tag="U0280_001706"
     CDS             complement(<1..666)
                     /locus_tag="U0280_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM2271656.1"
                     /translation="MNTNRKKATPLFVIGGFCLILFITIASAIATESNWVARFDLSWI
                     EKIRGGIQPDKTAIVKFLTTLGSAETTIILTIVVVLILFFLRKFVVGLWFGGTMLVCG
                     VVLNLVLKSLVGRTRPASVNWLVSESGFSFPSGHATATAVFYGLAAMFLIFIVPKMWQ
                     KIVIGIIGYGFILFVMYTRVYLGVHFPTDVLGGFFLGTASVFISLGVYFLVRKPLHNL
                     LVKW"
     gene            complement(680..1669)
                     /locus_tag="U0280_001707"
     CDS             complement(680..1669)
                     /locus_tag="U0280_001707"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEM2271657.1"
                     /translation="METIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDR
                     KHSLGGADGILYVTKSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDA
                     KVETMKAILDVKKATSLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAE
                     LAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAI
                     YVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGE
                     ISLQLIGNATFVSKGSVRYENDVVTELTNEATAEQAQYQALVKEVKEFLKTTE"
     gene            complement(1781..4546)
                     /gene="ileS"
                     /locus_tag="U0280_001708"
     CDS             complement(1781..4546)
                     /gene="ileS"
                     /locus_tag="U0280_001708"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM2271658.1"
                     /translation="MEYKDTLLMPKTDFPMRGNLPNKEPEWQAKWEEEKLYEKIQEKN
                     AGRKAYILHDGPPYANGELHMGHALNKTIKDIIVRYKSMAGFSSPYVPGWDTHGLPIE
                     TAIAKKGVKRKEMSIAEFRKLCAEYAMTQVDGQRTGFKRLGINGDWENPYITLLPEYE
                     AEQIKVFGEMAKKGYIYKGKKPVYWSPSSESALAEAEIEYQDKKSASIFVAFKVTDGK
                     GVLDEGTNIVIWTTTPWTIPANMGITVNPDLDYVVIESAGEKYVVAEALLPSLREKLG
                     FEDATVVKTVRGSELDRVVTKHPFYDRDSLVMNGEHATAEAGTGAVHTAPGHGEDDFL
                     IGKKYDLEVLAPLDDHGVFTEEAPGFEGVFYDTANKMVTEKLEEVGALLKMEFITHSY
                     PHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWV
                     ISRQRAWGVPLPIFYAENGEAIITDETINHISELFREHGSNVWFERDVKDLLPAGFTH
                     PGSPNGEFTKETDIMDVWFDSGSSHQAVLNARPELSRPADLYMEGSDQYRGWFNSSLT
                     TAVAITGEAPYRNVLSHGFALDGEGRKMSKSLGNTLLPGKVIKQLGADIVRLWVASVD
                     YQADVRVSDEILKQVSEVYRKIRNTMRFLLGNINDFNPTTNAVSYENLREVDKYMLIK
                     LNDLVKNVKDNYEAFEFSTIYHQINNFCTVELSQFYMDFAKDVVYIEAADSHDRRAMQ
                     TVFYEAVVTLTKLLAPILPHTTEEVWNSLIGEGVESIHLQDLPEVKVLADSEEITAKW
                     DAFMQIRDNVQKALEFARNEKLIGKSMLAKVTLYVDGEAKTLFDSLEGDFAQLFIVSD
                     FELVEGLENAPESAFKSNQVAVQITVAEGETCERCRVVKKDVGVNPKHPTLCGRCADI
                     VVKHYEA"
     misc_binding    complement(4599..4832)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            complement(4829..5356)
                     /gene="divIVA"
                     /locus_tag="U0280_001709"
     CDS             complement(4829..5356)
                     /gene="divIVA"
                     /locus_tag="U0280_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein DivIVA"
                     /protein_id="HEM2271659.1"
                     /translation="MPLSPLDIHNKEFTRGFRGYDEDEVNDFLDQIIKDYEQVIKEKK
                     RIEDTLNNSEERLGHFTNIEETLNKSLIVAQTAAEEVKASAEKEAKLIIREAEKNADR
                     ILSDSLSKARKIAIEIEDLKRQSKVFRERLRMLVEAQMDLIKSEDWQQMMAYDVDATE
                     LASIKEVEAAESEER"
     gene            complement(5452..5973)
                     /locus_tag="U0280_001710"
     CDS             complement(5452..5973)
                     /locus_tag="U0280_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor NadR"
                     /protein_id="HEM2271660.1"
                     /translation="MKKILGDTRRQMILKWLKEAEAPISGNQLAQKTNVSRQVIVQDI
                     SLLKAGNEPIMATPQGYIYAKETSYTGERRVIAVKHTKEQAAEELNILVDHGVSIIDV
                     IVDHPIYGEITASLHLKSRFDVEKFVRKLQTTGATMLSGLTDGTHLHTIEADTKEQLE
                     QAIKALDKAGFLI"
     gene            complement(5978..7084)
                     /locus_tag="U0280_001711"
     CDS             complement(5978..7084)
                     /locus_tag="U0280_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2271661.1"
                     /translation="MIYFDHAATTKMSEASLQVFMDASREFFANSESLHDAGTKSAAL
                     LEKCRESFSELLQVPNRGILFTSGGTESNQIAIQTLIHTTDKKEVLVSPLEHASVWQQ
                     LMALEQAGKCRIKVLPVDSFGQVNPATLEKMISAETGLIIIQHVNSEIGTIQPIAELA
                     HIAKKAGVFFHTDIVQSFGKIDLDLSDATSFSISSHKIYGPKGAGILFMKPDSPLQAV
                     LPDVHHEFGFRPGTVNVPAIAAFTTAAYDIIENREQEAIRAMKLKAAICDTLEARVEV
                     EGGPNTSPYILGLTLPNMQGQEALLALNEADIQISTTSACSLRDLAPSRTLIATGKTT
                     EEANRFIRLSFGRENELNDSIIFKEEIDKLLRKR"
     gene            7216..8670
                     /gene="nadB"
                     /locus_tag="U0280_001712"
     CDS             7216..8670
                     /gene="nadB"
                     /locus_tag="U0280_001712"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HEM2271662.1"
                     /translation="MTKERVIIIGSGIAGCTAAFRLMHDYDVTIITKGLKEESNSMLA
                     QGGVAAAVSKNDTPKKHFSDTFQAGCFHNKVLAVNQLVTNGPIVIQKLIAEGMTFDEQ
                     NGELSLGLEGAHQLPRILHTGGDQTGKFLTTFLQEKLTNIHWQEQKMAIEIIKQNDSA
                     IGVHCLDKENRLHTYYGEHIILASGGLGQLFPVTTNAATISGDGLALAYRAGAKLTDM
                     EFIQFHPTLLFLNGRCHGLISEAVRGEGAKLIRADGSAVMTDVHPRADLAPRDIVAAT
                     LFAEIQDGNEVFLDITPIPNFEERFPGITANLDAYHVPFRETKRIPVHPGAHFLMGGI
                     RTDLSGKTNIPGLYAIGEVANAGVHGANRLASNSLLETLVFGEKVAEYILTQKTNLID
                     HPEIPLSNQTRTPHLPDKQLLQEKIWETLGITRKPEKITEFLHWLTDFDYANHTRETA
                     EISHMLITAKIIAESALKRTESLGAHRILKGVIK"
     gene            8667..9512
                     /gene="nadC"
                     /locus_tag="U0280_001713"
     CDS             8667..9512
                     /gene="nadC"
                     /locus_tag="U0280_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEM2271663.1"
                     /translation="MNSILMNQAIQAFLLEDIGQHDLSAETVFPRDTMGEGVFLAKET
                     GILCGISIPPKVYELLGGNIQFEAYKKDGDWIQKGDIIAAVTAPVRTLLSGERVILNL
                     MQRMSGIASQTNFAVKQLDDSAIRICDTRKTAPGLRAFDKYAVQTGGGFNHRNGLYDG
                     VMLKDNHIAFSGGITSAVSTVREKLGHMVKIEVETETAEQVKEAVQAGADIIMFDNRT
                     PEEIKQLVKLVPPHITTEISGNVTLENIHRYKGSGANYLSLGSLTHSVRAFDISFNSK
                     GGIKA"
     gene            9509..10609
                     /gene="nadA"
                     /locus_tag="U0280_001714"
     CDS             9509..10609
                     /gene="nadA"
                     /locus_tag="U0280_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEM2271664.1"
                     /translation="MNLLETVEQDTMPTHYKQMTQAEMIARVTEIKAQLGENLFIPCH
                     HYQKDEVVPFADAIGDSLQLAQIAAQNKKAKHIVFCGVHFMAETADMLTTSEQIVTLP
                     DMRAGCSMADMADIHQLTNAWPKLQTLFGDTILPVTYINSTAAIKSFVGEHGGTTVTS
                     SNATKIVSWALEQKERIFFLPDQHLGRNTAFELGIPLEHMAIWNPIKNELEYEGNLDD
                     CKVILWKGYCSVHQHFTVKNIENIRKNNPKMRIIVHPECTHEVVSLADDSGSTKKIVT
                     EINNAAPGTEWAVGTEANLVGRIIQENPDKKIVSLNPFMCPCMTMNRIDLPHLLWTLE
                     AIQNGEQRNQIKVDKQTTKFALKALERMLQLS"
BASE COUNT         3207 a         2352 c         1968 g         3319 t
ORIGIN      
        1 ccatttcaca agtaaattat gtaatggttt tcgtactaag aaataaacgc ctagtgagat
       61 aaataccgat gctgtaccaa ggaaaaatcc accaagtaca tccgtcggga aatgcacacc
      121 aagataaacg cgtgtataca tgacaaacag gataaaacca taaccgataa taccgataac
      181 gattttttgc cacatttttg gcactatgaa aatcaagaac atcgctgcaa gaccataaaa
      241 aacagccgtt gccgtcgcat gtccacttgg gaaactaaag cctgactcgc ttactaacca
      301 gttcacgcta gctggacgcg tacgaccaac caaacttttc aagacaagat ttaagactac
      361 tccacaaaca agcatcgttc caccaaacca aagtccgaca acaaattttc gtaaaaagaa
      421 taaaataaga acgactacga tagtcaaaat aattgtcgtt tctgcgcttc ctaaagtagt
      481 tagaaattta acaatggctg ttttatccgg ttgaatgccg ccgcggattt tttcaatcca
      541 gcttaagtca aaacgtgcta cccagttact ttctgttgcg atagcggaag cgatagtaat
      601 aaataaaata aggcaaaatc cgccaataac gaataacggt gttgcttttt tacgatttgt
      661 attcatggtt aactcctttt cattcggttg tttttagaaa ttcttttact tcttttacaa
      721 gcgcctgata ctgagcttgt tcagctgtcg cttcatttgt aagctctgta acgacatcat
      781 tttcataacg aacggaacct ttgctaacaa aagtggcatt gccaatcagt tgtagcgaaa
      841 tttcaccagc agcatctttt ttcgcagtta cttgcactct tccgccatca ttataaacat
      901 ttagcggcgt ttccaatata tcattatcta acattttttt aatcaaacta caagccgaca
      961 tcgctgttcc acatgcattc gtaaaaccga cgccgcgttc aaaagtacgc acataaatag
     1021 catcatcgct taaacgtttc acaaagctta cattcacgcc atctgggaaa tacggatttt
     1081 cgctatttaa ataacttgct aatttttctt gtttatcgga atctagcaca gcttggtcca
     1141 caaatgtaat caaatgcgga ttaggaacag aaacagcaga aaaagcgagt tctgcatcaa
     1201 gttctgggat aacttgatta aataattttt ccacgcctac atgcatcggt aatgtttctg
     1261 ctgcaaattt aacaggagaa atttccactt gataggttgg aatatcaaaa ccaagcgaag
     1321 ttgctttttt gacatcaagt atcgctttca tagtttctac ttttgcatct gtcaaagcat
     1381 gtttctcaag taaatagcga gctaccgttc ttaagccatt cccgcacatc gaagcaattg
     1441 agccatctga attaacgaca cgcatttggc caattggtcc aacttcactg ctttttgtga
     1501 catataaaat tccgtctgcc ccgccaagcg agtgctttct atcgcaaagc tttatcgcaa
     1561 aattagcacg tttttcatcc gaccattctg tgatgtgatt ttcctcttca tcaactaaga
     1621 aaaaatcgtt ttgcgaacca tgtacttttg taaagtgaat tgtttccatt acgtcaagca
     1681 acctcctcta tttggaatta cgtctataat accacatctt aaattaaaaa agcttgggga
     1741 acctcctttt gaaatgagta ggattttccc caagcgagca ttaagcttcg tagtgtttta
     1801 caacaatatc cgcacagcgg ccacacagtg ttggatgttt tggatttacg cctacatctt
     1861 ttttcactac acggcaacgt tcacaagttt cgccttctgc tacggtaatt tgaacagcta
     1921 cttgatttga tttgaatgca gattctggtg cattttctaa accttccaca agttcaaagt
     1981 cagaaacgat aaacagttgt gcaaaatcgc cttctaaaga atcaaatagt gttttcgctt
     2041 cgccgtctac atataaagtt actttagcaa gcattgattt accgattaat ttttcgttac
     2101 gagcgaattc taacgctttt tggacgttat cacggatttg catgaatgcg tcccatttcg
     2161 ctgtaatttc ttcgctatcc gctaatactt taacctctgg caagtcttgc aagtgaatac
     2221 tttccacgcc ttcaccaatc aagctattcc aaacttcttc tgttgtatgc ggtaaaattg
     2281 gagcaagtaa tttggttaac gtaacaaccg cttcataaaa gacagtttgc atagcacgac
     2341 gatcatgact atcagccgct tcgatgtaaa caacatcttt ggcaaagtcc atataaaatt
     2401 ggcttaattc tactgtacag aaattattga tttggtggta aatagtagag aattcgaaag
     2461 cttcatagtt atccttcaca tttttcacta aatcatttaa tttaattagc atatatttgt
     2521 caacttcacg taagttttca taagaaacgg cgttagtagt tggattaaag tcattaatat
     2581 ttcctagtaa gaaacgcatt gtgttacgga ttttacggta tacttcggat acttgtttta
     2641 agatttcatc actaacacga acatcagctt gataatctac agaagcaacc caaaggcgaa
     2701 caatatccgc accaagttgt ttaattactt tgcctggaag taaagtattt ccaagtgatt
     2761 tactcatttt gcgaccttcc ccatccagtg cgaaaccatg gcttagcacg ttacgataag
     2821 gcgcttcacc agtgattgct acagcagttg ttaaggatga gttgaaccag ccacgatatt
     2881 ggtcagagcc ttccatatat aaatcagccg gacgacttaa ttctgggcga gcattcagca
     2941 cagcttgatg actagaacct gaatcaaacc aaacgtccat aatatcggtt tcttttgtaa
     3001 attctccatt tggactacct ggatgcgtaa agccagcagg taataaatct ttcacatcgc
     3061 gttcaaacca aacattcgaa ccatgctcac ggaaaagttc agaaatgtga ttaattgttt
     3121 cgtctgtgat aatcgcttcc ccattttccg catagaaaat cggtagtgga acgccccatg
     3181 cacgttgacg agaaataacc cagtcgccgc ggtcgcgaac catattgaat aaacgtgttt
     3241 caccccatgc tggagtccaa ttaacacctt taacagcagc gagtaaatca tcacggaatg
     3301 cgtcaatcga agcaaaccac tgcgctgttg cacggaaaat aactggtttt ttcgtacgcc
     3361 aatcatgtgg ataagagtga gtgatgaatt ccatttttag taatgcgccc acttcttcta
     3421 gtttttctgt gaccattttg ttcgctgtat cgtaaaatac gccttcaaat cccggtgctt
     3481 cctctgtgaa tacaccatga tcatctagtg gagcaagtac ttctaaatcg tattttttcc
     3541 cgattaaaaa gtcatcttcc ccgtgtccag gagccgtatg aaccgcacca gtaccggctt
     3601 cagcagtagc atgttccccg ttcattacta aggaatcacg gtcatagaat gggtgtttag
     3661 ttacaacgcg gtcaagttca gaaccacgaa ctgttttcac tactgtcgca tcttcaaagc
     3721 ctagtttttc gcgtaagctt ggtaaaagtg cttctgctac aacatatttt tccccagcgg
     3781 attcaattac tacatagtcc aaatcagggt taacagtaat acccatgttt gcaggaattg
     3841 tccaaggagt tgttgtccag ataacgatat tcgttccttc atctagtaca ccttttccgt
     3901 cagtaacttt aaaggcaaca aaaatcgaag cagatttttt atcctgatat tcgatttctg
     3961 cttctgccag cgcagattca ctagaaggag accaataaac cggtttttta cctttgtaaa
     4021 tgtaaccttt tttcgccatt tcaccgaaga ctttgatttg ctctgcttcg tattctggta
     4081 aaagtgtaat gtaaggattt tcccagtcac cgttaattcc aagtcgtttg aatcctgtac
     4141 gttgaccgtc tacttgcgtc attgcatatt cggcacatag tttgcggaat tcagcaatag
     4201 acatttcttt ccgtttaacg ccttttttgg cgatagctgt ctcaattggt agtccgtgtg
     4261 tgtcccaacc aggaacatac ggggagctga agccagccat tgatttataa cggacgataa
     4321 tatctttgat tgttttgttt agagcgtgac ccatgtgaag ctcaccgtta gcataaggag
     4381 gcccatcatg caaaatgtac gccttgcgtc cagcattttt ttcttgaatc ttctcatata
     4441 gtttttcttc ttcccatttt gcttgccatt caggttcttt gtttggcagg tttccacgca
     4501 tcggaaaatc tgtttttggc attaataacg tatctttata ttccatactc tattctcctt
     4561 taaatcttta tttttaaaca caaaaaaatc tctcccaaaa aagggacgag attcgcggta
     4621 ccacccttgt tgacatgcaa ttttgttgct tgcccacttc attaatgcca taacgctggc
     4681 tcgcgctaac acttactcaa gcgattgctt tttcgggtta gaactaaaga gtgatttcta
     4741 ttttttagag gatagttggt ctcgcaccat ttaccaactc gcttcatatc ctttgtctaa
     4801 aaaatttact tgtctcttat aatcgttttt aacgttcttc tgattcagca gcttcgactt
     4861 ctttaataga cgctaattct gttgcatcta catcgtaagc catcatttgc tgccaatctt
     4921 cacttttaat taaatccatt tgcgcttcta ctaacatacg cagacgctcg cggaatactt
     4981 tagattgacg ttttaagtct tcaatttcaa tcgcgatttt acgagcttta gaaagtgagt
     5041 cgcttaaaat tcggtctgca tttttttcag cttcacggat aataagtttt gcttcttttt
     5101 cagcggaagc tttcacttct tcggcagctg tttgtgccac gattaatgat ttgtttaatg
     5161 tttcttcaat gtttgtaaaa tgacctaaac gttcttcact attatttaaa gtgtcctcaa
     5221 tacgcttttt ctctttaata acttgttcat aatctttaat gatttgatcg aggaagtcat
     5281 ttacttcgtc ttcgtcataa cctctaaaac cacgggtaaa ctctttgtta tgtatatcca
     5341 gcggcgataa tggcatatct agcacctcca tacgactatt tgtttataaa tacctaacat
     5401 acattctacc atagttacta gctttttcct agaatttata ttgaaaaatg gttagattaa
     5461 aaatccagct ttatctagcg ccttaatcgc ttgttctaat tgttctttcg tatctgcttc
     5521 aatcgtatgt aaatgtgttc catccgttaa accagacagc attgttgctc ctgttgtttg
     5581 caatttccgc acaaatttct ctacatcaaa acggcttttt aaatgtagtg aagcggtgat
     5641 ttcgccgtat attggatgat ccacaatcac atcaataatg gaaacaccgt gatctaccaa
     5701 aatatttagt tcctcggcag cttgttcttt cgtatgtttc acggcaataa cgcgcctttc
     5761 ccctgtataa cttgtttctt tcgcataaat atagccttgt ggggtagcca taattggttc
     5821 attgccagct tttaacaaag aaatatcttg aacaatcact tggcggctaa catttgtttt
     5881 ctgtgctaat tgatttccag aaattggcgc ctcggcttct tttagccatt ttaaaatcat
     5941 ttgcctacgc gtatctccta atattttttt catcttatca cctttttcgt aataatttat
     6001 cgatttcttc tttaaaaata atactatcgt ttaattcatt ttctcttcca aaagataagc
     6061 ggataaaacg gtttgcttct tctgttgttt ttccagtagc gattaatgtt ctggacggag
     6121 ctaaatcacg taaactacat gcacttgtcg tcgagatttg aatatctgct tcgtttaaag
     6181 caagtaacgc ttcctgacct tgcatatttg gcaaagtaag tcctaaaata tacggcgatg
     6241 tattgggtcc accttccact tctactcgcg cttctaatgt gtcgcaaatc gcagctttta
     6301 gtttcatagc tctaatcgct tcttgttctc tattttctat tatatcatag gcggcagttg
     6361 taaaggcagc aatagctgga acatttactg tccccggtct aaagccaaat tcatgatgta
     6421 catctggcaa aactgcctgc aaaggagaat ctggtttcat aaaaagtatt cccgcccctt
     6481 ttggtccata aattttatgc gatgaaatac taaaactagt ggcatcactt aaatctaaat
     6541 caatttttcc aaaggattga acgatatcgg tatgaaaaaa gacacctgct tttttagcaa
     6601 tatgagctag ttccgcaatt ggttggatgg ttccgatttc cgaattaaca tgttgaataa
     6661 taataagccc cgtctcagca gaaatcattt tttctaaagt agctggattt acttgcccaa
     6721 acgaatcaac tggtaatact ttaatccgac acttccccgc ttgttcgagt gccattagtt
     6781 gctgccaaac tgaagcgtgt tctagcggac ttacgagcac ttctttctta tcagttgtat
     6841 ggattagcgt ttggatggca atttgattac tctctgttcc accactcgta aataaaatcc
     6901 cgcggtttgg aacttgtaat aactcagaaa aactttcccg gcatttttct aaaagggccg
     6961 ctgatttcgt cccagcatca tgtaaactct ccgaattagc aaagaattct cgcgatgcat
     7021 ccataaaaac ttgtaaagaa gcttcactca ttttcgtagt agccgcatgg tcaaagtaaa
     7081 tcatctcttt atctctccct taaaatttta tacttgaatt tagtttgatt ttatgtgatt
     7141 atagatgaca agacatctgt atattcatta agaagtatac aattaatcga acctactatg
     7201 caagaggtgg aaacaatgac aaaagaacga gtgattatca ttgggagcgg tatcgcaggt
     7261 tgcactgctg ccttcagatt aatgcacgac tatgatgtga caataatcac aaaaggtctc
     7321 aaagaagaaa gtaattcgat gctcgctcaa ggcggtgtcg cagcagctgt gtccaaaaac
     7381 gataccccga aaaagcattt tagcgatacc ttccaagccg gttgttttca taataaagtt
     7441 ctcgcagtaa atcaactcgt taccaacggt ccaatcgtta tccaaaaatt aatcgcagaa
     7501 gggatgactt ttgacgaaca aaatggtgaa ctttcgcttg gtttagaagg cgcacaccaa
     7561 ttgccacgaa ttttacatac tggcggtgat caaaccggca aatttcttac tactttttta
     7621 caagaaaaat taacaaacat tcactggcaa gagcaaaaaa tggctatcga aattataaaa
     7681 cagaacgatt cggctatcgg cgtgcattgt ttagataaag aaaatcgact acatacttat
     7741 tacggagaac atattatttt agcaagcggc ggacttggac aactttttcc agttacgacg
     7801 aatgcggcga caatttccgg tgatggttta gcactggctt accgggctgg tgctaagcta
     7861 accgatatgg aatttatcca atttcatccc actcttctct ttctaaacgg acgttgtcat
     7921 gggcttattt cagaagcggt ccgcggtgaa ggagccaaac ttattcgcgc agatggttcg
     7981 gcggtaatga ctgatgttca cccgagagct gaccttgcgc cgcgcgatat tgttgctgcg
     8041 acgctatttg cagaaataca agatggcaat gaggttttcc ttgatatcac gccaattcct
     8101 aattttgaag aacgttttcc aggaattact gctaacttgg atgcatatca cgtcccgttt
     8161 cgtgaaacaa agcggattcc ggttcatcct ggcgcacatt ttttaatggg tggtattcgt
     8221 accgacctat caggtaaaac gaacattccc ggtttgtatg ccattggtga ggttgcaaat
     8281 gcaggtgtgc acggcgctaa ccgtctcgcc agtaactccc tccttgaaac gctcgtcttt
     8341 ggtgaaaaag tggctgaata cattctcacg caaaaaacaa acctaataga ccatccagaa
     8401 atccctcttt cgaaccaaac ccgaacaccc catttaccag ataaacaatt acttcaagag
     8461 aaaatctggg aaacgcttgg catcacaaga aaaccagaaa aaatcaccga atttcttcat
     8521 tggcttactg atttcgatta cgcaaatcac actcgagaaa cagcggaaat tagccacatg
     8581 cttatcaccg caaaaataat cgccgaaagc gcgctcaaac gaacagaaag tctcggcgca
     8641 catcgaatat taaaaggagt aataaaatga attccatact tatgaatcaa gcaattcaag
     8701 catttttact agaagatatc ggtcaacatg acttaagtgc agaaactgtt ttcccccgtg
     8761 acacaatggg ggaaggtgtt ttcctagcaa aagaaacagg tattctttgt ggcatttcca
     8821 tcccaccgaa agtttacgaa ctgctcggtg gaaatataca atttgaagct tataaaaaag
     8881 atggtgactg gattcaaaaa ggcgatatta tcgcggctgt tacggctcca gttcgcacgt
     8941 tactttccgg tgagcgggtc attttaaatt taatgcaacg gatgagtggt atcgctagcc
     9001 aaactaattt tgctgtcaaa caactggatg attccgctat tcgaatttgc gacacgagga
     9061 aaacagcgcc cggtctgcgt gccttcgata aatacgcggt acagactggt ggcggcttta
     9121 atcatcgcaa tggtctatac gatggtgtta tgctaaaaga caaccacatc gccttctctg
     9181 gaggtattac aagtgctgta tctactgtac gggaaaaact tggccatatg gtaaaaatcg
     9241 aagtggaaac ggaaactgct gaacaagtaa aagaagccgt tcaagccggc gcagatatca
     9301 taatgtttga taatcgcaca ccggaagaaa tcaagcaact ggttaagcta gttcccccgc
     9361 acattactac agaaatttcc ggtaatgtca ctttagaaaa tattcatcgt tataagggtt
     9421 ctggggcaaa ttacctttct ttaggctcct taacgcattc cgttcgtgca tttgacatca
     9481 gtttcaatag caaaggagga ataaaggcat gaatttacta gaaacggtcg aacaagatac
     9541 aatgccaact cattataagc aaatgacgca ggccgaaatg attgcccgcg tcacggaaat
     9601 taaagcccag cttggcgaga atctctttat cccctgccac cattatcaaa aagatgaggt
     9661 cgttccattt gccgatgcga ttggcgattc cttacaatta gcgcaaattg ctgcacaaaa
     9721 taaaaaagcc aaacatatcg ttttttgcgg tgttcatttt atggcagaaa cagcggatat
     9781 gcttacgaca agcgagcaga ttgttacttt gccggatatg cgcgctggtt gttcgatggc
     9841 agatatggcg gacattcatc agctaacaaa tgcttggcca aaactgcaaa cccttttcgg
     9901 cgatacgatt ttacctgtca cttacattaa ttccactgcc gcaattaaat ccttcgtcgg
     9961 tgaacatggt gggactacgg tgacatctag taacgcaaca aaaattgtct catgggcgct
    10021 cgaacaaaaa gagcggattt tctttcttcc ggatcaacat ctaggtcgga acactgcgtt
    10081 cgaactaggc attcccctcg aacatatggc aatttggaac ccgataaaaa atgaactgga
    10141 atatgagggc aatttggatg attgtaaagt cattctgtgg aaaggctact gctctgttca
    10201 ccaacatttc accgtcaaaa atatcgaaaa cattcgtaaa aacaatccta aaatgcggat
    10261 tattgttcat cccgaatgca cccatgaagt cgtttcttta gcagatgatt ccggttcaac
    10321 gaaaaaaatt gtaactgaaa taaacaatgc cgcacctggc acagaatggg cagtcggtac
    10381 cgaagccaat ttagttggtc gcattatcca agaaaaccca gataaaaaaa tcgtctcgct
    10441 aaatccgttt atgtgccctt gtatgaccat gaatcgaatt gatttaccac atttactctg
    10501 gacactagaa gctatccaaa acggcgaaca acgaaaccaa atcaaagtcg ataaacagac
    10561 aaccaaattt gccttaaaag ccttagaaag aatgcttcaa ttaagctaat aaaaaaacga
    10621 aagcagcaac tgctttcgtt tcagctcctt tataaaagct tctatttgtc aatctaaatt
    10681 ttaatctgta gaacttactc gagcatatgc tactatcatg actaaaaagc aactcttttc
    10741 acaaccattt aatatccacc ctaactatac attgaaaaaa atgcatttac actgatggtt
    10801 ttgtgtatat tttgggtata cccttttttt acatgaatca gctgta
//
LOCUS       DASDXX010000089        10627 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.089, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000089 DASDXX010000000
VERSION     DASDXX010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10627
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.089"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1135)
                     /locus_tag="U0280_001715"
     CDS             complement(<1..1135)
                     /locus_tag="U0280_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2271665.1"
                     /translation="MKGSFTKFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPL
                     MVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKRGWAIALLYLVIIGLLILLFSFVI
                     PAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTS
                     VINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQ
                     VLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPA
                     IAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILV
                     AGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRISGLYGEQPES"
     gene            complement(1251..3581)
                     /gene="secA2"
                     /locus_tag="U0280_001716"
     CDS             complement(1251..3581)
                     /gene="secA2"
                     /locus_tag="U0280_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HEM2271666.1"
                     /translation="MRQNYDDRKIVKQYREIARQIVKKEGLYKNMDQAELCEQTNFWR
                     EKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKT
                     LMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDIAQKK
                     AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLI
                     SDRKEEDLSLYHTANKLVKKMMKDDYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAE
                     AQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAK
                     EGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRV
                     NREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPH
                     QVLNAKNHAQEAEIIAKAGKRGMVTLATNMAGRGTDIKLDPDVHKLGGLAVIGTERHE
                     SRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSTKLKRKAPRDGKPV
                     NSRKIHAVVVDAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDLLLERNKLGVSS
                     EKILREVAEYSFIHPSDIPEEELEIYYSRQKELLGGTKFPISFDQVTLMDPREVVEEI
                     VSWHKKERNKFPAETIAAIEREVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLV
                     MYQKEGAQLFEKFQADYHFYFAHALLELDPDGLIQG"
     gene            4006..5415
                     /locus_tag="U0280_001717"
     CDS             4006..5415
                     /locus_tag="U0280_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion associated endopeptidase"
                     /protein_id="HEM2271667.1"
                     /translation="MKKATIAATAGIAVTAFAAPTIASASTVVVEAGDTLWGIAQSKG
                     TTVDAIKKANNLTTDKIVPGQKLQVNEVAAAEKTEKSVSATWLNVRSGAGVDNSIITS
                     IKGGTKVTVESTESNGWNKITYNDGETGFVNGKYLTDKVASTPVAPTQEVKKETTTQQ
                     AAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWALSVKYGVS
                     VQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKKEAPAAEKQAAPVVKENTNTN
                     TNTTTEKKETTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNNTNTSTPSKNTNTN
                     TNSNTNANQGSSNNNSNSSASAIIAEAQKHLGKAYSWGGNGPTTFDCSGYTKYVFAKA
                     GISLPRTSGAQYASTTRISESQAKPGDLVFFDYGSGISHVGIYVGNGQMINAQDNGVK
                     YDNIHGSGWGKYLVGFGRV"
     gene            5503..6687
                     /locus_tag="U0280_001718"
     CDS             5503..6687
                     /locus_tag="U0280_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEM2271668.1"
                     /translation="MKNLVKVKVFPKFTKGYKEGYPLILKERMEKWPKELQEGDVLEL
                     TDTNGQFIARGYHGEQNKGSGWLFTWDKKQQLDEDFLTNLITTAIEKRQFLFADDSTT
                     AFRIFNGEGDGLGGFTVDFYDGYLVIQWYSLGIYAFQKMIIDIFLSFPEIKGIYEKRR
                     FQEDTKDDFVAGQKATFPLIIKENGINYATYLDDGWMTGIFLDQRDVRRRISEDYSVS
                     KNVLNTFSYTGAFSVAALFGGASKTTSVDVAGRSLSKTKEQLEVNGLDPNEQAIIVED
                     VFHYFKYAARKQLTFDLVVVDPPSFARTKKVTFRAAKDYPAMLREIIDITAPNGTIIA
                     STNYAGFGMKAFKKLIAEAFQTSDRTYKIVETHSLPADFTVNKNFPEGNYLKVLFLTL
                     DI"
     gene            complement(6718..7374)
                     /locus_tag="U0280_001719"
     CDS             complement(6718..7374)
                     /locus_tag="U0280_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2271669.1"
                     /translation="MFAYDIYEPIGRKDEDTFPVIFALHGFGGDELEMAGRLELLMDR
                     FVVVSMRGDVEYGPAYGFYHMVTEGDPNPQEVDYISLRVAQFIDKICTDYISIDKEQV
                     FLAGFDQGAVLTISIMQSYGGQYKAAALLSGRLPYYMEERPANLMLKDKRIFIGHGIE
                     DAVIQISEADDIARLFEKMGCHVEKHRYFIGHNVNEAEEDDLYRWFESFLPNQPVKNK
                     "
     gene            complement(7396..7605)
                     /locus_tag="U0280_001720"
     CDS             complement(7396..7605)
                     /locus_tag="U0280_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271670.1"
                     /translation="MANIEYEIIEEIGVLSENARGWRKELNKISWNGRPPKYDIRDWS
                     ENHEKMGKGITLTDEEAEVLKKLLD"
     gene            7770..8522
                     /locus_tag="U0280_001721"
     CDS             7770..8522
                     /locus_tag="U0280_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEM2271671.1"
                     /translation="MSTETTDYLLETCLMAGKIMMESGAEMYRVEDTMNRIATIASNK
                     KGISFVTPTGLFMSLEGERNVQLQQIPTRTINLEKVSMVNEFSRDFAEKRISLKELHT
                     KLVNLDKDVRYFPIWLQIIAASLVSGSLMVIFGGGWFDFIPTCIIGAIGFIIFYYTQI
                     FMKVKFLAEFLASLSVGLLAVLTISIGWGINLDTMIIGGVMPLVPGVPITNAVRDLIA
                     GHLLSGMARGTEALLTSCAIGIGIAVVFRFFL"
     gene            8536..8994
                     /locus_tag="U0280_001722"
     CDS             8536..8994
                     /locus_tag="U0280_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM2271672.1"
                     /translation="MDLVWTIIIQLVLSYVATVTFAIITNVPKRALNACGITGTFGWM
                     AYWTLMQMDSGTGASSLAGAFVVAVLSHFFAKYKKLPITIFNVPGIVPLVPGGLAYQA
                     VRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRTFRERKERI"
     gene            complement(9049..10512)
                     /locus_tag="U0280_001723"
     CDS             complement(9049..10512)
                     /locus_tag="U0280_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271673.1"
                     /translation="MKKKYILCLFAVMLFCTGFLFGNSQVDAAETDTSNVTYKYIDIS
                     TLTETQKNSIIKGKPNETLTNDYENYSFVYQKNTSGPTTNTDNTSDNNKDQNGTLLKA
                     GDVGPNIYLVILGFILLGSGIGLLTLKKRHAKQLLVFLLVLGGSSLLVGSIVQATENS
                     NLKTQESQTVVKGTKETKQPESIAGYTYVGYIHTSKNNTAPPVEKGIVTVNYQDEQGN
                     SVAATETLEGDIGKPYQTSMKNIEGYTWKEVKGEATGTFTEKAQVVTYVYQKVSVATV
                     TVRYLDQDGKPIHEPQTISGNVGEPYDASTDKYKLQIDGYVLDTTKLPNNANGTFTNQ
                     ATQVTYIYTKEAQDVTITIKFVDNNGNPFVLTDLTTYKNGDLVPVYPNLDQYHMRLNY
                     NQQIYSQGEAVSDIVLSAKEGETYSLPERMTFNIIDDKGNEIPYVISQNPDFSSSGIE
                     KWENYRSIPANHEGTLTGENVVVTYQIFVYGVMIPAP"
BASE COUNT         3247 a         2125 c         1869 g         3386 t
ORIGIN      
        1 cactttcagg ttgttccccg taaagcccag agattcgttt gaaccaaata aatacatgcg
       61 ttacgatgac tttaagtacc gcataacctg gtactgcgaa gataacaccc agtacaccga
      121 atagatttcc agctactaaa ataacgaata aaatcgtgat tggatgtact tttagtgttt
      181 tacccatgac ttgaggagaa atgaatttac cttcaagtaa ttgaacgaca caccagacta
      241 tgattaattt aattagtaac caaggtgaag taacaatcgc gataataatc gctggtgtaa
      301 tcgcaattgc tggtcctaaa taaggaacaa tactagtaca agctgcaata atagcaagtg
      361 ttaatgcata tggtagaccg ataattaaat aaccgataaa tagcaaaata ccaatacaca
      421 aacttacaat aatttgtcca cgaatatatg aactaatttg gtggtttgct tcaccaagta
      481 cttggcgagt atgcgcacga ccatttactg gtaacatttt tagtaggaag tctggtaatt
      541 tttttccatc ttttaacaag tagaataaaa caagcggcgt agttacaatc gctaaaacaa
      601 cctctgttac cgttccaaca atactaccaa tacttgaaat agcactatta attacagatg
      661 ttccttttgt ggaaagagtc ttcatgatat cgctcatgtt cgtatttaat ttatctttta
      721 tttgatcaaa taagctcgag cgactgaact catcaaattt ctgtgtgatt tggtcccaat
      781 accccgggaa tgatttgaac aagctaacaa tctgatcttt cacagctgga atgacaaaac
      841 taaatagtag aatgagtaaa ccgataatca ctaaatatag taatgcaatt gcccaacctc
      901 gcttccactt atgtttctct aaccaatcaa tgataggatt aaataaatag taagatatcc
      961 cagctaaaat gattggtgca gcaacggttt taagaattac cattaacgga tcaaaaataa
     1021 aggcaatctt agttaataca taaatatcaa gtgctactaa aagaaaaatt agtaacccta
     1081 acacaaattt gttttctata aaaaattgtt taaactttgt gaatgacccc ttcactttac
     1141 caccctcttt tgtctaaatt tattttcgtt tggtactatt atatagatta ataccctcgt
     1201 tctcattaaa ttacccataa atttggaaaa aatcagacgc aagttgtatt ttagccttgg
     1261 attaagccgt ctggatcaag ttcaagtaag gcgtgagcaa agtagaaatg atagtctgct
     1321 tggaatttct caaataattg agccccttct ttttggtaca taactaatgg atcttgttgt
     1381 ccatatgctc gcaagtggat accttcgcgt aattgtacca ttgcgtccag atgcataacc
     1441 cacatttggt ccattaaatt caaatagact tctcgttcta ttgcagcaat cgtctcagct
     1501 gggaatttat tgcgttcttt tttatgccaa gatacgattt cttctaccac ttctctcgga
     1561 tccatcagcg ttacttgatc aaaagaaata gggaatttcg tgccgccgag caattctttt
     1621 tgacgtgaat aataaatttc taactcttct tccggaatat cacttggatg gataaatgaa
     1681 tattcggcaa cttcacgtag aattttttcg gaagagactc caagtttatt tctttctaat
     1741 aataaatcgc gttctttata taccattttg cgttgtaaat cgattacttc atcgtaggaa
     1801 agcaaatctt tacgaatatc gtagtttgct ccttctaggc gtttttgtgc atccacaacg
     1861 acagcatgaa ttttccttga attaactggt ttcccatcac gtggtgcttt gcgtttaagt
     1921 ttcgtggaaa gtttctccca gctcttactt tcaaattgtt ctaataaatc atcttctaaa
     1981 gaaatcataa acttactgaa accagggtca ccccgtcgtc cagaacgtcc cattagctgt
     2041 agatctatcc gacggctctc atggcgctcc gttccaatta cagctagtcc gccaagctta
     2101 tgtacatctg gatccagctt gatatctgtc ccccgaccag ccatgttcgt tgctaaagtt
     2161 accattccgc gtttcccagc tttggcaatt atttccgctt cttgggcatg gtttttcgca
     2221 tttaatactt ggtggggaat tccagcagcg tctaataagc cactgatcca ttcattactt
     2281 ttaatagaag aagttcctat taaagttggc tgtccttttt catagcgcca tgatacttca
     2341 tacacaatcg cacgaccttt ttcctttttc gtatagaaaa tatcatcttg catatcttcc
     2401 cgatttacac gtaaattggt ggggattact acgacatcca tgttataaat ttgacggaat
     2461 tcttcttctt cggttttagc cgttcctgtc attccagaaa ttttcttata catccggaag
     2521 tagttttgaa ttgtaattgt tgctagcgta cgtgattctt ctttaacttc cacgccctct
     2581 tttgcttcga ttgcctgatg gagtccgtca ttaaagcgcc ggcctggaag cgcacgacca
     2641 gtatgtggat cgataattaa tacttcatca tcaagcacca cataatcttt atctttatgc
     2701 atcaagaaat gagctcgcat taaaagcatc gtaattctaa gttctgactg cgcctctgcg
     2761 gaataaagtg attcgacacc ccaaaacttc tgggctttct caattccagc atcattcaac
     2821 caaacaaagc gtttatgttc ttccatctca taatcatctt tcatcatctt cttcacaagc
     2881 ttattcgctg tatgataaag ggacaaatct tcttctttac ggtcagaaat cagtaggggc
     2941 gttctcgctt catctattaa aattgaatct gcttcatcta ttaaaacaaa atcaagtcca
     3001 ctttgtactt tatcttcttt ttggcgtacc atattgtcgc gtaagtaatc aaaaccaaat
     3061 tcagaagccg ttccataaat aacatctgct gtataaatgg cctttttttg ggctatgtct
     3121 aaaccagatt catttaaagc aacggaaaca ccaagatatt ccagcacttg tccaatttct
     3181 tcccggtcac gtctagctaa atactcattg gcagtcacaa ggtgtacacg attaccacgc
     3241 attacttcta taaacataac aaataacgac atcaatgttt taccttcgcc ggttttcatt
     3301 tctgccactt tgccatcgcc gagaacgagc gctcctatta attgcactac aaccgcatcc
     3361 aaaccaataa ttcggctagc tgcttctctc gccaaagcaa aaatattaat tttatctcga
     3421 tcagtcatcg gttttgtctt aaacttctcg cgccaaaaat tagtttgttc acaaagttca
     3481 gcctgatcca tatttttata taagccctct ttttttacaa tttgacgggc tatttctcga
     3541 tactgtttca ctatttttcg atcatcataa ttttgtctca ttatataaca tcctccatac
     3601 cttctattat agaataccat aaactcatct ggcaattcat ttcgagtcac gaagaacgga
     3661 aaaactgccg atttttatat tacaaatgta ttaagttttt ctattaacaa aaaacaatag
     3721 gtttcccata gcgaaagttg ttgattaacg ttcacatccc acttacacta taaaggttta
     3781 cccagcagta catctcaagc cctaagaata cacgttcgct tttcaactgt tacaaaatta
     3841 ttacaaatag ttggtatagt cctctatagc ctttggagct attatctcat catttgtttt
     3901 ttaggtgaaa actgggtaaa cttagtatta atcaatataa aattaattct caaatactta
     3961 attacgtact gggattttct gaaaaaagag aggagtttta tgaatatgaa aaaagcaact
     4021 atcgcggcta cagctgggat tgcggtaaca gcatttgctg ctccaacaat cgcatccgca
     4081 agcactgtag tagtcgaagc tggtgatact ctttggggta tcgcacaaag taaagggact
     4141 actgttgacg caattaaaaa agcaaacaat ttaacaacag ataaaatcgt accaggtcaa
     4201 aaattacaag taaatgaggt tgctgctgct gaaaaaacag agaaatctgt tagcgcaact
     4261 tggttaaacg ttcgtagtgg cgctggtgtt gataacagta ttattacgtc aatcaaaggc
     4321 ggaacaaaag taactgttga atcaaccgaa tctaatggct ggaacaaaat tacttacaac
     4381 gacggggaaa ctggtttcgt taacggtaaa tacttaactg acaaagtagc aagcactcct
     4441 gttgcaccaa cacaagaagt gaaaaaagaa actactactc aacaagctgc acctgctgca
     4501 gaaacaaaaa ctgaagtaaa acaaactaca caagcaacta cacctgcacc taaagtagca
     4561 gaaacgaaag aaactccagt ggtagatcaa aatgctacta cacacgctgt taaaagcggt
     4621 gacactattt gggctttatc cgtaaaatac ggtgtttccg ttcaagacat tatgtcatgg
     4681 aataatttat cttcttcttc tatttatgta ggtcaaaaac ttgctattaa acaaacagcc
     4741 aacacagcta ctccaaaagc agaagtgaaa aaagaagctc cagcagctga aaaacaagct
     4801 gcaccagtag ttaaagaaaa tactaacact aacacaaata ctactacaga gaaaaaagaa
     4861 acaacacaac aacaaacagc acctaaagca ccaacagaag ctgcaaaacc agctcccgca
     4921 ccatctacaa acacaaatgc taataaaacg aatacgaata caaacaatac taatacaagt
     4981 acaccatcta aaaataccaa tactaataca aactccaata cgaatgctaa tcaaggttct
     5041 tctaacaata acagcaattc aagtgcaagt gccattattg ctgaagctca aaaacacctt
     5101 ggaaaagctt attcatgggg tggtaacgga ccaactacat ttgattgctc tggttacact
     5161 aaatatgtat ttgctaaagc gggaatctcc cttccacgta cttctggcgc acaatacgct
     5221 agcactacaa gaatctctga atctcaagca aaacctggtg atttagtatt ctttgactat
     5281 ggtagcggaa tttctcacgt tggtatctac gttggtaatg gtcaaatgat taacgcgcaa
     5341 gacaatggcg ttaaatacga taacatccac ggctctggct ggggtaaata tctagttggc
     5401 ttcggtcgcg tataattaat aacttaaagt aacctgtgga gcaagcagtt cgcttcacag
     5461 gttttttgtt ggaaatttta tcttaatgaa agacggtgca tgatgaagaa tctagtaaaa
     5521 gtaaaagttt ttcctaagtt cacaaaaggc tataaggaag gttatcccct tattcttaaa
     5581 gagcgtatgg aaaaatggcc aaaagaatta caagaaggcg acgtattaga attaacagat
     5641 acgaatggtc aatttattgc aagaggctac cacggagaac aaaacaaagg cagcggctgg
     5701 cttttcactt gggacaagaa acagcaactc gatgaagact ttttaacgaa cctaattacg
     5761 acagcaatcg aaaaacgtca atttctattt gcagatgact ctactactgc ttttcggatt
     5821 tttaatggcg aaggagatgg acttggtggt ttcactgttg atttttatga tggttatctc
     5881 gtaattcaat ggtacagtct aggcatctac gctttccaaa aaatgattat tgatattttc
     5941 ttatcttttc cagaaataaa aggtatttat gaaaaaagac gttttcaaga agatacaaaa
     6001 gacgatttcg tcgccggtca aaaagcaact ttcccactta ttattaaaga aaatggcatt
     6061 aattatgcaa cttatttaga tgatggttgg atgacaggta tctttctaga tcaacgggat
     6121 gtgcggagaa gaattagtga ggattattct gtttcaaaaa atgtcttaaa tacattttcg
     6181 tatacagggg cattctcggt agcagcttta tttggtggcg cgagtaaaac gacaagcgta
     6241 gatgtggctg gtcgttcgct cagcaagaca aaagaacaat tagaagtaaa tggtcttgat
     6301 ccaaacgagc aagcgattat cgtagaagat gttttccatt attttaaata tgcagcgcgc
     6361 aaacaattaa cttttgattt agttgttgtt gatcccccaa gctttgcacg cacaaaaaaa
     6421 gtaactttcc gagcggcgaa agattaccct gctatgcttc gtgaaatcat tgacatcact
     6481 gctccaaacg gcaccatcat tgcttcaaca aattatgcag gattcggtat gaaagcattt
     6541 aaaaaattaa ttgcggaggc cttccaaaca agcgaccgta cttataaaat tgttgaaact
     6601 cattccttac ccgcagattt cacggtaaat aaaaactttc ctgaggggaa ttatttaaaa
     6661 gtgctctttc ttactttaga tatctaaaaa acagcgaccg agtgcggtcg ctgtttttta
     6721 tttatttttc actggttggt ttggcaaaaa gctttcaaac catctatata agtcatcttc
     6781 ttccgcttcg tttacattgt gaccgataaa ataacgatgc ttctccacgt gacaacccat
     6841 tttctcgaaa agtcgggcga tgtcatctgc ttcagaaatt tggataacag catcttctat
     6901 accgtgaccg ataaaaattc gcttgtcttt caacattaag ttagcgggtc tttcttccat
     6961 ataatacggc aaacgcccgc ttaacaaggc tgctgcttta tattgaccac catagctttg
     7021 cataatggat attgttagaa ctgcgccttg atcaaatcct gcaagaaaaa cttgttcttt
     7081 atcaattgaa atgtaatccg tacaaatttt atcaataaat tgtgcgacac gcaggcttat
     7141 ataatctacc tcttgcgggt tgggatcacc ttctgtcacc atatgataaa aaccgtaagc
     7201 cggaccatat tctacgtctc cacgcatgga aacaacaacg aaacgatcca ttaataattc
     7261 tagtcgtccc gccatttcta gctcgtcccc accaaaacca tgaagagcaa aaatcactgg
     7321 aaaagtatct tcatcttttc taccaattgg ttcgtaaata tcataagcaa acattctcat
     7381 tctttacacc agccctcaat ctaacagttt ttttagtact tctgcttctt catcagttag
     7441 tgtaatccct tttcccattt tctcatgatt ttctgaccag tcgcggatat cgtatttagg
     7501 tgggcggccg ttccagctga ttttgtttaa ttccttccgc caaccacgcg cattttcaga
     7561 taatacgcca atttcttcga tgatttcata ttcaatattc gccaaaataa tccttatcct
     7621 ttctgattct atatctacca tactatcaaa tatttacccc aaatcacatc gaaacaatca
     7681 caaattcaaa aaatgcaccc ttcccactag aatttttgat ttgattgcgt tacgattgag
     7741 aaggaataaa gggttggagg tgcttagtta tgtcgactga aacaacagat tatttgctag
     7801 aaacatgctt aatggcaggc aaaataatga tggaaagtgg cgctgaaatg tatcgcgtgg
     7861 aagatacaat gaaccgcatt gcaaccatcg ctagtaataa aaaagggatt agtttcgtga
     7921 cgccaactgg gctttttatg tcacttgaag gtgagcgtaa tgtacaatta cagcaaattc
     7981 ccacaagaac cattaattta gaaaaagtat ctatggtcaa tgaattttcc agggatttcg
     8041 cggaaaagag aatttcctta aaagaattac atacaaagct cgttaattta gataaagatg
     8101 ttcgctactt tcctatttgg ttgcagatta ttgcggcatc actcgttagt ggatcgttga
     8161 tggttatttt tggcgggggt tggtttgatt ttattccgac ttgtatcatt ggcgctattg
     8221 gttttattat tttttactac acgcagattt ttatgaaggt gaagtttcta gcagaatttt
     8281 tagcttcatt aagtgtcggg ctcttagctg ttttgacgat ttcgattggt tggggtatta
     8341 atctggacac gatgattatc ggtggcgtga tgccgcttgt tcccggggtg ccgattacga
     8401 atgcggttcg ggatttgatt gctgggcatt tgcttagtgg aatggcacgt ggaacagaag
     8461 cgctacttac ttcttgtgca ataggaattg gaatcgcggt tgttttccgc tttttcttat
     8521 aaaggaggcg ctataatgga tttagtttgg actattatta ttcaattagt gctaagttac
     8581 gttgcgacgg tgacgtttgc gattattaca aacgttccga aaagagcgtt gaatgcttgt
     8641 ggtattaccg gaacatttgg ctggatggct tattggactt taatgcaaat ggactctgga
     8701 acaggcgcat cctctctagc aggggctttc gtcgtcgctg tactcagtca cttttttgcg
     8761 aaatataaga aattgccaat tacgattttt aatgttccgg gaattgtccc gctcgttcct
     8821 gggggacttg cttaccaagc tgtgcgtaat tttgtattag gtgattatac ggaagcaatt
     8881 ggcttttctg tgcaagtaac agtcgttgct ggcgcgattg ccgctggatt aatgttatca
     8941 gaggttttca atcatagtat tagaacattc cgtgagcgta aagaacgtat ttgaaaaaaa
     9001 ccaatctcta atagagattg gtttttttca aatacacggc ttctcacttt atggcgcagg
     9061 aatcattact ccataaacaa atatctgata cgtaaccact acattttctc cagtaagtgt
     9121 cccttcatgg ttggctggta tacttcggta gttttcccac ttctcaatcc cgctactact
     9181 aaagtcagga ttttgcgaaa tcacataggg gatttcattg cctttgtcat ctattatatt
     9241 gaaggtcatt ctttctggta aggaatacgt ttctccttct ttagcagaaa gaacaatatc
     9301 agatactgct tctccttggc tatagatttg ttgattataa tttaatctca tatggtattg
     9361 gtctaaatta ggataaacag gtactaaatc accattttta taggttgtta aatccgttaa
     9421 aacaaatgga tttccattgt tatcaacaaa cttaattgtt atggtaacat cttgtgcttc
     9481 tttcgtataa atataagtta cttgcgtggc ttgatttgtg aacgttccat tcgcattgtt
     9541 cggtagtttt gttgtatcta aaacataacc atcaatttgt aatttgtatt tatctgttga
     9601 agcatcgtaa ggttcgccaa catttccgct aattgtttgt ggctcgtgga ttggttttcc
     9661 atcttgatcg aggtatctaa cagttacagt agctacggac actttttgat aaacataagt
     9721 aacgacttgt gctttttctg taaaagtccc ggttgcttct cctttgactt ctttccacgt
     9781 atagccctcg atatttttca tagaagtctg atatggtttg ccgatgtcgc cttctaatgt
     9841 ttcagtggcc gcaactgaat ttccttgttc gtcttgatag tttaccgtta caatcccttt
     9901 ttcaaccggg ggcgctgtat tatttttact tgtatgtata tatcctacgt atgtataccc
     9961 tgcaattgat tcgggttgtt tcgtttcttt tgttcctttt acgacggttt gagattcttg
    10021 ggtttttaag ttactattct ctgttgcttg aacaatcgac ccaactaaca aactactacc
    10081 gccaaggaca agaagaaata ctaacagctg cttagcgtgt ctttttttca atgtaagaag
    10141 cccaatgcca cttcctaata aaataaaccc tagaatgact aaataaatat ttgggccaac
    10201 atctccagct tttaatagtg ttccattttg atctttatta ttgtcagaag tattatctgt
    10261 atttgtagtt ggtcctgaag tatttttttg atacacaaag gaatagtttt cataatcatt
    10321 tgtaagtgtc tcgtttggct tccctttgat aatactattt ttttgtgttt ccgttaatgt
    10381 gctgatatca atgtatttat acgtgacatt gcttgtatcc gtttcagcag catcaacttg
    10441 cgaatttcca aaaaggaaac ccgtacaaaa taacatcact gcgaataagc aaagaatgta
    10501 ttttttcttc atagtgcaat ccctccccca tataattaaa ttctcatttt aactgctcac
    10561 tcttcctatc aaaaagagag caaaactagc gcttaattaa gctaaacaat tatatattag
    10621 gcaaaaa
//
LOCUS       DASDXX010000090        10614 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.090, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000090 DASDXX010000000
VERSION     DASDXX010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10614
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.090"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            8..80
                     /locus_tag="U0280_001724"
     tRNA            8..80
                     /locus_tag="U0280_001724"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:41..43,aa:Val,seq:tac)
     gene            89..164
                     /locus_tag="U0280_001725"
     tRNA            89..164
                     /locus_tag="U0280_001725"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:122..124,aa:Thr,seq:tgt)
     gene            205..277
                     /locus_tag="U0280_001726"
     tRNA            205..277
                     /locus_tag="U0280_001726"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:238..240,aa:Lys,seq:ttt)
     gene            283..364
                     /locus_tag="U0280_001727"
     tRNA            283..364
                     /locus_tag="U0280_001727"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:317..319,aa:Leu,seq:tag)
     gene            380..454
                     /locus_tag="U0280_001728"
     tRNA            380..454
                     /locus_tag="U0280_001728"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:412..414,aa:Gly,seq:gcc)
     gene            469..554
                     /locus_tag="U0280_001729"
     tRNA            469..554
                     /locus_tag="U0280_001729"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:503..505,aa:Leu,seq:taa)
     gene            564..637
                     /locus_tag="U0280_001730"
     tRNA            564..637
                     /locus_tag="U0280_001730"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:598..600,aa:Arg,seq:acg)
     gene            648..721
                     /locus_tag="U0280_001731"
     tRNA            648..721
                     /locus_tag="U0280_001731"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:682..684,aa:Pro,seq:tgg)
     gene            744..816
                     /locus_tag="U0280_001732"
     tRNA            744..816
                     /locus_tag="U0280_001732"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:777..779,aa:Ala,seq:tgc)
     gene            859..932
                     /locus_tag="U0280_001733"
     tRNA            859..932
                     /locus_tag="U0280_001733"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:893..895,aa:Met,seq:cat)
     gene            944..1017
                     /locus_tag="U0280_001734"
     tRNA            944..1017
                     /locus_tag="U0280_001734"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:978..980,aa:Ile,seq:cat)
     gene            1040..1129
                     /locus_tag="U0280_001735"
     tRNA            1040..1129
                     /locus_tag="U0280_001735"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1076..1078,aa:Ser,seq:tga)
     gene            1172..1245
                     /locus_tag="U0280_001736"
     tRNA            1172..1245
                     /locus_tag="U0280_001736"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1206..1208,aa:Met,seq:cat)
     gene            1250..1325
                     /locus_tag="U0280_001737"
     tRNA            1250..1325
                     /locus_tag="U0280_001737"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1283..1285,aa:Asp,seq:gtc)
     gene            1330..1402
                     /locus_tag="U0280_001738"
     tRNA            1330..1402
                     /locus_tag="U0280_001738"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1363..1365,aa:Phe,seq:gaa)
     gene            1431..1503
                     /locus_tag="U0280_001739"
     tRNA            1431..1503
                     /locus_tag="U0280_001739"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1464..1466,aa:His,seq:gtg)
     gene            1528..1598
                     /locus_tag="U0280_001740"
     tRNA            1528..1598
                     /locus_tag="U0280_001740"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1560..1562,aa:Gly,seq:tcc)
     gene            1624..1697
                     /locus_tag="U0280_001741"
     tRNA            1624..1697
                     /locus_tag="U0280_001741"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1658..1660,aa:Ile,seq:gat)
     gene            1704..1776
                     /locus_tag="U0280_001742"
     tRNA            1704..1776
                     /locus_tag="U0280_001742"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1737..1739,aa:Asn,seq:gtt)
     gene            1811..1901
                     /locus_tag="U0280_001743"
     tRNA            1811..1901
                     /locus_tag="U0280_001743"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1845..1847,aa:Ser,seq:gct)
     gene            1907..1978
                     /locus_tag="U0280_001744"
     tRNA            1907..1978
                     /locus_tag="U0280_001744"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1940..1942,aa:Glu,seq:ttc)
     gene            2043..3218
                     /locus_tag="U0280_001745"
     CDS             2043..3218
                     /locus_tag="U0280_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2271674.1"
                     /translation="MGAKGKFWILTMVVAISGLSQGVLLPLIAIILEEKGISAGINGF
                     HATGIYLGVLLISPFIEAPLHKYGYKPIILVGGGLVAVSILAFPIWFNLYFWFILRLL
                     IGVGDHMLHFSSQTWIGAMSDPSKRGRNMAIYGLFFSLGFAIGPQLVNLAKINANLPF
                     FLSGILVLIAWGLVWFVRNDFVAEKAVIRKISFWGSLKRFSDVFKLAWVAMIPPFLYG
                     ILETGLNATFPVVGLRDGLDTMMIAMVISSFSVGTIIFQVPIGIVSDKFGRGKVLPLL
                     TGAGAVVFMLTAFVKIPVLYVVFFFVLGILLGSLYSLGLSYMTDLTPLELLPAGNILV
                     GMCFSLGSIIGPSATGMMIGIFGNQIFYFVVAGILVLGCLLLVFGARKDALEKKMGN"
     regulatory      3295..3401
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            3508..5805
                     /gene="metE"
                     /locus_tag="U0280_001746"
     CDS             3508..5805
                     /gene="metE"
                     /locus_tag="U0280_001746"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM2271675.1"
                     /translation="MVKAISSNLGYPRLGEKREWKRALEKFWNGTISEKELLAETKIL
                     RLHALKKQQDKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIAR
                     GKNDAVASEMTKWFNTNYHYIVPELADAEPKVLDNRALYYYEEAKKELGIEGKPVLVG
                     PITYLKLGKGSDAKSFEVLLDKFIPAYVEILKELEAAGAKWVQIDEPYLATSFDKKEI
                     ALFEKVYQAFQTAVPNLKIELQTYFESLDYYEEVVNLPVAAIGIDFVHDHGDSIKALK
                     AHGFPEDKYLAAGVVDGRNVWRSDLDAKLELLTEIANYVADGKLIVQPSNSLLHVPVT
                     KLSEPDLDEVILGGLSFADQKLEEITILTKALTNGAESVAAELEESRAAVTALNESSH
                     RNNLEVQEAIANLKNVRVDRELPFAERIKLQHAWLKLPLFPTTTIGSFPQSPEVRKTR
                     ADWLKGNITDAEYNAFIEKETARWIKIQEDLDIDVLVHGEFERTDMVEYFGQKLAGFQ
                     ATKFGWVQSYGSRAVRPPLIYGDVAFTEEITVKESVYAQSLTKRPVKGMLTAPVTIIN
                     WSFVRDDVPESVVANQVGLALRKEVEALERNGIKVIQVDEPALREGLPLKQARWQKYL
                     DDAVYSFKLTTASVQNDTQIHTHMCYSDFDDIIDTISALDADVISIETSRSHGEIIST
                     FEEVTYDKEIGLGVYDIHSPRVPTVTEIQDNIRRALRAIDAKQFWINPDCGLKTRKEP
                     ETIAALQDMIKATKEVRAEYQVLEK"
     gene            5827..6951
                     /locus_tag="U0280_001747"
     CDS             5827..6951
                     /locus_tag="U0280_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2271676.1"
                     /translation="MAKLKQETIAAQIGNRKCERTGAVNMPVYFSTAYQHADLGVSTG
                     YDYTRTGNPTRDALQEALAELENGTHAFATSSGMSAIQLVFQLFKTGEHIISSQDLYG
                     GTFRYFEQFGAQYNIGFSYWDGAEIADLEKLVRPETKAIFIETPTNPLMQETDIAAVS
                     EWAGAHDLLVIVDNTFYTPILQQPLTLGADIVIHSATKYLGGHNDVLAGAVIVKEERL
                     GNFFFNQLNATGAVLSPFDSWLLIRGLKTLVLRVRQHQANAEKIAAFLESHELVEEVR
                     YPGRGGMISFFIQDAALVSPLLKELELFTFAESLGGVESLITYPTTQTHADIPEELRN
                     SYGLTDKLLRISVGIEASEDLIADLSKALDAVLEGVSARG"
     gene            6944..8116
                     /gene="metC"
                     /locus_tag="U0280_001748"
     CDS             6944..8116
                     /gene="metC"
                     /locus_tag="U0280_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEM2271677.1"
                     /translation="MANEYAQDTAVIKASLGIDKETGALNTPIHLSSTFHQHDFDNYH
                     AYDYARSGNPTREKVEQAIAELEGGTNGFAFASGMAAVSAALFTLSKGDHFIIAKDVY
                     GGTFRFVEQVLPRFGITHTFVDTTNIDEVAKAFQANTKLVYLETPSNPLLHVTDIRTV
                     AKLAKANGCYTFVDNTFLTPLIQKPLELGADLVIHSATKFLGGHSDILAGLIVTNNPN
                     LAEAVYFLQNSTGGVLGVQDSWLLLRGLKTLSVRMKAGTETAEKIALFLNAEPDVVAV
                     HYPGLPSHAGYDIQVEQATSGGAVLSFDLGSEEAVRELVTHLELPVFSVSLGAVESIL
                     SYPAKMSHAAVPEEERLAQGITPGLLRFSAGLEDADDLIADLKQALSFIKKGSVAK"
     gene            8113..9966
                     /locus_tag="U0280_001749"
     CDS             8113..9966
                     /locus_tag="U0280_001749"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HEM2271678.1"
                     /translation="MNLRKDLSEKVLIADGAMGTLLYSYGVDRSFEELNLSHPEDIVA
                     IHKAYIGAGADIIQTNTYGANYIKLARYGLEDEVKRINQAAIRLAKEAARGTGTYIFG
                     TIGGINGAVDARLPAAPLEEIKRSFREQLYCFLLDGVDAILLETYYDLDELKTVLKIL
                     RETTDLPVVANVSMHEPGILQNGKKLPDALEELIALGADVVGINCRLGPYHMARALET
                     VPLYDNAYLAVYPNASLPEMQEGKVIYQSDTDYFEHYGEVFRQEGARIIGGCCGTTPD
                     HIRALRKGLETTKPILEKEVRPILELVPEEVEDVDSGERLLDKVKERLTILVELDPPR
                     TFDTTKFFEGAQALDEAGVDAITISDNSLATPRISNMALASILKHEYGIKPLIHLTTR
                     DHNLVGMHSHVMGFHKLGLHDVLAITGDPTKVGDFPGASSVFDLRSVELVQLIKKFND
                     GISYTGKSLKEKARFHVGAAFNPNVLNLEKAVRLIERKVEYGADYIITQPIYDVNKAI
                     LLKEALQKANIDVPLFIGVMPLLSSRNAEFLHNEVPGIRLTDDVRERMREAEEHGHAN
                     EEGMAIARELVDAICEHFQGIYIITPFLRYDLSIELAKYAQNKQQVQIGSK"
     gene            complement(10000..>10614)
                     /locus_tag="U0280_001750"
     CDS             complement(10000..>10614)
                     /locus_tag="U0280_001750"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM2271679.1"
                     /translation="YILSILGGVYLSIELNWYVGLLGAICMLVGFLYTGGPYPIAYTP
                     FGEIMAGFFMGGIITFISFYIQAEFISSFIVYVSIPVMVLVGNLLLANSIRDLVPDKK
                     NGRLTLAILLGRKWATVLFAAAFLFSYVFEIALIFTQDAPWWTLLILLSLPEAIRAVR
                     RFIGKTSPITMVPAMKSTSKALTIFGITLALAYLLSLLSRNLFM"
BASE COUNT         2914 a         1771 c         2744 g         3185 t
ORIGIN      
        1 tatttctgga ggtttagctc agctgggaga gcatctgcct tacaagcaga gggtcagcgg
       61 ttcgatcccg ttaacctcca ttttttatgc cggcttagct cagttggtag agcaactgat
      121 ttgtaatcag taggtcgcga gttcgactct tgcagccggc accattaata ttaactttat
      181 gataatacat atttttattg tagagagccg ttagctcagt tggtagagca tctgactttt
      241 aatcagaggg tcgctggttc gaacccagca cggctcactt ttgcgggtgt ggcggaattg
      301 gcagacgcac cagatttagg atctggcgcc gcgaggcgtg ggggttcaag tcccttcacc
      361 cgcacttatt atggaatatg cggaagtagt tcagtggtag aacatcacct tgccaaggtg
      421 ggggtcgcgg gttcgaaccc cgtcttccgc tccatatttt atagcaacgc cggggtggcg
      481 gaactggcag acgcacagga cttaaaatcc tgcggatagt gatatccgta ccggttcgat
      541 tccggtcctc ggcactttta tttgcgccca tagctcaact ggatagagta cttgactacg
      601 aatcaagcgg ttagaggttc gactcctctt gggcgcactt tattaaacgg gaagtagctc
      661 agcttggtag agcacttggt ttgggaccaa ggggtcgcag gttcgaatcc tgtcttcccg
      721 atagtttaat cccttattat tatggggcct tagctcagct gggagagcgc ctgctttgca
      781 cgcaggaggt cagcggttcg atcccgctag gctccacttg cttcacattt aagtagaaaa
      841 tagttgcctt attattatgg cggtgtagct cagctggcta gagcattcgg ttcatacccg
      901 aaaggtcgtg ggttcgactc cctccgccgc tattttcaat cttggacctt tagctcagtt
      961 ggttagagca gacggctcat aaccgtccgg tcgcaggttc gagtcctgca aggtccactt
     1021 gtcactttat tattatcatg gaggaatacc caagtctggc tgaagggatc ggtcttgaaa
     1081 accgacaggc gggtaatacc gcgcgggggt tcgaatccct cttcctccgt ttttcacttg
     1141 tgatatgtgg actaaaattt aatattattg tcgcggggtg gagcagtctg gtagctcgtc
     1201 gggctcataa cccgaaggtc gtaggttcaa atcctgcccc cgcaatagtg gttccgtggt
     1261 gtaggggtta acatgcctgc ctgtcacgca ggagatcgcg ggttcaaatc ccgtcgggac
     1321 cgccattatg gcttggtagc tcagttggta gagcacttga ttgaagctca aggtgtcggc
     1381 agttcgattc tgtcccaagc cattcttttt ttaaacattt ttgccttatg gcggatatgg
     1441 cgaagtggtt aacgcacctg attgtggttc aggcattcgt gggttcgatt cccattatcc
     1501 gccctttgtt tttaaaaatt atattatgcg ggtgtagttt agtggtaaaa ctacagcctt
     1561 ccaagctgtt gtcgtgggtt cgattcccat cacccgcttt ttaccatgaa tatagtttta
     1621 ctggggccta tagctcagct ggttagagcg cacgcctgat aagcgtgagg tcgatggttc
     1681 gagtccattt aggcccattt tattccacag tagctcagtt ggtagagcaa tcggctgtta
     1741 accgatcggt cgcaggttcg agtcctgcct gtggagttat tctttcaata agaataagtt
     1801 ttttatatct ggggaagtac tcaagtggct gaagaggcgc ccctgctaag ggtgtaggtc
     1861 gctcgcgcgg cgcgagggtt caaatccctc cttctccgcc agatatggcc cgttggtcaa
     1921 gcggttaaga caccgccctt tcacggcggt aacacgggtt cgaatcccgt acgggtcatc
     1981 ctaaagaaca atgtcaattt gtgacattgt ttttttattt agtaaagttt tggaggtatc
     2041 taatgggggc taaagggaag ttttggattt tgacgatggt tgttgccatt tcaggattgt
     2101 cacagggggt tttattacct cttattgcga taatattaga agagaaaggt ataagtgcag
     2161 gaattaatgg gtttcatgct acgggaatct atttaggagt tttacttatt tctccattta
     2221 ttgaggcccc acttcataaa tatggttata agccgattat tttagttggg ggaggactag
     2281 ttgcggtttc gattttggct tttccaattt ggtttaattt atatttttgg tttatattaa
     2341 ggttgcttat tggtgtgggg gatcatatgt tacatttttc ttcgcagact tggattgggg
     2401 cgatgagtga tccaagtaaa cgtggccgga atatggctat ttatgggttg tttttctcat
     2461 taggatttgc gattgggcca caattggtta atttggcaaa aataaatgcg aacttgcctt
     2521 tctttttatc tggaatttta gttttgatag cttggggact cgtttggttt gttcgtaatg
     2581 actttgttgc tgaaaaggct gtaattcgaa aaatatcttt ttggggtagt ttgaaacgtt
     2641 tttcggatgt atttaaattg gcttgggtag cgatgattcc accgttttta tatggaattt
     2701 tggagactgg acttaatgcg acttttccgg ttgttgggtt gcgcgatggg ctcgatacga
     2761 tgatgatagc gatggttatt tcttcttttt cggtagggac gattattttt caggtgccta
     2821 ttgggattgt tagtgataag tttggacgag gaaaagtttt acctcttttg acgggagcag
     2881 gagcagttgt ttttatgttg acagcatttg ttaagatacc agttttatat gtggttttct
     2941 tctttgtttt ggggatttta cttggatctt tatactcgct tggattatct tatatgacgg
     3001 atttaacgcc acttgaattg cttccggctg ggaatatttt ggttggcatg tgcttcagtt
     3061 tggggagcat tattgggccg agcgcgactg gaatgatgat cgggattttt ggaaatcaaa
     3121 tattttattt tgtagtagcc ggaatccttg tgcttggctg tttgttgcta gtatttggag
     3181 ctaggaaaga tgcacttgaa aagaaaatgg gaaattaatg attgacagtt tttaggtgca
     3241 agtggtatga tgatttcaat ccaatttaag tgattaaaaa aactaaataa attactctta
     3301 ttatgagtgg tagagggact ggcccgttga aacccagcaa cctttcaatt cgttgaaaag
     3361 gtgctaaatc ctgcgaagtg tgatgcttcg agagataaga gagacttaaa aagtttcact
     3421 gtatttgtgt atcgaaactt ccaaacctct ctagttctct agggaggttt tttattggca
     3481 aaaaatggag aggataaggt gataagtatg gtaaaggcaa ttagttcaaa cttggggtat
     3541 ccgagacttg gagagaaacg tgaatggaaa cgtgcactag aaaagttttg gaatggcaca
     3601 atttcagaaa aggaattatt ggcggaaaca aagattctaa gattacatgc gctaaaaaaa
     3661 caacaagata aagggattga tttgattcca gttggtgact ttagttttta tgatcaagtg
     3721 cttgatacga gtgttacatt tgggattatt ccaaaacgtt ttcagcatga tggagggaaa
     3781 gtttcgctaa atacatattt tgatattgca cgtggtaaaa atgacgcggt ggcctctgaa
     3841 atgactaaat ggtttaatac gaactatcac tatattgttc cagaactcgc tgatgcggag
     3901 ccgaaagtgt tggataatcg ggcactatac tattacgaag aagcgaagaa agagcttggt
     3961 attgaaggaa aaccagtgct tgttgggcca attacttatt taaaacttgg aaaaggtagc
     4021 gatgcaaaaa gttttgaagt attgttagat aaatttattc cggcgtatgt agagattttg
     4081 aaagaacttg aggcagctgg tgccaagtgg gtgcaaattg acgagccata tcttgcaact
     4141 agttttgata aaaaagaaat tgcgttattt gaaaaagtat atcaagcgtt tcaaacggca
     4201 gttccaaatt tgaaaataga gttacaaact tattttgaaa gtttggatta ttatgaagag
     4261 gttgttaatt taccagttgc ggcgattggg attgactttg ttcatgatca tggtgattcg
     4321 ataaaagcgt taaaagctca cggatttccg gaagataagt atttagcggc cggtgtggtg
     4381 gatggacgga atgtttggcg tagtgacttg gatgctaaac tggaactact tacggagatt
     4441 gcgaattatg tggcggatgg aaaattgatt gttcaacctt ctaattcatt gctccatgta
     4501 ccggtgacga agttaagtga gccagatttg gatgaagtga ttcttggtgg cttatcattt
     4561 gctgatcaaa aattagagga gattactatt ttgacgaagg ctttgacgaa tggtgcggaa
     4621 agtgtggcag ctgaactaga agaatctcgt gcagcagtga cggcgctcaa tgaatctagt
     4681 catcgaaata atttagaagt tcaagaagcg attgctaatt tgaaaaatgt gcgggtggac
     4741 cgggagttgc catttgcgga acggattaag ttgcaacatg cttggttgaa attaccgctt
     4801 ttcccaacga caacaatcgg aagttttcca caatcaccgg aagttcggaa gacgcgcgct
     4861 gactggttaa aagggaacat aaccgatgca gaatataatg cttttattga aaaagaaacg
     4921 gctcgctgga ttaaaattca agaggatttg gatattgatg tattagttca cggggaattt
     4981 gaacggacag atatggtgga atatttcggg caaaaattgg ctggtttcca agcaactaaa
     5041 tttggatggg tacagtctta tggttcgaga gcggttcgtc caccacttat ctacggggat
     5101 gttgctttta cagaggaaat taccgtgaaa gaaagtgtct atgcccagtc gttaacgaag
     5161 cgcccagtga agggaatgct aacggcgccg gtgacaatta ttaattggag ttttgttcgt
     5221 gatgatgtgc cggagagtgt agttgcaaat caggttggac ttgcgcttcg taaagaagta
     5281 gaagcgttag aacgtaatgg cattaaagtt atccaagtgg atgagccagc tttacgtgaa
     5341 ggtttaccat taaaacaagc aagatggcaa aaatatttag atgatgcagt ttattcgttt
     5401 aaattaacga ctgcttcggt ccaaaatgat acgcaaattc atacgcatat gtgttattcg
     5461 gactttgacg atattattga tacgattagt gctctagatg cggatgttat ttcgattgaa
     5521 acgtcaagaa gtcacgggga gataatttcg acatttgagg aagtgacgta tgataaggaa
     5581 attggtcttg gggtttatga tattcatagt ccacgcgttc cgactgtgac tgaaatccaa
     5641 gacaatattc gccgagcgtt acgtgcaatt gatgcaaaac aattttggat taacccagat
     5701 tgtgggttga aaacgcgtaa agagcctgaa acgattgcgg cacttcaaga tatgattaaa
     5761 gcgactaaag aagttcgtgc ggaatatcaa gtattagaga aataaaggaa tggaggagag
     5821 gtaattatgg caaagctgaa acaagagacg atagcagcgc aaattggaaa tagaaaatgt
     5881 gaaagaacgg gtgctgtcaa tatgccagtc tacttctcta cagcttacca gcatgccgat
     5941 cttggagtgt caacggggta tgattatact agaactggaa atccgacgcg agatgcttta
     6001 caggaagcgc tcgcggaact agaaaatgga acgcatgctt ttgcaacgag ttcagggatg
     6061 agtgcgattc aacttgtttt ccagcttttt aaaactggcg aacatattat tagttcacag
     6121 gatttgtacg gggggacttt tagatatttt gaacagtttg gtgcgcaata taatattgga
     6181 ttttcgtatt gggacggggc ggagattgct gatttggaga aattagttcg tccggaaacg
     6241 aaggcgattt ttattgagac accaacaaat cctttaatgc aggaaacaga tattgcggct
     6301 gtgtctgaat gggcaggtgc gcatgattta cttgtgattg tggataatac attttataca
     6361 ccaattttac aacagccgtt aactttgggc gcggatattg tgattcatag tgcgacgaag
     6421 tatcttggtg ggcataatga tgtgcttgct ggggcggtta ttgtaaaaga ggagcgactt
     6481 gggaatttct tttttaatca gttaaatgcg acgggtgcag tgctatcgcc atttgatagt
     6541 tggttattga ttcgtggcct taagacgctg gttttgcgtg taagacaaca tcaagcgaat
     6601 gcagagaaaa tcgcggcgtt tttggaatca catgaattgg tggaggaagt tcgttatcca
     6661 gggcgcggtg ggatgattag tttctttatt caagatgcgg cgctcgtatc gccacttttg
     6721 aaagaacttg agttatttac ttttgcggaa agtttaggcg gggtggagag tttgattact
     6781 tatccaacaa cacaaacgca cgcagatatt cctgaagagt tgcggaattc ttatggactt
     6841 acagacaaat tattgcgcat ttcggttgga attgaagcta gtgaagattt gattgctgat
     6901 ttatctaagg cactcgatgc ggttttggaa ggggtgagcg ctcgtggcta atgaatatgc
     6961 gcaagatacg gctgtgatta aagcgagcct cgggattgat aaagagacag gtgcgcttaa
     7021 tacgccaatt catttatcgt ctactttcca tcagcatgac tttgataatt atcacgctta
     7081 tgattatgcg agaagtggga acccaacgag agaaaaagtg gaacaagcga ttgcggaact
     7141 ggaaggtggt acgaatggtt ttgcctttgc tagtgggatg gcggctgttt ctgcagcgct
     7201 ctttactctt tctaagggag accattttat cattgcgaaa gatgtgtacg gcgggacgtt
     7261 tcgttttgtg gagcaagtgt tgccgcgttt tgggattacg catacttttg ttgatacgac
     7321 aaatattgac gaagttgcga aggcatttca agcgaatacg aaactggttt acttggaaac
     7381 accttctaat ccgttgctgc atgtgacaga tattcggact gttgcaaaac ttgcgaaagc
     7441 gaatgggtgt tatacgtttg ttgataatac atttttgacg ccgttaattc aaaaaccgtt
     7501 agaattaggt gcagacttgg ttattcatag tgcgacgaaa tttcttggag ggcatagtga
     7561 tattttggcg gggctaattg tcaccaataa tcctaatctg gctgaagcag tgtacttttt
     7621 gcaaaattcg actggtgggg ttcttggagt gcaggattcg tggttgttat tgcgcggact
     7681 aaaaacactt tctgtgcgga tgaaggctgg gacggaaaca gcggagaaaa ttgcgctatt
     7741 tttaaatgcg gagccagatg tggtggcagt gcattatccg gggttacctt ctcatgcggg
     7801 ttatgacatt caagtggaac aggcgacaag tggcggggcc gttttatcgt ttgatttagg
     7861 cagtgaggaa gctgtgcgag aactagtaac acatttggaa ttgccggtat tttctgtgag
     7921 tttgggcgcg gtggagagta ttctttctta cccggctaaa atgtctcatg cggctgttcc
     7981 ggaagaggag cgtttggcgc aaggaattac gccaggatta ttacgttttt cagctggact
     8041 agaagatgcc gatgacttga ttgctgattt aaaacaagca ctttctttca ttaagaaggg
     8101 aagtgttgcg aaatgaattt aagaaaagat ttaagtgaaa aagtattaat tgctgacggc
     8161 gcgatgggca ctttgcttta ttcttatgga gtggatcgtt cgtttgaaga gctaaatttg
     8221 tctcatccgg aagatattgt tgctattcat aaagcatata ttggtgctgg ggcggatatt
     8281 attcaaacga atacgtatgg tgcaaattat attaaattag cgcgatatgg tttagaagat
     8341 gaagtgaagc gtattaatca agcagccatt cggttagcaa aggaagcggc aagagggact
     8401 ggaacgtata tttttgggac gattggtgga ataaatggcg cagtggatgc aagacttcca
     8461 gcggctccac tcgaagaaat caagcgaagt tttagggagc agctatactg ttttttgtta
     8521 gatggtgtgg atgcgatttt gctggaaacg tattatgatt tagatgagct taaaacagtg
     8581 ttgaaaattc ttcgtgagac tactgattta ccggtagttg cgaatgtctc tatgcatgag
     8641 ccgggtattc ttcaaaacgg gaaaaaattg ccggatgcgc tggaagaact tattgcgctt
     8701 ggagcggatg tagttggtat taattgccga cttggtcctt accatatggc gcgtgctctt
     8761 gaaacagtgc cgttgtatga taatgcttat ttggcagttt atcccaatgc tagtttgcca
     8821 gagatgcaag aaggaaaagt gatttatcag tctgacacgg attattttga acattatggg
     8881 gaggtttttc ggcaagaagg tgctcggatt attggtggtt gttgtggcac gacgccagat
     8941 catattcgtg ctttacgaaa aggccttgaa acaacaaaac ccattttgga aaaagaagtt
     9001 cggccgatat tggaacttgt tccagaagaa gtggaggatg tggattctgg tgaacgtttg
     9061 cttgataaag tgaaggaacg tttaacgatt ttggttgaac tagatccgcc gaggactttt
     9121 gatacgacga aattttttga aggagcccag gcacttgacg aggcaggcgt tgatgcgatt
     9181 acgatttcgg ataattcgct tgccacgccg cggattagta atatggcgct agcttcgatt
     9241 ttgaagcatg aatatggtat taaaccactc attcatttga cgacgcggga tcataatttg
     9301 gttgggatgc attcgcatgt gatgggattt cataaattgg ggctgcatga tgtgcttgcg
     9361 attacaggtg atccaactaa agtaggtgat ttccctggag cgtcttcggt gtttgattta
     9421 aggtctgtgg aattagttca gctaattaaa aagttcaatg atgggatttc ttatactggg
     9481 aaatcactga aagaaaaggc acgattccat gttggagcgg catttaatcc gaatgtgctg
     9541 aacttagaga aagcggttag gttaattgag cgaaaagtgg aatatggtgc cgattatatt
     9601 attacacagc caatttatga tgtgaataaa gctatcttat taaaagaagc cttgcaaaaa
     9661 gcaaatattg atgtgccact ttttattggg gttatgccat tattgtctag tcggaatgcg
     9721 gaatttctgc ataatgaggt tcccgggatt cgtttgacag atgatgtgcg ggagcgaatg
     9781 agagaggcgg aagagcacgg tcatgcaaat gaagaaggca tggcaattgc tcgtgaatta
     9841 gtggatgcga tttgtgagca tttccaaggg atttatatta ttacgccatt tttacgatat
     9901 gatttatcga tagaattagc gaaatatgcc caaaataaac agcaagtcca aattgggtct
     9961 aaataaaaaa actggttgtc acgaggacaa ccagtttttt tacatgaata aatttctgga
    10021 taatagactt aaaaggtaag caagggccaa tgtaatacca aagatagtta atgctttaga
    10081 tgtggatttc atggctggga ccattgtaat cggcgaagtt ttgccgatga aacgacgcac
    10141 ggcgcgaata gcttctggca aactaagtaa aatcagaagc gtccaccacg gagcatcttg
    10201 tgtgaaaata agggcgattt caaatacgta actgaataga aaagcagctg caaaaagaac
    10261 ggttgcccat ttgcgaccta gcaagatagc taaggttaaa cgaccatttt tcttatcagg
    10321 tactaaatca cgaatactat tagcaagtag caagttacca acgagcacca ttactggaat
    10381 cgatacgtat acgataaacg aactaataaa ttctgcttga atatagaagg aaatgaaagt
    10441 aataattccc cccataaaga atcctgccat aatttcacca aatggcgtat aagcaatagg
    10501 ataaggtcct cccgtataaa gaaagccaac aagcatacat attgcgccaa gtaatcctac
    10561 ataccaatta agttcaatgg ataaataaac accaccgaga attgataata tgta
//
LOCUS       DASDXX010000091        10522 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.091, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000091 DASDXX010000000
VERSION     DASDXX010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10522
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.091"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            17..754
                     /locus_tag="U0280_001751"
     CDS             17..754
                     /locus_tag="U0280_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM2271680.1"
                     /translation="MNTTIQQLVKHVSVREFKNERLSDEIKQHLLTAARSASSSHFVQ
                     SFSILEITDEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLENNRTLDGLRN
                     MESLLVSVIDATIAAQNMVIAAESLDLGICYIGGIRNDIEKVAELLNLPPFTIPVFGL
                     TVGVPEYKNQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWG
                     DKNVAFFEEIRRPEIAGFLKKQGFTLD"
     gene            965..1603
                     /locus_tag="U0280_001752"
     CDS             965..1603
                     /locus_tag="U0280_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEM2271681.1"
                     /translation="MKFLKKYGFYFLLLGVLSDFLTPYILGIFYPELNQMTRVMSVFG
                     DVASPVRGAFLVWSVVSGVFFVLALPAIYQSVVKTSRTLAILLASAIGLYGIGDCIFT
                     GLFSIDTEQASWTFSTWVHNIGSGLGYAGFLIFPLFLVILYRKTGDKTRSNIYLVLLI
                     VSLLSAGVYGLARIPAVNDLPVLDKIGFCQRISFFFNYLPIVVFGIDRIRKP"
     gene            complement(1608..3479)
                     /locus_tag="U0280_001753"
     CDS             complement(1608..3479)
                     /locus_tag="U0280_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM2271682.1"
                     /translation="MTISERQRSLLEKLNDSQKTVTAKALSEMLGVSSKTVRNDIVQI
                     NQSFSSTIIASKAGKGYFLTPNEQLSQMNLTKNNENLHFELLRHFIEQDHTNFYDLAD
                     QFFISESTLSRIIKELNAVIAEKDESLCIIRKNNELLTEGGEEEKRRIFNLFLNQEIE
                     NHQLSLDKYADYFDYCNLKQLSELIIAYHKKNDFFMNDFSTISFILHIAVLIERISMG
                     SYIERTALLEQDKTSLEMAEHLTETLEEELHIDIPTQELSYIARLYSGKLTTTSTIDA
                     QVFGSVVTRLLEAVDQNFHIDFSADEKIATYLVAHISALYKRANHKQYLTNPLTEELK
                     NKFPFIYNVSVYASAFIQKELAITFPDDEIAYIALHFLSASETINHGKKRKILLVSPY
                     GAGSQRLIHNQLKKIADFSIDLLVSQSIFDIKQFTLDKEIHLIITAEPLNLTTDIPVY
                     HYDLLLTETDLQKIKHILETKPKADSISRKFFKKELFFPKQNFKSKEEVITFLCEQLT
                     AFDYCDSDYVSKVFEREQLSSTCYGNYYAIPHAIQRSAKKNAVAVCALDKPIDWGGNR
                     VKLVLLLTMKEERDNSFEELFGQLVTILNERSFVKKLAKQEDFQQFIELCEQKTLDS"
     gene            complement(3578..4891)
                     /locus_tag="U0280_001754"
     CDS             complement(3578..4891)
                     /locus_tag="U0280_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2271683.1"
                     /translation="MRFNTISEKMDQYISPLANKLSQQRHLKATRDAFMSMLPITLFG
                     SIPIILKAAPVTDDTKNGFLLAWANFAEKYDLILNWISGITLGAMSLYICVGITYYLC
                     KHYHEDFLRPLMFSIAGFFMLVLNPIKMGWDGKEVDISFLDGRGILLSIFVAIVTVEG
                     YHWMRKKNVGRITMPDSVPASLSETFAALVPGIILMTFFSIIFIIFNLLDTTAIQFLY
                     EKMAPSFKAADSLPFTILSIFLVHLFWFFGVHDAALAGILGPIRDGNLSINAAEKMAG
                     QDLTNIFTTPFWTYFVIIGGSGSVLALAFLMMRSKSKQLSTVGKVGFLPSIFGISEPL
                     IFGTPLMLNPIFFFPFIFTSVFNGVITYLCMYFGIVGKTFAVFSWQMPAPIGAFLSTM
                     DWRAIVLVFILIFLNGLMYYPFLKVYEKNLVALEKEAEEENIAAN"
     gene            complement(4896..5186)
                     /locus_tag="U0280_001755"
     CDS             complement(4896..5186)
                     /locus_tag="U0280_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271684.1"
                     /translation="MKNIMLVCNAGMSTGMLAKKIEAASGNTLNVTAYSESEYTDYLD
                     GFDLVLIGPQIRFLMPQIKQAVSVPVHAISPVKYGIMDGKGVYEDIQKLIGG"
     gene            complement(5203..6594)
                     /locus_tag="U0280_001756"
     CDS             complement(5203..6594)
                     /locus_tag="U0280_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2271685.1"
                     /translation="MNNNFLWGGATASYQCEGAWDVDGKAESMWDYYLHEAGLENGDV
                     ASDHYHRYEEDIRMMKEGGQNSYRFSLSWPRIIKNRQGDINLKGIEFYQNLLDTCKKY
                     DIEPFVTLYHWDLPQYWEETGGWLDHDVCAAFEHYAKVCYDHFGDKITNWTTFNEPKW
                     FVANGYKIGNYPPGYQDTQKTMIAAYNVMYASALGVKAFKEGGYPGQIGIVHSYTPVN
                     GVDESIETKIAMRYADNYCNNWILDTAALGEFPVDLIAELAKSHDISFMKTDELQTIK
                     QNTVDFIGLNYYSRTLVKPYTGGETQLQFNHSGKKGESKVLIKNWFEQVKDPANETTE
                     WDTEIYPKGLQDGLIEAYERYQLPLYVTENGIGVREDVSVAKVDDAYRIAFMNDHINA
                     IFNAIDAGCDVRGYYAWSPFDLYSWKNGVEKRYGLVAVDFKNNQIRKPKASYYWFKEM
                     IESQGKLIKRREF"
     gene            complement(6587..6928)
                     /locus_tag="U0280_001757"
     CDS             complement(6587..6928)
                     /locus_tag="U0280_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2271686.1"
                     /translation="MTDSNELTTELDSMAIILHAGNAKSCAFEALKEVKLQNIEAFTQ
                     KITEAKDEIKLAHRAHAELLRKLSSENRMREVDLLLVHAEGHLSSTDIAVEMIRELGE
                     IYQWKWSLSNE"
     gene            7095..7379
                     /locus_tag="U0280_001758"
     CDS             7095..7379
                     /locus_tag="U0280_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271687.1"
                     /translation="MKKTVHGWEIISNLDIRLYQDEAGGVVILLDKDGFGDQVPVLLN
                     FDDDGVDIKALSHLTKSVRVLLDKKVRIEWHDEYFEERTQAMEYIEVERD"
     gene            7415..7969
                     /locus_tag="U0280_001759"
     CDS             7415..7969
                     /locus_tag="U0280_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271688.1"
                     /translation="MSKKLVSIIFLGICLLLVGCGKEVVDSKYTGKWKLESSGIGMSD
                     GSNYKETDAAGKVSLDLDIDAEGNVKELYIDDAVAITNSYKLKKKGDDEYQYDGTLIS
                     KKVYSYETESDKENVETMLKFLKSKNNVKITKNEQKGDEYHIDVKADEKDFVFSLEMQ
                     SGKLIFKKVDTKEKVLIKETYKKN"
     gene            8175..9440
                     /locus_tag="U0280_001760"
     CDS             8175..9440
                     /locus_tag="U0280_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3578 domain-containing protein"
                     /protein_id="HEM2271689.1"
                     /translation="MNLVALLKYMQENYGEQRTNYPMAGNEVAKKFKQGVKTAFETTL
                     LGEDYEISASIGTGGWANVPWIAVHDKEISTSVQEGVNLVYLFTNDYQGVYLSLNQGY
                     TYVNKKYKNTKLTLGKIARFWQGNLSTLTSENGFTIDPINLGREESRYTNLVKGYESC
                     NIYSKYYDIKDLEETDNDLLSQDLLQMLTVFKELKGHLMLDDKKGIEATIDFIINNGT
                     FNELSEKTKSKKIFEIEKKRTLVLGKEETRSRYSLVKEEKAPYITKRDYAKEAIRNTE
                     KGLQGEYLVINYERERLMKNTITKSYADKITHVSESGDGHGYDIISYDINPDASNEVI
                     EIYIEVKTTTGNRDAPFYLSDNELNVARIKGELYKIYRVYDYNTAPKLKIIDNLFDET
                     LEIKPINYIVKGVNQNDNNTKNQLPKNTL"
     gene            9397..10479
                     /locus_tag="U0280_001761"
     CDS             9397..10479
                     /locus_tag="U0280_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2271690.1"
                     /translation="MTTTLKTSYQKTPYKLGGNGPRNVGVLTEALQNIDDNLESDIYG
                     NGAVIANFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIH
                     EQDGLKELQQITPILLGTANRLLTIADIKSLREPVSSVLIELPQREIGGQLPAFEELE
                     EISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGVAGAILA
                     GNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSC
                     PGVKTVPEVPVSNMFHVYFEKSADEIGAVLTKIQDETGVGISGYLQEKSADVCAFEVS
                     VGDAFAEIPAKNLELVFECLEKELRL"
BASE COUNT         3185 a         1702 c         2353 g         3282 t
ORIGIN      
        1 atttgggggt tatgttatga atacaaccat tcaacaattg gttaaacatg tttcagtaag
       61 agaatttaaa aatgaaagat tatcagatga aatcaaacaa catttattaa cagctgcgag
      121 aagtgcatct agttcgcatt ttgtgcaatc tttttctatt ttagaaatca cagatgaaaa
      181 actaagaaag gaactagctg aaattacaaa tagtgcttct tatgtaaatc aaacggggac
      241 cttttatgtg tttgtagggg atttataccg acaatcaaaa cttttactgg agaataatag
      301 aactttagat gggttgagaa atatggaatc attactcgtc tcggtgatag atgctacaat
      361 tgcagctcaa aatatggtta ttgctgctga gtctcttgat ttaggaatct gttatatcgg
      421 tggaataaga aatgatattg aaaaagtagc tgaattgcta aacttaccac catttacgat
      481 acctgttttc ggattaactg taggcgttcc agaatataaa aatcaagtaa aaccacggct
      541 attactagaa aatcaagtag gagaaaatca atatccacat gaacaattta cggatttaaa
      601 agcgtatgag gaattgacca aagattatta tgctttacgt gaaaaaaatc agcatcaaac
      661 ttcatgggga gacaagaatg tagcgttttt tgaagaaata cgaagaccag aaatagctgg
      721 ctttttgaaa aaacaagggt ttacattgga ttaattaatt ttcgttgtag ggcgtataaa
      781 aaataatagt attaaattta tgagaggctg gaagagtatt ttttccggct ttttatttga
      841 ttggggctat tattttgtca tagaaagctt aaactagatt agatggggat agatttgtat
      901 aattaatatg gagttaaaat tacactaata tatccaaaat aaatttcata aaaggaggat
      961 ccaaatgaaa tttctaaaaa aatacggctt ttacttttta ttactcggcg ttttgagtga
     1021 ttttctaacg ccttacatac ttggaatttt ttacccagaa ttaaatcaaa tgacgcgggt
     1081 tatgagtgtg tttggggatg tggctagtcc ggtgcgggga gcgtttttgg tttggtcggt
     1141 ggtgtctggg gtgttttttg tgctcgcttt gccggcgatt tatcagagcg ttgttaaaac
     1201 ttcgcggact ttggcgattt tgcttgcttc tgcgattggt ttgtatggga ttggcgattg
     1261 tatttttacc gggttgttta gtattgacac ggagcaggcg agttggacat tttcgacttg
     1321 ggtgcataat attggctcgg ggctcggtta tgcgggattt ttgatttttc cgttgtttct
     1381 ggtcattctt taccggaaaa ctggcgataa aacccgcagc aatatctatc tagttttact
     1441 cattgttagt ttgctgtcgg ctggtgttta tgggcttgcg cggattcctg ctgtgaatga
     1501 cttgccggtt ttagataaaa ttggtttttg tcagcggatt agtttctttt ttaattactt
     1561 accgattgtt gtttttggaa ttgatcggat tagaaaaccc tagattttca ggaatctagg
     1621 gttttttgtt cgcaaagttc gataaattgc tggaagtctt cttgttttgc tagttttttg
     1681 acgaagctgc gttcgtttaa gatggttacg agttggccga ataattcttc aaaagagttg
     1741 tcgcgttctt ctttcatagt gagtaatagg acgagtttga cgcgatttcc tccccagtcg
     1801 attggtttat caagtgcgca tacggcgacg gcatttttct tcgcgcttcg ctggatggcg
     1861 tgcgggatgg cgtagtagtt gccgtaacag gtgctagata attgttcgcg ctcaaacact
     1921 tttgaaacat agtcggagtc gcagtagtcg aatgcagtta actgttcgca aagaaacgta
     1981 attacttctt cttttgattt gaagttttgt tttgggaaga acagctcttt tttgaaaaat
     2041 tttctggaaa tcgaatcggc tttgggctta gtttctaaaa tgtgcttgat tttctgcaaa
     2101 tctgtttctg ttaaaagtaa atcgtaatga tagactggga tgtcagttgt taggtttaat
     2161 ggttcggcgg tgataattaa atggatttct ttgtctaagg tgaactgctt tatatcaaaa
     2221 atagattgag aaacgagcaa gtcaatcgaa aaatcggcaa ttttcttaag ttgattatga
     2281 attaaacgtt ggctacctgc gccgtacggt gaaaccaaga ggatttttct ttttttaccg
     2341 tgattaatcg tttccgaagc ggataaaaaa tgtagcgcga tataagcgat ttcgtcatct
     2401 gggaaagtga tcgcaagctc tttttgaata aaggcagagg cataaacact gacattataa
     2461 ataaatggga acttgttttt taattcttca gtgagtgggt tggttaaata ttgtttgtga
     2521 ttggctcttt tataaagggc tgaaatgtga gccactagat aggtggctat tttttcgtca
     2581 gctgaaaagt caatatggaa attttggtcc actgcttcaa ggagccgagt gacaacgctg
     2641 ccaaaaactt gtgcgtcaat ggttgaagtt gtcgttagtt tgccggaata aagccgggcg
     2701 atatagctta gttcttgggt tggaatatcg atgtgcagtt cttcttctaa cgtttcggtt
     2761 aggtgctccg ccatttcaag gctagtttta tcttgctcga gtaaagcggt tcgctctata
     2821 tagctgccca tactaatgcg ctcaattaaa acggcgatat gcaagatgaa cgaaatcgtt
     2881 gagaaatcat tcataaaaaa atcgttcttt ttgtggtagg caataataag ctcggaaagt
     2941 tgctttagat tgcaataatc aaagtaatcg gcgtatttat ctaggcttaa ttgatggttt
     3001 tcgatttcct gattgaggaa tagattgaag atgcggcgct tttcttcttc gccgccctcg
     3061 gttagtagtt cgttgttttt tcgaataata catagcgact catctttttc agcgataacc
     3121 gcgttgagct ctttaataat acgagataac gtcgattcgc taatgaaaaa ttggtccgct
     3181 aagtcataga aattagtatg atcttgttcg ataaaatggc gtaataattc aaaatgtaga
     3241 ttttcgttat ttttggttag attcatttgt gaaagctgct cgtttggtgt tagaaagtag
     3301 ccttttccag cttttgatgc gatgattgtg gaactaaatg actggttaat ttgcacaatg
     3361 tcatttcgca cagttttgga agaaacgcct aacatttctg aaagtgcttt tgctgttact
     3421 gtcttttggc tgtcgttaag cttttctaac aatgaacgtt gcctttctga aatagtcatt
     3481 atatcccccc taattctccc ttaacctatt gttattatac aacaccaaat agagaaagag
     3541 acgagttttt ttgtcccaat ctctatttaa gtggctatta attagcagcg atgttttctt
     3601 cttcggcttc tttttctaaa gcgacaaggt ttttctcata cacttttagg aatgggtagt
     3661 acattaggcc gtttaagaaa atcaggatga atacgagaac gatggctcgc cagtccatgg
     3721 tggatagaaa tgctccaatt ggtgcgggca tttgccagga gaagacggcg aacgtttttc
     3781 cgacaatccc gaaatacata caaagatacg tgatgacacc attgaatacg gatgtgaaaa
     3841 tgaacgggaa gaagaaaatc ggattcagca ttagtggtgt tccgaaaatt agcggctcag
     3901 aaattccgaa tatggaaggt aagaagccga ctttcccgac ggtgcttagt tgtttggact
     3961 tggatcgcat cattaaaaag gcaagtgcga gaacggaacc agaaccaccg atgataacga
     4021 aatatgtcca gaatggtgtc gtgaaaatat tcgtcaaatc ttgaccagcc attttttcag
     4081 cggcgttgat tgaaaggttt ccgtcacgaa ttgggcctag aattccggca agtgcggcat
     4141 cgtggacacc gaagaaccag aataagtgaa ctaggaaaat acttagaatc gtgaatggta
     4201 agctatcggc tgctttgaag ctcggcgcca ttttttcata taagaattgg atggcagttg
     4261 tgtctagtag gttgaaaatg ataaagataa tcgagaaaaa ggtcattaaa ataataccag
     4321 gaactaaggc tgcgaatgtc tcggatagtg aggctggaac gctatcgggc atggttattc
     4381 gaccgacatt tttcttgcgc atccagtgat aaccttctac ggtaacgatg gcgacgaaaa
     4441 tcgagagtaa tattccgcgt ccatcaagga aactaatgtc gacttctttg ccgtcccaac
     4501 ccattttgat tgggttaagt acgagcataa agaaaccggc gatagaaaac atgagtgggc
     4561 gtaagaaatc ttcgtggtag tgtttgcata aataatacgt gataccgacg caaatatata
     4621 acgacatggc gccaagtgtg attccgctaa tccaatttag gattaaatca tatttttcag
     4681 caaagttagc ccaagcaagc aggaaaccat ttttcgtatc atctgtgact ggagccgctt
     4741 tcaaaataat cggaattgaa ccaaacaatg taattggcag catggacata aaggcatctc
     4801 tggttgcttt caaatggcgt tgctggctaa gtttgttagc cagcggggaa atatattgat
     4861 ccattttttc gctaatggta ttaaatcgca tgtttttatc ctcctattaa tttctggatg
     4921 tcttcgtaaa cccctttgcc atccatgatg ccgtatttta cgggtgaaat ggcatggact
     4981 gggacgctga cggcctgttt aatttgtggc ataaggaaac ggatttgagg cccgataaga
     5041 acgaggtcga aaccgtccaa ataatcggta tactcggatt cgctataagc agtgacgttt
     5101 aatgtgttgc cagaagcggc ttctattttt ttcgcaagca ttcctgtaga cataccagca
     5161 ttacaaacta acatgatatt tttcattttc ctgctccttt ttttaaaatt ctcttcgttt
     5221 gatgagtttt ccctgacttt caatcatttc tttgaaccag tagtaggaag cttttggttt
     5281 tctgatttgg ttgtttttga aatcaactgc tacaagtccg taacgctttt cgacaccatt
     5341 tttccaagag taaaggtcga acggggacca agcgtagtag ccgcgaacgt cacaaccagc
     5401 atcgattgcg ttgaaaatgg cgttaatatg gtcgttcata aaggcgattc ggtaggcatc
     5461 atctactttt gccactgaaa catcttcgcg aacaccaatg ccgttttctg tcacataaag
     5521 tggtaattga tagcgttcgt aagcctcgat taagccatct tgtaagcctt ttggataaat
     5581 ttctgtgtcc cattcggttg tttcgttggc gggatctttc acttgttcga accagttttt
     5641 gatgagaact ttactttcgc cttttttacc gctgtggttg aattgtagtt gggtttcgcc
     5701 gccagtgtat ggtttaacga gcgtgcgcga atagtaattt aagccgatga agtcgacagt
     5761 gttttgttta attgtttgta gttcgtctgt tttcataaag ctgatgtcgt gcgattttgc
     5821 tagttcggca atgaggtcga ccgggaattc gccaagtgcg gctgtgtcga gaatccagtt
     5881 gttgcaatag ttatcagcgt agcgcatcgc gattttcgtt tcgatacttt catcgacacc
     5941 gttcaccggc gtgtagctgt gaacaatacc aatttgccct gggtagccac cttctttaaa
     6001 agccttcacg cctaaagcac tcgcgtacat tacattataa gcggcaatca tcgttttttg
     6061 cgtatcttga taaccgggcg ggtagttgcc gattttatat ccgttagcaa caaaccattt
     6121 cggctcgtta aacgtagtcc aattcgtgat tttatcgcca aaatggtcat aacaaacctt
     6181 ggcataatgc tcaaatgcgg cgcaaacatc gtgatccaac cagccaccag tttcttccca
     6241 atattgcggc aaatcccaat gataaagtgt cacaaacggc tcaatatcat attttttaca
     6301 cgtatctagc aagttttggt aaaattcgat cccttttaag ttgatgtcac cttgcctatt
     6361 tttaataatc cgcggccaag ataaggaaaa acgataggaa ttttgcccgc cttctttcat
     6421 catccgaatg tcttcctcgt agcggtggta gtgatcgctc gccacatcgc cattctcaag
     6481 acccgcttcg tgcaagtagt agtcccacat cgattccgcc ttgccatcca catcccaagc
     6541 accttcacat tgataagagg ccgttgcacc tccccataaa aagttattat tcattagata
     6601 aactccattt ccattgataa atttctccca gttcccgaat catttccacg gcaatatccg
     6661 tagaagacaa gtgaccctcc gcatgaacaa gcagtaaatc cacctctctc attcggttct
     6721 ctgaagatag ttttcgtaaa agttccgcgt gcgctcggtg cgccagttta atctcatctt
     6781 tcgcttcagt aattttctgc gtgaaagctt cgatgttttg cagttttact tctttcagtg
     6841 cctcaaaagc acaacttttc gcattcccgg cgtgtaagat gatcgccatg gaatccagtt
     6901 ctgttgttag ttcgttgcta tctgtcacgt aaagacctcc ttttgatttg tctttactat
     6961 agctggaaaa atgggggagg tgaaattatt atttgccact ttggaagtgg aaattggttt
     7021 aggtttggaa attattgatt actaggatat gatgatagtt agagagaaaa tatgacatag
     7081 gagatgaata aatgatgaaa aaaacagtac acgggtggga aataatatct aatttagaca
     7141 tacgattata ccaagatgaa gctggtgggg ttgtgatttt actagataaa gatggttttg
     7201 gtgatcaagt gccagtgcta ttgaattttg atgatgatgg agtagatata aaagctcttt
     7261 cgcatttaac aaaaagtgtt cgagttttgc tggataagaa ggtgcggatt gaatggcatg
     7321 atgagtattt tgaagagaga acgcaagcaa tggagtacat cgaggtggaa cgggattaac
     7381 cgttaattat atacaaaaaa aggagagcaa caagatgagc aaaaagttag taagtattat
     7441 tttcttaggg atttgtcttt tgttagttgg ttgtggtaaa gaggttgttg atagtaagta
     7501 taccggaaaa tggaagttgg aatcgtcggg gattggtatg agcgatggat caaattacaa
     7561 ggaaacggat gcagcgggta aagttagtct tgacttggac attgatgcag agggaaatgt
     7621 aaaagaattg tatattgatg atgcagttgc tataactaat tcttataaat taaagaaaaa
     7681 aggtgacgat gaatatcaat atgatggtac attgattagc aaaaaagtat acagttatga
     7741 aactgaaagt gataaagaga atgtagaaac aatgctaaaa tttcttaaat ccaagaataa
     7801 tgtcaaaata accaaaaatg aacaaaaagg ggatgaatat cacatagatg tcaaagcaga
     7861 tgaaaaagat ttcgtattct ctttagaaat gcaaagtgga aaattaattt tcaaaaaagt
     7921 cgatactaaa gagaaagttt tgattaagga aacctacaag aaaaattaaa ttattagaag
     7981 cgagaagcgg aagtccgttg taaccaccta ttttttaaaa tttatttgtg aagactattc
     8041 tttcgagggt cctcgggagg atagtttttt tgttgaacaa gcatatttta tagttaaatt
     8101 cacaacaaat ctacattctt aggtataatg tatacgagaa gatgaaaata cattatataa
     8161 aaaggatgtt tgtgatgaac ttagtggcat tattaaaata catgcaagaa aactatgggg
     8221 agcaaagaac caattatcca atggctggga atgaagtcgc aaaaaaattt aagcaaggtg
     8281 ttaaaacagc ctttgaaacc accttattag gagaagatta cgaaatatct gcatccattg
     8341 gtacaggcgg ttgggcaaat gtcccttgga tagctgtgca tgataaagaa attagcacaa
     8401 gtgtacaaga gggagttaat ctagtttatt tgtttacaaa cgattaccaa ggtgtttatt
     8461 tatctttaaa tcaaggatat acatatgtaa ataaaaaata taaaaatact aaattgactt
     8521 tagggaaaat tgctcgtttt tggcagggaa atttatctac gttaacatct gaaaatggtt
     8581 ttacaattga cccaattaac ctcggccggg aggaatctcg ttatactaat cttgtgaaag
     8641 gttatgaatc ttgtaatatt tatagtaaat attatgatat taaggatttg gaagaaactg
     8701 ataatgattt attatcacaa gatttgctgc aaatgctcac tgtatttaaa gaattaaaag
     8761 gtcatttaat gttggatgac aaaaaaggta tagaagctac aattgatttc ataattaata
     8821 atggaacttt caatgaatta agcgaaaaaa caaaatcaaa gaaaatcttt gaaatagaaa
     8881 aaaagcgcac attagtttta ggtaaagaag aaacacgttc aagatattcg ttagttaagg
     8941 aagaaaaagc accttacatc actaaaagag attatgcgaa agaagctatt agaaatacgg
     9001 aaaaaggatt gcaaggagag tatttggtaa ttaattatga aagagaaagg ttaatgaaga
     9061 atactattac aaaatcttat gcagataaaa tcactcatgt ttctgaaagt ggtgatgggc
     9121 atggatatga tattatttcc tatgacataa atccagatgc atcaaatgaa gtgattgaga
     9181 tttatatcga agttaaaaca acgacaggaa atagagatgc tccattttat ttatcagata
     9241 atgaattaaa tgttgcgaga ataaaaggtg agctttataa aatttatcgg gtatatgatt
     9301 ataatacagc gccaaaactg aagattattg ataatttatt cgatgagacc ctagaaataa
     9361 aaccaatcaa ttatatcgta aaaggagtga accaaaatga caacaacact aaaaaccagc
     9421 taccaaaaaa caccttataa actaggcggg aacggtccgc gcaatgtagg tgttctgaca
     9481 gaagcacttc aaaatattga tgataaccta gaaagcgata tttacggaaa tggcgcagtt
     9541 attgcaaact ttgaaacaaa aatcgcgaaa attctcggga aacaatctgc ggtgtttttc
     9601 ccaagtggga cgatggctca gcaaatcgcg ttaaggattt gggctgaccg gaaagagaat
     9661 cggcgcgtgg catatcatcc gctttcgcat ttggagattc acgagcaaga cggactaaaa
     9721 gagttgcagc aaatcacgcc aatattactt ggaacagcga atcgactttt gacaattgct
     9781 gatattaaaa gcctgcgcga gccagtttct agtgtgctta tcgaacttcc acaacgagaa
     9841 attggtgggc agctgcctgc ttttgaagag cttgaggaga tttcggagta ttgccatgaa
     9901 cagggtattt cgttgcatct tgacggggca cggttatggg aaatcacgcc gttttatcag
     9961 aagtctgcgg aagaaatttg tgcgctgttt gatagtgtgt atgtgtcgtt ttacaaagga
    10021 attggcgggg ttgctggggc gattctggct gggaatgatg attttgtgca agaggcgaaa
    10081 atctggaaac gacggtatgg cggggatttg attagtttgt atccatatat tttgtccgcg
    10141 gattattatt ttgaaaaacg gattgggaaa atggcggaat attttgaggc ggcgaaagga
    10201 ttggcggagc gctttaattc gtgtccgggc gtgaagactg tgccggaagt gccggtttct
    10261 aatatgtttc atgtttattt tgagaagtcg gctgatgaga ttggggcggt tttgacgaag
    10321 attcaggatg aaactggggt tgggatttcg gggtatttgc aggagaaatc ggcggatgtt
    10381 tgtgcgtttg aggtttcggt tggggatgcg tttgcagaga taccggcaaa aaatttagaa
    10441 ctagtttttg aatgtttgga aaaggaactt agactataaa tttggatata aaaagacaag
    10501 ctattttcta tagtagcttg tc
//
LOCUS       DASDXX010000092        10463 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.092, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000092 DASDXX010000000
VERSION     DASDXX010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10463
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.092"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(135..1907)
                     /locus_tag="U0280_001762"
     CDS             complement(135..1907)
                     /locus_tag="U0280_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271691.1"
                     /translation="MKEFKQISRFFWHYLRGYKPQLFVILIAVVFATYLQVKAPQYIG
                     NAVQELGDYVVNLMQTGVDDKSDFIHIIWMLILCYVLLAAATFIQSIIMTGVAGKSTN
                     RMRIGLFRKMEKLSIRFFDSRNDGEMLSRFTSDLDNISNTLNQALIQVLSNVALMIGV
                     IIMMFQQNVELAFVTLISAPFAIIIATVIIRKARKFVDIQQDELGVLNGYIDEKISGQ
                     KIIITNGLEEETIDGFVKQNNIVKNATYKGQVYSGLLFPMMQGISLLNTAIVIFFGGW
                     LALNGDLERTAALGLIVMFVQYSQQFYMPLTQISSQYSLLQLAITGARRVSEVFAEEE
                     EVERENLQTIDGINKGVKLDHVDFAYDPAKPVLKDVSIDVSKGKMVALVGPTGSGKTT
                     VMNLLNRFYNVDGGAILFDDIDIRDIRLDSLRKQVGIVLQDSVLFTGTIRDNIVFGKP
                     EASDDEVINAAKQANIHDFIMNLEKGYETEISDENNIFSVGQKQLMSIARTIITNPSL
                     LILDEATSNVDTVTESRIQKAMDNVISGRTSFVIAHRLKTILDADHIVVLHQGEVIEQ
                     GNHDELMKAEGFYSELYHNQFVIE"
     gene            complement(1907..3628)
                     /locus_tag="U0280_001763"
     CDS             complement(1907..3628)
                     /locus_tag="U0280_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271692.1"
                     /translation="MKVLFHHLKKYKLQATLSTLFVVVMVISQLWQPKLLQQVLDAIM
                     KDDMDEISSIGALLIGIAAVGLIAGILNTILSAKVAQGVGADIRESSFRKIQTFSFSN
                     IEKLSTGNLVVRQTNDITQVQNLVMLSLQSLTRIPIMFIGAFILAMFTLPELWWVIIV
                     LVVLVVLIVVFTFGSMGKHFAIIQKLIDRVNSIAKENLAGMRVVKSFVQEDNEISRFT
                     TVSDKLTRHTIIVGTLFSVMIPAFMLVSNLAIVVSIFFVGDMAADNPEVIGAIASFMN
                     YLMQIMMAIIIGGMLMMMASRALISLKRITEVLETEPDITYNESAPEQDLEGTVEFRN
                     VSFKYDGDDTPALEDISFKASVGEMVGIVGATGSGKSTLAQLIPRLYDPTEGEVIIGG
                     TNLKDINKKTLRSTVSFVLQRAILFSGTIADNLRHGKKDATAEEMEHASKIAQAKEFI
                     DKQAKLYEAPVSERGNNFSGGQKQRLSITRGVIGSPKVLILDDSTSALDAKSEKLVKE
                     ALNKELDDTTTFIIAQKISSVIQADKILVLDKGKLVGVGSHKELLKENETYREIYDTQ
                     KGKEVTA"
     gene            complement(3790..5496)
                     /gene="pabB"
                     /locus_tag="U0280_001764"
     CDS             complement(3790..5496)
                     /gene="pabB"
                     /locus_tag="U0280_001764"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HEM2271693.1"
                     /translation="MSLLRFDFEGDTKIFENPLYELVTHDLAEVLPIMKAAEEAQKSG
                     KYVAGFVSYEAAPAFRSNLKTKKPSGNMPLVWFGVYDNFNDTATETPDSSPLSFKMNT
                     SFPEYAEKIEQIKAEIAAGNTYQINYTVRLQSDVPNSFSSQATYETLQQIGKANYTAL
                     LSTSDFEIISASPELFFKWKENLLTTRPMKGTIRRGITEQADLEAHDWLKNDPKNRAE
                     NVMIVDLLRNDLGMIAVPGSVKVPKLMTLEPYPTVWQMTSTVTAETPPETDLTAVFKA
                     LFPCGSITGAPKARTMEIISELEDSPRGVYCGAIGFLEPNGNAIFNVPIRTIAIADNK
                     ATYGVGGGIVWDSEAASEFSEIHAKSAILEKTTKFSLIECLRIENGELFRTEYHLKRL
                     QTSADFFGIPFNREETEKLWTKTAQKNTTDTYKMRFLLHPDGAHDLELTRIDTKNKRI
                     TAQLADKPVPSNDLFLYHKTTHRKVYENLKNTQTEETLLWNERGELTEFINGNIVLGI
                     NGCFFTPPVTSGLLSGTMRAELLAKNKISEKTLAKKDLLEADYVWLINSVRGFIEVEI
                     KQ"
     gene            complement(5493..6065)
                     /locus_tag="U0280_001765"
     CDS             complement(5493..6065)
                     /locus_tag="U0280_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEM2271694.1"
                     /translation="MILIIDHNDSFTYNLYQYFLELQEEVQVVSATNFSLEIFQQLVP
                     EMVVLSPGPGSPEDFPVSLALLGKIQVPILGICLGHQMIGHFFGAKVVPAKVPVHGKT
                     SIISHTGEGLFAELAPKFQVTRYHSLVIDPATVPANLKVTALTEDGVIMGLAHVSKPI
                     HSVQFHPEAILSENGHAILENFIRLGRNVK"
     gene            6195..6614
                     /locus_tag="U0280_001766"
     CDS             6195..6614
                     /locus_tag="U0280_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEM2271695.1"
                     /translation="MKNELEDKILAILEQHQVGVLTSVQGDYPHARYMTFLHDGLTLY
                     TPSGKELPKTEEVRRNPHVSVLIGYESPGSAFLEINGLASLEEDESIKERIWENISKE
                     WFQGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG"
     misc_binding    6667..6889
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            6948..8231
                     /gene="serS"
                     /locus_tag="U0280_001767"
     CDS             6948..8231
                     /gene="serS"
                     /locus_tag="U0280_001767"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEM2271696.1"
                     /translation="MLDVKLLRNNFDEVKQKLQNRGEDLGEFEKFGELDKRRRTLIVE
                     TEALKSQRNEVSQEIAKLKREKQDADAKIEEMRVVGDRIKTLDIELREIDEKLDMILM
                     SIPNIPHESTPVGESEDDNVEIRKWGEVREFDFEPKAHWDLGTDLDILDFENAAKVTG
                     SRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPKFEEDA
                     FLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLI
                     RQHQFNKVELVQFVKPEDSYAALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKK
                     YDLEVWIPSYNSYREISSCSNFESFQARRANIRFRREPGSKPEYVHTLNGSGLALGRT
                     VAAILENYQDADGSVRIPKVLQGYMGGIEKIELPK"
     gene            8251..8502
                     /locus_tag="U0280_001768"
     CDS             8251..8502
                     /locus_tag="U0280_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HEM2271697.1"
                     /translation="MANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN
                     DSSVCLSELYALEGAVQGIRWHGLDEAKKIELKKFHQSL"
     gene            complement(8556..10283)
                     /locus_tag="U0280_001769"
     CDS             complement(8556..10283)
                     /locus_tag="U0280_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271698.1"
                     /translation="MDQKKYSWRKFFQLLISAKPANWIIFCALFASVITTVAGLVVPL
                     FTKNLIDGFSIASLDVKMIALIVLAFVLQAITNGFSIFLLNYMGQKVVATIRERLWKK
                     IVHLPVSYFDNTKTGEMVSRMVNDTVVVKELIADHFPQFVTGIISVVGAIIILFFMDW
                     KMTLIILVAVPITALVVAPLGQKMFKISKGLQNETADFTGSISQTLSEARLVKASNAE
                     TLETEAGHQGINRLFGFGIREAKVVAVLGPLIFFVVMGVIVGIIGYGGIRVSAGTMTT
                     GTLIAFLLYLFQIIVPVTSFATFFAQLQKAKGATERIADILNETEEDFDAGKKVDVSG
                     KTIRASDISFSYNEGEPILKHVSFDTKPGEVIAFAGPSGGGKSTLFAILERFYQPKTG
                     EILVGDIPLSEISINSWRTQIGYVSQESAMLSGTIRDNLCYGLDREITEDELWNVAKL
                     AYADGFISELPDKMATEVGERGVKLSGGQRQRIAIARAFLRNPNILMLDEATASLDSQ
                     SEQIVQQALANLMEGRTTFVIAHRLSTIVNADQILFIEHGEITGRGTHSELVASHPLY
                     ASFAEQQLK"
BASE COUNT         3168 a         1992 c         2156 g         3147 t
ORIGIN      
        1 agcaaaaaaa agatgctagc gcaattgaaa tttaaagcga gcccttactt gaaaaagata
       61 aggactcgct ttaaatttac tagttagaca acgttttgcc tgccagataa atcactcttt
      121 ggaagagtga ttatttattc aataacaaac tgattatgat aaagctcaga ataaaatcct
      181 tccgccttca tcagctcatc atggttacct tgttcaatca cttcaccttg atgtagcacg
      241 acgatatggt cggcatcgag gatggttttt aaacggtggg caatgacgaa gctagttcgg
      301 ccagagatta cgttgtccat agctttttgg atgcggcttt cggttacggt atctacatta
      361 cttgtcgctt catctagaat tagaagagac ggatttgtaa taatagttct cgcaatactc
      421 ataagctgct tttgaccaac gctgaaaata ttgttttcat cactgatttc tgtttcataa
      481 cctttttcta ggttcataat gaagtcgtgg atgttagctt gttttgcagc gttgattact
      541 tcgtcgtcgc ttgcttccgg cttaccgaaa acaatgttat cacgaatggt tcctgtgaat
      601 agcacggaat cttgtagcac gataccgact tgtttacgaa gggaatctag gcgaatatcg
      661 cggatgtcga tatcatcaaa gagaatcgcg ccaccatcga cattatagaa gcgattaaga
      721 aggttcataa cagttgtttt accagagcca gttggaccga caagagcaac cattttacct
      781 ttacttacat caatcgaaac gtcttttaga actggttttg cagggtcata agcaaaatct
      841 acgtgatcta gtttgacacc tttattaata ccatcaattg tttgtaagtt ttcgcgttct
      901 acttcttctt cctctgcaaa tacttcacta acacggcgcg caccagtgat tgctagttgt
      961 agcaagctgt actgggacga aatttgtgta agtggcatat agaattgttg tgaatattga
     1021 acgaacataa cgattaaacc aagagcggct gtgcgttcaa ggtcgccgtt tagagctaac
     1081 catccaccga agaagataac aatagctgta tttaataggg aaataccttg catcattggg
     1141 aaaagtaaac cggagtaaac ttgacctttg taagttgcgt ttttaacgat attgttttgt
     1201 ttaacaaagc cgtcaattgt ttcttcttct aagccatttg tgataataat tttttgacca
     1261 gagatttttt cgtcaatgta gccgttaagt acgcctagtt catcttgttg aatatcaacg
     1321 aatttgcggg cttttcgaat aatcactgtc gcaataataa tcgcaaatgg agcagatatt
     1381 agagtaacga aggctagttc cacgttttgt tggaacatca tgatgataac accaatcatt
     1441 agcgcgacgt tggatagtac ttggatcaat gcttggttta gtgtgttgga aatattatct
     1501 aagtcactag tgaaacgact aagcatttcg ccatcattgc gactatcgaa gaaacggatt
     1561 gatagttttt ccatcttgcg gaaaagtcct atacgcattc tgttcgtcga tttaccagct
     1621 acccctgtca taatgatact ttggataaaa gtggcagcag cgaggagtac gtagcagaga
     1681 atcagcatcc aaatgatatg gatgaagtca ctcttgtcat caacacccgt ttgcattaaa
     1741 ttaacaacgt aatctccaag ttcttgaacg gcgttaccaa tatattgtgg tgcttttact
     1801 tgaaggtatg tcgcaaaaac tacagcaatt aaaatgacaa aaagttgagg tttatacccc
     1861 cgcagatagt gccagaaaaa gcgactaatt tgtttaaact ctttcattat gcggttacct
     1921 ccttgccttt ttgagtgtcg taaatttcac ggtaagtttc attttctttt agaagttctt
     1981 tatgggaacc gacgccaacg agtttacctt tatctaacac gagaatttta tctgcttgaa
     2041 taacagaaga gattttttgt gcaatgatga aagtcgttgt gtcgtctagc tctttattca
     2101 gcgcttcttt cactaatttc tcggattttg catcaagcgc gcttgtgctg tcatcgagga
     2161 ttaggacttt cggggaaccg ataacgccac gtgtaatcga aaggcgttgt ttttgtccac
     2221 cggagaagtt gtttccacgt tcggaaacag gagcttcata aagttttgct tgtttgtcga
     2281 taaactcttt cgcttgtgct attttacttg cgtgttccat ttcttctgca gttgcgtctt
     2341 ttttaccatg acgtaaattg tctgcaattg ttccggaaaa aagaatcgcg cgttggagca
     2401 cgaaggaaac agtgctgcga agcgtttttt tgttgatatc ttttaggttc gttccgccga
     2461 taataacttc accttccgtt gggtcgtaaa gtcgggggat tagttgggca agagtggatt
     2521 taccagaacc tgttgcacca acaataccga ccatctcacc aacacttgct ttgaatgaaa
     2581 tatcttccag agcaggcgta tcgtcaccgt cgtatttgaa actaacgtta cggaattcaa
     2641 ctgtaccttc taaatcttgt tctggcgcgc tttcattgta agtaatatct ggttctgttt
     2701 ccagaacttc ggtaatacgc ttcaaagaaa taagcgcacg agaagccatc atcatcagca
     2761 taccaccaat aataattgcc atcataattt gcattaagta gttcatgaat gatgcgatag
     2821 ctccgataac ttcaggatta tctgcagcca tatcgcctac aaagaaaata gaaacaacaa
     2881 ttgctaagtt agaaacgagc ataaatgcag gaatcattac agagaaaagc gttccaacga
     2941 tgattgtgtg gcgagttaat ttgtcactga cagttgtaaa gcgactgatt tcattatctt
     3001 cttgcacgaa agatttaact acgcgcatgc cagcaaggtt ttcttttgca atagaattca
     3061 ctcggtcaat taacttctga ataatggcaa aatgtttacc catagacccg aatgtgaata
     3121 caacaatcag aacaacaaga acaacgagta caataattac ccaccataat tcaggtaaag
     3181 taaacatcgc taaaataaaa gccccgatga acataatcgg aattctcgta agcgattgta
     3241 gtgaaagcat cactaagttt tgaacttggg taatgtcgtt tgtttgtcga acaactagat
     3301 tacctgtcga aagtttttcg atgttgctga atgaaaatgt ttggatttta cggaaactag
     3361 attcacgaat atctgcaccg acgccttgag cgactttggc tgaaagtatt gtgtttagga
     3421 tcccggcgat aaggccgact gcggcaatac cgattaaaag tgcgccgatg gatgagattt
     3481 catccatatc atctttcatg atggcgtcta ggacttgctg aagtaacttt ggttgccata
     3541 gttgtgagat aaccatgact actacaaaca gtgtagatag tgtcgcttgt agcttgtatt
     3601 tttttagatg gtgaaacaat actttcatga ttttcctccc ttggaaaacg gaaataaaaa
     3661 cgtgcgaaca catattctaa tatagattgt gaaaatttgc aagtaatttt ttcacaaatt
     3721 ataaatgtgg cgaaaatatg gcgaatttga caaattattt catttttaaa ttgtgaaatt
     3781 tctattcttt tattgtttga tttctacttc tataaatcct cttacgctat taattaacca
     3841 cacatagtcc gcttctaaaa ggtctttttt tgctagtgtt ttctcggaaa tcttattttt
     3901 agctaatagt tctgctctca ttgtccctga aagaagacct gaagttactg gtggcgtgaa
     3961 aaaacagcca tttataccta gaactatatt cccgttaata aattctgtca gttcaccccg
     4021 ttcattccaa agtagtgttt cctcggtttg agtatttttt aagttttcat agacctttcg
     4081 atgagtcgtt ttatgataga gaaataaatc attcgaaggg actggtttat cagcaagttg
     4141 cgctgttatt cgcttgtttt ttgtatcaat tcttgttagt tctagatcat gtgcgccatc
     4201 aggatgtaat aaaaagcgca ttttgtatgt gtcggtcgta tttttttgcg cagttttggt
     4261 ccatagtttc tctgtttctt ccctattaaa aggaataccg aaaaagtctg cgcttgtttg
     4321 tagtcgtttt aaatgatatt cggttcggaa aagctcacca ttttcaattc gcaaacattc
     4381 aattaaagaa aattttgtcg tcttttctaa aatagctgat tttgcgtgga tttcggaaaa
     4441 ttcgctagcg gcttccgaat cccagacgat accgccacca acaccataag ttgccttgtt
     4501 gtctgcgata gcaatagtac gaatcggtac attgaaaatc gcatttccgt taggttctaa
     4561 aaagccaatt gctccgcagt aaacaccacg aggagaatct tctagttctg aaataatttc
     4621 cattgttcgt gctttaggcg caccagttat tgagccacat gggaagagtg ctttaaaaac
     4681 agctgttaaa tcagtctcag gaggtgtttc tgctgtaacg gttgaagtca tttgccaaac
     4741 agttgggtaa ggttctagcg tcattaactt aggaaccttg acactcccgg gtacagcaat
     4801 catcccaagg tcgttccgta gtaaatcgac aatcatcaca ttttctgcac ggtttttagg
     4861 atcgtttttt agccaatcat gtgcttctaa gtccgcttgc tccgttattc cgcggcgaat
     4921 agtacctttc atcgggcgtg tcgttagaag attttccttc catttaaaaa agagctcggg
     4981 tgaagccgag ataatctcaa agtcactggt tgaaagtagg gcggtgtaat tcgcctttcc
     5041 aatctgctgt aacgtttcat aagtcgcttg agaagaaaag ctgtttggca catcactttg
     5101 aagtcgcacg gtgtagttta tttggtaagt atttccagct gcaatttcag ctttgatttg
     5161 ctctattttc tcggcgtatt cagggaaact agtattcatt ttaaaagaga gcggcgagga
     5221 atctggtgtt tcggtagctg tatcgttaaa attatcgtat acaccaaacc agacgagggg
     5281 catgtttccg ctcggttttt ttgtttttaa attacttcga aaagcaggcg cggcctcata
     5341 actgacaaaa ccggcgacgt attttcctga tttttgggct tcttcggctg ctttcattat
     5401 aggaagaact tctgctaaat catgcgtaac tagttcatac agtggatttt caaaaatttt
     5461 tgtgtcgcct tcaaaatcaa atcgtaataa gctcatttaa catttctccc taatcgtata
     5521 aagttttcaa gtattgcatg tccgttttca gataggattg cttctgggtg gaactggacg
     5581 ctgtgaatcg gttttgatac gtgagctagt cccattataa cgccgtcttc tgtcagtgcg
     5641 gttactttta aattagcggg aactgtggca ggatcaataa ctaaagaatg gtagcgcgtt
     5701 acttggaact ttggtgcaag ctctgcaaac aacccttccc cagtatgcga aatgatactt
     5761 gtttttccgt gaaccgggac ttttgccggc accacttttg ccccgaaaaa atgaccaatc
     5821 atttgatgac cgaggcaaat gccaagaata ggaacttgaa ttttacctag tagtgccaaa
     5881 cttacaggga agtcttccgg tgaacctggc cctggtgata gaactaccat ttcgggaacg
     5941 agttgttgaa atatttcaag cgaaaaatta gtagcagaaa caacctgtac ctcctcttga
     6001 agctctaaaa aatattggta taaattatat gtaaatgaat cattatggtc gatgattaaa
     6061 atcactttaa atccccctag ttaaaacggt tatactcttt tatagcaaat agctagagag
     6121 ataacaagcc cgaatgttta aagccgggag ccgagtggaa aggtacacta aataaccaaa
     6181 ggaaggtgtt tgagatgaaa aatgaactag aagataagat tcttgccatt ttggaacaac
     6241 atcaagtggg tgtattaaca tccgtacaag gagactatcc tcatgctaga tatatgacgt
     6301 ttctgcacga tggtttaacc ctttacacac cgtctggcaa agaattacca aagacagaag
     6361 aagtacgtag aaacccacat gtatccgttt taattggtta cgaaagccca gggtctgcgt
     6421 ttttagaaat taatggtttg gcttctcttg aagaagatga atcaatcaaa gaacgcattt
     6481 gggaaaacat ttctaaagaa tggttccaag gcgaagattc accgtccttt gtcgttataa
     6541 aaattgtacc tgaacaaatt agaatattga attctgatga tgacggtcca gacacgctcg
     6601 atttaatcgg ttaaagattt gcttgtaatt taagcagata tgcgatagaa taactttaaa
     6661 ttaatacgaa aagcgaagac aagaagtagt aatgaggcag aatttctaaa gagagccagt
     6721 gggtggtgtg aactggtgaa gtttccttat gaatccatct tggagtgagt ggtggaaagc
     6781 ataattttgc gagtaaatca ttccggttgg gtccgttaaa cctaaatgaa gctggggatt
     6841 ttttgaagtc ccaataaggg tggcaacgcg gttaactctc gtccctttcc tgttaattcg
     6901 ggaaagtacg ggagttttta tatggaaaaa ataaaggagg agttagcatg ttagatgtta
     6961 aattgttacg taataatttt gatgaagtaa agcagaaatt acaaaatcgc ggggaagacc
     7021 ttggtgaatt cgagaaattt ggtgagttag ataaacgtcg ccgtacgcta atcgtggaga
     7081 cagaagcgct gaaaagtcag cgtaatgaag tgtctcaaga aatcgctaaa ttaaaacgcg
     7141 aaaaacaaga cgcagatgct aaaattgaag agatgcgtgt cgttggtgat cgtattaaaa
     7201 cattagacat cgagctaaga gaaatcgacg agaagttaga tatgatttta atgtcgattc
     7261 caaatattcc gcatgagtct actccggttg gtgaatcgga agacgataac gtggaaattc
     7321 gcaagtgggg cgaagtacgc gaatttgatt ttgaaccaaa agctcactgg gacttaggaa
     7381 cagacttaga tattcttgat tttgaaaatg ctgcgaaagt aactggtagc cgttttgtct
     7441 tttataaaaa attaggtgca agactggaac gggcgctaat taactttatg atggacttgc
     7501 actcgaatga acatggctat gaagaaatgt taccaccgta catggtgaac cgtgcgagca
     7561 tgactggaac tggtcaattg ccgaaatttg aagaagatgc tttcttaatt gaagcagaag
     7621 attatttcct tattccaaca gcggaagtac cagtaacaaa ctaccaccgc gaagacattt
     7681 taaaagcaga agatttacca agaaaatata cagcatttag cgcatgtttc cgttctgaag
     7741 cgggatctgc tggtcgtgat acgcgcggct taattcgcca gcatcaattt aacaaagtgg
     7801 aattagttca atttgttaaa ccagaagatt cctacgcggc gcttgaaaaa ttaactggaa
     7861 acgcagaaga agtattgcgt cgcctagaat taccatatcg cgtattaagc atgtgtacgg
     7921 ctgatttagg cttcactgct gctaaaaaat atgatttaga agtttggatt ccaagctata
     7981 attcttaccg tgagatttct tcttgcagta attttgaaag cttccaagca agacgcgcta
     8041 acattcgttt ccgccgtgaa ccagggagca aaccggaata cgtgcataca ttaaatggtt
     8101 ccgggttagc actaggtcgt acagtcgctg ctattttgga aaactaccaa gatgcagatg
     8161 gttctgtacg cattccgaaa gtattgcaag gctacatggg cggtatcgag aaaatagaat
     8221 taccaaaata atatggaaga aggaactgta atggcgaacc ttagcgaatt accaaacatt
     8281 ggcaaagtac tggagcagga tttaatcaaa gcgggaataa aaactcccgt cgagctaaaa
     8341 gatgttggaa gcaaagaagc ctttttacgt atttgggaaa atgattcaag cgtttgtcta
     8401 agtgaactat atgcgcttga gggagccgtt caaggcatca ggtggcatgg tttagacgaa
     8461 gcaaagaaaa tcgaactcaa aaagtttcat caatccttat agaaaaagcg acgatgcata
     8521 ttcgcatcgt cgttttttta tttcccggga aatagttatt ttaattgttg ttctgcaaag
     8581 gaagcgtaaa gtggatggga agcaactaat tcactatgtg tgccacgacc agttatttcc
     8641 ccgtgttcaa taaagagaat ttggtcggca ttgacgatag tagaaaggcg atgagcgata
     8701 acaaaagtag ttcgaccttc cattaagttt gccaaagctt gttgaacgat ttgctcggat
     8761 tggctatcta aactagctgt agcctcatct aacataagga tattaggatt acgcaagaat
     8821 gctcgagcaa tggcaattcg ctgtctttga ccacctgaga gcttcacgcc acgttcgccg
     8881 acttcggtcg ccattttgtc aggaagttcg gaaataaagc cgtcagcata agctagtttt
     8941 gctacattcc atagctcatc ttccgtaatt tctcggtcca aaccataaca aagattatcg
     9001 cgaattgtac cagaaagcat cgcactttct tgggagacat aaccaatttg tgttcgccag
     9061 gaattgatcg aaatctcgga aaggggaata tcgcctacta aaatttctcc cgttttcggt
     9121 tgataaaaac gctctaaaat cgcaaataag gttgatttac ctccaccgct tggaccagcg
     9181 aatgcgataa cttctccggg ttttgtatca aaagaaacat gttttagaat aggctcacct
     9241 tcattatagg agaaggaaat atcagacgcg cgaatggttt ttccgctcac atctactttt
     9301 ttaccagcgt cgaaatcttc ttctgtttca ttcaaaatat ccgcaattcg ttctgttgcg
     9361 ccttttgctt tttgaagttg ggcgaagaat gttgcgaaag aagtgacagg aacgataatt
     9421 tggaacagat agagcaaaaa ggcgatgagg gtaccagtag tcatcgttcc agctgaaaca
     9481 cgaatcccac cgtaaccgat gatgccaacg ataaccccca tgacaacaaa gaaaattagc
     9541 ggtccaagca cagcaacaac tttcgcctca cgaataccaa agccaaatag gcgattaatt
     9601 ccttgatggc cagcctcggt ttctagtgtt tccgcattcg aagcctttac gagcctagct
     9661 tctgatagcg tttggctaat ggaaccagtg aagtcagccg tttcattttg aagaccttta
     9721 gatattttaa acattttctg accaagtggt gcaacaacta gcgcagtaat cggaacggcc
     9781 actaaaataa tgagtgtcat tttccagtcc atgaagaaca aaataataat cgccccgaca
     9841 acagaaatta tcccagttac aaattgcgga aaatggtcgg caatcagctc cttcactacc
     9901 actgtatcat ttaccatgcg acttaccatt tccccagtct ttgtattatc aaagtaagaa
     9961 accggtaaat gcacaatttt cttccataaa cgttcgcgaa tcgttgcaac gactttctga
    10021 cccatgtagt taagtaagaa aatcgagaag ccattcgtta tagcttgtaa aacaaatgcc
    10081 aacacaatta aagcaatcat ttttacatcg agtgaagcta ttgaaaagcc atcaattaag
    10141 ttctttgtaa aaagtggcac aacaaggccg gcaactgtag ttatcacact ggcaaataaa
    10201 gcgcagaaaa ttatccaatt cgcaggtttt gcgctaataa gtaattggaa aaattttcgc
    10261 caactatatt ttttctgatc cattcatttc acccttcctg agttacccat ccataaatta
    10321 cttacttttt aagtataatc aatttatcta aaaataaacc agtctaaagt ggtagttatt
    10381 gaattattat ctgactttaa atatttaata aaagtaacaa aaagttcgaa tttaggataa
    10441 aacactaacg aaaaacgaga tat
//
LOCUS       DASDXX010000093        10461 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.093, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000093 DASDXX010000000
VERSION     DASDXX010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10461
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.093"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..884
                     /locus_tag="U0280_001770"
     CDS             <1..884
                     /locus_tag="U0280_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2271699.1"
                     /translation="QLYYFKKLAEKEHYTIAAAELSITQPSLSHSIAELERELGVYLF
                     EKQGRNIRLTKYGRFYLTYVEKSLAELEKGEKLLHELTSPSHGNIDLGFIYTMGAHTV
                     PELVQNFTKVESHKDITFSFFQGATKSIIPDLKNEKFDLAICSYVENEPDIEFLPLTK
                     QELVVVVAENHPLAKHDSIDLKDTADYSYIFFSDTSGLRPLIDSLFAEINIQPKIGCY
                     VEEDTAMVGLVSVDYGISIMPKISSLAHYNVKVLSINEPKHDRFIYLASLKNHYISPA
                     SKAFKDFALRYGKKHFL"
     gene            complement(921..1649)
                     /locus_tag="U0280_001771"
     CDS             complement(921..1649)
                     /locus_tag="U0280_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2271700.1"
                     /translation="MTEEFVNKEDALKNYNAKEFRTPDGYTSDMILTTVKELNGKPTL
                     HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESADQAAARELEEETSLTGIPLIPF
                     GVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAADIGLFSMTEALELPLAFDHL
                     DMLKKAYSAITEEFLLTTAIRDFLPETFSAELLYQTLDGCTKPGILPDEVEFMENIEY
                     LPYLEKVGELYRFNADAEAGSIYF"
     gene            complement(1741..1911)
                     /gene="rpmF"
                     /locus_tag="U0280_001772"
     CDS             complement(1741..1911)
                     /gene="rpmF"
                     /locus_tag="U0280_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM2271701.1"
                     /translation="MAVPARRTSKAKKNKRRTHKGLTTPGLSRDSETGEYRMSHRISP
                     DGTYKGRTILEK"
     gene            complement(1976..2551)
                     /locus_tag="U0280_001773"
     CDS             complement(1976..2551)
                     /locus_tag="U0280_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM2271702.1"
                     /translation="MIEKTIKERRSIKKANDAPISRETVNTILEQAAYAPFHSKVEPW
                     NVYVLHTLAEKERYIEKIIEFNEREQGVSFSEAEIADLKAGYAKKIITPPYLLIVTTN
                     IIGHGKKDFESIGATSAFIQNIQLLGWEAGIGMIWRSNRFIFDAKFAEDLGIPSEQKI
                     VGTLHLTSLAEVPEAKPRRPLNEWVKNLADL"
     gene            complement(2785..3162)
                     /locus_tag="U0280_001774"
     CDS             complement(2785..3162)
                     /locus_tag="U0280_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271703.1"
                     /translation="MKNTVHDSEILSYHADFENSQLIMFVKDEENRKYKVIFEGLLTF
                     CFEHQMSNSIILDIVKGEVSSFISEKSILLSEGKNYFWPLDYESEDELLNYLNEKKLN
                     YYELQASYGLNGWILCSHYHIEL"
     gene            complement(3175..4476)
                     /locus_tag="U0280_001775"
     CDS             complement(3175..4476)
                     /locus_tag="U0280_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
                     /protein_id="HEM2271704.1"
                     /translation="MSRIDIGEIQDFAFQLRAANQTGRKIIQGVKTTVTNYVEDGSLK
                     GKAVEASKNYFQMTYIPLCDTIIEAMNESEERLKRYIQDFHDQVDLSPNAKIDADGLY
                     ELGQMIDRIESKKEALYQRMNSSTEGQMQTYRSQLATAYKQENILEKYLAFEQSHGAF
                     FDHLTDLVQGIQQTVRELQSNIQFDSQTGSYDLSKLNFATVNRMRKTLGKASATDTTV
                     YNFASYSKVKQGVMWILSKDGKVDIKATEAYNTASFNGELPKESKQATEEGELLKATL
                     ESLKQNKDPITGQEISKAQSFGILTSLVFGYTTKGYQGKKLTISKNTLIKLRQADKTV
                     IERIKKTSRIDYEEIVKKGSKMPKHIIVENKQSLPGKAMPSSSADLLNPDGSVKQRRY
                     YDEKGRAKEDIDFNHSDDGTHEFPHRHEWDWDRKPPRKPSK"
     gene            complement(4473..4841)
                     /locus_tag="U0280_001776"
     CDS             complement(4473..4841)
                     /locus_tag="U0280_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair Rad50 ATPase"
                     /protein_id="HEM2271705.1"
                     /translation="MDSNNEKLKQQLQTLQKQQKDAELSLYMLKHEQNERIWLEEDFE
                     RICYEERESLELMREVWQGDQARNFGYYLEDLQADEKNKWCQTFQAEEEKRQEKINTY
                     QKNIYQLESKQQDIQKELFQ"
     gene            complement(4969..5334)
                     /gene="isdG"
                     /locus_tag="U0280_001777"
     CDS             complement(4969..5334)
                     /gene="isdG"
                     /locus_tag="U0280_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme oxygenase IsdG"
                     /protein_id="HEM2271706.1"
                     /translation="MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGF
                     ELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVG
                     NAIARFEVVHVQNPVIVEK"
     gene            complement(5492..5971)
                     /locus_tag="U0280_001778"
     CDS             complement(5492..5971)
                     /locus_tag="U0280_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2271707.1"
                     /translation="MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDA
                     ERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSV
                     GPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE"
     gene            complement(6061..7164)
                     /gene="rlmN"
                     /locus_tag="U0280_001779"
     CDS             complement(6061..7164)
                     /gene="rlmN"
                     /locus_tag="U0280_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEM2271708.1"
                     /translation="MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFE
                     EMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGL
                     SVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVV
                     MGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI
                     SLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEAL
                     ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHG
                     TDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE"
     gene            complement(7315..9015)
                     /locus_tag="U0280_001780"
     CDS             complement(7315..9015)
                     /locus_tag="U0280_001780"
                     /EC_number="4.2.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oleate hydratase"
                     /protein_id="HEM2271709.1"
                     /translation="MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKAR
                     YYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFV
                     CRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNI
                     LDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWFMWQTTFAFQKW
                     SSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTV
                     EDIDFKDAPGITATALHLSDGSTIKLGPDDDVIMTNACMTDSATLGDMNTPAPKPEEK
                     PISGELWYKVAQKKPNLGNPEPFFAHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGS
                     GALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEE
                     ILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAM
                     ISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
                     "
     gene            complement(9125..9685)
                     /locus_tag="U0280_001781"
     CDS             complement(9125..9685)
                     /locus_tag="U0280_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2271710.1"
                     /translation="MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFY
                     YHFTDKYDLLTWTYENDFFHCLADGITLENWDKHVLKMLESIKENADLYKNTVSADAS
                     ILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEA
                     PEMIANQLFRLAKDTEFLANSMYREN"
     gene            complement(9937..10296)
                     /locus_tag="U0280_001782"
     CDS             complement(9937..10296)
                     /locus_tag="U0280_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3139 domain-containing protein"
                     /protein_id="HEM2271711.1"
                     /translation="MKKYKKWWITIGIVLILCVIGYVYWFVIPKHTANKAVDNYLAEQ
                     KIKSNQIETRVIKKDWKMGGYLTKIVFKDDPNLKYEYSYDERYEFPHHIYVLVFKDGS
                     SQEDDQVKHPPLQEQND"
BASE COUNT         2795 a         2281 c         1774 g         3611 t
ORIGIN      
        1 gtcaattata ctattttaaa aaactagctg aaaaagagca ttacacgatc gcagccgccg
       61 aactctccat tacccagcct agcttaagcc attctatcgc agaacttgag cgagaacttg
      121 gtgtctattt atttgaaaaa caaggccgca atattcgttt aactaaatac ggtcgctttt
      181 atttaactta tgtggaaaaa tccctcgccg aactagaaaa aggtgaaaaa cttttacacg
      241 aattaacgag cccatcgcac ggaaatattg atttagggtt tatttacacc atgggcgccc
      301 atacggttcc agagctcgtc cagaatttca ccaaagtcga aagccataaa gacatcacat
      361 tttccttttt ccaaggtgcc actaaatcaa ttatccctga tttaaaaaat gaaaaattcg
      421 acctagcgat ttgctcctac gtcgaaaatg aacctgatat tgagttttta ccattaacaa
      481 aacaagagtt agttgttgtc gttgccgaaa accacccact tgccaaacat gattcgattg
      541 atttaaaaga caccgcagat tattcgtata ttttcttttc tgacaccagt gggctgagac
      601 cgcttattga ttctcttttt gcggaaataa atattcaacc taaaatcggc tgttatgtag
      661 aggaggatac cgcaatggtt gggcttgtga gtgttgatta cggtatttct atcatgccaa
      721 aaatctcctc attagcacac tacaatgtca aagtattatc catcaacgaa ccaaaacacg
      781 atcgttttat ctatctagca agtttgaaaa accactacat ttcgcctgct tccaaggctt
      841 ttaaagattt cgcattacgt tatggtaaaa agcatttcct ataaaaaaag gagccaacca
      901 aatcggtggc tccttttcta ttaaaaataa atacttcctg cttcagcatc cgcattaaat
      961 cggtataact caccaacttt ttctaaataa ggtaaatact cgatattctc cataaattct
     1021 acttcatccg gcaaaatacc tggcttcgtg caaccatcta acgtttggta aagtagttcg
     1081 gctgagaaag tttctggcaa gaaatcacga attgctgttg tcagtaaaaa ctcttccgta
     1141 atcgcactat acgctttttt aagcatatct aaatggtcaa aagcaagtgg cagttccaaa
     1201 gcttctgtca ttgagaatag gccgatatcc gccgcgtcat ccccagccgc gcgtttctct
     1261 aaagcttctg gtggcacaat cgcataaaat gcccgcgaaa taatccaacc gcgcggatca
     1321 cgacccggtt tatcaaatac cccaaacgga atcaacggaa taccagtcaa acttgtttct
     1381 tcttctagtt cacgcgcggc agcttggtcc gcagattcat tttcatcgac aaatccgccc
     1441 ggaaccgccc attttccgcc ttccatattt ggttttcctt ctgcgtttgt aaggcttcgt
     1501 ttaattaata aaatatgtaa tgttggtttc ccgttcaact cttttactgt agttaaaatc
     1561 atatcgctcg tatagccatc tggtgtacga aactcttttg cattataatt tttcagcgca
     1621 tcttctttgt tcacaaattc ttctgtcatg tcaaaatcag actccttttt gtgtatttag
     1681 ctctttccat tatagtatca caaaaaaaag aatttgttcc aatcactgga acaaatcctc
     1741 ttatttttcg agaattgtgc gacctttata agtgccgtct ggtgagatgc ggtgtgacat
     1801 acggtattcg cctgtttcac tatcgcgact caaacctggt gttgttaagc ctttatgcgt
     1861 acggcgcttg tttttcttcg ctttggacgt acgtctagct ggaactgcca tattgctcgc
     1921 ctccttattt cttacacttg tatcattgta acgctaatca cacgaaacat caatcttaca
     1981 aatcggctaa attcttcacc cattcattca aaggacgacg cggttttgct tctggcactt
     2041 ccgctaagct agttaaatgc aaggttccaa caattttttg ctcagaaggg atacctaaat
     2101 cttccgcaaa cttcgcatca aaaataaatc tattcgaccg ccaaatcatc ccaattcccg
     2161 cttcccagcc aagtaattgg atattttgga taaatgcact agttgccccg attgattcga
     2221 aatccttttt cccgtgaccg ataatattcg tcgtcacaat gagtaagtat ggcggcgtaa
     2281 taattttctt cgcatagcct gcttttaaat ccgcaatctc tgcttcagaa aaactaaccc
     2341 cttgttcgcg ctcattaaat tcgatgattt tctcgatgta tcgctctttt tcagcaagtg
     2401 tatgcagcac gtatacattc cacggctcta ctttgctatg aaaaggcgca taggcagctt
     2461 gctctaaaat ggtgttcacc gtttctcttg aaattggcgc gtcgttcgct ttcttaatgc
     2521 tacgacgttc cttaattgtt ttttcaatca tgtttaattc ccccttaaat gataaacgtt
     2581 atcatttaga gaattatagc atgattggtt tgtgggttgc tagtaaaggg gcttttgggg
     2641 tttagcatat gtgtttattt tgttcagatg attctctata gaccaaaacc tgttttctaa
     2701 ttctatggct gattcataat atgttttttc aaataaaacc atttatttcc cgctttctat
     2761 ctcaccatat ttcttagaaa ataactataa ttcaatatga tagtgagaac ataatatcca
     2821 accgtttaac ccatatgaag cttgtaactc ataataattt aattttttct cgtttaaata
     2881 atttagtagt tcgtcctcac tttcataatc tagtggccaa aaatagtttt tgccttcaga
     2941 aagtaaaatt gacttctcac ttataaagct gctaacctct ccttttacta tgtctaaaat
     3001 gatactatta gacatttggt gttcaaagca gaaagttaaa agcccctcaa atatgacttt
     3061 atattttctg ttttcttcat ccttaacaaa catgattaat tgagaattct caaaatctgc
     3121 atgataagac aatatttcgc tatcatgaac tgtatttttc ataattaaca ctccttattt
     3181 agatggcttt cttggcggtt ttctatccca atcccactca tgtctatgtg gaaattcgtg
     3241 agttccgtcg tctgaatggt taaaatctat atcttcttta gctctgccct tttcatcata
     3301 atatcttctt tgttttacac ttccatcagg atttaacaaa tcagccgagg aactgggcat
     3361 agcttttccc ggaagacttt gtttgttttc cacgatgatg tgtttaggca ttttactacc
     3421 ttttttaaca atttcttcat agtcaattct gctagttttc ttaatccttt ctataaccgt
     3481 tttatcagct tgtctcaatt ttatcaatgt atttttcgat attgtcagtt tcttcccttg
     3541 ataccctttc gtcgtgtagc caaaaacaag tgaggttaaa atcccaaaac tttgagcttt
     3601 gcttatttct tgaccagtta tcggatcttt attttgcttc agtgattcta gtgtggcttt
     3661 taacaactcg ccttcttcag tggcttgctt actttctttt ggtagctcac cgttaaaact
     3721 ggctgtatta taagcctccg ttgctttaat atccactttc ccatcttttg aaagaatcca
     3781 cataacgcct tgttttactt tgctataact cgcaaaatta tagactgtcg tatcagtggc
     3841 actcgctttt cctagcgttt ttcgcattcg gttcacagtg gcaaaattta atttacttaa
     3901 atcatagctg cccgtttgac tatcaaactg gatatttgat tgtaactctc gaacagtttg
     3961 ctggatacct tgcactaaat ccgtcaaatg gtcgaaaaaa gccccatgac tttgttcaaa
     4021 agccagatat ttctctaaaa tattttcttg cttatatgcg gttgctaact gggaacgata
     4081 ggtttgcatt tggccttctg tactgctgtt cattcgttgg tacagtgctt cttttttgct
     4141 ttcaatgcgg tcaatcattt ggccgagttc atataaacca tctgcatcaa ttttagcatt
     4201 aggagaaagg tctacttggt cgtgaaagtc ttggatatac cgcttcaacc tttcctcact
     4261 ctcattcatt gcctcgatta tcgtgtcgca gagtggaatg tatgtcattt gaaagtaatt
     4321 tttggacgct tccacggcct tcccttttaa actaccatct tctacgtagt ttgtcacggt
     4381 ggttttgacg ccttggatga tttttcttcc tgtttggttg gctgcgcgta gttggaatgc
     4441 aaaatcttgt atttctccga tgtcgattcg gctcactgga acaactcctt ttgtatatct
     4501 tgttgtttac tttccaattg gtagatgttt ttttggtatg tatttatttt ttcttggcgt
     4561 ttttcttcct cagcttgaaa ggtttggcac catttatttt tctcgtctgc ttggaggtct
     4621 tctaaatagt agccgaaatt gcgagcttga tcgccttgcc agacttctct catcaactcc
     4681 aaagactcgc gttcttcgta acaaatccgc tcaaaatctt cttctagcca aattcgctca
     4741 ttttgttcat gtttgagcat atataaggat aattccgcat ctttttgttg tttttggaga
     4801 gtttgtagtt gttgtttcaa tttctcgttg tttgaatcca cttaaatcca tccctgcttt
     4861 tttattctta atataccgca taagatataa aaattcaata attatctgaa aattcgagcg
     4921 cgcaaaaaaa caagccatct acctcgaaac ggcttgttca ttcacttctt atttttcaac
     4981 aatcacaggg ttttgcacgt gaaccacttc aaaacgagcg attgcatttc ctacgatgcc
     5041 tttgcggtct tctctttgtt ctctagtgtc ttttgttctg ccgtgtgctt ttttgaagga
     5101 atcgcttttc acccaattgc gttgggcttc ttcactttcc catttgcttg ttacgactac
     5161 ttcttcatag tctttgtctt ctggtttgct gtgccatagt tcgaagccta ggaaaccttc
     5221 tacttctgcg atatcttttg ttggatgtcc gtcgccattt gcgcctgtga actgacggat
     5281 aacgtgctct gctgcgcctt tttctacctt aatcgtatta gttacaataa tcattcttaa
     5341 atcccccttg gataattgta ttgtatgtat aataggctgg ttccttccat tatattgata
     5401 atgattctca atgtcaattt tagggaatgg gcttggagtg ggatttaaaa agaacaaatt
     5461 tcacaatcaa tgaaatttgt tctttagttt gctattcttt ttcaaccacc ggaatccaaa
     5521 cctccgaata ataatcagcg gcagttgtgt caccttctgt gtagacttct agttctggag
     5581 cgtttccgtg cgcgtagttg cttgtttgga accattcgcc gtaaatgtat tcccacactt
     5641 tttggattgc gcttggtagt gggccgactg atttgaagat ggcccattta cttgctggga
     5701 tgattagttt ttccatgtct gctggtggag tgagttcgga ttcaatcgcg atataatagt
     5761 ccattttgtc gccgttcatt ttacaaacgc ctaaaatacc atcaattgtt gcaaattcag
     5821 ctaactcgtt gattcgttcg gcatcaccat ttgtgtttgc ttcttgccaa aattggctga
     5881 ttttttcttt ttgcgcatcg ttttcaaccg aaaaagttcg ttttttcccc acagctgtaa
     5941 aagcatttcg ttcgacaatt tctacttcca tgatttttgt cctccttcaa ttgctttcgg
     6001 tactttaagt ataaacaaaa actatccaat ctccaaatgg aaaccagata gtttgaatta
     6061 ttattcttcc gctgctgctt gtttttgttt catccgttcg cgcacgccaa ctcgtttgat
     6121 ttgtttacta cgaagttgcc cacacgcggc atcaatatcc gtcccgtgtt cgcggcgaat
     6181 aacacaatta ataccatttt tcttcaatgt atcatagaaa gcgagtacgt cttcttttgt
     6241 gctacgttca taatcgatat gctcatccac cgggttgtaa ggaatcaagt taacataagc
     6301 taaatggcga tgttctccga gaagtgccgc cagttcgagc gcttcttttt tgtggtcgtt
     6361 tacacctttt agcataatgt attcaaacgt gattcggcgg ttagttttgt taacgtaata
     6421 atggattgct tccatcaatt tctcaattga ataggtcttg ttaatacgca taatactcgt
     6481 ccgcagttca ttgttcggcg catggaggga aatcgctaag ttaacttgga aatcctcatt
     6541 ggcaaaatca ataatgcgcg gtgcaagacc acttgtcgaa acagtgatat ggcgcgcgcc
     6601 gattgcgagg cctttgtcat gattaatcac acgcaagaaa tccatcacat tatcgtaatt
     6661 atcaaacggt tccccgattc ccattacaac cacgtgactc acgcgttctt ccaaattacg
     6721 tccatccaaa taatgctgca cattcataat ttgttccaca atttcgccag cggttaagtc
     6781 gcgacttttt ttcaaaagcc cactcgcaca aaaagtacag ccgatattac aaccaacttg
     6841 agtcgttaca caaaccgaca agccatattc ttgcttcatc atcacggttt caattaagtt
     6901 cccgtcactc agcttaaata aatatttcgt tgtgccgtct gtcgattctt gtaccacttg
     6961 ttcttctaaa gtgttcatca caaaattcgc tgttaaaagt tcaattgttt cttttggaac
     7021 gttactcatt tcttcaaaag ttttgacacg ttttctataa agccagtccc acacttgtgt
     7081 tgcgcggaat ttcttttgac cgtgtgcttc tagccattct gttaattttg tccatgttaa
     7141 tccataaatg gagctttttt ccattgttca gcctcttttc aggtcttgtt ttcgtctata
     7201 aagattatag ctgttttatg gttcacaagc aatgctattt cgtaaatatc agccgtttgt
     7261 cctgtctcgc acaaaaaaag tagctattct gtcacaaata gctactttct cactttatct
     7321 aaacatggtt tgggttgctt tcgctagcac ttttggatca cgattatgtg gtgttactgg
     7381 gcagattttt ttgtcaatat caagtaacgt atacacggcg attctagcag cacgaacgga
     7441 atattcttcg gtgaaaacca tatcttttgg aatttccaca aattggctaa tcatcgcaaa
     7501 gtttgtacta ccttctggaa caacggccgg acgatcactc attgcccgtg gttcaaattg
     7561 cgcatcgatg tatggcatgt agcacggaat tacattgata atatccgctt taatttcttc
     7621 aaaatcgtct tgccagttca aatgacacat taattcatat aaaatttctt ccccggtaca
     7681 ttctttcatc ggttttttca cgaaatcacc cacgcggtct ggatataatc cgtaacccca
     7741 gaaaatcgta gtgtttgcat cttgcgcttt aaaatgaggt tgtgcggcaa caacagtact
     7801 cattaaccaa ttagagtctt tgaaagtcat gagcgcacca cttcctggaa tgttccctgt
     7861 gaagcgttca atgcgtttta ataatttatc accatgacaa gtgacggtaa aactttgcca
     7921 gtttgtttct tcttcatgag cgaagaatgg ctctggattg cctaaatttg gtttcttttg
     7981 agcgactttg taccaaagct caccagaaat tggtttttct tcaggttttg gtgccggtgt
     8041 attcatatca ccaagagtcg cgctatctgt catacaagca ttcgtcataa tcacatcatc
     8101 atctgggcca agtttgatag tggatccatc cgataaatga agtgctgtcg ctgtaattcc
     8161 aggcgcatct ttgaaatcaa tatcttccac cgtttgatta attgtaaaat caacatggtg
     8221 tttatctaaa aatgttttta aaggtaaaat caagctttcg tattggttta gaggggttct
     8281 tgttacacct tccagcgtat caatccgact aaattctaac atcatccgat tcatataacg
     8341 tctaaattca aacaagctgc tccatttttg gaaagcaaaa gtggtttgcc acataaacca
     8401 aaaattcgtt tcaaaaaagt gttcgtcaaa ccaatcacgt atcgttaaat tatccagttt
     8461 ttcttccgga gtagcgagca gtttcgtcat caacatccgg tcattattat taaatcccat
     8521 cgaatgcgca tcgaggatat tgcgatcttt atcaactaat ctcgcttgcg catgggttgg
     8581 atgtaaatgg tcaaaattca aaatctcttc tgtaacacta aagttcggca tatcaagaga
     8641 cggaatacta ctaaataaat cccagaaatt ttcataagtt tcttcattca acatccgacc
     8701 accgcgacaa acaaagccat gttccacgct tccggctcca tcattacttc cgcctaaaat
     8761 atgcatacct tcaataatat gaatattttt cccatcaaaa ttggcatccc gaattaaata
     8821 aacagcgccc gccaaactag caatcccgcc accgacgaaa tacacttgtt tgtcaccata
     8881 atagcgcgcc ttaattgctt catccactgc ccgttctttt tcagcggcct tctgttcaga
     8941 aattttcttt gcggcaatac ctgttccaat tgcagcccca gttagagcga ctagcgtacg
     9001 ttttttattt ttcatcacta tctcctccaa tttcttgata cagatagtat accgcttgtc
     9061 gttcgctttt aatctgggca aaagaacgct tatgtctggt ttttagacaa attagccata
     9121 ttgtctagtt ttcgcggtac atgctgtttg ctaaaaattc cgtatccttt gcaagtcgaa
     9181 atagctggtt cgcaatcatt tccggtgcct ctttgaaacc gcgcgtaatc catttaatca
     9241 gtactcccga gcagccgtaa gaaaagaatt ccgcataaaa tactcggtct gcctcgttca
     9301 cggctccatt cgtatcaatt ttctcaaata aatccataaa cagcgaattc gttaatttag
     9361 aaaagcaaaa agaaaggata ctcgcatccg ccgaaaccgt gtttttatat aaatcagcat
     9421 tttctttaat cgattccagc attttcagta catgcttatc ccaattttca agcgtaatcc
     9481 catccgccaa acaatggaaa aagtcatttt catacgtcca agtaagcaaa tcgtatttat
     9541 ctgtaaaatg atagtaaaaa gtttgccgat taagtccaca aatattcgta atatccgcaa
     9601 tactaatctt ttcaaaccgc ttgtgctgac aaagctccat cagcccacca gcaatcgctt
     9661 ttttagtaat gagtgattcc gccatggcat ccgccccgtt tcgtttgttt gggttaattg
     9721 tatctcaggt ggggttggaa ttgctaggga aagcatggga gatgttggtg ctttattatc
     9781 tccttgaatg aaaatgacag attttagttg aactaatcca aagttttttg tcttctcgac
     9841 tagctctcgt gcattaaggt gtctcaagtt atttagtaaa ttcactttgg gaccttagcc
     9901 ggcttgatca ttcgattggc gtgatgcttt tttgttttaa tcattttgct cttgtagtgg
     9961 tggatgcttc acttgatcgt cctcttgact cgagccatct ttaaaaacaa ggacataaat
    10021 atgatgcgga aactcgtatc tttcatcata gctatattca tactttagat ttggatcatc
    10081 tttaaaaact atctttgtaa gataaccacc cattttccaa tctttcttta tcactctagt
    10141 ttcaatttga ttagatttga ttttttgttc tgctaggtag ttatccactg ctttattcgc
    10201 cgtatgttta gggattacaa accaataaac atatccgata acgcaaagaa ttaacactat
    10261 accaatcgtt atccaccatt ttttatactt tttcatttag ctacacttcc taaggcatga
    10321 gatttattta aagtatttca cttgttgcct ttttgaaaaa tagtttggta aatcatacag
    10381 gaaaactaat gaagaaaata catgtactac aggcttactt cctttaccac aatagttgtt
    10441 cctactaaaa ccatagcata g
//
LOCUS       DASDXX010000094        10397 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.094, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000094 DASDXX010000000
VERSION     DASDXX010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10397
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.094"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            133..2139
                     /locus_tag="U0280_001783"
     CDS             133..2139
                     /locus_tag="U0280_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2271712.1"
                     /translation="MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAISAQITQINHL
                     LKSEPILIDHDMIFVTDVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYM
                     SLGALADYVYVSKNTMLTDVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAEL
                     IREVVQTPYGKFVLDEKKLITVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGI
                     IKRSKVTNKKWTFKIEMYDIKNTREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVE
                     SALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHVRPAIYRTILGFQIN
                     NPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEETEQP
                     IFRAVVLCKSGTSISKLLLENLKMMFPNIDFQGAYAVRQLSTVARDIDFIFTTVPVQS
                     DATIFVIPSILSKDSRQILREQVDKAIEMDSHKKTKELLAMLKDEIPEENIRLVQAKM
                     ESFFNKKEQPMEKKEPEQMQITEEQVHFLETPLEWEQLVSVAFAPMLERGTVDASYIH
                     TCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQDIQLMIMKADTKTPENEAVKIMIAL
                     APSEQNKHIPLLLKLNEIFLKPEKLAGILASTNKKKIVEILERG"
     gene            2147..2614
                     /locus_tag="U0280_001784"
     CDS             2147..2614
                     /locus_tag="U0280_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2271713.1"
                     /translation="MDYHDLFQKELTLINSRYENQAELFEYTSKILEKEQYVEPTFRE
                     AVTSREVVFPTGLEMNGIKIAIPHTDTIYVKRPFVLVNKLSTPIPFIQMGTTDKWIDV
                     EVIFMLGIKNPQDQVPLLSSIMEKFMEADFVEQIKTINDSNTLCDFLKKQFGE"
     gene            2620..2895
                     /locus_tag="U0280_001785"
     CDS             2620..2895
                     /locus_tag="U0280_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271714.1"
                     /translation="MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLE
                     QHIKTSDVYVAITKANKEFDIPTLNGIAFLTGMGMDEETEKLLNALK"
     gene            2923..4272
                     /locus_tag="U0280_001786"
     CDS             2923..4272
                     /locus_tag="U0280_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HEM2271715.1"
                     /translation="MESLQSVIQFILNLGAAVFVPALMIIIGLIVRMKVRDAVSAGII
                     LGVAFLGMNIVIGFMIEALTPAAQGLAERTGINLSILDGGWTSMATLAWAWPFAFLMF
                     PLQLGINAIMLVINKTKTLNVDLWNVWGKILTAVLIIGVTQNVYLAFIVAGIQIVTEL
                     ILCDANQRQIQELNGIPGVTVSHGMMIFCIFLMPLDWLLKKIPALRKDMDANALKDKI
                     GIFAENHVMGFIIGGLLGIAAGYDVAKTLMLAMQAAAALTLFPMVAKLFMQALSPLSD
                     GISEFMKRKFKNRELFIGLDWPILAGCSEVWVAIVLMVPVTLIFALILPGNGVLPFAG
                     ILNISLCAPALIVTGGNLIRMIILGTITTPIFLYVSTFFAGTITDLAHSTGAISLKAG
                     QQITWSTLEYPVFRYIFAEASQFTILGFIFVAIWVVLLVFYVKMMKKRTIELEKASS"
     gene            4290..5222
                     /locus_tag="U0280_001787"
     CDS             4290..5222
                     /locus_tag="U0280_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase family hexose kinase"
                     /protein_id="HEM2271716.1"
                     /translation="MIYTITLNPAIDRLLFIQGELEKRKTNRVKKTEFDCGGKGLHVS
                     GVLSKFGIKNEALGIAGSDNLDKLYAILKEKHINHDFLVEAGTSTRECFVVLSDDTNG
                     STMIPEAGFTVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKELLRTVKAT
                     GAFLGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDETTNSLEENVRKLAGKIPYLVV
                     SLGAKGSLCAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATG
                     CSASKVMQQDSSSFDLEAAGKLKNQVSIIQLEER"
     gene            5224..5874
                     /locus_tag="U0280_001788"
     CDS             5224..5874
                     /locus_tag="U0280_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEM2271717.1"
                     /translation="MLYQKEREDLAKIVKTMFDRFETNAAGGNVSVRMNSEHIIMTPT
                     LMSQAKLCDLSPYEILVVDNNNEVVEGDGRVTREINLHRACYVENPKIGCVLHAHPKE
                     SMLFATLGMELPNLTEATQKIGQIPTLEFAPATSPELAEIVRKHVIELGDKAVPSASL
                     LNKHGIVVLDTSLHKAYDMLERIEYNAYIAEKALVFDALGIKKLAHDRELNYNLEE"
     gene            5878..6075
                     /locus_tag="U0280_001789"
     CDS             5878..6075
                     /locus_tag="U0280_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271718.1"
                     /translation="MEKFLFNATLFASALLLMVGIFKSSIPITAISLVLAVVSQHFFR
                     KKYPKQTRSYREIVAAKQKKG"
     gene            complement(6119..7642)
                     /gene="betL"
                     /locus_tag="U0280_001790"
     CDS             complement(6119..7642)
                     /gene="betL"
                     /locus_tag="U0280_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family glycine betaine transporter BetL"
                     /protein_id="HEM2271719.1"
                     /translation="MKKLTSVFWGSGCLVLLAVLFGAFLPKQFEAFTTNIQKFLTSNF
                     GWYYLIVVAIIIIFCLFLVLSPIGSIRLGKPGEEPGYSNKSWFAMLFSAGMGIGLVFW
                     GAAEPLSHYAVQAPGGEVGTQAAMKDALRYSFFHWGISAWSIYAIVALALAYFKFRKN
                     APGLISATLYPILGKHAKGPIGQLIDIIAVFATVIGVATTLGLGAQQINGGLTYLFGV
                     PNNFTVQFTIIIIVTILFMLSAMSGLDKGIQLLSNVNIYVAGVLLVLTLILGPTLFIM
                     NNFTNSFGDYLQNIIQMSFQTAPDAPDARKWIDSWTIFYWAWWLSWSPFVGIFIARIS
                     RGRTIRQFLLGVIVLPALVSVFWFAVFGGSAIFVEQHGNSGLSSLATEQVLFGVFNEF
                     PAGMVLSIVAMILIAVFFITSADSATFVLGMQTTGGSLNPPNSVKVTWGLLQAGIASV
                     LLYAGGLTALQNASIIAAFPFSIVIILMIVSLFVSLTREQEKLGLYVRPKKSQRSQL"
     gene            complement(7810..9180)
                     /gene="argH"
                     /locus_tag="U0280_001791"
     CDS             complement(7810..9180)
                     /gene="argH"
                     /locus_tag="U0280_001791"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEM2271720.1"
                     /translation="MEKLWGGRFQGKSEAWIDDFGASISFDQKMAKEDLAGSLAHVAM
                     LSKCGIIPASEAAEITAGLKILQEKLALGELEFSTVNEDIHLNIEKLLHEEIGPVAGK
                     LHTARSRNDQVATDMHLYLKQAVAEIIQSLKHLRVVLVQKAEANVETIMPGYTHLQHA
                     QPISFAHHLLAYFGMFTRDLERLEESVKRIDISPLGSAALAGTTFPIDRAYSAELLGF
                     SAIYENSLDGVSDRDFIIEFLSNSSILMMHLSRFCEELILWTSHEFQFVELTDAFSTG
                     SSIMPQKKNPDMAELIRGKTGRVYGNLFGMLTVLKGLPLAYNKDLQEDKEGMFDTLET
                     VQTSLDIFAGMIETMKINTEIMEESTQKDFSNATELADYLAKKGVPFREAHEIVGKLV
                     LECTQNGIYLQDVALSHYQEINPLIDDDIYVVLSSKTAVQKRNSYGGTGFDQIKVALE
                     NAKKTL"
     gene            complement(9184..>10397)
                     /locus_tag="U0280_001792"
     CDS             complement(9184..>10397)
                     /locus_tag="U0280_001792"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEM2271721.1"
                     /translation="AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDF
                     IKEKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVE
                     VARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVRDWKWSREEEINYAKEH
                     NIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTVSLEDAPDTPDIVEI
                     TFDAGIPISLNGENMSLANLILTLNEIAGKHGVGRIDHIENRLVGIKSREVYECPAAV
                     TLITAHKELEDLTFVREVAHFKPIIEQKISETIYNGLWFSPLTEALVAFLKSTQKFVN
                     GTIRVKLFKGHAIVEGRKSPNSLYDENLATYTSSDTFDQDAAVGFIKLWGLPTKVSAE
                     VNSKVTITTEV"
BASE COUNT         3394 a         1959 c         2032 g         3012 t
ORIGIN      
        1 atctataata gaaagtaacc cgcgatttta actcatcaca ataaatcttt ctgccaaaag
       61 cgaagttgtg atgaatcacc atttttatgt aagggttatc atttactatt aatataaggg
      121 aggggaaagt agatggaaca gaattgtaag gaattaatta cttatctgct cttgaatcga
      181 caagtgaatc ttagaaatgt ttccaagaat tttaaagtat ccaaagaagc aattagcgca
      241 cagattacac aaataaacca tctactaaag tcagaaccaa ttttgattga tcatgatatg
      301 atttttgtta cagatgtatg tagggaagct tgttaccggc ttttaactgc ggaagagcaa
      361 cagctgtttt cgttttatga ggtaaatatt cgtcgcaaac ttatcatgat taaattacta
      421 cttcataatc attatatgtc actcggagcg cttgcggact acgtttatgt aagtaaaaac
      481 accatgctta cagatgttaa aagtatcaaa gagagtctgc atgagtttga aattcagctt
      541 gattattcga ggagagatgg ctacgctgtt tctggttcag aatttctgat tcgtaattta
      601 ctagcagaac ttattcgcga agtcgttcag accccatacg ggaaatttgt ccttgatgaa
      661 aagaagctga ttactgtgag cgaagtgttt ttactaaaaa aacggctcga aaaggttgaa
      721 agtaagcttc aaattacctt tacagatgag cagatggaag aattgcccta tattctccac
      781 ggcatcatca aaagatccaa agtaacaaac aagaaatgga catttaaaat tgaaatgtat
      841 gacatcaaaa atacccgtga gttcccgata atgaaagaaa tgttttgggg gtatgatttt
      901 ttaagtgaaa acgatttact ttacttatcg ttacaagtcc tcgcttcgaa cttagtcgag
      961 tcggcgcttc atttctcaga cagtgaagaa atcgcctacg cagtcgacga gttcattcgt
     1021 ttactagaaa tgtattttgc gacggaaatc atgaagaaaa atgaatttaa agaaaaagtg
     1081 attttacatg ttaggccagc aatttaccga acaattttag gatttcaaat caataatcca
     1141 cttaaaaagc agtttattaa agagtacacc ccgacattta acattgtaga aaaagcctcc
     1201 aaaccttttg aaaaattggt tggtcacaag tggtcagaag aggagattgt gtatctttct
     1261 atgatagttc ttgggtggat gtatcaaatt gaagaaacag aacagccgat tttccgcgca
     1321 gttgtccttt gtaaaagtgg tacatccatc tctaaactac tgttagaaaa cttgaaaatg
     1381 atgtttccga atattgattt tcaaggagct tatgcggtgc ggcaattaag tacggtggca
     1441 cgcgatattg attttatttt tacgactgtg cccgttcaaa gcgatgccac catttttgta
     1501 atcccgtcca ttttaagtaa agacagccgc caaatcctta gggaacaagt ggataaagca
     1561 atcgaaatgg acagtcataa aaaaaccaaa gaactgcttg ctatgctaaa agatgaaatt
     1621 cccgaagaaa atattcgatt agtgcaagcc aaaatggaat cctttttcaa caaaaaagag
     1681 caacctatgg agaagaaaga accagaacaa atgcaaatta cggaagagca ggttcacttc
     1741 ttagaaacgc cacttgagtg ggagcaacta gtttcggtgg catttgcacc aatgttagaa
     1801 cgaggaacgg tggatgctag ttacattcat acttgtgaag aaatattcta tcaaaattat
     1861 gagcagatga tgattgggcc gaatatttat ttaccacatg ccaaacccgc aaacggggta
     1921 attgagcaag atattcagtt gatgataatg aaagcggaca caaaaacccc tgaaaatgaa
     1981 gcagtcaaaa tcatgattgc cttagcacca tctgaacaaa acaaacatat accattatta
     2041 ctaaaattga acgaaatttt cttgaagcct gagaaattag cgggaattct cgcttctact
     2101 aacaaaaaga aaatcgttga aatccttgaa agggggtgag cgtcgcgtgg attaccatga
     2161 tttgtttcaa aaagagttaa ccctgataaa ttcaagatac gagaatcagg cagaactttt
     2221 tgaatacacg agcaagatat tagagaaaga gcagtatgta gagccgactt ttagagaagc
     2281 ggtaacaagc cgagaagttg tttttcctac tggtctcgag atgaatggca tcaaaattgc
     2341 aattcctcat acagacacga tttatgtaaa acgtcctttt gtactcgtaa ataaactttc
     2401 tacgccgatt ccttttattc aaatgggaac gacagataag tggattgatg tcgaagtaat
     2461 tttcatgtta ggaatcaaaa atccccaaga tcaagttcca ctgctttcaa gtatcatgga
     2521 gaaatttatg gaagcagact ttgtggaaca aataaaaaca ataaatgata gcaatacttt
     2581 atgtgatttc ctaaaaaaac aatttggaga gtgattacaa tgaaaaaagt tatcgtagca
     2641 tgtggatcag gtgtagcaac aagccaaaca gtagcatcaa aagtagaacg aattttaaaa
     2701 gaaaaagggg ttcgtgcaac tgtagaagca gtagatatta agtctttaga gcaacatatt
     2761 aaaacaagtg atgtatatgt agctattaca aaagcgaaca aagaattcga tattccaaca
     2821 ttgaatggta ttgccttctt aacaggcatg ggcatggacg aagaaacaga aaaattactt
     2881 aacgccttaa aataaaccag ataaaacagg gagcgtgaaa aaatggagtc attacaatca
     2941 gttatacagt ttattttgaa ccttggagct gccgtttttg ttccagcact aatgattatt
     3001 attgggctaa ttgtacgaat gaaagtaaga gatgcagtca gtgcggggat tattctaggg
     3061 gttgctttcc ttggaatgaa catcgttatc ggctttatga ttgaagcttt aacaccagct
     3121 gcacaaggac tagctgagag aacagggatt aatttaagca tcttagatgg aggctggaca
     3181 tcgatggcaa cacttgcttg ggcatggcca tttgccttct tgatgttccc gctacaacta
     3241 ggtattaacg caattatgct cgttatcaat aaaaccaaaa ccttaaacgt cgatttatgg
     3301 aatgtttggg ggaaaatttt aacagccgta cttattatcg gtgtaacaca aaatgtttac
     3361 ttagcattta ttgttgccgg aattcaaatt gttacagaac taattctatg tgatgccaac
     3421 caacgtcaaa ttcaagagtt aaatggaatt ccaggtgtaa ccgtttctca cggtatgatg
     3481 attttctgta ttttcttaat gccgcttgac tggttactga aaaaaattcc agcacttcgt
     3541 aaagacatgg atgccaatgc gttaaaagat aaaattggta tttttgcaga aaaccatgtg
     3601 atgggcttta ttatcggtgg acttctgggg attgcagctg gttatgatgt tgcgaaaacc
     3661 ttgatgttag ccatgcaagc tgcagcagca ttaactcttt tcccgatggt tgcaaaacta
     3721 tttatgcaag ctctttcgcc actatctgat ggtatttctg agttcatgaa acgtaaattt
     3781 aaaaaccgtg aattgtttat tgggctagat tggccgattt tagcaggatg tagtgaagtt
     3841 tgggtagcaa tcgttctgat ggttccagtt acacttatct ttgcgcttat tttaccagga
     3901 aatggcgtat taccgttcgc tgggatttta aatatttctt tatgcgcacc agcacttatc
     3961 gtaacaggtg gaaacttaat tcgtatgatt atccttggaa caattaccac accgattttc
     4021 ttatatgtat ctactttctt cgctggaaca attacggatt tagcgcattc aacaggcgca
     4081 atttcgctaa aagctggaca acaaattaca tggagtacac ttgaatatcc agtgttccgt
     4141 tatatctttg cagaagcaag tcagtttact attttaggct ttatttttgt cgcaatttgg
     4201 gtagtattac tagtattcta tgtgaaaatg atgaaaaaac gaacaattga actagaaaaa
     4261 gctagctctt aagaaatagg agtgatgaga tgatttacac gataacatta aatccagcca
     4321 ttgaccggtt gcttttcatt caaggagagt tagaaaaaag gaagactaat cgagtcaaaa
     4381 aaacggaatt tgattgcggg ggaaaggggc ttcatgtttc gggagtgtta tccaaattcg
     4441 gtattaaaaa tgaagcactt ggaattgcgg gatcggacaa tctcgacaaa ctatatgcca
     4501 ttctaaaaga aaaacatatc aaccatgatt tccttgtaga agctggaact tcgacaagag
     4561 aatgcttcgt cgtcttaagt gatgacacga atggcagcac gatgatacct gaagctggtt
     4621 ttaccgtaag tcagaccaac aaagacaatc ttttaaaaca aatcgctaaa aaagttaaaa
     4681 aagaggatat ggtggtgatt gctggatctc cgcctcctca ttatacatta tctgatttta
     4741 aagaactact aagaactgtc aaagcaacag gagcgtttct cggatgtgat aattctggtg
     4801 aatatttaaa cttagcggtc gaaatgggcg ttgatttcat taaaccaaat gaagatgaag
     4861 tcattgccat tttggatgaa acgaccaatt cactagaaga aaatgtccgc aaattagccg
     4921 gaaaaattcc ctatctagtc gtttcgcttg gagcaaaagg atcactttgc gcgcataatg
     4981 gcaagttgta tcaagttatt ccaccaaaag tgcaggaacg caatgatact ggggctggcg
     5041 atgtgtttgt tggggcattt attgcaggac ttgcgatgaa catgccgatt actgaaacat
     5101 taaaagtcgc gacaggttgt tccgctagta aagtcatgca acaagacagt tcgagctttg
     5161 atttagaagc tgctggaaaa ctcaagaatc aagtaagcat tatacaattg gaggagagat
     5221 aatatgttat accaaaaaga acgtgaagat ttagcaaaaa tagtgaagac gatgtttgac
     5281 cgctttgaaa cgaatgcagc tggaggaaat gtaagtgtgc gcatgaatag tgagcacatt
     5341 attatgacac ctacactcat gagtcaagca aaactttgcg atctttcccc atatgaaatc
     5401 cttgtagtgg ataataacaa tgaagtcgta gaaggggacg gaagagttac tagagaaatt
     5461 aacttacacc gcgcttgtta cgtagaaaat ccaaaaattg gctgtgtact ccatgctcat
     5521 ccaaaagaat cgatgctatt tgccacactt ggaatggaat taccgaattt aacagaagca
     5581 acgcaaaaaa ttggccaaat tccaacactt gaatttgcgc cagcgactag tccagaactt
     5641 gcggaaatcg ttcgtaaaca cgttatcgaa ctaggagata aagctgttcc tagtgcaagt
     5701 ttattaaata aacacggtat tgtcgtatta gatacatcac ttcataaagc atacgacatg
     5761 ctagagcgta ttgaatacaa tgcctatatt gcggaaaaag cgttagtatt tgatgcgtta
     5821 ggtataaaaa aattagctca tgaccgcgaa ttaaattata atttggagga gtaactaatg
     5881 gaaaaattcc tttttaatgc aacgttattt gccagtgctt tattactgat ggtcggtata
     5941 tttaaaagct ctattccaat taccgccatt tctctcgtgt tagcagttgt ttcgcaacat
     6001 ttctttcgaa aaaaatatcc taaacaaact cgtagctatc gcgaaatagt cgcggcaaag
     6061 cagaaaaaag gatgaaaaaa gggatgaaaa tctagttgta gattttcatc cctttttatt
     6121 atagttggga acgttgtgat tttttcggtc ggacgtacaa tccgagtttt tcttgttccc
     6181 tcgttaacga aacgaataac gaaacaatca ttaagataat gacgatagaa aacggaaagg
     6241 ctgctataat cgatgcgttt tgaagagctg tgagtcctcc tgcataaagt agcacacttg
     6301 ctattcctgc ttggagtagg ccccatgtta ctttgacgga gtttggtgga tttaaagatc
     6361 cgcccgtcgt ttgcataccg agaacaaatg tggctgagtc tgctgaagta ataaagaaga
     6421 ctgcaattaa aatcatcgca acaatcgata aaaccatacc agctgggaat tcattaaata
     6481 ccccaaagag tacttgttca gttgctaaac ttgaaagccc agaatttcca tgttgttcga
     6541 caaaaatcgc cgagccgcca aatacggcaa accaaaatac actgactaaa gcgggcaaca
     6601 cgatgacacc gagcaagaat tggcgaatcg ttctgccgcg tgaaattctg gcaataaaaa
     6661 tcccaacgaa cggtgaccaa gaaagccacc aagcccaata aaaaatagtc catgagtcaa
     6721 tccattttcg agcatcaggc gcatcaggtg ctgtctgaaa actcatttgg atgatatttt
     6781 gtaagtagtc accaaatgaa ttggtgaagt tattcataat gaatagggta ggtccaagaa
     6841 taagggttaa aactaataaa actccagcaa cataaatatt tacattactt aaaagctgaa
     6901 tccctttatc aagtccagac atggctgata acataaataa aatggtgaca atgataataa
     6961 tggtaaattg gacagtaaaa ttgtttggaa cgccaaacaa gtatgtaaga ccaccattaa
     7021 tttgttgagc gccaaggccg agtgtcgttg caacaccgat gactgtcgca aaaacagcga
     7081 tgatatcaat caattgtcca attggacctt tggcatgttt ccctaaaata ggataaagag
     7141 tggcacttat taaacccggc gcatttttcc ggaatttgaa gtaagccagt gctaaagcga
     7201 caatcgcata aatcgaccaa gcagaaattc cccagtggaa gaatgaatag cgaagcgcat
     7261 ctttcatcgc tgcttgcgtg ccgacttcac cgccaggagc ttggactgca taatgagata
     7321 acggctcagc tgcaccccag aaaacgaggc caattcccat tccagcacta aacaacatcg
     7381 caaaccaaga cttattacta taccccggtt cctcaccagg ttttccgagg cgaatcgagc
     7441 caatcggact taaaactaaa aacaagcaga agataataat aatcgctaca acaattaaat
     7501 agtaccaacc aaaattactt gttagaaatt tttggatatt ggttgtaaaa gcttcaaatt
     7561 gttttggcaa aaaggctcca aataaaacgg ctaataaaac aagacaaccc gatccccaaa
     7621 aaacacttgt taattttttc aatacatcac ttccctttat attctctgta tctatttccc
     7681 catgttagca aaaaggtaac attcttttta atagtaacaa aaaaagtagt gctctgacaa
     7741 atcatgtaag aggaaaaagg gggagaagtc agcaaaaaac tggaacgcca ttcagcatcc
     7801 cagttagttt tacaatgttt ttttcgcgtt ttcgagagca actttaattt gatcaaatcc
     7861 agtcccgccg taagaatttc ttttttgcac ggcagtttta gaggaaagca ccacgtaaat
     7921 atcatcatca ataagtggat ttatttcctg atagtggcta agcgctacat cttgcaaata
     7981 aatcccattt tgcgtacatt caagcaccaa tttcccaaca atctcatgcg cttctctaaa
     8041 tggaacgcct tttttcgcta aataatctgc tagttccgtc gcattggaaa aatctttttg
     8101 cgtcgattct tccattattt ctgtgttgat cttcatcgtt tcaatcattc ctgcgaaaat
     8161 atctaagctt gtttgaaccg tctcaagcgt atcaaacatg ccttccttat cttcttgcaa
     8221 gtctttattg taagcgagtg ggagaccttt taaaaccgtt agcatgccga acaggtttcc
     8281 gtaaacccgg ccagttttac cgcgaattaa ctcagccata tctggatttt tcttttgcgg
     8341 cataattgaa cttcccgttg aaaaagcatc cgttaactcg acaaattgaa attcatgact
     8401 cgtccaaagt atcaattcct cacaaaaacg cgataaatgc atcattaaaa tagaactgtt
     8461 actaagaaac tcgataataa aatcacgatc actcacgccg tctaaactat tttcatagat
     8521 agcggaaaaa ccaagtaatt cagcgctgta ggctcggtca atcggaaaag tcgtcccagc
     8581 cagcgcagca gaaccgagcg gtgaaatatc aatccgtttg acactttctt ctaaacgctc
     8641 caaatcccgt gtaaacattc caaagtaagc taataaatga tgtgcaaaag agatgggttg
     8701 ggcgtgttgc aagtgtgtat agccaggcat aatcgtttcg acgttcgcct ccgctttttg
     8761 gactagcacc acgcgtaaat gttttaatga ctgaataatt tctgctacgg cttgttttaa
     8821 atacaaatgc atgtctgttg caacttgatc attccgactg cgcgccgtat gaagttttcc
     8881 agcgactggg ccgatttcct cgtgcaatag tttttcgata tttaaatgaa tatcttcgtt
     8941 aactgtgctg aattcgagct caccaagcgc taatttttct tggaggattt ttaatccggc
     9001 cgtaatttca gctgcttctg aagcaggaat aattccgcat ttgctgagca tagcgacatg
     9061 cgctaaactt cccgccaagt cttcttttgc cattttttga tcaaaagaaa tcgaagcacc
     9121 aaaatcgtca atccatgctt cacttttccc ttgaaaacgt ccgccccata gtttttccat
     9181 tttttacacc tcagttgtta ttgtcacttt tgaattaact tctgcgctta ctttcgttgg
     9241 taatccccaa agcttgatga aaccaactgc tgcatcttgg tcgaatgtat cggaagacgt
     9301 gtaagtcgct aggttttcat cataaagcga atttggtgat tttcttcctt ccacaatggc
     9361 atgaccttta aataatttga cgcgaatcgt accgttcacg aatttttgcg tggattttaa
     9421 gaaagcaact aatgcttctg tcaaaggtga gaaccatagg ccattgtaaa ttgtttcgct
     9481 gattttttgt tcgataatag gtttgaaatg tgccacttca cgaacaaaag ttaaatcttc
     9541 taattcttta tgtgcagtaa tcaaagtgac tgcggccgga cattcatata cttcacgtga
     9601 tttaatgcca actaaacgat tttcgatatg atcgattcta ccgacaccat gttttccagc
     9661 aatttcattt aaagtaagga ttaaatttgc taggctcata ttttctccat ttagagaaat
     9721 tggaatacca gcatcaaacg taatttcaac aatatctggt gtatctggtg cgtcttctaa
     9781 actcactgtt aagtcgtaag ctgcttctgg tggtgttgtc catgggtttt caagcacccc
     9841 acattcgtta cttctacccc aaaggttttg gtcaatcgag aaaggattat ctaaatcaat
     9901 tggaacaggg atgttatgtt ctttggcgta attgatttct tcttctctag accatttcca
     9961 atcacggaca ggggaaacaa cttttaaatc aggagcaagt gcatgaatcg ctacttcaaa
    10021 ccgaacttgg tcatttcctt taccagtaca accatgagcg atagcagagg caccttcttg
    10081 acgagctact tctactaatt ttttcgcaat taacggacga cttaaagcgg aaataagcgg
    10141 atattttcct tcataatatg cgtgggcttg aagggcaatt aacgcaaaat cctccgcgaa
    10201 ttcttctttt gcatcaatcg tgtaggattc acttgctcca acagtaatgg ctttttcttt
    10261 aataaaatcc aaatttttgc cttcaccaac atctaagcaa catgcaataa cttcataacc
    10321 tgattctact aaccactgaa ttgccacaga agtatctaac ccacctgagt aagctaatac
    10381 gattttttct ttcgcca
//
LOCUS       DASDXX010000095        10383 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.095, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000095 DASDXX010000000
VERSION     DASDXX010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10383
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.095"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..275)
                     /locus_tag="U0280_001793"
     CDS             complement(<1..275)
                     /locus_tag="U0280_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM2271722.1"
                     /translation="MQVQKCRFFVLLLPALYLLYGISLALQFGNNADLINTIANSCLL
                     FLATIILTNMARLKNWIDFIWFCVFILYIIILLHLVAYIAVGDFVNST"
     gene            483..1448
                     /locus_tag="U0280_001794"
     CDS             483..1448
                     /locus_tag="U0280_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2271723.1"
                     /translation="MKELLGLLKEGNKSALTAALVNTVVSIIKGITYFFTGNIAMFAE
                     TLHSLGDAANQFFVFIGSALSKKRPTKRFPHGFGRMVNLVLLGAVIVVGIMAFETIRE
                     GFAHIIHPTSSTGFLINLTVLLLCTVLEFSVLVKAMHEIAHDVGLESKGLRLFKDSIL
                     NLGKAKAATKLVFLEDSVATGGGLLAMIAVIISHFTPFHQAEGIASMLIGVMMFIVVG
                     KVFLDNAAGVIGESDQSMHLTVGQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPM
                     LTLAEVDDIKDRLEESIGKLRGVADVLISFDEDDAIRNWEYGDGR"
     gene            complement(1493..2035)
                     /locus_tag="U0280_001795"
     CDS             complement(1493..2035)
                     /locus_tag="U0280_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271724.1"
                     /translation="MRITGERIYLRPFQITDANQKLAFHLANKAFFEGYSMERDDRFY
                     TIKEQQSLISRLEDFAASDVEYYYGIFLHDTDELIGTINLFSILRESLQSAFIGYFLD
                     KEHNGNGYATEAVELIVDFGFDILGLHRIEAGVMPKNERSKQVLLKAGFHLEGLAVQN
                     VRINGNWEDHQVLAIINPGD"
     gene            2225..3127
                     /locus_tag="U0280_001796"
     CDS             2225..3127
                     /locus_tag="U0280_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEM2271725.1"
                     /translation="MNVNAETEDATLLLDGLLQNVAIIRFDTNKKVTYANALFAEAMG
                     YSEEEMLTLSHPDLCFPDFVQSASYKAMWTNLLAGQKFQNKIERKNARGERVWFEATY
                     IPIIREDTVVGVAKIATDITRREETVHDFASGLKSMATNLKEHSSVGKTRSEALLELV
                     KSITKESNENTDTLHDLQTEAQNIHGIINTINGIASQTNLLALNAAIEAARAGDAGRG
                     FSVVAEEVRKLSSRVEEAIKEVEKSVNGITQEINTISSGTERVEAKVEESQEVLILSL
                     EDFSQIESASTALDQNAGAFTKMI"
     gene            3155..3361
                     /locus_tag="U0280_001797"
     CDS             3155..3361
                     /locus_tag="U0280_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271726.1"
                     /translation="MKLIGKHPSGRAIIIRLNNQEYHYETANSFGSATSLTRAKTEAR
                     ADSFTSSEMNQGLHIGNWHWKELG"
     gene            complement(3401..3754)
                     /locus_tag="U0280_001798"
     CDS             complement(3401..3754)
                     /locus_tag="U0280_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271727.1"
                     /translation="MKKLFDETNEFEAKYYRTIWYGYIDNEFAPELSDEIKQLIQSDL
                     TEKTANPIEATHWVFYSETQAGDAIGDKVRSSIMVRHRDNKFVVHYNVSDFQFVTVFD
                     VATAFKDQLEQALNA"
     gene            complement(3783..4184)
                     /locus_tag="U0280_001799"
     CDS             complement(3783..4184)
                     /locus_tag="U0280_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance thiol transferase FosX"
                     /protein_id="HEM2271728.1"
                     /translation="MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKE
                     KFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQG
                     EGRSIYFYDFDNHLFELHAGTLEERLKRYHE"
     gene            complement(4199..5578)
                     /gene="rlmD"
                     /locus_tag="U0280_001800"
     CDS             complement(4199..5578)
                     /gene="rlmD"
                     /locus_tag="U0280_001800"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM2271729.1"
                     /translation="MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEE
                     VVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDI
                     VIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGSGQVETGLFGANSHQL
                     VPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLV
                     FITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKL
                     MELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVK
                     EVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRS
                     GCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVET
                     VVLLQLKDK"
     gene            complement(5643..6023)
                     /locus_tag="U0280_001801"
     CDS             complement(5643..6023)
                     /locus_tag="U0280_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM2271730.1"
                     /translation="MTKPLKLVYTENGFDTGSFLIDDKLTEYSPADLMLMSIASCSAI
                     VFRNILKKKRVNFTDLWVDATMERIPEEENRISAIHLHFKITGAALDPKALEKALKLT
                     PKYCSMVRSVEKSILVDESLEIMP"
     gene            6130..6774
                     /locus_tag="U0280_001802"
     CDS             6130..6774
                     /locus_tag="U0280_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HEM2271731.1"
                     /translation="MEGVGNKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRI
                     LEMFYEDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNI
                     SEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQTFDNP
                     GLLDYYKHLHSRYDSWFESYDKSETLVINIDEIDINQPNDADYVMQLIHEKLKR"
     gene            complement(6804..7673)
                     /locus_tag="U0280_001803"
     CDS             complement(6804..7673)
                     /locus_tag="U0280_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEM2271732.1"
                     /translation="MWKKVVKYTKKNGIVQIGQTVSARVGRNDVSGNAAQLAYYMLFS
                     IFPMLLIAATLLAYLHIDKDSVFNMIKEFAPDQIMDFLEENLNNLLTQKNGGLLSIGI
                     IATLWSASNGMNAVMKSLNKAYGVTNKRNYVVQRLLSMFFTLAMLATVGATLLLLVFG
                     QQIGMFLINHLNFSEDFLSFWNNLRWTVTLIVIFVVFTFLYWVAPNRRSTLISVLPGA
                     LFSTIGWTVASLGFAYYVNNFGNYSATYGSIGVIIILMLWFYLTGIILMIGGELNATL
                     AIRKKKKELGEIN"
     gene            7763..7984
                     /locus_tag="U0280_001804"
     CDS             7763..7984
                     /locus_tag="U0280_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1128 domain-containing protein"
                     /protein_id="HEM2271733.1"
                     /translation="MNLETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALI
                     DIYQLIKRKSNFSPREMQLFAEELRRIRK"
     gene            complement(8004..8810)
                     /locus_tag="U0280_001805"
     CDS             complement(8004..8810)
                     /locus_tag="U0280_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HEM2271734.1"
                     /translation="MGEKMAIWRTKKPATKQKIVSDLQESGIKKGDTIIFHASMSKAH
                     WICGGPVTVILALQELVGESGNIVMPAQTGQLSDPAKWENPPVPESWWKIIRRETPPF
                     DPLVTPTRGMGVIAETFRTMPDVERSFHPYHSFCAWGKDKKQILANQPLAKSMGDESP
                     LGKMYQLDAKIILFGVDNNNNTSLHLAEERSNVFPLIENQAAFLKNGEIIWEKYQEID
                     YNSEVFIALGRAYEKERDFHPTTIIGAPTKIYDMRDLVDFGTDYFQTKNH"
     gene            complement(8936..9694)
                     /gene="map"
                     /locus_tag="U0280_001806"
     CDS             complement(8936..9694)
                     /gene="map"
                     /locus_tag="U0280_001806"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEM2271735.1"
                     /translation="MITLKSRREIDEMKAAGKILADTHKELKKIIKPGITSWDLEVFT
                     EEFLRKNGATPEQKGFEGYEYAICASINDEICHGFPRKQKLNQGDIITVDMVVNYRGA
                     LADSAWTYAVGEVPDDVKHLMDVTHKALYLGIEQAQVGARVGDIGHAIQTYVESENLA
                     VVREFIGHGVGPTLHEKPDIPHYGTAGKGPRLKEGMVITVEPMVNMGAWKAKMDDNGW
                     TARTVDGSLSAQYEHTFAITKDGPEILTYQGEND"
     gene            9882..10328
                     /locus_tag="U0280_001807"
     CDS             9882..10328
                     /locus_tag="U0280_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM2271736.1"
                     /translation="MTKVMIVYASMTGNTQEIADILGEELEKYDIEVEIEECISVDPE
                     DLLEYDGALIGGYTYDDGQLPDEFVDFYEDMADVDFSGKVCASFGSGDTFYDEYCLTV
                     DLIETRLKEQGATVPVAGLKVDLDPDEEDVVRAESYAKTFVDVLKG"
BASE COUNT         3078 a         1999 c         1974 g         3332 t
ORIGIN      
        1 gtactgttta cgaaatcccc aacagctatg taagccacaa ggtgtaataa gataattata
       61 tatagaataa aaacgcaaaa ccatataaag tctatccaat tctttagtct cgccatgttg
      121 gttagtatga tggttgctaa aaaaagtaag caactatttg caatggtatt gattaaatct
      181 gcgttattcc caaattgtag tgcaagcgaa atcccgtaca agagatataa cgctggcaat
      241 aacaacacaa aaaaacggca tttttggacc tgcattctcg tattccaacg ccttccgttt
      301 caaaatcagc tctcagactc tctgaataag ctcctagtat cagtttagca gatataaaaa
      361 tgaaaagaaa gcttgtttgt gcttacattt ttgcaagctt ctgtaaggct ttcgggttct
      421 tattttcttt ttggtaaaaa aagtgctaca atttcttaat gatatttgtg gaggagacta
      481 ggatgaaaga attattaggg ttattaaaag aaggtaacaa atccgcctta acagcggctc
      541 ttgttaacac cgttgtttct attattaaag gtattactta tttttttaca ggaaatatcg
      601 ccatgttcgc ggaaacgtta catagtcttg gagatgcagc aaatcaattt tttgttttca
      661 tcggctctgc tttaagtaaa aaacggccaa caaaacgctt tccacatggt ttcgggcgaa
      721 tggttaactt agtgctactt ggtgctgtca ttgttgttgg gataatggct tttgagacga
      781 ttcgtgaagg ttttgcgcat attatccatc caacaagttc cactggtttc cttataaacc
      841 ttactgtgct cctactttgt accgtgctag aattttctgt tttagtaaaa gcaatgcatg
      901 agattgcgca cgatgttggc ttagaatcaa aaggacttcg cttatttaaa gacagtatcc
      961 taaatctagg taaagcaaaa gctgcaacca aactcgtatt cttggaagat tccgttgcaa
     1021 ctggtggtgg acttcttgcg atgattgcgg ttattatttc tcactttacc cctttccatc
     1081 aagcagaagg tattgcatcc atgttaattg gtgtaatgat gtttatcgtc gttggtaaag
     1141 tctttttgga caatgcggct ggagttattg gcgaatcaga tcaaagtatg catttaactg
     1201 tcggtcagct cgtaatgagt gatcctgatg tgcgcgatat tcaagttcta accgttctta
     1261 aagaaggcga tgttttccat gtcgatgtgg aagtggaatt agatcccatg ctcaccctcg
     1321 ctgaagtgga cgatattaaa gaccgtttgg aagaaagtat cggaaaatta cgcggtgttg
     1381 ctgatgtact tatttcattt gatgaagatg atgccatccg taactgggaa tatggggacg
     1441 gacgttaaaa atagaaaaag ccaagtgcgc ggactgcgac acttggcttt ttttagtctc
     1501 caggattaat aattgctagg acttgatgat cttcccaatt tccatttatg cggacatttt
     1561 gtactgcgag cccttctaaa tggaagccag cttttaaaag gacttgtttg gaacgttcat
     1621 ttttcggcat tactcctgcc tcaattcggt gcaggccaag aatgtcaaaa ccaaaatcta
     1681 ctatcaactc cactgcctcg gttgcataac catttccatt atgctcttta tccagaaaat
     1741 aaccaataaa cgcagattgt aaagattccc gcaaaatact aaataaatta atcgtaccaa
     1801 taagttcatc cgtatcatgg aggaaaatcc cataatagta ctccacatca ctcgcagcga
     1861 aatcttctaa tcgtgaaata agcgattgct gttcttttat cgtataaaaa cgatcatccc
     1921 gctccataga ataaccttca aaaaaagctt tattcgctaa atgaaaagct agtttttgat
     1981 tggcatctgt tatttgaaaa ggtcttaagt aaatccgttc ccccgtaatc cgcatcctta
     2041 tccctcccgc atttttctaa attataagat tgttctgatg tgattgcaag tatcactgct
     2101 aagcttaatt tttctatata cccattttat taaaaaataa acttcccatt acgaatacat
     2161 gtgtgttatt atgttgatgt tggttgtttt tatattattt ttctaaaaaa tggaggtttt
     2221 tttaatgaat gttaatgcgg aaacagaaga cgcaactctc cttctcgatg gtttacttca
     2281 aaacgtggca ataattcgtt ttgatactaa taaaaaagta acttatgcta atgccctttt
     2341 cgcggaggca atgggatact cagaagaaga aatgttgact ttatcccacc cggacttatg
     2401 ctttcctgat tttgtccaaa gtgcaagcta taaagcaatg tggacaaatt tgcttgctgg
     2461 gcaaaaattt caaaataaaa ttgaacgaaa aaatgcacgc ggtgaacgtg tttggtttga
     2521 agcgacttat atcccgatta tacgtgaaga tacggtcgtt ggagtagcca aaatcgctac
     2581 agatattacg agaagagaag aaacggttca tgactttgca tctggtttaa aaagcatggc
     2641 tacaaattta aaagaacatt ccagtgttgg aaaaacgcgc agtgaagctc tccttgaact
     2701 cgtgaaatca atcacgaaag aatccaatga aaataccgat acacttcacg atttgcaaac
     2761 agaagcccaa aatattcacg gcattattaa tacaattaac ggtattgctt ctcagactaa
     2821 tttacttgcc ttaaatgcag cgattgaggc agcacgtgct ggtgacgccg gacgtggatt
     2881 tagtgttgta gcggaagaag ttcgtaaact ttcgagtcgt gtagaagaag caattaaaga
     2941 agtggaaaaa agtgtcaacg gtatcacgca agaaattaat actatctcaa gtggtacgga
     3001 acgtgtcgaa gcaaaagtcg aggaaagcca agaagtgctt attttatctt tagaagactt
     3061 tagccaaatt gaatctgcct ctactgcctt ggatcaaaat gccggtgctt tcacaaaaat
     3121 gatttaaccg actgaaaaaa ggagcgaaga aaccttgaaa cttattggaa aacatccttc
     3181 tggtcgtgcc attattatcc gtttgaacaa ccaagaatac cattatgaaa ccgcaaatag
     3241 ttttggaagt gcgacttcat taacacgagc aaaaacagaa gctagagccg atagttttac
     3301 atctagtgaa atgaaccaag gtttacatat tggtaattgg cactggaaag aacttggatg
     3361 aacgaaaatc ccgtctataa aaatagacgg gattttttat ttacgcattc aatgcttgtt
     3421 ctaattggtc tttaaaggcg gttgccacat caaatacagt aacaaattgg aaatcgctca
     3481 cgttgtaatg gacgacaaac ttattatccc ggtggcgaac cataatggaa gagcggactt
     3541 tatcaccaat tgcgtcccct gcttgggttt cgctataaaa aacccagtga gttgcttcga
     3601 ttggatttgc tgttttttct gtaaggtcgc tttgaatgag ttgttttatt tcatcactta
     3661 attctggcgc gaattcattg tcgatgtagc cgtaccaaat agttcggtag tactttgctt
     3721 caaattcatt cgtttcatca aatagttttt tcatgtttgt ttcctcctat taggtgttat
     3781 ttctattcgt gatacctttt taagcgttct tctaatgtac cagcgtgtaa ttcaaacaga
     3841 tgattatcaa aatcataaaa ataaatggaa cgtccttcac cttggactct gggacgttct
     3901 ggtttcattt ccacaccgag agctttaatc cgctcagtat attcatccac ttcctcggat
     3961 tgaatttgga aagcaatatg attgtaagtt cgctcttgta aagaatctcc ttccataatg
     4021 caaatccaca aaccagctat tagaaaaaat ttttctttgg aaagcgaaaa tgttttgtcg
     4081 ccactagaat agatttcttc tgcattaaaa atattctgta agaaagcagt tgttttattc
     4141 aaatctttca caattaaagt gatatggctt aatcctgaaa tcatgtacca ccagtccttt
     4201 atttatcttt taactgcaag agtactacgg tttccacgtg agctgtttgc gggaacatat
     4261 cgacgggttg catatagcga atgcgatatt tcttcgcgag taaagctaag tcacgtgcta
     4321 atgtggatgg attacaggat acataaacaa gttgttttgc ttccacatct agtaatgatt
     4381 ttattaggcc ttggtcacag ccgcttcttg gtgggtcaac gatgactgcg tctgggcgga
     4441 aaccttcatt tacccatttt ggtaatacgt cttctgcttt cccaacttca taataaacat
     4501 tttcgatgcc attcttctcg gcgtttcgtt tagcgtcttc aatggattct ggaataatat
     4561 ccataccacg aacttctttt acttttccgg caaaagcttg gccgattgtt ccaacaccgc
     4621 aataagcatc tactagtgtt tcactgcctg ttagtacgag tgctttttcg acttcttgat
     4681 aaagtcgctc tgtttggaac gggtttaatt ggaaaaaggc acgagcagat agatcgaatt
     4741 ctagttccat taatttctct tcaatgcttt cttttcctgc taaaaggaac gtttcgtcac
     4801 cgaaaataag tgaggatttt gcttgattca cgttttgcat aatcgaagtg acttccggaa
     4861 gagctgcttc gatttctgca agcatttcgc gttttttagg taacttttta ctatttgtaa
     4921 tgaagacgag ctgtgtttcg ccggttttca cgccagtacg aacgacgata gttcggacga
     4981 taccactgcc agctttttca tcataaattg gcacgccgta tttttctagt aagtcgcgaa
     5041 caaaattcgt tactttgatg gtaacgggtt gttggacgat acaatcttca attggaacaa
     5101 gttggtgaga attggcaccg aaaagccctg tttcgacttg accactgcct accattcttg
     5161 tttggaattg gcttttatta cggtaacgcc atgggtcttc cattccgatt gttgggcgga
     5221 tttttaattt ggttggatcg atttttgtat gtttttcgat tgattgaata acaatatctc
     5281 tttttagttc aagttgggcg ctataggcca catgttgcaa ctggcaacca ccacacgcct
     5341 cgtaaactgg gcaaggtgcg gtaactcggt ttggagattt tttacgaatt ttatttaatt
     5401 ttgcttcggt gaaacgatca cgaactttga ccgcttcgac aactacttct tcaccggtaa
     5461 ttgcgccagg tacaaataca actgcttttt taaagtagcc gattccttcc ccgttgattc
     5521 ccatgcgccg aatagttagc gggaattttt gtccttcttc tactggattt tgattcatta
     5581 ttttcctcca tcattccaag tcttcattaa tactaacaaa aaaacagcag cttgtcagta
     5641 gtttatggca tgatttcaag actttcatcg acaaggatgc ttttttcgac agaacgaacc
     5701 atcgaacagt atttcggtgt taattttaat gctttttcaa gtgcttttgg atccaaggca
     5761 gcaccggtta ttttaaaatg aagatgtatc gcgcttatac gattttcttc ttctgggatg
     5821 cgttccattg tggcgtctac ccataagtcg gtaaagttta ctcgtttttt ctttaaaatg
     5881 ttacgaaaaa caatggcgct acaactggca atagacatta acatcaaatc cgctggtgaa
     5941 tattcggtca gtttgtcatc gattaaaaaa cttcctgtgt caaacccatt ttcggtataa
     6001 actagcttta atggttttgt catggttatc cctcatttct tctcttttat cgtacaaaaa
     6061 atctccttat taagcaaatt agtagtataa tgaacagata gtcgaccaaa aaaggaggct
     6121 actcatgtta tggaaggagt aggaaataaa gtgattgttt tagcaggaat gattggtgct
     6181 gggaaaagta gctatacaga gctaatcgca aatgaactcg gaacaaaggc attttatgaa
     6241 agcattaagg ataaccgcat ccttgaaatg ttttatgaag acccaaaaag atgggctttt
     6301 gccttacaaa tatatttttt aaatacccgc tttcgtagta ttaaagctgc gttaacggat
     6361 caaaataatg tgcttgatcg gagcatatac gaggacgcgc tttttacgca aattaatttt
     6421 gaagaaggta acatttcgga gcctgagatg gatacatacc ttgatttact cgacaatatg
     6481 atggaagaac ttgcttatat gccgaaaaaa gcgcctgatt tgttgattta tttgcgagga
     6541 agtttagaca ctgtattgag ccgaattgct ctccgtggtc gtccttatga acaaaccttt
     6601 gataatccag gtttacttga ctattacaag catctgcata gtcgttatga cagctggttt
     6661 gagtcttatg ataagagtga aacccttgtt attaatatcg acgaaataga tattaatcaa
     6721 ccaaatgacg cagattatgt catgcaactt attcatgaaa aattaaaacg ctaaaacagg
     6781 ctttttgctg ttttagcgtt tttttaattg atttcgccta attctttttt ctttttccga
     6841 atcgccagtg tagcgttaag ctccccgcca atcatcaaaa taatgccggt caaataaaac
     6901 cataacatta aaataataat tacaccgata ctgccatatg tggctgaata gttgccgaaa
     6961 ttatttacgt aatacgcaaa acctagcgaa gcaactgtcc aaccgattgt tgaaaaaagc
     7021 gctccaggta gaacactaat caacgtactg cgccggtttg gtgcgaccca atataaaaag
     7081 gtaaatacga caaaaataac gatgagtgta acggtccaac gaagattatt ccaaaagcta
     7141 agaaagtctt ccgagaaatt caaatgatta attaaaaaca tccctatttg ttgtccaaat
     7201 acaagtaata gcaaggttgc ccctactgtc gcaagcattg cgagtgtgaa aaacatcgat
     7261 aataatcgtt gcacgacgta gtttcgctta ttggttacgc catacgcttt attgagcgat
     7321 ttcatgaccg cattcatgcc attcgaggcc gaccataaag tcgcgataat cccgatagaa
     7381 agtaatccgc catttttctg cgttagtaag ttatttaaat tttcttctaa aaagtccata
     7441 atctggtctg gcgcgaattc tttaatcata ttaaaaacgg aatctttatc aatatgaaga
     7501 taggcaagta atgttgccgc gattaagagc attggaaaaa tcgaaaacag catataataa
     7561 gctaactgtg ctgcatttcc tgaaacatca tttcgaccta ctctcgcact tactgtttgg
     7621 ccaatttgaa caatcccgtt tttctttgta tatttaacta cttttttcca cactgataag
     7681 gccccctgtt ctagtcattc gtctggaagt ttttcttcta ctatggtaaa attttgtcta
     7741 ttagcttgaa aggagcaaaa agatgaatct tgaaacccct tcacaggaaa acttgaattt
     7801 tatgttaacc gaaattacaa cgaaactaaa aatggtgaat gttggtgttt ttgaaaatct
     7861 ggagcttgac tctgttgatt ataacgcact tatcgatatt tatcagctaa ttaaacgtaa
     7921 atccaatttc agcccgcgtg agatgcaatt atttgcagaa gaattacgcc ggattcgcaa
     7981 ataaaacaaa ttccagccac tttttagtgg ttttttgttt ggaaataatc ggtaccaaaa
     8041 tccactaaat cacgcatatc ataaattttc gtcggcgctc cgataatcgt cgttgggtga
     8101 aagtcacgtt ctttctcata agcgcgacct aacgcgataa acacttcact attataatca
     8161 atttcctgat acttctccca aatgatttcg ccatttttta gaaaagctgc ctggttttcg
     8221 atgagcggaa atacattgga gcgttcttcc gctaaatgaa gcgatgtatt gttattatta
     8281 tctaccccga acaagataat tttcgcatca agttgataca ttttccctag cggcgattca
     8341 tctcccatgc ttttcgcaag tggctggttg gcaagaattt gttttttatc ttttccccaa
     8401 gcacaaaacg aatggtatgg atgaaaacta cgctcaacat ctggcatagt acgaaatgtt
     8461 tcggcaatga cacccattcc acgagttggt gttacaagcg gatcaaatgg cggtgtttct
     8521 ctgcgaatta ttttccacca actttcagga actggcggat tttcccactt tgcaggatca
     8581 cttaattgac ctgtttgagc cggcattact atattgcctg attcaccaac cagttcttgc
     8641 aatgccaaaa taacggtaac tggaccaccg caaatccagt gtgcttttga catggaggca
     8701 tgaaaaataa tcgtatctcc ctttttaata cccgattctt gtaggtccga cacgattttt
     8761 tgttttgttg ctggcttttt tgttcgccag atagccattt tttctcccat tgtatgtcac
     8821 cgcctctaaa aataaagcca gatgcctaga aaaaaacggc aaactaaaag cagctgtgtg
     8881 aaacttgtgc ttttacttgc attctgttct aaatgcatct ggctaaatag tttaattaat
     8941 cgttttcgcc ttgatacgtt aaaatttctg gaccatcttt tgtgattgca aaagtatgtt
     9001 catattgcgc agacaaagag ccatcaacag ttctagcagt ccagccatta tcgtccattt
     9061 tggctttcca agcacccata ttgaccattg gttccactgt aataaccatg ccttctttca
     9121 agcgaggtcc tttgccagct gtaccgtaat gtgggatatc tggtttttca tgtaaagttg
     9181 gtccaacgcc gtgaccaata aactcacgta caacagcaag attttctgat tctacatatg
     9241 tttgaatagc atgaccaata tcgccaactc gtgcgccaac ttgtgcttgt tcaatcccta
     9301 aataaagtgc tttatgcgtt acatccatta aatgtttcac atcatctggc acttcaccta
     9361 cggcataagt ccaagcagaa tcagcaagtg caccgcgata attcacgacc atatctactg
     9421 taataatatc gccttggtta agcttttgtt tgcgcgggaa gccatgacaa atttcgtcat
     9481 taatacttgc acaaatagca tattcataac cttcaaagcc tttttgctct ggagtcgcgc
     9541 catttttacg taaaaattct tctgtaaata cttctaaatc ccagctagta atacctggtt
     9601 taataatttt tttaagttct ttatgcgtat cggcaaggat tttccctgct gctttcatct
     9661 catcgatttc gcgtcttgat ttgagtgtga tcatcttttc attccctcct aaaatttcca
     9721 ctatttacta ttatagctcg aaacccctta gaaataaagt aatctggaaa aaaggttgca
     9781 gtttttctga agacatttat aatagaatgt atcagttaaa aaatggtggg ctggtttgtg
     9841 ccattttaaa caataaaaaa ttcagaaaat ggtgatgcaa aatgacaaaa gtgatgatcg
     9901 tttatgccag catgactggt aatacacaag aaattgccga cattttaggt gaagaattag
     9961 aaaaatacga tatcgaagta gaaattgaag aatgtatttc agttgatcct gaagatttac
    10021 tagaatatga tggcgctcta atcggtggct atacatacga tgatggtcag cttcctgatg
    10081 agttcgttga tttttatgaa gatatggcgg acgttgattt tagcggcaaa gtttgtgctt
    10141 ctttcggttc cggcgatact ttttatgatg aatactgttt aacagttgat ttaattgaaa
    10201 ctcgtctaaa agagcaaggt gcgaccgttc ctgttgctgg gcttaaagta gaccttgatc
    10261 cagatgaaga agatgttgtt cgcgcggaaa gttacgcaaa aacatttgtg gatgtattaa
    10321 aaggataatt cgaaagcaag tcctcttttt cggacttgct tttttattta tttaaaaata
    10381 gcg
//
LOCUS       DASDXX010000096        10352 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.096, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000096 DASDXX010000000
VERSION     DASDXX010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10352
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.096"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..658)
                     /locus_tag="U0280_001808"
     CDS             complement(<1..658)
                     /locus_tag="U0280_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEM2271737.1"
                     /translation="MKKISMRERFALDPRVIKVLISITIAVILFPIMGDWIVYPTYVF
                     NAIYITAQMSKGDTYKSSIERIIGTIVGGLLAAFVYLLVPNHHYIMIPIGAALAVMLS
                     YLFTKKFTMVIVVITVMVLVGKGDGEPIVFLRDRLFDTMIGLVIGFVVYALYPRKKNK
                     KLNQVFISQEKAVLEKIKEIDINSEDAKSLAPKIKGLWKQLIDLRKTREQIITDSSFV
                     A"
     gene            complement(655..1575)
                     /locus_tag="U0280_001809"
     CDS             complement(655..1575)
                     /locus_tag="U0280_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271738.1"
                     /translation="MKKFLLDKIGARGLIQMLQAFIYASICVVVHTVIFPDLAGVLPI
                     VVLIGIISMQPTYGITRKVIPQIALAFTLACIFVIISTYFFPINVYIYYVVMIVVILA
                     VNFLMPQKYMVMTLAIGTALYFLGTDDLPMPLYTMIIVALMDVFVFFLLVQLVVKYVH
                     LPLEKTVQTIMKQLVGLFDKEIESVFKNNGKFIAKPLYSIFVQSQMFIKEYSASKKAN
                     PRHVELYQALLPNYLQLFFHMQTMEDIGRVGLSEEAKQALAQINVKVSDEINAKEANP
                     VASFHVKKFVENFLAIKVGMKELVEGREQK"
     gene            complement(1730..2389)
                     /locus_tag="U0280_001810"
     CDS             complement(1730..2389)
                     /locus_tag="U0280_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEM2271739.1"
                     /translation="MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSI
                     ATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATN
                     DKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFL
                     GKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKI
                     Q"
     gene            complement(2408..3046)
                     /locus_tag="U0280_001811"
     CDS             complement(2408..3046)
                     /locus_tag="U0280_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2271740.1"
                     /translation="MIKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAENGREGADMAL
                     ELRPDIILMDLVMDEMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYM
                     LKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRENEILLLI
                     AEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLVEKK"
     gene            complement(3043..4101)
                     /locus_tag="U0280_001812"
     CDS             complement(3043..4101)
                     /locus_tag="U0280_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2271741.1"
                     /translation="MSFSKLMMAVCSGLLLVATAIGTVGYYFFSEGSWYKILIEQKIF
                     YIPFVVFVPLTAISIGLIIGGLLGYFVKQKFESIDFSIRLLGQGDLEKKITSEEDENF
                     LEVQQVYKQIDRLRDKMKAQTILTQKLASDRAESTGQTKEAILSEERHRIARELHDSV
                     SQQLFAAMMLLSALNEQSEKSATPAMQKQLKMVESIVNESQSEMRALLLHLRPTQLEG
                     KSLKTGIEQLLKELTTKLPIEVEWQIEDISLQKGIEDHLFRIVQELLSNTLRHSKAKL
                     LEVRLVTMDNLAVMKVVDDGVGFDMDNVRQGSYGLQNMRERVAEFGGTIKIISFPGRG
                     TSVEIKIPLVAKKDVESE"
     gene            complement(4098..4811)
                     /locus_tag="U0280_001813"
     CDS             complement(4098..4811)
                     /locus_tag="U0280_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HEM2271742.1"
                     /translation="MKKMESSVVFVFLIAIIVGVGLEMLFQWELLILFALGIFFIFTS
                     RKASATKKSARNSLFIGIVFIIIAVLLTTTFKVGLVVAGIYAIIHYISRKRAPQLLML
                     KTREPDSKIDRTDKFIRNQWFGNQRILDVVYEWDDINIQTGIGDTILDLGNTVLPTGE
                     SVIMIRSVSGKIRVLVPFDIGICIEHSAIFGNIQYDKESTSIQNNSIKVYSDNYESSA
                     RKVKIMTSVIFGDLEVIRL"
     gene            complement(4946..5818)
                     /locus_tag="U0280_001814"
     CDS             complement(4946..5818)
                     /locus_tag="U0280_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEM2271743.1"
                     /translation="MNNYIGKSQIMTVKEIKDTGWLLEKDGVTVFLSKSNTHETELAV
                     GAEVTVFIFVDYDREIAATTIIPKIQVGHYGWGTVTEVRKHLGVFVDIGIEKDVVVSL
                     DDLPALPHLWPKKEDRVMIALRVDEENRVWGVLAEEEQFRAIAVRAEQDLFNHNVEGT
                     IYRLLKVGSFVFTDDFHIGFIHESERTSEPRMGERVKARVIAVKPDGSLNLSLRGRAH
                     EVLNDDAEMILTYLRSVGGEMPFGDKSDPDAIRAKFGISKAQFKRAIGTLLKARRITQ
                     ENGVVTKITEETSD"
     gene            complement(5899..6594)
                     /locus_tag="U0280_001815"
     CDS             complement(5899..6594)
                     /locus_tag="U0280_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM2271744.1"
                     /translation="MLEVIVQNPRDAYLAEKYGANRMEVVSAISEGGLTPSYGAIKEI
                     VRASKLPAMMMIRPHSFSFVYDKAARIVMERDIELAKEVGVQGIVYGGITENGEIDQA
                     LLEKVIEWKGDLDLTFHRALEATKDIEASYQVLRTYGKDINQLLTSGGTANALDSLPR
                     LKRWIQDSEAQPDSFQILVGSGVKPENIATFQATLNHSDYHVGSAAREANDFSKDILK
                     EKIDILQQQINKD"
     gene            complement(6706..7197)
                     /locus_tag="U0280_001816"
     CDS             complement(6706..7197)
                     /locus_tag="U0280_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2271745.1"
                     /translation="MFKKFLKKSKQEVLFAHVTGQVIALEDVPDPVFNQKMMGEGIAI
                     KPETGTIVAPIDGKIIQLAETKHAFGIRTDMGQEILVHIGLETVSLNGEGFNVLVSVG
                     DKVKVGDPIVEADFDFIEKNAASTVVPMVITNSSEGKYDFDFHAVTKAEAGKTEVITT
                     NLK"
     gene            complement(7312..8214)
                     /locus_tag="U0280_001817"
     CDS             complement(7312..8214)
                     /locus_tag="U0280_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2271746.1"
                     /translation="MLKKLITTAVLAMLIFTLAACGTTLAPYDAKKDLGEQINYTITG
                     IDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKRPIVVTGWTPHW
                     MFTKFDLKFLDDPKNVYGNAENIHTIVRKGLKEDKPSAYQVLDNFFWTAEDMSEVMLE
                     VNDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDEIKLTYVAWDSEIASTNVVAEAL
                     KQVGYKPTIQAMEIQPMWASVATDAADGMVAAWLPNTSGIYYKDYKGKFEDLGPNLKG
                     AKIGLAVPKYMTNINSIEDLKTSK"
     gene            complement(8228..9076)
                     /locus_tag="U0280_001818"
     CDS             complement(8228..9076)
                     /locus_tag="U0280_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     permease"
                     /protein_id="HEM2271747.1"
                     /translation="MPNIPTIPLASWIDKLVDGLTQFEGFFNVITNIIGGIVDAFQWV
                     FDLVPPWLFIILLVFGTFWVNRKGKKWGLIIFEVVGLLLIWNLDFWRDMTQTLTLVLT
                     SSLIALVIGVPLGIWMAKSNIVESIFKPVLDFMQTMPAFVYLIPAVAFFGIGMVPGVV
                     ASVIFAMPPTVRMTNLGIRQVSTELVEAADSFGSTPWQKLWKVQLPMAKSTMMAGINQ
                     SIMLALSMVVIASMIGAMGLGTRVYFAVGRNDAGGGFVAGIAIVIVAIILDRLTQAFN
                     KKAKSE"
     gene            complement(9069..10262)
                     /locus_tag="U0280_001819"
     CDS             complement(9069..10262)
                     /locus_tag="U0280_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2271748.1"
                     /translation="MSKIKVEELTKIFGKKASKASSLLSQGKSKTEILKETGATIGVN
                     KASFSVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTSGKIWLDGKELSSLNKKELLEV
                     RRKSMSMVFQNFGLFPNRTINRNVEYGLEIQGMDKEEREKNAAESLALVGLAGYGEQY
                     PSQLSGGMQQRVGLARALANNPDILLMDEAFSALDPLNRKDMQDQLLDLQDKMKKTII
                     FITHDLDEALRIGDHIMIMRDGSVVQTGSPEEILAHPANEYVEKFIEDVDRSKVYTAS
                     NVMIRPEIVNFEKDGPRVALKRMREAGTSSVFVVKRNRELVGIVHAAEVSKLVKENIT
                     SLETALHRDVPTTGLDTPLAEIMDTISTTTIPIAVTEDGKLKGIIIRGSVLAALSGNE
                     VNVNA"
BASE COUNT         2997 a         2253 c         1682 g         3420 t
ORIGIN      
        1 tcgcaacaaa actgctatct gtaataattt gttcgcgtgt ttttcttaaa tctatcaact
       61 gtttccacaa accttttatt ttgggagcta gagattttgc atcttcgcta tttatatcaa
      121 tttcttttat tttttctaaa actgcctttt cctgagaaat aaacacttga tttaattttt
      181 tgtttttctt gcgtgggtaa agcgcataga caacaaaacc gatcacaaga ccaatcatcg
      241 tatcaaatag tcggtctctt aaaaagacta tcggctctcc gtcgcctttt ccgacaagta
      301 ccattactgt aataacaaca ataaccatcg tgaatttttt agtaaataga tagcttagca
      361 taactgcaag tgctgcgcca atcggaatca taatataatg atggttggga actagcaagt
      421 atacaaaggc tgcaagcagt ccacctacaa tagtaccgat aatccgctca atgcttgatt
      481 tatatgtatc ccccttactc atttgtgcgg taatataaat agcattaaat acgtatgttg
      541 gatacacaat ccaatcaccc ataataggga ataaaatcac tgctatcgta atactaataa
      601 gcactttaat aactcgtgga tcaagagcga aacgttctct catagaaatc tttttcattt
      661 ctgctctctc ccttccacta attctttcat tccaacctta atagctagga agttctcaac
      721 aaattttttc acgtgaaatg aggcaactgg attggcttct ttcgcgttaa tttcatcaga
      781 aactttcacg ttaatctgag caagggcctg tttcgcttct tccgacaaac caactcgtcc
      841 aatgtcctcc attgtttgca tatgaaaaaa aagttgaaga taattaggca gtaacgcttg
      901 atacagctcc acatgacgag gattcgcttt tttactagca ctatattctt taataaacat
      961 ttgtgactga acaaaaatac tatacaatgg ttttgctata aatttaccat tatttttaaa
     1021 tacactttca atttccttgt caaatagtcc taccaattgt ttcataatag tttgaacggt
     1081 tttttcgagt ggtaaatgta catattttac gactaactgc accagtaaaa agaacacaaa
     1141 cacatccatt aacgcgacaa ttatcatggt atagagaggc attggcaaat catctgttcc
     1201 aagaaagtaa agtgctgtcc caatcgcgag tgtcattacc atatatttct gcggcatcaa
     1261 gaaattcacc gccaaaataa caactatcat gacaacatag taaatataca cattgattgg
     1321 gaaaaaatag gtgcttataa tgacaaaaat acacgctaga gtgaatgcta gcgctatttg
     1381 gggaatgact tttctggtaa ttccatatgt aggttgcatt gaaataatcc ctattagtac
     1441 cactataggt aaaaccccgg ccaaatcagg aaaaataact gtatggacca ctacacaaat
     1501 gctcgcataa ataaatgctt gcaacatctg aataagtcct cgagcgccga ttttatcaag
     1561 caaaaatttc ttcatctgtt ccccctcctt ctgtcccttt atgtgaagct ctgtaactat
     1621 aatagaaaat aactggctag atagcaagcg gtaattcgca aacaataaaa aaacctaaga
     1681 atatactaga catgttgaca tatctcttta tattacatag gttttctttt tattgaattt
     1741 tttcttgtag tcgttcaatg tcatcatccg aaccgataac gattagaata tctccttcat
     1801 gtagaacatc attggcttca ggagtaataa tcatttgttt atctttttta ataccgacaa
     1861 tattgacacc aaaagagtta cggaaatcta aatcaactag gctctttcca aggaaacgtg
     1921 gatcagatac agagatttcg actagactat attcatccga taattcaaga taatctagca
     1981 tgtttttcga tacgatgtaa tgcgcaatac gtcgtcccat gtctcgctca ggatggacaa
     2041 cccggtctgc tccgatttta tcaagcaatt tggcatgttt atcattcgtc gcttttgcgg
     2101 taacgtattt tacgcccatt tcttttaaaa taagtgtagt taagatactc gactgaatat
     2161 cctcaccaat cgcaacgata acatgctcaa aattacgaat accaagctgg cgtagcgcgt
     2221 tttcatctgt tgaattagcg ataactgcat gggtcgcaat ggacatatat tcgttgacac
     2281 gttcttcatc cgaatcaatc gcaagtactt ccattccttg ctcgacaagt gaacgacaaa
     2341 tacttccgcc gaatcgccca agaccgatga ctgcaaatcc ttctttcatt tgtacgttac
     2401 ctccttgcta ctttttttct actaagtcat gtttaaatgc atagattgct gcttgcgtac
     2461 gatcttgcac atctaatttc gataaaatat tacttacatg cgtcttcacc gtttttaaag
     2521 tgatgaaaag ttcgtctgcg atttcttggt tggatttacc ttccgcgatt aaaagtaaga
     2581 tttcattttc acgattcgtt aaatcatcat gtaagttttt ctctggttta gcggttagcc
     2641 gttgcatcat tttgccagtt acttctggtt caagaacaga gtctccgccg tatgtagctc
     2701 gaatcgcatc tgcaatttcg ctcgctgttg aagttttaag catataactg ctcgctccag
     2761 cttcaagtgc cgggtatact ttttcatcat caataaaact tgtaacgata attatttttg
     2821 cttctttcca gttttgcata atttcttttg tggcttcgat gccgtccatt tcatccataa
     2881 ctaaatccat taaaataata tctgggcgta gttctagagc catatcagcc ccttcacgac
     2941 cgttctctgc ctcgccaacc acttccatgt catcttgcac agaaagataa gctgagacac
     3001 ctatacgtac catttcatga tcatctacaa gtaatacttt tatcattcgc tttccacgtc
     3061 ctttttcgca acaagtggga tttttatttc tacactagtt cctcttcctg ggaaactaat
     3121 tattttgatg gtgccgccga attcagcaac tcgttctcgc atattttgta atccataaga
     3181 gccttgtcga acattatcca tatcaaaccc aacgccgtca tcaactactt tcatcaccgc
     3241 taaattatcc atcgttacga ggcgtacttc taataattta gctttagaat gtcgtaatgt
     3301 attggaaagt aattcttgaa caatacggaa caaatgatcc tcaatgcctt tttgcaaact
     3361 aatatcctcg atttgccatt ctacttcgat tggcaatttg gttgttaatt cttttaataa
     3421 ttgctcaata ccagttttta atgatttacc ctcgagttgc gttggacgca gatgaagtaa
     3481 aagcgcccgc atctctgatt gggattcatt tacgatagat tcaaccattt ttagttgttt
     3541 ttgcatcgcc ggtgttgcgc ttttttcact ctgttcattc aaagctgata aaagcatcat
     3601 tgctgcaaaa agctgttggc tcactgaatc gtgtaattct ctagcaatcc ggtgtctctc
     3661 ttctgacaaa atagcttctt tcgtttggcc agttgattca gcacggtcgc ttgcaagttt
     3721 ttgtgtcaaa atcgtttgtg ctttcatttt atcacgtaag cggtcgattt gcttgtatac
     3781 ttgctgcact tctaaaaagt tctcgtcttc ttcactcgta atctttttct ccaaatcgcc
     3841 ttgtccgagc agccgaatcg agaagtcaat tgattcaaat ttttgtttaa caaaataccc
     3901 gagcaaaccg cctataatta aaccaatcga aatggctgta agcggaacga aaaccacaaa
     3961 gggaatgtaa aagatttttt gttcgatgag aattttatac caagaacctt cactaaaaaa
     4021 atagtaaccg accgtaccga tggctgtagc aacaagtagt aaccctgagc aaacagccat
     4081 catcagtttc gaaaaactca tagtctaatc acctctaaat ctccgaagat tacagaagtc
     4141 atgattttca cttttcgtgc ggaactttcg taattatctg agtagacctt gatgctatta
     4201 ttttgaatag aggtgctttc tttatcatat tggatgtttc cgaaaattgc ggaatgttca
     4261 atgcaaatac cgatatcaaa tggaacaagt acccgaattt ttcctgagac actacgaatc
     4321 ataatgacac tttcgccagt tggtaaaacc gtgttcccta aatcaagaat cgtatcacca
     4381 atccctgttt gaatattgat gtcatcccat tcatacacta catcaagtat acgctggtta
     4441 ccgaaccact gattacgaat aaacttatcc gtacggtcaa tcttgctgtc aggttctctc
     4501 gttttgagca tcaataattg gggtgcccgc ttcctactaa tgtagtgaat gatcgcataa
     4561 atacctgcaa caacaagccc aactttaaac gtggttgtaa gtaacacggc gataatgata
     4621 aatacgatac caataaataa tgagtttctt gcacttttct ttgttgcgct tgccttcctt
     4681 gatgtaaaga taaaaaatat cccgagtgca aataaaataa gcaactccca ctggaacagc
     4741 atctccaaac caacgccaac aataatcgca attaaaaata caaaaacaac cgagctttcc
     4801 atttttttca agctgacaca cctccttacg ttcctctttt gacaaagtta tttctcgatt
     4861 tttgctactt tgtacatgct gtgttaatta tagcgaggat ttactgattg aaacaaccgc
     4921 gctagttgga acatccccta ctactttagt ccgatgtttc ttccgttatt tttgtaacga
     4981 caccattctc ttgagtgatt cgtcttgctt ttaaaagcgt accaattgca cgcttgaatt
     5041 gggctttact aataccaaat ttggcacgaa tggcatctgg atctgattta tctccgaatg
     5101 gcatttctcc gccaacactt cgcaaataag ttaaaatcat ttccgcgtca tcatttaata
     5161 cttcatgtgc tctaccacga agcgataaat taagagaccc gtccggtttt acagcgataa
     5221 cacgagcctt cacacgttcg cccattcttg gttccgaagt tcgttcactt tcatgtataa
     5281 atccaatatg aaaatcatcc gtaaaaacaa atgaaccgac ttttaataaa cgataaatag
     5341 ttccttcgac attatggtta aatagatctt gttctgcacg aacggcaatt gcgcggaatt
     5401 gttcttcttc tgcaaggacg ccccaaacac gattttcttc atccacacgt agcgcaatca
     5461 tcacgcgatc ttcttttttc ggccacaagt gtggtaatgc aggtaagtca tccaatgata
     5521 ccaccacgtc tttttcaatg ccgatatcga caaaaacacc taaatgttta cgtacttctg
     5581 tcaccgttcc ccagccgtaa tgccctactt gaatttttgg aataatcgtt gttgctgcaa
     5641 tttcgcggtc atagtccaca aaaataaata cggttacttc tgctccaaca gcaagttccg
     5701 tttcatgtgt atttgattta gataaaaaaa cagttactcc gtctttttca aggagccatc
     5761 ctgtatcttt gatttctttc actgtcatta tttggctttt gccaatatag ttattcactt
     5821 tttttccacc ttttccttaa gaatagtctt gtttcattat agcttatcta agcttgtaag
     5881 gctacctgct acgaagaatc aatctttgtt tatttgttgc tgtaaaatat cgattttttc
     5941 ttttaaaatg tctttggaaa aatcattggc ttctctagcc gcacttccta catggtagtc
     6001 gctatgattt aatgtcgctt ggaaggtcgc aatattttct ggtttgacgc cacttccaac
     6061 taaaatttgg aatgaatctg gctgtgcttc gctatcttga atccagcgtt ttaggcgtgg
     6121 caaagagtca agtgcgtttg ctgtaccacc tgaagttaat aattggttga tgtctttccc
     6181 atatgtacgt aaaacttggt aactcgcttc gatatcttta gttgcttcca gcgcccggtg
     6241 gaaagttaag tctaaatcac ctttccattc tattactttt tcgagaagag cttgatcgat
     6301 ttctccattt tctgttatac caccataaac aatcccttgc acaccaacct cttttgcaag
     6361 ctcaatatct cgttccatga ctattctggc tgccttatca tagacaaaag aaaaactatg
     6421 tggtcgaatc atcatcatcg ctggtaactt agaggcacgt acgatttctt taatagcacc
     6481 ataacttgga gtcaaaccgc cttcgcttat tgctgaaact acttccattc tattcgcgcc
     6541 gtatttttcc gctaagtaag cgtctcttgg attttgaact atcacttcta acatattatt
     6601 ccgctccttt taattactaa ttaccttcat tctacccttt tatgacgtgc ttgaatacaa
     6661 aaaaatccat gaaaagaaaa ttaccttttc acggattttg tttcattatt ttaaattagt
     6721 tgtaatgact tcggtttttc ctgcttctgc cttagttaca gcatggaaat caaaatcata
     6781 tttaccttct gagctattcg ttataaccat tggtacaaca gtacttgcag catttttttc
     6841 aataaaatca aagtcagctt ctacaatagg atcgcctact tttactttat ctcctacact
     6901 gactaaaacg ttgaaccctt ctccatttaa ggatacggtt tctaagccga tatgtacaag
     6961 aatttcttgt cccatatccg tacgaatgcc aaaagcatgt tttgtttctg ccaattgaat
     7021 aattttcccg tctattggag cgacaatggt accagtttct ggtttgattg caatgccttc
     7081 tcccatcatt ttttgattaa aaactggatc tggaacatct tctaatgcaa taacttgccc
     7141 agttacgtga gcgaatagta cttcttgttt cgattttttt aaaaattttt taaacatgca
     7201 tcttcctcct agcaatttca tgaatcaact actattttac ccttatagag aaaaaaaggc
     7261 acggagaaac tatcaagcat cacttgattt tcttcatgcc tttttaaacg tttatttgct
     7321 tgtttttaaa tcttcaatgg aattaatgtt tgtcatgtat tttggaactg ctagaccgat
     7381 tttagcacct tttaagtttg gtcctaaatc ttcaaatttt cctttataat ctttgtagta
     7441 gattccggaa gtatttggaa gccatgcagc aaccatacca tcagctgcat ccgtagcaac
     7501 ggacgcccac atcggttgaa tttccattgc ttgaatcgtt ggtttgtagc caacttgttt
     7561 taatgcttct gcgacaacgt ttgtagaggc aatttcagaa tcccaagcta cataagttaa
     7621 cttgatttca tcgccatcta ctttttccac gccatccgtc cattttgcta ctttttctgg
     7681 attattttta atccattttt tagcggcttc ttctggatct acaccgtcat taacttcaag
     7741 cattacttca gacatatctt ccgcagtcca gaagaaatta tctagcactt ggtaagcgga
     7801 aggtttatct tcttttaagc ctttacgtac aatggtgtgg atattttctg cattaccata
     7861 aacatttttg ggatcatcca aaaatttcaa atcaaatttt gtaaacatcc agtgcggggt
     7921 ccaaccagtc acaacaatcg ggcgcttatc tttcatcgct ttttgaagtg tacttgtcat
     7981 cgccgcggta gaacttgttt gtaattgcca attatcatca tctaaatggt aatctttaat
     8041 cgcattttgt gttgcaagca taattcctgc tccagcatca attcctgtga ttgtataatt
     8101 gatttgttcg cctaaatctt ttttcgcgtc ataaggagca agggttgttc cgcaggctgc
     8161 taaagtgaaa ataagcatag ccaaaactgc ggtggtgatt aattttttta gcaatctact
     8221 ctcctcctca ttctgatttc gcttttttat tgaaagcttg tgtcagacgg tctaggatga
     8281 ttgctacgat aacaatcgca atcccagcta caaatccgcc accagcgtcg ttacgtccta
     8341 ctgcgaagta aacacgtgtt ccaagtccca ttgcaccgat cattgaagca attacgacca
     8401 tggaaagtgc taacatgata ctttggttaa tacccgccat catggttgat ttcgccattg
     8461 gtagctgtac tttccaaagt ttttgccaag gtgttgaacc gaacgaatcg gctgcttcta
     8521 caagctctgt tgaaacttgg cgaataccta gattagtcat acgaacagtt ggaggcattg
     8581 cgaaaataac agaagccaca acccctggaa ccattccaat tccgaaaaat gctacggcag
     8641 gaattaagta aacgaaggct ggcatagttt gcataaaatc gagtaccggt ttgaagatac
     8701 tttcaacaat attgcttttc gccatccaaa taccaagtgg aaccccaata acaagcgcaa
     8761 ttaaactact tgtcagaacg agcgttaatg tttgtgtcat atcacgccag aaatctaagt
     8821 tccaaattaa cagtaaaccg acaacttcaa agataattaa accccatttt ttgcctttac
     8881 ggtttaccca aaatgtgcca aatacaagta aaataataaa taaccacggt ggaactaaat
     8941 cgaacaccca ttggaatgca tcaacaatcc cgccaatgat atttgtaatt acattaaaaa
     9001 atccttcaaa ttgcgttaag ccatccacta atttgtcaat ccaactagct aatggaatcg
     9061 ttggaatatt aggcattaac gttcacctcg tttccagaaa gtgcggccag aacggatccg
     9121 cgaatgataa ttccttttaa ttttccatct tcggttacag caatcggaat cgttgttgtc
     9181 gagatagtat ccatgatttc tgcaagtggc gtatctaggc cagttgtagg tacatcacga
     9241 tgtaaagctg tttctagtga agtaatattt tcttttacta gtttagaaac ttccgctgca
     9301 tggacaatac caaccagctc acgattacgt ttaacaacga atacactgga agttccagcc
     9361 tcacgcatcc gtttaagcgc aacacgagga ccatcttttt caaaattaac gatttctgga
     9421 cgtatcatta cgttgctcgc tgtataaact ttggaacggt ctacatcttc aatgaatttt
     9481 tcaacgtatt catttgctgg atgtgccaga atttcttccg gggaacctgt ttgaacgaca
     9541 gagccatcac gcataatcat aatgtggtca ccaatacgta gtgcctcatc caaatcatgg
     9601 gtaataaaga tgattgtttt cttcatttta tcttgtaaat ctagtaattg atcttgcata
     9661 tcttttctgt taagtgggtc aagtgcagag aaagcttcat ccatgagtaa aatatctgga
     9721 ttgttagcaa gtgctctcgc aagccctaca cgttgctgca tcccaccaga aagttgcgaa
     9781 ggatattgtt cgccgtaacc agctaaacca acaagtgcaa gcgattctgc tgcatttttc
     9841 tcgcgctctt ctttgtccat tccttgaatt tcaaggccgt attctacgtt acgattaatc
     9901 gttctattcg gaaataaacc aaagttttgg aagaccatac tcatgctttt tcttctaact
     9961 tccaaaagtt cttttttatt tagactagat agttcttttc cgtcaagcca aatttttccg
    10021 ctcgtaggct caattagacg gtttaaaagt cgtaccaaag tcgacttccc actacctgaa
    10081 agccccataa taacgaaaat ttctccttct tctacgctaa aagatgcttt attaacacca
    10141 atagtcgccc ctgtttcttt caaaatctct gttttcgatt tcccctgaga aagtaaagaa
    10201 gatgctttag aagccttttt tccaaaaatc ttcgttagct cttctacttt aatcttgctc
    10261 aaaataaaat cccctttctt tttttagatt gaattattta ttaggcaaaa attcggccca
    10321 tatcactttt aaaaaaagca ataacattta tc
//
LOCUS       DASDXX010000097        10295 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.097, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000097 DASDXX010000000
VERSION     DASDXX010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10295
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.097"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(62..1288)
                     /locus_tag="U0280_001820"
     CDS             complement(62..1288)
                     /locus_tag="U0280_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine gamma-lyase family protein"
                     /protein_id="HEM2271749.1"
                     /translation="MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSD
                     FHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDE
                     LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK
                     MIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGAD
                     IIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF
                     FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAI
                     QAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYVQGGLT
                     YEHIKIAVTRAIQKIV"
     gene            complement(1281..2504)
                     /gene="hflX"
                     /locus_tag="U0280_001821"
     CDS             complement(1281..2504)
                     /gene="hflX"
                     /locus_tag="U0280_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM2271750.1"
                     /translation="MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELI
                     QKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQVRNISKAVDARIIDRT
                     QLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEM
                     DKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNE
                     TTLQEDKLFATLDPTTRKIRFSGGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVD
                     VLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDHAPATFVPDQPENLLI
                     SALDQEAPDTIKQRMIQLIEKNWAFFTLELSEEKGKELAQIKQQAWVTKLEYIESKQS
                     YHIEGYKPRKELNNE"
     gene            complement(2615..2848)
                     /gene="hfq"
                     /locus_tag="U0280_001822"
     CDS             complement(2615..2848)
                     /gene="hfq"
                     /locus_tag="U0280_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HEM2271751.1"
                     /translation="MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFT
                     VLLDVEGKQQLVFKHAISTFSPQKNVALNPDAE"
     gene            complement(2970..3887)
                     /gene="miaA"
                     /locus_tag="U0280_001823"
     CDS             complement(2970..3887)
                     /gene="miaA"
                     /locus_tag="U0280_001823"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEM2271752.1"
                     /translation="MSKIPVIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGL
                     DIGTAKITPEEMDGIKHYLIDVTNPSEPFTAAKFQIETRKCIETIHQAGRLPIIVGGT
                     GLYIQSVFYDYDFGNVSEDKAYRAELEQLDKTVLWQMLEQKDPESAAQIHENNKRRVI
                     RALEVMHLTGKPFSEYQVNNVLNDRYQPLFLGLDLDRALLYERINQRVNLMFEEGLVT
                     EAKKLYEQHLVDVPAVRGIGYKELFPYFEGKSSLEEAKELIQKNSRHFAKRQLTWFRN
                     RMDIDWIQAGVSSTESEALNKATTFLTAK"
     gene            complement(4014..5690)
                     /locus_tag="U0280_001824"
     CDS             complement(4014..5690)
                     /locus_tag="U0280_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HEM2271753.1"
                     /translation="MVQLFSAFDRETIERNLQEEKFDLVIVGGGITGAGIALDATSRG
                     MSVALVEMGDFASGTSSRSTKLVHGGLRYLQQFEIKEVADLGKERAIVYENGPHVTTP
                     EWMMLPFHKGGNMGKTTASFGIRLYDYLAGVKKNERRKILSAKETLAKNPFVKKDGLK
                     GSGYYVEYRTDDARLTIEVMKKAVELGANAINYTKAEHFLYDDNKQVVGVTVTDRLSG
                     KAYDIKGHRVINAAGPWVDKVRKLDYATNNKHLRLTKGIHLVIDKQKFPMEQAVYFDT
                     PDGRMVFAIPRDKKVYVGTTDTVYDEAVINPKALESDHNYVIKAINYMFPDVHITEKD
                     IESSWAGVRPLIYEEGKDPSEISRKDEVWFSESGLITMAGGKLTGYRKMAEKLLDDVS
                     KTLAKETGKKYKTVQTKHLPISGGDIGGSEQLEAFLSKKAKEGNNRFGWTLEEGREMA
                     KRFGSNIDQLFTYAQEHKEQNETTLPNSLYAELRYSIQHEAVTTPIDFLLRRTGYLLF
                     DMPYLLEWKDAVVDEMAKQFHWSDDVKQTYIEELNIQINDAREPADWHDR"
     gene            complement(5923..6621)
                     /locus_tag="U0280_001825"
     CDS             complement(5923..6621)
                     /locus_tag="U0280_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM2271754.1"
                     /translation="MTEIFAHRGSSGTHPENTLPAMKAAILSGADGIELDIHVLKSGE
                     LIVMHDERVDRTTNGSGFLKDYTLSEVKKLVIGKRLFRKIRVPTLEEIFKLVSGTDMI
                     LNIELKTDVFEYEGIEQKVLALADKFPEVKRMYSSFNPDTLIRLRDLDPTARLALITH
                     ENLDEVLPLHEKIQLDAVHPPVKAMKNPILKQIAARYWTVNKEETITHFIDANVKGMM
                     TDFPEKAVALRNNK"
     gene            6834..8720
                     /gene="oatA"
                     /locus_tag="U0280_001826"
     CDS             6834..8720
                     /gene="oatA"
                     /locus_tag="U0280_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan O-acetyltransferase OatA"
                     /protein_id="HEM2271755.1"
                     /translation="MKRTTRYSRKYVPSIDGLRALAVIAVIAYHLNFSWAKGGFIGVD
                     IFFVLSGYLITNILLTQWEKNQSLQLKQFWIRRFRRLIPAVYVMIVVVVIYAVFFHPE
                     ILKNLRGDAIASFFYVSNWWFIFHNVSYFDSFGLPSPLKNLWSLAIEEQFYLIWPAFL
                     LVFLKWVKNPKLLLKIVIGLGLLSAVWMTILYVPGTDPSRVYYGTDTRAFDLLAGCAL
                     AFVWPFNRLSPVVPRKSKSVLNIAGTISILCFILFTAFVSEYQPFLYRGGLLFVAILG
                     VIMIATISHPASYLSKIFSFKPLRWIGTRSYGIYLWHYPIITLTTPVLEITQPNIWRA
                     ILQVAATFIIAELSFRFIETPIRKNGFINYFKGFKDKNYFIWKNKPVGKWLSIAGVVA
                     VLAIFTLGMSNVLSVNTNAEKQQTSVKTTTSTPDEKKDDKKDKEDKATKEKEDSKETD
                     ANKANGQNQTQVPDNKNKTAATPKTMITQTVAIGDSVMLDIEPYLKEAVPNITIDGLV
                     GRQLRDAITTATGYKKFNSENSSVILELGTNGPFTEEQLNDLLDQFDKATIYLVNTRV
                     PRGWQSDVNKSIANASSRPNVTVVDWYSRSSGQSQYFAPDGVHLTKSGAQAYVAMLTS
                     VMNK"
     gene            complement(8753..>10295)
                     /gene="inlK"
                     /locus_tag="U0280_001827"
     CDS             complement(8753..>10295)
                     /gene="inlK"
                     /locus_tag="U0280_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class 1 internalin InlK"
                     /protein_id="HEM2271756.1"
                     /translation="HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLS
                     GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ
                     FDGVHDYRGIEDFPKLNQLYAFSQTIGGKKLINSDIKGSALTYNAEKQTLYVPFSLMT
                     ERTVNYDGYVPDFVKSTAGSDTYFAMNEKQVNGNRLTITSDGLTVSDVSKADFDNLEK
                     MEYNAKIDLSSQTYNIPDQFKNGGAYNISVPIYDHYFTVDHSVNISADSGKTYIENQP
                     VTEAEFLADIHAKTDDGSTVTSDFADKVDFKTPGTYTVTLQSENNSGLKAAPVQVNVT
                     IKEKTAITADEKITYKVDTSKTEAEFLADIKAKTNDGTAITSDFATVVDLSKPGKYVV
                     TLNAENDLQKALPVQVTVIVEKETPIPDPTPNPTPDPTPNPTPTPDPTPDPSPTPNPV
                     IKPNVNKPEVPSHKIPSLTVNEKKAKAETSKEALPKTGDSLPVAGATVGFLLISLSWF
                     VSRKK"
BASE COUNT         2882 a         2066 c         1726 g         3621 t
ORIGIN      
        1 cgcgattaaa accatcgcgg taaaaattaa aaatattttt ttgcaaataa atgttacttt
       61 tttatactat tttttggatt gctcgagtaa ctgcaatttt gatgtgttca taggtcaaac
      121 cgccttgaac atagagttga taaggttctc taataggtcc atctgctgtt agttccaaac
      181 tcgcgccttg tataaatgtc ccagctgcca ttatcacgtc atcttcataa cctggcatat
      241 atgcaccgat tggcaaaaca tgcgcattaa ccggcgaggc tgcttgaata gcttgcgcaa
      301 atgcaaccat cttctctttg ttatggaagg aaacgctttg aattaaatca gttcttggcg
      361 catcccaaac tgggtcagct tctacaccaa actccgcaag catggcggct gtgaatcgtg
      421 ctcctttaat tgcctgagct gtcacatgag gagctaaaaa gaaaccttga tacatttcta
      481 ataaactata gagtgatgca cctgcttctc tgccaattcc aggtgtagtt aagcgataac
      541 cacataaatc tactaatgct tcttttcctg caatataacc gcctgttttc gctaagccac
      601 caccaggatt tttgattaat gaacccgcga taatatctgc tccaacttct ggcggctcct
      661 gatattccac gaattctccg taacagttat ctacaaaaac aattacttcc ggattgatat
      721 tttttacaaa tacaatcatt tctttaatct tttctattgt aaaagaaggt ctatccgcat
      781 aacctcgtga acgctgaatt ccaatcatct ttgtttttgg cgtcattttt ttcgctattc
      841 ttggaaagtc tacatcacca ttttccagaa gcggcacaga gctataacca atatgaaaat
      901 cttttaaaga gccctgtcct tgctttcgta ttcctacaat ttcttctaac gtatcatagg
      961 gttgaccagt aatataaagt aattcatcat ccgggcgaag gatgccaaat aatacggttg
     1021 aaattgcatg ggttcctgaa attatttgtg gacgaaccag ggccgcctct gtcttaaata
     1081 cagtcgcata cacacgttct aatgtatctc taccttcatc atcataacca tacccagtgg
     1141 aaggatgaaa atgaaaatca ctcactttat tctcttgaaa cgcatctaaa actttcgctt
     1201 gattaaattc agcaatttcg tctgttttat tttgcaaatc atcaatttgt gtttccacct
     1261 tttttcgtat cgcttgaata ttattcatta tttagctcct ttctcggttt gtacccctct
     1321 atgtggtaac tctgtttact ttcaatatat tctagtttcg ttacccacgc ttgttgcttt
     1381 atttgcgcta attcttttcc tttttcttct gaaagttcta gtgtaaagaa agcccaattt
     1441 ttttcaatta attggatcat tcgctgttta atcgtatctg gagcctcttg atctaaagct
     1501 gatataagca aattttctgg ttgatcgggt acaaacgtgg ctggtgcatg atccatttta
     1561 ttgtaaatga ctagtgtcgg cagatggttc atttcaagtt cctctaataa agaaattacc
     1621 gttgtttcgt gttgcaaata gtctggattt gatgcatcaa ctacatgaat taacacatct
     1681 acattggcag tttcctctaa agtagagcga aaagctgcaa ttaaagtcgt tggcaaatct
     1741 tgaataaaac caactgtatc tgtcaaaagc gcttgaaatc cacccgaaaa gcgaattttt
     1801 cgtgtggttg ggtcaagtgt tgcaaataat ttatcttctt gtaatgttgt ttcattcgtt
     1861 agacggttga aaatagttga tttccctgca tttgtgtaac caattaaacc aaaccgaaaa
     1921 acggattgta tatttcttcg ttcaatgatt cgcttgcggt gttgttcaac atgtgttaat
     1981 tgcgctttga tatcatgcat tttttcgcga atatggcgtt tgtccatttc tagtttggat
     2041 tcaccaggcc ctcttgaacc aatacctcct ccaagttttg ataaggaaac accttgtccg
     2101 ctaagtcttg gtaacagata tttatattgc gcgtatgcga cttgcagttt tccttctttg
     2161 gattttgcgc gcatggcaaa tatgtctaag attaactgtg ttcggtcaat tattcgcgca
     2221 tcaaccgcct tagaaatatt gcgcacttga gttgcactaa gttcactatt aaatataaca
     2281 acgtccgcct catgcatttc cactaaagta gcaagctctt ccagtttacc ggaaccaatg
     2341 aacgatgctt gatttactcg ttctaatttt tgaattaatt catctactac ttcaccgttt
     2401 gccgttttag ctaagctatg tagttcattc atggaattcc agaaagcttc ttctgtttta
     2461 tttggcaaaa tcacgcctac aagtattatt ttttctcttt ccacatgcat ttctcccttt
     2521 ttcagacaag actaatcgta gcatattttc tgcataaaaa aaagacatga aacatcgcaa
     2581 aaaaagcgag ttccctgcct ttcaagtaaa gtacttattc cgcatcagga tttaaagcga
     2641 cattcttctg cggggagaaa gttgaaattg cgtgtttaaa tacaagctgt tgttttcctt
     2701 cgacatctag tagtacggta aaattgtcaa aacttacaac acgtcctctt aactgaaaac
     2761 catttgttaa aaatacagtt gcaagaattt tttccttacg caattgattt aagtaatagt
     2821 cctgtaaccc ttgtccacct tgtttcataa tttccctctc caatctctat cttatactaa
     2881 aaatttccca aaccccaatg aagttccatt gtgcaattgg ttggctaatt tcaaataccc
     2941 tttatttctt cttaccaaac agaaaagcgt tatttagctg ttaaaaaggt tgttgcttta
     3001 tttaatgctt ctgattctgt actgctaaca cccgcctgaa tccagtcaat atccattcta
     3061 tttctaaacc aggttaactg tcttttcgcg aaatgccttg agttcttttg aattaattct
     3121 tttgcttctt ctagtgagct ctttccttca aaataaggaa ataattcttt gtagccgatg
     3181 ccgcgaactg ctggaacatc cactaaatgt tgctcatata atttttttgc ttctgtcact
     3241 aaaccttctt caaacattaa attcactcgc tgattaattc tttcgtaaag taacgctctg
     3301 tccaaatcaa gtcctagaaa gagtggttgg tatctatcat taagtacatt attcacttga
     3361 tactctgaga aaggctttcc tgttagatgc atcacttcta atgctctaat cactcggcgc
     3421 ttattgtttt cgtgtatctg tgctgcgctt tctggatctt tttgttcgag catttgccac
     3481 aatacagttt tgtctagttg ttctaattcc gctcgataag ccttatcttc gcttacgtta
     3541 ccaaaatcat aatcatagaa aacagattga atataaagtc ctgttccacc aacaataatt
     3601 ggtagcctac cagcttgatg tattgtttct atacattttc ttgtttctat ttggaatttc
     3661 gctgcagtga atggttcgga aggattcgtc acatcaataa gataatgttt gattccatcc
     3721 atttcttctg gtgtgatttt tgctgtaccg atatctaatc cacgataaac ttgcatagag
     3781 tcaccactga tgatttctcc gtccaatttt ttcgctagtt caatacttaa acttgtcttt
     3841 ccgacagcgg ttgggccaac gatgacgatg acaggaatct tgctcaaaaa aaaacctcct
     3901 tttcacctgt aatcaatgta ccatgaaaaa ggtttcttga aaatagtgaa aatgattttt
     3961 tccagaaaaa aagcgcaaat ccttgaaaga tttacgctct tttcgaattt taattatcta
     4021 tcgtgccaat cagctggttc tctagcatca ttaatttgaa tatttaattc ctcgatatag
     4081 gtttgtttta catcgtcgct ccagtggaat tgtttagcca tttcatccac aacagcgtct
     4141 ttccattcaa gtaagtatgg catatcgaaa agcaagtagc cagtgcgacg taataagaaa
     4201 tcgattggcg ttgtcactgc ttcgtgttga atcgagtagc gtagttcagc atacaaactg
     4261 tttggtaaag tggtttcgtt ttgttcttta tgttcctgtg cataagtaaa taattgatcg
     4321 atattactac cgaaacgttt agccatctca cgaccttctt ctaaagtcca gccgaaacga
     4381 ttattacctt ctttcgcttt tttagatagg aaagcttcta attgttctga gccaccaatg
     4441 tcaccaccag aaattggtaa atgttttgtt tgaactgttt tgtacttttt accagtttct
     4501 ttcgctaatg tttttgaaac gtcatctaat aatttttcgg ccatttttct gtaaccagtg
     4561 agtttaccac ctgccatcgt gattaagcca ctttcagaaa accaaacttc atctttacgt
     4621 gaaatttcag atggatcttt tccttcttca tagataagtg gacgaacccc agcccaactt
     4681 gattcaatat ctttttcggt aatatgcaca tcagggaaca tataattaat cgccttaatc
     4741 acataattat gatcagattc aagtgctttt ggattaatta ctgcttcgtc gtacactgta
     4801 tccgtcgttc caacatacac ttttttatcg cgcggaatag caaagaccat ccggccatca
     4861 ggtgtatcaa agtataccgc ttgttccatc gggaattttt gtttatcaat aaccaaatga
     4921 attccttttg ttaagcgtaa atgtttgttg tttgttgcat aatctaattt tcttacttta
     4981 tctacccaag gaccagcagc attaataaca cgatgtcctt taatatcgta tgctttgccc
     5041 gacaaacgat ctgttacggt tacaccaact acttgtttat tgtcatcata taagaaatgc
     5101 tccgcttttg tatagttaat agcattcgct ccgagttcta ctgctttttt cataacttct
     5161 attgttaaac gcgcatcatc cgtgcggtat tccacgtagt aaccagaacc ttttaaaccg
     5221 tcttttttca cgaatggatt tttggctaat gtttcttttg cgcttaaaat tttacgtcgt
     5281 tcatttttct ttacccctgc taaatagtca tataaacgaa taccaaatga agcggtagtt
     5341 ttacccatat tgccgccttt atggaatggg agcatcatcc attcaggagt cgttacgtgt
     5401 ggtccatttt cgtagactat cgcacgttct tttcctaaat ctgctacttc tttaatttca
     5461 aattgttgta aatatcttaa tccaccgtgg actaattttg ttgaacggct cgatgttccg
     5521 ctcgcgaaat cacccatttc aacaagtgcg acactcatac ctcgtgaagt ggcatctaaa
     5581 gcgattcctg cccctgtaat cccgccaccg acgatgacta aatcaaattt ttcctcttga
     5641 agatttcttt cgattgtttc tctgtcaaac gctgaaaata attgtaccat tttgtttgcc
     5701 cccttcaaat tgtttaccgt ctgaattatg ccttcttggt tacttttcca cttttcaatc
     5761 taactgaaac gctttaagtt taaaaacaaa aaaagagact gcaaagtaag acgattgcgc
     5821 tcgccttttg cagtctctcc gaatctcaga caataatatt tattaactta ctatgattat
     5881 atcttttaac gatttataat gaaagcgttt tgctcatgga ggttatttat tatttcttag
     5941 tgccactgcc ttttcaggaa aatcagtcat cattccttta acattggcat ctataaaatg
     6001 cgtgatagtt tcctccttat tcaccgtcca atagcgtgct gcgatttgct ttaaaatcgg
     6061 gtttttcatt gcttttactg gtggatgcac tgcatcaagc tgaatttttt catgtaatgg
     6121 caatacttca tctaagtttt catgtgtaat taaagctagt ctggcagtag gatctaaatc
     6181 tctcagccga atgagagtat ctgggttaaa ggaagaatac attcgtttga cttcgggaaa
     6241 tttatccgct aatgctaaaa ctttttgttc gattccttca tattcaaaga catccgtttt
     6301 caactcaatg tttagtatca tatctgtgcc actcaccaac ttaaaaattt cttccaaagt
     6361 tggcacacgg attttacgga aaagccgttt accaatcact aattttttca cttctgaaag
     6421 tgtgtaatct tttaaaaagc cagacccatt tgtagtccta tcgacgcgtt catcgtgcat
     6481 gacgattaat tcgccacttt tcaaaacatg aatgtctaac tcgataccat ccgcaccgga
     6541 taaaatcgct gctttcatag ctggtagtgt attttctgga tgcgtcccac tactgcctcg
     6601 atgggcaaaa atttccgtca aaatgcttcc ccccaaacta tttacttata tttactataa
     6661 caaaaataag caaatatact caaattttta aaatctatca attaattcag cattttaaat
     6721 tacttcttga tttatgtgtg gtattatagt atggagctaa aaacagatct ctttactatc
     6781 tctgtctagg tttacacaca catatttact tatcacaaat aggagatgtt attttgaaaa
     6841 ggactactcg ctacagtaga aaatatgttc cgagtattga tggacttcga gcactcgcag
     6901 ttattgctgt aatcgcctac cacttgaatt ttagctgggc taaaggtgga ttcatcggcg
     6961 tagacatatt tttcgtctta tctggttact taattacaaa tattttatta acacaatggg
     7021 aaaaaaatca atcacttcaa ttaaagcaat tttggattag acgttttcgg cgactcattc
     7081 ctgctgttta tgtaatgatt gtagtcgttg tcatctatgc cgtcttcttc catccagaaa
     7141 ttttaaaaaa cttacgcggc gatgcaattg cttctttctt ttatgtaagt aactggtggt
     7201 ttattttcca caatgtttct tattttgatt catttggact tccatcacca cttaaaaact
     7261 tatggtcact agccattgaa gaacaatttt atttaatatg gcccgctttt ttactggtat
     7321 ttctcaaatg ggtaaaaaat ccaaaactat tattaaaaat cgtcattggc cttggccttc
     7381 tctccgcagt ttggatgacg attttgtacg ttcctgggac agatccaagt cgtgtttatt
     7441 acggtacgga tacgagagca tttgatttgc tagcaggttg tgcacttgca tttgtctggc
     7501 ctttcaatcg ccttagtcct gtagttccaa ggaaaagtaa gtcagttctc aatattgcag
     7561 gaacaatcag tattttatgt tttattctat tcacagcttt tgtaagtgaa tatcaacctt
     7621 tcttatatcg cggtggcttg ttattcgttg caattctcgg cgttatcatg attgcaacta
     7681 tctcacatcc cgcctcttat ctaagcaaga ttttcagttt taaaccactt agatggattg
     7741 gaacaaggtc ttacggtatt tacttatggc attatccaat tataacgttg acaacacctg
     7801 tactagaaat tactcaacct aatatatggc gagctatcct acaagttgcc gctactttta
     7861 ttattgctga gttatcgttc cgctttattg aaactcccat tcgaaaaaat ggttttatca
     7921 attattttaa aggcttcaaa gataaaaact atttcatttg gaaaaataaa cctgttggta
     7981 aatggttgag tatcgctggt gttgttgctg ttttagcaat atttacactt ggtatgtcaa
     8041 acgttctttc cgtcaatacc aatgcagaaa aacaacaaac gtctgttaaa acaaccacct
     8101 ctacaccaga cgagaagaaa gatgataaaa aagacaaaga agataaagct actaaagaaa
     8161 aagaagactc caaagaaacg gacgcaaata aagctaacgg acaaaaccaa acacaagtgc
     8221 cagacaacaa aaataaaaca gccgccacgc caaaaacaat gattacacaa acagtggcga
     8281 ttggtgattc agtcatgctt gatattgaac catacttgaa agaagccgtt cctaatatca
     8341 caattgatgg tctagttgga cgtcaattaa gagatgctat tacaaccgct actggctata
     8401 agaaattcaa cagcgaaaat agctccgtta ttcttgaact tggtacaaat ggtcccttca
     8461 cagaagagca attaaatgat ttattagatc aatttgacaa agcaacgatt tatttagtta
     8521 atacgcgggt tcctcgtggt tggcagtctg atgtaaataa aagtattgcc aatgcttcat
     8581 cacgacctaa tgtaactgtt gttgattggt attcaagatc tagtggtcaa tctcagtact
     8641 ttgctccaga tggtgttcat ttaactaaat ctggtgctca agcttatgtc gccatgttaa
     8701 ctagcgtcat gaataaataa ctatccgccc ttaattgggc ggatagttat ttttattttt
     8761 tcctagaaac aaaccagctt aagctaatta gtaaaaatcc tactgttgca cctgctacag
     8821 gcaaggaatc ccctgtttta ggtaaagcct ctttgcttgt ttctgcttta gcttttttct
     8881 catttacagt taaagatgga attttgtgac ttggcacttc tggtttattg acgtttggtt
     8941 tgataaccgg attaggtgtt gggcttgggt ccggtgttgg atctggtgtt ggtgttggat
     9001 ttggcgtcgg atctggtgtt ggatttggcg ttgggtctgg tattggtgtt tctttttcaa
     9061 caataaccgt cacttgcact ggcaaagctt tttgtaaatc attttctgcg tttagtgtaa
     9121 cgacatattt tcctggtttg gaaagatcaa caacagtcgc aaaatcactt gtaatcgctg
     9181 ttccatcatt tgttttcgct ttgatatctg ctaaaaattc tgcttctgtt ttagatgtat
     9241 ccaccttata agtgattttt tcatctgccg taatcgctgt cttctcttta attgttacgt
     9301 ttacttgaac tggggctgcc tttaatccag aattattctc agattgtaaa gtaactgtgt
     9361 acgttccagg agtcttgaaa tctactttat cagcgaaatc acttgtaaca gttgatccgt
     9421 catctgtttt tgcatgaata tctgctaaaa attctgcttc tgtcactggt tgattttcta
     9481 tatatgtttt tccactgtca gctgagatgt ttacagaatg gtcgacagtg aagtaatgat
     9541 catagatagg tacagatata ttgtacgccc caccattttt aaactgatca ggaatattat
     9601 aagtttgaga actcaaatcg attttcgcgt tgtactccat tttttcaaga ttatcaaaat
     9661 ctgctttact tacatcactt actgttaagc catcactcgt aattgttagg cgattgccat
     9721 ttacttgttt ctcattcatt gcaaagtaag tgtcgctgcc tgcagttgat tttacgaaat
     9781 ctggtacata gccatcataa ttaactgttc gttccgtcat caagctgaat gggacgtata
     9841 atgtttgctt ttctgcatta taagttaatg cactaccttt aatatcggag ttaattagtt
     9901 ttttaccccc tatagtttgg gaaaatgcat acagttgatt caatttaggg aaatcttcta
     9961 tacctcgata atcatgtact ccgtcaaatt gaatatttaa gctcttaagt tctggcaatg
    10021 ttttaagtgg catgatatcc gttattgcac cattataact aaggtcaata ctatttactt
    10081 taggaagtgt gtttatttta gttaaaatag aatcatcatg tgcactgtgc gaaatatcca
    10141 gtagagttaa actcgtcagc ccacttaaat ttggaatttt atcggatgta acatcttttc
    10201 ccataattct taatcgttca agattactca acccgcttat tggattatag tttgttgcat
    10261 gaatattatt tatggttaaa tcttttatat tatgg
//
LOCUS       DASDXX010000098        10272 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.098, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000098 DASDXX010000000
VERSION     DASDXX010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10272
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.098"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..331)
                     /locus_tag="U0280_001828"
     CDS             complement(<1..331)
                     /locus_tag="U0280_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM2271757.1"
                     /translation="MASLIDIKQRITSTRKTSQITKAMQMVSAAKLGRAESNARSYEP
                     YVSKIKDVVTHVASTGNSSDHPMLVSRPVHRTGYIVLTSDTGLAGSYNSSVIKEVFQE
                     INKKHTSS"
     gene            complement(369..1883)
                     /locus_tag="U0280_001829"
     CDS             complement(369..1883)
                     /locus_tag="U0280_001829"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM2271758.1"
                     /translation="MSIKAEEISSIIKQQIENYQSELKVSDVGTVTYIGDGIARAHGL
                     DNAMAGELLEFSNGVMGMAQNLETNDVGIIILGPYTEIREGDEVRRTGKIMEVPVGEA
                     LIGRVVNSLGQPVDGLGPIETTGTRPIEAVAPGVMQRQSVNEPLQTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTSVAIDTILNQADQDMICIYVAIGQKESTVRNAVETLRHHGAL
                     DYTIVVTAAASQPAPLLYLAPYAGVAMAEEFMYNGKHVLVVYDDLSKQAAAYRELSLL
                     LRRPPGREAYPGDVFYLHSRLLERAAKLNDSLGGGSITALPFVETQAGDISAYIPTNV
                     ISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGSAQIKAMKTVAGTLRLDLAAYREL
                     ESFSQFGSDLDAATRAKLERGKRTVEVLKQDLHKPLKVEKQVLILYALVHKYLDDVPV
                     HDVLRFESEMNTWFDHNHPELLEEIRTTKKLPDEAKLEAALKEFKNTFVPSEEK"
     gene            complement(1910..2449)
                     /locus_tag="U0280_001830"
     CDS             complement(1910..2449)
                     /locus_tag="U0280_001830"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM2271759.1"
                     /translation="MSKDLEVAGRYANALFQVAQDKDLVDVFSEELTELKAALKANED
                     FVKLLENPTFTTEQKKNLASAVFEKINPTLRDFIYLLIDRSREDYLSVIADVYQKRVN
                     DLNGVADADVYSVVPLSEQELTALSRVFATKMNKTKLNIQNHIDKSLLGGVKVVIGTR
                     IYDDSLKTKLKDMERQIKA"
     gene            complement(2446..2958)
                     /gene="atpF"
                     /locus_tag="U0280_001831"
     CDS             complement(2446..2958)
                     /gene="atpF"
                     /locus_tag="U0280_001831"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEM2271760.1"
                     /translation="MLQPHLVIGSAFTFGDAFFTLFAFAILLVLIRIYAWKPLMGVMK
                     EREEHIGSEIDAAEESRAQAEQLLAEQKSVLQQARVESQTMIENAKQLGEKEREEIVK
                     TARRESERIKEEAKSDIAREKEDAISALREQVGSLSVLIASKVIEKNLDEKEQSNLIQ
                     DYIERLGDDK"
     gene            complement(3046..3264)
                     /gene="atpE"
                     /locus_tag="U0280_001832"
     CDS             complement(3046..3264)
                     /gene="atpE"
                     /locus_tag="U0280_001832"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEM2271761.1"
                     /translation="MSLGVIAAAIAVGLGALGAGIGNGLIVSKTVEGVARQPEARSML
                     QTIMFIGIGLVEALPIIAVVIAFMVLNK"
     gene            complement(3336..4052)
                     /gene="atpB"
                     /locus_tag="U0280_001833"
     CDS             complement(3336..4052)
                     /gene="atpB"
                     /locus_tag="U0280_001833"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEM2271762.1"
                     /translation="MEEEFPTISLLGIDFNLSNILMITVTCVIVLLIAIICTRNLQRR
                     PTGKQNFIEWVMDFVRGIINSNMDWKTGGRFHVLGITLLMFIFVANMLGLPFQIAIND
                     EVWWRSPTADPIVTLTLAIMVLGLTHYYGIKMRGFKHYFVGTYFSPMKFLFPLKLVEE
                     FANTLTLGLRLYGNIFAGEVLLTIIATQLAHMNIFVGVLAIIPALLWQGFSIFIGAIQ
                     AYIFTMLTMVYMSHKVSDEH"
     gene            complement(4059..4457)
                     /locus_tag="U0280_001834"
     CDS             complement(4059..4457)
                     /locus_tag="U0280_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HEM2271763.1"
                     /translation="MLESLIGMYHRHQKYMVLFIAVCLCGWFLTPYIHIFLGLKLGLI
                     VGWFNYWLLMRRTQSMTRALAENRSFYGMGMPFRMGSVLFATIIATQLPEFFHVYSMV
                     IGLGLAYAIIFLDFFVYSMYRRKKFLKREG"
     gene            complement(4651..4818)
                     /locus_tag="U0280_001835"
     CDS             complement(4651..4818)
                     /locus_tag="U0280_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271764.1"
                     /translation="MTEVLVAVKWTKIILAWQSKKQIDFEIKKISKIIGYSFMDGSDC
                     GTISNRCTYNL"
     gene            complement(5288..6427)
                     /gene="wecB"
                     /locus_tag="U0280_001836"
     CDS             complement(5288..6427)
                     /gene="wecB"
                     /locus_tag="U0280_001836"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEM2271765.1"
                     /translation="MAKIKVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHR
                     EMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTT
                     SFAAGLATFYQQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADMHFSPTKQAKENL
                     LAEGKDPGTIFVTGNTAIDALRTTVQKDYHHPILENLGDNRLILMTAHRRENLGEPMQ
                     GMFEAVREIVESREDVELVYPMHLNPAVREKATKILGGHERIHLIEPLDAIDFHNFLR
                     KSYLVFTDSGGVQEEAPGMGVPVLVLRDTTERPEGIEAGTLKLIGTNKENLIKEALNL
                     LDNKENHDKMAHAVNPYGDGFAANRILAAIKSHFEETGRPEDFIV"
     gene            complement(6545..7174)
                     /gene="upp"
                     /locus_tag="U0280_001837"
     CDS             complement(6545..7174)
                     /gene="upp"
                     /locus_tag="U0280_001837"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEM2271766.1"
                     /translation="MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEI
                     TRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGL
                     YRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGARNMKFMCL
                     VAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK"
     gene            complement(7312..8553)
                     /locus_tag="U0280_001838"
     CDS             complement(7312..8553)
                     /locus_tag="U0280_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEM2271767.1"
                     /translation="MVYLQKQDKEVFDAIKLELGRQRANIELIASENFVSEQVMEAMG
                     SVLTNKYAEGYPGKRYYGGCEFVDIVEDLARDRAKKLFGAEYANVQPHSGAQANMAVY
                     HTVLEPGDTVLGMNLSHGGHLTHGSPVNFSGVLYNFVEYGVREDTKEIDYDIVREAAL
                     KHKPKMIVAGASAYPRKIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHQNPVPYAD
                     FTTTTTHKTLRGPRGGMILAKAEWEQKLNKSIFPGIQGGPLMHVIAAKAVAFGEALQP
                     EFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEV
                     GITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLHNLENEEV
                     LADVKARVATLTNEYPLYPSL"
     gene            complement(8689..9096)
                     /locus_tag="U0280_001839"
     CDS             complement(8689..9096)
                     /locus_tag="U0280_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight protein arginine
                     phosphatase"
                     /protein_id="HEM2271768.1"
                     /translation="MKVLFVCTGNTCRSPLAEKILQNLRPDLDVRSAGTRALDGDAIS
                     ENSRQILAQMNLPTTHQAKKVKKADIDWADQIYVMTQNHQAELKSLFPKASDKIQLIS
                     EDKTDIPDPYGGSIEQYEITYYELKSAISERFL"
     gene            complement(9093..10130)
                     /locus_tag="U0280_001840"
     CDS             complement(9093..10130)
                     /locus_tag="U0280_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEM2271769.1"
                     /translation="MQTIHWNINNQQSNQVIFQEAAKLLRSGECVAFPTETVYGLGAD
                     ATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDPFVASYPVKAIQLMEKFWPGPLTVI
                     LPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIDAANIPVAAPSANRSGKPSPTTASH
                     VIEDLDGKIAGIIDGGATGVGLESTVIDCSLDIPVILRPGGVTKEQIEQIIGPVDIAT
                     NNTKETEKPKAPGMKYTHYAPKAPVYLIEGSIQFWQSEINKAEAANKKLGILATKELI
                     NQLNTSGTIEITGSINALDEIATSLYKGLRAFDHADVDVIFAEVYPETELGAAIMNRL
                     EKAAGNRRIRE"
BASE COUNT         2974 a         2169 c         1830 g         3299 t
ORIGIN      
        1 cacttgacgt atgcttttta ttaatttctt gaaatacttc tttgattaca gaactattgt
       61 aagaacctgc aagtccagta tcagaagtaa gtacgatata accagtacgg tgaacaggtc
      121 tagatacaag cattggatga tcactactgt taccagtgct agcaacatgt gttactacgt
      181 ctttaatttt agaaacgtaa ggctcatatg aacgagcgtt tgattctgca cgacctagtt
      241 ttgctgctga aaccatttgc attgcttttg taatttgact tgttttacgt gtagaagtta
      301 ttcgttgttt aatatcgatt aaagatgcca aagattttca ccacctttga atttattccg
      361 agtctaaatt atttttcttc agaaggaaca aatgtatttt taaattcttt caatgctgct
      421 tcaagtttcg cttcgtcagg aagttttttc gttgtacgaa tttcttccaa aagctctggg
      481 tgattatgat caaaccatgt attcatttcg gactcaaaac gcagtacatc atgaactggt
      541 acatcatcca gatatttatg aacaagtgca taaagaatca atacttgttt ttcaactttc
      601 aaaggtttgt gcaaatcttg ttttagaact tctactgtac gtttaccacg ttctagtttc
      661 gcacgagtag ctgcatctag gtcagagccg aattgtgaga aggattctag ctcacggtaa
      721 gcggcaaggt ctagacgaag tgttccggca acagttttca ttgctttaat ttgcgctgat
      781 ccacctacac gagatacaga aagaccggca ttgatcgctg gacgtactcc ggagaagaat
      841 aaatcagatt gcaagaagat ttgtccgtct gtaatcgaga taacgtttgt aggaatataa
      901 gcagagatat ctccggcttg tgtttctacg aatggaagag ccgtaatgga tccgccacct
      961 aagctatcat ttaattttgc agcacgttca agtaaacggg agtgcaagta gaaaacatcc
     1021 cctggatatg cttcacggcc tggaggacga cgaagtaata gagacagctc acgataagcg
     1081 gctgcttgtt tggataaatc atcatatacg actaaaacgt gtttgccgtt gtacatgaat
     1141 tcttctgcca ttgcaacacc agcataagga gccaagtata gaagtggcgc tggttgagat
     1201 gctgctgcag ttacgacgat tgtgtaatct aatgcgccgt gatgacgtaa tgtttctacg
     1261 gcattacgta cagtagattc tttttgaccg atagcaacat aaatacaaat catgtcttgg
     1321 tcagcttggt ttagaatagt atcaattgct acagatgttt taccagtttg gcggtcaccg
     1381 atgattaact cacgttgacc acgaccaatt ggaacaagtg catcaatcgc tttaatacct
     1441 gtttgtaatg gttcatttac tgattgacgt tgcataacac caggtgctac tgcttcaatc
     1501 ggacgagttc cagttgtttc aataggtcct aaaccatcaa ctggttgacc taatgagtta
     1561 actacacgcc caataagcgc ttcgccaaca ggaacttcca tgattttacc ggtacgacga
     1621 acttcatcgc cttcacggat ttcagtgtaa ggacctagaa taatgatacc aacatcattt
     1681 gtttctaagt tttgggccat acccattaca ccatttgaga actctaacaa ttcaccagcc
     1741 attgcattat cgagtccatg agcacgcgca ataccgtcac caatgtaggt aaccgtacca
     1801 acatcactca cttttagttc agattgataa ttttcaatct gctgttttat gattgagctg
     1861 atctcttcag ccttaatgct cattgatttc acccctcgtt aaacggaaac taggctttaa
     1921 tttgccgttc catgtccttt aatttcgttt ttagactgtc atcatatata cgggttccaa
     1981 taaccacttt gactccacca agaagggatt tatcaatgtg attttgaatg tttaactttg
     2041 ttttgttcat tttcgtagca aatactctcg agagcgccgt aagttcttgt tcggaaagtg
     2101 gaacaacaga ataaacatct gcatccgcaa ctccattcaa gtcgtttacg cgtttttggt
     2161 aaacgtccgc aataacagaa agataatctt ctctgctacg gtcaattaaa agataaataa
     2221 aatctcttaa tgtcggattg attttttcaa aaacagcgct ggcaagattt ttcttttgct
     2281 cggtcgtgaa agtaggattt tcaagtagtt ttacaaaatc ttcattagct tttaaggccg
     2341 cttttaattc agttagttct tctgaaaaaa cgtcgactaa atctttatct tgggctactt
     2401 gaaaaagcgc attggcatag cgacctgcaa cttccaaatc tttactcatt tgtcatcccc
     2461 tagcctttcg atataatctt ggataaggtt agattgttct ttttcatcca gatttttttc
     2521 gatgactttc gatgcaataa gaacagataa ggaaccgact tgttcgcgaa gagcagaaat
     2581 agcatcttct ttttcacgtg caatatcgga ttttgcttct tcttttatac gttctgattc
     2641 acgtctagca gttttgacaa tttcttcgcg ttctttttca ccaagctgtt ttgcattctc
     2701 aatcattgtt tgagattcca cacgagcttg ttgtaaaaca cttttttgtt cagcaagtaa
     2761 ttgttctgct tgagcacggc tttcttccgc cgcatcaatt tcagaaccaa tatgctcttc
     2821 acgctctttc ataactccca taagaggttt ccaagcataa attcggatta aaactagcaa
     2881 aatcgcgaaa gcaaaaagtg tgaagaatgc atcaccaaac gtaaatgcgg aaccaattac
     2941 taaatgtggt tgtaacacgc cagtttcact cctttctata cattcgcttg aattattcgt
     3001 tcaaaacgaa agagatgagg ttttatttcc tcaacttcct tcaaattatt tattaagaac
     3061 catgaacgca ataactacag cgatgatagg aagggcctca acaagaccga taccaatgaa
     3121 catgattgtt tgtagcatag aacgcgcttc tggttgacgc gcaacaccct cgacagtttt
     3181 tgatacgata agaccgttac caatacccgc acctaatgca cctaatccaa cagcgatagc
     3241 agctgcaata acacctaaag acatataatt atcctcctaa tttttctaaa tattattttt
     3301 tattactttt ataaatgact tatttgaaag ttagtttaat gttcgtcact taccttatgc
     3361 gacatataaa ccatggtcag catagtgaaa atgtacgctt gaattgcccc aatgaaaatt
     3421 gagaatcctt gccatagtaa cgcaggaatt attgctagca cacctacaaa tatgttcata
     3481 tgagcgagtt gtgttgcaat gatggttaac aaaacttcgc cggcgaaaat attaccgtaa
     3541 agacgtaaac caagcgttaa agtattagca aattcttcta ctaatttaag tgggaataaa
     3601 aatttcattg gactaaagta agtaccaaca aaatagtgct tgaaaccacg cattttaata
     3661 ccatagtaat gcgttaagcc aagaaccatt atcgcaagtg ttaatgtgac aattggatcc
     3721 gctgtaggtg aacgccacca tacttcatcg ttaatcgcga tttgaaatgg cagtcctagc
     3781 atattagcta cgaaaataaa cattagtagc gtaataccaa gtacatggaa tctcccaccg
     3841 gttttccaat ccatattact attaataata cctctgacaa aatccataac ccattcaatg
     3901 aagttctgct ttccggtagg tcggcgttgc agatttctgg tacagataat ggctattaga
     3961 agaacgatga cacaagtcac agtaatcatc aaaatattag atagattaaa gtcgatccct
     4021 aataggctta tcgttggaaa ttcctcttcc aattaggttc acccctctct ttttaaaaac
     4081 ttttttctgc ggtacatgga atacacaaaa aaatctagaa aaataattgc atatgcaagc
     4141 ccaagtccga ttaccatgct ataaacatga aaaaattccg gcagttgcgt cgctataata
     4201 gtagcaaata acacgctccc cattctaaat ggcattccca taccataaaa agaacgattt
     4261 tcagccaaag ctctagtcat tgattgtgta cgcctcatta atagccagta gttaaaccag
     4321 ccgacgatta aacccaactt aagtcccaag aaaatatgta tatatggggt taaaaaccat
     4381 ccacaaagac aaacagcaat aaaaagaacc atatactttt gatgacgatg atacatgcca
     4441 attagcgatt ctaacattcg gggcgcaatc ctttcttttt caaaagattt ttctttccag
     4501 atgaccattt tgaaatctca gggagtaagt ttggtttgtg aaaacaagca cattttcccc
     4561 aattcatccc aatcccaaac acacatgaaa gccttatcag cgtgtcagtt cttagcatac
     4621 aacagccaaa agagaaaagt caatacactt tcacaaattg taagtacatc tattactaat
     4681 agtaccacaa tcggacccat ccataaaaga atagcctatt atttttgaga tttttttgat
     4741 ttcaaaatct atctgtttct tagattgcca cgccagaatt atttttgtcc atttaacagc
     4801 aaccaacacc tccgtaatcg ttgagaaaac ctatctcctg ttcgtgtgat gtttcacaaa
     4861 aaaggcgata aaaactctct ttcgcacaaa taaaaaaact tctaccacta ttggtaaaag
     4921 aattcgatac gattattcgc aaatttcgcg accgaaagtt cttttcccaa gaaaaagaac
     4981 ggaaaaaaca gccggactca tttatcatga gttgcatttt gatatagagt gcccgtataa
     5041 attccaattc agtcaacgca aacctagcgt cggcgggatt gtagtgaata ctgagcgcag
     5101 tcttctatcc ctatgctaaa aacaagctat tttttgggct cttatattaa taacattgac
     5161 catcttatca catgtaacat aaaagaacta gtgaaaatcg agcgtgtaac atatctgtaa
     5221 caataaggcg ctttcattct gaaaaaagag gaaaactaga cttcaacgcc tagttttcca
     5281 ctgtgtttta cacgataaaa tcttctggtc gaccagtttc ttcaaagtga ctcttgattg
     5341 ctgctaaaat tcgattagct gcgaatccgt cgccatatgg atttaccgcg tgtgccattt
     5401 tatcatgatt ttctttatta tccagcaaat tcagtgcttc tttaattaga ttctctttat
     5461 ttgttccaat tagtttcaac gtcccggctt cgattccttc tggacgctcc gtcgtatcac
     5521 gtaaaactaa aactggcacg cccatgcctg gagcttcttc ttgtacgccg cctgaatcgg
     5581 taaaaacaag ataagacttg cgcaagaaat tatgaaaatc aattgcgtcg agtggctcga
     5641 ttaaatgaat gcgttcatgt ccacctaaga ttttcgtcgc tttttctcta acggctggat
     5701 tcaaatgcat cggataaacg agttcaacat cctcacgact ttccacgatt tctcgaaccg
     5761 cctcaaacat cccttgcatc ggttcgccta aattttccct gcggtgagcc gtcataagta
     5821 ttaaacgatt gtcgccaaga ttttccaaga ttggatggtg gtaatctttt tgcacagttg
     5881 ttctaagggc atcaatcgcc gtatttccag tcacaaaaat agtacccgga tcttttcctt
     5941 ccgcaagcag attttctttc gcttgtttag ttggagaaaa gtgcatatcc gccattacac
     6001 cagttaactg gcgattcatt tcttctggaa acggcgaata tttattccat gttctaagtc
     6061 cagcttcgac atgtccgagc attttttgtt gataaaaggt agctagtcct gctgcaaaac
     6121 ttgttgttgt atcgccgtga actagaacga tatccggatt ttcggctgca ataacttcat
     6181 taattccatt cattacacgc gaagttattt cagctaaagt ttggcctttt ttcataatat
     6241 ctaagtcaat atctggttta atatcaaaaa tctctaagac ttgatctagc atttcacggt
     6301 gttgagctgt aatcactacc gttgactcaa atgtttctgg ttctttttct agtgccaaaa
     6361 cgagtggtgc catttttatt gcttctggtc ttgtcccaaa gatactcatt actttgattt
     6421 tagccaattg cgaacctcct tataaaaaaa ctcctcagaa atagctcgac aaaaaatttc
     6481 ccagcctgtt aaaaagcagt actgtttata attccttatc tcactaaacc gaggagattg
     6541 ttaattattt agttccgaat aatctatcgc cagcatctcc taagcctgga cggatataac
     6601 cattttcgtc taacttctcg tctaaaccag ctacgtagat ttctacgtct ggatgtgcgt
     6661 cttgaagggc tttaacgcct tcaggagctg ctactagaca catgaatttc atgttacgag
     6721 cgccgcgttt tttcaagcaa tcgatagcca taattgcgga tccgccagtt gcaagcattg
     6781 gatctacaac gatgaaaaga cgttcttcta cgtcagaagg tagttttaca aaatattcga
     6841 ctggttctag tgtatcatgg tcacgataaa gacctacatg ccctactttt gctgcaggaa
     6901 taagttttaa aataccatct tgcataccaa gtccagctct taaaatagga acaatcccta
     6961 attttttacc agtaagtgtt ttcgcagttg ttgtttgtag tggtgtttct acttggatgt
     7021 cttcgagttc catatcacgt gtaatttcgt acgccattaa tgtagcgact tcatctacaa
     7081 gttcgcggaa tgcttttgtt cccgtatttt tatctcgaat gattgttaat ttgtgttgga
     7141 ctagtgggtg attaattacg tgtacatttg ccattgatta gttcgctcct ttgatattga
     7201 aaatttcctt ctcttattgt atcagaacaa gacacaagtg caaggattaa tttgctatac
     7261 atgaaaaaaa ccggttttct ctattttata gaaaaaaccg gatcacttat tttataaact
     7321 tggataaagc ggatattcat ttgttaaagt agccacgcgt gcttttacat ctgcgagaac
     7381 ttcttcattt tctaaattat gcagtacttc tgaaataagt acaccaactt tttcaatcgc
     7441 aacttcatca aatccacgag tggtcactgc agcaacacct acacggatac cacttgtgac
     7501 aaatgggctt tccgtttcga atggaatggt atttttattc acggtaatac caacttcatc
     7561 taatactttc tccgctgctt ttcctgttaa gccaagtggt tttaaatcaa ttaataataa
     7621 atgattatcc gaaccacctg ttaaaacagc aacatcattc gcttgaagtg tttctgctaa
     7681 ttttttagag ttacgaataa tttgttcaca gtacgccgtg aattcaggtt gtaacgcttc
     7741 accaaacgcc actgctttcg ctgcgattac gtgcattaac ggtccacctt ggattcctgg
     7801 gaaaatcgat ttatttaatt tttgttccca ttctgctttg gctaaaatca ttccgccgcg
     7861 aggtccacga agcgttttat gggtagttgt cgttgtaaaa tcagcataag gaactggatt
     7921 ttgatgcaag ccagcagcaa caagaccagc aatatgcgcc atatctacca ttaagtatgc
     7981 gccaacttca tcagcaattt cgcggaattt agcaaaatca attttacgtg gataagcact
     8041 tgcgccagct acaatcattt ttggtttatg ttttaaagct gcttcacgaa caatatcgta
     8101 atcaatttct ttcgtatctt cacgaacgcc gtattcaaca aaattgtata aaacaccgct
     8161 gaaatttact gggctaccat gtgttaaatg cccaccatgt gaaaggttca taccaagaac
     8221 agtatcgcct ggttcaagca ctgtatgata aactgccata ttcgcttgag cacctgagtg
     8281 tggttggaca ttcgcatatt cagcgccaaa taattttttc gcgcggtcgc gtgctaaatc
     8341 ttccacaata tccacgaatt cacatccgcc gtaatagcgt ttccctgggt aaccttctgc
     8401 atatttattc gttaatacag atcccatagc ttccattact tgctcactaa caaaattctc
     8461 agatgcgatt aattcgatat tcgcgcgttg tctaccaagc tctaacttaa ttgcatcaaa
     8521 aacttcctta tcttgctttt gtaaatagac catctgtgga ccccatcctt ttctgataaa
     8581 tttttcaagt gaactgttat gtattatctt taataattac ttaaatcggg tagaaaagca
     8641 agcattttgg aataaaaaaa cgcaatttcc gatagtgaag cgcttcactt ataaaaaacg
     8701 ttcggaaatt gcacttttta gttcgtaata ggtgatttcg tattgctcga ttgatccacc
     8761 gtaaggatct ggaatatctg ttttatcttc ggaaattagt tgaattttat cgctcgcttt
     8821 tggaaaaagg ctttttagtt ccgcttgatg attttgagtc attacgtaga tttggtctgc
     8881 ccaatctata tctgcttttt taactttttt agcttggtgc gttgttggca aattcatctg
     8941 cgcgagaatt tgacgtgagt tttcagagat ggcatccccg tccagagcac gtgtcccagc
     9001 cgaacgaaca tctaaatccg gacgcaagtt ctgcaagatt ttttcagcta aagggcttcg
     9061 gcacgtattt cctgtacaaa caaataatac cttcattcgc gaatcctcct gttgccagca
     9121 gctttttcta atcggttcat aatcgctgct ccaagttccg tttctggata cacttccgca
     9181 aaaatcacat ctacatcagc atggtcgaaa gcccgtaaac ctttgtaaag acttgtagca
     9241 atttcgtcca atgcatttat actgccagtt atttcgatgg taccgctcgt gtttagttga
     9301 tttatcagtt cttttgtcgc caaaataccg agttttttat tcgcagcttc cgctttattt
     9361 atttcacttt gccaaaattg gatagatcct tctattagat aaactggcgc tttcggggca
     9421 tagtgcgtgt atttcatgcc aggtgctttt ggtttttccg tttctttcgt gttgtttgtc
     9481 gctatatcaa cagggccaat tatttgttca atctgttctt ttgtaacacc gcctgggcgc
     9541 agaataactg ggatatctaa agaacaatca ataacggtgg attctaaacc tacaccagtt
     9601 gcgccgccat cgataattcc ggctattttt ccatctaaat cttctattac atgactcgcc
     9661 gtcgtcggac ttggttttcc tgaacgattc gcgcttggag ccgcaacagg aatattcgct
     9721 gcatctatca atgctagact aacagggtgt tccggcatac ggacgcctac tgtggataaa
     9781 cccgcagaaa cattagttgc caaactatct tttttcaatg gaagaataac cgttagcgga
     9841 cccggccaaa atttttccat gagctggatg gcttttactg gataacttgc aacaaatgga
     9901 tccatttgtt cacgacgggc gatgtggaca attaatgggt tatctgacgg acggcctttc
     9961 gcttcatata ttttttgaac agcagcttgg ttagttgcgt ctgcaccaag accgtacact
    10021 gtttcagttg gaaaagccac gcattcaccg cttcggagta atttggctgc ttcctgaaag
    10081 attacttggt ttgattgttg gttatttatg ttccaatgaa tggtttgcat gaattccggt
    10141 cccctttaca taacttctat tatattttaa cgttttccgc cttattttta cagtattgtt
    10201 ttttaaaacc tgtaaatcgc tatttttgaa caaaagttat ccccaaactg tggataataa
    10261 ctttgtcaat gg
//
LOCUS       DASDXX010000099        10130 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.099, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000099 DASDXX010000000
VERSION     DASDXX010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10130
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.099"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(115..484)
                     /gene="ssrA"
                     /locus_tag="U0280_001841"
     tmRNA           complement(115..484)
                     /gene="ssrA"
                     /locus_tag="U0280_001841"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(600..1565)
                     /locus_tag="U0280_001842"
     CDS             complement(600..1565)
                     /locus_tag="U0280_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271770.1"
                     /translation="MKNLFRLFLVFSIVIIGVVSFQAIDASANETDVITQDDVDAVTS
                     LGLGYFTNYLTDEDLQMLGNAYFTNVNNIMIYPTQTMFTGFPDLPTLPKLDTLRAEGN
                     LSSEVLPENITVPDYQNYPELKYLDLSNRTIVGGLPNFSNIPKLETLLMSSCGLASED
                     VPDFTNLKNLQKVNFQTNQYRTEMTDFTYLDSLVSMDLSYNYLNVLPPTIVDKVIVLG
                     QIGTLPDQNVVFGEDTNITLPVYTQLDDLGRISGFQEVWIRDSNEKEIYNVAKVDYDE
                     VTKQIIVPTNNLDKGEYTIGIDFNGIEPYIEEGEVMNYSVKITIN"
     gene            complement(1616..5548)
                     /locus_tag="U0280_001843"
     CDS             complement(1616..5548)
                     /locus_tag="U0280_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5110 domain-containing protein"
                     /protein_id="HEM2271771.1"
                     /translation="MKKGMKQVCVSMAVVPLVWLNLGITQPLQVEVKAEETKEKEVKK
                     EANTGAAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLA
                     NNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIAKEPA
                     RMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDNTAA
                     DSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTVVEGRR
                     YVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNETEFRENINTY
                     RAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMI
                     GITKPRVVTNLEDGTATQQGKDAEANGYWYPGQSAYEDYAFPVTVRSIDPYNEDERNW
                     WWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVW
                     QTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGM
                     DTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKS
                     SMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLVAPV
                     LEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTISYEVNDDDWTDVPMFVKQGAIMPMQQ
                     PQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSKTADTST
                     FTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALETADGSGYAVGSD
                     VYGAVTYVKVPAQADADTVITTSGSASVVQTGTYEMETGSNFADTVADKPVAEKTYVD
                     GYDKDGAGTTIYANVKDSGDYNVDLTYKNASADNQSLSIFVNGDYVKQTTLKPNTDWS
                     VQSEALPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLK
                     VANDHWFYSGEGFVGGFGAAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNG
                     DYNSRVTFPSEGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILVSAEPI
                     NSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQS
                     AYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSNDDAAKAQMTVNNYDSSDGKTID
                     LVADDVWHYVTMKDVKVTTGNINTSFQMDSPGGTSIHIDNVRVMPSAE"
     gene            complement(5563..6507)
                     /locus_tag="U0280_001844"
     CDS             complement(5563..6507)
                     /locus_tag="U0280_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo2445 family class 3 internalin"
                     /protein_id="HEM2271772.1"
                     /translation="MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIA
                     EAIAGELDKDSVNDTITQADLDTMTLIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSN
                     NIGELPDLSDALPALENIEANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEG
                     LVSINMEDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQT
                     ATYPHTTIKQGENLEVFVPFIYQALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYM
                     YKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE"
     gene            complement(6568..9843)
                     /locus_tag="U0280_001845"
     CDS             complement(6568..9843)
                     /locus_tag="U0280_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding protein"
                     /protein_id="HEM2271773.1"
                     /translation="MKRKGKKSSLIFILTILIFSCLSGFGTNVFAMDGEYHSPYGDDD
                     LYTVQPTERSPRDPKAGEDVTLNITTWPIEDGQNVWVEWTKNGVAQENVTAAYDYNSG
                     NNTYWKADLGKFEKGDEITYTTKGSTDGGTAYESGPFTFYVTDWEYVQDVSSVVDNGD
                     SITLNMTATAGEFTPKLYLSFEDLDTLRMELSPTGKETGHAGKTGYTVDDGADKVTVT
                     TEDLRVEIQKSPYRMEVYQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDE
                     AFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGMYVNSDFH
                     SQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWA
                     FGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNG
                     EAFSYDDFTFNGKWTDPKAMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEAYMIS
                     QGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDG
                     GEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSG
                     IYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAF
                     APIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDT
                     ADNGKSMMRQMAMDYPEDINARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVD
                     LWNGGIHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTF
                     RVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSV
                     TIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAE
                     FAHLTNVSTASDHAGYTGTGFVAGFDAEKEAVEFDVDAVDGASDYTMEVRYSAGVEDA
                     TRTVYINGKKQQITLPKTADWDTWSTIEVPVTLQAGNNQVVFDFEADDTAGINFDHVV
                     FKK"
BASE COUNT         2802 a         2272 c         1694 g         3362 t
ORIGIN      
        1 atgattattc taaaatcgta attattttct tgactccatc gtttagcatc caaataaaaa
       61 agtgatacaa acagcttaaa aaagcagttt gtatcacttc tcagtttcca taaaatatgg
      121 agatggtggg agtcgaaccc acgtccagaa atatcggcac ttaaatatct acgagcgtag
      181 tcaccgtatt agcatttcgc ataaacatcg gcccggtaac aggcttccat tcagctagtc
      241 tgattaagct cttctattta accccagacg gagattaact agtgtagccc acttagagtg
      301 agacccttac cgtagcacat gggcgatgca cggaggatca gctatgctac tgcttattag
      361 gcagcgaaag ctaggttttg tttttctttg ccagttatta ttggctttga cgttgataac
      421 gaggacgatc cccccgactc gcaactcaag ctcgaactat ccctgtcgaa tccgtaacat
      481 ccccagagtt aaagtctaac agtagttatt atacaggaaa aaacgaggct ttacaaacag
      541 aaaaaacttg tgacatagcc aaatgcgcaa ctattattta gcatgtcaca agttttccat
      601 taattaatgg ttatttttac tgagtaattc ataacttcgc cttcttctat ataaggctct
      661 attccattaa aatcaattcc aatagtgtat tcacctttat caaggttatt tgttggcaca
      721 ataatctgct tcgtcacttc gtcgtaatcc acttttgcca cgttgtaaat ttccttctca
      781 tttgaatcac gaatccaaac ttcttgaaaa ccactaattc tacctaaatc atctagttgc
      841 gtataaactg gtagcgtgat atttgtatcc tcaccaaaaa caacattttg atctggcaaa
      901 gttccgattt gacctagtac gattacttta tccacaatag taggcggcaa cacatttaaa
      961 taattataac ttaaatccat acttaccaaa ctgtccaaat aagtgaaatc cgtcatttct
     1021 gttctatatt ggttcgtttg aaaatttact ttctgcaaat ttttcaagtt tgtaaaatct
     1081 ggaacgtctt ccgaagctag tccacaactg ctcatcaaca aggtttctaa tttaggaata
     1141 ttagaaaagt taggtaagcc cccaacaata gttcgattac taagatcaag atactttaat
     1201 tctgggtagt tttgataatc gggaactgta atgttttcag gtagtacctc gcttgataga
     1261 tttccttctg ctctcaaagt atctaatttg ggcaaggttg gtaaatcagg aaagccagta
     1321 aacatggttt gtgtaggata aatcataata ttatttacat tggtaaaata agcatttcct
     1381 agcatttgta aatcttcatc tgtgaggtaa ttggtaaaat aacccaaccc tagagatgtc
     1441 accgcatcca catcatcttg ggtaattaca tctgtctcat ttgcacttgc atctatcgct
     1501 tgaaaagaaa caaccccgat aataactatg ctaaatacca agaatagtct aaatagattt
     1561 ttcatcctat ctcctccaat ttataaagga cgaggaaatt ccccgccctt ctatattatt
     1621 ctgcggatgg cataactctt acattatcaa tgtgaatgct cgttcctcct ggggaatcca
     1681 tttggaaact agtattgata ttgcctgttg ttactttgac atccttcatt gttacataat
     1741 gccaaacgtc atctgcaact aagtcaattg ttttaccatc gctgctatca taattattaa
     1801 ccgtcatttg tgcttttgct gcatcatcgt tgcttacttt cacccatgct tcaacgtcgt
     1861 aattcgcatt attaactgga actgcgattt gttgagcgag tgtttgtttg taagcgccag
     1921 gtaaatagaa ataagcgctc tgtttaccaa atgctggtga ttctggagga ttgacacctg
     1981 agccactatc aacgccgtat gctttgtctt gcccatcagg atgagactct acccaattgg
     2041 tcgttgccgc tgcatcccgc tcaaatccgc cgttatcgag tagatttact tccgactgta
     2101 ccggtgaatt gattggctca gccgaaacaa gaattctatc gatatttaca ttaccagtag
     2161 tttcgccgtc tcttaggaag gtaattttat tggttcctgc ttttaagttc acagcttttt
     2221 ctgtatctga ccaaatattc cagttttcac cttcggaagg gaaagttacg cgagagttgt
     2281 agtcaccatt cgtatataaa tcgagtgttt gtggcatgcc agttccattt gctgttcgtg
     2341 tgtttagtac gtactcgccg tcagctggta catccacttc aaacttgatt tcatctcctg
     2401 ctgctccaaa tccaccaaca aaaccttctc cactatagaa ccagtgatcg ttcgccactt
     2461 ttaaagtgcc ggcaaggtcc gcttcttctg cttcgacttt tgctacagtt ggtgtgaaac
     2521 caatatttac tttgtctagt gatacttgat cagctttatc gcctgtgtcc gttaccactt
     2581 tataagaaat actatttttc cctgctgaaa gtggtaatgc ttcggactga actgaccaat
     2641 cggtgtttgg ttttagcgtg gtttgtttta cataatcacc attgacaaaa atacttaatg
     2701 attggttatc tgcggaagca tttttgtaag ttaggtccac attataatca ccagagtctt
     2761 ttacatttgc atagatagta gttccggcgc cgtctttatc gtagccatcc acatacgttt
     2821 tttcagcaac cggtttatca gcaactgtat cagcaaaatt ggatcctgtt tccatttcgt
     2881 atgttcctgt ttgtacgaca cttgcagaac ctgaagttgt aatgacagta tctgcatcag
     2941 cttgagctgg tacttttacg tatgttactg ctccgtatac atcgctacct acagcatatc
     3001 cgctaccatc agcagtttct aaagcggata aatcgtcata aactttgcta tctgcgccat
     3061 ttacttggac gctttcagcc gcatttccgt gtagttttac aatgtaattc tctgtgtctg
     3121 ctttataact tccttctttc gcaccaatcg tgaaagtact agtatcagca gtttttgaag
     3181 tagtcatttt ttgttttaaa taggtatctt tttcataatc aaaagatttt ccgtcgtcat
     3241 cgtaatgtgt aaaggatgtc tctttatctg atgcaaaagt gtctaaataa attgttttga
     3301 ctgcggattc gccaacatag ttttgtggtt gttgcattgg cataatggca ccttgtttaa
     3361 caaacatcgg cacatctgtc cagtcgtcat cattcacttc ataactgatt gtttgatttc
     3421 cttcgtatac gtcgccacgg ttgtagtcaa tccatgttcc tgctggtaaa taaatatcac
     3481 gagaacccgc tccttcttct aaaacaggtg ccacaagtaa tccatcacca aacatccact
     3541 catctgttaa attaaccaca ttttcatcag taggattatc aaacgtaagt ggttgaacta
     3601 gaccaacacc agagtcatat gcttgacgtt cataagcata catataagga atcattgagt
     3661 agcgccaagt catgctactt ttagcaactt cttccgccgt gccaccatag aaccaaggtt
     3721 gacgttgttg attttgattc ccatgcgtac ggaaaactgg aactagagaa ctaaattcca
     3781 tccaacgact ataaagttct gggtccgggt ttaacacttg gcccgaattg gcattgaaac
     3841 cacctgtatc catgccccat tttgtctgtc ctaaattaat tgtcgaaagc attgtactag
     3901 gttgttcttg catcccattt gcccagtcaa taacttcgcc ttttttccac tgaacgccga
     3961 tatcgccgga ccaagtagaa gtagaataac gctgtgcgcc tgggtagaag gttcttcctg
     4021 tttgccaaac acgttcattt gtatagtcgc gttggccttc atacatagct tctgatgtaa
     4081 atccagttgt gaaattacca aaccaataat cggctccatt agaagatact ttgtctgttt
     4141 catcattcca ccaaccgaca attcctttat ctagggcatc ctcagaatgt gaccaccacc
     4201 aattacgttc atcttcgttg tatgggtcaa tacttcttac cgttacaggg aatgcatagt
     4261 cttcatacgc agattgccct ggataccagt aaccatttgc ttctgcatct ttcccttgtt
     4321 gcgtggctgt tccatcttct aaattagtta cgacacgcgg ttttgtaatc ccaatcattt
     4381 ttacaccaag tgcatccata tcggatttta acgttgtgtc ttttgctgat gggaagtttt
     4441 ctgtattcca agcaaactcg ccataatcgc caccatacgt aggatctccg tagaatttcc
     4501 aatcataatc aaacgcgaag gaatcaatcg gaatcccttt cgcacgatac gtattaatgt
     4561 tttctctaaa ttctgtttca tttgttcccc actcaaagtt agagaatcca agcgaccatt
     4621 ttggcatcat tggagtatgc cctgttacat cagcataaga agacataatt tcttcgggct
     4681 caccagacat taaatacatc tctacatttt ctttcacgta gcgacggcct tcaaccactg
     4741 tatcgccgta ataaaactct aatttttctt catctgaaac ggaatacggg tacccgccat
     4801 cactatctac aagtaagcca tatcctgctg tagaccacat gaacggaccg cctgcattac
     4861 cttgctgacc cgcttgtgca gtcttattac tatcggcagc agtattatct cgttccatgc
     4921 ccaggtctcc gtcactaaaa ctaattccat aggcaccata aacatggtca gaagcgccgc
     4981 gcttaaatct aacaccgcca tcaaaaatcc cgccgtccgc tgattcagac aataacgttt
     5041 tcccattttt atctttaaaa gtcattcgtg ctggctcttt agcaatttct agcgtacatt
     5101 catctgttga aattatcatc ggatctgatt ccaagtcaat ggtcgcacca atcgctgtga
     5161 aagttgcatt cggatcaatc ataggtgtag atggactgtt ttcgatattg cgtggtcgca
     5221 aattcacctt aagcaaatta ttcgctagcg gggaaatttc caagtaatca tcttctgctt
     5281 catccccgtt atcaatttta agcgtgatga cattatcagt caccgttgct tcaaggacat
     5341 ttccaagccc ttcctccgca cttaatttcg catattcttc tttgctaagt tgcttcgcgg
     5401 ctcctgtatt cgcttctttt ttcacttctt tttctttcgt ttcttccgct ttcacttcca
     5461 cttgtaacgg ctgagttatc cctaaattca gccaaactag tggtacaaca gccatactga
     5521 cacaaacttg tttcatacct tttttcatca tctcgcccct ttttattctg taatagttac
     5581 tggaaaatca taccaacccg tatattctcc agagttataa cctaatgaaa tttctagcaa
     5641 atgctccccc ggttgtaagc cagctgtttc aatcttgtac atgtatgaac catcataggt
     5701 cggataaggt ggttcataaa gcgttctccc attgtcctta ataataatta aatcgtgtct
     5761 gcttggtgcg ataaaatcta atgcttggta aataaaagga acaaaaactt ccaagttctc
     5821 tccttgttta atcgttgtgt gaggataagt tgctgtctgg ttagcaaatg aatgtgtact
     5881 taattgttct gatagaaaga tatcttccgg aatagaaatt aaatgattct cattaagaag
     5941 tagtgaatct aagttaggca tattcatcca aatatcttcc gctacataac cagaaagtcc
     6001 agcatcctcc atattaatac ttactagtcc ttccattcca acaaattttg gaatattaaa
     6061 gccaaaatta ttttgactca aatcaacatt ggttaagtta ggatagtttg catctggaaa
     6121 aagagtaata ttagccccat ttgcttcaat attttctaaa gcaggaagcg catcagataa
     6181 atcaggcagt tctccaatat tattactcca aatcgctaat tcaatcgcgt ttgtaaatac
     6241 ttcattgttt agtacgctta agtcttcccc cgttaaaccc aatgagggca aaggaataag
     6301 agtcattgta tccaaatctg cttgcgtaat cgtgtcattt acagaatctt tatctagttc
     6361 tcccgcaatc gcctccgcta tcgcttccac aggaaaagcc tcaataatag gcgctggtaa
     6421 gggaactgta tccgcttgtg cttttatagt tggtgcaaat aatatgcaac aaaaagctat
     6481 aaatgctagc ccaattattt ttttcattca gttcaatcct ttcaacatag ccaccctctc
     6541 tatccataaa agggtggctt attggattta tttcttaaat actacatggt caaaatttat
     6601 tcccgctgta tcatctgctt caaaatcaaa tacaacttgg ttattaccag cttgcaaggt
     6661 tactggaact tctatcgtgc tccaagtatc ccaatcagcc gttttcggta aagtaatttg
     6721 ttgtttttta ccgttgatat atacggttct agttgcatct tctacgccag cactataacg
     6781 aacttccatt gtataatcag aagcaccatc cactgcgtct acatcaaact ctaccgcttc
     6841 tttttctgca tcaaagccgg ctacaaaacc agtaccagta tatcccgcgt gatcacttgc
     6901 agtacttaca tttgtcagat gagcaaattc cgcttcgtat ggtgcatgat ttacaccgtt
     6961 taatacgatt gcttgtttgg catcttttgc cgctgctttt acatatgtta agttttgtac
     7021 tgtatcatag tagtaacctg tcgttgcttc gttaaatgca tctagcgtat ccgctttagc
     7081 tacatctgcc ccgtcaatcg ttacacttgt aggttctgta ctgaaaactt gcatcgttgt
     7141 ttcatccgcc attgctggaa gatctacgga aactttttca tttgcaaagt cttcagaaac
     7201 actgatgtca cgcatttctc cgccgtttac atcatcatag aaactatatt cgctatctcc
     7261 agatggataa actcggaatg ttaaattatc ataggatttt aaatcgtttc cgacattttg
     7321 gccaagttgg tagccatctg tcatattcat cggaataatc gctccagctt ttgcaaatac
     7381 aggaagcgta tctacatctg cataatacga aatggtttcg ccacctggat gaattccgcc
     7441 gttccaaaga tcaacccatt cgccttctgg tagataaact tctttttctg tttgaccttc
     7501 ttgaacgatt ggcgctacaa gtaaatcgtc accgaacata tactgttcat ctagatcacg
     7561 cgcattgata tcttccggat aatccatggc catttggcgc atcatcgatt taccattatc
     7621 cgccgtatct tttgccgctg tataaatata tggaagtaaa ttcattcgtg tgtatagata
     7681 tttttggaat gtcggtaaaa ttgtttcgtc gcctgttctg gctactgcat tccaaggtga
     7741 acgttcttca cttggcgatg gatctgattt ttccgaatgg aattgcataa tcggtgcaaa
     7801 agctgccatc gcagttgcgc gtttatatag ttctgctgtt ggatagtctc ccgtaaatcc
     7861 agccatatcc cacgcccagt aagaaacacc tgaagttgaa gcactaagtc cagcttttaa
     7921 tgaagcttgg aaagagtcaa atgtggaagt ttgatctcct gaccagtaaa taccagattt
     7981 ttgtgctcca gaagttcctg aacgactaaa cgaaactgct tctggattaa tacttttcgc
     8041 aaaatcaaaa taacttgaaa cgtagtcagt tggataacgg tttctcattt cttgtccttt
     8101 ttcgccgtta gagaaagttg tatcacgtcc ccacaccatt tctccaccat ctgtcttaaa
     8161 tccgtcaata cctacttctg ttaataaata ctcacgctgg gacgtccacc aatctacagc
     8221 atctttatta gtgaaatcta gtaatatccc atttccaaac cactgagatg ccggaactcg
     8281 gtaaggagcc cctgttccat cgtccgcact atacccttgg cttatcatgt atgcttcatc
     8341 attatctctt tgttcatata ctgtaccgtc atcttttaat actggaactt gccataaaac
     8401 gatattcata cctgcatcat ggacactatc caccatagct ttaggatcag tccatttccc
     8461 gttgaaagta aaatcgtcat agctaaatgc ttccccgttt ttctttgctg tataggtcgc
     8521 attgttccaa atatagtaag tttcttcatc actccattgt tctaatacaa aacctgttgc
     8581 tggaatatca tttgcttttg cattagaaag tgcagagctt acatcggatt ctctatccca
     8641 ctcgtttgct gacatccaaa gtccaaaagc ccattttggt agcaaagtcg ttttccctgt
     8701 tatatccgtg tagttattta cgatatcatt ttgatctttc ccgctaataa catagtaatc
     8761 aagcatattc gtcatatcgc catcattgtc caatacaaag ctatatttat cttctacttt
     8821 agaagccatt tggaactgtg aatggaaatc agaattgaca tacatcccgt atttattagc
     8881 acttacaaaa aatggtaccg ctaaataggt tctttctgtc tgcgcttgat cttgatactc
     8941 attgtatacg tatgtctcta catcttttcc tcgttggtta atcgtgtcat aacgttcacc
     9001 aaaaccataa aatgcttcgt cgcttggtgt cataaagtta ttttgatatt gattgatgac
     9061 attttttcca tctgttaacc aacctaagct gttggcagtt gtatattcgc ttgtaagtaa
     9121 agttccgtct gcttggtaca cttccatgcg gtaaggagat ttttgaattt ctactcgtaa
     9181 atcctccgtt gtaactgtta ctttatctgc accatcatct actgtgtaac cagtttttcc
     9241 agcatgtcca gtttctttac cggttggtga tagctccata cgaagcgtat ctaaatcctc
     9301 aaatgaaaga tataattttg gagtgaattc acctgcagtg gctgtcatat ttaatgtaat
     9361 agaatcccca ttatctacaa cgctactaac atcttgcaca tactcccagt ctgtcacgta
     9421 aaatgtaaac ggaccacttt cataagcagt tcctccgtca gtagagcctt ttgttgtata
     9481 agtgatttca tcgccttttt caaattttcc taaatctgct ttccagtaag tattgttccc
     9541 gctattataa tcataagctg ctgtaacatt ctcttgtgct accccgtttt tagtccattc
     9601 tacccaaaca ttttgtccat cttcaattgg ccaggtagta atatttaatg tcacatcttc
     9661 accagctttg ggatctctag gagaacgttc tgttggttgg acagtatata aatcatcatc
     9721 tccatatggt gagtgatatt caccatccat cgcgaaaacg tttgtcccaa atccacttaa
     9781 acaactaaat attagtatgg tcaaaatgaa aattaaacta gatttctttc cctttcgctt
     9841 catctctctt tcctccctta atgtatattt ttactaaaaa catactactt ttgatgtgtt
     9901 atttcgcaaa attattaatt tttgcatatc ggcgattgta gaaataatca cataatgtta
     9961 taatgctttc acagatatac taaaaaagtt caaattacta ataattctac aaaaaaacgc
    10021 aactatgcca gaccattctt catggaaaaa caataattgc gttcatcaga agaccttgct
    10081 taaaaaactt taaaacaacc agttaatact ttttaacaaa gttaacatgt
//
LOCUS       DASDXX010000100        10101 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.100, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000100 DASDXX010000000
VERSION     DASDXX010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10101
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.100"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            182..1648
                     /gene="guaB"
                     /locus_tag="U0280_001846"
     CDS             182..1648
                     /gene="guaB"
                     /locus_tag="U0280_001846"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM2271774.1"
                     /translation="MWETKFAKEGLTFDDVLLVPAKSDVLPNDVDLSVEMAPSLKLNV
                     PIWSAGMDTITEAKMAIAIARQGGIGVVHKNMSIEQQAEEIEKVKRSESGVIIDPFYL
                     TPDHQVFAAEHLMGKYRISGVPIVNNEKERKLVGILTNRDLRFISDYSTVIKDVMTKE
                     NLVTAPVGTTLKQAEQILQKHRIEKLPLVDEAGILKGLITIKDIEKVIEFPNSAKDKH
                     GRLLAAAAVGITNDTFVRVEKLIEAGVDAIVIDTAHGHSAGVINKISEIRQTFKDVVI
                     VAGNVATAEGARALFEVGVDIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATVAREF
                     GKTIIADGGIKYSGDIVKALAAGGNAVMLGSMLAGTDESPGETEIFQGRQFKTYRGMG
                     SLAAMEHGSKDRYFQADAKKLVPEGIEGRVPYKGSVADIIFQLVGGIRSGMGYTGSPD
                     LRHLREEAAFVRMTGAGLRESHPHDIQITKEAPNYSIS"
     gene            1809..3581
                     /gene="recQ"
                     /locus_tag="U0280_001847"
     CDS             1809..3581
                     /gene="recQ"
                     /locus_tag="U0280_001847"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HEM2271775.1"
                     /translation="MIEQARAILQQNFGYQDFRNGQVDVISKLCAGEDTLAIMPTGGG
                     KSLCYQIPALLFDGLTIVVSPLISLMKDQVDALVSEGIAATFINSTLTNREIDIRLDA
                     AFSGELKMLYIAPERIETPGFQRLIEQVPISLFAIDEAHCISQWGHDFRPSYLTLCDS
                     LDKMTRRPLVIALTATATQAVSDDICRLLKIGADSVVKTGFSRDNLAFQVVKGQDKDK
                     YLIDYLTKNVTESGIIYASTRKEVERLHTFLLKKGVESGMYHGGMTDLARKDWQEKFL
                     YDDIRVIVATNAFGMGINKSNVRFVIHYNIPRNIEAYYQEAGRAGRDGVPSDCILLFS
                     PQDSRIQQFLIEQSEMDDERKQNEFAKLRQMTGYGYTEICLQKYIVQYFGDDEENCEK
                     CSNCLDTREATDVTILAQQVFSCIKRMGERFGKVLIAKVLTGSADQKVKDWRFDELST
                     YGLMKDASQKDVLQLIDYLTAEKYLQPTDSQFPSLKLTDRAVSVLRGELKVERKQAKR
                     AEKVKIDVNSDLFEKLREVRRELAAKHKVPPYIIFSDETLREMCAYMPQTEDALLEVK
                     GIGAMKRDKYGAEFLAVLQQEASK"
     gene            3605..5758
                     /locus_tag="U0280_001848"
     CDS             3605..5758
                     /locus_tag="U0280_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HEM2271776.1"
                     /translation="MTKTLVLAEKPSVGKDIGRVLGAKQGKNGYLEGGKYVVTWALGH
                     LVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPIKQTRKQYETVKKLMNRTDITTIVI
                     ATDAGREGELVARWIIDYAKIKKPLKRLWISSVTDKAIREGFEHLKPGKAYENLYHSA
                     VARSEADWVVGINATRALTTKYNAQLSCGRVQTPTLAMIQHREEEIRNFKPREYYGIT
                     ALTEQESFTWNNGQTFDKALAEKLVKSLQGENAVITDVSMKEKKNFSPGLYDLTELQR
                     DANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRFISTDIVPTLKERLAACGVGENA
                     KAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPVSLGDLSDKERKIYDLVVKRFLA
                     VLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIYGESREPDQLTKMKKGDTIPV
                     KRINLETGKTKPPARFNEATLLSAMENPSKYMETTNKALAKTLGETGGLGTVATRADI
                     IEKLFNSFSLEKQGKDIHITSKGRQLLELVPEDLKSPELTARWEQKLSKIAKGELDYR
                     KFTEEMRDYAKKAVTEIKQNDKKFRHDNITSQKCPDCGKPMLKVKGKRGTMLVCQDRE
                     CGHRESVSRTTNARCPNCHKRMEMRGEGDKQIFVCICGHREKLSAFQQRRDKQKNKNV
                     SKTDVAKFMKKQNKQEDEPFNNPMAEALAKLKLDK"
     gene            5867..7534
                     /locus_tag="U0280_001849"
     CDS             5867..7534
                     /locus_tag="U0280_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEM2271777.1"
                     /translation="MKHNQLIIETDVPAEMRDGVTLYADIYRPADAGEYPVLLTRLPY
                     SKSYGLHFIRPNILAEQGYVVIVQDVRGRYTSEGDFVPYIAEVDDGYDTIEWAANLPY
                     ANGNVGMFGLSYYGYTQILAAISGNKHLKAIAPIMAQNSMTDVFNDHDGALELGMWET
                     WNLESMLPNMLARTYKTQDELEEAVNTLMKNLDNLDALYQFKPYKDWPAIGQNEMPYF
                     SELLNYEPTHNHWQKIDAKSNYDKINVPGLHVAGWYDCFLDKTIANFQNGHLRGLGDK
                     LIIGPWTHANFTQMIGDRDFGMAGTKWGEANMHARHIEWFNHWLKKEPLPASAPVNYF
                     VMGLNDWKTAENWPPQNANMTPLYFKNEKVSAEFTPPTTSSEAKFSYDPENPVPSNGG
                     GTLHKALNADGPRDQQQIELREDVLCYSTEPLKEAIEVTGSIQVKLWAKSDAPNTDFT
                     AKLVDVFPDGTAFNLADGIIRAAKQHGDNVQNNINEYTIDLWATSNLFQKGHQIRVEI
                     SSSNFPRFDPNPNTGDNFINSTESQIANQTIYHSPEFPSHILLPIVR"
     gene            7713..9050
                     /locus_tag="U0280_001850"
     CDS             7713..9050
                     /locus_tag="U0280_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM2271778.1"
                     /translation="MKNIIKKTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIA
                     IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQ
                     DTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADEL
                     NLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTAST
                     TKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRV
                     ITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSKVKNPSTIAVDKGK
                     EDTVGLVTKDAVKLVVPKNGNEPKLNTKVTMKEKTIEAPVKKGTEVGKMEVSLKDGDK
                     LGYVDGKQTETIDVLTASDVEKANWFMLSAQAVGSFFTGIGNYVSDGVKGWFN"
     gene            complement(9131..10078)
                     /locus_tag="U0280_001851"
     CDS             complement(9131..10078)
                     /locus_tag="U0280_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM2271779.1"
                     /translation="MGILNEKVAVLLPCYNEELTIGKVIDDFKKELPNADIYVYDNNS
                     KDKTFEIAKDHGAIVRKEMRQGKGNVVRSMFADIDADYYLMVDGDDTYPAEYCHEILE
                     VLRNKEANMVIGDRLSNGTYTEENKRNFHDFGNSLVRNTINRIFKSNLRDIMTGYRGF
                     DRYFVKTMPVLSPGFEIETEMSIHALENRFLVKEIEIDYRDRPEGSESKLNTFSDGFK
                     VIMTIVRLFKNSRPFLFFNLLASLFVLVGVLVGLPVIIQFAQIGLVLKFPSALLATGL
                     IIMGMLFFICGLILDTIAHRSRQSYFLELVKYRERNPLN"
BASE COUNT         3453 a         1840 c         2134 g         2674 t
ORIGIN      
        1 tcttgtaaca tcatattcaa taactaaaaa tatacattgg ctatttcagc atgattatag
       61 aagacaagtc gcatgatgtg gatattttcc accatttttt ctttatgaaa ataaggataa
      121 gatgatgcgt tttttctata taaaaaagcg agtaccaata aaaaaggagt gtttgcgacc
      181 catgtgggaa acaaaatttg caaaagaagg cttaacattt gatgatgttt tacttgttcc
      241 agcgaaatcg gacgtattac caaatgatgt agatttaagt gtagaaatgg ctccatcact
      301 caaattaaat gtaccaattt ggagtgccgg aatggacaca attacagaag ctaaaatggc
      361 aattgcaatt gcgcgccaag gcggaatcgg tgttgttcat aagaatatga gtattgaaca
      421 acaagcggaa gaaatcgaga aggtgaaacg ctctgaaagt ggcgttatta ttgatccatt
      481 ttatctgact ccagatcacc aagtttttgc tgcagagcat ttgatgggta aatatcgtat
      541 ctcaggtgtt ccaatcgtga acaacgagaa agagcgcaaa ctagttggga ttttaactaa
      601 ccgcgattta cgttttattt ccgattattc tacagtaatt aaagatgtta tgacaaagga
      661 aaacctagtg acagcgccag ttggaactac gctaaaacaa gctgagcaga ttctgcaaaa
      721 acaccgcatc gagaaattgc cacttgttga cgaagcaggt attctaaaag ggcttatcac
      781 tattaaagat attgaaaaag taattgaatt cccgaactct gctaaagaca agcatggtag
      841 actacttgcc gcagcagctg ttggaattac gaatgatact tttgtacgtg tagagaaatt
      901 aatcgaggcg ggtgttgatg cgattgttat tgatactgcg cacggacatt cagcgggagt
      961 tattaataaa atttccgaaa ttcgccaaac tttcaaagat gtagtaattg ttgccggaaa
     1021 cgttgcaaca gctgaaggag cacgtgctct ttttgaagtt ggcgttgata tcgtcaaagt
     1081 tgggattggt cctggttcca tctgtacgac acgtgttgtt gcaggcgttg gggttcctca
     1141 aattacagcg atttacgatt gtgcaactgt tgcgcgtgaa tttggtaaaa caattatcgc
     1201 agacggcggc attaaatact ccggtgatat cgtgaaagct ctagctgctg gaggaaatgc
     1261 ggttatgcta ggaagtatgc ttgctggaac agacgaaagc cctggtgaaa cagaaatttt
     1321 ccaaggtcgt caattcaaaa cttaccgtgg tatgggtagt ttggcagcga tggagcacgg
     1381 ttcaaaagat cgttatttcc aagcagatgc gaaaaaattg gttcctgaag gtattgaagg
     1441 tcgcgttcct tacaaaggct ccgttgctga tattatcttc caattagttg gcggtattcg
     1501 ttcaggtatg ggttacactg gctctcctga tttaagacat cttcgtgaag aagcagcatt
     1561 cgttcgtatg actggcgctg gactccgtga aagccaccca catgatattc aaattacaaa
     1621 agaagcacca aactatagca tttcttaagg tcgaaaaagc aggaatctct tccaaaagag
     1681 gtttctgctt ttttatttct actataaaaa taagaaagct gcgagaaaac acgaatttct
     1741 ccaaaaagct tcaattaaag tcataaaacc gctatactgt ttctatagag gaggcgtgaa
     1801 aaaagataat gatagagcaa gcaagagcta ttttacagca aaactttggt tatcaagatt
     1861 ttcggaatgg acaagttgac gtcatttcga aactttgcgc gggagaagat acgctagcaa
     1921 tcatgccaac gggcggcggg aagtcacttt gttaccaaat cccagcactt ctttttgacg
     1981 gtttgaccat tgttgtttct ccactaattt cacttatgaa ggatcaggta gatgcgctag
     2041 tctcagaggg gattgcagct acttttatta atagtacact gactaataga gaaatagata
     2101 ttcgactgga tgctgcattt tcaggtgagt taaagatgct ttacattgct ccagaacgca
     2161 ttgaaacgcc aggttttcag cgtttaattg agcaggtacc tatttcatta tttgcgatag
     2221 atgaggcgca ctgtatttcg cagtggggtc atgattttcg ccctagctac ctgacgctgt
     2281 gcgatagttt ggataaaatg accagacgtc cgctcgttat cgcgcttact gcgacagcga
     2341 cgcaggctgt ttcagacgat atttgccgat tgctaaaaat aggagcagat tcagtcgtta
     2401 aaactggatt ttccagagat aatttggctt ttcaagtagt gaaagggcaa gataaagata
     2461 agtatttgat tgattattta acaaaaaatg taacggaatc cggaattatt tatgcttcga
     2521 ctcggaaaga agtagagcgg ctgcacactt tcttgctaaa aaaaggtgtt gaatctggta
     2581 tgtatcatgg cggaatgacc gatttagcac ggaaagactg gcaagagaag tttctatatg
     2641 atgatattcg agtgattgtg gcgacgaacg cgtttggaat gggaattaat aaatctaatg
     2701 tgcgttttgt tattcattat aatattccgc gcaatattga agcgtactat caagaggcgg
     2761 gtcgtgctgg gcgagacggg gttccaagtg attgtatctt gttgttttcc ccgcaagata
     2821 gccgcatcca gcagttttta attgaacaat ccgaaatgga cgatgagcgc aaacaaaatg
     2881 aattcgccaa gctacgccaa atgacagggt atggttatac ggaaatttgt ttacagaaat
     2941 acatcgtgca gtattttgga gacgacgagg aaaactgcga gaaatgtagt aattgcttag
     3001 atacaaggga agccacggac gttacaattt tagcgcaaca agttttttct tgtataaaaa
     3061 gaatgggtga gcgttttggg aaagtattaa ttgccaaggt tttgacaggt tctgctgacc
     3121 agaaagtgaa agattggcgc tttgacgaac tcagtactta tggattgatg aaagatgctt
     3181 cccaaaaaga tgtgttacaa ctaattgatt accttacagc agaaaaatat ttacaaccaa
     3241 ctgatagcca atttccttcc ttaaaactga cggatagagc cgtttcggtt ttacgaggtg
     3301 agctaaaagt ggaaagaaaa caagcgaaac gggctgaaaa agttaaaata gatgtaaata
     3361 gtgacctttt cgagaagttg cgggaagtgc ggcgggaact ggcagcaaaa cacaaggtgc
     3421 cgccatatat cattttttca gatgaaacgt tacgtgaaat gtgtgcatat atgccgcaaa
     3481 cggaagatgc actgcttgaa gtcaaaggca ttggtgcgat gaaacgcgat aaatacggtg
     3541 cagaattctt ggctgtactg caacaagagg catcgaaata aaatagaaga gagggttttg
     3601 acagatgaca aaaacattag tactggcaga gaaaccgtct gtcggtaaag atatcggccg
     3661 ggtactcggg gctaaacaag gtaagaacgg ctatttagaa ggtggaaaat atgtagtaac
     3721 ttgggcgctt ggacaccttg taacactagc tgaccctgag cgctacgatt cgaagtataa
     3781 aaactggaat atggaagatt taccaatgct tccagagaaa atgaagctag aaccaatcaa
     3841 gcaaacgaga aagcaatatg aaacggttaa gaagttaatg aaccgtacag atataaccac
     3901 gatcgttatt gcaacagatg caggtagaga aggagaactt gtagctcgct ggattattga
     3961 ttatgcgaaa atcaagaagc ctctaaaaag actatggatc tcctctgtaa cggataaagc
     4021 gatacgtgaa ggcttcgaac acttaaaacc agggaaagct tatgaaaatc tgtatcactc
     4081 tgcagtcgct cgttctgaag ctgactgggt ggtaggaatc aatgctacgc gtgcgttgac
     4141 aacgaaatat aacgcacaac tttcctgtgg ccgagtgcaa acgccaaccc ttgcaatgat
     4201 tcaacatcgt gaggaagaaa ttcgtaattt taaaccacgt gagtactatg gaattaccgc
     4261 gctaaccgaa caagaaagtt tcacgtggaa caatgggcaa acttttgata aagctttagc
     4321 agaaaaacta gtaaagtctt tacaagggga aaatgcggta atcacagacg tttctatgaa
     4381 agaaaagaaa aatttctcac caggtttata tgatttaacc gaattacaac gcgatgcgaa
     4441 taatagatat gatttttcgg cgaaagaaac gctgaatatt atgcaaacat tatacgagcg
     4501 ccacaaagta ctaacgtatc cacgaacaga ttcgcgcttt atttcaacag acattgtccc
     4561 aacactaaaa gaacgtttag cggcctgcgg ggtgggtgaa aatgcaaaag ctgctcgtca
     4621 aatcagcgga aaaccaatca aagcgaacaa atcatttgta gataacagca aagtgagcga
     4681 ccatcacgca attattccga ccgagcaacc tgtttccctc ggagatttaa gcgataaaga
     4741 acggaaaatt tatgaccttg tcgtcaaacg ctttttagca gtgctttcag acccatatat
     4801 ttatgaagaa acctctgtta aagctaaaat cggccaagaa gaattcactt taaaaggtaa
     4861 agttgtcaaa tcccttggtt ggaaaagtat ttacggagag tcgcgcgaac cagatcaatt
     4921 aactaaaatg aaaaaaggcg acactatccc agttaaacga atcaatttag agacggggaa
     4981 aacaaaacca ccagcgagat ttaacgaggc aactttactt tcagctatgg aaaacccatc
     5041 taagtacatg gaaacaacga acaaggcgct cgccaaaaca ctgggtgaga caggtggact
     5101 tggaacagtt gcaactcgtg cagacatcat tgaaaaactt ttcaatagct tctccttaga
     5161 aaaacaaggc aaggacattc atattacttc caaaggacgc caattgctag aattagtgcc
     5221 cgaagatctg aaatccccag aactaacggc gcgttgggaa caaaaattat ctaaaatcgc
     5281 aaaaggcgaa ctagattatc gtaaattcac tgaagaaatg cgtgactatg cgaaaaaagc
     5341 agtaactgaa attaaacaaa acgataaaaa attccgtcac gataacatta cttcacaaaa
     5401 atgcccagac tgcggcaagc cgatgctaaa agtgaaaggc aaacgtggta cgatgctagt
     5461 ttgtcaggac cgtgaatgcg gtcatcgtga atctgtttca agaacgacga atgctcgttg
     5521 ccctaattgc cataaacgaa tggaaatgcg cggcgaaggt gataaacaaa tttttgtatg
     5581 tatttgtgga caccgggaga aactatctgc cttccaacaa cgtcgtgaca aacagaaaaa
     5641 taaaaatgta tccaaaacag atgtagctaa attcatgaaa aaacaaaaca agcaagaaga
     5701 tgagccgttt aacaatccta tggcagaagc gcttgccaaa ttaaagctag ataaataaga
     5761 atggacaaag caacccactc atattgagtg ggtcgctttg tttgacatag tctgtcgtat
     5821 acgaaacaat aaaagagcaa tcaatactga aaaggagatg tttcacgtga aacataatca
     5881 attaattatt gaaacggatg tcccagctga aatgcgcgat ggtgtaacgc tttacgcaga
     5941 tatatatcgt ccagcagacg cgggggaata tccagtttta cttacaaggt taccttatag
     6001 taaatcatac gggcttcact ttattcgtcc taatattttg gcggagcaag gttatgttgt
     6061 tattgttcaa gatgttcgtg gcagatatac gtcagaagga gattttgttc catacatagc
     6121 agaagttgac gatggatatg atacgattga gtgggctgcg aacctgcctt atgctaacgg
     6181 aaatgtcggc atgtttggtt tatcttatta tggttatacg caaattttag ccgcaattag
     6241 cgggaacaaa catttgaaag ccattgctcc aattatggct caaaatagca tgacagatgt
     6301 ttttaatgac cacgacggcg ctttagaact tggaatgtgg gaaacttgga atctagagtc
     6361 catgcttcca aacatgctag cccgtactta taaaacgcaa gatgaattag aagaagcagt
     6421 gaacacatta atgaaaaatc tagacaattt agacgcactt tatcaattta aaccttataa
     6481 agactggcca gcaatcggtc aaaatgaaat gccttacttc tctgagttat taaattatga
     6541 accaacacat aaccattggc aaaaaatcga tgcaaaaagc aattatgata aaattaatgt
     6601 accaggtctc catgtagcag gctggtatga ctgcttttta gataaaacaa tcgctaattt
     6661 tcaaaatggt cacttgcgag gtcttggaga taagctcatc attggtccat ggacgcatgc
     6721 taatttcact cagatgattg gcgaccgtga ttttggaatg gcgggcacta aatggggaga
     6781 ggcgaatatg catgctagac atatagaatg gttcaatcat tggctgaaaa aagagccttt
     6841 accagcatca gcgcctgtta attattttgt gatggggtta aatgactgga aaacagctga
     6901 aaactggcct cctcaaaatg caaatatgac accattatat tttaaaaatg aaaaagtgag
     6961 cgcagaattc acacctccta caacatcttc agaagcaaaa tttagctatg atccagaaaa
     7021 tccagtacca tcaaacggtg gagggacctt acataaggca ctaaatgcag atggacctcg
     7081 tgaccaacaa caaattgaac ttcgtgaaga cgttctttgc tactcaacgg agccactaaa
     7141 agaagcaatc gaagttaccg gatcaattca agtgaaactt tgggccaaat cagatgcacc
     7201 taacacggat tttacagcga aattagtgga tgtatttcca gatggaacgg cttttaactt
     7261 agcagatggc atcatccggg cggccaagca acatggcgac aatgtgcaaa ataatattaa
     7321 tgaatacact atcgaccttt gggcaacaag taatttattc caaaaaggtc atcaaatccg
     7381 cgttgaaata tcttctagta attttccgag atttgatcca aacccaaata caggcgataa
     7441 ctttattaat tccactgaaa gccaaatcgc caaccagacg atttatcata gtcctgaatt
     7501 tccatcacat attcttctgc caatcgttcg ctagaaattt tggttttttg ggcgaaaagt
     7561 tttatatacg gcactactaa atcatggtaa aatatgaaag tatccgtcaa aaaaatgaaa
     7621 cttattcgaa aagggaattt ttatgatagg tttctttatt aaaatataga taaaatgagt
     7681 taataattta ctcaaatgaa ggagaagttg cagtgaaaaa cataattaaa aaaacaggga
     7741 ttgtaatcat ggcagcatcc cttgcagtaa gtggcttctt agtaagcccg aaagcagcac
     7801 aagccgcaga agcaccaaat gtaaatgcaa acgcagcaat cgcaattgaa gaaagtactg
     7861 gtaaaatttt atattcaaaa gacgctgaca agctaatggg catcgcatcc atgacaaaaa
     7921 tgatggacga atacttacta ctggaagcaa ttgacaaagg acaaattaaa tgggacgaca
     7981 aagtaaccat ttctgaatat gcttacaaag tttcacaaga cacatcacta tcgaacgtac
     8041 cacttagact tggcgaagaa tacactgtac aagaattata tgaagcaatg gcgatttact
     8101 ctgcaaacgg agcagcaatt gctatttccg aaaaaattgc aggttctgaa aaagaatttg
     8161 tcgatgctat gaataaaaaa gcggacgaac ttaatctagg cgagcaccaa ttcgttaacg
     8221 ctacgggcct taataacgaa gacttaaaag gcggtcagca agtaggtgga ccgaaagacg
     8281 aaaacaaaat gacagctcgc ggcatggcga agttagcaaa acacttaata aatgattacc
     8341 cagatgtact taaaaccgct agtacaacta agaaagagtt ccgaaaaggt acatcagacc
     8401 aaattgatat gacaaactgg aactggttat taccgggctt gatttacggg cgcaaaggtg
     8461 tagacggttt gaaaacagga acaactgatt atgctggaat gtgcttgact gcaaccgctg
     8521 tacaagatgg aatgcgagtt atcacagtcg tactccatgc aaatggtgga gcgcctggcg
     8581 agcatacaag tgctcgtttt gatgaaacaa acaaaatgct cgattatgct tttaataatt
     8641 tcaaagtaaa agaagtgcaa aaagcaggat caaaagtaaa aaatccttct acaattgcag
     8701 tagataaagg aaaagaagat acagtcggac tagttacaaa agatgcagtg aagctagttg
     8761 taccgaagaa tggcaatgaa cctaagttaa atacaaaggt aacaatgaaa gaaaaaacaa
     8821 tagaagcacc agttaaaaaa ggtacggaag ttggtaaaat ggaagtatct ctaaaagatg
     8881 gcgacaagtt aggctatgtt gacggaaaac aaacagaaac aattgacgta ctaactgcta
     8941 gcgacgttga aaaagcgaac tggttcatgc tctccgcaca agcggtaggt tctttcttta
     9001 caggcattgg taattacgtt tctgatggtg taaaagggtg gtttaattaa cagtagaaca
     9061 attgtagtac cgatataaat aaaagagtcg atttcctgaa ttaggaaatc gactctttta
     9121 ttggctaact ttagttcaat ggatttcttt cgcggtattt aacaagttct aagaagtagc
     9181 tttgtctgct tctatgagct atcgtatcaa ggattaatcc acaaatgaag aacagcatac
     9241 ccattatgat taaaccagtt gcaagtaatg cactcggaaa ttttagtacc aagccaattt
     9301 gagcaaactg aattatgact ggcaaaccaa ctagaactcc tacaagcaca aacaaagagg
     9361 ctaataaatt gaaaaataaa aacggacgac tatttttaaa taatcttaca atcgtcataa
     9421 ttactttgaa accatcagaa aaagtgttta gttttgattc actaccttct ggacgatcac
     9481 ggtaatcaat ttcaatttct ttcactaaaa agcgattttc caatgcgtga atgctcatct
     9541 cagtttcaat ctcaaaacca gggcttaaaa ctggcatagt cttaacaaaa taacgatcaa
     9601 agccacggta gcctgtcatg atatctctca aattactttt gaagatacga ttaattgtat
     9661 tacgtactag tgagttacca aagtcatgaa aatttctttt attttcttca gtgtaggtac
     9721 cattactcag acgatcacca ataaccatat tagcttcctt attgcgaagc acctctaata
     9781 tttcatggca gtattctgct ggataggtat cgtcaccatc gaccattaaa tagtaatcag
     9841 catctatatc cgcgaacata gaacgtacta cattaccttt accttggcgc atttcttttc
     9901 gaacgatagc accatgatct ttcgctattt caaaggtttt atctttagaa ttattgtcgt
     9961 acacataaat atccgcattt ggtaattctt tcttaaaatc atcaattacc ttaccaattg
    10021 taagctcctc gttataacaa ggcaagagta cagctacttt ctcatttaga attcccatta
    10081 ttctctcctt aaaattgatt t
//
LOCUS       DASDXX010000101        10096 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.101, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000101 DASDXX010000000
VERSION     DASDXX010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10096
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.101"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            26..1066
                     /locus_tag="U0280_001852"
     CDS             26..1066
                     /locus_tag="U0280_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEM2271780.1"
                     /translation="MSKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDN
                     PTYLKISDDEKFVYSVAKDGDKGGVAAFSVEEDGSLTFIGQDVQTGNPPCYVDASHDG
                     SIVVSANYHLGTIVSYPTENGALKPSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYV
                     ITCDLGTDKVTTYSATAGKLEKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIF
                     AEYDEATGALNVIQTIASLPEGFDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAE
                     NGTLTLAATTPVEGVGPRDFDLSYTGEILVATNENSNNVTVFGVNKETGALTLLQKDV
                     KVPEPVCIKFVK"
     gene            complement(1108..1803)
                     /locus_tag="U0280_001853"
     CDS             complement(1108..1803)
                     /locus_tag="U0280_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2271781.1"
                     /translation="MATGKLNVYLVRHGKTMFNTSRRVQGWSDTPLTNEGIEVAEFLG
                     RGLRETPFDAIYTSDRGRTIETAGIILRESKQTHLEINELRDFREFGFGKFEGEYEDI
                     MFGKVMEHLGFQSMEEAFEKFGDDGYQIISETVEKIDETGMSENWDEMVARLKNALDT
                     VSAENQVENANVLVVSHGMAINTIISFFDKSLINPDLANASVTRLAFENGKWTIETVN
                     DLSYIEAGKLVLV"
     gene            complement(1804..2511)
                     /locus_tag="U0280_001854"
     CDS             complement(1804..2511)
                     /locus_tag="U0280_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2271782.1"
                     /translation="MESSSRVVIYLTRHGKTILNTLDRVQGWADSPLTEEGALVAHDL
                     GRGLKGTNFVAAYASDRGRAIETARIVMKESDNYHLKLEKLAEMREFGFGKFEGEYNQ
                     AVLKMVAKAHGFESIESYYDKTSENNSNIVIDTVHKMDETGMTENSAIFEERLTAGLD
                     TILADANKRGGGDVLVVAHGMVIHRIIEMIDPSKNLRIIENASVTKVIFEDGAYSIEE
                     PGNMFYVEAGKKAQGGV"
     gene            complement(2640..4118)
                     /locus_tag="U0280_001855"
     CDS             complement(2640..4118)
                     /locus_tag="U0280_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEM2271783.1"
                     /translation="MSTKKEKTFFGHPRGLATLFNTEFWERFSYYGMRALLLYYMYTA
                     VADGGLGFSQSTATAIMSIYGSLVFMSGVIGGWFADRVLGARQTIFYGGVLIMVGHIV
                     LALPNGGAAALFGSMAFIILGTGLLKPNVSNVVGDLYPAGDNRRDAGFSIFYMGINLG
                     AFIAPPIVSAVSDNAGSFHAGFGVAAVGMAIALVVYVLTGKRYLKDAGKKAPNPLQKS
                     EAKSLIFKIIGIVLGIGLLIAVLTLITGSLTIDTIILAVTVMGVGVPLAYFIMMMTSK
                     KTEADEKSRLTAYIPLFLIAVLFWMIEEQGSSTLALFAAERTDLSIWGMNLNPANFQS
                     LNPVFVITLSPIFAWIWTKLGDRQPSTPRKFALGLFFAGLSFVVMMLPGILHGNTTTL
                     VSPLWLVLSFFICIFGEMFISPVGLSATTKLAPKAFASQTMSLWFLSDAMGQSFNAQL
                     TQLFNADTEIAYFGITGFVAIAFAVALFIFAPFLKKYMKGVH"
     gene            complement(4208..5389)
                     /locus_tag="U0280_001856"
     CDS             complement(4208..5389)
                     /locus_tag="U0280_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM2271784.1"
                     /translation="MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQDKKVLILYGGGS
                     VERFGTLDKVKTALKSREVGEFGGIEANPTYETLIKAIRLVKEENYDFLLAVGGGSVI
                     DGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFV
                     EKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQ
                     DRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLG
                     HEITALYGIDHARTLAIVLPSLLNVRRSEKHEKLVQYAERVWGIKSGSDEEKIDAAIL
                     KTREFFESLGAGTRFSDYGLGEEVVDLLVDQLERHGLTNISERGDQTLEVSRQIYTNA
                     L"
     gene            5599..6234
                     /locus_tag="U0280_001857"
     CDS             5599..6234
                     /locus_tag="U0280_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM2271785.1"
                     /translation="MLIKNLCIPKINLTTVPGDATLQEAIHLLEESGYRCVPVLDEKG
                     EKFLGNIYKMHIYKHAANGGSLSDPVMSLIKNATKHICVNASFFEVFFTIKELPYIAV
                     LNEQGNFYGILTHGKLLGLLQDGWNVKTTSYVLTIATGEVQGALTKITKIIDRYSSIS
                     SLITLDNQTEDFIRRVLVSLPVGVTEDKKNEIVSHLERKGLRVVETEKIEK"
     gene            complement(6291..7322)
                     /locus_tag="U0280_001858"
     CDS             complement(6291..7322)
                     /locus_tag="U0280_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF916 and DUF3324 domain-containing protein"
                     /protein_id="HEM2271786.1"
                     /translation="MKKICAIIFACVLAILCFPGQQAYATENSSFSVKAILPDNQASS
                     VTYFDLQMKPKQKQSLNVEITNQSKEEITVNCVANTAVTNEMGYVDYSIPNTKPDKTL
                     KYPFADMVKESVSEVTLKPNETKIWTAAIQMPAENYDGIILGGLHFQEKKEEDKEKDS
                     SENDVQIKNEYAYVIGVKLTEKTTVVKPELELNQIKPATRNYRNVVEMNLQNTKATLV
                     GGLAVDAKIYKKGSEKVLHESKRTDLSMAPNSNFNYSVDWENQELKPGKYKVHLVAKN
                     KEDKWEWTKEFTISSDQAKKANKVALGLEKDYTWMYIVGGVLLFILLIIATYFVGKRA
                     AKKKQENEK"
     gene            complement(7398..8240)
                     /locus_tag="U0280_001859"
     CDS             complement(7398..8240)
                     /locus_tag="U0280_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxL domain-containing protein"
                     /protein_id="HEM2271787.1"
                     /translation="MTSRTVKVTTASLLALGLIVAPVLSGDFASAATSVTKDSKGIVK
                     FDKSTTPDPDPVNPDPVDPDPVIPDPTDPPVGTDGLWILAVSDWDFGTHNVSSLSSGA
                     LNVHAADDTISTYVDANGNGQQDLPGEVSVTKKVTPYAQISDVRGTNTGWTLSVTGSA
                     FKDSSTPAKTIPGAELTIPKSTVSSATSTAQAPTGYDSVTISMTGGAAVPVMAAKDMQ
                     TATPTNFNDDQGMGTWTDSFGSQAVSATDTSKPKLSIPKNVVVADGTYQSTLTWTLSD
                     TPAV"
     gene            complement(8284..8580)
                     /locus_tag="U0280_001860"
     CDS             complement(8284..8580)
                     /locus_tag="U0280_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2271788.1"
                     /translation="MKKMGFILICCLFVCASPFYVKANTDKATSKAGVIFTHDPRKPR
                     TGTDDRSGTFPTKVPPKRLPKTGDTTDFYLVLLGFGFILIAKKGYFKEVREEIR"
     gene            complement(8620..>10096)
                     /locus_tag="U0280_001861"
     CDS             complement(8620..>10096)
                     /locus_tag="U0280_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2271789.1"
                     /translation="APTLKYIDLAGNNISDLSLFKKLPNKLPSLEEISVERNNISDVS
                     PLADFASTKIKVFDLDDNHITDLSSLTNNKMPNLQRLYVRSQSFYVETPVVTSSKYEF
                     SLQPSVFGITKPVKITATNPKATIDPITSKITYSAEVMAKRPKYSSNRVSGVTYSWDE
                     DIPFNGSNNLVEYNGTFYKPLTYVEPPQVVSYNSGLTYELGTPLTEQQFLNDLNVITD
                     QPTTITTNFDKVLKDVNSVGFYPVTIKASNIEGNTEFTTSVLIKYKPPVITADAEYTY
                     LVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLSSPKSGYYEQDAI
                     PITVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLTCYGSSGKAELEVIDRRT
                     VRQGWTITGAMTPFTNSGGDILQTSLKYQSKSPSSSPIYLNTTNQPIEKKQSAVTDPK
                     YDSTIVNLEDSLSMEIEPNDALVNDSYESKITWTLEDAPRP"
BASE COUNT         3016 a         2108 c         1760 g         3212 t
ORIGIN      
        1 tatcttatat ataggaggaa ttggcatgtc aaaaaatcaa gcaactgctt atatcggtac
       61 atataccaaa gccgagagcc aaggtatcta tcgcttagta atcgacaaaa ctaccggcga
      121 aatcaaagaa aataaattag ctgggaaaat ggacaatcca acatatctta aaatttcaga
      181 tgacgaaaaa ttcgtttatt ctgtagcaaa agatggcgat aaaggtgggg ttgcagcttt
      241 ttctgtggaa gaagacggtt cgcttacttt catcggtcaa gatgttcaaa caggtaaccc
      301 accatgttac gtagatgcct ctcatgacgg ttctatcgtt gtatctgcaa actatcactt
      361 aggcacaatc gtaagctatc caacagaaaa tggtgcatta aagccttctg tttctaccat
      421 tcaacatact ggtaaaagtg ttcacgaacg ccaagaaaaa ccacacgcgc actttgcagg
      481 attcacacca gaccaaaaat acgttatcac atgtgacctt ggaacagaca aagtaacgac
      541 ttattccgct actgctggca aacttgaaaa agtaactgag ctagacgtaa aacctggaag
      601 cggtcctcgt aacctagtct tccatccaaa tgctaaatat gtgtacatca tgacagaatt
      661 aacttccgaa gttatttttg ctgaatatga tgaagctact ggcgcattaa acgtgattca
      721 aacaatcgct tctcttccag aaggttttga caaagaaaat aaaggtagcg ctatccatat
      781 ttctcctgat ggtcgtttcc tatatgtgtc aaatcgtggc caagatgcca tcgttagtta
      841 tgcagttgcc gaaaacggca cactaacact tgcagcaaca acaccagtag aaggcgtagg
      901 tccacgtgac ttcgacctga gctacactgg cgaaatctta gttgcaacaa acgaaaacag
      961 caataacgtt actgtttttg gtgttaacaa agaaactggt gcacttacat tacttcaaaa
     1021 agatgtaaaa gttcctgaac cagtttgtat taaattcgta aaataactta aaaaatccag
     1081 aatggcctca gtgccattct ggatttttta tactaaaact aatttacctg cttcaatgta
     1141 acttaaatca ttcactgtct caattgtcca tttgccattt tcaaatgcaa gtcttgtaac
     1201 acttgcatta gctaagtctg gattaattaa tgacttatca aagaaagaaa taatcgtatt
     1261 aatagccatt ccgtgagaaa caactaaaac gttggcattt tccacctgat tttctgcact
     1321 aactgtatct aaagcatttt ttaatctagc aaccatctca tcccaattct cggacatacc
     1381 agtttcatca attttttcta cagtttccga gataatttga taaccatcat cgccaaattt
     1441 ttcaaaagct tcttccatcg actggaaacc aagatgctcc atcacttttc caaacataat
     1501 atcttcatac tcaccttcaa atttaccaaa accaaactca cggaaatcac gtagttcatt
     1561 gatttccaaa tgcgtctgct tgctttcacg taaaatgatg cctgccgttt caattgttcg
     1621 accacgatca ctcgtataaa tagcatcaaa gggagtttca cgaaggccac gacctaaaaa
     1681 ttctgccact tcgattcctt catttgttaa tggtgtatct gaccagcctt gcacacgacg
     1741 agatgtattg aacatcgttt tgccatgcct aactaagtac acattcagtt ttcctgttgc
     1801 cacttaaact cccccttgcg ccttttttcc agcttctaca taaaacatgt ttccaggttc
     1861 ttcaatcgaa tatgctccat cttcaaaaat aacttttgtc acactggcat tttcgataat
     1921 tcgtaaattt ttactaggat caatcatttc aataatgcga tgaataacca taccgtgcgc
     1981 tactactaac acatctccac caccacgctt attagcatcg gcaagaatag tatcgagtcc
     2041 cgcagttagt ctttcttcaa aaatagccga gttttccgtc attccagtct catccatttt
     2101 gtgcaccgta tcaatgacaa tattggaatt attttcagaa gttttatcat aatagctttc
     2161 aatagattca aaaccatgcg cctttgctac catttttaaa acagcttgat tatattcccc
     2221 ttcaaatttg ccaaagccaa attcacgcat ttcagctaat ttttctagtt ttaaatgata
     2281 gttatcgctt tctttcatta caattcgtgc agtttcgatg gcacgtcctc ggtcacttgc
     2341 gtaagcggct acaaaattag tcccttttaa gccacgaccc aaatcatgcg caacaagtgc
     2401 tccttcttca gtaagcggtg agtccgccca gccctgcacc cgatcaagtg tgtttaaaat
     2461 cgtctttcca tgtcgcgtta aataaataac taccctgctt gatgattcca tgtatacact
     2521 cctttaaatt atcacttctc cctttaatag tagcaatctt aggagttaat ggcaaactaa
     2581 tttattccta gcataaaaaa acacttcctc caaataagga gaaagtgcgc ttaattcctt
     2641 taatgaacgc ccttcatata ttttttcaag aatggcgcga aaatgaataa tgctaccgca
     2701 aaagcaattg ctacaaaacc agtaataccg aaataagcaa tttcagtgtc agcattaaat
     2761 aattgtgtta attgtgcgtt aaatgattgc cccattgcat ctgacaagaa ccataagctc
     2821 atcgtttgtg aagcaaaagc ttttggcgct agtttggtag tcgcagataa tccgactggt
     2881 gagataaaca tttcaccgaa aatacagatg aagaaactta gtactaacca aagcggactt
     2941 acaagcgttg ttgtgtttcc gtgcaagata cccggaagca tcataacaac gaaagataaa
     3001 ccagcgaaga atagtccaag ggcaaattta cgtggtgtag atggttgtct atcaccaagt
     3061 ttcgtccaaa tccatgcgaa aattggcgaa agtgtaataa caaacactgg gttaagcgac
     3121 tggaaattgg ctggatttaa gttcataccc caaatagata aatccgttct ttctgccgcg
     3181 aaaagcgcca atgtggacga gccttgttct tcaatcatcc aaaatagtac agcaattaaa
     3241 aataacggta tgtatgcagt taatcgtgat ttttcgtccg cctcggtttt cttgctagtc
     3301 atcatcataa taaagtaagc gagtggaacc cccacgccca tcaccgttac agcaaggata
     3361 atcgtatcaa ttgttaagct acctgtaatt agtgttaaaa cagcaattaa taatcctatg
     3421 cctaaaacaa tgccaattat tttgaatata agactttttg cttctgattt ttgaagcgga
     3481 tttggcgctt ttttgccagc gtcttttaag taacgttttc ctgtaagaac ataaacaaca
     3541 agtgcaattg ccataccaac agctgccaca ccaaaaccag catggaaact tccagcatta
     3601 tcagaaactg ccgaaacaat aggcggggca ataaatgcac ctaagttaat ccccatgtag
     3661 aagatactaa aaccagcatc acgacgatta tcgccagctg ggtataaatc gccaacgaca
     3721 ttagaaacat tcggtttaag tagcccagtt ccgagaatta taaatgccat cgaaccaaat
     3781 aatgccgctg ctcctccatt tggtaaagct agtacaatat gccccaccat aataaggact
     3841 ccaccgtaaa aaatggtctg tcgtgccccc aagacacggt cagcgaacca tccaccaatg
     3901 actcctgaca taaatactag tgaaccataa atagacataa ttgctgttgc ggtagactgg
     3961 ctaaacccaa gtccaccatc tgctactgca gtatacatat aataaagtaa taatgcacgc
     4021 attccgtaat aggagaatcg ctcccaaaat tcggtgttaa ataatgtagc taggccgcgc
     4081 ggatggccga aaaacgtctt ttccttcttg gtactcaaga aatttcgccc tctttcattt
     4141 tctattgatt tttatttaag taagcaaatt tcttctctaa tgatttgcgc aaaagtttcg
     4201 ttatccatta taaagcattt gtataaattt gacgagatac ttctagcgtt tggtcgccgc
     4261 gttctgaaat attcgttaaa ccgtgacgct ctaattgatc aacgagtaag tccactactt
     4321 cctcgccaag cccataatca ctaaatctag ttcctgctcc taagctttca aagaactcgc
     4381 gtgttttgag aatagcagcg tctatttttt cttcatcact accactctta atcccccaca
     4441 ctcgttccgc atattgcact aatttctcat gcttttcact gcgacgaaca tttaaaagag
     4501 acgggagaac tattgctaac gtacgtgcat ggtcaatccc ataaagtgcg gtgatttcgt
     4561 gacctaaact gtggcttgcc caatcttgcg gaacgcctct ggataatgtt ccattgagtg
     4621 catttgtagc tgaccacata aaagtagcac gtgtattata atcatgatta tcttctttga
     4681 taacatctgg accaatttcg attaaagttt gtagtagact ttcggcataa cgatcttgca
     4741 gcaaagcacc tactggataa gtcatatatt gttccattac atgcacatac gcgtccataa
     4801 taccatttgc aagttgacgt tttggaagtg tgtatgtaag ttctggatca agtaaagaaa
     4861 aaacaggata agtataagca ctaccaaagc caagtttcgc tttcttctcc acaaaagtga
     4921 ttacaccacc gctattcatt tcagaaccag ttgcaggaag tgttagtact gttccaaaag
     4981 gaagcgcttt tgtaatcgga cgtttttcgc caattccgct accaaaaata tccatcggtt
     5041 caccgtcgaa caatgctccc gctgcaacga attttgttcc gtcaatcact gaccctccac
     5101 cgactgcaag taaaaagtca tagttttctt ctttaactag tcggatagct ttaattaacg
     5161 tttcgtatgt aggattcgct tcaatgccac caaattcgcc tacttcgcgt gatttaagag
     5221 cggtttttac tttatctaaa gttccaaaac gttctacact tccaccacca tacaaaatca
     5281 atactttttt atcttgagga atcacttcat ttaattcatt aaaacggttt ttaccaaaaa
     5341 taatatgagt agggttataa taatcaaagt tcaacatttc tttttgcatg ttaacgtcct
     5401 tctttctgtt tataaattta catagcatag ttaataatac acttttttta gaaaatttaa
     5461 accttatgcc aaaagtttcc atttatataa gtaaattatc gtattttttc cgaattatcc
     5521 cacctgataa tagtgatttt ctatacaaaa gtcctacttt acgttaaaat gaaagggaag
     5581 aagaatggag tgaagaacat gttgataaaa aacctttgta tccctaaaat aaatttaaca
     5641 accgtccctg gagatgcaac tttacaagag gctatccatt tacttgaaga atctggttat
     5701 cgctgtgttc ctgtattaga tgaaaaaggt gaaaaattct taggtaatat ttataaaatg
     5761 catatttaca aacacgcagc taacggtggt agtcttagcg acccagtaat gagcttaatt
     5821 aaaaatgcga cgaagcatat ttgcgtcaat gcatctttct ttgaagtctt ttttacaatc
     5881 aaagagcttc catatattgc ggttttaaat gagcaaggta acttttatgg aattttaacg
     5941 cacggaaaat tacttggttt actccaagat ggctggaatg tgaaaacaac tagctatgtt
     6001 cttacgattg cgactggcga agttcaaggg gccttaacta aaatcactaa aattatcgat
     6061 cgctattcga gcatctcaag cttgatcact ttagacaatc aaacggaaga tttcattcgc
     6121 cgcgtacttg tttccttacc agttggcgta acagaagata agaaaaacga aattgtttcc
     6181 cacttagaac gcaaaggact tcgtgtcgta gaaacagaaa aaatcgaaaa ataataaaaa
     6241 cagcttgaaa acgaggtaaa ttctcatttt caagctgttt tttcgttagg ctatttttca
     6301 ttttcctgtt ttttctttgc tgctcgtttg ccgacaaagt aagttgcgat aataagaaga
     6361 atgaaaagca atactccacc tacgatatac atccacgtgt agtctttctc cagtccaaga
     6421 gctactttat tggctttttt tgcttgatca gaagagatag tgaattcttt tgtccactcc
     6481 catttatctt ctttgttctt agcaactaaa tgcactttat atttacctgg ttttaactct
     6541 tgattttccc aatctacact ataattaaaa ttggaatttg gcgccatgga taaatctgtg
     6601 cgttttgatt catgtaaaac tttttcgctg cctttcttat atatttttgc atccacggcc
     6661 agtccaccaa ctaaggtcgc ttttgtattt tgcaaattca tttctactac atttcggtaa
     6721 tttctggtcg ctggtttaat ttgatttaat tctaattctg gctttacgac ggtcgttttt
     6781 tcggttaatt tgacaccaat gacgtaggcg tattcatttt taatttggac atcgttttcg
     6841 ctggagtctt tttctttatc ctcctctttc ttttcttgaa aatgtaatcc tcctaaaata
     6901 ataccgtcgt agttttcagc gggcatttga atagccgctg tccaaatttt ggtttcgttt
     6961 ggcttaagtg taacctcaga gacactttcc ttcaccatat ctgcaaaggg gtattttaac
     7021 gttttatctg gtttcgtatt tggtatggaa taatccacgt agcccatctc attggtaacg
     7081 gctgtattgg caacgcaatt aacggtgatt tcttctttac tctggttcgt aatttctaca
     7141 tttaaacttt gtttttgctt tggtttcatt tgtaaatcga aataggtcac actagatgcc
     7201 tgattgtcag ggagaattgc ttttacggaa aaactactat tttctgttgc gtacgcctgc
     7261 tgtcctggaa aacaaagaat agctagtaca caagcaaaga tgatagcgca tatttttttc
     7321 aagtgtctct ttcctcctaa ttgctcaatg taaaaagaga aaacaacatc caaaaatgaa
     7381 gttttctctt aaaaatgtta aactgctggt gtatcgctta aagtccaagt taatgtactt
     7441 tgataagttc catcagcgac aacgacgttt ttcggaatgg ataattttgg tttggaagta
     7501 tctgttgcgg acactgcttg agaaccaaag ctatctgtcc atgtgcccat cccctggtca
     7561 tcgttaaagt tggtcggtgt agctgtttgc atatctttag ctgccattac tggaactgct
     7621 gcgccgccag tcattgaaat tgttacgcta tcatatccag ttggcgcttg agcggtagaa
     7681 gtcgctgaac taacagtcga tttgggaata gttagctctg cacctggaat cgtttttgct
     7741 ggtgtagaag aatctttgaa agcactaccc gtcacggaaa gtgtccaacc tgtattagta
     7801 ccacgaacat cactaatttg tgcataagga gttactttct tagttactga aacttcccct
     7861 ggcaaatctt gttgtccatt accatttgcg tctacataag tagaaatcgt atcatccgct
     7921 gcatgtacat ttaacgcacc tgaagataag ctagaaacgt tatgcgtacc aaaatcccag
     7981 tcagatacgg ctaaaatcca aagtccgtct gtacctacgg gtggatcagt tggatccgga
     8041 ataactgggt ctggatcaac tggatctgga tttactggat ccggatctgg cgtggtgctt
     8101 ttatcaaatt ttacaatccc tttggaatct ttcgttacgg aagtggcagc tgaagcaaaa
     8161 tctccagaaa gtactggtgc cacaatcaaa cctaatgcta ataaactcgc tgttgttact
     8221 tttactgttc tacttgtcat tattattctc ctctttctga tatccttttt ttgtcgtgca
     8281 gtttcaccgg atttcttccc tcacctcctt aaaatagcct tttttcgcga ttaaaatgaa
     8341 accaaaccct agtaaaacaa gataaaaatc agttgtatct cctgttttcg gcagtctttt
     8401 tggaggaact ttggtcggaa aagtgccgct tctgtcatct gttccagttc ttggttttcg
     8461 ggggtcatgc gtgaaaatca ctcccgcttt acttgtcgcc ttatccgtat tcgcttttac
     8521 ataaaacggc gaggcgcaca caaataaaca acagattaaa atgaatccca tttttttcaa
     8581 tttagatagc tccttttgtt tgatgtagct gattgcttat tatggtcgag gcgcatcttc
     8641 tagtgtccag gtgattttcg actcatagga atcgttcact agcgcatcat ttggctcaat
     8701 ttccatggat aaactgtctt ccagattgac gatggtagaa tcatattttg ggtctgtcac
     8761 agctgattgt ttcttttcga taggttgatt cgtcgtattt aaataaatcg gactactgga
     8821 aggcgatttg ctttgatatt ttagcgaagt ttgtagtata tcgccgccgc tattggtaaa
     8881 tggcgtcatc gcacccgtta tcgtccagcc ttgccgcaca gttcgtctat cgatcacctc
     8941 taactcagcc tttccagacg aaccatagca tgtaagtgtt tgtttcttat ctgaaattgg
     9001 tacggaatct gcatttgcat ctatatccat tcgaaattca tctgggattt gcaattccaa
     9061 aagttctttt acgtgaacaa tgactgtaat aggtattgca tcttgctcat agtagccact
     9121 tttaggtgaa gaaagagtta caacataatc tcccgccgta ttaagtctta ctttatatat
     9181 aaagtcatct cttagtgttc cttcacctgt caaagttgca tttacatctg ctcgaaattg
     9241 agtagcattc actttatctc ctactaaata ggtgtattct gcatctgcgg ttataactgg
     9301 tggcttatac ttaatcagta ccgaagtagt gaactccgta tttccttcta tgttagaagc
     9361 tttgatagtg acagggtaaa agcctacaga attcacatct tttagcacct tatcaaaatt
     9421 tgtagtaatc gttgttggtt gatctgttat cacattgaga tcgtttagaa attgttgttc
     9481 cgtaagtggt gtacctagct cataagtaag gcctgaattg taagacacaa cttggggcgg
     9541 ttcaacataa gttaatggct tgtaaaacgt accattgtat tcaactagat tattgctacc
     9601 attaaacgga atgtcctcgt cccacgaata ggtaactcct gaaacccgat tagagctata
     9661 cttcggtctt ttggccatta cttctgctga atatgtaatt ttagaagtaa taggatcaat
     9721 agttgctttg ggattagtag cagttatttt aaccggcttg gttattccaa aaacagatgg
     9781 ttgtaaagaa aattcatact tactagaagt aactaccggc gtttccacat agaaactttg
     9841 gctcctaaca tataatcgct gtaaattagg cattttgtta tttgtaagac tagataaatc
     9901 agtaatatga ttatcatcca aatcaaacac ctttatttta gtactggcaa aatcagcaag
     9961 cggtgaaaca tctgatatat tatttctttc tacagatatt tcttctaaac taggtaattt
    10021 attaggaagc tttttaaaaa gagataaatc agaaatatta ttacccgcta agtctatata
    10081 tttaagtgtt ggtgcg
//
LOCUS       DASDXX010000102        10036 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.102, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000102 DASDXX010000000
VERSION     DASDXX010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10036
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.102"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..519)
                     /locus_tag="U0280_001862"
     CDS             complement(<1..519)
                     /locus_tag="U0280_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEM2271790.1"
                     /translation="MPSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKN
                     EGRLSLNPVVHIDLFGLLMILIAGFGWAKPTPVNRFKLKKRRLGSILVSLAGPVSNLL
                     LAMVGVGLYALFLNYSFFTYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEF
                     LPMSTRSKLEPLE"
     gene            554..778
                     /locus_tag="U0280_001863"
     CDS             554..778
                     /locus_tag="U0280_001863"
                     /EC_number="5.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HEM2271791.1"
                     /translation="MCYNEKNVDRGEKMPFVTIQFLEGRTDDQKKALVSEVTEVVAKN
                     LKAPKENIHVILEEMKKTDYGVGGVRKSDI"
     gene            complement(813..2135)
                     /locus_tag="U0280_001864"
     CDS             complement(813..2135)
                     /locus_tag="U0280_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2271792.1"
                     /translation="MSYLTEKLREEKVFKDPVHGYVHVSDKIIWDLIATKEFQRLRRI
                     HQLGTTSLTFHGAEHSRFNHSLGVYEIVRQIIDVTFANEPQLDPEERMVALCAALLHD
                     LGHGPFSHAFEKVFGTDHESYTQEIIIGDTEVNKILMRAGEEFPLKVAAIIKKNYPNQ
                     TLVKLISSQIDADRMDYLLRDAYYTGVSYGKFDLERILRVLRPSPDGNGVIVKYSGMH
                     AVEDYIMSRYQMYQQVYFHPVSRSGEVLLWKILERAKKLYCAGYEFQATPIQVLPFFL
                     NEVSLKDYIVLDDIVLMYYFSIWQEEEDPILSDLCSRFLNRRLLRYINYDPKEDAELY
                     AELKGLLEKADIDPSYYLVIDSSSDLPYDYYLPGVGSGKDPIKLLMGNGELRELSTES
                     PVVEAIGRERRTDIKLYYPLDFIESGHVEEAITERMIALIHAHSLKEK"
     gene            complement(2150..2986)
                     /locus_tag="U0280_001865"
     CDS             complement(2150..2986)
                     /locus_tag="U0280_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl-[GcvH]:protein N-lipoyltransferase"
                     /protein_id="HEM2271793.1"
                     /translation="MNIEDTLLKQDVWRFIDNTTINPAFDAIQSFATDDTLCRSVGAR
                     MAPSTVRGWVHEKTVSLGIQDSKLPDIDKGIAFLQEQGYRVVVRNSGGLAVVLDSGVL
                     NLSMVLPDAERGIAIERGYETMFTLIKDMFVDCNEVIEAKEIEDSYCPGSYDLSIQGK
                     KFAGISQRRMAKGVAVQIYLAIDGDQTTRSELIRDFYTISGKAKQTKYTFPDVNPNVM
                     GSLSDLMKNDISLNGTLVRLFNSLRHYAGELVSGTLTSEELDLFPAYYERLIARNDKV
                     LT"
     gene            complement(3304..3504)
                     /locus_tag="U0280_001866"
     CDS             complement(3304..3504)
                     /locus_tag="U0280_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271794.1"
                     /translation="MNSFWKIFFTVILGFIALNIVLDIVGITLHFLFPVLILGGIGYL
                     LYRMWGNSPKRSSRDNEDRYNW"
     gene            complement(3527..3850)
                     /locus_tag="U0280_001867"
     CDS             complement(3527..3850)
                     /locus_tag="U0280_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HEM2271795.1"
                     /translation="MKKGLFGLLAAIFVLTMVVIEFSAPIGSAANTYYVTIKNDGKEV
                     TKSKFKGYSFRESCLDNQGNSHKVNFMSTTQLKKNKQYKIVVQDNELLVQAKEINSVP
                     LASSK"
     gene            complement(4004..5665)
                     /locus_tag="U0280_001868"
     CDS             complement(4004..5665)
                     /locus_tag="U0280_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2271796.1"
                     /translation="MHKTARKMVVALSLLCLLALTACQSGNKGENEKVTSDKKSKVVN
                     IMETSGIPNASPTLADNSVSFRVINQIFEGLYRLDKNGKPALALAASEPEEKDGGKTL
                     IFKIREDANWSNGDPVTAHDFEYAWKKVVDPKTAAAYGPQMEEIVKNATQILKGEMSP
                     DELGIKALDDKTLQIELENPVPIFKELLTTGTFFPQNQAFVEKQGDRYGTKSDTLISN
                     GPYKLENWNGTNMTWDYVKNPTYWDKKNVPTKKIHVTVVKDTNAALNLYNTNKLDRVE
                     LDGEFVKQYKDDKNFHKEATGRSVYMKMNQGKDGVKTDLANLNLRRGLAMAIDKTGMV
                     NTLLANGSKALNGDVPGDIMFDPETKEDFRKQNGDLLKFDQQEATNAWKQGLKEIGKT
                     ELTLTLTSGDTSLQRKQTEFIQNQLEENLPGLTIKLKNVTNQASFQADVTQDFELLLG
                     GWGGDYQDPLTYLNLFLTNSPGNHTGFSDAKYDELVLGAKGKLSADPEKRWQALLEAE
                     QILLKDNAVLIPLYQGGRAYLQKSNLKNYTTYPIGSENYKWIEKN"
     gene            complement(5800..6414)
                     /locus_tag="U0280_001869"
     CDS             complement(5800..6414)
                     /locus_tag="U0280_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HEM2271797.1"
                     /translation="MRKVGIFPSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFM
                     QKWLGLILIPFLMIMFTGTEYYGKEKVNQESLLEFEYCFRLLLVLLTIIQMSIIVYAL
                     GYDIPTGRFSLVTAGAFMFVVAAYIQYSKKLFKFLTMIGFKKIDAWSRNLLRKITTVT
                     LNIAGTICFILALFMRNDPSYLMLAMLMTMCVIVVGSGVYLNKK"
     gene            complement(6438..7070)
                     /locus_tag="U0280_001870"
     CDS             complement(6438..7070)
                     /locus_tag="U0280_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HEM2271798.1"
                     /translation="MKIAAFDIDAQKGFTPLCPDELPVSGGDKIVPELNFMASLASLR
                     IGSKDAHPQNAVWVVDSKDEMLAELEYPNADRTWVRHCEPGTKGFELLDGLPVVTDYD
                     YFIWKGMEPDIHPYGACYHDIVEQLSTGVLEYLREQKVDLVLVGGLAFDFCVKTTVIQ
                     LSRAGFSVLVYLPATRALSEQGFDETKEQLANTEKVQLIETREELVAYCQ"
     gene            complement(7071..7595)
                     /locus_tag="U0280_001871"
     CDS             complement(7071..7595)
                     /locus_tag="U0280_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM2271799.1"
                     /translation="MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFD
                     NVDTVVMGRTTYQQIFSLTDTFPYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNI
                     DGEKIWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKGIPLFEEDREHALELEEVTRF
                     GQFAQLTYKNLEEN"
     gene            complement(7598..8596)
                     /locus_tag="U0280_001872"
     CDS             complement(7598..8596)
                     /locus_tag="U0280_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HEM2271800.1"
                     /translation="MKAVGLTRASTDFVDIEIDKPVPENHDLLVRIKAISINPVDTKQ
                     REATKLSGDEVRILGWDAVGEVVDTGSEVALFQTGQDVYFAGDVTRQGAYAEYTLIDE
                     RLVGLKPHNLNVEEAAAMPLTTITAWEALFDRLTITENDKGKSILIINGAGGVGSIAT
                     QLAAHAGLEVIATASRPETVEWTKSHGANYVINHRENIPEQLEELGFEQGVDFILCLH
                     NTSAHWDEMQEAIRPQGKICSIVELAEPVKMTLLKDKSATFSYEFMFTRSKYDTTDKI
                     RQHEILTEAAHMLDAGELTTTLNQVLSPVNAATIEEAHKIISSGKMIGKLVVKGFE"
     gene            complement(8693..8965)
                     /locus_tag="U0280_001873"
     CDS             complement(8693..8965)
                     /locus_tag="U0280_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271801.1"
                     /translation="MEEQVDLGHFLKKTFIALVAVTLVFIGVLAMFTIIGVIIAIPLL
                     KKASKMLLSKKEASDHTHSHGGKLKIKCPACHAKMKFKDSELLDEK"
     gene            complement(9014..9925)
                     /locus_tag="U0280_001874"
     CDS             complement(9014..9925)
                     /locus_tag="U0280_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2271802.1"
                     /translation="MAHNHDHAHGHNHNHAHNANKKSLFISFILIATFMVVEVIGGIM
                     TNSLALLSDAGHMLSDAVALGLSLAAFKFGEKAASSDKTYGYKRFEILAAFLNGLTLV
                     GISVFIFYEAIGRFFDPPQVIGAGMMTISVIGLLINILVAWILMKGDTSENLNMRSAF
                     LHVLGDLLGSVGAIIAALLIIFLGWNIADPIASVIVAALILVSGWRVLKDAIHILMEG
                     KPANVDTEEIKTFFQQQDGVKEVHDLHVWAITSDFNALTAHLTVCEDADRDKILADIE
                     HYLQENFSLEHSTIQLEGNHAHHHHCN"
BASE COUNT         2947 a         2152 c         1707 g         3230 t
ORIGIN      
        1 ttcaagtggt tccagcttag acctggttga cattggcaga aactccacta gtatttgata
       61 cccatcaagc ggcggtagcg gaatcaagtt aaacacaaac aagactagat ttaattgcac
      121 aaaaatcatt aaaaaagttt ccgcaacgga gccatatgta aagaaggaat aatttagaaa
      181 taaagcatat aaccccacac caaccatcgc aagtagtaaa ttacttactg gtcctgcaag
      241 cgaaacaagt atacttccaa ggcggcgttt ttttaattta aatcgattta ccggggtcgg
      301 cttagcccaa ccaaagcctg caattaatat cattagcaaa ccgaataaat caatatgtac
      361 aacggggttt aaagagagtc tcccctcatt tttagctgta tcatctccaa atgcgagagc
      421 aaccaaggcg tgtgcccatt catgaatagt aaaagcaatt aataatgtaa ctaaaacata
      481 cggtatcatt tcgagtggat acgcgagaaa actaggcata ggagcctcct ttatctttta
      541 ttgagcaatt tttatatgct ataatgaaaa aaacgttgat cgaggtgaga aaatgccatt
      601 tgttaccatt caatttttag aaggtcgtac ggacgatcaa aagaaagctt tagttagcga
      661 agtgacggaa gttgttgcca aaaatctaaa agcaccaaaa gaaaacattc atgtgatttt
      721 agaagaaatg aaaaaaacgg attacggtgt tggcggcgta aggaaatctg atatttaagt
      781 gtgtaagaag caaggcattt cgccttgctt ttttattttt cctttaacga atgcgcatgg
      841 atgagggcga tcattctctc ggtgattgct tcttccacgt gtccactttc gataaaatcg
      901 agcggataat ataatttaat atcggtccgg cgctctcgac caatcgcctc aacaaccgga
      961 gactcggtcg ataactcacg caattcccca tttcccatca atagtttaat tgggtctttg
     1021 ccacttccca ctccaggaag atagtaatca taaggtaaat cgctggaaga atcaattact
     1081 aaataataag acggatcaat atcggccttt tcaagaagtc cttttagttc tgcgtaaagt
     1141 tctgcatctt ctttcggatc gtagttaatg tatcgtagca atcttctatt caaaaagcga
     1201 ctacataaat cactcaaaat cggatcttct tcctcttgcc aaatagaaaa atagtacatc
     1261 aacacaatat catcaagcac aatataatct tttaaactca cttcatttaa aaagaatggt
     1321 agcacttgaa taggggtagc ttgaaattca tatccagcac aatataactt tttggcacgc
     1381 tcaaggattt tccataatag cacttcaccg ctacgactaa ctggatgaaa atacacttgt
     1441 tgatacattt gataacgact cataatataa tcttctaccg catgcatgcc agaatatttt
     1501 acaataacac cattgccatc tgggcttggg cgtagaactc gcaaaatccg ctctaaatca
     1561 aactttccat agctcactcc agtataatag gcatctcgca gcaaataatc cattcggtca
     1621 gcatcaatct gactcgaaat caacttcacc aatgtttgat tcggataatt tttcttaata
     1681 atagcagcaa ctttaagcgg aaattcttct cctgctctca tcaatatttt attaacttcc
     1741 gtatctccaa taattatctc ttgcgtgtat gattcatggt ccgttccaaa tactttttca
     1801 aaagcgtgag aaaatggtcc gtgacctaaa tcatgcaaaa gcgctgcaca caatgccacc
     1861 atgcgctcct ctggatccag ttgtggttca ttcgcaaatg tgacatcgat tatttgccga
     1921 acaatttcgt aaacgcctaa cgaatgatta aaacggctat gttccgcccc atgaaaagta
     1981 agtgaagttg tccccaattg atggatacgc cgcaaacgct gaaactcttt tgtagcaatc
     2041 aaatcccaaa ttatcttatc agaaacatgt acatatccat gaaccgggtc tttgaatact
     2101 ttctcttccc ttagtttctc tgttaaataa ctcatacaac ctcctcctct caagtaagca
     2161 ctttatcatt tcgggcaatt aaacgttcat aataggctgg gaaaagatct aactcttcag
     2221 acgtaagcgt accagataca agctcacctg cgtaatgccg caaactgttg aaaaggcgta
     2281 ctaacgttcc atttaaactt atatcatttt tcattaagtc cgaaagcgaa cccataacat
     2341 tcggattcac atctggaaaa gtatattttg tttgctttgc ttttccgcta atcgtataga
     2401 aatcgcggat cagttctgag cgagtagttt gatccccatc aatagctaaa taaatttgga
     2461 ccgctacccc ttttgccatt ctacgctgag aaataccagc gaattttttc ccttgaatac
     2521 taaggtcgta actaccagga caataagagt cttctatttc ttttgcttca attacctcat
     2581 tacaatctac gaacatgtct ttgataagcg taaacatcgt ttcataacca cgctcaatcg
     2641 caattccgcg ttctgcatct gggagcacca tagacaaatt aagtacccct gaatcaagga
     2701 caactgctaa accaccggaa tttctaacta caacacggta gccttgttct tgtaaaaagg
     2761 caattccttt atctatatca ggcaacttag aatcttgaat tccaagggaa actgtttttt
     2821 catgcaccca gccgcgaaca gtagatggcg ccattcttgc tccgaccgag cgacatagcg
     2881 tatcatctgt cgcaaatgat tgaatggcat cgaaagccgg attaatcgtt gtattatcaa
     2941 taaatcgcca cacatcttgt tttagtaagg tgtcttctat attcatctct atgtcctcca
     3001 tgattttctt tttgttatta tagcataccg acagcaaaat tagatgcaaa tggcttaaaa
     3061 tagccattta atcatgaata acaatttttg agcggttatt tgactttttt acgcttaatg
     3121 ttgaaaacta tggctgtaat gattgatata acaactgatt tgagaattat atcttttttc
     3181 attttcatcg cctcatttcc tcctcttatt ataacaaact taccatacaa aaaaacctaa
     3241 cttctgtaaa agaaattagg ttcaatatat ctaaaagcct agggagcttt tttagcaaat
     3301 gtattaccag ttgtagcggt cttcattgtc gcggctcgag cgttttggag aattacccca
     3361 catacgataa agcagatatc caataccacc tagtataagt actgggaata agaagtgaag
     3421 cgtgattcca acgatatcaa gtacgatatt aagtgcgata aatcctaaaa taactgtaaa
     3481 aaatattttc caaaaactat tcatgatttt ttcctctttt ctaattttat ttactacttg
     3541 caagtggaac actgtttatt tccttggctt ggacgagtaa ttcattgtct tgaacgacga
     3601 ttttgtactg tttattcttt ttaagttgtg ttgttgacat gaagttaact ttgtgactgt
     3661 ttccttgatt atctaaacac gattcccgga atgagtaccc tttaaatttt gacttggtaa
     3721 cttcttttcc atcgtttttg attgtaacgt aatatgtatt tgctgccgat ccaattggtg
     3781 ctgaaaattc aattacaacc attgttaata caaaaattgc agccagtaaa ccgaaaagtc
     3841 cctttttcat tgtttttacc gtcctttttt gttgataggt ttattataga ggagatcaaa
     3901 aaaaggaacg aacggctcta ggctgaaaat tggtacatcc taagtcttat tttctttcgg
     3961 gtataaaaat agagcctagt ttggttaact agactctttt aaattaattt ttttcaatcc
     4021 atttgtagtt ttctgaaccg attggatacg tggtgtagtt tttcaggttg cttttttgca
     4081 agtacgcgcg gccaccttgg tatagcggga taagcacggc gttatcttta agtaaaattt
     4141 gttctgcttc tagtagtgct tgccatcttt tttctgggtc tgccgaaagt ttacccttgg
     4201 ctcctaggac taattcatcg tatttagcat ccgagaagcc tgtgtggttc cccgggctgt
     4261 ttgttaagaa taggttgagg tatgtgagcg gatcttgata atcgccaccc catccaccta
     4321 gtaacagttc aaaatcttgt gtcacatctg cttggaaact cgcttggttt gtgacatttt
     4381 ttaatttgat tgttagtcca ggcagatttt cttctaattg attttggata aattctgttt
     4441 gtttgcgttg caaggacgtg tcgccacttg ttaacgtaag tgttaattcg gttttcccga
     4501 tttctttcaa gccttgcttc catgcgtttg tagcttcttg ttggtcaaac ttgagtaagt
     4561 cgccgttttg tttacggaaa tcctcttttg tctctgggtc aaacatgata tcaccgggaa
     4621 catccccgtt taatgcttta gatccatttg caagtagtgt attgaccatg ccagtcttat
     4681 cgatagccat cgctaaaccg cgacgtaagt ttaagttagc taaatccgtt ttcacgccat
     4741 ctttgccttg gttcattttc atataaacag agcgtccagt tgcttcttta tggaagtttt
     4801 tatcatcttt gtattgttta acaaattcac catcaagctc tacgcggtcc aatttatttg
     4861 tattgtataa gtttaaagcc gcattagtat cttttacaac agttacatgg atttttttag
     4921 ttggaacgtt ctttttatcc cagtaagtag gatttttaac gtaatcccat gtcatatttg
     4981 ttccattcca attttctaat ttatacgggc cgttggaaat caatgtgtcg cttttagtcc
     5041 cataacggtc accttgtttt tctacaaacg cttggttttg tgggaagaac gtgcccgtcg
     5101 ttaggagttc tttgaatatt ggcaccgggt tttctagttc gatttgtagt gttttgtcgt
     5161 ctaacgcttt gattccaagt tcatccggtg acatttcacc ttttaaaatt tgggtagcat
     5221 ttttgacgat ttcctccatt tgcggtccgt atgcagcggc tgtttttgga tccaccactt
     5281 ttttccaagc gtattcaaaa tcatgcgccg tcactgggtc gccattggac caattagcat
     5341 cttcgcgaat tttaaaaata agtgttttcc cgccatcttt ttcttcaggt tcactggcag
     5401 ctagagcgag tgccggtttc ccgtttttat ctaatcgata taatccttca aaaatttgat
     5461 tgattactcg gaaacttacg ctattgtctg cgagtgttgg acttgcattc ggaattccac
     5521 tcgtttccat gatgttaacc actttggatt tcttgtcgga tgttactttt tcattttccc
     5581 ctttattgcc agactgacat gctgtaagtg ctagtaaaca taataaactg agtgccacta
     5641 ccatttttct ggctgtttta tgcaatattt ctcctcctct tttgtaagcg ctttttgatt
     5701 acgcaaaaaa atgacggact tcctgccaaa ttcgcgcaga acttccgcca ccattataaa
     5761 ccgaaactgt atcaattgta aataaaaact gttatatttt tatttcttat taaggtaaac
     5821 tcctgaccca acaacaataa cacacatcgt catcaacatt gctagcatta agtaactggg
     5881 atcattgcgc ataaacaaag caagaataaa acagattgta ccagctatat taagtgtaac
     5941 agttgtgatt tttctaagta ggtttcttga ccatgcatcg atctttttaa aaccaatcat
     6001 cgttaaaaat ttaaagagtt ttttcgagta ttgaatgtag gccgcaacaa cgaacatgaa
     6061 tgctcctgct gtgactagag aaaatctacc agtcgggata tcgtaaccta gcgcgtatac
     6121 aataatactc atttgaatga ttgttaacag cactaacaac agtctaaaac aatattcaaa
     6181 ttccaacaaa ctctcttgat tcactttttc ttttccgtaa tattccgttc ccgtaaacat
     6241 aatcattaaa aaaggaatca gaattaagcc aagccacttt tgcataaaca tatctgggga
     6301 gaagtccgta ccgaaatgca ccgccacttc agaaggtagt agcggatata acacagcaga
     6361 aattcctact gtgaaaagaa ttatcatact aggaaatata ccaactttcc tcattcccct
     6421 cacctcttcc aatataatta ctggcaatag gcgacaagtt cctcccttgt ttcgataagt
     6481 tgcactttct cggtatttgc taattgctct ttcgtttcat caaaaccttg ttcagatagt
     6541 gcacgtgtcg ctggtaaata aactaataca gaaaagcctg ccctacttaa ctgtataacc
     6601 gtagttttca cacaaaaatc aaaagctaaa cctccaacaa gaactaaatc gactttttgt
     6661 tcccgtaaat attctagaac acctgttgaa agctgttcaa caatatcgtg gtaacaagcg
     6721 ccgtacggat gaatatccgg ctccatacct ttccaaataa agtaatcata atcagtcaca
     6781 actggtaaac catctaataa ttcaaaacct tttgtacctg gttcacagtg ccttacccaa
     6841 gtacggtctg catttggata ttcgagttca gccagcattt cgtctttgga atccactacc
     6901 catacggcat tttgcggatg ggcgtcctta ctaccaattc gaagagaagc aagacttgcc
     6961 ataaaattaa gttctggcac aattttgtct ccgcccgaaa ccggtaattc atcgggacaa
     7021 agcggcgtaa aacctttttg tgcatcaata tcaaaagcag caattttcat ttaattttcc
     7081 tccaagtttt tatacgttag ttgggcaaac tggccgaaac gagttacttc ttctagctct
     7141 agcgcgtgct ctctatcttc ttcaaagagt ggaattcctt ttcctaaaat aatgggcgca
     7201 atcgttatca caaaccgatc tatcgccttc tcttttaaaa attgttgcac taattttgcg
     7261 ccacctacaa gccagatttt ttcaccatca atgttattca gccatgtatc aacagtccca
     7321 gctacaaagt cagcatactc atcttttgtc ccagctttcg tgttggaaaa aacgtagaca
     7381 tcttttttac tgtaagggaa cgtgtcagta agcgagaaaa tttgttgata cgtcgtccgg
     7441 cccattacaa ctgtatctac gttgtcaaag aaagcttcat aacccgcatc cccttcacta
     7501 tcaatagatt ctaaccattc gacacttccg ttttcatctg caatataacc gtccaaacta
     7561 accgcgatat atagcgcaac ttgtttttca ctcattatta ctcaaatcct ttcactacta
     7621 attttccaat catttttccg gatgagataa ttttgtgagc ttcttctatt gtcgccgcgt
     7681 tcacgggtga taaaacttga tttaatgtcg ttgttaattc gcccgcatct agcatatgag
     7741 ctgcttctgt taaaatttca tgctgtctga ttttatctgt tgtatcatat ttcgaacgag
     7801 taaacatgaa ttcatagctg aaagtagcac tcttgtcttt taaaagagtc attttcactg
     7861 gctctgcaag ttctacaata gagcaaattt tcccttgtgg gcgaatcgct tcttgcatct
     7921 catcccagtg agcactcgtg ttatgcaaac ataaaataaa atcaactccc tgctcaaatc
     7981 caagttcttc cagttgttct gggatgtttt ctcggtggtt gataacatag ttcgcgccgt
     8041 ggctcttagt ccattctact gtttctgggc gtgaggccgt ggcgatgact tcaagaccag
     8101 catgtgcagc tagttgggtc gcaatagaac caacaccacc agcgccatta ataattaaaa
     8161 ttgatttacc tttatcattt tcagtaatag ttaaacgatc aaacaatgct tcccaagctg
     8221 taatagttgt cagtggcatc gcagcagctt cctctacgtt caagttatgt ggtttcaaac
     8281 caactaaccg ctcatcaatt aaagtgtatt ctgcgtacgc tccttgcctt gtgacgtcac
     8341 ctgcgaaata aacgtcttgc ccggtttgaa ataatgcaac ttcactccca gtatctacta
     8401 cttctccaac cgcatcccaa cctaaaatcc gtacttcatc tccagatagc ttcgttgctt
     8461 cacgttgttt agtatctacc ggattgatgg aaatcgcttt aattctaact agtaaatcat
     8521 ggttttctgg tactggcttg tcgatttcta tatccacaaa atccgttgac gctctcgtta
     8581 atcctacagc tttcatttga caacacctct cgtttccttt tcccgaattt cttaaaataa
     8641 tgcacattta gataaaaaag ccttctcaaa ctcactgaga aggctttaaa acttattttt
     8701 cgtcgagcaa ttcgctatct ttgaatttca tttttgcatg gcaggccggg catttgattt
     8761 tcaacttgcc accgtgtgaa tgagtatggt cgctagcttc ttttttggaa agaagcattt
     8821 tgctagcttt ttttagtagc ggtatagcga taattacacc gatgattgtg aacattgcta
     8881 gaaccccgat aaacactaag gttacggcaa ctaaagcgat aaaagttttt ttcaaaaaat
     8941 gtcctaaatc aacttgttct tccatctaaa ccaactcctc taattgatac tttaatcata
     9001 tcatgaagcg gcattaattg cagtgatgat ggtgagcgtg atttccttca agttgaatcg
     9061 tactatgttc taatgagaaa ttttcttgca aataatgctc aatatctgcc aaaatcttat
     9121 ctcggtcggc atcttcgcat acggtcaaat gagctgtaag agcattgaaa tccgaagtaa
     9181 tcgcccatac atgtaaatca tgcacttctt tgacaccgtc ttgctgttgg aaaaacgttt
     9241 tgatttcttc tgtatccaca ttcgctggtt ttccttccat caaaatatga atcgcatctt
     9301 tcagtacacg ccaaccacta actaagataa gtgccgcaac aataacactc gcaatcgggt
     9361 cagcgatatt ccagccaagg aaaataatga gtaacgcggc aataatcgca ccaacagagc
     9421 caagcaaatc tccaagcaca tgcaagaacg cactacgcat attcaaattt tcgctagtgt
     9481 cacctttcat taaaatccaa gcgaccaaaa tattaataag caatccgata acagaaatag
     9541 tcatcattcc agctccaatt acttgtggcg gatcaaagaa gcgaccaatc gcttcataga
     9601 atataaaaac agaaatccca acgagcgtta atccattaag aaatgcagct aaaatttcaa
     9661 atcttttata gccatatgtt ttatcggagc ttgctgcttt ttcgccaaat ttaaatgcag
     9721 ctaaacttaa acctagcgcc acggcgtcag agagcatgtg ccccgcatca gaaagtagcg
     9781 ccaaactatt ggtcataatt ccaccaataa cttcgactac cataaatgta gcaattagaa
     9841 taaaactgat aaataatgat tttttgttgg cattatgcgc atgattatga ttgtgtccat
     9901 gagcatgatc gtggttatgt gccatatgat tacttcccct ctgtaagtag ctaatttcct
     9961 tatatgcata tgttagcata tatacatttt aagtgcaacc attcttataa aaaaacttcc
    10021 atttttagat tcatat
//
LOCUS       DASDXX010000103         9729 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.103, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000103 DASDXX010000000
VERSION     DASDXX010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9729
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.103"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            43..1233
                     /locus_tag="U0280_001875"
     CDS             43..1233
                     /locus_tag="U0280_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2271803.1"
                     /translation="MKNKYLSTSLGLYMNYFVHGMALIIIAQNIDFLSQKWHTDLAGA
                     AGVVSSFGIGKLLAVFISGRLSDKFGRKLSVILGVFFYIIFLGGILLSPNTIIAYMFG
                     ISAGIANSFLDTGTYPALMEAYPKKAASANIIVKAFVQSGQFLLPFMIAFILANNLWY
                     GWSFIVLIVILLINLLYTLTRTFPPMTVGKPLDAAELAEEKKQKFHFSIDEICLILFG
                     FVAQTLLYIMSQWIAKYGSEVIHMTDDASRLLVSYASVGAIICVCVTFILGNRGVRTL
                     HILITYVTMTMLISFTLFAFPSEIVCIVGAFLLGYFSAGGIIQLGLTLLAEVSARGKG
                     FVTSLYTIAEGIAVFIIPLIAAAISRIDIAAIFLLNAGIALFGLALLMIVFTRKKKFA
                     RDHI"
     gene            complement(1272..2336)
                     /locus_tag="U0280_001876"
     CDS             complement(1272..2336)
                     /locus_tag="U0280_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271804.1"
                     /translation="MSAGLLWKEWRQNAWVFIFILIAFIGSEATTATNAVSMFNDNYN
                     YYQSEEFQKNNTADQQMTGNEIKNDLSLTPYDFEGNLGLFFYVFLFLGLKLTVFEKNK
                     QMDYFTFGLPYSKKQIFWHKMLIPLLLIFVLVPIIIFCRFWYIYQQIPGLYLPSVSDS
                     LMYISSFLLLYLFSYTLAVAVGNLVGEIITAGIIAIGSIVSFLYMFPGALTNLIIGFK
                     AFFTGKTIVDIDGGAVMLYNAIPTPILQGTTALSEFVILIILSIGMLTISWYAMKTAS
                     LENDGRFLMNNKFRVPILIIGSLYVTICLSGHYASFNYDQLIPTGQVISLIIKIILIL
                     VASVIAFWMLMYKWKTLRKH"
     gene            complement(2333..3211)
                     /locus_tag="U0280_001877"
     CDS             complement(2333..3211)
                     /locus_tag="U0280_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271805.1"
                     /translation="MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFR
                     TIMGFYIPDEGDVYLDEALSKNPQLKQKLFMLQDSLNCWDGYKIPTIKKFYQKTYPLF
                     DGAKFDNLLNQVNLATDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQ
                     KKIMGILLEEVEKRKLGIIISSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVK
                     IQIAFENKKIPPFLLENGKVINKYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTL
                     EDLFIYHLEELGGEKS"
     gene            complement(3201..3596)
                     /locus_tag="U0280_001878"
     CDS             complement(3201..3596)
                     /locus_tag="U0280_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271806.1"
                     /translation="MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASR
                     IGVNPNTVSKAYQELERQEVIVTVKGKGTFIANQQDKVSSPKKLAETKIKLKETILDL
                     VYLGINVEEIHRLSDEYSQDIIGGDMVEG"
     gene            complement(3688..4170)
                     /locus_tag="U0280_001879"
     CDS             complement(3688..4170)
                     /locus_tag="U0280_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM2271807.1"
                     /translation="MTDLYYDTLHFSDTELYFAATKTGLFYVGTKAEKIQSAKRSPEK
                     MNMYKEELVAYLNGELTYFTVPMDLSATPLQLEVFHALEAIPYGETRTYTEIAAQINR
                     PKAVRAVGTAIGRNPLLFIIPCHRVIGKNGKLTGYSGGIGMKESLLKLEKAKINQFSF
                     "
     gene            4316..4876
                     /locus_tag="U0280_001880"
     CDS             4316..4876
                     /locus_tag="U0280_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylphosphotriester-DNA--protein-cysteine
                     methyltransferase family protein"
                     /protein_id="HEM2271808.1"
                     /translation="MSDYYLTKKRWQAISTNDKTADGTFFYGVTSTKIFCYPSCKSRL
                     PKKENIVIFHSAEEAFSHGYRACKRCKSGGTALPDTEWITNIEMYIKENFAKPLTLQI
                     IADDCHGSPYHLHRTFKRITMITPITYLENVRISYAKMQLTSTNQSIETIGKMAGFPN
                     PSHFSTTFKRHTGLSPNQFRKTIIKN"
     gene            4898..5767
                     /locus_tag="U0280_001881"
     CDS             4898..5767
                     /locus_tag="U0280_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM2271809.1"
                     /translation="MTHVTLPILEDWEGLSLTTILQEKFHLGKKARHEIRMSQNVLLN
                     NKPLDDWNTPLFVGASLSLPVFLHDKIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPND
                     SYETDTCANAVQYYLEKTGQDANALAVHRLDQTTSGLVLFAKNKLAIAGLSWQMENRA
                     IHRTYLAAVDGTWGLVMQTINKPIGEDRHHGSRRQISPYGQPAVTHVKVLENDNEKNT
                     SLVECQIETGRTHQIRVHLSGIGHPIIGDTLYGGSPRANRIMLHAEKLHLNHPFKGKE
                     MNFSAPAGDDWVF"
     gene            complement(5780..6172)
                     /locus_tag="U0280_001882"
     CDS             complement(5780..6172)
                     /locus_tag="U0280_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2271810.1"
                     /translation="MLHHVEIYVADLEESRLFWSGLLEELSYELYQTWNEGFSYKFAD
                     TYLVFVQTEEPFVAEGYHRKRVGLNHLAFHGGTKERVDDFRAKLKAKGTKLLYEERYP
                     FAGGENHYAVFFEDPNGIKVEICTEVTT"
     gene            complement(6174..6830)
                     /locus_tag="U0280_001883"
     CDS             complement(6174..6830)
                     /locus_tag="U0280_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM2271811.1"
                     /translation="MTDIQMVFRANRSLIDAPPMEAYMKNQFTFLGIRAGERKKLVAE
                     YLKENGAPQDLLGFTIALFAEEEREFQYVAIDLLSRYGKKQPSEAIKVYEQLIVTKSW
                     WDTVDGLAGTVVSNHFKLYPELIPTYNEAWINGDNIWLARTAILFQLKYKEETDVDLL
                     FSNCEKWLDSKEFFIQKAIGWALRQYAKVDSGAVRQFVNSHSLAPLSRREALKHIGEA
                     "
     gene            complement(6827..7711)
                     /locus_tag="U0280_001884"
     CDS             complement(6827..7711)
                     /locus_tag="U0280_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2271812.1"
                     /translation="MTKTLQDRMILPGNETIPYIGLGVFQVTEQEFIAGAVEKAIEVG
                     YRLFDTAAVYNNEAIVGQAIASSAVSREELFISSKVWNGDLGFDETLFAFERTLRNLK
                     LDYLDLYLIHWPVAGKYRDSWRAMERLHDEKLIKSIGVANFKQHHLSDLLVAANEKPV
                     LNQVETHPLLPQNDLRKYLAEQNIAHAAWSPLAKGILMQNPVITEIAKKHQASVDQVI
                     LQWHLNRNTIIFPKSITSSRIEENSRLSYFQLDAIDMEKIDRLETGKRVGPDPDDLEY
                     FLSSIERERAYLSGENAE"
     gene            8098..8718
                     /locus_tag="U0280_001885"
     CDS             8098..8718
                     /locus_tag="U0280_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HEM2271813.1"
                     /translation="MAFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSN
                     KIKEYETAGDSMVHKMIMELNDAFITPIEREDMLELTNRLDDVMDALDETAFSLEICQ
                     ITHYDEYMTKFIQAIQASTVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRES
                     LIQLFQNEKDPIKLIRLREVYEKLEDIADSCQSVANTLESIVMKNA"
     gene            8732..>9729
                     /locus_tag="U0280_001886"
     CDS             8732..>9729
                     /locus_tag="U0280_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEM2271814.1"
                     /translation="MEGMFLITLVIVLAALAFDLINGFHDTANAIATSVSTKALKPRH
                     AIILAAVMNFVGAISFTGVAKTITKDIVNPFDLDHGELVILAALLSAIAWNLITWYFG
                     IPSSSSHALIGSIAGAAIASAGFAAIEYSGFTKIIVGLLVSPVLAFVVGYTIYSLFKV
                     FLKNLNLATTNRRFRMIQVGTAALQSYTHGTNDAQKSMGIITMALIASGFQTTDDVQL
                     WVQVSCAIAMAIGTSIGGWKIIKTVGGKIMKIKPVNGVAADLSSVIIIFGATFIHLPV
                     STTHVISSSILGVGTAHRVKGVKWDTAQRMIITWVITLPISATIAALIFYVLRFIL"
BASE COUNT         2992 a         1948 c         1605 g         3184 t
ORIGIN      
        1 ataaaaagtc ctcataagtc attacataaa ggagagcaga ctatgaaaaa caaatattta
       61 tctacatcac ttggtcttta tatgaactac tttgttcatg gtatggcgtt aatcatcatt
      121 gcacaaaata ttgatttttt atctcaaaaa tggcatacag atttggctgg tgctgccggc
      181 gttgtatctt cctttgggat tggtaaatta ttagctgtat ttatttcggg aagactatcc
      241 gataaattcg gtagaaagtt gtctgttatt ctcggcgtgt ttttctatat tatcttttta
      301 ggcggtatat tactcagtcc caatacgatt atcgcataca tgtttggtat ttctgctggg
      361 atagcaaatt ccttcttaga tacaggaacc taccccgccc ttatggaagc ttatccaaaa
      421 aaagctgctt ctgctaatat cattgttaaa gctttcgttc aatctggtca attcctttta
      481 ccattcatga ttgcatttat tttagcaaat aacttatggt atggctggag ctttattgta
      541 ttgatcgtta ttttactaat taacttactc tatacattaa cgcgaacttt cccgccgatg
      601 actgttggaa aaccactaga tgcagcagaa cttgccgaag agaaaaagca aaagtttcat
      661 tttagtatag atgaaatttg tttgatttta tttggttttg tggcccaaac gcttctttat
      721 attatgagcc aatggatcgc taagtatggt tcagaagtta ttcatatgac agacgatgct
      781 tctagactac ttgtaagtta tgctagtgtc ggagcgatta tttgtgtgtg tgtgacgttt
      841 attttaggaa atcgcggcgt gcgaacgctc catatcttaa ttacttatgt aaccatgacg
      901 atgctcatct cctttacact gtttgctttc ccaagcgaaa tcgtatgtat tgttggggct
      961 ttcttattgg gctatttctc tgctggagga attatccaat taggtttaac actacttgcg
     1021 gaggtttctg ctcgaggaaa gggttttgtc actagccttt atactattgc agaagggata
     1081 gctgttttca ttatcccctt gattgctgct gcgatttccc gaattgatat tgccgctatc
     1141 ttcttactaa atgctggtat tgcgcttttc ggcctcgctc tcttaatgat tgtatttaca
     1201 agaaagaaaa aatttgctcg agatcatatt taaaaaagac cgagaattga ttcctcaatt
     1261 ctcggtcttt tttaatgttt ccgtaacgtc ttccatttgt acatgagcat ccaaaaagca
     1321 ataacagatg caactaaaat cagtataatt ttaattatta aacttataac ttgtcccgtc
     1381 ggaattaatt gatcgtaatt aaaacttgca taatggccac ttaaacaaat agtcacataa
     1441 agagaaccaa tgataagtat agggacccgg aatttattat tcattaaaaa tctaccatcg
     1501 ttttccaaag aagctgtttt catcgcatac cagctaatgg ttaacattcc tattgataag
     1561 ataattaata tgacaaattc acttaacgct gtagttcctt gtaaaattgg cgtaggtatt
     1621 gcgttataca gcataactgc tccaccatca atatccacta ttgtttttcc agtaaagaaa
     1681 gctttaaaac caatgattaa attagtcaat gcgcctggaa acatgtataa aaagctaaca
     1741 atagatccaa tcgctataat tccggctgta attatctctc caaccaaatt cccgactgcc
     1801 actgctaacg tgtaagaaaa taaatacaat aacaaaaagg aactaatata catcaaagaa
     1861 tcgctcacac tgggtaaata caaccccggt atttgctggt aaatatacca aaacctacag
     1921 aaaatgatga ttggtactag tacgaaaatt aaaagtaatg gaataagcat cttatgccaa
     1981 aaaatttgct tcttggagta tggcaatcca aaagtaaaat aatccatttg cttatttttc
     2041 tcaaaaacag ttaactttaa ccctaaaaac agaaacacat agaagaaaag ccctaaattc
     2101 ccttcaaaat cataaggagt taaacttaaa tcatttttta tttcattacc cgtcatttgt
     2161 tgatctgctg tattattttt ttgaaattct tcagactgat aatagttata gttgtcatta
     2221 aacatactaa ccgcgttcgt tgcagtcgta gcttcagaac ctataaaagc gattaaaata
     2281 aatataaata cccacgcatt ctgacgccat tctttccaaa gaagccctgc actcatgatt
     2341 tctcgcctcc tagttcttct agatgataaa taaacaagtc ttctaatgtg actgcgagtt
     2401 catccatgaa aattggtttt tcttttttta ttgctgcgta taattctgtg ttcatatctc
     2461 ggaataaaat ggtgtaaaca cggccatact tattaattac tttgccattt tccagtaaaa
     2521 aaggtggaat ttttttattt tcaaaagcga tctgaatttt aacagcttgt tcccgaagtg
     2581 attcaagatg gtaagactct tcaatatgat tatcttgtaa aatatgaata tagtcagcaa
     2641 tcggatctaa atcagctaaa cgatgggaag aaataataat gcctaatttc cgcttctcca
     2701 cttcttctaa taatatgccc ataattttct tttgagcaat tatatcgaga ccttccattg
     2761 gttcatcgag caaaataaat tcagctccga tagatagggc aagaacgagc ccaaaaagac
     2821 ctttcattcc ttttgaataa ttttgaaatt ttacatctgt agctaggtta acttgattga
     2881 gtaagttatc aaatttagct ccgtcgaata atggataagt tttttgatag aattttttta
     2941 tcgtcggaat cttataacca tcccaacaat ttaaactatc ttgaagcatg aataattttt
     3001 gctttaattg agggtttttg cttaatgcct catctaagta cacatctccc tcatcaggaa
     3061 tataaaaacc cataatagtt cgaaaaagag ttgttttacc tacgccattt cgtccgacta
     3121 taccaataat ttctcctggc tttacttcaa atgttatttt atccaataag agttccccgt
     3181 caattttttt gctaagtgaa tcaaccttca accatgtcac ctccaatgat gtcttgacta
     3241 tattcgtctg ataatctatg tatttcttca acgttaattc caaggtaaac taaatcgaga
     3301 atcgtttctt ttaatttaat ttttgtttct gctagttttt ttggtgaact tactttatct
     3361 tgttggttcg ctatgaaggt cccttttcct tttaccgtga caattacttc ttgtcgttct
     3421 aattcttggt acgctttact cacagtgttt gggttcactc cgattctact tgcaaattca
     3481 cgtatagata atatcttttc tccttcttga agtatccctt tgacaacttg ttctttaatt
     3541 ttttggacga tctgttcata aatcggtagt tgactttttg tgttaatcgt aaacatctct
     3601 ccccctgctt tcatgaattc tactatagag aactaattgt actagttact atagtacagt
     3661 agataaaaaa ataaatcaat tctcttttta aaaagaaaat tgatttattt ttgctttttc
     3721 aagttttaag agtgattctt tcatccctat ccccccgcta taacctgtta atttgccatt
     3781 tttaccaatt actctgtggc atggaataat gaaaagtagt gggtttcttc cgattgccgt
     3841 tccaactgcg cgcacggctt tggggcgatt tatctgtgct gcaatttctg tatacgttct
     3901 agtttctcca taaggaatag cttccaatgc gtgaaatact tcaagttgga gaggagtagc
     3961 ggacaaatcc attggtacag taaaatacgt aagttctccg ttcaaataag cgaccaattc
     4021 ttctttatac atgttcattt tttctgggct tcgcttggct gattgaatct tttctgcctt
     4081 tgttccaacg taaaatagcc cagttttcgt cgctgcgaaa taaagctctg tgtctgaaaa
     4141 atgaagcgta tcataatata aatctgtcat ttccttcacc tctttctaat gttaattata
     4201 cgctaaattg aataacattt ctaaccagtt tcactataag agcaagatta gaaaagtttt
     4261 cctcgcaatt taccttcata acgtttatga ttaataagaa gttgaggtga taacattgtc
     4321 ggattattac ttaaccaaaa aaagatggca agcaatttca acgaatgata agactgctga
     4381 tggcacattt ttctatggtg ttacatctac gaagattttt tgctatcctt cttgtaaatc
     4441 acgattacca aaaaaagaaa acatcgttat tttccatagt gcggaggaag ctttttcgca
     4501 tggctaccgg gcttgtaaac gatgtaaatc tggtggtact gcgctacctg atacggagtg
     4561 gataacaaat atcgaaatgt atattaaaga aaattttgcc aaaccgctca ctttacaaat
     4621 cattgcggat gattgccacg gaagtccgta ccacttacac cgaacattta agcgaatcac
     4681 gatgattaca cccattactt accttgagaa cgtccggatt agttacgcaa aaatgcagct
     4741 aacctcgacc aaccaatcca ttgaaactat tggaaaaatg gctggctttc caaacccctc
     4801 tcatttttct actacattta aaagacatac cggtttgtca ccaaaccaat ttcgaaaaac
     4861 aataataaaa aattaaatta gaacggatga tttgactatg acacatgtaa cattacctat
     4921 tttagaagac tgggaaggcc tttcactaac tactattttg caagaaaaat ttcatctcgg
     4981 taaaaaagcg cgacatgaaa ttcgcatgtc tcaaaatgtt ttgctaaaca ataagccact
     5041 ggatgattgg aatacgccac ttttcgttgg agcgagtctt tctttaccag ttttcttaca
     5101 tgacaaaatc cctgtctatg agtacgactt agaaattatt tatgaagatg attttttact
     5161 agtagtgaat aaaccagttg atatgaaaac tcacccaaat gatagttatg aaacagatac
     5221 ttgcgcgaat gccgtgcaat attacttaga aaaaacaggc caagatgcga acgccctagc
     5281 agttcaccgt cttgatcaaa ctacttccgg tttagtactg tttgctaaaa acaaattagc
     5341 tatcgccggc ttatcttggc aaatggaaaa tagagcgatt caccggactt atctcgctgc
     5401 agttgatggt acttggggac tcgtgatgca aacaatcaac aaaccaattg gcgaagatcg
     5461 tcaccacggt tccagacgcc aaatcagccc atacggtcaa ccagcagtaa cgcatgttaa
     5521 agtattagaa aatgataacg aaaaaaacac ctctcttgta gaatgccaaa tcgaaactgg
     5581 tcggacgcac caaattcgcg ttcatttaag cggaattggc catccaatta ttggcgatac
     5641 gctttatggt ggttcccctc gtgctaatcg catcatgcta catgccgaaa aattacattt
     5701 aaatcatcct ttcaaaggta aagaaatgaa tttttctgct ccagctggag atgattgggt
     5761 attttaaaaa gccacaacat tacgttgtga cttctgtaca aatttctact tttattccat
     5821 ttggatcttc aaaaaataca gcataatgat tttcaccgcc agcaaaagga tatctttctt
     5881 catatagaag tttggttcct tttgctttta atttggctcg aaaatcatcc acccgttctt
     5941 ttgtgccacc atgaaatgcc aaatgattga gcccaactcg tttgcgatga taaccttccg
     6001 cgacaaacgg ttcctctgtt tgcacaaata ctaaatacgt atcggcgaat ttataactaa
     6061 agccttcatt ccaagtctgg tataactcat aagaaagttc ttctaacagc cctgaccaaa
     6121 acaagcgact ttcttctaaa tcagctacat atatttccac atgatgtaac atatcacgcc
     6181 tccccgatgt gtttaagtgc ttctcttcgg cttaacggcg caagcgagtg actatttaca
     6241 aactgacgaa ctgccccgct atcgactttt gcatattgtc tgagcgccca tccaatcgct
     6301 ttttgaataa agaattcttt ggaatccagc catttttcgc aattggaaaa aagtaaatct
     6361 acatcggttt cttctttgta cttcaattga aataaaattg ccgttcgagc gagccaaatg
     6421 ttatctccat ttatccacgc ttcattatag gtaggaatca actcaggata tagtttaaaa
     6481 tgattactta ctaccgttcc cgctaggcca tccacagtat cccaccaaga tttcgttaca
     6541 attaattgct catatacttt tatcgcctca ctaggctgtt ttttaccgta acggcttaat
     6601 aaatcaatcg ccacatactg aaattcacgc tcttcttcag caaataaggc tatcgtaaat
     6661 ccaagtaaat cttgcggcgc cccattttct ttcaaatatt ccgctaccaa tttttttcgt
     6721 tcaccggctc taattcccaa aaaagtaaat tgatttttca tgtaagcttc cattggcgga
     6781 gcatctatta aagaacgatt cgcgcggaat accatttgaa tatctgtcat tccgcattct
     6841 cacctgataa ataagcgcgt tcccgttcaa tactacttaa aaagtattct aaatcatctg
     6901 gatctggtcc aacacgtttc cccgtttcta agcgatcaat tttttccata tcaatggcat
     6961 ctagttggaa ataggacaaa cgtgaattct cctcaatccg actagaagta attgacttcg
     7021 gaaaaataat cgtattgcgg ttcaaatgcc attgtaaaat cacttgatct acagatgctt
     7081 gatgtttttt cgcaatttct gtaatcaccg gattttgcat taatattcct ttagccagcg
     7141 gtgaccaggc agcgtgcgcg atattctgtt ccgccaaata cttacgaagg tcattttgcg
     7201 gtaacagtgg atgcgtttcc acttgattta aaactggttt ttcatttgca gcaaccaata
     7261 agtcacttaa atgatgttgc ttgaaattcg caactccaat agatttaatc aatttttcgt
     7321 catgaagccg ctccatcgct cgccatgaat cacggtattt cccagctaca ggccaatgaa
     7381 ttaaatacaa atccaaataa tccaacttca aattccgaag tgttcgctca aaagcaaata
     7441 acgtttcatc aaagccaagg tctccgttcc acactttcga actaataaat aattcttctc
     7501 gtgagactgc gctactagca attgcttgcc caacaatcgc ttcattatta taaactgccg
     7561 ctgtatcaaa caaacgataa cctacttcaa ttgccttttc cacagcacca gcgataaatt
     7621 cttgttctgt tacttgaaat acaccaagtc caatataagg aattgtctca ttccccggta
     7681 gtatcattct gtcttgtaat gtttttgtca aaacgaaacc ctcctcacga aaactgtttt
     7741 gtgaactttt tctcttaaat gaattataca ctattttcgc aaatttatat tttaaaacca
     7801 gtataccgaa atgcgcctta ctctcctaat aaaaagccac aaaaattcta ctttttttat
     7861 tcatttaatg aaatacctaa aaacagccat tggaaacgct gtcagaacgt ttatttgcag
     7921 agccgtcaaa aaaaagtttc ctatttattc ccatcctatg ttagtattaa tttgtggtaa
     7981 agatctatca agttttttat ttgttttcgt taacttatcg ttaagaaaaa agctcccttt
     8041 tcaaagtaaa agcgagctga ttattaatga ccaaaaatga tcgggggaat taagaaaatg
     8101 gcttttaaaa ataaaaaaga ccgttttgct tcgttgttgc atgacattgc agtaaattta
     8161 catgaaggtg caaatttctt tgcaacttac aacattaatt cggtggagga tttacatact
     8221 ttctcgaata aaatcaaaga atatgaaaca gctggagact ccatggttca caaaatgatt
     8281 atggaattaa acgacgcttt cattacacca atcgaacgtg aggacatgtt agaacttact
     8341 aaccgcttag acgacgtaat ggatgcactt gatgaaacag ctttctcact agaaatctgc
     8401 caaatcactc attatgatga atacatgact aaatttatcc aagctattca agcaagcact
     8461 gttgaaattg aaaaagcagt tgaccttgtt tttgataaaa aactaaaaga cgttcgtaaa
     8521 cttgcgattc aaattaaaga ttacgaatct caatgtgatg atgtttaccg cgaatcacta
     8581 atccaacttt tccaaaacga aaaagatcca attaaactaa ttcgcctaag agaagtttat
     8641 gaaaaattag aagacattgc tgatagttgt caaagcgttg cgaatacgct tgaatcaatt
     8701 gtcatgaaaa atgcgtaagg ggcctagata gatggaagga atgtttctca tcaccctcgt
     8761 catcgtactt gccgcgctag catttgacct gatcaatggg tttcatgata cagctaacgc
     8821 aattgcgact agtgtctcta caaaagcctt aaaaccacga catgcgatta ttcttgctgc
     8881 cgtaatgaac tttgtgggtg ctatttcatt cacaggggtt gctaaaacaa ttacaaaaga
     8941 cattgttaac ccattcgact tagatcacgg cgaacttgtt attttagcag cattactttc
     9001 agctattgct tggaacttaa tcacttggta tttcggaatt cctagtagtt cctcccatgc
     9061 cttgattgga tccatcgccg gtgcagccat tgcatcagcc ggatttgcag caattgaata
     9121 cagcggattt actaaaatca ttgttggttt attagtatct cctgtacttg ctttcgtagt
     9181 cggttacacg atatattcac tcttcaaggt tttcctgaag aacttaaact tagccacgac
     9241 caatcggcgc ttccggatga ttcaagtcgg aactgctgcg ctacaatctt acacacacgg
     9301 aactaatgat gcacaaaaat caatggggat tatcacaatg gcattaattg ctagtggttt
     9361 ccaaacaacc gatgatgtgc aattatgggt tcaagtatcc tgtgcgattg ccatggcgat
     9421 tggtacgagt attggtggtt ggaaaatcat caaaactgtt ggcggtaaaa tcatgaaaat
     9481 caaaccagtt aatggtgtag cggctgattt aagttccgtt atcattattt tcggtgctac
     9541 tttcattcat ttaccagtta gtacaacaca cgtaatcagc tcttctatcc ttggtgttgg
     9601 aacagctcac cgtgtcaaag gtgtcaaatg ggatactgcc caacgtatga ttattacttg
     9661 ggttatcaca cttcctattt cagcaacaat tgcagcactt atcttctatg tactaagatt
     9721 tattcttta
//
LOCUS       DASDXX010000104         9427 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.104, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000104 DASDXX010000000
VERSION     DASDXX010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9427
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.104"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(56..373)
                     /locus_tag="U0280_001887"
     CDS             complement(56..373)
                     /locus_tag="U0280_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComG"
                     /protein_id="HEM2271815.1"
                     /translation="MKTNAFTLPFTIFIALISILIVTGTASIFKTQIQYEKMIQNYYL
                     ASTKLNLAFIEIKETSSLSHQFKINFKGAKIDCQATDNQLTEFNCQITLENGYTLAKT
                     TSP"
     gene            complement(370..837)
                     /locus_tag="U0280_001888"
     CDS             complement(370..837)
                     /locus_tag="U0280_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComGF family competence protein"
                     /protein_id="HEM2271816.1"
                     /translation="MQKINRKKNVSFRNGSPAFTLLETILSITIILSISSLIPLFFQC
                     YNKTIQISNIDQTTEWQLFLIQTRLELEKATNIQIDRNKLSFSNGKDLITYSKYNDLV
                     RRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP"
     gene            complement(800..1084)
                     /locus_tag="U0280_001889"
     CDS             complement(800..1084)
                     /locus_tag="U0280_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM2271817.1"
                     /translation="MNKINGFSLVESMVSLLLFSMVCSFLLPTAMTIFEKLDYQKETS
                     RVYQEIYEHSELLRHKSVPVNFKDERIESFHYQGGIQICAKNKSEEKCIF"
     gene            complement(1077..1499)
                     /locus_tag="U0280_001890"
     CDS             complement(1077..1499)
                     /locus_tag="U0280_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM2271818.1"
                     /translation="MKINGFTLLEMLLVLTISFTLITLTIFPISSTLSTLREKQLLEE
                     IKATIYYAQINAVATKQDTFISFDPMRNQLITYTNSKTLAILPFSQTLTLTQPKIGNF
                     RFSSTDGSINRFSTIHLTSSTNNYKLIFQIGKGRFRIE"
     gene            complement(1496..1819)
                     /locus_tag="U0280_001891"
     CDS             complement(1496..1819)
                     /locus_tag="U0280_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM2271819.1"
                     /translation="MFKKKIDWRDERGFTLVEMLIVLLVVSVLLLLTIPNIVSQSKSI
                     NDKGCEAFISMVQGQVQSYQLDKNSIPSVADLVSGGYLKANQKTCPNGNSIKIDSSGN
                     VSEKK"
     gene            complement(1834..2865)
                     /locus_tag="U0280_001892"
     CDS             complement(1834..2865)
                     /locus_tag="U0280_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM2271820.1"
                     /translation="MVFFQRTNWKEDGEFLIRVASLLEKGFSLDATISYLSITSPKYR
                     KRYEQIITSLANGNSFSYALSKNGFPEFICSQLHYASSHGYFLQTIHETGVHMKRKAE
                     EKNALMKTFQYPLVLFSTVILVFFLLRIFLLPKFELLFTQLSTNGTVGTKFTYFLLEK
                     IPVLLGIFLLSLFLIFSFLIRKQKQKNAYDRAYFYCRIPYIRQFSRIHYSQYLSRELG
                     YLLKSGLSITHIMHLFAQEESPAFFQAIARQILPTLEQGLSLTKALEKMPIFERELYY
                     IAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIYLSILY
                     PMFSMVNQI"
     gene            complement(2843..3865)
                     /locus_tag="U0280_001893"
     CDS             complement(2843..3865)
                     /locus_tag="U0280_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEM2271821.1"
                     /translation="MPQKMTEHIITQALRVHASDVHIHPLSNRYLLRLRVNGTLIPLL
                     YLPIDVGEKLISFLKFQAALDISEKRRPQSGSFEKNTNTEKIAIRLSTMPSKDFHESM
                     VIRIFRYKYPIPFLKSSVFPRSTNQIQQQCKNQTGLFLFSGSTGSGKSSSMYSLVSSI
                     ENKDELQIITIEDPVEHHSPGFLQIEVNEKASITYAPIIRSVLRHDPDILIIGEIRDA
                     ETAKIVVRAALTGHLVLSTVHAGDAYGVLLRLLEFGISSEELAQCLLGISFQKLTHLV
                     CTFCGEKCHPLCTHLHRKRTAIYEVLTQQEIKAYFQSNKQQIKPKYPIKRTFEKGVAY
                     GFFSAH"
     regulatory      4229..4320
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            4404..5492
                     /gene="gcvT"
                     /locus_tag="U0280_001894"
     CDS             4404..5492
                     /gene="gcvT"
                     /locus_tag="U0280_001894"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEM2271822.1"
                     /translation="MTELLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEAVRT
                     DAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVV
                     YKKSETEYILVVNAANTDKDFEWMVKNIRGDVSVTNVSSEYGQLALQGPSAEKILAKL
                     TDVDLSSISFFGFVEDADVAGVKTIISRSGYTGEDGFEIYMPSADAGKVFEAILAEGV
                     APIGLGARDTLRLEAVLALYGQELSKDITPLEAGLNFAVKLKKEADFIGKEALIKQKE
                     AGLNRKLVGIELIERGIPRHDYPVFLNEEEIGIVTSGTQSPTLGTNIGLALIDTAYTE
                     IGQEVEVGIRNKKIKAKIVPTPFYKRAK"
     gene            5508..6854
                     /gene="gcvPA"
                     /locus_tag="U0280_001895"
     CDS             5508..6854
                     /gene="gcvPA"
                     /locus_tag="U0280_001895"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HEM2271823.1"
                     /translation="MAKHRYLPMTEQDEKEMLDVIGVKSIDDLFQDIPEKIRFKRDYD
                     LKPAKSEPALLRELSKLASKNANTTEYASFLGAGVYSHYIPTVVDHVISRSEFYTAYT
                     PYQPEISQGELQAIFEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKIL
                     ISGAVHPESSNVLKTYATGQHIEVEVIPELDGKTDIEALKKALSDDIAGFVVQYPNFY
                     GQVEPLAELEKLVHENNSLLLVSSNPLSLGLLTPPGEFGADIVVGDSQVFGIPESFGG
                     PHCGFFAVTNKLMRKVPGRLVGETVDENGKRGYVLTLQAREQHIRRDKATSNICSNQA
                     LNALASSVAMATLGKTGLVEMAKQNLDKSHYAKQKFREKGFEVLFSDGFFNEFVVKLS
                     KPIKEVNESLLDEGIIGGYDLGFYEEKYENHMLVAVTEMRTKEEIDAFVASLEGAK"
     gene            6851..8317
                     /gene="gcvPB"
                     /locus_tag="U0280_001896"
     CDS             6851..8317
                     /gene="gcvPB"
                     /locus_tag="U0280_001896"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HEM2271824.1"
                     /translation="MNLEETMPLVFERSIPGRIGFSLPESDVPETKASDYFEQAYIRS
                     VPADLPELSELEIMRHYTNLSNHNFGVDSGFYPLGSCTMKYNPKINEKVARFPGFANI
                     HPNQPESSVQGALELLYDLQTSLVEITGMDEVTLQPAAGAHGEWTGLMLIRAFHEKNG
                     DTKRTKVIIPDSAHGTNPASAAVAGFDVVTVKSNEKGLVDVADLKKVVGEDTAALMLT
                     NPNTLGLFEKDIVEMAEIVHEAGGKLYYDGANLNAIMAKVRPGDMGFDVVHLNLHKTF
                     TGPHGGGGPGSGPIGVKKELIPFLPTPVLTKKEEGYTFDYNYPDSIGRVKPYYGNFGI
                     NVRAYTYIRTMGPDGLKLVTEYAVLNANYMMRKLQEAYDLPFDQVCKHEFVLSGNRQK
                     KLGVRTVDIAKRLLDHNFHPPTVYFPLIVGEAIMIEPTETESKETLDSFIDTMLKIAK
                     EAEENPEIVQEAPHSTYVKRLDETRAARKPILRYQKEV"
     gene            complement(8358..8738)
                     /locus_tag="U0280_001897"
     CDS             complement(8358..8738)
                     /locus_tag="U0280_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM2271825.1"
                     /translation="MISWIIAIIILVILLGYEIYQFVMRRKAVKVLTEEEFKKGYRKA
                     QLIDVREPNEFDAGHILGARNIPVTQMKNRTTEIRQDLPVYLYCQTAQRSNRAAIMLY
                     KRGYKQVYQLKGGYRKWTGKTKSK"
     gene            complement(8800..9072)
                     /locus_tag="U0280_001898"
     CDS             complement(8800..9072)
                     /locus_tag="U0280_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271826.1"
                     /translation="MKKYPLIVIILLALVGIGLLMGGFKSFFTLIISVLIGALIFTLL
                     LRFFTNRKTDSNYQKAVKQSKNLHDPKKKTKKKRKSSFKVIDGGKK"
     gene            complement(9085..>9427)
                     /locus_tag="U0280_001899"
     CDS             complement(9085..>9427)
                     /locus_tag="U0280_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HEM2271827.1"
                     /translation="GSSFILFTVIVGMFIYLLVPTDPLWLRVVDRILLIPVVLGVAFE
                     VLQLTNKCRNIPVLKYLGVPGLWLQLLTTKEPSDDQVEVAIASFNELLRVEKEGAPVD
                     VAEPENLELLE"
BASE COUNT         3101 a         1536 c         1855 g         2935 t
ORIGIN      
        1 tgtataattt aattaataca ccaactaaat ctttttaaaa caacgagttc cttctttaag
       61 ggctcgttgt ttttgctaat gtatagccgt tttctagtgt gatttgacag ttgaattctg
      121 ttagttgatt atccgtcgcc tggcaatcta tctttgcgcc tttgaaattt attttaaatt
      181 gatgtgaaag tgaggatgtt tccttaattt ctatgaaagc taaatttagt ttagtggagg
      241 ctaaataata attttgaatc attttttcat attgtatttg tgtcttaaag atagaagcag
      301 taccagtaac gattaaaatt gaaataagcg caatgaaaat ggtaaatggg agcgtaaatg
      361 cattagtctt catggattgg ataccacttc tggtaatgcg aatacagatg tatatatctg
      421 agtattagag tcttgcaccg ttaaatgaag ttgtttttct ttcttgatta attgataatc
      481 tttcacatta gtaagcaatg gttcatgtcc ttttccattt acttgtcgac gaactaaatc
      541 attatatttg gaataggtga taagatcttt gccattacta aaagaaagct tattcctatc
      601 aatctgaata ttagtcgctt tttctaattc tagacgagtt tgaatgagaa aaagttgcca
      661 ttctgttgtc tgatcaatgt tactaatctg gatagtcttg ttatagcatt gaaaaaataa
      721 tggaatgagc gagctaatac ttaaaatgat cgtaatagac aagattgttt caagaagagt
      781 gaaagcaggt gagccatttc taaaagatac atttttcttc cgatttattt tttgcacaaa
      841 tttggatacc tccttgataa tggaaacttt cgatacgttc atccttaaag ttaactggaa
      901 cgcttttgtg ccgtaatagt tcgctatgtt cgtaaatttc ttgatagact ctgctagttt
      961 ctttttgata gtctagtttt tcaaaaatag tcattgctgt gggtaataga aaactacaaa
     1021 ccattgaaaa aaggagaagt gaaaccatgc tttcaactaa agagaatccg ttaattttat
     1081 tcaattctaa aacgcccctt tccgatttga aatattagct tgtagttatt tgtcgaactt
     1141 gtcaggtgaa ttgttgaaaa acgattaatg gatccatctg tactcgagaa acgaaaattt
     1201 cctatttttg gttgtgttaa agttaacgtc tgtgagaatg gaaggatagc aagtgttttt
     1261 gagttagtat atgtgatgag ttggtttctc attggatcaa atgaaataaa cgtatcttgc
     1321 tttgttgcta cagcatttat ttgcgcatag taaatggtgg cttttatttc ttctagtagt
     1381 tgtttctccc taagcgtgga taatgtactt gaaataggaa agatggttaa tgtgattagt
     1441 gtaaagctga tagttagtac aagtaacatt tctaataaag taaatccatt tattttcatt
     1501 ttttctcaga aacatttcct gagctatcta tcttgatact atttccatta ggacaagttt
     1561 tttggttagc ttttagataa cctccactta ctaaatcagc tacagaaggg attgaatttt
     1621 tatctaattg gtaggactga acttgacctt gaaccattga aataaaggcc tcgcatcctt
     1681 tatcgttgat tgacttactt tgtgatacta tgttgggaat agtaaggagt aacaaaacac
     1741 taaccactaa caatacaatt aacatctcca ccaaagtaaa gcctcgctca tctcgccaat
     1801 caattttctt tttaaacatt aaaactcctc cttttaaatt tgatttacca tagaaaacat
     1861 gggatataaa atggataaat aaatggatac aattaaaata ccaataacga taaaaacaat
     1921 tggttggata aatgaaaata atttttcggt cttttgaagt gatttctgat gacataagtt
     1981 ataataaaat aaaaattctt ctgctaaatt accatttttt tcaccgtgga tagcaatgta
     2041 ataaagttct ctttcaaata taggcatttt ttctagtgct tttgttagtg ataatccttg
     2101 ttcaagcgta ggaaggattt gcctggcgat tgcttgaaag aatgcgggcg attcttcttg
     2161 cgcgaagagg tgcataatat gcgttataga taaaccgctt ttcagcagat atccaagttc
     2221 gcgcgaaagg tattgcgaat aatgaattct tgaaaattgg cgaatatatg gaattcgaca
     2281 ataaaaataa gctcggtcgt aagcattttt ttgcttttgt tttcgaataa ggaaactgaa
     2341 gattagaaaa aggctaagta aaaaaattcc taataaaact ggaatttttt caagcaggaa
     2401 ataagtgaat ttagttccga ctgtgccgtt agttgataat tgtgtaaata aaagttcgaa
     2461 tttaggtaag agaaaaattc gaagcaagaa gaacaccaga ataacagtag agaataagac
     2521 tagtggatat tggaaggtct tcattaatgc gtttttttcc tccgcttttc ttttcatatg
     2581 gacgccggtt tcgtgaattg tttgcaaaaa gtaaccgtga ctagaagcat aatgaagttg
     2641 tgaacaaatg aattcaggaa atccgttttt tgaaagagca taggaaaaag aatttccgtt
     2701 tgcaagtgaa gtgataattt gttcatatct tttgcgatat ttgggcgaag taatgcttaa
     2761 atagctaatg gtcgcatcta atgagaatcc cttttcgagt aaactggcaa ctctaattaa
     2821 aaattctccg tcctctttcc aattagtgcg ctgaaaaaaa accataggca actcctttct
     2881 cgaatgttct tttaataggg tatttaggct taatctgctg tttattagat tggaaatagg
     2941 cttttatctc ttgttgcgta agaacttcat agatagctgt tctttttcgg tgcaaatgtg
     3001 tacaaagggg atggcatttt tctccgcaga aggtgcaaac taggtgtgtc agcttctgaa
     3061 aactgattcc tagtaagcat tgcgctaatt cttctgagct aataccgaat tcaagtaatc
     3121 ttaataaaac tccgtaagca tctccggcat gaaccgtgct taaaactaag tgaccggtta
     3181 atgcagcacg aacaactatt ttagcggttt ctgcatcgcg tatttccccg ataattaaaa
     3241 tatcaggatc atggcgtaag acggagcgaa tgatgggtgc ataggtaatg cttgcttttt
     3301 cgttcacttc gatttggaga aagccgggag aatgatgttc aacaggatct tcaattgtaa
     3361 tgatttgcag ttcatcttta ttttctatag aagaaacaag gctatacata gaactggact
     3421 taccactacc tgtgctaccg gaaaaaagaa acaagcctgt ttggttttta cactgttgtt
     3481 gaatttgatt agtggatcta ggaaaaacac tagattttaa aaatgggata gggtacttgt
     3541 aacgaaaaat tcgaatgacc atgctttcat gaaaatcttt gctaggcata gtagaaagcc
     3601 gtatagcaat tttttctgtg tttgtatttt tttcaaagct accagattga ggtcgtcttt
     3661 tttcgcttat atccaaagct gcttggaatt taagaaaaga tattaacttt tcccctacat
     3721 ctattggaag gtaaagaagc ggaatcaatg tcccgtttac ccgaagacgg agtaagtaac
     3781 ggtttgagag tggatgaata tgaacatcac ttgcatggac acgtaatgct tgagttatga
     3841 tgtgttctgt cattttttgc ggcataagaa cctccttaca agtcatattc ctcaaaagta
     3901 aacaaaatcc tttgtgtccc aatctttcac aaaaacgaaa atagtatttt ctaaatgcaa
     3961 aagtagcatt tcaagctaaa ataatattga aagtggtatt ttagaagcaa ataagtgaat
     4021 aaaaaatttt tttcgatttt gatgattttc acaatctatg tgcaatgaat aacaagcgta
     4081 taattaaacg gtaatatcgc aataaagccc ttacattccg aaccaatatc aaaaataaag
     4141 aaaatttaag ctttaaaact aattatttgc cgaacaatac aactcatgat aagctataga
     4201 aaaggcaaat acataataga attagcgggt gaatgtaagc agagagactg cgaaaagcgg
     4261 cgccgacggg gaaagcatgt attatgtgaa actctcaggc aaaaggatgt ttacgggacg
     4321 caactctgga gtcatttttg tgttacgaca gggcttatga accatataag cctttttgtt
     4381 atgtgaaaaa ggaggatata attatgacag agttactaaa aacaccgatt catccacttt
     4441 atgcaaaata tggtgcgaaa accattgatt ttggtggatg ggatttaccg gtacaatttg
     4501 ctggtataaa agcagaacat gaggccgtgc gaactgatgc agggctattt gatgtgtctc
     4561 acatgggaga aattctagta aaaggaccgg atagtacttc ttatttacag tatttgttaa
     4621 ccaatgacat tgaaaaaata aaaatcggaa aagcacaata taatattatg tgctatgaaa
     4681 ctggtggaac agtggacgat ttagtagttt acaagaaatc agaaacggaa tacatacttg
     4741 ttgtcaatgc agcaaatacg gacaaggatt ttgaatggat ggttaaaaat attcgcgggg
     4801 atgtttctgt taccaatgta tcttcggaat atggacaatt agcacttcaa gggccaagcg
     4861 cagaaaaaat tctcgcaaaa ctaacggatg tagatttaag ttcgattagc ttctttggat
     4921 ttgtggagga tgcggatgta gcaggagtga aaacaatcat ttcaagaagt ggctatactg
     4981 gagaagatgg atttgaaatt tatatgccaa gcgctgatgc aggaaaagtt tttgaggcaa
     5041 ttttagctga aggagtagct ccaattggtt taggtgcacg ggatacattg cgcttagagg
     5101 cggtacttgc gctttatggg caagaattga gcaaggacat tacaccactt gaagcagggc
     5161 ttaattttgc tgttaaatta aaaaaagaag cagattttat aggtaaagaa gcgcttatta
     5221 aacaaaaaga agcagggctg aatagaaaac tagttggtat tgaattaatt gaacgaggta
     5281 ttccgcgtca cgattatcca gtatttctaa atgaggaaga aattggcatt gtgacttctg
     5341 gtacccaatc acccacactt ggaacaaata ttggtcttgc tctaattgat acagcttaca
     5401 cagaaatagg tcaagaagta gaagtaggta taagaaacaa aaaaataaaa gcgaaaatag
     5461 taccaacacc attttataaa cgcgcaaagt aaaaaggagg aagtaatatg gcaaaacatc
     5521 gttatttacc aatgacagag caagatgaaa aggaaatgct tgatgtaata ggggttaagt
     5581 caattgatga cttatttcaa gatattccag aaaaaattag atttaaacga gattatgatt
     5641 taaaaccagc aaaatctgaa cctgcacttt tacgcgaatt atcgaaactt gcttctaaaa
     5701 atgctaatac tactgaatat gcgtcttttt taggggctgg agtttatagt cattacattc
     5761 caactgtagt cgatcatgtt atttctcgct cagaatttta tacagcatat acgccttatc
     5821 aacctgaaat ttctcaagga gagttgcagg caatctttga attccaaacg atgattgcgg
     5881 aacttactgg aatggacttg gctaattcct ctatgtatga tggtggaaca gcgcttgcag
     5941 aagcagcgat gctagcaagt ggacatacaa agcgcaaaaa aattctcatt tccggagctg
     6001 ttcacccgga aagtagcaat gttttaaaaa cctatgcaac tggccaacac attgaagtag
     6061 aagttattcc agaactagat ggaaaaacag acattgaggc gctaaaaaaa gctctttcag
     6121 atgatattgc gggttttgtt gtacaatatc caaacttcta tggacaagtg gaacctttgg
     6181 ctgaacttga aaaattagtg catgaaaata attctttatt acttgtatcg agcaatccgt
     6241 tgtctctagg tttgttaaca ccaccaggag aatttggtgc agatattgtt gtgggtgatt
     6301 cgcaagtatt tggtatccca gaatcatttg gtggaccgca ttgtggattc tttgcagtaa
     6361 caaataaatt aatgcgtaaa gttcctggac gtttagttgg ggaaaccgta gacgagaacg
     6421 ggaagcgcgg gtatgtacta acattacaag cacgcgaaca acatattcgc cgtgataaag
     6481 cgacgtctaa tatttgttcc aatcaagcat tgaatgcatt agcttcttct gtcgcaatgg
     6541 caacccttgg aaaaacaggt cttgtagaaa tggcaaaaca aaacttagat aaatctcatt
     6601 atgccaaaca aaaattccgt gaaaaaggct ttgaagttct attttcagat ggctttttca
     6661 atgaatttgt tgtaaaactt tcgaaaccaa tcaaagaagt gaatgaatca cttttagatg
     6721 aagggattat tggtgggtat gaccttggtt tttatgagga aaaatatgaa aaccatatgc
     6781 ttgtagctgt tactgaaatg cggacaaaag aggaaattga tgcctttgtg gcgagcttgg
     6841 agggtgcaaa atgaatttag aagaaacgat gccattagtg tttgaacgtt ctattccagg
     6901 aagaattggc tttagtttac cagaaagcga tgttccagaa acaaaagcca gtgattattt
     6961 tgaacaagcg tatattcgtt ctgtaccagc agatttgcct gaattaagcg agcttgaaat
     7021 catgcgtcat tataccaatt tatccaatca taactttggt gttgattctg gtttttatcc
     7081 gcttggctct tgtacgatga aatataaccc aaaaatcaat gaaaaagttg cacgctttcc
     7141 tggtttcgct aatatccatc caaaccaacc agaaagctct gtccaaggcg cgctagaact
     7201 actgtatgat ttgcaaacaa gcttagttga aattacagga atggatgaag taacgctaca
     7261 accagctgct ggagcacacg gagaatggac gggattaatg ctcattcgtg cattccatga
     7321 aaagaatggg gatacaaaac gcacaaaagt aatcatccca gactctgcac atggaacaaa
     7381 ccctgcatct gcagcagtag cgggcttcga tgttgtgacg gtgaaatcga atgaaaaagg
     7441 acttgtcgat gtagctgatt tgaaaaaagt agtaggcgaa gacacggccg cactaatgct
     7501 cacaaaccca aatacacttg gtctttttga aaaagatatt gttgaaatgg cggaaattgt
     7561 tcatgaagct ggcgggaaat tgtactatga tggtgccaat ttaaatgcta ttatggcgaa
     7621 agttagacca ggagacatgg gctttgatgt tgttcatttg aatttacaca aaacatttac
     7681 tggtcctcac ggtggtggcg gtcctggttc tggcccaatt ggcgtgaaaa aggaattaat
     7741 accattctta ccaacaccag tccttacgaa aaaagaagaa ggatacacgt ttgattataa
     7801 ctatcctgac tctattggac gagtgaaacc ttattatggc aacttcggca tcaatgttcg
     7861 cgcgtatacg tatattcgca caatgggtcc ggatggcttg aaattggtga cagaatatgc
     7921 cgttttaaat gccaactata tgatgcgtaa actgcaagaa gcctatgatt taccatttga
     7981 tcaagtttgt aaacacgaat ttgttttaag tggtaataga cagaagaaac ttggcgtaag
     8041 aactgttgat attgcgaaac gattgctaga tcacaatttc catccgccaa cagtttattt
     8101 tccgctaatt gttggtgaag caatcatgat tgaaccgact gaaacagaat cgaaagaaac
     8161 tctagattct ttcattgata cgatgttaaa aattgcgaaa gaagcggaag aaaatcctga
     8221 aatcgtccaa gaagcgccac atagcaccta tgtgaaacga ctagacgaaa cacgcgctgc
     8281 tagaaaaccg attttacgtt atcaaaaaga agtataaaaa gaagccttgt tgcgaaactt
     8341 cgcagcaagg ctttttctta tttagattta gtttttcctg tccatttacg gtagccgcct
     8401 ttaagctgat aaacttgttt gtatccgcgt ttataaagca taattgctgc acggttacta
     8461 cgttgtgctg tttggcagta taagtaaact ggtaaatctt gacgaatttc tgttgtccgg
     8521 tttttcattt gtgtaactgg gatatttcta gctccaagaa tatgtccagc atcgaattca
     8581 tttggctcgc gaacatcaat taactgtgct ttacgataac cttttttaaa ttcttcttct
     8641 gttaaaactt ttactgcttt gcgacgcatt acaaactggt aaatttcgta tcctagaaga
     8701 ataaccagaa tgataattgc tataatccaa ctaatcaatt gtgtaaaccc ctttcatcct
     8761 gaaaactgct ttttttaaag catccttttc tattataact tattttttgc caccatcaat
     8821 cactttgaaa gaagattttc gttttttctt cgtttttttc ttcggatcat gtaaattttt
     8881 cgattgtttt actgcttttt ggtaattact gtcagttttt ctatttgtga aaaaccgcag
     8941 tagaagggtg aaaataagtg ccccgattaa tacggaaata attaaggtga aaaatgattt
     9001 aaaaccaccc attaaaagcc caataccaac aagcgcaagt aaaataataa ctatgagggg
     9061 atacttcttc aaattaatcc actcctattc taaaagttcc agattctccg gttccgctac
     9121 atctactggt gcaccttctt tttccactcg taaaagctca ttaaaggatg caatggcaac
     9181 ctcaacttga tcatcagacg gttcttttgt tgtaagaagt tgtagccata aacccgggac
     9241 acctaaatat ttaagaactg ggatattacg gcatttatta gttaattgaa gtacttcaaa
     9301 agctacacca agtacgacag gaataagtaa aatccggtcg accacacgaa gccaaagagg
     9361 atcagttggt actaacaaat aaataaacat accaacaata actgtaaata aaataaaact
     9421 actacca
//
LOCUS       DASDXX010000105         9381 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.105, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000105 DASDXX010000000
VERSION     DASDXX010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9381
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.105"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(436..903)
                     /locus_tag="U0280_001900"
     CDS             complement(436..903)
                     /locus_tag="U0280_001900"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEM2271828.1"
                     /translation="MAEKMNVESFNLDHTKVKAPFVRLAGTKVGVHGDEIYKYDVRFK
                     QPNKEHMEMPALHSLEHLMAELARNHTDKLVDISPMGCQTGFYVSFINHSDYDDALEI
                     IATTLTDVLAATEVPACNEVQCGWAASHSLEGAKALAAEFLDKRDEWKNVFGE"
     gene            complement(987..3446)
                     /gene="parC"
                     /locus_tag="U0280_001901"
     CDS             complement(987..3446)
                     /gene="parC"
                     /locus_tag="U0280_001901"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEM2271829.1"
                     /translation="MSNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPV
                     QRRILFAMNVEGNTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNML
                     IEMHGNNGSVDGDPPAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLP
                     ARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFP
                     TGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRM
                     DELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMV
                     AINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV
                     IKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQI
                     SVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIV
                     SVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPV
                     HELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAIT
                     NYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGART
                     AGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLML
                     RELKSNPHRFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEG
                     EPTSIWLAIPEIKDTSDAKDE"
     gene            complement(3443..5410)
                     /gene="parE"
                     /locus_tag="U0280_001902"
     CDS             complement(3443..5410)
                     /gene="parE"
                     /locus_tag="U0280_001902"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEM2271830.1"
                     /translation="MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIV
                     DNSVDETLAGFGKKIVVTLHVDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGK
                     FGQEGGYKTSGGLHGVGSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGK
                     SKATGTTIRFKPDPAIFPTTSFNYETLSERLRESAFLLKGMLIELIDERVGMAEAFHF
                     EEGVKNFVEYINEGKDVLHPVASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRG
                     AGSHESGMKAAMTRIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFE
                     GQTKEKLGTQEARQAVDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREE
                     TRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLR
                     GKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHI
                     QVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIG
                     KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDSARAERRVATLMGDKVEPRR
                     QWIEKHVEFSMEDSQNILENENMMVEEAKDI"
     gene            complement(5591..5998)
                     /locus_tag="U0280_001903"
     CDS             complement(5591..5998)
                     /locus_tag="U0280_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEM2271831.1"
                     /translation="MQNPTKEEIQQILKKAKVIAVIGLSDKPDRTSYRVSQIMQQAGY
                     KIIPVNPNADEILGEKAVKRLTDIKEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQ
                     LGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD"
     gene            6156..6752
                     /gene="plsY"
                     /locus_tag="U0280_001904"
     CDS             6156..6752
                     /gene="plsY"
                     /locus_tag="U0280_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEM2271832.1"
                     /translation="MTINLILLSLLAYVIGSIPSGLWIGKIFYKKDIRDFGSGNLGAT
                     NSFRVLGIKAGSIVTVMDILKGTVATLLPFFFQLNVDHHFWLLTGAFAIIGHSFPLFA
                     GFRGGKAVATSAGVILAYAPLLFVAALVVFLVTLKLSKYVSLSSMIGALAALIISLFM
                     GDWILIILVACIALFVIWRHRANITRIRNGEEPKIKWM"
     gene            complement(6794..7666)
                     /locus_tag="U0280_001905"
     CDS             complement(6794..7666)
                     /locus_tag="U0280_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM2271833.1"
                     /translation="MIKLENEVLLVEMKTAGAELTRIFHKDTGLEYLWNADSKFWGRH
                     SPVLFPTVGRLVEDTYLVDGKPYHLGQHGFARDRDFQVIEQTEKSVRFELDADEDSLA
                     VYPYKFKLSIIYTIEKNTVAVSYEVENTDNKRIYFSIGAHPAFNLPLTDGTTFEDYYL
                     DFGTEENLETLCLEGPYRSGEIKKVVDKPAQYLPLSYDLFKNDALIFEALKQKEMTIK
                     SDKTPHFVKVSFPEFPFVGVWTAKPGTPFLCIEPWYGIADGAGESVELRDKAGIEHLE
                     PEAVFASEYEITVG"
     gene            complement(7669..7980)
                     /locus_tag="U0280_001906"
     CDS             complement(7669..7980)
                     /locus_tag="U0280_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271834.1"
                     /translation="MAFGVKRDEMELWKEKAARGEIAIITHYWLDDRFPESKTVTKVA
                     CVDLKKLQQWGKQYGLAPDWIDNRRKNFPHYDLFGEMQLVVLKKEKAFEQIERFHLEE
                     K"
     gene            complement(8003..8422)
                     /locus_tag="U0280_001907"
     CDS             complement(8003..8422)
                     /locus_tag="U0280_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEM2271835.1"
                     /translation="MEIAETTIEVRYAETDQMGVVYHNNYLVWMEIGRTRLIEKLGFR
                     YFDMEEAGYLSPVLDVHIHYVKPLRYGQKAVVKTWIKGYDGLRVTYGYEICYEDTNEV
                     AITGETQHVCVTKEDFRPVSLRRTFPNWHEAYLKALE"
     gene            complement(8526..9305)
                     /gene="codY"
                     /locus_tag="U0280_001908"
     CDS             complement(8526..9305)
                     /gene="codY"
                     /locus_tag="U0280_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HEM2271836.1"
                     /translation="MTLLEKTRKINAMLQNAAGKTVNFKEMADTLTDVIEANTYIVSR
                     KGKLLGYSEALPIENDRMKQMLTERQFPEEYTQSLFNVGETSSNLEVSSQYTAFPIEN
                     SELFTKGLTTIVPIVGGGERLGTLILSRLESNFTDDDLLLAEYGGTVVGMEILHEKAE
                     EIEEEARSRAVVQMAISSLSYSELEAIEHIFDELNGKEGLLVASKIADRVGITRSVIV
                     NALRKLESAGVIDSRSLGMKGTFIRVLNDKFLVELEKLKNN"
BASE COUNT         2538 a         1958 c         1607 g         3278 t
ORIGIN      
        1 cggtttttat ttggcattta aactagtaaa aaaaagggct atttttgtcg aatttttgtc
       61 gaaatgaaat cataatattt ttataagcta ttttatagat aaaaaactat ccactcgaga
      121 attttgagta gatagttttt tatttatttt tacgaataat tataataact atgaatccta
      181 ccactgcgat agttgttggt actaattttt ctgtttgcgt tgatttgact atactagttt
      241 tcaaaacaga gatggctgta tctccagaac attagaatca gatagactga tctgggcaaa
      301 tcacaaaaaa tacaagtgat tgcatggcaa gtctccgtta gtattccata cgacatttaa
      361 attcgttatt aattttgata aaaatatgtt atttataaaa agcatctacc gatattccga
      421 tagatgcttt catttttatt caccaaatac atttttccat tcgtctcgtt tgtctaaaaa
      481 ttctgctgca agcgcttttg caccttctaa actatggctt gctgcccaac cgcattggac
      541 ttcattgcat gcaggaactt ctgtcgcagc taaaacatcc gttagtgttg tggcgatgat
      601 ttctagtgca tcatcatagt cgctatgatt aatgaaggaa acataaaagc cagtttggca
      661 tcccattgga ctaatgtcta ctaatttgtc agtatgattt cttgcaagtt ctgccatcaa
      721 atgttctaaa gagtgtagcg ctggcatttc catatgttct ttattgggtt gtttgaagcg
      781 aacatcatat ttgtatattt catctccatg gacgcccact ttcgttcccg ccagtctcac
      841 aaaaggtgct tttactttcg tatggtccaa attaaaactt tctacattca ttttttctgc
      901 catgcgtatc cctcctctta ttctttgtta ttatatcaaa aaaaaagaat ccttgcatat
      961 ttctatacaa gaactctttt tcttccttat tcatcttttg catctgaggt atcttttatt
     1021 tcgggtattg ctagccaaat agaagttggt tcgccttcca ttgtttcatc gagtacgaag
     1081 gatccgttag aatagcgatc cgttattcgt agattggcaa cgtctatttc aacaatttgg
     1141 tctgtgtttg tttcgataaa taggtggtcg ttattatcag caagagttat accaatgaag
     1201 cgatgtggat tgcttttcag ttcgcgtaac atcaataagc cacgtttcgc tcttgagatt
     1261 ggttcaaatt cgcttgcttt catttgtttg agtgagccac gttgtgtggc aagaagaata
     1321 tgtttttgtt cgttcggcat aaggactata ccgccaataa ctatatcatc ttgttttaag
     1381 ttaatcgctt ttacacccgc tgttcttgca cctgattctg gaatttcagt aatagaataa
     1441 cgaaggccgt aaccattttt tgttgctaag aaaatatctt ctgtgccatc aatcaaatga
     1501 acatttaaca gctcatcgtc accttttaat ttaattgcca tcatggattt agaatagcgt
     1561 tgtggtttgt aattcgtaat agctgattgc ttggtcatgc cgtttttagt aacgaataaa
     1621 aagcgttttt cttccgtaaa ggcttgaatt gcaatagcag aacggatttc ttcacctgcc
     1681 gataaatcac tggccaagtg acttacgtga tctccgaggt ttttccagcg aatatctggc
     1741 aactcatgta ctggtcgata aatgaaattc cctttgctcg tgaataacag gagcgaatca
     1801 agtgaattca ttttttggat aaagatggca tggtctgctt ctttcatggc tagttccgca
     1861 ccgtttgatg ctgcataaga acgttggctc gtacgtttca catagccttc ttttgtcaca
     1921 gaaacaatca catcttcatt cgcaacaagt acttctgtat cgattttgat ttctgtaatt
     1981 tctgcttgca cttctgtacg gcgagcagtt ttatattttt tcttaatttc cgctagctct
     2041 tcttttaaca cagcgataag ctctgcttca tcacctagga ttttttcaag aacactaatt
     2101 tgttctgcta aggattttgc ttcactttga agttcatgta tatctgtatt tgttaaacga
     2161 taaagttgta aagatacaat tgcttctgct tgtttttcgc tgaaatcata ttttgtttga
     2221 agatttagtt ttgcatcgcg tttgtctttt gaaccacgaa ttaatttaat gacttcatct
     2281 aaaatagaca aagctttaat taaaccttct aaaatatgtt ggcgagcgcg cgctttacga
     2341 atatcgtatt cagagcgctt cgtaataatt tctttttggt gttcaatata agcgtcaagc
     2401 attgggataa tgcccattag ctccggacgt tttttattaa tagcaaccat gttaaaatta
     2461 tagcttactt gtaaatctgt atttttaaac aggtagttca aaacaccttc agcattggca
     2521 tcttttttta gttcaacagc aatacgaagt cctgtgcggt cggtttcatc acgtacttct
     2581 gaaatacctt caattttttt ctcaattcga agttcatcca tgcgtttaac taaattagct
     2641 ttatttactt catatggaat ttcatgaatt gtaatttgtt ttctaccgcc acgaatatct
     2701 tcaatttctg ttttagaacg aacgacaacg cgtccttttc cagtttgata agcttttcga
     2761 ataccatcaa tcccttgaat aatcccacct gttgggaaat ctggaccttt gacaattttc
     2821 ataatatcat ccgttgtgga aagtgggtta tctaatcgtt taataacagc ttcgatgatc
     2881 tctgttaaat tatgcggcgg aatatctgtt gcataaccag cggagatacc ggtagaacca
     2941 ttcactaaaa ggtttggaaa acgtgctggt aaaacagttg gctcactaga tgtgtcatca
     3001 aagttaggaa taaagtcaac tgtttccttt tcaatatcgc gtaaaagttc tgctgatata
     3061 ggagaaaggc gagcttctgt ataacgcatt gctgcaggcg gatccccgtc gacactaccg
     3121 ttattaccat gcatttcaat cagcatatta cgtactttcc agtcttgact catccgtacc
     3181 attgcttcgt aaactgaaga gtcaccatgt ggatggtagt taccaataac gtttccgacc
     3241 gttttagcag atttacggaa acctttctca gcagtatttc cttcgacatt catcgcgaat
     3301 aaaatacgac gttgtacagg tttcagtccg tcacgaacat ctggaagcgc acgttcttga
     3361 ataatatatt tactatatct accaaaacgg tcgcccataa cttcttctag cgctaagtct
     3421 tggatatgtt gttctggatt actcaaatgt ctttcgcctc ctcaaccatc atgttttcat
     3481 tttctaaaat attttggcta tcttccatag aaaactcgac atgcttttca atccattgtc
     3541 gtcttggttc tactttgtcg cccatcagtg tggccacgcg gcgttcagcg cgtgcagaat
     3601 catctacccg tacacgaatt aacgtgcgcg tatcaggatt catcgttgtt tcccaaagtt
     3661 ggtcagcatt catctcacca agacctttgt atcgttgaat catgtagcct ttaccaattt
     3721 tttggatggc agagtctaat tcttcatctg tccaagcata ttcgattact tcttttttac
     3781 cagaaccacg gcttactttg taaagtggtg gtaaggcaat aaatacttta cctgcttcca
     3841 ctagtgggcg catataacga tagaaaaagg ttaatagtaa tacttgaatg tgtgcgccat
     3901 cggtatcggc atcggtcatg ataactactt tgtcatagtt acaatcttct acatcgaact
     3961 ccgtaccaac tcccgcacca actgtatgga taatcgtact aatttcttca tttttcaaga
     4021 tatcttgtag tttggctttt tctgtattga ttacttttcc tcgaagtggc aaaattgctt
     4081 ggaaacgacg gtcacgacct tgtttagctg atccccccgc cgagtcacct tcgactaggt
     4141 aaagttcatt tttattagga tttcgcgatt gtgccggtgt taattttcca gaaagaagtg
     4201 tttcggaacg tttctttttc ttgccgttac gtgtttcttc gcgcgctttt ctggcagctt
     4261 ctcttgcttc gcgggcttta acagcctttt taactagaag agagcttgtt tctgggtttt
     4321 cggcaaggaa gtaagctaaa tgttctgcta caactgcatc aaccgcctga cgagcttcct
     4381 gcgtccctag tttttctttc gtttgacctt cgaattgaag gattttttct ggaacacgga
     4441 tagaaagtac agctgataaa ccttcacgaa tatcgctacc ttcaaggttt ttatcttttt
     4501 cttttaaaag attcacacga cgagcataat cattgaaaat ccgcgtcatt gccgctttca
     4561 ttccagattc atgcgagcct gctccgcgag ttcgaacgtt attaacgaaa ctcaagatat
     4621 tttcagaata accatcattg aattggaacg ccatttctac ttcaatggtc gcattttccc
     4681 cttcaaagct agctacagga tgaagcacat ctttaccttc attaatatat tcaacaaagt
     4741 ttttcacacc ttcttcaaag tggaaagcct ctgccatgcc aactcgttca tcaattaatt
     4801 caattaacat cccttttaaa agaaatgctg attctcttag acgttctgat aaggtttcat
     4861 agttaaatga agtcgttgga aaaattgctg gatctggctt aaagcgaatc gttgtcccag
     4921 tagcttttga ttttccgatt tttttcagtg ttccatctgg ctttccgccg tctttaaatt
     4981 tttgttggta ggttgcgccg tcacgattaa ttgtaactac taaccattca gagagcgcat
     5041 ttacaacgga tgaaccaaca ccgtgaagcc caccacttgt tttatatccg ccttcttggc
     5101 cgaacttacc accggcgtga agaacagtta aaataacttc taccgtagac ttacctgttt
     5161 tgtgcatccc aacaggcatc ccacgacctt catcgctaac actaacactg ccatccacgt
     5221 gaagtgtcac aacaattttc ttaccaaaac ctgcaagggt ctcatcgacc gagttgtcca
     5281 ctatttcata tactaaatgg tgcagcccgc gtacatctgt tgaaccgata tacatcgctg
     5341 ggcgtttccg gaccgcttcc agtccttcaa gcacctgaat agaatcatca ttatactcat
     5401 tccgattcat atttcaaaac tcccttcatt ccgtcaatct acaactttca cgttgttatt
     5461 cgcttaaaac cactttatca gaatagcatt aactagctga ttaataaagt gatagtttag
     5521 tgacaaattc cttttcataa aaaaacaggc tctgctataa gaacctgctt ccttcaaaaa
     5581 tggtgtttaa ttaatccatt tcttgataag caaccttaat gcaataatcc atgacagtag
     5641 gatatccttt ttctgtcaaa aaatcaaatg cttcctgatt agctatgcca agctgtgccc
     5701 aaaatacatc tgcatctatt tggtcaaaag cctccgctat ttcaggtaaa aactctgagc
     5761 gacgaaagac attcacaata tccacatgtt ccttgatatc cgttaaacgc ttgacggctt
     5821 tttcgccaag aatttcgtct gcattagggt tcactggtat aattttgtac ccagcttgct
     5881 gcattatttg actcactcgg taacttgtgc ggtctggttt atcactcaaa ccaatgactg
     5941 cgattacttt tgccttcttt aagatttgct ggatttcttc ttttgttgga ttttgcatta
     6001 gtctaatcgc cccctactat tctttctaat cataagctat ttttgcggtt ttttcaactt
     6061 ttcatcgtga tttgtcctaa caatttagcc aatcttcttc attttgtgct ataattcttt
     6121 atggaaaaca tcatttcttc ttgaggggtt taaaaatgac aattaattta attctgcttt
     6181 ctttattagc ctatgtgatt ggttcgatac cgtctggttt atggattggc aaaatttttt
     6241 acaaaaagga tattcgcgat ttcggtagtg gtaatttagg cgcgacgaat tcattccggg
     6301 ttctcggaat caaagccggt agtatcgtga cagtgatgga cattttaaaa gggactgtcg
     6361 caacgttgct tccatttttc tttcaattga atgtagacca tcatttttgg ttgctaactg
     6421 gagcatttgc tattattggg catagtttcc cgcttttcgc aggatttaga ggcggaaaag
     6481 cagttgctac ttcggcaggt gtcatccttg cctatgcacc attactcttt gtagccgcac
     6541 ttgtagtctt cttagttaca cttaaactta gcaaatatgt atcgctcagc tcgatgattg
     6601 gagcacttgc agcgttaatt atttctcttt tcatgggaga ctggatttta attattcttg
     6661 ttgcttgtat cgcactcttt gtcatctggc gtcaccgagc aaatatcact cggattcgta
     6721 acggcgaaga acccaaaata aaatggatgt aataaaaccc agaagatgca tttcgctctt
     6781 ctgggttttc gttttaacct actgtaattt catattcgga agcaaagaca gcttctggct
     6841 ctaaatgctc tattcccgct ttatctcgca gttcaacaga ttctccagca ccatctgcaa
     6901 ttccgtacca cggttcaata cataagaaag gggtccccgg ttttgccgtc caaacaccta
     6961 caaatgggaa ttctgggaaa gatactttta caaaatgagg tgttttatct gatttgatgg
     7021 tcatttcttt ttgttttagt gcttcaaaaa taagtgcatc gtttttaaat aaatcatagc
     7081 tcagtggtaa gtattgtgct ggtttatcga caaccttctt aatttcgcca ctgcggtatg
     7141 gcccttctaa acaaagtgtt tctaaattct cttctgttcc gaaatccaaa taataatctt
     7201 caaatgtcgt cccgtctgtt aatggtaaat taaaagctgg gtgcgcacca atagagaaat
     7261 aaattcgctt gttatccgta ttttcaactt cgtaggaaac agctaccgta tttttttcta
     7321 ttgtataaat aatcgatagt ttaaatttgt agggataaac tgctaatgaa tcttcgtctg
     7381 catccaactc aaaacgtacc gatttttctg tttgctcgat tacttgaaaa tcacggtcac
     7441 gggcaaaccc gtgttgccct aagtggtacg gctttccatc gactaagtaa gtatcttcta
     7501 caagccttcc aactgttgga aatagaacag gtgaatgacg cccccaaaac ttgctatcag
     7561 cattccataa atactcaagt ccggtatctt tatggaagat tcgcgttaat tctgctccag
     7621 ctgttttcat ttctacaagc aatacttcat tttccagttt aatcattgtt atttctcctc
     7681 caaatgaaac cgctcgattt gttcaaaggc tttttctttt ttcagtacaa cgagttgcat
     7741 ctcgccaaac aaatcataat gcggaaagtt ttttcgacgg ttatcaatcc aatctggggc
     7801 taaaccatat tgtttccccc attgttgtag ttttttcaaa tctacacatg caactttggt
     7861 tacagttttt gattcaggaa aacgatcatc tagccaataa tgggtgataa ttgcaatctc
     7921 tccacgggct gctttttctt tccataactc catttcatca cgttttacac caaaagccat
     7981 tttttatcac taccagtctt atttattcta aagcttttag ataggcttca tgccaattcg
     8041 gaaatgttct tcttaacgat acagggcgga aatcttcttt cgttacacat acatgctgtg
     8101 tttctcctgt aatggctact tcattcgtat cttcatagca aatttcataa ccataagtaa
     8161 cacgaagtcc atcataccct tttatccatg tttttacaac tgccttctgt ccgtaacgca
     8221 gtggttttac gtaatgaata tgcacatcta ataccggaga aagataacca gcctcttcca
     8281 tatcaaaata acgaaaacct aatttttcaa ttaatcttgt tcggccgatt tccatccata
     8341 caaggtaatt gttatgataa acaacgccca tttgatcggt ttctgcatag cgtacttcaa
     8401 tggttgtttc agcgatttcc attctaaatt cctccagtca cacaagttct actttcttat
     8461 tttaccaaag caaaccaaaa aaagctctcc ccgaatattt tcagagaaag cttttctact
     8521 tttttttagt tgtttttcaa tttttctagt tctacaagga atttatcatt aagtacacgg
     8581 ataaatgtac ctttcattcc tagtgagcga gaatcaataa cgcctgcact ttctaattta
     8641 cgaagtgcat ttacgattac agaacgtgta atgccgacac ggtccgcgat tttagaggca
     8701 acaagaagac cttctttacc attcaactca tcgaaaatat gctcaatagc ttctaactca
     8761 ctgtaagaaa gagagctaat cgccatttgc acaacggcac ggctacgagc ttcttcttca
     8821 atttcttctg ctttttcatg caagatttcc attccaacaa ctgttccacc atattccgct
     8881 aaaagtaaat catcatcagt gaaattgctt tctaagcgag ataggataag tgttccaaga
     8941 cgctcaccac cacctacgat aggtacgata gttgttaaac cttttgtgaa taattcactg
     9001 ttttcgattg gaaaagcagt atattggctt gatacttcta agttagaaga agtttcgcct
     9061 acattgaaaa ggctttgcgt atattcttct ggaaattggc gttctgttag catttgtttc
     9121 atacgatcat tttcgattgg aagtgcttca gaatagccaa gtaatttacc tttacggctt
     9181 acgatatatg tgtttgcttc aatgacatct gtaagtgtat ctgccatttc tttgaagttt
     9241 actgtttttc ctgcagcatt ttgtaacata gcattaattt ttcttgtttt ttctaataaa
     9301 gtcattatta gatcctccta gtattttata aaataaattg tgttaaatct ttattctgca
     9361 taattggtgc aagtttttca t
//
LOCUS       DASDXX010000106         9347 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.106, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000106 DASDXX010000000
VERSION     DASDXX010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9347
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.106"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            216..905
                     /locus_tag="U0280_001909"
     CDS             216..905
                     /locus_tag="U0280_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HEM2271837.1"
                     /translation="MVEKIERKSLAEQVYDQIKAEITNGTWKIGERIPKEADLMAEFG
                     ISRNTLREAIRALSHIGLLETKQGDGTFVRNNSELNAIMQRRVRESTVQEILEIRHAL
                     DREAVILACDRRTEEDVKTLEKYRHQCQLATEKNDVGAFVKADSALHLTIVKAAHNDL
                     LLDMYVNILEEIQFSITSTTEMSPEANQHNGHAALVKAIEKRNKEQAAHEVTEYITLF
                     KRIDAKNGEKK"
     gene            902..2119
                     /locus_tag="U0280_001910"
     CDS             902..2119
                     /locus_tag="U0280_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEM2271838.1"
                     /translation="MNSDLTNKKILTRSSKVMLVLGIILIAANLRTPITSVGPLLGMI
                     QSDLHLTNTMAGLLTTIPLLAFAGLSPFVSKLSRALGIEVLIFVALLTLVLGSLLRPF
                     GGELNLFAGTFMIGLAIAVGNVILPSLIKKEFPFKLGLMTGVYSISMNLCAAIAAGLT
                     VPIAMNNRFSWHGSMVFWAILGIVALVIWLPQLKYNQRSTEKIATHLVTTSVWKSPLA
                     WKISLFMGSQSAIFYISIAWLPNILADQGLSSTSSGLMLSLMQFAVMPITFIIPIVAG
                     RMKNQQLLVGISILFFLIGIFGIMFASGSVLILSIAIIVYGIGSGMSFSLSMMFFNLR
                     TTSATESADLSGMAQSIGYLFAASGPILFGTLHDALGSWQPTLYVLVGITMLMLYCGL
                     DAGRNKFLFPQKK"
     gene            complement(2318..2545)
                     /locus_tag="U0280_001911"
     CDS             complement(2318..2545)
                     /locus_tag="U0280_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3006 domain-containing protein"
                     /protein_id="HEM2271839.1"
                     /translation="MKKAILDRIEDGKAVFLLEPDQTEWQIDKEKLDSSIKEGDVVTF
                     SETNEIMKHPQETEEMKNRIAEKLERLRGRN"
     gene            complement(2555..3685)
                     /locus_tag="U0280_001912"
     CDS             complement(2555..3685)
                     /locus_tag="U0280_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2271840.1"
                     /translation="MTKKLVICISLIAIFLSGCSFSEPSTSKSNITEKTLNGASFTFF
                     DVGQGDSTLIQAEDGTTILIDTGRQDDDRILTYLKEANIKKIDLLLLTHPHADHIGNA
                     DKVIATYKPKEIWMDGLTFSSSIYEKVIDAALASDAKYKEPRRGEKATFGPFNLEVLS
                     PDKLENDANNDSIAVKITYKDISAIFTGDAEKGREREMVDSGADLEADILDLGHHGSS
                     TSNQPFFLDKVKPQVAVYSAEMANSYGHPHVEVLEWLKERDIKTYGTDVNGTVIIETD
                     GEKIHVQTEKSGTPKAGSSYNKENSTQKTEDATSEELPDSINLNTASSEELQLLPLIG
                     PALAEKIIAERPYQSIDDLKKINGIGDGIVRQIKEQGIAVTK"
     gene            complement(3798..4100)
                     /locus_tag="U0280_001913"
     CDS             complement(3798..4100)
                     /locus_tag="U0280_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesB/YadR/YfhF family protein"
                     /protein_id="HEM2271841.1"
                     /translation="MNIEVTDQANKWFHDEFDVANGNGIRLFAKYGGSNSSLHPGFSI
                     GLTAEKPQEAAVAEKKEDLIFFIEDHDYWYFKDHDWKIDYEPKTEEVLFSFKEKVK"
     gene            complement(4334..4804)
                     /gene="fri"
                     /locus_tag="U0280_001914"
     CDS             complement(4334..4804)
                     /gene="fri"
                     /locus_tag="U0280_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron-binding ferritin Fri"
                     /protein_id="HEM2271842.1"
                     /translation="MKTINSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHE
                     KMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDL
                     VGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE"
     gene            5007..6812
                     /locus_tag="U0280_001915"
     CDS             5007..6812
                     /locus_tag="U0280_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HSP90 family protein"
                     /protein_id="HEM2271843.1"
                     /translation="MENYSHRFQVNLAGMIDILSNHLYDEKDVYIRELLQNATDAIRT
                     RKKIDSTLEGKIHASLTGDNNEKTLIVEDNGIGLTEDEVHAFLATIANSSKGEKNFDG
                     ESSNDFIGRFGIGLLSCFIVSDEIVMISTSKKDGGTTEWRGKADGTYSVRKIETETRE
                     PGTQVYLRLRADLDEHPECEDVEELINTLKKYGSSLESNIIVEINGLEEEINSWTKQF
                     SNKETLSKLSKDQIIQYGEYILGTRFQDYFLIENESGRTFGIAYMIPHAVQMNAIRKN
                     TVFLNNMYVTSEANNILPDWSFFAKCVIWTDELQPVASREAFYKNERLTSVADELGVA
                     LKKGIETLPEEALMKLLATHYLGFKALASEDAPFLKLIYPYLPVRTLNGEEKLGDIIA
                     KNDVIYYTYSVDDFRQIKDIARSSGMTLINGGYSYDSPILAQLSYFVEGTEFVLIEPE
                     EMTNKLRPMTVSEEQAYQPILTEMNSMMAEFDTDVLIKHFEPKDLPTIFIHSTATQEL
                     RELERAVEETNSVFSDILESIQKEQEPAPLAHLYLNLDNELIKRLFTSGKTVKELSVI
                     VNVLYIQALLLGHYPLKRKEMVLMNQNMLRILEML"
     gene            6824..7792
                     /locus_tag="U0280_001916"
     CDS             6824..7792
                     /locus_tag="U0280_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271844.1"
                     /translation="MDYLNDLESVWGMDDTPEKIKVLERIIAGADLYNNIDDGIEARD
                     LLIDTCLTAGFPKKQLQAFSWLIKKWEDKDSDAYIDTEDLFWKYKWISEHVPTFDEVS
                     KAQIDGLLNDMKVKFEQENYSLRPYYKVCTLAAMRMGDVEKAKELFKKWSDTKADFLN
                     DCPACERNDQVHYYCFIKDYETAKKTAKPIIEGKQRCAEVPHLTYGNMALAYLALGDE
                     KMAQECFDKGYPLVEKQISLLPPLGQLLKYLVLTKQTEKAREVIDTNLETVLKAEGGL
                     DRLIFLQAAYPLFDREKEADLVEMTEALTAKFDARNGNSYYQDLLK"
     gene            7888..8634
                     /locus_tag="U0280_001917"
     CDS             7888..8634
                     /locus_tag="U0280_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2271845.1"
                     /translation="MTIWVKNEKNGATEQVIREKEIALGVTLPFEYKQLLSEQNGGLI
                     RKNHFKTTEPTSYGLDFGEIYYLASLDEILTDIPEQKDVDLAGKQVYFHRDESRYIGF
                     SYIDNTSEPSIIYVDFETLQTLIVAETFATFIEELYFSPFPTDFAEHFPIKKLNQILA
                     SSNVQKTKQLLELLEDYPDKKWYLATFLGLLEKQEIPYNLVVYRLFENQLLYFRRKLA
                     PELVEQIFVRLEACDGINKAALAELYKEWK"
     gene            8647..9105
                     /locus_tag="U0280_001918"
     CDS             8647..9105
                     /locus_tag="U0280_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEM2271846.1"
                     /translation="MLKVVFVCLGNICRSPMAEGLFRKEVAEAGLTNEIKIDSAATGT
                     WNLGKPPHRGTQAVLKKHGVDYQEMRARKISDVDFNEADFIIGMDQQNLADLNALNNN
                     PDVIVRSLMSFVPGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK"
     gene            9193..>9347
                     /locus_tag="U0280_001919"
     CDS             9193..>9347
                     /locus_tag="U0280_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HEM2271847.1"
                     /translation="MLGIIWGIIVVLLAVWLLGIIFHIAGGLINILLVIVLILVIWNL
                     IQMARNKR"
BASE COUNT         2875 a         1602 c         1805 g         3065 t
ORIGIN      
        1 tacttctgag taaatataaa acaatgccta gaagaacaaa cactagcacc cgtcttgcag
       61 tgtcgttttc ttttagcttt tctaaccaat tcatattttc accagccctt ttcttccttc
      121 attttatcat agtttaacaa aataaggttt acaaaaaaag aattcttccg taaaatagaa
      181 ccaatcatcc tacctttaga aatggagtga atagtatggt agaaaaaatt gaacgcaaat
      241 cgcttgcaga gcaagtttat gatcaaataa aagcagaaat tactaacggt acttggaaaa
      301 tcggtgaacg cattccgaaa gaagcggatt taatggctga atttggcatt agtcgtaata
      361 cgctacgtga agccattcgt gccctatctc atatcggttt actggaaacc aaacaaggtg
      421 acgggacttt tgttcgtaac aatagtgaac taaatgctat catgcagagg cgtgtccgcg
      481 aatccacggt tcaagaaatc ctggaaattc ggcatgcgct tgacagagaa gcagttattc
      541 tggcctgtga tcgacgcacg gaagaagatg taaaaacact agaaaaatat agacaccaat
      601 gccaactagc gacggaaaaa aatgatgttg gtgcttttgt gaaagctgat tctgcccttc
      661 atttaacaat tgtaaaggca gctcataacg atttgttgtt agatatgtat gtcaatattt
      721 tagaagaaat acagttttcc atcacgagta caaccgaaat gagcccagaa gctaatcagc
      781 ataatgggca cgctgcgctt gtcaaagcga ttgaaaaacg aaataaagaa caagcagctc
      841 atgaagtaac agagtatatt actcttttca aacgaattga tgctaagaat ggagaaaaga
      901 aatgaattca gatttaacca ataaaaaaat ccttacacgc tcgagtaagg taatgcttgt
      961 tttaggaatt attttaattg cggcaaactt acggacacca attacctctg taggtccgtt
     1021 acttggaatg attcaatcag atttacattt aaccaatacg atggctggat tacttacaac
     1081 aattccgcta cttgcatttg caggactatc cccgttcgtt tctaagctaa gtcgagcact
     1141 tggtatagag gtattaattt ttgtagcact attgacactt gtacttggta gcttacttcg
     1201 accttttggg ggcgaactca atttatttgc tggaacgttt atgattggtc ttgctattgc
     1261 tgtcggaaat gtcattttgc caagtttgat aaaaaaagaa tttccattta aattgggtct
     1321 aatgactgga gtttattcca tttcgatgaa tttgtgtgca gcgattgcag ctggcttaac
     1381 ggttccaatt gctatgaaca atcgctttag ctggcatgga agtatggttt tctgggcaat
     1441 tcttggaatc gttgctttag tcatttggct tccacagtta aaatataatc aacgctcgac
     1501 ggaaaaaatt gcaactcact tggttacaac ttcggtttgg aagtctccgc ttgcgtggaa
     1561 aatttcttta tttatgggtt cgcagtcagc aattttttat atttcgattg cctggttacc
     1621 aaatattttg gcggaccaag gattatctag tacttctagt ggcttaatgc tctccttaat
     1681 gcagtttgcg gttatgccga ttacgtttat tattcctatt gttgccggac gaatgaaaaa
     1741 tcagcaatta ctagttggaa tttctatttt attcttttta attgggattt ttggcattat
     1801 gtttgcttct ggtagcgtgc ttattttatc gattgctatc attgtatacg gaattggttc
     1861 ggggatgtca tttagtttgt cgatgatgtt ctttaatttg cgaacaacaa gcgctaccga
     1921 atcagcggat ctctctggaa tggcgcaatc tatcggttac ttgtttgccg cttccggtcc
     1981 gatattattt ggtaccctgc atgatgcgct tggtagctgg caaccaacct tatatgtttt
     2041 agtcggtatt accatgctta tgctatactg cggcctagat gctggacgca ataaatttct
     2101 ctttccacag aaaaagtgat ttttgcgcat aaaaaaacta gtgcggaaaa agggagtaaa
     2161 ccgcactagc taaaagggag tttgggattt tcattctaaa aagggaaaga aatgaaaatg
     2221 ttttgcttgt tgttagctta tacatataat aacttttcaa aaaaagaatg tgctgaaaga
     2281 aagatgataa tttcatgaga gtttaaaaaa gtttttctca gtttctccct cttaatcttt
     2341 ctagcttttc tgcaattcta tttttcattt cttccgtttc ttggggatgt ttcattattt
     2401 cattagtttc tgaaaaagtg acgacatctc cttcttttat ggatgaatcg agcttttctt
     2461 tgtcaatttg ccattctgtt tggtctggtt ctaataaaaa aactgctttg ccatcttcta
     2521 tccgatctaa aattgctttt ttcaccctaa tcacctactt tgttacggca atgccttgtt
     2581 ctttgatttg gcgcacaatg ccatcgccaa tgccgttaat ttttttcaag tcatctatgg
     2641 actgatatgg tcgctcggca atgatttttt ctgcaagcgc tggcccaatt agtggtaata
     2701 attgtaattc ttcactagat gctgtattta aattaatgct gtctggtaat tcttctgatg
     2761 ttgcatcttc tgttttttgc gtgctatttt ctttattata gctgctacct gcttttggtg
     2821 tacctgattt ttcggtttgc acatggattt tttcaccgtc tgtttcaatg attaccgttc
     2881 cattcacatc tgttccatat gtttttatat cacgctcttt taaccactcc agcacttcca
     2941 catgaggatg tccgtaacta ttggccattt cagcagagta aacagccact tggggtttta
     3001 ctttatctag gaaaaatggc tggttggatg tggacgatcc gtggtgccct aaatctaaaa
     3061 tatccgcttc taaatcggca ccgctgtcta ccatttctct ttctcgacct ttttctgcgt
     3121 cacctgtaaa aatagcggaa atatctttat aggtgatttt tacagcgata gaatcattat
     3181 tagcgtcatt ttccaattta tcagggctta aaacctctag attaaatgga ccaaaagtcg
     3241 ctttttcgcc gcgtctcggt tctttgtatt tggcatctga agctaatgct gcgtcaatta
     3301 ctttctcgta aatactacta gaaaaagtta agccatccat ccaaatttct ttcggtttgt
     3361 atgtagcgat tactttatca gcattaccga tatggtctgc gtgcgggtgt gtcagtagca
     3421 gcaaatctat tttctttata ttcgcttctt ttaaataggt taaaatacgg tcatcatctt
     3481 ggcgacctgt atcaatcaaa atagttgtac catcttctgc ttggataagt gtgctatccc
     3541 cttggccaac atcaaaaaat gtaaaacttg caccattcaa tgttttttcg gtaatgttcg
     3601 atttactcgt tgatggttcg gaaaaactac aaccgcttaa aaatatcgcg attaaactta
     3661 tacagattac taatttcttt gtcatctttc tcctcctgct ctcttagtag aatagcaaag
     3721 gaaggcgaaa cagtaaagtt tttaaaacaa aaaccgcctg aaatcaattt gattacacgc
     3781 ggtcatttat gttggattca tttcactttt tctttaaagg aaaaaagtac ttcttccgtt
     3841 tttggttcat agtcaatttt ccagtcgtgg tctttgaaat accaatagtc atggtcttca
     3901 atgaagaaaa ttaagtcttc tttcttctca gcgactgctg cttcttgcgg tttttcggca
     3961 gttaaaccga tagagaaacc aggatgcaag gaactgttag aaccaccgta tttcgcaaaa
     4021 agtcgaattc cattaccatt agctacatca aactcatcat gaaaccattt atttgcttgg
     4081 tccgttacct cgatattcat acttttcact cctcgtttcc aattttttcg taatgattgt
     4141 tattcaagaa tagcagattt cttggtgaat ttcacttttt ctgctttttg ttatgaagat
     4201 aatatacctc tttcaaagaa actttaaacc acattgtgtt aagacaatgt aaaaataagg
     4261 aaattgtact ataacagact ggggcaaaaa aaactgtgtg agacgattaa tcccacacag
     4321 tttttataac tctttattct aatggcgctt ttcctaagaa tgctttgaac atccagatat
     4381 gtttgtcaat gcttgctttg aaagcaatta acatatcgtt tgttacgttg tcgccttctt
     4441 tgtcagtaag ctcaatacct tgttgatatt cgtctctaag taattctaat gttccaacta
     4501 agtcttccat taattgatcc attgtttttg gtttcgtata aggagcttct tcaacgctcg
     4561 cattttctaa aaactctttt aaagtcgaga atggacttcc gccgattgct agtaagcgtt
     4621 ctgctacttc gtccatttgt tcgccgaatt cgctatataa atcatccatt ttttcatgta
     4681 aagtgaagaa gttgtggcct ctcatatacc aatgaatttg atgaattttt actgtgaata
     4741 cgtttaggtt cgctacttgg tgattcaaaa attcctttgt gtctactgag ttgattgttt
     4801 tcataattat cttcctccta ttttataata attatcactt aataataagt ataatctatt
     4861 tccacatcaa tgtccagtgt ggaaaccatc acaaagtatt taccactgat ataaattctt
     4921 aaacatctat tattgttttc tcattattta tctcttcttt tatgatagaa taaaaaggac
     4981 ttttgtacaa ctaggaggac caagctatgg aaaattattc tcaccgcttt caggtgaact
     5041 tggctggtat gattgacatt ctctcaaacc acctttatga cgaaaaagat gtttatattc
     5101 gcgaattact gcaaaatgca accgatgcca ttcgcaccag gaaaaaaatc gattcaactt
     5161 tagaaggtaa aatccatgca tctctaactg gagataataa tgaaaaaaca ttaattgtag
     5221 aagacaacgg aattggttta acggaagatg aggttcacgc ttttctagct actattgcta
     5281 attcatcaaa aggcgaaaaa aactttgatg gagaaagttc caatgacttt attggtcgtt
     5341 ttgggattgg tttactttct tgttttattg ttagtgatga aattgtaatg atttctactt
     5401 ccaaaaaaga tggtggcaca acagaatggc gcggaaaagc ggacggaact tattcggttc
     5461 ggaaaataga aacggaaact cgcgaaccag gtacacaagt gtatttgcgc ttacgagctg
     5521 atttagacga gcaccctgaa tgcgaggacg tagaagaatt aatcaataca ctcaaaaaat
     5581 atggttcctc tttggaaagt aatataatag tagaaattaa tggtttagaa gaagaaatta
     5641 atagttggac caaacagttt tccaataaag aaaccttgtc taaactatca aaagatcaaa
     5701 ttattcagta cggcgaatat atccttggaa cgcgtttcca agattatttc ttaattgaaa
     5761 atgagtcagg aagaacgttt gggattgctt atatgattcc tcatgctgtt caaatgaatg
     5821 ctatccggaa gaacacggta tttttaaata atatgtatgt cacaagtgaa gcaaataata
     5881 ttttgcctga ttggtcgttt tttgctaaat gcgtgatttg gacggatgag cttcaacctg
     5941 ttgcttctcg tgaggcgttt tataaaaatg agcgattaac tagtgttgcc gacgagcttg
     6001 gcgttgcttt gaaaaaagga attgaaactc ttccagaaga agcattgatg aaattattag
     6061 ctacacatta tcttggtttt aaagcacttg cgagtgaaga tgcaccattt ttaaaattaa
     6121 tctatcctta tcttccagtt cggactttga atggcgagga aaaattaggt gatattatcg
     6181 ctaaaaatga tgtcatttat tacacctact cggtcgatga ctttagacaa attaaggata
     6241 ttgctagatc aagcggtatg acgcttatta acggcggcta ttcctatgat tcgccaatct
     6301 tagcgcaatt aagttacttt gttgagggga cagaatttgt tttaatcgaa ccggaagaaa
     6361 tgactaataa attacggcct atgacagtga gcgaagaaca ggcttaccaa cctattttga
     6421 cagaaatgaa tagtatgatg gctgaatttg atacagatgt attaattaaa cattttgaac
     6481 cgaaagattt accgactatt ttcatccact ctacagcaac acaagaatta cgcgaactag
     6541 aacgtgctgt cgaagaaaca aattctgttt ttagtgatat tttagagagc atccaaaaag
     6601 aacaagaacc tgcaccgctt gctcacttgt atttaaattt ggataacgag ctgattaaaa
     6661 gacttttcac ttctggaaaa acagtgaaag aattgtccgt aattgtgaat gtactttata
     6721 tccaagcctt actattaggg cattatccgc ttaaacggaa agaaatggta ttaatgaatc
     6781 aaaatatgtt acgaatctta gagatgctat aggaggaaga aaaatggatt atttgaatga
     6841 tttagaatca gtttggggaa tggatgacac gcctgaaaaa ataaaagtat tagaacgaat
     6901 tattgctggt gcagatttgt ataacaatat agatgatggc attgaagcac gtgatctgtt
     6961 gattgacaca tgcttaacag ctgggtttcc gaaaaagcaa ttacaggctt ttagctggtt
     7021 aatcaaaaaa tgggaagaca aagatagtga tgcttacatt gacacggaag atcttttttg
     7081 gaaatataaa tggattagtg aacatgtccc gacttttgat gaagtatcga aagcgcaaat
     7141 tgacggactt ttgaatgata tgaaggtgaa attcgaacaa gaaaattatt cgctaagacc
     7201 ttattataaa gtgtgcacgc ttgcagccat gcgtatgggc gatgttgaaa aagccaaaga
     7261 gctatttaaa aaatggagtg atacgaaagc agacttttta aatgactgtc ctgcttgcga
     7321 aagaaatgat caagtacatt attattgctt cattaaagac tatgaaacag ctaagaaaac
     7381 agcaaaaccg attattgaag gaaaacaacg ctgtgcggaa gttcctcatt taacgtatgg
     7441 aaatatggcg cttgcatatt tagcgcttgg agatgaaaaa atggcgcaag aatgctttga
     7501 taaaggttat ccccttgtgg agaaacaaat ctccttacta ccaccacttg ggcaattact
     7561 taaatattta gtccttacca agcaaacgga aaaagcgcga gaagtgattg ataccaactt
     7621 agaaactgtt cttaaagctg agggtggttt agaccgactt attttcttac aagcagccta
     7681 ccctcttttc gaccgagaaa aagaagctga tttggtagaa atgacggaag ctttaacggc
     7741 gaagtttgat gcgcggaatg gaaatagtta ttatcaagat cttttgaagt aaaattttgg
     7801 aacatagtta ggaattattt ctagctatgt tcttttgttt gcgctatttt gcttttttta
     7861 ggataataca gggaggagtt gaagaggatg acgatttggg ttaaaaacga aaagaatggc
     7921 gcaactgaac aagtaattcg tgaaaaagaa atagcgttag gcgtcacttt accatttgaa
     7981 tacaaacagc ttttatcaga gcaaaatggt ggattgattc gcaaaaatca ttttaagacg
     8041 acggaaccga cttcttatgg actagatttt ggtgaaatct attatctggc tagtttggat
     8101 gaaattttaa cggatattcc ggaacaaaag gatgttgatc tcgcagggaa gcaagtttat
     8161 ttccaccggg atgaatcgcg ctatattggt ttttcttata tagataatac gtccgaaccc
     8221 agtattattt atgttgattt tgaaacgtta caaacactta ttgttgctga aacgtttgct
     8281 acatttatag aggaattgta ctttagtccc tttcctaccg atttcgcgga acattttccc
     8341 ataaaaaaat taaatcaaat tctcgcttcc agcaatgtgc aaaaaacaaa acaattactg
     8401 gaactattag aagattatcc agataaaaag tggtatttag cgacattttt aggattactt
     8461 gaaaaacaag aaatcccgta taatttagtt gtctatcgtt tgtttgaaaa tcaattgctt
     8521 tatttccgga gaaaactcgc gcctgaactt gtggagcaaa ttttcgtccg actggaagca
     8581 tgtgatggga taaataaagc ggctctggcc gaattatata aggaatggaa ataaggagga
     8641 attcaattgt taaaagtagt ttttgtctgt ttagggaata tttgtcgttc accaatggct
     8701 gaggggttat ttcggaaaga agttgcagaa gctgggttaa cgaatgaaat aaaaattgat
     8761 tctgctgcaa ctggtacttg gaatttaggg aaaccgccac accgcgggac gcaagcagtg
     8821 ttgaaaaagc atggtgttga ttatcaagag atgcgagctc gaaaaatttc tgatgttgat
     8881 tttaacgaag ctgattttat tatcgggatg gatcagcaaa atttagcaga tttaaatgca
     8941 cttaataata atccagatgt catcgttcgc tcgcttatgt cctttgtgcc tggtcaagag
     9001 gataaagata ttccagaccc atattataca ggggattttg atgaaaccga acgcatggta
     9061 actgagggag taaaggccct tttagcttat atcacaaaaa aatagtctgt ttttagccct
     9121 aatatgttta aagactgacc tcacgggaat atataagagt acaatcaaaa gtgcagaaag
     9181 aggtttttat acatgttagg aattatttgg ggaatcatcg tagttttatt agcagtgtgg
     9241 ttacttggaa ttattttcca tattgcgggt ggattaatta atatcttgtt agtaatcgtt
     9301 ttaatactcg ttatttggaa cttaattcaa atggctagaa ataaacg
//
LOCUS       DASDXX010000107         9215 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.107, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000107 DASDXX010000000
VERSION     DASDXX010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9215
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.107"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..144)
                     /locus_tag="U0280_001920"
     CDS             complement(<1..144)
                     /locus_tag="U0280_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2271848.1"
                     /translation="MKKRWLVFAIICLIITGFLSPKAEAATDYGSSFFTNVSLQNQNG
                     EQTT"
     gene            complement(262..1029)
                     /locus_tag="U0280_001921"
     CDS             complement(262..1029)
                     /locus_tag="U0280_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2271849.1"
                     /translation="MNIKEKIAVQLYSVRKEMERDLEGTLRKMHEIGFRYVQLDGMRG
                     NDPSEVRRLLQKYELKVIGMHIKHDRFMNDLDGIIEEAYFFDCKTVFDKYIEEEDQTT
                     AGYTATKAALINAAEKLHPLGFRIGLHNPEYDFNECIHGRRVMDYITDPVDGICIYAE
                     PDTYWIRAAGHDETEFIKRYSGRAPIVHMKDFVSGFELEDMDNNLVEIGQGEVDFRAI
                     IEWGEANGVEYYCIEQDRSKRAMFETLEASYQYLLQL"
     gene            complement(1047..2000)
                     /locus_tag="U0280_001922"
     CDS             complement(1047..2000)
                     /locus_tag="U0280_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2271850.1"
                     /translation="MEKIIVNGRKNGQKIEIACSNLVMGAGDFLRADNMDFAGPVLDQ
                     YFEMGGNIFDTARHYRHSEKAIGAWMNMRGNRDSVIIQTKGGHPVREASDVPRVTPEA
                     IHEDISVSLDTLQTDHVELFALHRDNPDVEVGPIMEAMHKEVEDGRVYAIGLSNWELP
                     RIIEANEYAVSHGLTPLSFNSPNFSLAKVNRPRWENCVSASEEMIRWHEATNLPLFSW
                     SSQAGGFFSGRFSEEDTRDTEMVEVYYSEANWERYSRAKQLANQKGCTPIQISLAYVL
                     TQSFPTAAVIGPENATELQSSVAAAGIKLTASEVDWLDLKA"
     gene            complement(2000..2728)
                     /locus_tag="U0280_001923"
     CDS             complement(2000..2728)
                     /locus_tag="U0280_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2271851.1"
                     /translation="MKLIINESEQLVAQTVSQRIIELVKEKPASLICIAGGDTPLLTI
                     EALIKANQTGEVDFSETQFVGLDEWVGLGRETKGSCIQTLYDAFFDRLKNVSSEQICF
                     FDGKATSLTDECARVDKFIDDRGGMDFILLGIGLNGHIGFNEPFVPVDVNCHVVELDD
                     VTKRVMSKYFDTDLPLTHGISLGMQQILAAKEIYLVATGEKKIDIVKQVVEKEPTVAI
                     PATLVKDSNTTLVVDKIAASGVEA"
     gene            complement(2749..4074)
                     /locus_tag="U0280_001924"
     CDS             complement(2749..4074)
                     /locus_tag="U0280_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2271852.1"
                     /translation="MSSKNKQSFMNRFIAFMEKYFEPVAARIEKQRHISSIKNGMIAL
                     ISVLIIGSFSLIISAIGNMFPAGSVVKEFFVQNAAALNLPFQFTFGLLSIYAAITISY
                     SHAKQMKVPVLHSVMAAVMVTLILNTKMVDGVLNTEFLDSRGLFIAIFAALISVELIG
                     LFIRKNITIRIKGLPAGIATTFEAIIPLVVLLFSAVGLSILMQSVTSGQIIPEAFTTM
                     LAPAINSIDTPYAVFLICFLEMLFWFIGLNGYAILIGFVLPFMTQYLGANAAAYAAGE
                     PIPHVFAPNFWDYFMGFSGSGITGALVILALFSKSRELKAVGKVLVVPAIFTISEPVV
                     FGLPICFNPYLFIPFVLGTPILAVGQWFVFHFGWVRPPIANVGGTPIPLAQYLATMDW
                     RAIILIIFVLAAAVCMYYPFFKMYEKSLIKEEEVVSERQAAHDALDLDF"
     gene            complement(4094..4429)
                     /locus_tag="U0280_001925"
     CDS             complement(4094..4429)
                     /locus_tag="U0280_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2271853.1"
                     /translation="MEINQLHVLLVCNLGASTGVMVTKMKEIAQNSEKLTNTDVKIEA
                     HPAGELREHIEDFDVILVGPQIKHQLKHLSEIAAEYNKPIQVIDTKDYGTVNGANILK
                     DAIILKLNK"
     gene            complement(4430..4759)
                     /locus_tag="U0280_001926"
     CDS             complement(4430..4759)
                     /locus_tag="U0280_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2271854.1"
                     /translation="MDIEKISFSLISLAGDSFSKLIEALQAAKESDSELVEQLLKEAD
                     DLMIEAHKVQTEMLIQETRGEQANFSVLLVHAQDTLMNTILASTLIREMIEMHQEIKT
                     LRKEEEK"
     gene            complement(4774..6792)
                     /locus_tag="U0280_001927"
     CDS             complement(4774..6792)
                     /locus_tag="U0280_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2271855.1"
                     /translation="MKLNQQCIQILDFLMEQEDFKNIGYISNALGCSERSVRYSLEKI
                     DIFLHEQTLPALIRHTRKGVLLPEKNIVNPVVRKFKQQITPKKYRYSQEEVQQFLLLK
                     LLLSEEVLPVTYFEEVLFISRSSVLNHLRAIEGELFLNNLDLSHQPRHGFLVTGNLIT
                     KTSLFARSFLRFINIREFYQFLDSENSLSKKGELFFYNLFELEILQEVNREAHSVEEN
                     MTRAMDEQLYLTLIAILLKQHEAKPDFQFTADFMIKDELDQALATIIGSLKQYQYGRE
                     DEAVIEAFVTGICEKMGEIYQVDFVHGDTDFFTQIKAHIKLMIRRVRAGVTIENPIFN
                     EFMRDNREIFMRVKESLDALKPLLPISVSSQEISFLAIYFASEVQRNKQTVEMKPNLL
                     IICPEGVAVSKMIAIQLKRMFEFESIQTIGLRKFKRAMMADFDFVISTVDLPDMQDAK
                     VLRIHSYLQKEDMELLQKHLRMKLIKSDKQIINKFSKILAIIGENTQITNLSKLEFDL
                     LEALISDEGETPKRLIPPFQFTEEAIVMEETCPTWRQAIKLGTKCLEHLEVIEPSYHE
                     KIIHNLKAYGPYMVVAPGVVIAHAGASDGVLMDGIGVTIIEDGIMFFDRYEEPVHVIF
                     TLALKTKEAHLIVEQLMKLALDEEKMQKIKMASSKRDIYHYVKSAIFE"
     gene            complement(7000..8166)
                     /locus_tag="U0280_001928"
     CDS             complement(7000..8166)
                     /locus_tag="U0280_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2271856.1"
                     /translation="MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSI
                     STAGLTVSIYALGVMVGAPVLTTMTAKMNRKNLLLLVMLVFLIGNLVSAFAVSFGMLL
                     TGRVVAAFAHGVFMSIASVIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQL
                     FGWRMSFLFIVAIGVIAIIANFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAF
                     GYGGTFVVYTYLSPMFSGMGYSTSMIVILLIVYGVMVAIGNTIGGHFANERPAKALFV
                     MFSLQGITLLLLQFTSTNAIFGLMTIMLMGFFAFMNVSGLQLYVVQLAERYLPETVSM
                     ASALNISAFNVGIAVGAFIGGLVTEYIGLGYTPIVGFLMVFIAIILTFYMKKDK"
     gene            8294..8647
                     /locus_tag="U0280_001929"
     CDS             8294..8647
                     /locus_tag="U0280_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2271857.1"
                     /translation="MTKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPN
                     ITQKMLTQQLRELEKSGVIVRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVD
                     LLLTKNEDIILLKRD"
     gene            complement(8680..8991)
                     /locus_tag="U0280_001930"
     CDS             complement(8680..8991)
                     /locus_tag="U0280_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2316 family protein"
                     /protein_id="HEM2271858.1"
                     /translation="MTLSKEQIKATKSEFAENLALANLTIAEVAKELNTSEVKIERIL
                     NLKQRSLNDGWILRNYLLRKVAEVGKTPVPFTALSGDYHGYWFLDGEEIDSGILSIGN
                     H"
     gene            complement(9008..>9215)
                     /locus_tag="U0280_001931"
     CDS             complement(9008..>9215)
                     /locus_tag="U0280_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEM2271859.1"
                     /translation="VYVTPSGLLYQNEWKFLLNELDENHLIYALDYPFVKPENARTFL
                     DTLDLTDEVKAKIAHENAEKLLHL"
BASE COUNT         2825 a         2108 c         1472 g         2810 t
ORIGIN      
        1 cgttgtttgc tccccgtttt gattttgtaa tgatacatta gtaaaaaaac tgctgccgta
       61 atctgttgca gcttctgctt ttgggcttaa aaatccagtg ataattaaac atataattgc
      121 aaatactaac catctttttt tcattttgtt tcattccccc ttaaaacatc tatctttata
      181 gttcccacaa cttgcttgtt aaaaaccgta caatgatttt gcgcacaaaa aaacgccaga
      241 acaagtctga cgtttttctt tttatagctg caataaatat tggtaactgg cttctagtgt
      301 ttcgaacata gctcgtttgg atctatcttg ctcaatgcaa tagtactcga ctccgtttgc
      361 ttcgccccat tcaataatag cgcgaaaatc cacttcacct tgccctattt cgactaaatt
      421 attatccata tcttctagtt caaaaccgct cacaaaatct ttcatatgca caatcggcgc
      481 gcggccgctg tagcgtttaa taaattctgt ttcatcatgt ccagctgcgc gaatccagta
      541 agtatcaggt tcagcataaa tacaaatacc gtcaactggg tcggtaatat aatccatcac
      601 tctgcgacca tgaatgcatt cattgaaatc gtattccgga ttatgaagac caatgcgaaa
      661 acctagtgga tgtagttttt ccgccgcatt aattaacgcc gcttttgttg ccgtgtagcc
      721 cgctgtcgtt tggtcctctt cttcaatata tttgtcaaaa acagttttac aatcaaagaa
      781 ataagcttct tcaatgatgc catccaaatc attcataaaa cgatcatgct tgatgtgcat
      841 gccgatcact tttaactcat atttttgcag taaacgacgt acctcgcttg gatcattgcc
      901 acgcatacca tcaagttgca catatcgaaa gccgatttca tgcattttcc ggagcgtacc
      961 ttctaaatcg cgctccattt cttttcgtac agaataaagt tggactgcta ttttttcttt
     1021 tatattcatt gtttctccgc ctttccttat gcctttaaat ccagccaatc aacctcagac
     1081 gctgttaatt taatcccggc cgctgcaacg gaagattgaa gttccgtagc attttccgga
     1141 ccgatgacag cggctgtcgg gaatgattgc gttaatacat aagcaagcga aatttggatt
     1201 ggagtgcaac ctttttggtt agctagttgc ttggcacgac tgtatctttc ccagtttgcc
     1261 tcactataat aaacttcgac catttccgta tcgcgcgtgt cttcctcaga aaatctacca
     1321 gagaaaaatc cgcctgcttg tgatgaccaa gaaaatagtg gcaaattcgt cgcctcatgc
     1381 cagcgaatca tctcttcact cgccgaaaca caattttccc agcgtggtcg attcactttt
     1441 gccaaactaa aattagggct gttaaagctt agtggcgtca atccatggct cactgcatat
     1501 tcattcgctt cgataatacg cgggagctcc cagtttgaaa gtccgatagc ataaacgcgg
     1561 ccatcttcca cttctttatg catcgcctcc ataataggac ccacttctac atctggattg
     1621 tcgcgatgaa gtgcgaataa ttcaacatga tctgtttgta gcgtatctaa actaaccgaa
     1681 atatcttcgt gaattgcttc cggagtaacc cgcggcacgt cgcttgcttc ccgaactgga
     1741 tgcccgcctt tcgtttggat aatgacacta tcacgatttc ctctcatatt catccacgcg
     1801 ccaatcgctt tttcactatg gcgataatgg cgcgccgtat caaaaatatt tccacccatt
     1861 tcaaaatatt gatctagtac tggacccgca aaatccatat tatctgcacg taagaaatct
     1921 cctgcaccca tcactaaatt agagcaagct atctcgattt tttgtccatt ttttctgccg
     1981 ttaacgataa ttttttccat tatgcttcca ccccactcgc ggcaatttta tcgactacaa
     2041 gtgttgtatt cgaatctttt acgagtgttg caggaatcgc tactgtcggt tctttttcca
     2101 ctacttgttt cacgatatca atttttttct cgccagttgc tactaaatat atttctttcg
     2161 ccgctaaaat ttgttgcata ccaagagaaa ttccgtgtgt taatggcaaa tctgtatcaa
     2221 aatatttgct catgacgcgt ttcgttacat catcaagttc cacgacatga cagttcacat
     2281 ctactggcac aaatggctcg ttgaagccaa tatgcccatt aagtccaatc cccagcaaaa
     2341 taaaatccat tccgccacgg tcgtcgataa acttgtctac acgagcgcat tcatccgtta
     2401 agctcgttgc tttcccatcg aaaaagcaaa tttgttcact agaaacattt ttcaaacggt
     2461 cgaaaaatgc atcatagagt gtttggatac agctaccttt tgtttcgcgt ccaaggccaa
     2521 cccattcatc caaaccaaca aattgcgtct cactaaaatc tacttcgccc gtttgattcg
     2581 ctttaataag cgcttctatt gttagtaaag gcgtgtcccc accagcgata caaattaaac
     2641 ttgcaggttt ttcttttacc aattcaatga ttctttggct cactgtttgc gccacgagtt
     2701 gttcactttc attaataatt aatttcattt taaaatcaac ctttcttatt agaaatccaa
     2761 gtctagtgca tcgtgcgcag cttggcgttc tgatacaact tcttcttctt taatcaagct
     2821 cttctcatac attttgaaga acggatagta catacaaacg gctgctgcga gaacgaagat
     2881 gattaaaata atcgcgcgcc aatccatcgt cgccaaatac tgcgcgagtg gaatcggtgt
     2941 cccgccaaca ttcgcaatcg gcggacgaac ccaaccaaag tggaacacaa accattgccc
     3001 tactgctaaa attggcgttc caagtacgaa tggaataaac aaatacggat taaaacagat
     3061 tggcaaaccg aatacaactg gttcagaaat tgtgaaaatc gctggaacaa ccaacacttt
     3121 tccgaccgct tttaattctc ttgatttact aaatagcgca aggataacta atgcacctgt
     3181 aataccagaa ccagagaagc ccatgaagta atcccagaag tttggcgcaa atacgtgcgg
     3241 aattggttct cctgccgcat atgcagccgc gttcgctcct aaatattgtg tcataaatgg
     3301 aagcacaaaa ccaatcaaaa tcgcataacc atttagaccg ataaaccaga atagcatttc
     3361 aaggaaacaa ataaggaaaa ccgcataagg cgtatcaata ctattaatcg ccggagctag
     3421 catcgtcgta aaggcttccg gaatgatttg accgctagtg acactttgca ttaaaatact
     3481 tagtccaaca gcactgaata gcagtacaac tagtggaata attgcttcaa aagtagtcgc
     3541 aatccccgcc ggtaaccctt taattcgaat cgtaatattt tttctaataa ataaaccgat
     3601 aagttctaca gaaatcagcg ctgcaaaaat ggcgataaat agccctcttg aatccagaaa
     3661 ttctgtatta agcaccccgt caaccatttt cgtattgagg atgagcgtca ccataacagc
     3721 tgccatcaca ctatgtaaca caggtacttt catttgtttt gcgtggctat aggaaattgt
     3781 tatagccgca taaatcgata gtaatccaaa cgtaaattga aacggtaagt taagcgctgc
     3841 tgcattttga acaaagaatt ctttcacaac agaacctgct ggaaacatat ttccgattgc
     3901 tgaaataatc agcgaaaatg atccaataat taaaaccgag atcaaagcaa tcatcccatt
     3961 ttttattgag gaaatatgac gttgtttttc aattctagct gcgacaggtt caaaatattt
     4021 ctccataaaa gcaataaaac ggttcataaa agattgtttg tttttactcg acatgttgtt
     4081 tccctccact tttttatttg ttcagtttaa gaataattgc gtcttttaaa atgtttgcgc
     4141 cattaacagt gccgtaatct ttcgtatcga tgacttgaat tggtttatta tattccgccg
     4201 caatttcact taaatgttta agttgatgtt tgatttgagg accgactaaa ataacgtcaa
     4261 agtcttcaat atgctcgcgt aattctcctg ctggatgcgc ctcaattttc acatctgtat
     4321 tcgtgagctt ttcactgttt tgggcgattt ccttcatttt tgtaaccatt acccctgtag
     4381 atgcgcctaa gttacacact aaaagtacat gtaattgatt gatttccatt tacttttcct
     4441 cctcttttct taatgtttta atctcttgat gcatttcaat catttctcga attaaagtcg
     4501 atgctaagat ggtattcatt aaagtatctt gcgcatgtac gagtaaaacg gaaaaatttg
     4561 cttgttcccc tcttgtttct tgaatcagca tttccgtttg tactttgtgc gcttcaatca
     4621 ttaggtcatc tgcttctttt aaaagttgtt ctactaattc tgaatctgat tcttttgcgg
     4681 cctgtaatgc ttcaattaat ttagaaaacg aatcccccgc cagtgaaatt aatgaaaacg
     4741 atattttttc tatgtccatt atgaaaccct ctctcattca aagatagccg acttaacgta
     4801 atgataaata tcacgttttg agctagccat tttaattttt tgcatttttt cctcgtccag
     4861 cgctaacttc attaattgtt ccacgatcaa gtgtgcctct tttgttttta aagctaaggt
     4921 gaaaatgaca tgaaccggct cctcgtatct atcgaaaaac atgatgccat cctcaataat
     4981 cgtcactcca atgccatcca tcaaaacacc gtcacttgcc cccgcatgtg caatgacaac
     5041 acctggcgca acgaccatat acggcccgta tgcttttaag ttatgaatga ttttttcatg
     5101 ataactcggc tcaatgactt ctaaatgctc caaacatttt gttccaagct taattgcctg
     5161 cctccatgtt gggcatgttt cttccataac aatcgcttct tctgtaaatt gaaacggtgg
     5221 tataagcctt tttggtgttt caccttcatc cgatataagc gcttccaata aatcgaattc
     5281 taatttactt aaattagtaa tttgcgtgtt ttcgccaata atcgctaaaa tcttactgaa
     5341 cttattaata atctgtttat cacttttgat gagtttcatc cgtaaatgct tttgcagtaa
     5401 ttccatatcc tctttttgca aatagctatg aatccggagt acttttgcgt cttgcatatc
     5461 tggtaaatcc actgtgctaa tcacaaaatc aaaatcagcc atcatcgcgc gtttgaactt
     5521 tctgaggcca attgtttgaa tcgattcaaa ctcaaacata cgctttaact gaatcgcaat
     5581 catttttgaa acagcgacac cttccgggca aataatcagc aaattcggct tcatttcaac
     5641 tgtttgttta ttgcgttgta cctcagatgc aaaataaata gctaaaaatg aaatttcttg
     5701 agagctgaca gaaatcggca ataacggctt gagtgcatcc aaactctcct tcacacgcat
     5761 aaaaatttct cgattatcgc gcataaattc attaaaaatc ggattctcga tagtaactcc
     5821 ggcgcgaaca cgcctaatca ttaatttaat gtgtgctttg atttgcgtga aaaaatccgt
     5881 atcgccatgc acaaaatcca cttgataaat ttcacccatt ttttcgcaaa tacctgttac
     5941 aaatgcttca attaccgcct catcttcacg cccatattga tactgcttca aagacccaat
     6001 aattgttgct aacgcctgat caagctcatc tttaatcata aaatctgctg taaactgaaa
     6061 atccggtttg gcttcatgct gcttcagtaa aatcgcaatt agcgttaagt aaagctgctc
     6121 atccatcgca cgtgtcatat tctcctccac cgaatgcgcc tcacgattca cctcctgcaa
     6181 aatctccagt tcaaaaagat tataaaaaaa taactcgcct tttttagata agctattttc
     6241 cgaatctaaa aactgataaa attcgcggat attaataaaa cgcaagaaac ttctagcaaa
     6301 aagcgatgtt ttcgtaatta aatttccagt cactagaaag ccatgcctag gctgatgcga
     6361 taaatctaaa ttatttaaaa aaagttctcc ttcaatagca cgtagatgat ttagcacaga
     6421 ggatctggaa ataaacagga cttcttcaaa ataagtaacc gggagcactt cttcacttaa
     6481 aagcagtttt agcagtaaaa attgctgcac ttcttcttgg ctgtaacgat attttttcgg
     6541 cgtaatttgt tgcttaaatt tacgcacaac cggatttacg atattctttt ccggaagtag
     6601 cacccctttc cttgtatgtc tgataagagc tggtaatgtt tgctcatgga gaaaaatatc
     6661 gattttttcc aaactataac gaacacttcg ctccgaacaa ccaagcgcgt tagaaatata
     6721 accaatattt ttaaaatctt cctgctccat aagaaaatct aaaatttgaa tacactgctg
     6781 atttagtttc atcaggtatc actcctcttt ctaaattcaa tttatcattt tcatgatagg
     6841 gcttacaata agctatatag ctatttttgt cagatacgta gggacaaaaa aactatccat
     6901 tttactataa ctggaaaaaa accttgccgg aataggtcgg agctactgaa agcacaaaaa
     6961 aagccttcta cattcactgt aaaaggccta ttatttgaac tatttatctt ttttcatata
     7021 gaaagttaaa ataattgcga tgaaaaccat taaaaatcca acaatcgggg tataacccaa
     7081 accaatatat tccgtaacta atccgccaat aaatgcacct actgctatcc caacattaaa
     7141 agctgaaata ttaagtgccg aagccatgct caccgtttct ggcaaatacc gctctgccaa
     7201 ttgcacgaca tacaactgca aaccagacac attcataaag gcaaaaaatc ccatcaacat
     7261 aatagtcatt aatccaaaaa tcgcgttggt cgatgtaaat tgaagtaata ataacgtaat
     7321 cccttgcaaa ctaaacatca cgaacagtgc cttagccggg cgctcattcg caaaatgccc
     7381 accaatcgta ttcccaatcg caaccatcac accatacaca ataagtaaaa taacaatcat
     7441 gcttgtagaa tagcccattc cgctaaacat cggcgacaaa tacgtataaa ccacaaaagt
     7501 accaccatag ccaaacgctg tcatgagtaa caccatcacg atttttttat taactaataa
     7561 ttgtccaatc gctttaaatg aaatactttt tccattggat aagtttttcg gaacgaggaa
     7621 aaaattagca ataatcgcaa tcacgccaat cgcaacaata aacaggaatg acatccgcca
     7681 accaaatagt tgcccgataa acgtcccaag cggcacccct gtcacagtcg ccaccgtcaa
     7741 ccctgtaaac atcaccgcaa tcgcactagc tcgtttgctc ggatgaacca catcggcagc
     7801 gataacagaa gcaatcgaca taaacacccc atgcgcaaac gccgcaacaa cacgcccagt
     7861 aaggagcatt ccaaaactca cagcaaatgc cgagacaaga ttccctatca gaaacacgag
     7921 catgactaat aataacaaat ttttacgatt catcttcgcc gtcatagttg ttaaaaccgg
     7981 cgctccaacc atcacaccaa gcgcatatat cgatacagtt aaaccagccg tactaatcga
     8041 cacacccata ctagaagaaa tcagcggaag cagtcccaca ctaataaatt ctgttgaacc
     8101 aatcccaaac gcactaatcg ctagcgccaa aagtgtcaaa ttaggattta cttttttcat
     8161 atccacatcg ttccccccta aaaaattgca aattgtttcg ttctgttata cagtatctta
     8221 tataccgtac agaataacaa gaaggtactt aaaagtcata tagatactaa aaagtgccta
     8281 taggaggatt acgatgacta aagtatataa tatcggcgtc gaagctacac tagaagttat
     8341 aggcggaaaa tggaaaccag tcatcctttg ccatttacgc gaaggcaaaa aacgaactgg
     8401 cgaattaaaa cgactcatcc ccaacatcac acaaaaaatg ctcacacaac aattgcgcga
     8461 gctggaaaaa tccggggtta ttgtccgcaa agtatatgaa caaatcccac caaaagtcga
     8521 gtattcattg agtgaatacg gcgaatcgtt gtcggagatt ttgaacaaac tttgcttatg
     8581 gggcgagaat catgtggatc ttttgctcac taagaatgaa gatattattt tgttgaaacg
     8641 agattaatag aaaaatagcc acctctcggg tggctatttt taatgattcc ctatacttaa
     8701 tatccctgaa tcaatttctt ctccatctaa aaaccaatac ccatgataat ccccactgag
     8761 cgctgtaaac ggaactggtg tcttccctac ttccgctacc tttctaagta agtaattccg
     8821 caaaatccaa ccatcattta aagaacgttg ctttaaattc aaaatccgtt ctatttttac
     8881 ttcacttgta tttagttctt tcgctacttc ggcaattgtt aaattcgcaa gcgccaaatt
     8941 ctccgcaaac tcacttttcg ttgctttgat ttgttctttt gataaagtca tttttcagtt
     9001 ccacctttta taaatgtaat aatttttcag cattttcgtg agcgattttt gcttttactt
     9061 catccgttaa atcaagcgta tctaggaaag tcctagcatt ttctggtttt acaaaaggat
     9121 aatctagcgc ataaataaga tgattttcat ctaattcatt taataaaaac ttccattcat
     9181 tttggtataa taagccgctt ggtgtcacat acaca
//
LOCUS       DASDXX010000108         9112 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.108, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000108 DASDXX010000000
VERSION     DASDXX010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9112
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.108"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..2411)
                     /locus_tag="U0280_001932"
     CDS             complement(<1..2411)
                     /locus_tag="U0280_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2271860.1"
                     /translation="MKYMVKWRGFFIVAIIGLLVFQNVSPVLATIVDEKTTMITLKII
                     KEDKDTKEKINGSSFEIKNKKTGETKEVSITEHGTIIENSLSEGEYIVKEKKAAPGYT
                     LDEQTYNVTLAVKEEAITSSSTKKEAEKTPSVTEQPSKKGNLKAVITDNIFTAVKVEN
                     GTGNELGATNRIKNGGAVVLKMNFTFSGKNYKAGDTFKTVLPDSFNFGTTNLTGDFLP
                     STEAKWDLNASTRELTITFFKDGVQEGNYDIELSTALKSFSETEKTSQVAVFNTAGGN
                     TVYQLEIIPEVDKATQVMLEAMPSKVNPDKATVDARFNLTKETSELGELRLSDTAYGG
                     STIINRNSIKVYSTDISAKGTFIGSKQLLTENTDYELIYVPSGLTIKLKEGLKAKGYQ
                     VTYERSIDKTNSSLSTIGTSATTVGSSGMLSNGSMTISVTIKAYDHLIKKAVYNPVTQ
                     CIDWTINVNYDLANLTPGTVLTDVLTDDNVSYVADSLKIKRVTFNEESGEAVIGDDAS
                     NDWTVSTISDNGSFNMNYKKTDEKAYQVTYSTKLTDFSPRKIKNEVTDEKGVKATENF
                     DFKPDLLNKEAGEIDYYNNTMDWTITVNSEGINMQNINIVDEFSTGVKSLVSYNVYAY
                     PSDSGYKLLTEGRDFTIQKDVSPAGFKIKLIGNYATTDNKIVVKMKTKIDLTDGAKTL
                     DNKASFSYFDGSLTQYSETIKAEATPETSILANGGKVGKWNPATGEINWIVSVNAMGK
                     KYDKLVLDDEFLDGTTFVEGSLQYRNVVNSSELTDLSIPLEIKGTLAQVGDANYPTKI
                     DTSAN"
     gene            complement(2680..7812)
                     /locus_tag="U0280_001933"
     CDS             complement(2680..7812)
                     /locus_tag="U0280_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271861.1"
                     /translation="MKNIRHWKKLVIAMVIGLLVFQNVSPVLATMTDDETAKTTLKIT
                     KEDKDTKEKINGSTFEIKNKETGETNDLTISANGEATMDSLSPGDYLVKEKVAPKGYT
                     LDEKEYSVTLAEKEEVITSVSAKVQEETTKEATTPTPVKKATQNANLKAAITDNIFNK
                     VTLKDGNGDEINTSDRIQNGSGVVLNMNFAFSGKNYKAGDTFTTVLPDAFNFGNKNLS
                     GNFLPSTEAEWTLDVTTRELTITFLKDGIQEGDYDVNISTAFKVFTSTEETIQEVVFK
                     TAGKDTVYQIEVVPVVNYPTTVGITANPGVVNPTKGQVDAKFNLTKEKDAKGELKLND
                     YASGGTTTIDKDTIKVYSSDVSAGGTFIGTKKLLVEGTDYTLTYSATSLTVTLNGGLA
                     GKGYQVTYDRTINKPSDSLSYMSTQAYTVGDSGTLSSNSAYVYLTMTNYKHIEKKATY
                     NGSTQSIDWKINFNFDQDEISPSTVLTDVLADNDVEYVADSLKIKRVTFNATNGSPIV
                     GGDASSDWTTSAISANGNFNLTYKNTNTNAYEITYSTKITDFSDRKIKNEITDENGVS
                     ADATIAIQPDLLKKEAGTIDYFNNTMTWKITANSDRIKMGNLNITDEFSTGVKALKSY
                     TVRAYTDNINSVLLTEGKDYTIDKDVTPAGFYIQLIGDYATTDKKIVVDFVTEIDLSD
                     VTKTIDNKASISYYDGGIIKYVDDVKASMTPDPAMMTNGGKYGSYNSTTGNIDWIVSV
                     NAMAKNYDNLIFDDAIPTGLTYVEGSLQYRNVASTSEMMNLYIPLNSVGTVAKTGDKN
                     YPTKVDTTGNKLHLEFANLENSRVFIKYSTKPNENWYFYSYVQNTAKVSDNGVGEKSY
                     SYQAYASKLYNAMTKTATIDPSFDNKVNWVVTLNNISADRPINNPTITDTMKTGTTGA
                     QVVKSSFKVINETTGEDIDSKYYDITYTDNNFTIQFKDYKATAPIKVTYSTISLMSGL
                     VSNTATTASPDYGSLPMTYKSRTTSISPAFTIGSGSGTATIGSLEITKVDKKDNTKKL
                     AGAKFQLYTLEGDKAGQEATTDTDGKIVMDGLQSGKYKLVETEAPTGYTISDEYKDGK
                     EITVTADAVTNVTIENTEQTGSAVLLKEDSVTKDAIAGAEFELQNADGTKVAENLVSN
                     ADGKIEVTDLAPGDYQFVETKAPTGYVLDATPSKFTIEFNQEAAVIVTKENTAKTGSV
                     VLTKEDSVTKATIAGAEFDLQKADGTKVSENLVTDADGKIEANDLAPGDYQFVETKAA
                     AGYVLDATPSEFTIEFNQDKAAVVTKENTAKSGSVVLTKQDSATKAALSDAEFELQTA
                     TGTKVKDNLTTNASGEIEVADLAPGDYKFIETKAPTGYELDATPVTFTIEFNQSTAVK
                     VTKENVAKTGSVVLTKLDSKSRSNLAGAEFELQTKLGVSLKDKVVTEANGQLQIDNLA
                     PGDYQLVETKAPTGYELDATPVEFTIEFNQKDAVQVTKTNKMSTGSVVLTKTDGQTKA
                     PLADATFKLVDADNNVTENLTTDASGKLEITNLAPGDYQLIETKAPKGYELDTVPVDV
                     KISFNQNQVLQVTKTNIKTVVSGKVIAEFVDTKGNVLAEQEIHAGLVGEKYVTKAKSI
                     AGYKLTKDPTNKVGIYKEADQKVTFVYEKNKSPLVVDPTKPIKPSKPTKPSANPSKQA
                     TVKKAQSLPSTGDNSLANLIITGLFASTLGLFLLRKSKKVND"
     gene            complement(7993..>9112)
                     /locus_tag="U0280_001934"
     CDS             complement(7993..>9112)
                     /locus_tag="U0280_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271862.1"
                     /translation="VSYQLSLENDSDEKIANMVLMDVLPSENDLGITDNSERGSKFNL
                     ELTKAVAIPNEWKDKVDVKYSTAKNPKRAGVLDKHTIYPTGSEPLVDNAEATEADWLT
                     ASEVQDWSKIYSFKMELKEGIEWIPGKSMKIQFDLKTPKKNQIDKGFLNQQTKKEDRA
                     AWNSFAVAVNNSQVIEPAQVGVALDDSVAPVTVQYVDQNHKQIASPETLTGAYGEKFT
                     AKQKKITNYTLVKTPANVSGTFNEKAQTVTFVYQKVTAGNIIVDYVDKNGEKLADSIV
                     LTGKLNSSYRTSAKKISGYKLYQTPKNASGKFLNSSQKVTYVYEKTSALSVSSNERAG
                     NVKKSEKLPQTGDSKKTNLWFILGMLLLSSAFVLAKKR"
BASE COUNT         2383 a         1731 c         1508 g         3490 t
ORIGIN      
        1 ttattggctg atgtgtctat tttggttgga taattagcat ccccaacttg tgctaaagtc
       61 ccttttatct ctagaggaat actcaagtcg gtcagctcgg atgaattaac tacattacga
      121 tactgtaaag atccttcaac aaaggttgta ccatctaaaa attcatcatc taaaaccaat
      181 ttatcatatt ttttccccat tgcattgaca gatacaatcc aatttatttc accagttgcc
      241 ggattccatt taccgacctt cccaccgtta gctaaaatac tagtttccgg tgttgcttct
      301 gcctttattg tttctgaata ctgggttaaa ctaccgtcaa aatatgaaaa cgaggcttta
      361 ttatctagtg tttttgctcc atcagttaaa tcaatttttg ttttcatttt cacaacaatt
      421 ttattatctg ttgtcgcata gttaccgata agtttaattt taaacccagc tggcgagacg
      481 tctttttgga tggtaaagtc tctaccttct gttaataatt tgtagcctga atcagaagga
      541 taagcgtaca cattgtagct gactaaactt tttacacctg tagaaaactc gtcaacgata
      601 ttaatgtttt gcatattaat accttccgaa ttaactgtaa tagtccaatc cattgtatta
      661 ttataataat caatctctcc agcttcttta tttagtaagt ctggcttgaa atcaaagttt
      721 tctgttgctt taacaccttt ttcatccgtt acttcatttt taatttttcg tggactaaaa
      781 tcggttagtt ttgtagaata cgttacttga tatgcttttt catcagtttt cttgtagttc
      841 atattaaaac taccgttgtc tgatatagtc gaaacagtcc aatcattaga cgcatcatcg
      901 cctattactg cttctcctga ttcttcatta aaagtgactc gcttaatctt caaagaatct
      961 gcaacataac taacattatc gtctgttaat acatctgtta aaaccgtacc aggagtcaag
     1021 tttgctaaat cataattaac attaattgtc caatcaatac attgagttac agggttataa
     1081 actgcttttt taattaaatg atcatatgct tttattgtta ctgaaatggt catacttcca
     1141 tttgataaca tgccagaact tccaactgtt gttgctgaag tcccgatagt actcaaagac
     1201 gaatttgtct tatcaatgga acgctcatag gtaacttgat acccttttgc ttttagacct
     1261 tcttttaatt taattgttaa tcctgaaggt acataaatca attcataatc tgtattctca
     1321 gtaagtaatt gctttgagcc aatgaatgtt cctttagcac taatatctgt tgagtagacc
     1381 ttaatactat tcctattaat aatagtcgaa cccccgtaag cagtatccga tagtctaagt
     1441 tcgcctagtt cactagtttc tttagttaaa ttaaatctcg catccacagt agctttatcc
     1501 ggattgactt tactcggcat cgcttctagc attacctgtg tggctttgtc tacttcagga
     1561 ataatctcta actggtaaac tgtattacca cccgctgtat taaacaccgc tacctgacta
     1621 gttttttctg tctcagagaa actttttaaa gcagtactaa gctcaatatc ataattacct
     1681 tcttgcacac catctttaaa aaaagtaatg gttaattcac gtgtgcttgc attcaaatcc
     1741 catttcgctt cagttgaagg taagaaatct cctgttaaat tagtcgttcc aaagttgaat
     1801 gaatctggta aaaccgtttt aaatgtatct ccagctttgt agtttttccc tgagaaagta
     1861 aaattcattt tcagaactac tgctccgcca ttttttatac ggttagtcgc accaagttca
     1921 tttccagttc cattttccac ctttactgca gtaaaaatat tatctgttat aactgctttc
     1981 agattccctt ttttagaggg ttgttctgta acagatggag ttttttctgc ctcttttttt
     2041 gttgaactag aagttatagc ctcttcttta acagctaaag tgacgttata agtttgttcg
     2101 tctaaagtat atcctggagc agccttcttt tccttaacaa tatattctcc ttctgaaagt
     2161 gaattttcta taattgtccc gtgttcagtt atagaaactt cttttgtttc tccagttttt
     2221 ttgtttttaa tttcaaaaga agaaccattg attttttctt ttgtatcttt atcttctttg
     2281 attattttaa gcgttatcat tgttgttttt tcatcaacaa tggttgctaa tacaggcgac
     2341 acgttttgaa aaacgagtaa accaataatt gcaacgataa aaaaacctct ccatttcacc
     2401 atatatttca ttaagctgtt ttcctcctat gcaagttgtg tctgttgtat aagacctatg
     2461 acttgttgaa ttataacaat gggcgagaag tcgaaaatgt tcttaaagaa caacaaagcg
     2521 gatttattgt gtctttttag tgaacaaaaa agtatgtttt ttgctaaaaa tatacttttt
     2581 caatacaaaa ccctcttttc ctgcattatt atatggaatt ttttctatat ataatagata
     2641 aaaaagtcgc tatcctgtta agaatagcga ctacaattat taatcattta cttttttgga
     2701 ttttcttagt aagaaaagtc ctagtgtact agcgaataat ccggtaatga ttagattagc
     2761 tagggaatta tctcctgttg aaggaagact ttgtgctttt ttcactgtgg cttgttttga
     2821 agggtttgct gatggttttg ttggtttaga aggtttaatt ggtttagtag ggtcgacaac
     2881 gagtggtgat ttatttttct catatacaaa ggttactttt tgatctgctt ctttgtatat
     2941 gccgacttta ttcgtagggt ctttcgttag tttataaccc gcgatagatt tcgctttagt
     3001 tacatatttc tccccgacta aacctgcatg aatctcttgt tctgctaata catttccttt
     3061 tgtatcaaca aattcagcta ttaccttgcc gcttacaact gttttaatat ttgttttagt
     3121 tacttgaagc acttgatttt gattaaaact gattttcaca tcgactggaa cggtatctaa
     3181 ttcataacct tttggtgctt tcgtttcaat taattgataa tcaccagggg ctagattagt
     3241 tatttccagt ttaccagaag catctgttgt tagattttct gtgacgttat tatctgcgtc
     3301 tactaattta aacgttgcat ctgcaagagg ggcttttgtt tgcccatcag tcttagttaa
     3361 cacaacagat ccagtagaca ttttatttgt tttagtcact tgaactgcat ctttttggtt
     3421 aaattcaatg gtgaattcaa ctggtgttgc atcaagctca taacctgttg gagctttcgt
     3481 ttctactaat tggtagtcgc ctggtgctaa gttatcaatt tgcagttgac catttgcttc
     3541 tgtcactact ttatctttca aactgacacc aagttttgtt tgtaattcga actctgcacc
     3601 agctaaatta cttcttgatt tactatctag cttagttaag accacactac cagttttcgc
     3661 aacattttct tttgttactt tgactgcagt cgattggtta aattcgatgg taaaagtaac
     3721 cggtgtggca tctaattcgt agcctgttgg tgctttggtt tcaatgaact tgtaatcgcc
     3781 tggtgctaaa tcagctactt ctatctcacc acttgcattc gttgttaaat tatcttttac
     3841 tttagttcca gtggcagttt gtagttcaaa ttccgcatca gataacgcag cttttgttgc
     3901 actatcttgt tttgttagaa ctacgctgcc agattttgct gtgttttctt ttgttacgac
     3961 agctgctttg tcttggttaa attcaatcgt gaattcgctt ggcgttgcat ctaatacata
     4021 gccagccgca gctttcgttt ctacaaattg gtagtctcct ggtgctaaat cgtttgcttc
     4081 gattttaccg tctgcgtctg ttactaagtt ttcggatact tttgttccgt ctgctttttg
     4141 taaatcgaat tccgctccgg ctatcgtagc tttcgttaca ctatcttctt tcgttagaac
     4201 cacactacca gttttcgctg tgttttcttt tgtaacaatt acagcggctt cttggttaaa
     4261 ttcaatcgtg aatttgcttg gcgttgcatc taatacatag ccagttggcg cttttgtttc
     4321 tacaaattgg taatcgcctg gcgctaagtc agttacttcg attttaccat ctgcattaga
     4381 tactaagttt tcagcgactt ttgtaccgtc tgcattttgt aattcgaatt ctgctcctgc
     4441 gatagcgtct ttcgttacac tatcttcttt taaaagaacc gcgctaccag tttgctctgt
     4501 gttttcaatt gtaacgtttg taactgcatc ggcggtaacc gtgatttctt taccgtcttt
     4561 atattcatca ctaattgtgt aacctgttgg cgcttctgtc tcaactagtt tatatttccc
     4621 agattgaagg ccatccatca cgattttacc atctgtatca gtggtagcct cttgtcccgc
     4681 tttatcacct tcaagcgtat aaagttggaa tttagctcct gctagttttt tcgtattatc
     4741 ctttttatcc actttggtaa tttcaagtga accaattgtt gccgtcccgc taccactacc
     4801 aatagtgaag gctggcgata tgcttgttgt tcttgattta tatgtcattg gtaaactacc
     4861 gtagtcagga gaagcagttg tcgctgtgtt actaacaagc ccagacatca agctgattgt
     4921 actataggtt actttaattg gtgcagttgc tttatagtct ttgaactgga tagtgaaatt
     4981 attgtctgtg taagtgatgt cataatattt tgagtcaata tcttcacccg tcgtttcatt
     5041 gattacttta aagctacttt ttactacttg cgctcctgtt gttcctgttt tcattgtatc
     5101 tgtaattgtt ggattgttaa taggacgatc tgcagagata ttgttcagtg taacaaccca
     5161 gttaacttta ttatcaaaag atggatcaat agtagccgtt tttgtcatcg cattataaag
     5221 tttgcttgcg tatgcttggt aactgtaaga tttttcgcct actccattat cgctcacctt
     5281 cgcagtgttt tgtacgtagg agtagaaata ccagttttcg tttggtttgg tactgtattt
     5341 aataaatacg cgtgaattct ccaagttagc gaattctaaa tgtaatttat tcccagtagt
     5401 atcgactttt gttgggtagt ttttatcacc tgttttagct actgttccaa cagagttaag
     5461 cgggatgtat aaattcatca tctcacttgt ggaagccaca ttacgatatt gtagtgagcc
     5521 ttctacgtat gttaatccag ttggaatagc atcatcaaaa attaagttgt catagttttt
     5581 cgccatagca tttacagata caatccaatc gatattcccc gtagtggagt tgtacgatcc
     5641 gtatttacca ccatttgtca tcatagctgg gtctggtgtc atggaagctt ttacatcatc
     5701 aacatacttg ataattccgc catcgtaata agaaatggat gctttattat caatcgtttt
     5761 tgttacatca gaaaggtcaa tttctgtgac gaaatcaact acaatttttt tgtctgttgt
     5821 agcataatcg ccgataagtt gaatataaaa accagctggt gtcacatctt tatcaatcgt
     5881 ataatctttg ccttctgtta ataagacgct attgatatta tctgtatagg cacgaacagt
     5941 gtagctctta agggctttta caccagtaga aaattcatct gtgatattaa gattccccat
     6001 cttaattctg tcagagttgg cagtgatttt ccatgtcatc gtgttattaa aatagtcaat
     6061 tgttccagct tcttttttca gtaaatctgg ttgaatcgcg atcgttgcgt cagcggaaac
     6121 accattttca tctgtaattt catttttaat tttacgatca ctaaagtccg tgattttcgt
     6181 ggaataagtg atttcatatg cgtttgtgtt tgtgttttta tacgttaaat taaaattccc
     6241 atttgccgag attgctgaag ttgtccaatc acttgaagcg tcacctccaa cgattggcga
     6301 tccattcgtt gcgttaaaag ttactcgttt aattttaagt gaatctgcta catattcgac
     6361 atcattatcc gctaaaacat cggtaagcac tgttgaagga gatatttcgt cttgatcaaa
     6421 gttaaagtta attttccaat caatactttg tgttgagccg ttgtaagtag cttttttctc
     6481 gatatgctta taatttgtca ttgtcaggta aacataagcg gagttgcttg ataatgttcc
     6541 tgaatcgcct actgtataag cttgtgtaga catataagaa agtgaatcac ttggtttatt
     6601 gattgtgcgg tcatatgtta cttggtagcc tttcccagca agcccaccgt ttaacgtaac
     6661 agttagagaa gttgcggaat aagttagcgt ataatctgtg ccttctacaa gtaatttttt
     6721 cgtacctatg aaggttcccc cagcactaac atcactcgaa tatactttga tggtatcttt
     6781 atcaatagtt gttgttccac cggaagcata atcattaagt ttcagctcac ccttagcatc
     6841 tttttctttt gttaagttga acttggcatc tacttgacct tttgtcggat ttactacccc
     6901 tggattcgcc gtaattccta cagttgttgg gtagttaact actggtacaa cttcgatttg
     6961 ataaacagta tctttcccag ctgtcttgaa aacaacttcc tgtatcgttt cttctgttga
     7021 ggtaaacact ttgaaggctg tactgatatt cacatcataa tcgccttctt gaatgccatc
     7081 ttttaagaaa gtaatcgtaa gttcacgcgt tgtaacgtca agcgtccatt ctgcttctgt
     7141 agatggtaag aagttaccac ttaaattttt gttcccaaag ttgaaagcat ctggtaaaac
     7201 agttgtaaac gtatctcccg ctttataatt tttcccagaa aacgcaaagt tcatgttaag
     7261 cacaacaccg ctaccatttt gaattcggtc tgaagtgttg atttcatcgc cattaccatc
     7321 ttttagcgtt actttgttaa aaatattgtc tgtaatagca gcttttagat ttgcattttg
     7381 tgttgctttt ttaaccggtg ttggtgttgt tgcttctttt gttgtttctt cttgcacttt
     7441 tgctgaaacc gaagtaatca cttcttcttt ttctgctaaa gttacactat attctttttc
     7501 atctagtgtg taaccttttg gcgcaacttt ttctttaaca agatagtcac caggtgaaag
     7561 tgaatccata gtcgcttcac cattcgcgct gattgttaaa tcgtttgttt cgcccgtttc
     7621 tttattcttt atctcaaagg tagaaccatt gattttttct tttgtatctt tatcttcttt
     7681 ggtgattttt aatgttgttt ttgccgtttc atcgtctgtc attgtagcta gtacaggtga
     7741 aacgttttgg aatactagta atccgataac cattgcaata actagcttct tccagtgtct
     7801 gatatttttc actttgtttt gtcctcctat aatctatttc taactgttgt taaatcccta
     7861 aaagatttgt tgagttttga caaataaatg cacccaataa ttactttttg cgaaatccaa
     7921 agtaatatgt gtctttttaa taagcaaaat gaattggaaa cactttaaac accttttaaa
     7981 atacttttaa tatcatcttt tctttgcaag tacaaaagca cttgaaagta agagcattcc
     8041 aagaataaac cataaattag ttttcttaga atctcccgtt tgtggcagtt tttccgattt
     8101 tttcacattt ccagctcttt cattagaaga aactgataaa gcgctagttt tttcatacac
     8161 ataagttact ttttgtgagc tattcaaaaa tttccccgat gcatttttag gtgtttgata
     8221 caatttatat cccgagattt ttttggccga agttcgataa cttgaattta attttcctgt
     8281 taaaacaatc gaatcagcta atttttcacc attcttatcg acataatcga caatgatgtt
     8341 tccggctgtc actttttgat aaacaaaagt aactgtctgt gctttttcgt taaatgttcc
     8401 acttacattc gcgggtgttt ttacaagggt gtagttagta atttttttct gttttgcagt
     8461 gaatttttct ccgtaagctc ctgttaatgt ttctgggctg gcaatttgtt tatggttttg
     8521 atcaacatat tgcaccgtaa ctggcgcaac actatcatct aaagccactc ctacttgggc
     8581 cggctcaatt acttgagaat tatttacagc cacagcaaat gaattccatg ctgctcggtc
     8641 ttcttttttt gtttgctgat ttaaaaatcc cttatctatt tggtttttct ttggtgtttt
     8701 taaatcaaat tgaattttca tggatttccc aggaatccac tcaatacctt cttttaattc
     8761 cattttaaaa gagtaaattt tggaccaatc ttgtacttct gatgcggtta accaatctgc
     8821 ttccgttgct tctgcgttat caactagagg ctctgaacca gttggataaa tcgtgtgctt
     8881 atcgagaacg cccgcacgtt tagggttttt ggcagtacta tattttacgt caaccttatc
     8941 tttccattca tttggaattg ccactgcttt cgttagctcc aagttgaatt tactaccacg
     9001 ttcgctgtta tctgtaattc ctaaatcatt ttcacttggt aaaacatcca ttaaaaccat
     9061 attagctatt ttttcatctg aatcattttc cagtgacaat tgatatgaaa ca
//
LOCUS       DASDXX010000109         8898 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.109, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000109 DASDXX010000000
VERSION     DASDXX010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8898
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.109"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            141..1037
                     /locus_tag="U0280_001935"
     CDS             141..1037
                     /locus_tag="U0280_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg family transcriptional regulator"
                     /protein_id="HEM2271863.1"
                     /translation="MVGYGKTVRDIRTSKGIHQKDLYDNIISKSFAIEFEKGKHDITL
                     TLFEKILKRMNMDLDEFFYIHRELSVSAEKNYLCMNQERGNIYDLASLELLYSELSKH
                     NGELVEVWKAFVRSRIKLVEHLFKYHEFTVDVITPKDKCTIQKYLFSIDTWTLEELKI
                     CANSIYFFEEDLQIQFLNQVIKAIHSYKNYDRARRVLCTLLINTIEMFISRGQIASAS
                     KLIILLDSLCLYNESAFYRNISHFLKGLVKMQNNHIQEGYNQAKKAIQIMNDLRFEEI
                     AYLYEILLDQFIRIKGIDIVKS"
     gene            complement(1034..1663)
                     /locus_tag="U0280_001936"
     CDS             complement(1034..1663)
                     /locus_tag="U0280_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEM2271864.1"
                     /translation="MNVNEQKVLVLNNLVEHYGYQDWWEADNRLADWLSMILIQRTTE
                     KNAKQALANLAPYLDLDSLIEMDKAKLEELIYPAGFYKQKSIYIKALAEWFYGHGASL
                     DKFQTYSTEALRKELLGIKGVGEETADAMLLYIFERNVFIADLYARRLFTRLGFGEYT
                     TYEQMREEFMPIIENIPHKLCKEWHSVIDVHGKHFGKDKSMNESWLLES"
     gene            complement(1706..2122)
                     /locus_tag="U0280_001937"
     CDS             complement(1706..2122)
                     /locus_tag="U0280_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271865.1"
                     /translation="MSIIARELTKAEEAEIIRLKEEGEVMLQTDGTPEERIEKIAEYL
                     KQTSPDPDLAEELGYILGSLYGEAVREKYEWRWLFVSENDLEGYAITSKEHGYTFMVH
                     DYFMQVIVQNKPDNSKMLFELMVDMTGNRNDFRMIG"
     gene            2242..2805
                     /locus_tag="U0280_001938"
     CDS             2242..2805
                     /locus_tag="U0280_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HEM2271866.1"
                     /translation="MEQNKEKLTKPTSEKNYFWPIMIISFVAVVVILLLFFSPIGYQG
                     AVHFDITIFPRMNAIFNSFTFVFLVIALWAIIKKKNIKMHRGFILAAFTSTLFFLVTY
                     LTFHYLSAETSTFGGTGIIRPIYFFILITHSFLAAIVVPLALFALVWGWTMQIEKHKK
                     IVRWTMPIWLYVSLTGVLVYLFMAPYY"
     gene            complement(2851..3558)
                     /locus_tag="U0280_001939"
     CDS             complement(2851..3558)
                     /locus_tag="U0280_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEM2271867.1"
                     /translation="MKPIFAVGDVHGEITLLDELLENWDKEQERLLFVGDLIDRGENP
                     AAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSL
                     DKKMTPEGLAERVKEEAAELIDFIRNLPLYYEEGKYVFVHAGVDLTKKDWHDTEERDF
                     FWIREPFLFGQNKTGKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELH
                     GIVVEEKVITKSFSVKK"
     gene            complement(3626..3835)
                     /locus_tag="U0280_001940"
     CDS             complement(3626..3835)
                     /locus_tag="U0280_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271868.1"
                     /translation="MAHENLRELEDQLIELRQTYQEVISETREFEDPQLQNGPINAAE
                     VRLSALRHEIAEVEKKIKKAESKTE"
     gene            4026..5018
                     /locus_tag="U0280_001941"
     CDS             4026..5018
                     /locus_tag="U0280_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM2271869.1"
                     /translation="MTISQVKQTAKESLRGNWGIAIGIFVLAWLIETVGGGLIGWIPV
                     IGWIAIFLLTGPLYTGVAWVYLAISRREQPDVAYMFSGFKQFGRTVLAYLLISIFTFL
                     WSLLLIVPGIIKTYSYSQTFFILRDNPNISALDAITESRHMMNGHKGRLFGLSLTFLL
                     WYLIPLAVAIAGTVIVAGGMATTSYTADPAEVLSALAAGATFGGLVLILASWLITLGI
                     SLYVYPYLITSIAVFYDDLYAATEGTFTEETVIVEEEVNPFGTTEADPFAEDTHPEGF
                     GPEATKEPETPVVPEAPEAPETPETPEVPETPEAPETPEAPETPEAPKDNNEPK"
     gene            5005..5541
                     /locus_tag="U0280_001942"
     CDS             5005..5541
                     /locus_tag="U0280_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271870.1"
                     /translation="MNQNKITAGGLEFLVRFALPTDRLKIHDLMMDTARWLKESGSTQ
                     WSDILHGFDVHNIEQRIELGEVALFETEAGALAGAMIIRKTPSDWDTDLWEDLAIDKA
                     YYLHRIMVSRAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIESNETLNQMYVRYGFQ
                     FSGKKNGFYLYQKELSQK"
     gene            complement(5551..6198)
                     /locus_tag="U0280_001943"
     CDS             complement(5551..6198)
                     /locus_tag="U0280_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271871.1"
                     /translation="MANKFKTLDKMVYNLLLEKIKNGELVANEHLAEEKLAREFGVSR
                     SPIRKAIATLTAQGIVSYHENSGAVLNDCIVDSDRYVQLMETIEIFVDAAIAKAAHFG
                     YEMDLEKLYARMQEMERLSYLTDIENYYDAHHRFILCLISFAENPYQVRIVKQIFFQM
                     IHFSDGINMFKSVEIREWTNKKSNQICELLAEEETELARKTIKSMFAELTIQAYR"
     gene            complement(6244..>8898)
                     /locus_tag="U0280_001944"
     CDS             complement(6244..>8898)
                     /locus_tag="U0280_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM2271872.1"
                     /translation="RRLFKAPLALLLVIALIILPSLYAWFNIEALWDPYSNTSGIKVA
                     VSIDDEGAEIDVPGKKPQQVNVGDQLKKTLEKNKKLGWTFVSEDEAKKGVKSGKYYAS
                     IHIPKDFSEDMVSVVNDNVTKPTIDYSVNEKINAIAPKMTESGATTIVNQISSEFVGT
                     VSKAVLEEFNKAGIDLENELPTIRRLKTKVFQVQDALPELKKMGAEAVKIEAKLPELK
                     AKANQVVELNEKIPELNKATENVLLVEQQLPKIDQLGQDILVLQKKIPEIKQIAESVK
                     EVDENFGTIKKTVNDAVNESGKALDVIDTAMAAIPTVEKIAQNGSGYVDKVSDFADEI
                     NKSFDTLAPAIKQNLTLMKQMADNIYQVTEAIKNGSITPEQAITELKKMEQDIDSLQQ
                     MITKQTATLESLNETLPNKPFTDLIANLKTINSQLGAQKETITKVRTELEDGAQPSEE
                     LLNQLNEQAKKVSAKLDQILANYDSEIVPAIKVGLNQIQGDLKDSQKLLETLQAKIPE
                     ITQVLKDSRETLQTGQTYLKEFQERLPEIQKTLDEATKVINTKLDTIIAGINEAANFY
                     QNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKAIKIAADLSREEL
                     PEFEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVKLKETSYYPIPNY
                     GSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQALI
                     VTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQIS
                     GAGGNFPIQVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWIDMSVLAGFAILFI
                     TLGILLKKPLDKVVPKLSEKAKRSKLIH"
BASE COUNT         2537 a         1830 c         1545 g         2986 t
ORIGIN      
        1 tttcataaag tcctaaaaat aggacttctt ccgccaaatt ttctatgcta cgatttaaaa
       61 gtaaaatggc tgttaaactc cttgcaacac ctcttagatg cagcccacat ctaaattatg
      121 aaacaaaagg agtaacttga atggtcgggt atggaaaaac agtgagagat attcgcactt
      181 ctaaaggaat acatcaaaaa gatttatacg ataatatcat ttccaaatcc ttcgctatcg
      241 aatttgaaaa aggaaagcac gacatcacac taaccttatt tgaaaaaatt ttaaaacgga
      301 tgaatatgga cttggacgag ttcttttata tccatagaga attgtcagta tcagctgaga
      361 aaaattattt atgcatgaat caagaacgcg gaaatatata tgatcttgca agtttggaac
      421 tattatatag cgagctttct aaacataatg gcgaattagt ggaggtctgg aaagcatttg
      481 ttcgttcgcg aattaaattg gtcgaacatc tctttaaata tcatgaattt acagtagacg
      541 tgattacacc taaagataaa tgcacgattc aaaagtattt attttcgatt gatacgtgga
      601 cacttgaaga acttaagatt tgcgctaact ccatctactt ttttgaagaa gatttacaaa
      661 ttcaattttt aaaccaggtc attaaggcca ttcactctta taaaaactac gaccgtgcca
      721 gacgtgtttt atgtacgctt ttaattaata cgattgaaat gtttatttcg cgcggtcaaa
      781 tagcttctgc tagtaaactc atcatcctat tagactcttt atgtctgtat aacgaaagcg
      841 ccttttaccg aaatatctct cattttttaa aagggttagt aaaaatgcaa aataatcata
      901 tccaagaagg atacaatcaa gcaaaaaaag ccattcaaat tatgaatgac ctccgttttg
      961 aagagattgc ttatttatat gaaattttgt tggatcagtt tatcaggata aaaggtatag
     1021 atattgttaa gagctagctt tctagcagcc aagattcatt catacttttg tctttcccaa
     1081 aatgttttcc gtgaacatca atgactgagt gccattcttt acaaagttta tgtggaatat
     1141 tttcgattat cggcatgaat tcctcgcgca tttgttcata agttgtatat tcaccaaaac
     1201 ccaacctagt aaatagtcgt ctggcatata aatcagctat aaacacattc cgctcaaaaa
     1261 tatacagcaa cattgcatcc gccgtttctt ccccgacacc ctttatgcct aacaactctt
     1321 ttcgtaaagc ttccgttgaa tacgtctgaa acttatctaa actagctccg tgaccataga
     1381 accactcagc aagtgcttta atatagatac ttttttgttt ataaaaaccc gctggataga
     1441 ttaattcttc caatttcgct ttatccattt caattaagct atctaaatct aaatatggtg
     1501 caaggttcgc taatgcttgt ttggcatttt tctctgtcgt acgctggatt aatatcatcg
     1561 aaagccaatc agccagacga ttatccgctt cccaccaatc ttgataacca taatgctcca
     1621 ctaaattatt taaaactaac actttttgtt cgtttacatt caccttgcat cacctcaaaa
     1681 aggaatcaaa aaacagttat tctccttaac caatcatccg aaaatcgttt cgattcccag
     1741 tcatatcaac catcaattca aatagcattt tgctattatc tggcttattc tgaacgatta
     1801 cttgcataaa ataatcatgc accataaatg tatagccatg ctctttcgac gtaatcgcgt
     1861 agccttctaa atcattttct gagacaaaca gccagcgcca ctcatacttt tcacgcactg
     1921 cctctccgta caaagagcct aaaatataac caagctcttc tgctaaatca gggtctggcg
     1981 aggtttgttt taagtactca gcaattttct cgatgcgttc ttctggagtt ccgtctgttt
     2041 ggagcatcac ttcgccttct tcttttaaac ggataatttc agcttcttcc gctttcgtta
     2101 gttctcgtgc aataatcgac attagaaaca ccctttcccc acccattata actcaaaagc
     2161 tcaatctttc gcatccgata tgttcgtcat gtataatgaa agaagtacag caatttttat
     2221 atttaggggg ctattttttt catggaacaa aataaagaaa aactcacaaa accgacatca
     2281 gaaaaaaact atttttggcc gataatgatt atttcatttg tcgcggttgt ggtgatttta
     2341 ctactcttct tctcaccaat cgggtatcaa ggagcagtgc atttcgacat tactatcttc
     2401 ccgcgaatga acgccatctt taatagtttt acctttgtat ttttagttat tgcactttgg
     2461 gcgattataa aaaagaaaaa cattaaaatg caccgtggct tcattttagc agcatttaca
     2521 tctacattat tcttcttagt aacttactta acattccatt atctttcagc agaaacttct
     2581 acatttggcg gaactggaat tatccgtcct atctacttct tcattttaat tacacatagt
     2641 ttcttagcag caatcgttgt tccactagcg ctatttgcac ttgtttgggg ctggacgatg
     2701 caaattgaga aacacaaaaa aatcgttcgc tggacgatgc cgatttggct atatgtcagc
     2761 ttaactggcg tactcgttta cttatttatg gcaccgtatt attaaacaaa aaagcatcga
     2821 atgagcgctt caaaagagcc cattcgatgc ttattttttt acagaaaaac ttttcgtgat
     2881 gactttttct tccacgacaa tcccgtgaag ttctccgcca aaaaccgcgc caccatctat
     2941 atcgagcctc gttttatctt ccgaaaccca aataccagaa ctttcatcaa tatgtaaatt
     3001 ttgtaccggg gtatgcccga aaataaagac tttcccggtt ttattctgtc caaataagaa
     3061 aggttcgcga atccagaaaa aatcacgctc ctcggtatcg tgccaatctt ttttcgtcaa
     3121 atctacgcct gcatgtacaa atacatattt gccttcttca taatagagtg gcaagttccg
     3181 gatgaaatca atgagttcag cagcttcttc ttttacccgt tccgcaagtc cctccggcgt
     3241 catttttttg tcaagcgagt ccgcgattaa ggattgaatt gtttccatac cgccttgact
     3301 taaataataa tgcattttcc cagaagggtt ttcgagaaaa tctagtaaca tttgttcgtg
     3361 atttcctttt aagacaatcg ctcccgtttg gtcggctaat gctttcactc ttctaagtac
     3421 tgcagctggg ttttcgccgc ggtcaatcaa atcccctaca aacaaaagcc gttcttgctc
     3481 tttatcccag ttttcgagta attcatctaa aagcgtaatc tctccgtgta catctcctac
     3541 agcaaaaatt ggcttcatgc ttatacctcc agatctacgt aaaagaaacg cccctctgca
     3601 aaataaacaa atggacgctt ttttcttatt cggttttgct ttctgctttt ttgattttct
     3661 tctctacttc ggcaatttcg tgacgtaatg cacttaatct aacctcagct gcattgattg
     3721 gtccattttg gagttgtggg tcttcaaact ctcgtgtttc actgattacc tcttgatatg
     3781 tttgtcgcaa ttcaatcaat tgatcttcta gttctcttaa attctcatgg gccatacgcg
     3841 ccacctccaa attaatcata ctacacaatt ttacttttcc ccattaaata gaaatataat
     3901 ccttttttta gcattttttt gtaacacttc ttattactgt attagtccta gaaaatgtgc
     3961 tattttaaag gtaggtattt ttgctattat acttaaaaat aaatgaaaaa ggagttttta
     4021 ctatgatgac tatttcacaa gtaaaacaga cagcaaaaga gtcgcttcgt ggcaactggg
     4081 gaattgccat tggaatattt gtacttgctt ggctaatcga aactgttggt ggaggattaa
     4141 ttggttggat cccagtcatt ggttggattg caatattcct actaactgga ccactttata
     4201 ctggggttgc ttgggtgtac ctagcaatta gccgccgtga acaaccagat gttgcttata
     4261 tgtttagtgg ttttaaacaa tttggacgta cggtcttagc ttacttacta atctctattt
     4321 tcacattctt atggagctta ctcttaatcg taccaggaat tattaaaact tactcttatt
     4381 cacaaacatt ctttatctta cgagataacc caaatatttc tgcgctagat gctattacag
     4441 aaagccgcca catgatgaat ggacacaaag gtagactttt tggactatct cttacattcc
     4501 ttttatggta tttaattcct cttgctgttg cgattgcagg tacggttatc gttgctggcg
     4561 gaatggctac tacatcttat acagctgatc ctgctgaagt actttcagct cttgctgccg
     4621 gtgctacgtt tggtggactc gtgttaatct tagcatcgtg gttaattact cttggtattt
     4681 cgctttatgt ttatccttat ctaatcactt ctatcgctgt gttctacgat gatttatacg
     4741 cagcaacaga aggcactttt acagaagaaa cggtcatcgt ggaagaagaa gtaaatccat
     4801 ttggaacaac agaagctgat ccatttgctg aagatacaca tccagaaggc ttcggaccag
     4861 aagcaacaaa agaacccgaa acgcctgtag taccagaagc tcctgaggct cctgaaacac
     4921 cagaaacgcc ggaagttcct gaaactcctg aggcacccga gactccggaa gcacccgaaa
     4981 caccggaagc tccaaaagat aacaatgaac caaaataaaa ttacggctgg cggactggaa
     5041 tttctagtcc gctttgcttt gccaactgat cgactaaaaa tacatgactt aatgatggat
     5101 acagctcgct ggttaaaaga gtcggggtca acccagtgga gcgacatttt gcatggtttt
     5161 gatgtccata atatcgaaca acgtattgaa cttggtgaag ttgccctttt tgaaacggaa
     5221 gcgggtgcac ttgcgggcgc aatgattatt cgaaaaacgc caagtgattg ggatacggat
     5281 ttatgggaag atttggcaat tgataaagca tattatttac accggattat ggtttctcga
     5341 gcattttccg gaatttcatt aagtaaacaa atgatttatt ttgcggaaaa attaggtatc
     5401 gaaatgtccg ttcctttcat tcggttagat tgcatcgaaa gcaatgagac gctcaatcaa
     5461 atgtatgtcc gctatggttt tcaattttct ggtaagaaaa acggttttta tttatatcaa
     5521 aaagagctgt cacaaaagtg acagctcttt ttatctgtag gcttgaatcg ttaattccgc
     5581 aaacatagac ttaattgttt tcctggctaa ttcagtttcc tcttctgcga gcaactcaca
     5641 aatttggtta cttttcttgt tagtccattc tctaatttcg acggatttaa acatattaat
     5701 tccatctgaa aaatgaatca tttggaagaa aatttgcttg acgatacgga cttgataggg
     5761 attttccgca aaactgatta aacaaagaat aaagcgatga tgtgcatcat aataattttc
     5821 tatgtcagtt agatacgaaa ggcgctccat ctcttgcata cgagcataca atttctccaa
     5881 atccatttca taaccgaaat gagctgcttt cgcaattgct gcatcaacaa aaatttcaat
     5941 ggtttccatc aattgcacat agcgatccga atcaacaata caatcattta aaacagcacc
     6001 gctattttcg tgataactaa caataccttg agcagtaagc gttgcaatgg cttttcttat
     6061 tggcgaccgg ctaacaccga attccctagc caacttttct tctgctaaat gttcattcgc
     6121 cactaactcg ccgtttttga ttttttcaag aagtagatta tacaccatct tatctaatgt
     6181 tttaaatttg tttgccacaa agtctgcccc ctcttcgctc gtaattatat cacagaaaaa
     6241 atattaatgg atgagcttgc ttcgttttgc tttttctgat agcttgggta ctactttgtc
     6301 tagtggtttt ttgagtaaaa tgcctagcgt gataaagaga atggcaaatc cggcaagaac
     6361 actcatatcg atccaaaccg ttggcatata aagcccccca acactttccc gaattaaact
     6421 aacggcataa gtgaatggca agaaaggata aatagcttgg aaaaatggtg gcgaaacttg
     6481 aattggaaag ttcccgcctg ctcctgaaat ttgtaaaact aacaagataa tcgcaatccc
     6541 ttttccaaca ttattaaata gcgatacgag cgtgtagaca attgtcatga acaccacgct
     6601 gataaacatg ctgaatagta catgtagtaa tggttctgcg atggataccc cgagcaagaa
     6661 aatattcccg agcgtcacga taagcgcctg cattaatccg atagatagga aggtcagcaa
     6721 tcggccaaaa tatcggtgat aatggctgaa aattcctgcc ggcacttcta catccacacg
     6781 taataacgaa atcaacaaga gcgcaccgac ccataaacaa agagctgtat aaaatggcga
     6841 acttgccgaa ccataatttg gaattggata gtagcttgtt tcttttaact taactggatt
     6901 ggcaataaat gaactatctt tatctgcgtc atttctgagc atcttaataa tgctttgcaa
     6961 atcgtaattt ttatcgaaat cggtaatttt attcgctgca ttattaatgg ctttttcgaa
     7021 ttccggcaat tcttccctcg aaagatcggc cgcaatttta atcgcttttt cgaattccgg
     7081 cattttttct tggatgagat tggaggcttg atttatttct ttttcaagcc ctggtaaatc
     7141 atcacgaatg aagttggccg ctttttttat gttcgctttt acattcggat aatcgttttg
     7201 gtaaaagttg gctgcttcgt taatgcctgc gataatcgtg tcgagcttgg tgttgattac
     7261 ttttgtcgct tcatctaacg ttttttgaat ttctggtaag cgttcttgga attcttttaa
     7321 gtatgtttga ccggtttgta gtgtttccct cgaatctttt aaaacctgcg taatttctgg
     7381 gattttcgct tgtagggttt ctaatagttt ctggctgtct ttcaaatctc cttgaatttg
     7441 gtttaagccg actttaattg ctggaacgat ttcagaatca tagttcgcta aaatttggtc
     7501 taacttcgcg ctaacttttt tcgcttgttc attcagttga tttaaaagtt cctcggaagg
     7561 ttgagcgcca tcttcaagtt ctgtgcgtac ttttgtaatc gtttcttttt gcgcgcctaa
     7621 ctggctatta atcgttttta aattcgcaat taaatcagta aatggcttat tcggcaatgt
     7681 ttcatttaaa ctttctaatg tcgctgtttg tttcgtaatc atttgctgca aggaatcaat
     7741 atcttgctcc atttttttca attccgtaat agcttgttct ggcgtgattg agccattctt
     7801 gattgcttct gtcacttgat agatgttgtc cgccatttgc ttcattagcg ttaagttttg
     7861 tttaatagca ggcgctaacg tatcaaagga cttattgatt tcatccgcaa aatcagatac
     7921 tttatccaca tagccgctgc cattttgagc aattttttct accgttggaa ttgccgccat
     7981 tgctgtatca atcacatcaa gcgctttgcc cgattcattc actgcgtcat tgaccgtttt
     8041 cttaatcgtt ccgaagtttt catctacttc ttttaccgat tcggcgattt gtttgatttc
     8101 cgggattttc ttttggagca ctaaaatatc ttgcccgagt tggtcaattt ttggtagttg
     8161 ttgttccact aataagacgt tttctgttgc tttatttagt tcaggaattt tttcatttag
     8221 ctcgacaact tggtttgctt tggcttttag ttcgggtagt ttggcttcta ttttgaccgc
     8281 ttctgctccc atttttttca gttctggtaa agcatcctgc acttggaata ccttggtttt
     8341 taggcgacga attgttggca attcattttc aagatcaatc cccgctttat taaactcttc
     8401 caaaacggct ttactaactg tgccgacaaa ctcagaacta atttgattta caatcgtcgt
     8461 tgcgccactc tcggtcattt ttggcgcgat agcattgatt ttttcattga cggaataatc
     8521 gattgtcggt ttggtaacat tatcatttac gaccgaaacc atatcttctg aaaaatcttt
     8581 tggaatatga atagacgcgt agtatttccc acttttcacg ccttttttcg cttcatcctc
     8641 acttacaaaa gtccaaccga gttttttatt tttttctaac gttttcttga gctggtcccc
     8701 gacgttcact tgttgcggct ttttccctgg tacgtctatt tccgcgcctt catcatctat
     8761 cgaaactgcc actttgatcc ccgaagtgtt ggaatacgga tcccaaagtg cttcaatatt
     8821 aaaccaagca tataatgatg gcaaaataat taatgcaatt actaataata aagctaaagg
     8881 cgctttaaag agacggcg
//
LOCUS       DASDXX010000110         8876 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.110, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000110 DASDXX010000000
VERSION     DASDXX010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8876
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.110"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            20..733
                     /locus_tag="U0280_001945"
     CDS             20..733
                     /locus_tag="U0280_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxL domain-containing protein"
                     /protein_id="HEM2271873.1"
                     /translation="MIIKKTLIVGLIGISSVTLFAPAAFAVTSEGDSKATVKFKAGTG
                     VVNPVDPENPTKPIDPLDPSNPTDPGTGNTGSLTLDYVSSVNFGEHEVSSTEQSYSST
                     SRKPFIQISDRRGTGAGWKVTATATAFQNEDGAASLSGATLSFKNGETASASNTATTP
                     TAAQTVELPTDGTSIVSVVSAKESEGMGTWINRWFGATPNDTASLNNNVQLTIPAGSA
                     TLGDHEATITWTLSDAPGV"
     gene            801..1826
                     /locus_tag="U0280_001946"
     CDS             801..1826
                     /locus_tag="U0280_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF916 and DUF3324 domain-containing protein"
                     /protein_id="HEM2271874.1"
                     /translation="MKKSFLSLLFIIPLLVTCSNFAEAQAAEGDVGYSVQAHIPANQI
                     DKRQTYFDLKMQPKQKQTVNIDVMNSSNEEIQVEAAINYASTNRTGVIDYTKNDLTKK
                     DKSLEYPLPELAKIPDDQKLLTIPVDGKKTVQVMIEMPAESIDGVVLGAVEFKKKNTN
                     ETKKTKGVSLKNEYSYIVGMQLAETDKQVKPHMNLLSIKPALLNYHTAIVAKLQNDQP
                     VILENLSIDAKVYQQNSDKLLYQTKKANMKMAPNSNFDFGIDLENQPLKEGKYRLKMT
                     ATNGVETWTWDEAFTIGKEGQNLNKEAVNLEKTNTWLYVAIVAGVVLIALIIILVIRK
                     RRQKQEK"
     gene            1844..4309
                     /locus_tag="U0280_001947"
     CDS             1844..4309
                     /locus_tag="U0280_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271875.1"
                     /translation="MAFKKLILVLTIAALFLGFKIVVAAENGSRDLASNEAIVTNFTE
                     LKTAISEDNGIDTVYLGADVELSGGIIIPATKKTFTLSGKNPATGEIHTLTETMASAG
                     AQSSVITVNTNTGAKETTLRDINVVGKNYYGTISVYGAAKNVVQNYENVHYQGPQMIY
                     NLNGTANFKGTNDITIASVVSGSAAPNEVAEIKGVSVSGKLNINHASSNANSAFWFGG
                     GTAEVNTFTVEENAEVTILSNGTGMFYRSGTKPIDIDVKKNAKLAITSNNNIFRDTPG
                     GAVKIASGADVTMTKTAGGNPLLWVADDITVSPDARFILNKTGGTGYIIQFYNATAKL
                     DINDPRSFLITTNSNTPMFYWPYANTFNLNAQMVNYWDTVGTIDRTDLAAQSFSLPNG
                     ENVTGSLTYTGTTTKILSTNAGMTPTNFNQNTARMIAMGRLEGTINPVTDADNEITGT
                     ATPNAFISISYTENGENKVLEGQANEAGTYRIAIPNGFIKPYIKLTTTIKQDQKRITL
                     DDITVEDVTPPSGEAVTQIIQLGDPFPDVAELVTNIYDHSDNTSGAGVTTTLQSAPDT
                     NVFGPTEAIVRLEDKAQNYVDIRVPVFIKDDETEIQDGKALRAADFSVNVKDIIELND
                     AELEQFILSKSGAKAFNIETGEDLSAELKVASTNLKKETGTYAATIQIDGLTKEIAIQ
                     VTGELKFNHVPETISFETMELNQQKNIAKRNADFDLSVLDSRGSGGKFSVTATVKTPL
                     TSTINSAHTLPNGLIFIDNTGAKKILSAEPITIFESQSASEMIVPIEWAEDQGILVEV
                     DAAEAYVDESYETTIEWTLTDAP"
     gene            4421..5824
                     /locus_tag="U0280_001948"
     CDS             4421..5824
                     /locus_tag="U0280_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEM2271876.1"
                     /translation="MTSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNPAQFITGSP
                     SHQAFFASVAHFKQEIDKTAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAK
                     RDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFK
                     VTLKHENIRKESLFLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARD
                     FPELDKTSHLSRYLRTGEISIRTIWQTLQETEATEGRATFEKELCWRDFYNMIYVSFP
                     NQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITA
                     SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQ
                     KFDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRK
                     LAIARYEFSKEHSRGNI"
     gene            5962..6375
                     /locus_tag="U0280_001949"
     CDS             5962..6375
                     /locus_tag="U0280_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2177 family protein"
                     /protein_id="HEM2271877.1"
                     /translation="MAQFLKLFLTSAVVFLIFDLFWLLVASKKMYQQFIGDLMGDVKL
                     APAVIFYFIYVVGVTFFVLLPGTEKGSLGYTILAGALFGLVCYATYDLTNLATLKDWP
                     ITMTIIDLVWGTAVTTVTSVIVYFINLHFFSGAGS"
     gene            6378..8144
                     /locus_tag="U0280_001950"
     CDS             6378..8144
                     /locus_tag="U0280_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family EDD domain-containing protein"
                     /protein_id="HEM2271878.1"
                     /translation="MESESKRLLQSMLNGAAEVISKKDELNRINVFPVADGDTGSNLA
                     SLMQAIIDHVSPREYSTKELLEEVASAALIGARGNSGMIFAQYLNAVAESYHHLESTF
                     DGLVQAFQNAVHKAYEALLDPKEGTILSVMKAWSEELAGTYEQERSFQQSLLNAQIVA
                     EKALINTEFQMPILRKNRLVDSGAKGFYYFITGLTNAYCGKAVSDPVRFTEVEQTAEH
                     RHVETSEPKYRYCSEFIIKQATISHQHLQEILAAKGDSLVIAGNEKQIKIHIHTNEPK
                     EVLSLMAAYGVMTYQKVDDMRLQYEVTKKPRAKIAIVTDSIADLPEAFLLEHQVHVLP
                     MNILAGEENFLDKLTVGPNMMQEKLRKQTKMSTAQPTIRTVDALLSFLEHKYEHVLVI
                     SVAAKLSGTYQLIKQRIKARELSSDWIRVIDSKLNSVAQGILVKQAVELVESGKSWES
                     IYPEVEQMIERTFIYVAVADLSPMVQSGRIPRVLGKLAQKLSLYPIVSLDESGDGKLI
                     GVSFSQKQSMKKIIKKIAKLQLKELAITHVSSRDTAAIWQKQLEKETGEISYLVDSSA
                     AIAISAGLGSVAVAGIKKEETI"
     gene            8144..>8876
                     /locus_tag="U0280_001951"
     CDS             8144..>8876
                     /locus_tag="U0280_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HEM2271879.1"
                     /translation="MYWTVTLALLVYFILWFIISKIKGKYSLVDIAWGGGFVVVAWTG
                     FLTTFSMTAQSITILVLVTIWGVRLFWHLARRNWNKPEDYRYVNMRKRWGTTLVNLKA
                     FLNVFVLQGVLLFIIALPITHSFANETATFAWWQILGIVIWIIGFIFEVGGDLQLENF
                     KKNPANKGKLLTTGFWSVTRHPNYFGEALSWWGVFLVAYTQLNDLWLITSPIVITLLL
                     LFVSGVPLLEKKYQDRADFQAYANKT"
BASE COUNT         2967 a         1537 c         1957 g         2415 t
ORIGIN      
        1 aggaaagggg aaacaaaaat tgattatcaa aaaaacatta attgtaggat taattggcat
       61 aagttcagtc acactttttg caccggctgc ttttgcagta acttctgagg gagattcaaa
      121 agcaacagtt aaatttaaag ctgggacggg agtagttaac ccggttgacc cggaaaatcc
      181 aacgaaaccg attgacccgc tagatccaag taatccaact gatcctggaa ctggaaatac
      241 tggttcttta acattggatt atgtgtcatc tgttaatttt ggagaacatg aagtatcatc
      301 cacggaacaa agctactcct ccacatcaag aaaaccgttt atccaaatat ctgaccgtcg
      361 tggaactgga gctggttgga aagtgacagc aaccgcaacc gcttttcaaa atgaagacgg
      421 tgcagcttcc ctatcaggag cgacactatc atttaaaaac ggagaaacag catctgctag
      481 caacacagca acgacaccaa ctgctgctca aacagttgaa ttaccaacag atggaacttc
      541 gattgtgagt gttgtttcgg caaaagaatc ggaaggcatg ggaacatgga ttaatcgttg
      601 gtttggtgct acaccgaatg atacagctag tttaaacaac aatgttcaat taacgatacc
      661 agcaggaagc gcaacacttg gagaccatga agcgactatt acatggacat tatctgacgc
      721 gccaggagtt taaaaaattt gcgtttagaa ttcacttcta gacgcaaatt tttattaaaa
      781 acgatggaag gaaggtttaa ttgaagaaaa gttttcttag tttattgttc attattccgt
      841 tattagttac atgtagcaat tttgcagaag cacaggcggc agaaggagac gtcggttatt
      901 ccgttcaagc tcatatcccc gccaatcaaa tagataaaag acaaacttat tttgacctaa
      961 aaatgcagcc gaaacaaaaa caaacagtaa acattgatgt aatgaatagt tcaaatgaag
     1021 aaattcaagt ggaagcagca atcaactacg catccaccaa tcgaactggt gtcattgatt
     1081 acaccaaaaa tgatcttacg aaaaaagata aaagtttaga atatccactt ccagaactag
     1141 ctaaaattcc agacgaccaa aaactcctaa cgataccagt agatggcaaa aagaccgtcc
     1201 aagtgatgat tgaaatgcct gctgaatcga ttgatggcgt tgtattgggc gcagtagaat
     1261 ttaaaaagaa aaatactaac gagacgaaaa aaacaaaagg tgtctcctta aaaaatgaat
     1321 attcctatat tgtcggcatg caactagctg aaaccgacaa acaagtcaaa ccacatatga
     1381 atttactaag tatcaaaccg gcactcctta actatcacac agcgatagtt gccaaattac
     1441 agaacgacca accagtcata ctggaaaatc taagtattga tgcaaaagtc tatcaacaaa
     1501 attcggataa attactttac caaacaaaga aagcgaatat gaaaatggcg ccaaattcca
     1561 attttgattt tgggattgac ttggaaaatc aacctttaaa agaaggtaaa tacagattaa
     1621 aaatgactgc aacgaatggc gtggaaacct ggacttggga cgaagcgttc accattggta
     1681 aagaaggaca aaacttaaat aaagaagcag taaacctaga gaaaacgaac acatggcttt
     1741 acgttgcgat tgttgcaggt gtggttctta tagcactaat catcattttg gttataagaa
     1801 aacgaagaca aaaacaagaa aaataaagaa aggagctggc gaattggctt tcaaaaaatt
     1861 aatacttgta ttgaccattg cggctctttt tcttggtttt aaaatagtgg tagcagcgga
     1921 aaatgggagt agggacttag catcaaatga agcgatagtg actaatttta cagaattaaa
     1981 aacagctatt tccgaagata atggaataga tacagtgtat ttaggtgcag atgttgaatt
     2041 atcgggtgga attatcatcc cagcgacgaa aaagacattt actttatcag gaaaaaatcc
     2101 agcaacaggt gaaatacata ctttgacaga aacaatggca tcagctggtg cccagagcag
     2161 cgtgattaca gttaatacca acacaggtgc aaaagagaca actttaagag atattaatgt
     2221 tgtggggaaa aattattatg ggacgatttc ggtttatggg gctgcaaaaa acgtcgtaca
     2281 aaactatgaa aatgttcact atcaaggtcc gcaaatgata tataatttga atggaacggc
     2341 gaattttaaa ggaaccaatg atataacaat agcgtccgtt gtatctggtt ctgcggcacc
     2401 aaatgaagtc gcggaaatta aaggcgtgag cgtttccggt aagttgaata tcaatcacgc
     2461 aagttcgaat gcgaatagtg ctttttggtt cggtggtgga acggctgagg taaacacttt
     2521 tacagtggaa gaaaatgcag aggtgacgat actttctaat gggactggga tgttttatcg
     2581 ttcagggaca aaaccaattg atatagatgt gaaaaagaat gcgaagttag ctattacttc
     2641 taacaataat attttccgag acacgccggg cggagctgtt aaaatcgcgt caggtgcgga
     2701 tgtaactatg acaaaaactg ctggcgggaa tccacttcta tgggtggcag atgatattac
     2761 cgtaagtcct gatgcccgct ttatcttgaa taaaacaggc ggaactggct atattatcca
     2821 gttttataat gcgacggcga agttagatat aaatgatcct cggagctttt taattacgac
     2881 aaattcaaat acgccgatgt tttactggcc ttatgcgaac acctttaatt taaatgcgca
     2941 aatggtgaat tactgggata cggttggaac cattgatcga acggatttgg cagcgcaaag
     3001 ttttagttta ccaaatgggg aaaatgtgac ggggagtttg acgtacactg ggacaacgac
     3061 aaaaattctg tcaacgaatg cggggatgac gccgactaat tttaatcaaa acaccgcgcg
     3121 aatgattgca atggggcgac ttgaaggaac gataaatcct gtgacagacg cagataatga
     3181 aattacagga acagcgacac caaacgcttt tataagtatt tcatacacag aaaatgggga
     3241 aaataaggtt ttagaaggac aggcaaatga ggcgggaact tatcgaattg ctattccaaa
     3301 cggttttatc aagccttaca ttaaattgac tacaaccatt aaacaagacc aaaaaaggat
     3361 aacattagac gatataactg tagaagatgt gactccgcca agtggtgagg ctgttactca
     3421 aattatccaa cttggagatc cctttccaga tgtagccgaa ttagtaacaa atatttatga
     3481 tcattccgat aatacatctg gagcgggagt tacaactact ttacaaagcg cgcccgatac
     3541 taatgtattt ggacccacag aagccattgt tcgcttagaa gataaggcac aaaattacgt
     3601 ggatatccgt gtacccgttt ttattaaaga tgatgaaaca gagatacaag atggcaaagc
     3661 attacgagcg gcggactttt cggtaaatgt aaaagatatt atcgagctca atgatgccga
     3721 actggagcaa ttcattttaa gcaaatcggg tgcaaaagct ttcaatatcg aaactggtga
     3781 ggacttaagc gcggagttga aagtagctag caccaatttg aaaaaagaga caggcaccta
     3841 tgcggcaacg atacaaattg acggattaac gaaagagatt gcgattcagg ttacgggtga
     3901 gcttaaattt aatcatgtgc cagaaacgat ttccttcgaa acaatggagc ttaatcaaca
     3961 aaaaaatatc gcaaaacgaa acgctgactt tgatttatct gtgcttgatt caagaggctc
     4021 aggcggcaaa tttagcgtaa cagcaaccgt taaaacaccg ctgacatcca cgataaattc
     4081 ggcgcatact ttgccaaatg ggctcatttt tattgataat actggagcga aaaaaattct
     4141 ttccgctgaa ccaatcacca tttttgaatc gcagtcagct agtgagatga ttgttccgat
     4201 agaatgggca gaagaccaag ggattttggt agaagttgat gcagcggagg cttatgtgga
     4261 tgaaagctat gaaacaacaa tcgagtggac tttgacggat gctccgtaaa aacctgttag
     4321 caaaagttaa caggtttttt catgttataa gcccattgtt ttctaaatac actagtttct
     4381 cgtataatag cgttaagtaa tttgcgaaag gtggaagaaa atgacttcgg taatgtggtt
     4441 tcggagagat cttcgagtaa acgataataa agctctctat catgcttgta aagaggacga
     4501 tttgcttttg ttatttcaag taaatccagc acagttcatc acaggaagtc ctagccacca
     4561 agcttttttt gcaagtgtgg ctcattttaa gcaagaaatc gataaaactg cgcatttaca
     4621 aatcatgttt ggtgaaccga tagaatgctt ccaacaactt aaagattcgc taccaagctg
     4681 ggataaagtt tatttcaacc gtgatgaaac aggatacgga gcaaagcggg atgaggcggc
     4741 gcaagcgttc tttgacgaac aaaaaatcga ggttcaagcc ttccacgata gctatcttca
     4801 ttcagcggaa gaagtaaaga aatctccaac agaatactat aaaattttta ccccttatta
     4861 taaaaaatgg cgcgaagaaa taaaagaaac gccgttcaaa gtgactttaa agcatgagaa
     4921 tatccggaaa gaaagcttgt ttctgaaata tgaagaacaa tttgcggaaa tgactagcga
     4981 tttaccgata ttagatattg gtgaacgagc agcgaacacg agacttgcga attttattaa
     5041 acacgatgtt gctgactatg acaaagcgag agatttcccg gaactggata aaacaagcca
     5101 tttatcacgt tatttacgaa cgggggaaat ctcgattcgg acgatttggc agacacttca
     5161 agaaacagaa gcaacagaag gacgagctac atttgaaaaa gaactttgtt ggcgcgactt
     5221 ttataatatg atttacgttt cttttcctaa ccaaaaaaac gagccgatcc aagaaaatta
     5281 tcgttttatt gaatgggaaa ataaccgtga atatttcaaa gcgtggcaag aagggaagac
     5341 tggtttcccg ctcgttgatg cggcgatgcg ccagttgaaa gaaactggtt ggatgcataa
     5401 tcgactaaga atgattacgg cgtccttttt aacaaaagat ttgctgattg attggcgttt
     5461 tggcgaaaag tattttcaac aaatgctgat tgattatgat cctgcgagta atattggtgg
     5521 ctggcaatgg gcggcttcga ctggaacgga tgcggtgcca tactttagga ttttcaaccc
     5581 aacgacacaa tcacaaaaat ttgattcgac tgggaaattt attcgaaaat atgtaaaaga
     5641 gttagcgaat ctacctgata aatatattca tcaaccagaa aaaatgtcag aaactgagca
     5701 gaaagagcat ggcttgctgt taggaaaaga ctatccattt ccgatagttg accataaaga
     5761 acgacggaaa ttagccattg cacgctacga gtttagcaaa gagcattcta ggggaaatat
     5821 atagataatg agtcaatcat ttaattaaat gattgatttt tttgtggcag tattcacaaa
     5881 gaataagtct tgagcaacct tctaggagta agaacctggg tatgttaaaa ttcatttatc
     5941 aagtgataag ggggaatcac aatggcgcaa tttttaaagc tatttctaac gagtgcagta
     6001 gttttcttga tttttgatct tttttggtta ctcgtagctt ctaaaaaaat gtatcaacaa
     6061 tttattgggg atttaatggg ggatgtaaaa cttgctccag cagttatttt ttactttatt
     6121 tatgtcgttg gtgttacctt cttcgtttta cttcctggga cagaaaaagg aagtttaggt
     6181 tacaccattt tagcaggcgc gttgtttggt ctagtttgtt atgcgacgta tgatttgacg
     6241 aacttggcga cacttaaaga ttggccgatt acgatgacca ttattgatct cgtttgggga
     6301 acggctgtga caactgtgac ttcagtgatt gtttacttta ttaatctgca tttcttctcg
     6361 ggagcaggtt cctaatgatg gagtcagaaa gcaaacgtct attacaaagt atgctaaacg
     6421 gggcggctga agtaattagt aaaaaagacg agcttaatcg aataaatgtt tttcctgtag
     6481 cggatggcga cacgggtagt aatttagctt ctttaatgca agcgatcatt gatcatgttt
     6541 ccccgagaga atattcaacg aaggaattgc tagaggaagt agctagcgcg gcgctcatcg
     6601 gtgctcgtgg caattcaggg atgatttttg cgcaatactt aaatgctgtt gcggaaagtt
     6661 atcaccacct tgaatcgact tttgatggat tagttcaagc gtttcaaaat gcggtgcata
     6721 aagcttatga agccttgttg gatccaaaag aagggactat tttgtctgtg atgaaggctt
     6781 ggtcagagga gcttgctggg acgtatgagc aggagcgttc tttccagcaa tcgcttttaa
     6841 atgcacaaat agttgcggag aaagcattaa ttaataccga atttcaaatg ccaattttac
     6901 ggaaaaaccg gttggtggat tctggtgcga aagggtttta ttactttatc accgggctta
     6961 caaatgctta ttgtggtaag gcggtttctg accccgttcg ttttacggaa gtagagcaaa
     7021 cagcggaaca taggcatgtt gaaacaagcg agccgaaata tcgttattgc tcggaattta
     7081 ttatcaaaca agcgactatt tcacatcaac atttacagga aattctcgca gctaaagggg
     7141 attccttagt aattgcaggt aatgagaaac aaataaaaat ccatatccac acaaatgaac
     7201 caaaagaagt tttaagcctc atggcagcat acggcgtgat gacgtatcaa aaagtagatg
     7261 atatgcgtct gcaatatgaa gtcacaaaaa agcctcgcgc aaagattgct atagtgaccg
     7321 attcgatagc cgatttacca gaagcatttt tactggaaca ccaagtacat gtattaccga
     7381 tgaatatttt agctggagaa gagaattttc ttgataaatt gacggttggc ccaaacatga
     7441 tgcaagaaaa attaagaaaa caaacgaaaa tgagtacagc ccagccaaca atccgtacgg
     7501 tggatgcctt gttatctttt ttagaacaca aatatgaaca tgtgcttgtt atctccgttg
     7561 cggcgaaatt aagcggaact tatcaattaa tcaaacagcg gataaaagcg cgggagttgt
     7621 cctcggactg gatacgtgta attgattcta aattaaattc ggtcgcgcaa ggaattttag
     7681 tgaaacaagc agtagaacta gtggaatcag gtaaatcatg ggaatctatt tatcccgaag
     7741 tggaacaaat gattgagcgg acctttattt atgtggcggt tgcagatttg tcgccgatgg
     7801 tccagtctgg cagaattcca cgagtgttag gaaagcttgc gcagaaatta tcactctatc
     7861 cgattgtgag tttggacgag tccggggatg gcaaattgat aggcgtatcg tttagccaaa
     7921 agcaaagtat gaaaaaaatc attaaaaaaa tagcaaaatt acagctgaaa gagctggcga
     7981 ttacacatgt ttcttcaaga gacaccgcgg caatttggca gaagcaactt gaaaaagaaa
     8041 cgggggaaat cagctactta gtggatagtt cggcagccat tgcgattagt gctggactcg
     8101 gaagtgtcgc agttgcgggg attaaaaagg aggaaacgat atgatgtatt ggacagtaac
     8161 actcgcttta cttgtttact ttatactctg gtttattatt tcaaaaataa aaggaaaata
     8221 ttcgctcgtt gatattgcgt ggggcggcgg cttcgttgtt gtagcatgga ctggattttt
     8281 aacgacattt agcatgacag cgcaaagtat aaccatactt gttttagtga cgatttgggg
     8341 tgtccgtttg ttttggcatt tagcgcgccg gaattggaac aaaccagaag attatcgcta
     8401 cgttaatatg cgcaaacgct ggggaacgac attagttaat ttgaaagcct tcttaaatgt
     8461 cttcgtgttg caaggtgttt tattatttat tattgcttta ccgattacac atagttttgc
     8521 taatgaaaca gcgacattcg cttggtggca aatcctcggt attgttatct ggattattgg
     8581 ctttattttt gaagtcggtg gcgatttgca attagaaaac ttcaagaaaa atccagccaa
     8641 taaaggcaaa ttattaacaa ctggattttg gtcagtcaca cggcatccaa attattttgg
     8701 tgaagcactt agttggtggg gtgtattttt agttgcctat acgcaattaa atgatctctg
     8761 gctgattact agcccgattg ttatcacttt attattacta tttgtttccg gtgttccgtt
     8821 acttgaaaaa aaatatcaag acagagcgga ttttcaagca tatgcgaaca aaacgt
//
LOCUS       DASDXX010000111         8823 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.111, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000111 DASDXX010000000
VERSION     DASDXX010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8823
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.111"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..176)
                     /locus_tag="U0280_001952"
     CDS             complement(<1..176)
                     /locus_tag="U0280_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2584 family protein"
                     /protein_id="HEM2271880.1"
                     /translation="MGMPLEVNTMIVTKGKEKRISDNFFELEKLGYRIYPIDVPIAVR
                     KTKEGETLGEAIPR"
     gene            complement(227..700)
                     /gene="ytkD"
                     /locus_tag="U0280_001953"
     CDS             complement(227..700)
                     /gene="ytkD"
                     /locus_tag="U0280_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase YtkD"
                     /protein_id="HEM2271881.1"
                     /translation="MFIYNDTLGNKVTIYFEAQENNPDDVLIIPKTEDGWLFTEHKIR
                     GLEFPGGKGEPGETNLDAAKRELMEETGAISDELHFVADYLVESEERTFTKRVYAADV
                     ISIESLDDYLETKGPVIIQGELSRFILQPAFSFFMRDAGMVQIVQQAERILNDKN"
     gene            774..1040
                     /gene="yidD"
                     /locus_tag="U0280_001954"
     CDS             774..1040
                     /gene="yidD"
                     /locus_tag="U0280_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEM2271882.1"
                     /translation="MKKILIGGIRLYQKYISRFTPATCRFYPTCSAYGIEAIQTHGAL
                     KGSYLAIRRISKCHPFHKGGLDFVPPKKEKNADSEHSCKAHHHH"
     gene            1190..2143
                     /locus_tag="U0280_001955"
     CDS             1190..2143
                     /locus_tag="U0280_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM2271883.1"
                     /translation="MRKKYLIALTVLFSALLILTGCSDESDKKATKSDQLTVYTTVYP
                     LQYLTEQIGGEYVDVHSIYPPGSDAHSFEPTQKDMMKIADSDLFFYIGLGMEGFVDKA
                     EKTLANEHVSFVPTAEKLDLPKDPDAAEEHDHESEEEHEHGDINPHVWLNPVYMEQMA
                     TVVKDKLIKEMPDQKETFEKNYQAVEKKLKKLDQDFRTVTKEAKQKDFVTAHAAYSYW
                     ETEYGLHQIPIAGVSTSDEPSQKKLKSIVEKIEAEKIPYIMLEQNTNSKIADVIQQET
                     NTKTLTLHNLETLTQKDLDQKRDYLSIMNDNLKALKEGLNY"
     gene            complement(2161..3570)
                     /locus_tag="U0280_001956"
     CDS             complement(2161..3570)
                     /locus_tag="U0280_001956"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HEM2271884.1"
                     /translation="MDMTNWLQKRVRLSPKETALVFEGKEETFEEISEAVKQLAGKLF
                     ALGIRKDEMVALLGKNDRMTFLLIHALQQLGAVTLFLNNRLTKKEISFQLANAEVKHV
                     IVADSLVDKVATGISYATLAETDYEAPALLETWDLSRAASVMYTSGTTGKPKGVVQTY
                     ENHWWSAVASVLNLGLTEKDSWLCAVPIFHISGLSIMMRSVIYGIPVYLEEHFDEEKI
                     TQLLESGKISTISVVTSMLERLLKIHSGSYHPNVRTVLLGGGPASKAVLEICKQRDIP
                     LVQSFGMTETASQIVTLPPKDALNKIGSSGKALFPAEVKIADDGEILLKGPSITPGYL
                     HNKKATEASFVDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEY
                     EGVKEVAVIGKPDDKWGSVPVAFIVAEETFDEAELRLICETNLAGYKIPKQITIVEKL
                     PKTASGKIQRNKLKERHSM"
     gene            complement(3586..4404)
                     /gene="menB"
                     /locus_tag="U0280_001957"
     CDS             complement(3586..4404)
                     /gene="menB"
                     /locus_tag="U0280_001957"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HEM2271885.1"
                     /translation="MSFNWQTEKVYEEIKYESYEGIAKITINRPEVHNAFTPKTVTEM
                     IDAFNLARDNSNLGVIILTGEGEKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLI
                     RVIPKPVIAMVAGWSIGGGNVLQLVCDLTIAADNAKFGQTGPNVGSFDAGYGSGYLAR
                     VIGHKKAKEVWFMCRQYTADEALEMGWINTVVPVADLEKETVAWAKEMLQKSPTALRF
                     IKAAFNADTDGLAGIQQLAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP"
     gene            complement(4401..5228)
                     /gene="menH"
                     /locus_tag="U0280_001958"
     CDS             complement(4401..5228)
                     /gene="menH"
                     /locus_tag="U0280_001958"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HEM2271886.1"
                     /translation="MLVNGRHYHLTTAISGEKPALLMLHGFTGTSETFQDSISGLKEH
                     FNIIAPDLLGHGNTASPEEISPYTMENICEDLAGILHQLNISRCFVLGYSMGGRVATA
                     FAATFPKRVRGLILVSSSPGLEQADIRESRVAADNRLADWIEEEGLVPFVDYWENLAL
                     FASQKVLSPEMKRRIRSERLSQNSHGLAMSLRGMGTGKQPSYWNCLANFTFPVLLITG
                     ALDEKFEKIAQEMHQLLPNSTHVSIQEAGHAVYLEQPNSFSSQLNYWLEDILKEEEK"
     gene            complement(5230..6972)
                     /gene="menD"
                     /locus_tag="U0280_001959"
     CDS             complement(5230..6972)
                     /gene="menD"
                     /locus_tag="U0280_001959"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HEM2271887.1"
                     /translation="MTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAE
                     HPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLI
                     VLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDI
                     AMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTE
                     CTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAF
                     LKEAEIMDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDM
                     IHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAE
                     LRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASVVF
                     QPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF
                     GTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQ
                     ALWVKIADALKALD"
     gene            complement(6969..8357)
                     /locus_tag="U0280_001960"
     CDS             complement(6969..8357)
                     /locus_tag="U0280_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HEM2271888.1"
                     /translation="MNTKLPLDLFNQAKRSASQDQPALFSWVTELDELVSPVKLFKKA
                     GTAFKGERFFWQNPEMTLTMTGFGVTKQFLAEKKKDAFLGLQEKIEKRLRTSVTNATV
                     DATGPIYFGGFAFDPERDTEKEWQSFKDGLFYLPLFMLTNKDGKSYLTVNLSIYSDDT
                     ESKLEAVFNQWQKIIHQEVNEAEMALLTDFKEIGKDHFLETASEIIDMINHSEDVKKV
                     VLARRMGLRFQRQVDSAIILENMLATQENSYFFLIEKGTGVFFGATPERLLAVNGDEI
                     HSSCVAGSTERGATEEADEALGNALLKDAKNLREHSYVVQMMEETLKPFTTGLSLSSQ
                     PVLLKNRDIQHLYMNITAKKKPDVSMLEMVKALHPTPALGGLPQKMGLAIIRMKEEMD
                     RGFYGAPIGWVDLKGSGEFAVAIRSGLIVDSQGLIYAGCGIVGDSVPKEELQETAVKF
                     QPMLRVLGGIKK"
     gene            8532..>8823
                     /locus_tag="U0280_001961"
     CDS             8532..>8823
                     /locus_tag="U0280_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465202.1"
                     /note="catalyzes the formation of dimethylmenaquinone from
                     1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM2271889.1"
                     /translation="MANASKSALTKQTGFQKWWTLLRPHTLVASFVPVFLGTSVAMSY
                     TSFHFTRFIVMLIACFFIQTSANLFNEYFDYKKGQDDEHSVGNGGAIVRNGMR"
BASE COUNT         2645 a         1961 c         1491 g         2726 t
ORIGIN      
        1 tttcgaggga ttgcttctcc aagtgtttcg ccttcttttg ttttacgtac tgcgattggc
       61 acatcaattg gataaatccg ataacctaat ttttctagtt caaagaaatt atcagaaatt
      121 cgcttttctt ttccttttgt tacaatcatt gtgtttacct ctagtggcat acccaatttt
      181 cccacctcca gtttctttaa tcatagcaga gattgcccct atttgactag tttttatcat
      241 ttaagattcg ctcagcttgt tgcacaattt ggaccattcc cgcatctcgc ataaaaaagc
      301 taaaagccgg ttgtaaaatg aatcgactta actccccttg aatgatgaca gggccttttg
      361 tttcaaggta atcatctagt gattcaatgg aaataacatc cgccgcataa actcgtttag
      421 taaacgttcg ttcctctgat tcgaccaaat aatcagctac aaaatgaagt tcatcactaa
      481 ttgcgcccgt ctcttccatg agctcgcgtt tcgctgcgtc taaatttgtt tctcctggtt
      541 caccttttcc accagggaat tcaagcccac gaattttgtg ttcggtaaaa agccaaccgt
      601 cctctgtttt aggtataatg agcacatcgt ctggattatt ttcctgtgct tcaaaataga
      661 ttgtaacttt gtttccaagt gtatcattat aaataaacaa aaactcactt ccttttcttt
      721 tttcaaaaat gtggtaagct gtatgtaagc tgaaatttag agggtgaaaa tcaatgaaaa
      781 aaattcttat cggaggaatc cgactttatc aaaaatatat ttcgcgtttc actccggcta
      841 cttgtcgttt ttatccaact tgttctgcct atggaatcga agcgatacag acacatggcg
      901 ctttaaaagg tagttacctt gcgattagac gtatttctaa atgccacccg tttcataaag
      961 gcggactaga ttttgtgcca cccaaaaaag agaagaatgc tgattccgag cattcctgta
     1021 aagctcacca tcaccattaa tcatatcatg aatcggtttt tgccggttca tttttttctt
     1081 gctttttaag acagaataag gtattatcaa attcggacta taaatcgtaa ttgctacgat
     1141 tcgtatatta tttaaacaag aattatttcg atttagagga gtgaaaagat tgagaaaaaa
     1201 gtatcttatt gccttaactg tactattttc agcattactc atacttactg gctgctcaga
     1261 tgagagcgat aaaaaagcga caaagagtga tcaattaaca gtttatacaa ccgtttaccc
     1321 tttgcagtat ttaacagaac aaatcggcgg tgagtatgta gatgttcata gcatttaccc
     1381 accaggttct gacgcccata gcttcgaacc cacccaaaaa gatatgatga aaattgccga
     1441 tagtgattta ttcttctata tcggactggg tatggaagga tttgtggaca aagcggaaaa
     1501 aacactcgcg aatgaacatg tctctttcgt ccctaccgct gaaaaattag acttgccaaa
     1561 agatccagat gccgcagaag aacatgacca cgaaagcgaa gaagaacacg aacatggcga
     1621 cattaacccg cacgtatggt taaatcctgt atacatggaa caaatggcaa cagttgtaaa
     1681 agataaatta atcaaagaaa tgcccgatca aaaagaaact ttcgaaaaaa attaccaggc
     1741 tgtcgaaaaa aaattgaaaa agctagatca agatttccgc acagttacaa aggaagcaaa
     1801 acaaaaagac ttcgtgacag cacatgcagc ctatagctac tgggaaacag aatatggtct
     1861 gcaccaaatt cctattgccg gtgtatcaac aagtgatgaa ccttctcaaa agaaattaaa
     1921 atctatcgtt gaaaaaatcg aagcagagaa aatcccatat attatgttag aacaaaacac
     1981 taactcaaaa atagcagatg ttattcaaca agaaacaaat acaaaaacac tgacactcca
     2041 caatttagaa acacttacgc aaaaagactt agatcaaaaa cgtgattatc tttccattat
     2101 gaacgataat ttaaaagcat taaaagaagg tcttaattat taaaaagaaa ggcgctctgt
     2161 ttacatagag tgcctttctt ttaatttatt gcgttgaatt tttccagatg ctgttttagg
     2221 tagcttttcg acaatcgtta tttgtttagg gattttataa ccagccaaat ttgtttcaca
     2281 gataagccgt aattcagctt catcaaatgt ttcttctgca acgataaaag cgacgggaac
     2341 actaccccat ttatcgtcag gcttaccgat aacagccact tctttcacgc cctcatactc
     2401 ggaaatgaca tgttctattt cagtaggata aatgttctct cctcccgaaa taatcaaatc
     2461 agaacgacgc tctaacacaa ataaaaagcc ttcttcatcc aaatagccaa tatcaccagt
     2521 tttgaaccaa ccatccacaa acgaagcttc tgtcgctttt ttattatgta aatatccagg
     2581 tgtaatcgat ggtcctttta gtaaaatttc tccgtcatcc gcaattttca cttctgctgg
     2641 aaataacgct ttacctgaag aaccaatttt atttaaggca tcttttggtg gtaaagtaac
     2701 gatttgtgaa gctgtttctg tcatcccgaa tgactgcact aagggaatat cacgctgttt
     2761 gcaaatttcc aaaacagctt tactagcagg cccgccgccc agtaaaacgg ttcgaacatt
     2821 gggatgataa cttccgctgt gtattttcaa caagcgttcc agcatagaag tcacgaccga
     2881 aatcgtagaa attttaccac tttcaagcaa ttgcgtaatt ttttcttcat cgaaatgctc
     2941 ttccaaatat acgggaattc cgtaaataac cgaacgcatc ataatcgata aaccactaat
     3001 atgaaaaatc ggcacagcac agagccagct atctttctcg gttaaaccta aattcagcac
     3061 cgaagcaaca gcactccacc agtgattttc gtaagtttgc acaacacctt ttggtttccc
     3121 tgttgtccct gatgtataca taacagaagc cgcgcgagat aagtcccatg tttctaacaa
     3181 cgctggcgct tcataatccg tttctgccaa agtagcataa ctaattccag tggctacctt
     3241 atctactaac gaatccgcta caatcacatg ttttacctca gcgttcgcga gttgaaacga
     3301 tatctctttt ttcgtcaaac gattattcag aaataaagtg accgcaccaa gttgttgcag
     3361 agcatgaatg agtaaaaaag tcatccgatc atttttccct agcaaagcaa ccatctcgtc
     3421 ttttctaatc cctaacgcga ataacttacc cgcaagttgt tttactgctt cacttatttc
     3481 ttcaaatgtt tcttcttttc cttcaaaaac gagtgcggtc tctttaggag aaagccgcac
     3541 tcgtttttga agccagtttg tcatgtccat ttttacacct tcaaatcaag ggaattttgg
     3601 aaattggtca aagtctggat cacgtttttc tttaaaggca tcgcgacctt ctttggcttc
     3661 atcggttgtg taatatagaa gtgttgcgtc accagctaat tgctgaatac ccgctaaacc
     3721 atctgtatct gcattgaaag ctgctttgat gaaacgcaag gcagttggac ttttttgtag
     3781 catttctttt gcccaagcta ctgtttcttt ttctaaatct gctactggaa caacagtgtt
     3841 aatccagccc atttctagcg cttcgtccgc tgtatattga cggcacataa accaaacttc
     3901 tttcgctttc ttatgtccaa taacacgtgc taaatagcca gaaccataac cagcatcaaa
     3961 gctaccaaca ttcggtcctg tttgaccaaa ttttgcatta tctgctgcaa ttgttaagtc
     4021 acataccaat tgaagaacat tacctccacc aatggaccag cccgcaacca tcgcaataac
     4081 tggctttgga ataacacgaa ttaaacgttg taaatcaaga acattcaaac gtgggatttg
     4141 gtcatcgcca acatacccac catgaccgcg aactttttgg tctccgccag aacagaaagc
     4201 tttttcgcct tcccctgtta aaataatcac gccaagattc gaattatcac gcgctaagtt
     4261 aaatgcatca atcatctctg ttactgtttt tggtgtaaat gcattatgta cttctggacg
     4321 attaatcgta attttcgcga ttccttcgta actttcatat ttgatttcct catatacttt
     4381 ttctgtttgc caattaaaac tcatttttct tcctccttca aaatatcttc cagccagtaa
     4441 ttaagctgac ttgaaaagct gtttggttgt tctaaataaa ctgcatgccc cgcttcttga
     4501 attgaaacat gcgtactatt tggtaaaagt tgatgcattt cctgcgcgat tttttcaaac
     4561 ttctcatcta aagcaccggt aatgagtagc actggaaaag taaagttcgc taaacagttc
     4621 cagtaagatg gttgttttcc ggtccccatc ccacgtagac tcattgctaa accatgcgag
     4681 ttttgcgata gccgttctga cctaattctt cttttcattt caggagacaa aactttttgt
     4741 gaagcaaaca aagctaaatt ttcccagtag tccacaaaag gcaccaagcc ctcttcttca
     4801 atccagtctg ccaaacgatt atcagccgca acacggcttt ctcggatatc tgcttgttca
     4861 aggccaggag agctactaac taaaataagt ccacgcaccc tttttggaaa ggttgctgca
     4921 aacgcagtcg cgacccgccc gcccatcgaa tagccaagta caaaacatct actgatattt
     4981 aattgatgta aaattccagc taaatcctcg caaatatttt ccatagtgta aggcgatatt
     5041 tcttctgggc ttgcggtatt tccgtgccca agtaaatctg gcgcaataat attaaaatgt
     5101 tctttcaaac ctgaaatact atcttgaaat gtttcgcttg ttccagtaaa accatgtaac
     5161 atcagtaaag ctggcttttc tccacttata gcagttgtca gatgataatg tcgaccgttt
     5221 actagcatat taatctaatg cctttaacgc gtccgcaatt ttaacccaaa gtgcttgatg
     5281 atttgcttta ttttcatgac gatttgtttt cacttcaata atatccaaac ctttatggta
     5341 gctagcttta tcgattgctt cttctagttc atctaccgac ttagcctcgt gataatctgc
     5401 atcataaaaa gcagctgcaa aacggaaatc aagttcagta gatgtaccaa ataatgattc
     5461 aaaatacttc ggctcgtttg cttgaggtaa gaacgagaat atcccgccgc catcattatt
     5521 aacaatcaca atcgttaggt tcatcttata ttttttcgcc ataagtaacc cgttcatatc
     5581 atgataaaag gataaatcac caattagtaa aaacattggt tggaagacaa cactagcacc
     5641 taacgccgaa gaaacaactc cgtcaatacc attagccccg cgatttgcta gcatttttat
     5701 tttcttatca atttgtgaaa agtacgtgtc aacatcgcga atcggcatac tattaccaat
     5761 aaagagtccc gctttgtccg gtaacaaacg gcgtaattcc gcaactatct taccttcttc
     5821 caaaatggtt gtgttcgcca tttcagccaa aacgatttct cgtgccactt tattatacga
     5881 tgtccatcca tttaaccacg ctgcatcttt cgcatcatca ggcatatttt gttgcatgat
     5941 atctagtaaa aatcgttcat cacagtgaat catgtctgtt accgctttaa tcggatcttt
     6001 ccaagcagca cccggatcca ccacataaaa acgaatatct gaaagttgtt ctaaccagtt
     6061 tttcagtggt ttagaaactg gcatacttcc aaaacgaata actacttctg gtgttaattt
     6121 atccataatc tctgcttctt ttaagaatgc atcatattgg tcaatcacta cttcatctag
     6181 cgccccgtaa gaacggagtc cagaaagcgg atcagctaaa atcggccaac ctagtttttt
     6241 cgctaaatca accattggct gctccaattc tttcttatcg attggaccaa cgacgaatac
     6301 gcctttttta ccagtgcatt ctgtcaccat tttttgaatc gagctatcgt ccaatacttc
     6361 atgcgtataa taaatatgta cgtgatgatg tttttttccg gtagctgtga acggtgaagg
     6421 ttctagaatt ggcacaagcg gttcgcgtaa tgggaaattg aggtgcacag ggccacgtgg
     6481 agttttcatt gcaatatcca ccgcgcgact tccatgccat tttgcatagc gaagcatttc
     6541 ttcactgttt tcaggaagtg ccatatccgt aaaatccttg acatgtgaac catataaatg
     6601 caactgatcc atcgcttgtg gtgctccaac atttcgaagc tcatgtggac gatcagcagt
     6661 taaaacaatc aatgggattt gtgataaatt agcttcagca actgctggaa aatagtttgc
     6721 agctgccgtt cctgaagtac aaagtaaaac aactggacgt ttcgatgcct ttgctagacc
     6781 taaagcaaaa aagccagccg agcgttcgtc aacatccaca taaatcttca aaatcggatg
     6841 ctctgccatc atcagtgcaa gcggagtgga acgtgaaccc gggctaataa ttgcttcttt
     6901 cacaccggct tgcacaagct cctcaataaa tgcagctaaa taatctgtca gcacttgttc
     6961 gtggtttgtc atttctttat gcctcctaat acgcgtaaca tcggctggaa ttttactgcc
     7021 gtttcttgta attcttcttt tggtacagaa tctccaacaa tcccgcaacc agcatagatt
     7081 aacccctgcg aatcgacaat taagcctgaa cgaatggcca cagcaaactc accagaacct
     7141 tttaagtcaa cccagccaat cggtgctccg tagaaaccac gatccatttc ttctttcatc
     7201 cgaataatgg ctaatcccat tttttgaggt aaaccgccaa gagctggcgt tggatgaaga
     7261 gcttttacca tttcaagcat ggaaacatct ggttttttct tcgcggtaat attcatatat
     7321 agatgttgaa tatcacgatt tttcagaagt actggttggc tagataacga caatcctgtt
     7381 gtaaatggtt ttaatgtttc ttccatcatt tgcactacat aagaatgctc tcgcaagttt
     7441 ttcgcatctt ttaacagcgc atttccaagt gcttcgtccg cttcttcggt agcgccgcgc
     7501 tccgtagaac cagctacaca tgacgaatga atttcatccc cattgaccgc aagtaatctt
     7561 tcaggagttg ccccgaaaaa gacccctgtt cccttttcaa taaggaagaa ataactattt
     7621 tcttgtgttg ctagcatatt ttccaaaata atggcactat ctacttggcg ctggaaacgc
     7681 aagcccattc gtctagctag aaccactttt tttacatctt ctgaatgatt aatcatatcg
     7741 ataatttcac tcgcagtttc taggaaatgg tctttgccaa tctccttaaa atctgtaagt
     7801 aatgccattt cagcttcatt aacctcttga tgaatgattt tttgccattg attaaaaaca
     7861 gcttctaatt tgctttccgt atcatcagag tagatagaca aattaacggt taagtaactt
     7921 ttaccatctt tattcgttaa cataaatagt ggtaaataaa acaagccatc tttaaaactt
     7981 tgccattctt tctctgtatc acgctcagga tcaaaggcaa aaccaccaaa gtaaattggt
     8041 ccagtagcat ctacggttgc attggttaca ctagttcgca gtctcttctc aattttctct
     8101 tgcagtccaa gaaaagcatc ttttttcttc tccgccaaaa attgtttcgt tacaccaaaa
     8161 ccggtcatgg tcagtgtcat ttctggattt tgccagaaaa aacgctcacc tttaaaagcc
     8221 gtgccagctt ttttaaacaa tttgactgga gacactaatt catctaactc agttacccag
     8281 ctaaatagag ccggttgatc ttggcttgcg ctacgtttcg cttgattaaa taaatcaaga
     8341 ggcaatttag tattcatatg cttatctctc cttttacatt cacatcttct attataccaa
     8401 aaatagagct aaactgcttg gtttgcgttt tttctttcat ttcgttatta attattgacg
     8461 ttcttgcaat atttccctaa aatgaagggt agacatctga aacatatgga agtgaaaaag
     8521 gagagaaaaa catggctaat gcctcaaaat ctgcacttac aaaacaaact ggatttcaaa
     8581 aatggtggac attacttcgc ccccatacac ttgtagcctc tttcgttcca gtatttcttg
     8641 gaacatcagt cgcaatgagc tacaccagtt ttcattttac acgttttatc gttatgctaa
     8701 ttgcttgttt ctttatacaa acatccgcca atctattcaa tgaatatttt gattataaaa
     8761 aagggcaaga tgatgagcac tcggtaggaa atggtggtgc tatcgtccga aatggtatgc
     8821 gcc
//
LOCUS       DASDXX010000112         8719 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.112, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000112 DASDXX010000000
VERSION     DASDXX010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8719
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.112"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..106)
                     /locus_tag="U0280_001962"
     CDS             complement(<1..106)
                     /locus_tag="U0280_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-O-methyl transferase"
                     /protein_id="HEM2271890.1"
                     /translation="MKRYIINRGIMVAVVIIYMYPLLGIIKGEKIFGDI"
     gene            complement(108..311)
                     /locus_tag="U0280_001963"
     CDS             complement(108..311)
                     /locus_tag="U0280_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2271891.1"
                     /translation="MKVRNKVKQLREERGIGQNELALALEVSRQTIHAIEKGKYNPSL
                     ELSLKMARYFRLTIEEIFQLEEN"
     gene            complement(438..1838)
                     /gene="pdgA"
                     /locus_tag="U0280_001964"
     CDS             complement(438..1838)
                     /gene="pdgA"
                     /locus_tag="U0280_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan N-acetylglucosamine deacetylase
                     PdgA"
                     /protein_id="HEM2271892.1"
                     /translation="MKIRWIRLSLVTVLIIAVVFVGVIGFQKYQFSKSRNKVIMQMDR
                     LMKDQDGGNFRRLDKKENGVEIISYIPKTTEKKDNEIIQKEIEKATDAEVKKLNRDKE
                     TQGIIFYTYQKHRMAEQAISYKAVQSEYVKEGRTKFVLKDKKDICKNIVTDAETGALL
                     TLGEVLIKSNQTKLNLKTAVEEELIKTGGFSLKDVGNLGEIKSLVKWNQTDFEITNSE
                     LILPVKIPGAPEPNKVKVKLADIASSVNKRYLPSSVKVPEVPKAKTNKRIALTFDDGP
                     SASVTPGVLDTLKRHNVKATFFVLGSSVIQNPGLVKRELEEGHQVGSHSWDHPQLTKQ
                     STQEVYNQILKTQKAVFDQTGYFPTTMRPPYGAVNKQVAEEIGLPIIQWSVDTEDWKN
                     KNAGIVTKKVLAGATDGAIVLMHDIHKTTAASLDATLTKLKNQGYEFVTIDELYGEKL
                     QIGKQYFDKTDSRMVK"
     gene            complement(2131..2940)
                     /locus_tag="U0280_001965"
     CDS             complement(2131..2940)
                     /locus_tag="U0280_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEM2271893.1"
                     /translation="MLNYLSSLNPVLLALLAGIFTWACTAAGASLVFFFKNLNKKWGN
                     VMLGFAAGVMLAASFWSLLAPAIEMSKDLGKFSFVPALVGFLLGGIFLRVIDRIIPHL
                     HFGFPEQAKEGPKTSLRKSILLVLSITIHNIPEGAAVGVAFGAVITGDTETLITAIVL
                     ALGIGIQNFPEGAAVSIPLRGEGLSRGKSFWYGQLSAVVEPIFAVIGAVLVVFVTPIL
                     PFALAFAAGAMIFVIVEELIPESQVEGSTDLATAATMAGFAVMMVLDVALG"
     gene            complement(2967..3158)
                     /locus_tag="U0280_001966"
     CDS             complement(2967..3158)
                     /locus_tag="U0280_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271894.1"
                     /translation="MAKPIEEIGEEIGAKVEKVARKTGNVAGTAAKLSVYSSIWAVKT
                     GVNKTRAFAQGFKQGWSGK"
     gene            3501..4373
                     /locus_tag="U0280_001967"
     CDS             3501..4373
                     /locus_tag="U0280_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HEM2271895.1"
                     /translation="MTGLGTLLFLVGIGVLIFGLVSFRRKNWPRKKTQIIIISSILAI
                     IIGVGIIPTTDEEASTEEPTKQEEKTEKVDNTPILKAETTFTTDDEGTLVVEGKTNPG
                     AEVTLDFVAIPDAVTTADENGAFSLSVNQLDKAQDAVLSIVIDGQTKEQTLKLALTPA
                     YETKLTAKAEAERVAAEKAEAERVERERVAAEEKRAADAKIAAEKKAEEARVAAEKKA
                     AEEKRVAAERSKAAAAQPDTSNEQGQMVYITATGKRYHYDQNCRGLNNSNGETAVTVA
                     QAKAQGLTLCKFEQ"
     gene            4573..7176
                     /gene="ppsA"
                     /locus_tag="U0280_001968"
     CDS             4573..7176
                     /gene="ppsA"
                     /locus_tag="U0280_001968"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HEM2271896.1"
                     /translation="MKPYVLKFQEIRPHSEALVGGKGMNLGACSYIEGVHVPAGFCLT
                     TEAYKRTLAENNEFTQLLQRLSSLKTSDMDAIREISETIRTLIQHTQIPSEIASYMDA
                     TLLDVGGYEMPFAVRSSATAEDLPHASFAGQHDTYLNIIGKDALLQHISMCWASLFTE
                     RAIIYRIQNQFDHRKVQLAVVIQQMISPEASGILFTADPITSNRKSLSIDASFGLGEA
                     LVSGLVSADSYTVRENTITNKIIATKKLAIYSLKEGGTETRILEKSQQTKQTLTDQQI
                     IQLAKLGRKIEAYFGKPQDIEWCLAEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVA
                     HQQMMTDAMKPLGLSFYLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMVNSLGQSDP
                     LIKDALLTVINKKGFLPPLPTEENPSQAPVSGKPPVRSIPDSSSVFELVRNSENSIKH
                     LKQSIETKNGSDLFDFIVEDLEELKRVLFNPTSIDAIMAGMDASAWLNEHIYQWLGEK
                     NVADKLSESAPNNITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGA
                     ETKKALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASMHKFAQG
                     EKEAFHKEQEILRRLQELPDGEQKAMETKEKIDILRHFIGYREYPKYGMINRYFIYKL
                     ALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINARKRDFATFEKLTP
                     PRILTSDGEMINGEYKRENLPKDAILGLPVSSGTVEGRARVILEMEKADLEDGDILVT
                     AYTDPSWTPAFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVENATTIIKDGQQIRI
                     NGTEGYIEILD"
     gene            complement(7224..>8719)
                     /locus_tag="U0280_001969"
     CDS             complement(7224..>8719)
                     /locus_tag="U0280_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2271897.1"
                     /translation="LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS
                     ADFANQVIKKPARNFSKTLSVPNNITSIDGTLVTPKTISNNGTYDAPNVNWSSPSYLP
                     EVRYTFKQDVAVGSTTSSYTGIIIQPLNEPVDYNVTFNIDGNTSEVKTVTEEDLIPEP
                     TNPTKQGYTFDGWYDAETGGTKWDFTTGQMPANDLMLYAHFSVNSYQVNFDIDGAVMN
                     EAVVYDTLLNEPTAPTKQGYTFDGWYDAETGGNKWDFKTMKMPANDVTLYAHFTVSSY
                     QVNFDIDGAVTNEAIVYDALLNEPATPTKQGYTFDGWYDAETGGNKWDFKTMKMPAND
                     VTLYAHFTINNYQANFDIDGAVTNETITYDTLLNEPTAPTKQGFLFDGWYDAEVGGTK
                     WDFNTMKMPANDINLYAHFSKETPLIPSPSDESDSKPTNGSITINEPSATSMPAQNNN
                     ITVTAGENTPELTTAKLPKTGDNNPWQTLFAGILLSSSAFYIWRKKA"
BASE COUNT         2631 a         1788 c         1578 g         2722 t
ORIGIN      
        1 cgatatctcc aaatattttt tcccctttaa ttattcctaa aagtggatac atatatataa
       61 taactaccgc aaccataata cctcgattaa taatgtatcg tttcatgcta attctcctcc
      121 agttgaaaaa tctcttctat tgttaaacga aaatagcgtg ccatcttcaa acttagctct
      181 aaactaggat tatatttacc tttttcaata gcatggattg tttgtcttga aacttctaat
      241 gctaaagcta attcattttg tccgattcct ctttcttccc gcagctgttt cactttatta
      301 cggactttca attaaccacc accaaataag aagtatttac agttattata aaataaatac
      361 agcttcacgt aaagaaaact ttacatttcg tataaaaaaa gtagctaaaa tgattcattc
      421 atcttagcta ctgattttta tttcaccatt cttgaatctg ttttatcgaa atattgcttc
      481 ccaatttgca atttctcgcc ataaagttca tcaatagtaa caaactcata tccttgattc
      541 tttaatttag tcaatgtagc gtcaaggctc gcagcagtgg ttttatgaat atcatgcatt
      601 agtacaatcg ctccgtccgt tgcaccagca aggacttttt tcgttactat accagcattt
      661 ttgtttttcc aatcttctgt atcaacagac cactgaatta ttggaagacc aatctcttca
      721 gccacctgtt tgtttactgc accatatgga gggcgcattg tagttggaaa atatccagtt
      781 tgatcaaata ctgctttttg cgtttttaaa atttggttgt acacttcttg tgtcgattgt
      841 ttagttaatt gcgggtgatc ccatgagtgg ctgccaactt ggtgcccttc ctctaattca
      901 cgttttacta aacccggatt ttgtatgaca ctagagccaa gtacaaagaa tgtcgctttt
      961 acattgtggc gtttcaatgt atcaagtacg cctggtgtta ccgaggcact tggaccatca
     1021 tcaaaagtaa gcgcaattcg cttgttggtt tttgcttttg gcacttctgg aactttcaca
     1081 ctgcttggta agtagcgttt attcacagaa ctagcaatat cagcaagttt tacttttact
     1141 ttattcggtt ccggtgcacc tggtattttt actggcaaaa ttagttcaga gttcgtaatt
     1201 tcgaaatctg tttgattcca tttcactaaa ctcttaattt ccccaagatt cccaacatct
     1261 tttaaagaaa aaccccctgt tttaatcagt tcttcttcaa cagctgtttt taaatttaat
     1321 ttagtttgat tactttttat taatacttcc ccaagtgtta acaaagcacc tgtttctgcg
     1381 tcggttacta tgtttttgca aatatctttt ttatctttga gtacaaattt agttctacct
     1441 tcttttacgt actctgattg aacagcttta taagatattg cttgctcggc cattctatgc
     1501 ttttggtaag tgtaaaaaat aatcccttga gtttctttat ctctatttaa ctttttaacc
     1561 tctgcatctg tggccttttc aatttctttt tggataattt cgttgtcttt tttctcagtt
     1621 gttttaggaa tgtaagaaat gatttccact ccattttctt tcttatccaa gcggcggaaa
     1681 tttcctccat cttggtcttt cattagtctg tccatctgca ttattacttt gttgcgcgac
     1741 tttgaaaatt ggtatttttg gaaacctatt acaccaacaa aaaccacggc aataatgaga
     1801 acggtaacta gtgaaagtct aatccaccta attttcacat tatgcacctc accttagaaa
     1861 aaccttcccc agcttttctt ataaaacaat tatacatgaa aaaaagcaac tttctagctt
     1921 ttgtactaaa ataggaaaaa aggaccaaca attctataac aattgtcaaa aaaaagacac
     1981 ggataaagtg ggagctttta ccgtgtccga tttatagtta caggattacc cctgaaaact
     2041 aacatattgt gaagtatttc actattaatt ttaccgtaaa aaaacgcatt ccgcaaatat
     2101 taaatgtcgt tttttgtcca gtttattatt ttatcctaac gcaacatcta aaaccatcat
     2161 tactgcaaat cccgccatcg ttgcagcagt tgctaaatcg gtcgaacctt ctacttgaga
     2221 ttcaggaatt aattcctcta caataacaaa aatcattgca cctgctgcaa aggccagcgc
     2281 aaacggcaaa ataggtgtaa caaaaacaac caatacagca ccaattacag cgaaaattgg
     2341 ttcaactacc gctgaaagtt ggccatacca gaaacttttc cctctcgaga gcccttctcc
     2401 gcgcaaagga atggatactg ccgctccctc tggaaagttt tgaataccaa taccaagcgc
     2461 caaaactatt gcagtaataa gcgtctccgt gtctccagtt atcactgctc cgaaagctac
     2521 cccaacagct gccccttctg gaatattatg aatagtaatg gaaagaacca gtaagatact
     2581 ttttcgaaga gaagtttttg gtccttcctt cgcttgctct ggaaacccga aatgtaaatg
     2641 tggaataata cggtcaataa cacgtaaaaa tattccccca agcaaaaagc caactagagc
     2701 tggtacgaag gaaaacttcc ctaaatcttt actcatttcg attgcagggg caagaagcga
     2761 ccagaagctt gctgcgagca taacgcctgc agcaaatcct agcataacat tgccccattt
     2821 tttatttaga tttttaaaga aaaatacgag tgaagctcct gctgcggtac aagcccatgt
     2881 aaaaataccg gcaagaagtg ctaacagtac cggatttagt gacgataagt aatttaacaa
     2941 ttcatgctct cccttttcct atgcttttat ttaccagacc agccttgttt aaagccttga
     3001 gcaaatgcac gagtcttatt tacgcctgtt ttcacagccc aaatggaact ataaacagat
     3061 agtttagctg ccgttccagc aacatttcca gttttccgtg caactttctc tacctttgct
     3121 ccgatttctt caccaatttc ttctatcggt ttcgccattt ctagcacctc caaagcactt
     3181 gtctttcctt catcataaag caatcaatcg gattattcaa gctgcttcct ctttatcctt
     3241 ttcactaata cgcttccttt cgctatgatg aatttctagc taattcatct aacctcgaca
     3301 ttctgattaa tctccattta cttagacaac tactgtcttt ttagcaaaat atgtaatttt
     3361 tttatcattt ttttgatttt ctgaacattt tcattgaatt tctttgtaaa aagtacaaaa
     3421 aacgactgat ttaacttgtg cattaactca cattatgcat ataataattt tgttagacaa
     3481 aaagggagag gaagatgtat atgacgggat taggaacttt attgtttcta gtaggtattg
     3541 gtgtattgat ttttggactg gtgagcttta gaaggaaaaa ttggcctcgt aaaaaaacac
     3601 aaatcattat tattagttct attttagcta ttattattgg tgttggaatt attccgacca
     3661 cagacgagga agcctcaact gaagaaccaa ccaaacaaga agaaaaaacg gagaaagttg
     3721 ataatacccc aattttaaaa gcagaaacga cttttacaac agatgatgaa ggtaccttgg
     3781 tcgtcgaagg gaaaacaaat ccaggggcag aagtaacgct tgatttcgtt gcaattcctg
     3841 acgccgtgac tacagctgat gagaacggcg ctttcagtct ttctgtaaat caactggata
     3901 aagcacaaga tgccgttctt tctattgtca ttgatggcca aacgaaagaa caaacgctta
     3961 aactagcact aacccctgct tacgaaacaa aacttactgc taaagcggaa gcagagcgag
     4021 tagccgcgga aaaagcggaa gcagaacgag tagaacgcga acgtgtagca gcggaagaaa
     4081 aacgcgcagc tgatgcaaaa attgcggctg aaaagaaagc cgaagaagct agagtggcag
     4141 ccgagaaaaa agctgcggaa gaaaaacggg ttgcagcaga acgttcaaaa gctgcagctg
     4201 cacaaccgga cacgagtaac gaacaaggac aaatggttta tatcactgct actggcaaaa
     4261 gatatcatta tgatcaaaat tgtcgcggct taaataactc taatggcgaa actgctgtga
     4321 cagttgctca agcaaaggca caaggcttaa ctttatgtaa atttgaacaa taaaaaaaaa
     4381 gcaaaatttc ttatcatgag aaattttgct tttctatttg tttttaattg aatttaggct
     4441 agattcatgg taaatttaga tagataatat cggtaaaata tactaatgta aagcaatccc
     4501 tactttaatt atacaacaag aggttcttta cagtcaagta ttatttttcg aaaaaaattg
     4561 ggggataaat atatgaaacc atatgtactc aagtttcaag aaatacgacc gcattcagaa
     4621 gcacttgtcg gtggtaaagg aatgaattta ggtgcttgct cttatatcga aggagtacat
     4681 gttcccgcag gtttttgcct gacaacagaa gcttacaagc gaaccttagc ggaaaacaat
     4741 gaatttacgc aactgctcca acgcctttct tccctaaaaa caagtgacat ggatgctatt
     4801 agagaaatca gcgaaacgat tcgaacgctt attcaacata cacaaatccc ctctgaaata
     4861 gcgagttata tggatgctac gcttttagat gtgggtgggt atgagatgcc tttcgccgta
     4921 cgttctagcg ccactgccga agaccttccc cacgcttcct tcgctgggca acatgatacg
     4981 tatttaaata ttattggtaa agatgcctta ttacaacata tcagtatgtg ctgggcttct
     5041 ttgtttaccg aacgcgcgat tatttatcgc attcaaaatc agttcgatca tcgtaaagtc
     5101 caacttgccg tcgttattca acaaatgatt tcccccgaag catccggaat cctatttacg
     5161 gctgatccaa ttacatcgaa tcgcaaatcc ctctctatcg atgccagttt cgggctaggt
     5221 gaagcgcttg tttccggttt agtttctgct gactcataca cagtccgaga aaatactatt
     5281 acgaacaaaa taatcgctac taaaaaactc gccatttaca gtttaaaaga aggtggaacg
     5341 gagactcgca tacttgaaaa atcacaacaa accaagcaaa cattaactga ccaacaaata
     5401 atacaacttg cgaaacttgg tagaaaaatc gaagcctatt ttgggaaacc acaagatatt
     5461 gaatggtgtt tagcggaagg tgctttttac attgttcaga gtcgacctat cacgacttta
     5521 tatccaattc cagaagtaaa cgaacccggc aatcgtgttt atatttctgt tgcacatcag
     5581 caaatgatga ctgacgcgat gaaaccactg ggactttcct tttatttaat gacgactccc
     5641 gccacgatgt atacagcagg agggcggttg tttgtcgata ttactcagag cctgtcagcc
     5701 aaagtttctc gcgatatgat ggtcaattca ctcggtcaat cagacccact tattaaagat
     5761 gccttgctca ctgtaattaa caaaaaagga ttcctgcctc cactaccaac cgaggaaaat
     5821 ccaagtcagg cacccgtgtc tggaaaacca cccgtgcgta gcattcctga ttcatctagc
     5881 gtttttgaat tagttcgaaa cagcgaaaac tctataaagc acttgaagca atccattgaa
     5941 acgaaaaacg gatctgattt gtttgatttt atcgtagagg atttggaaga attaaagcga
     6001 gttttattta atcctactag cattgatgcc attatggcag gtatggacgc ttcagcttgg
     6061 ttaaatgaac atatctacca gtggctcgga gaaaaaaatg tcgccgataa actgtcagaa
     6121 tcagccccaa acaatattac ttcacaaatg ggacttgaat tattagatgt agctgacgtc
     6181 attcgcccct accctgctgt cagagcctat ttagaacaaa cgaaaaaccc tgatttcatg
     6241 aatgaactag ctactttaga aggtggtgca gaaaccaaaa aagcgctaga agattacctt
     6301 caaaaatacg ggatgcgctg tgcgggtgaa attgacttaa ccaaaactcg ttggattgaa
     6361 aacccgctaa cgcttattcc gctgatttta agtaacatca aaaatttcga ctccagcgcg
     6421 agtatgcaca aatttgctca gggagaaaaa gaagctttcc ataaagaaca agaaatccta
     6481 agacgtttgc aagagcttcc ggacggggaa caaaaagcga tggaaacaaa agaaaaaatc
     6541 gatattttac gtcatttcat cggctatcgt gagtatccta aatacgggat gattaatcgc
     6601 tactttattt acaaactggc tttacttcga gctggcgaac aacttgtaaa agatggcatt
     6661 ctgcaagagc atgaagatat ttattttctt tactttgagg aactgcgcga agtcgtgcgt
     6721 actggtcaag ttgattacga acttattaac gctcgaaaac gtgatttcgc cacttttgaa
     6781 aaattaacgc caccacgcat ccttacttct gatggagaaa tgattaacgg cgaatacaaa
     6841 cgcgaaaatc tccctaaaga cgccattctt ggacttccag tttcatcagg gacagttgaa
     6901 ggtcgcgctc gcgtcatttt agaaatggaa aaagcggatt tagaagatgg cgatattctt
     6961 gttacggctt atactgaccc tagttggact cccgcatttg tatctattaa agggcttgtg
     7021 accgaggttg gcgggcttat gacgcacgga gcagtgattg cgcgcgaata cggccttccc
     7081 gctgtcgtgg gtgtcgaaaa tgcaactacc attataaaag atggccagca aattcgcatc
     7141 aatgggacag aaggctatat tgagattctt gattaaacca aaaacccagt aatctccatt
     7201 ttaggaaata ctgggttttt taattatgct ttttttctcc aaatataaaa cgcggatgat
     7261 gaaagtaata tcccggcgaa tagtgtttgc cacgggttat tatctccagt tttcggaagt
     7321 ttagctgttg ttagttctgg agtattttcc cctgctgtta ctgtgatgtt attattttgg
     7381 gctggcatac tagttgcact cggttcattt atagtgattg atccattggt aggtttcgag
     7441 tctgattcgt cagatgggct aggaataagt ggcgtttctt tactgaaatg tgcgtacaaa
     7501 ttaatatcgt tcgcaggcat tttcatcgtg ttaaaatccc attttgttcc gcctacttct
     7561 gcgtcatacc acccatcgaa aaggaaacct tgtttggttg gagcagtcgg ttcattaagt
     7621 aaggtatcat atgttatcgt ttcattcgtt accgcaccat ctatatcaaa attagcttga
     7681 tagttgttga tggtaaaatg cgcatataaa gtgacatcat ttgcgggcat tttcattgtt
     7741 ttgaaatccc acttattacc gcctgtttct gcgtcatacc agccatcaaa tgtataacct
     7801 tgtttagttg gagtcgccgg ttcattgagt aaggcatcgt atactattgc ttcattcgtt
     7861 accgcaccat ctatatcaaa attcacttgg taactgctga cagtaaaatg tgcatataaa
     7921 gtaacatcat ttgcgggcat tttcatcgtt ttgaaatccc acttattacc gcctgtttct
     7981 gcgtcatacc aaccatcgaa tgtataacct tgtttggttg gagcggtcgg ttcattgagc
     8041 aaagtatcgt atactaccgc ttcattcatt actgcgccat ctatatcaaa attcacttga
     8101 taactattta cggaaaaatg ggcatatagc atgagatcat ttgcaggcat ttgcccagtt
     8161 gtaaagtccc attttgttcc acctgtttcg gcgtcgtacc aaccatcaaa tgtataacct
     8221 tgtttggtcg ggttcgtagg ttctggaatt agatcttctt ctgttacagt ttttacttcg
     8281 cttgtattgc cgtctatatt aaatgtgaca ttgtagtcta ctggctcatt tagcggttga
     8341 attatgatac cagtataact acttgtggtt gatcccaccg ccacatcttg cttgaatgta
     8401 tatcttactt ctggaagata gctcggcgaa gaccaattca cgtttggcgc gtcgtaggtt
     8461 ccattattgc taattgtctt aggagtaact agtgttccat ctatgctagt tatattattc
     8521 ggaacagata atgtcttcga aaaattacgt gctggttttt ttatcacctg atttgcaaag
     8581 tcagcggaat ccattttact taaacttgct aatggtctta tgtctgtaat atgattttgc
     8641 gataaaaata aagtagttaa attagttaat ccaccaatca cttccatatc ttcattccca
     8701 agttgattat tattcaaga
//
LOCUS       DASDXX010000113         8697 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.113, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000113 DASDXX010000000
VERSION     DASDXX010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8697
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.113"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..506)
                     /locus_tag="U0280_001970"
     CDS             complement(<1..506)
                     /locus_tag="U0280_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271898.1"
                     /translation="MAEPKYAIIINDIKRLISDGTFKPGEKIYSEDELKKKYNVSNTT
                     VVRALHELVRAGILARYQGKGTYVSKSIINEEVIFNEYTTVPNGRFNRKTKITNEHTK
                     VVAINEIQDARIAKKLQIPPENMIVHFQRIRLIDDVPWTVQNNYMAKSNLINVDLTNF
                     ERFNSLSEV"
     gene            747..1568
                     /locus_tag="U0280_001971"
     CDS             747..1568
                     /locus_tag="U0280_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEM2271899.1"
                     /translation="MGNSFSKWGKWILVLGLMFSVFSVSTAGQAAAKETVINKQMVTT
                     ASLNVRSTNSTSGKVIGWLKSNTKFKAIAKTSNNWYRFSLKGKNGYVSGKYVKAATAA
                     PAPKPSTPKIVQMNVPLIVQRPQLPTGCEITNIAMMLRYAGKNVDKVKLAKEMKRHKS
                     NPNYGFVGNPFSKSGWTIYPPALVNQVKKYTGSAKNMTGTNLAGIKNQLNKKRPVVAW
                     VSNFHGFSVHAITITGYDKNNFYYNDSWSGQKNARISQSYFNTCWSKQAKRAISY"
     gene            complement(1615..3048)
                     /gene="ascB"
                     /locus_tag="U0280_001972"
     CDS             complement(1615..3048)
                     /gene="ascB"
                     /locus_tag="U0280_001972"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM2271900.1"
                     /translation="MTESKFPKDFLWGGAVAANQCEGAYLEDGKGLSLVDILPTVEDG
                     RWEALFNPSKALATDYGFYPSHESIDFYHRYKEDIKLMAEMGFKCFRMSISWPRIFPN
                     GDETTPNEKGLAFYDAVFDECHKYGIEPVVTINHFDTPLEVFKKYGGWKNRKCIDFYL
                     NFCEAIFTRYKDKVKYWMTFNEINMILHLPYIGGGLDVTKEDNPEEVKYQAAHHQLVA
                     SALATKLGHEINPENQIGCMLAAGNTYPMTCNPKDVWKSIEADREGYFFIDVQARGYY
                     PSYTKRFFKEHNINIKMEDGDLDVLRDHTVDYVAFSYYSSRLTSADPEKNKETEGNVF
                     ATLKNPYLKASEWGWQIDPLGLRITMNTIYDRYQKPLFIVENGLGAVDTVAEDGSITD
                     DYRIDYMREHVREMGEAIEDGVELLGYTPWGCIDLVSAGSGEMKKRYGFIYVDRDNKG
                     NGTLNRSKKKSFDWYKKVIETNGKDID"
     gene            3274..4392
                     /locus_tag="U0280_001973"
     CDS             3274..4392
                     /locus_tag="U0280_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM2271901.1"
                     /translation="MKSRKKGIILVLSIIIIFSIGLLVNNIMTNNKDTAKQKKKTVAA
                     VKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEKGMDYPFNNVREELKSSDYTFVD
                     LETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAA
                     LRANNLAYVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGY
                     DINLVEEKIKEERAKNKDIDYMVVYFHWGVEKTNTPVDYQTQYVKKLVDDHLVDAIVA
                     SHPHWLQSFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFNQGKVTAHFDPGII
                     SGNQINMLDGSAKTAQLNYLQSISPNATINSNGDISAK"
     gene            complement(4444..4776)
                     /gene="qoxD"
                     /locus_tag="U0280_001974"
     CDS             complement(4444..4776)
                     /gene="qoxD"
                     /locus_tag="U0280_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit IV"
                     /protein_id="HEM2271902.1"
                     /translation="MTQNNKSNAAHAEGGIPWKHIVGFALSVILTLLAVWVALYSTLT
                     TNVKVVIIFIFAFIQAALQLLMFMHMTEGRDGKIQIGNILFAAFIAIVVVIGSYWVME
                     IGHMNHLL"
     gene            complement(4778..5389)
                     /gene="qoxC"
                     /locus_tag="U0280_001975"
     CDS             complement(4778..5389)
                     /gene="qoxC"
                     /locus_tag="U0280_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit III"
                     /protein_id="HEM2271903.1"
                     /translation="MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATY
                     FVMRKAGSNAGHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSII
                     TLILGAGFVGFELYEFAHYVTEGVTMQIGSYWSAFFVLLGTHGLHVTVGIFWISFILI
                     QIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN"
     gene            complement(5377..7356)
                     /gene="qoxB"
                     /locus_tag="U0280_001976"
     CDS             complement(5377..7356)
                     /gene="qoxB"
                     /locus_tag="U0280_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit I"
                     /protein_id="HEM2271904.1"
                     /translation="MKWNEFIVTGDPMILGAQISIVLVSIGVVALLTYTKKWKWLMKE
                     WISSVDHKKIGIMYLLAAVLMFFRGGVDALMMRTQLALPDMKFLDAQHYNEVFSTHGT
                     IMILFMAMPFIIGLMNIAVPLQIGARDVAFPFLNNLSFWTFFMGAMLFNLSFVIGGSP
                     DAGWTNYAPLATDFSAGYGINFYLLGVQIAGIGTLMTGINFFVTILRMRTKGMTLMKM
                     PMFTWSSLITSLIIIFAFPVLTVALALMSFDRLFGTAFFTLTNGGLPMMWANLFWVWG
                     HPEVYIVILPAFGIFSEIISTFSRKKLFGYPAMVAAMAVISLLSFLVWVHHFFTMGSG
                     ALVNSFFSITTMMIAIPTGIKIFNWLFTMYKGRITFTTPMLWSLAFIPNFVVGGVTGV
                     MLAMAAADYQYHNTYFLVSHFHYVLIAGTVFSCFAGLTYWYPKMVGYRLNEKIGKWFF
                     WIFVVGFNVCFFPQYFLGLDGMPRRIYTYVQGDGWTTLNFISTVGGFLMGVAFLVLCY
                     NIYYSYKNSKREVTGDPWDARTLEWATSSAVPPKYNFAVLPEWNDLDDFWNRKQKGDP
                     YVNDKNYKPIHMPSNTMVGFVMSVFFFIAGFGLVFYWYWMGIIGLVGILGCMIYRSFQ
                     NNDGYHVEVDEIKATEEHNARELATGVKEGNPWNL"
     gene            complement(7375..8481)
                     /gene="qoxA"
                     /locus_tag="U0280_001977"
     CDS             complement(7375..8481)
                     /gene="qoxA"
                     /locus_tag="U0280_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit II"
                     /protein_id="HEM2271905.1"
                     /translation="MSKVLKSLLLTALLGVTGLISGCGDLTVLNPKGPVAKGQSDLII
                     YSIIFMLVIVLTIFVLFTIMLVKYRERKDISNYEPDMHGSKKLEIFWTLIPVAIVIAL
                     AIPTVKTIYAGEEAPKVTSHKDPIVIYATSADWKWIFSYPDESIETVNYVNIPTDRPV
                     LFKLTSADTMTSFWVPQLGGQKYAMSGMTMNLYLQADEVGTYKGRNANFNGEGFADQR
                     FDVVAQSEKDFKKWAKETKASSPVITQDIYDRLLIPGSSKKKTYSGTHLAFVDVAADP
                     EYVFYAYKRFGYEMTNPHNPNTKSTISDEPMLPVRPVTVTNPQFERHDMKPQIIKNGE
                     GYHEDKHREDEMKKMEEDIQTNEFNKKESDDAGK"
BASE COUNT         2770 a         1731 c         1533 g         2663 t
ORIGIN      
        1 acttcagata aagaattaaa tctttcgaaa ttggttaaat ctacgttgat caaattggat
       61 tttgccatat agttattttg tacggtccaa ggcacatcat caataaggcg gattcgttga
      121 aaatgaacaa tcatattttc agggggaatc tgcaattttt tagcaattcg cgcatcctga
      181 atttcattta ttgcaactac ttttgtatgt tcgttagtaa tttttgtttt acgattgaat
      241 cttccgttcg gcactgtcgt atattcatta aaaataactt cttcgttaat aatagactta
      301 ctcacgtatg tgccttttcc ttgataacga gctaaaatcc cagctcgtac taattcatgt
      361 aatgctcgaa caactgtcgt attactaaca ttgtatttct ttttcagttc atcttccgaa
      421 taaatttttt cccctggctt aaaagttccg tcactaatta atcgcttgat atcattgata
      481 ataatagcgt actttggttc cgccataaca aattccccct aaagcatccc gcgcgttaac
      541 acgttaagtt ttaggttaat ggtaccatga taattttttg attgcaaact tgaattagcc
      601 tgctatcact gaactttaaa ttaataaccg gttaacacgt taagttcatt tttatagtac
      661 cacggccatt tcatttatgc aagcgttttc tttttatttt tccaaaatag ggtatacata
      721 agtaatctgt atcaaagggg gatataatgg ggaattcttt tagtaaatgg gggaaatgga
      781 tacttgtcct tgggttaatg ttcagcgttt ttagtgtttc tacagctggt caggcggcgg
      841 caaaagagac tgtgattaac aagcaaatgg taacaactgc aagcctaaat gttcgttcaa
      901 ctaattcgac ttctgggaaa gttattggtt ggcttaagag caatacaaag ttcaaagcga
      961 ttgctaaaac atcgaataac tggtatcgat ttagtttgaa aggaaaaaat ggctacgtat
     1021 ctgggaaata cgtcaaggcc gcaactgccg cgccggcacc aaaaccttca acgccaaaaa
     1081 ttgtgcaaat gaatgtgcct ttaatcgttc agcgtccaca attgccaact ggctgcgaga
     1141 ttacaaacat tgcgatgatg ctgcgctacg ctgggaaaaa tgtcgataaa gtcaaacttg
     1201 ccaaagaaat gaaacgtcat aaatccaatc cgaattatgg ttttgttgga aatccattct
     1261 ctaagagtgg ctggacgatt tatccaccgg ctttagttaa tcaagttaaa aaatatactg
     1321 ggagcgcgaa gaatatgact ggaacaaatt tagctggtat taaaaatcag ttgaataaaa
     1381 aacgtccagt tgtagcttgg gttagtaatt tccatggttt ttccgttcat gcgattacta
     1441 ttacaggtta tgataaaaat aatttttact ataacgacag ctggtccggt caaaaaaatg
     1501 cacgaatttc gcaaagttat tttaatactt gttggagcaa acaagcaaaa cgcgcgattt
     1561 catattaaaa taaaatcccc actttcgatg atgaaagtgg ggatttctga tatattagtc
     1621 gatatcttta ccatttgttt caattacttt tttgtaccag tcgaatgatt ttttcttcga
     1681 gcggtttagg gttccgttgc ctttattatc gcggtcaacg tagatgaagc cgtagcgttt
     1741 tttcatttcg ccagagccag cgctgacaag gtcgatgcag ccccatggtg tataaccaag
     1801 aagttccacg ccatcctcaa ttgcttcgcc catttcgcga acgtgttcac gcatgtagtc
     1861 gattctgtaa tcatcagtga ttgagccgtc ttctgccaca gtatccactg cacctaagcc
     1921 attttcaacg atgaaaagag gtttttgata acggtcgtaa attgtattca tagtaatacg
     1981 tagacctagt ggatcaattt gccaacccca ttcgcttgct tttaggtatg ggttttttag
     2041 tgttgcgaaa acgttgcctt ctgtttcttt gtttttctct ggatctgcgc ttgttagacg
     2101 agaagaatag tagctgaatg ccacgtaatc aactgtgtga tcgcgtaata cgtctaaatc
     2161 gccatcttcc attttgatgt tgatgttgtg ttctttgaag aaacgcttag tgtagcttgg
     2221 gtagtatccg cgtgcttgaa catcaatgaa gaagtagcct tcacggtccg cctcgataga
     2281 cttccagaca tcttttggat tacaagtcat tggatatgtg ttacccgctg caagcataca
     2341 accgatttga ttttcaggat tgatttcatg accaagttta gttgcaagtg ctgatgcaac
     2401 taattgatga tgagcagctt gatatttaac ttcctctgga ttatcctctt tagtaacgtc
     2461 taaacctcca ccaatgtatg gaagatgaag aatcatgtta atttcattaa atgtcatcca
     2521 atattttact ttatctttat aacgcgtgaa aattgcttca cagaaattca agtaaaagtc
     2581 gatgcattta cgatttttcc aaccaccata ttttttgaaa acttctagcg gagtatcaaa
     2641 atggttgatt gtaacaactg gttcgatacc atatttgtga cattcatcaa aaactgcatc
     2701 ataaaatgct aaaccttttt catttggtgt cgtttcatca ccattcggga aaatacgtgg
     2761 ccaactgatg gacatacgga aacatttgaa tcccatttca gccattaatt taatgtcttc
     2821 tttataacga tgataaaaat caattgattc gtgacttggg taaaaaccat aatctgtagc
     2881 aagcgctttc gatggattga ataaagcttc ccaacgtccg tcctctactg ttggaaggat
     2941 atcaacaagt gaaagtcctt taccgtcttc aagataagct ccttcacatt ggttggcagc
     3001 aactgctccg ccccataaaa agtctttagg aaattttgat tctgtcattt ttgtatatct
     3061 cctctcacga atataattta cttttccact atagaatatg taatgcatta catagcaagc
     3121 aataatttca aattttttaa attcattttc cattttatga ttttaaagtt cacaatttag
     3181 ccattaaaat ccaaaaaaaa gcctattttt gataaaaacc cttttctcca tactgataga
     3241 attagataac tttttaattt aggaggagaa aaaatgaaat caagaaaaaa agggattatc
     3301 ttggtactgt ctattattat aattttttcc atcggtttat tagtgaacaa catcatgaca
     3361 aataacaaag ataccgctaa acaaaaaaag aaaaccgtcg ctgctgttaa aaagaaaaaa
     3421 gaaacacctc caaaaccaaa agaaccattt aacattgatt ttacaggtga tattatgttt
     3481 gattgggatt tacgccccgt tttagcagag aagggaatgg attatccttt taataatgtt
     3541 cgcgaggaat tgaaatcaag cgactataca tttgttgatt tagaaacagc tattacaact
     3601 cgaacaaaaa aagtccccta ccaagaattt tggattaaaa gtgatcctag ttctttaaca
     3661 gctcttaaaa atgcaggggt tgatatggtt aatattagta ataaccacat tttagactat
     3721 tacgaagatg gattactcga cacaacggct gctttacgcg ccaataacct agcctatgtt
     3781 ggcgccggta aaaatgaaga tgaagcctat caacttaaag ttgctgacat caaaggtaat
     3841 aaagttggat tcatgtcgtt ttgccacttt ttcccaaata ctggttggat tgccgatgaa
     3901 gatactcctg gggttactaa tggttatgat ataaatttag tcgaagaaaa aatcaaagaa
     3961 gaacgcgcaa aaaataaaga tattgattat atggtcgtct attttcactg gggagttgaa
     4021 aagacgaata cacctgtaga ttatcaaacc caatacgtta aaaaactcgt ggatgatcat
     4081 ttagttgacg cgattgttgc tagccatcca cactggctcc aaagttttga ggtatacaaa
     4141 gatgttccaa ttgcttattc attaggtaat ttcttgtttc ctgactatgt ttctggtcat
     4201 tcagcagaaa caggtattta taaactgaat tttaatcaag gtaaagtgac tgcgcatttt
     4261 gatcctggta ttatttcagg taatcaaatt aatatgcttg acggttctgc caagacagca
     4321 caattaaatt atctccaatc catttctcca aatgcaacta ttaatagtaa tggtgatata
     4381 tccgcaaaat aaaaaaagct gatgctagtt cggttttaac cgttctaagc atcagcttat
     4441 tttttataac aaatgattca tatggccaat ttccattacc caataagaac caataactac
     4501 gacaatcgcg ataaatgcgg cgaataaaat attaccgatt tgaattttac catcgcggcc
     4561 ttctgtcata tgcatgaaca tcagaagctg tagggctgcc tgaatgaacg caaagatgaa
     4621 aataataact accttaacat ttgttgttag cgtcgaataa agagccaccc agactgctag
     4681 aagcgtcaaa ataactgata acgcaaagcc aacaatatgt ttccaaggaa tgccaccttc
     4741 agcatgagct gcatttgatt tattattttg tgtcatatta gttcaccatc cctagcaaat
     4801 agacaccggt gaaaatgaaa atccacacaa catccaagaa atgccagtat aaactggaaa
     4861 taaatacttt tgatgctgtt tttggcgtca aaccatgcat tttaatttga atcagaataa
     4921 aactaatcca gaaaatcccg accgttacgt gaagtccatg tgttcctagt agaacgaaga
     4981 atgccgacca gtaagaaccg atttgcattg taacgccttc tgtcacatag tgtgcaaatt
     5041 cataaagctc aaagccaaca aatcccgcac caagaattaa tgtgataatc gagtaaatcg
     5101 tcaacatttt cacattgcct ttacgcatct caccaattgc taaaccacac gtaaaactac
     5161 ttgttaaaag taaaaatgtc attattagca ctagccaaag ttcgaacatt tctgctggcg
     5221 gatgacccgc attcgagcca gcctttctca taacaaagta agtcgcaaaa agcgttgcaa
     5281 acaatgcaat ttcggcgcca aggaaaatcc agaatccaag aatatttaat cgaccttgtt
     5341 ctgatctata ttcaattggc agatttttat ttgtttctac agattccatg ggttaccctc
     5401 cttcacacca gtcgcaagtt cgcgcgcatt atgttcttct gttgctttaa tttcgtccac
     5461 ttcaacgtgg taaccatcgt tattttggaa tgaacgataa atcatacatc ctaaaatacc
     5521 aactaggcca ataattccca tccagtacca gtagaagact agtccgaaac ctgcaatgaa
     5581 gaagaagaca gacattacaa acccaaccat ggtattactt ggcatatgga ttggtttata
     5641 atttttatca tttacatatg gatcgccttt ttgttttcta ttccagaaat catccaagtc
     5701 attccattca ggtaaaacag caaagttata ttttggagga acagcggaac ttgtagccca
     5761 ttcaagcgta cgagcatccc acgggtcacc agtaacttca cgtttagagt ttttgtagct
     5821 gtagtagatg ttgtagcaaa gaactaagaa tgctacaccc atcaagaatc cgcccacagt
     5881 agagataaag ttaagcgttg tccagccatc accttgtacg taagtgtaaa tacgacgcgg
     5941 cataccatct agtcctagga aatattgcgg gaagaaacaa acgttaaatc caacaacgaa
     6001 aatccagaag aaccatttac caattttttc atttagtctg taaccgacca tttttggata
     6061 ccagtatgta agcccggcaa agcaggagaa cacagttcca gcaattaata cgtagtggaa
     6121 atgggatact aagaagtacg tattgtgata ttgataatcg gctgcagcca tcgcaagcat
     6181 aaccccagtt accccaccaa caacaaagtt agggataaag gcaagcgacc aaagcattgg
     6241 cgttgtaaag gttattcgcc ctttgtacat cgtaaagagc cagttgaata tcttaatccc
     6301 ggtcggtatc gcaatcatca tcgttgtaat ggagaagaag gagttaacaa gcgcccctga
     6361 tcccattgta aagaagtgat ggacccaaac taggaaactt agtaaagaaa taactgccat
     6421 cgcggcaacc atcgccggat aaccgaataa ttttttcctc gagaaagtag aaataatctc
     6481 tgagaaaata ccgaaagctg gcaaaataac aatatatact tccggatgac cccaaaccca
     6541 gaacaagttg gcccacatca ttgggagccc gccattcgtg agtgtgaaga atgctgtccc
     6601 aaacagtcgg tcaaatgaca tcaaagcaag tgccactgtt aaaactggga aagcgaaaat
     6661 aatgatcaaa cttgtaatta atgaagacca agtaaacatt ggcattttca ttaacgtcat
     6721 accttttgta cgcattctta aaatcgtgac gaaaaagtta atccccgtca tcagcgtacc
     6781 aataccagcg atttgaacac ctagaagata gaagttaatt ccatatccag cgctaaaatc
     6841 tgtcgcaagt ggcgcatagt ttgtccaacc agcatctggc gaaccaccaa ttacgaatga
     6901 taagttaaat agcatcgctc ccataaagaa cgtccaaaaa cttaagttgt ttaaaaatgg
     6961 aaatgctaca tcacgcgcac caatttgaag tggtacggca atgttcatca atccgatgat
     7021 aaacggcatc gccataaata aaatcataat cgttccatgt gtagaaaaaa cttcattgta
     7081 atgctgtgcg tctaaaaatt tcatatccgg taaagcgagc tgggtacgca tcattagcgc
     7141 atccacacca ccacggaaaa acattaagac agcagcaagc aagtacataa taccaatttt
     7201 tttatgatca acggaagaaa tccactcttt catgagccac ttccattttt ttgtataagt
     7261 tagtaacgca acaacaccaa tacttacaag tacgatagaa atctgcgcgc ctaaaatcat
     7321 tgggtcgcca gttacgataa actcattcca tttcatgcct tatgtccccc ctttttactt
     7381 ccctgcgtca tccgattctt ttttattgaa ttcatttgtt tggatgtctt cttccatttt
     7441 cttcatttca tcttcgcggt gtttatcctc gtggtaacct tcgccgtttt taataatttg
     7501 tggcttcata tcatgacgct caaattgcgg attagttact gtcacaggac gaaccggaag
     7561 cattggttca tcagaaatgg ttgattttgt gtttggatta tgcggatttg tcatctcata
     7621 accaaaacgt ttgtaggcat agaaaacata ctctggatca gctgctacat caacaaatgc
     7681 taaatgcgta ccagaataag tctttttctt agagcttcca ggaattaaaa gacgatcata
     7741 tatgtcttgt gtaataactg gcgagcttgc ttttgtttct ttcgcccatt ttttgaaatc
     7801 tttttcagat tgagctacta catcaaagcg ttgatccgca aaaccttcgc cgttgaaatt
     7861 tgcgttacgc cctttatacg taccaacttc atctgcttgt aaatataaat tcatcgtcat
     7921 gccagacatc gcatattttt gtccacctaa ttgcggaacc caaaagcttg tcatcgtatc
     7981 tgcagaagtt aatttgaata gtacaggacg gtcggttgga atatttacat agttgactgt
     8041 ttcaattgac tcatctggat aactaaaaat ccatttccag tctgcacttg ttgcgtaaat
     8101 aacaattgga tctttatgcg aagtcacttt tggtgcttct tcccctgcat aaattgtttt
     8161 tacagtcgga atagctagag caataacgat tgcaactgga atcaatgtcc aaaaaatttc
     8221 cagtttttta ctaccgtgca tatccggctc atagtttgaa atgtctttcc gttcgcggta
     8281 tttaaccaac ataatcgtaa acaatacaaa aatcgtcaaa acaataacca gcataaatat
     8341 aatcgaataa ataattaagt ccgactgacc ttttgcaact ggcccttttg gattaagtac
     8401 cgtcaagtca ccacaaccac ttataaggcc ggtaacccca agtagtgccg taagcagcaa
     8461 agatttaagt acctttgaca cccgaatccc ctcttttcct tttgatgttt tctaatgtgt
     8521 atttttgcgc aaaaatacca ttaccggagt gctgaaagaa gcttgttaga actcctatgt
     8581 aactgaaaaa atgcttttac tatttagttc ttttaaaaaa actcacaaac ttttttaaaa
     8641 attaatcagc atttttagaa tcactatgtt catactctaa ctcattatat ctgattt
//
LOCUS       DASDXX010000114         8631 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.114, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000114 DASDXX010000000
VERSION     DASDXX010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8631
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.114"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1723
                     /locus_tag="U0280_001978"
     CDS             <1..1723
                     /locus_tag="U0280_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271906.1"
                     /translation="WQYVRKYRLLMIGVFILIFIASGISIIYPLLGGKVIDDVVYQNK
                     TNLLIPLLLIMIISTIIRTICRYTYQIMCERIGQNSLFRIREDLYKKLQSLDFDFFNN
                     TRVGDIMARMTGDTDAIRHFVSWVSYNILENVFLFSFAIIIMAAIDWKLTLALVIVTP
                     LIAILTMKMSSKAQPVFYEIRESFSRLNSMVEENISGNRVVKAFAREDFEMKKFHEHN
                     EDFKKRNLDSADVSRTYLPVLDSLAGMLVVITLIFGGYLVIKGQMTLGDLVAFNGFLW
                     MLNGPMRMSGWLINDVQRFIASSFKIQDMMATDAKIPIHAEKPAPSLQGHVEFKNVSF
                     HFEDDPNTDVLKNISLKASPGQTIAILGETGAGKSTLVNLICRFYDPTSGEILIDGVD
                     ARKWHVRELRNHIATVMQDIFLFSDTIEGNIAFGAPDATMEDVRRMARIADADHFIET
                     MPESYDTIVGERGVGLSGGQKQRISLARALLKNPSILILDDTTSAVDMETEVKIQGEL
                     KKITENTTTFIIAHRISSVKEADEILILNHGEIIERGTHSSLLAEKGYYFDIYNKQLG
                     TEANVNG"
     gene            1716..3497
                     /locus_tag="U0280_001979"
     CDS             1716..3497
                     /locus_tag="U0280_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2271907.1"
                     /translation="MARNKFDIDEELETAFSAAHLKRILVYVKPYQKSIYITLFVILL
                     ANVATMIGPYLTKIVIDDTIPNKNMTQLFWIAIIFIVSVVVTGLCMRYRIRSITLIGQ
                     DILKDMRTAIFGHLQKLPFSYFDSRPHGKILIRVVNYINMLSDLLSNGLINLISDILS
                     VIVTLGFMLMIDPVLTLYSLALIPVLFVIVMVIKTAQRKAYQVLSNKQSNMNAYIHES
                     IAGIKVTQSFSREEENFEIFTEVSNEYRRSWMKAVKIQFLLWPGVQNIAVMTTCLIYF
                     VGIKGYGVDVSTGTLIAFIGYVGNFWNPVINIGNFYNSLITATTYLERIFETMDVEPD
                     IKDVPNAKKMPPIVGNVDFKDVYFRYEEGVDILKGINFHVDAGESIALVGPTGAGKTT
                     IINLLSRFYNINSGEILVDGENVEEVTLRSLRSQMGVMLQDTFIFSGTIIENIRYGKL
                     DATEEEIIAAAKVVRAHDFISGLKDGYYTEVKERGSTLSAGQRQLISFARALLADPKI
                     LILDEATSSIDTQTEILLQEGLERLLEGRTSFIIAHRLSTIKNSSRIFYIDNGRIQEA
                     GSHEELMAQHGYYYNLYQSQFDMLQAL"
     gene            complement(3522..4424)
                     /locus_tag="U0280_001980"
     CDS             complement(3522..4424)
                     /locus_tag="U0280_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2271908.1"
                     /translation="MYFVYDIGGTFVKFALMENNGTVKMKDKFPTTAKSAEELVAQMV
                     EKWRPYSTEVKGIAVSCPGVVDTEKGVIYQGGSLLFMHEKNLAEMLARECHVPVVLQN
                     DAKSAALAELWLGVAKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETSF
                     DTKKLRGTFFGRTGSAVELIKRIASKKNLPNKKDGEQVFELINQGDEEANAIFDVYIY
                     ELTSQILNIQYLIDPEIIAIGGGISAQPVVVDRLNEAVAEIKDANPYHAAQPKIVTCH
                     FQNDANLYGALYNFFLQMDVQNKR"
     gene            complement(4527..6797)
                     /gene="chiB"
                     /locus_tag="U0280_001981"
     CDS             complement(4527..6797)
                     /gene="chiB"
                     /locus_tag="U0280_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase ChiB"
                     /protein_id="HEM2271909.1"
                     /translation="MKKLFSITSVVLLVLSLVVVSIGAEPKRAKAAENVPQYRNVMYY
                     GDWSIWGGEGNFYPKDIPADQLTHLNFAFLDFNSNGDLVFTDKDAAVGAPVGQEGVQW
                     GGANAGVLNAIQDLRAQNPNLKIGVSVGGWSKSGDFSTVAADPTKRANFVKNVMKFVK
                     YTNMDFVDLDWEYPASVRDADLVDNKNDEGTPNAKPADKQNFITLLQDLRTALDKQGV
                     DINKKYELSVALPAAKSTLENGIDVANLFKVVDFANVMTYDLNGAWTPNSAHHTALYG
                     NPKDPNYDSGFSVDQTVKYLKEKGAVSNKIVVGAAFYTRGWNKVAAGTDTALPGLFQA
                     AEKTNKDADGSLTYGANNENPIKTGDGGRAGGVWAYRSIDALKAKTPTLKEYWDDTAK
                     APYLYSKETGEFYTYDNTRSIGYKAQYVKDNNLGGMISWMQSQDKTTTSTKRDELTKA
                     IKSGLFGTNAIPQNAITYANLNVVATVKPYSENGVGYEITITNNEKADETNEVLKSTE
                     LSFETVKLPKFYIPVKAGETLTAGDYKAGTVTTSGGNTVVDLASVYDAQQIPQGASYT
                     FRLKSSASSVDVANISKIDLTQRMVKSSVEFGKQTIFGGGTVVPDPSDTEAPTVPKAL
                     TSSNVTDKSATLTWTASTDNKAVAGYKVYRNGTEVGSVSGTTFTDSGLTAKTAYSYTV
                     KAYDAAGNFSAASSALTVTTLDAATPPATPAWDAAKTYNKGDRVSYKGKTYEAQWWTQ
                     GNEPGAEQWGPWLLIN"
     gene            complement(7088..7459)
                     /locus_tag="U0280_001982"
     CDS             complement(7088..7459)
                     /locus_tag="U0280_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271910.1"
                     /translation="MTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEK
                     TKVCVTNWFYGSQEAVLENNNDVIVRINRKALILNYSMFPFLFFGLLATSWESTVIAL
                     ILCLASFFYSRKHWFEFVKIK"
     gene            complement(7555..8187)
                     /locus_tag="U0280_001983"
     CDS             complement(7555..8187)
                     /locus_tag="U0280_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM2271911.1"
                     /translation="MTYVNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPS
                     SVNMQPWRFVVVESDAGKEKLSSLVRFNTRQNESSSAMILVFGDLENFENGEKIYGES
                     VERGLMPAEVKEQQMAKLSQYFASIPRTEAERVVLIDGGIVAMQLMLVARAHGYDTNP
                     IGGFERKEVAEAFNMDPERYVPVMIVSIGKAKNSGYQSYRLPITDVTTFA"
     gene            complement(8201..8491)
                     /locus_tag="U0280_001984"
     CDS             complement(8201..8491)
                     /locus_tag="U0280_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2271912.1"
                     /translation="MLHIEAQITVKKEQTEAFLQAAKEVIAASRAEAGNHGYELVQST
                     ENETVFYMLEKWADMEAIQQHNDSEHFKKFQKLAADFVAKELEISVLTPLAR"
BASE COUNT         2483 a         1866 c         1549 g         2733 t
ORIGIN      
        1 ttggcaatat gtccgaaaat atcgtctact tatgattggt gtatttattt taatttttat
       61 cgcttcaggt attagtatta tttatccgtt acttggcggg aaagtgattg acgatgttgt
      121 ctatcaaaat aaaacgaatt tgcttatccc gctactttta atcatgatta tttcgacaat
      181 tattcgaact atttgccgtt atacctatca gattatgtgc gaacgaattg ggcaaaattc
      241 ccttttccga attcgagaag atttatataa aaagttgcaa tcactcgatt ttgatttttt
      301 caataatacg cgcgttgggg atattatggc gcggatgact ggtgatacgg atgcgattcg
      361 tcattttgtt tcgtgggtat cttacaacat tttggaaaat gtatttttat ttagttttgc
      421 aattatcata atggccgcga ttgactggaa attaacgctt gcgcttgtta tcgtaacacc
      481 gcttattgct attttaacga tgaaaatgtc gagtaaagcc caaccagttt tttatgaaat
      541 tcgggagagc ttttcacggc tcaattcgat ggtggaagag aatattagcg ggaatcgcgt
      601 cgtaaaagcc tttgcgcgag aagattttga aatgaagaaa ttccatgaac acaatgagga
      661 tttcaaaaaa cgtaatctag attctgccga tgtttccaga acctatttgc cagtgcttga
      721 ttcgctcgcg ggcatgctcg ttgtcatcac gcttattttc ggtggctatt tagtaattaa
      781 aggccaaatg acgctgggag atttagttgc cttcaatgga ttcctatgga tgctaaacgg
      841 cccgatgcgc atgagtggct ggctgattaa cgacgttcaa cgctttatcg cttcttcgtt
      901 taaaattcaa gacatgatgg caactgacgc taaaatcccc atccacgctg aaaaacctgc
      961 gccatcactt caaggtcacg tcgagtttaa aaatgtcagt tttcatttcg aggacgaccc
     1021 aaacacggac gtactcaaaa atatttcact aaaagcttct ccaggccaaa cgattgctat
     1081 tctgggtgaa actggcgctg gaaaatcaac actcgtcaac ttaatttgcc gattttacga
     1141 tccgacttcc ggtgaaattt taattgatgg tgtcgatgcg cgaaaatggc atgtgcggga
     1201 acttagaaac catatcgcca cggtgatgca agatattttc ctattttctg atacgattga
     1261 aggaaatatt gcatttggcg ctccggatgc aacaatggaa gatgtccggc gtatggcgcg
     1321 aattgcagac gcggaccact tcatcgaaac catgcctgaa agttatgaca cgattgttgg
     1381 tgaacgcggt gtcggacttt ctggcggaca aaagcagcgg atatctttag ctcgtgctct
     1441 tttaaaaaat ccatccattt tgattttgga tgataccact tccgctgtcg atatggaaac
     1501 cgaagtgaaa atccaaggtg aattaaagaa aatcacggaa aatacgacca catttatcat
     1561 tgcgcaccgg atttcttctg taaaagaagc cgatgaaatt ttaattttaa atcatggcga
     1621 aatcatcgaa cgcggcacac actctagttt gctagcagaa aaaggttatt attttgatat
     1681 ttacaataaa caacttggaa cggaggcgaa tgtgaatggc tagaaataaa tttgatattg
     1741 acgaagaact ggaaacagcc ttcagcgccg cacatttaaa acgtattctc gtttacgtaa
     1801 aaccctatca aaaatccatt tatattacgc tctttgtcat cttattagca aatgtagcaa
     1861 caatgattgg cccgtattta accaaaatag tcatagatga tacgattcca aacaaaaaca
     1921 tgacacaact attctggatt gcgattattt tcatagtttc tgtcgttgta accggacttt
     1981 gtatgcgata ccgcattagg tcgattacgc ttattgggca agacatttta aaagatatgc
     2041 ggacagcgat tttcggtcat ttgcaaaagc tgcctttctc ttattttgac agtcgcccgc
     2101 atggtaaaat tttgattcgt gttgttaatt acatcaatat gctcagtgat ttattgtcca
     2161 atgggctgat aaatctgatt tccgatattt taagtgtcat tgtaacgctt ggttttatgt
     2221 tgatgattga tccagtgtta acgttgtata gtttagcgct tatcccggtt cttttcgtga
     2281 ttgttatggt cattaaaacc gcgcaacgaa aagcttatca agttctaagc aataaacaat
     2341 ccaacatgaa cgcctatatc catgagagca tcgctgggat aaaagtaacg caaagctttt
     2401 cgcgagaaga agagaatttt gagattttca ccgaggtaag taatgagtac cgccgttctt
     2461 ggatgaaagc ggtgaaaatt caattcttgc tttggcctgg ggttcaaaat atcgccgtaa
     2521 tgacgacttg tttaatttac ttcgttggaa tcaaaggtta cggtgtggac gtttctaccg
     2581 ggacactgat tgctttcatc ggttatgttg ggaatttttg gaatcctgtt attaatattg
     2641 gaaacttcta taattcgctt attaccgcaa cgacttattt ggagcgaatt ttcgaaacga
     2701 tggacgttga gcccgatatt aaagatgtcc caaatgcgaa aaaaatgcca ccaatcgttg
     2761 gaaatgttga ctttaaagat gtttatttcc gttatgagga aggtgtggac attttaaaag
     2821 gaattaattt tcatgtggat gcgggtgaat caattgcgct cgttggtccg actggcgctg
     2881 gaaaaacgac catcataaac ttgctcagcc gtttttataa tataaattct ggagaaattt
     2941 tagttgatgg ggaaaatgtc gaagaagtca cgcttagatc actcaggtcc caaatgggcg
     3001 tgatgctcca agataccttt attttttcag gaacgattat tgaaaatatt cgctacggga
     3061 agctagatgc aaccgaagaa gaaattatcg cggctgccaa agtcgttcgt gctcatgatt
     3121 tcatttccgg attaaaagat ggctactata ccgaagtaaa agaacgaggt agcactcttt
     3181 cggccggtca gcgacaactg atttcctttg cccgtgctct tttagccgat ccgaaaatcc
     3241 tcatccttga tgaagcaact tcaagtattg atacacaaac agaaatccta ctccaagaag
     3301 ggcttgagcg actgctggaa ggccgaacat ccttcattat cgcgcacaga ctttcgacaa
     3361 tcaaaaacag ttcgcgcatc ttctacattg ataatggtcg cattcaagaa gctggcagtc
     3421 acgaagaact gatggcacag cacggctact actataattt atatcaatca cagtttgata
     3481 tgttgcaagc tttatagaaa aaaggtaact agagattcta gttacctttt attttgcaca
     3541 tccatttgta aaaagaaatt atacaatgct ccgtacaaat tcgcatcatt ttggaaatga
     3601 caagtgacga ttttcggttg tgcggcatga taaggattag catcttttat ttctgcgaca
     3661 gcttcgttta gtctatcaac aacaactggt tgagcgctaa tgccaccacc aattgcaata
     3721 atttccggat caatcaaata ctggatattt aaaatttgag atgttaattc ataaatatac
     3781 acatcaaaaa tagcattcgc ttcttcatcg ccttggttaa ttaattcgaa aacctgctca
     3841 ccatcttttt tattgggtaa attcttcttt gatgcaatgc gcttaattaa ctccaccgct
     3901 gatccagttc ttccaaagaa tgtacctcgc aatttcttcg tatcaaaaga agtctccata
     3961 aaactaactt ctcccgccat caaatgatag ccagattgta atttaccatc cataataatt
     4021 ccgccaccaa cgccacttcc aagcgttaaa atcgccgcgc tatgtacatt ttttgccaca
     4081 cctaaccaaa gttccgctaa agccgcactc ttcgcatcat tttgcaagac aacgggaaca
     4141 tgacattcac gcgctagcat ttcagccaaa tttttctcat gcataaataa tagcgagcca
     4201 ccttggtaaa tcacgccttt ttccgtatct accactcccg gacaactcac agctatgccc
     4261 ttcacttctg tactataggg gcgccacttt tcgaccattt gagctacaag ttcttctgca
     4321 cttttggcag ttgtagggaa tttatctttc attttcaccg taccgttatt ttccatcaac
     4381 gcaaatttaa caaaagttcc accaatatcg tatacaaaat acatccttct gcaccctctc
     4441 ttgtcgcttt tattcattgt aatacgtttg gtcacttttt caaataaaaa cagagattct
     4501 ccgaaaagaa tctctgtttt tgtctattaa tttattaaca accaaggacc ccactgttca
     4561 gctcctggct catttccctg agtccaccac tgtgcttcat atgttttccc tttgtaagaa
     4621 accctatctc ccttattgta cgttttggca gcgtcccatg ctggagttgc tggtggtgtt
     4681 gccgcatcaa gcgttgtcac agttaaggcc gagcttgctg ctgagaaatt cccagccgca
     4741 tcatatgctt ttactgtata agaatacgct gtttttgcag ttaagccact atctgtaaaa
     4801 gtagttcctg aaacagagcc cacttcggtc ccatttcggt acactttata tccagccact
     4861 gctttattgt ccgttgaagc tgtccacgtt agagtagcag atttatcggt tacattagaa
     4921 gatgtgagtg cttttggtac tgttggagct tctgtatcgc ttggatcagg tacaacagtt
     4981 cccccgccaa aaatcgtttg tttaccaaat tcgacactcg attttaccat ccgttgtgtt
     5041 aaatcaattt tagaaatgtt agctacatcc acactagatg cactcgattt taaacggaac
     5101 gtataagatg cgccttgcgg aatttgttgc gcgtcgtata cagaagctaa atcaactact
     5161 gtattgccac ctgaagtagt aactgtaccc gctttataat cgccagcagt taacgtttcg
     5221 cccgctttta ctggaatata aaacttaggt aatttcactg tttcaaacga tagctcagtt
     5281 gatttcaaaa cttcattggt ttcgtccgct ttttcattgt ttgtaattgt aatttcgtac
     5341 ccgaccccat tttcgctata aggtttcact gtcgctacca catttaaatt cgcataagta
     5401 atcgcgtttt gcgggatagc gtttgtgccg aataatcctg atttaatcgc ctttgtgagt
     5461 tcatcgcgct tagttgaagt cgttgtttta tcctgcgact gcatccaaga aatcatccca
     5521 ccaagattat tatcttttac atactgtgcc ttatagccaa ttgaacgcgt attgtcatat
     5581 gtgtaaaact ccccagtttc cttactataa agatacggcg ccttggcagt atcatcccaa
     5641 tattctttca atgttggcgt tttagctttt agcgcatcaa tacttctata cgcccaaact
     5701 ccgccagcac ggcccccatc gcctgtttta attgggtttt cgttgtttgc cccgtaagta
     5761 agcgagccat ccgcatcttt attcgttttt tcagcagctt ggaaaagccc tggcaatgcc
     5821 gtatccgttc cagcagctac tttattccag cctcgagtgt aaaatgctgc cccaacaaca
     5881 attttattcg aaactgctcc cttttctttt aagtatttaa cggtttggtc gacagaaaaa
     5941 ccactatcat aattcggatc tttcggattg ccgtaaagcg ctgtatgatg cgcactattc
     6001 ggtgtccaag caccatttaa gtcatacgtc atcacattcg caaaatcgac tactttaaat
     6061 aaattcgcta catcaatccc attttctaaa gtagattttg cagctggtaa agcaaccgat
     6121 aattcgtatt tcttgttaat atccacgcct tgtttatcca aagccgttct taaatcttgt
     6181 aaaagtgtaa taaagttttg cttatccgca ggttttgcat ttggtgtgcc ttcatcgttt
     6241 ttattatcaa caaggtcagc gtcccgtacc gaagcaggat attcccagtc caaatcaaca
     6301 aaatccatat tagtatattt cacaaacttc atcacgtttt tcacaaagtt agcccgtttt
     6361 gttggatccg ctgcaactgt cgagaaatct cccgacttag accagcctcc aactgaaacc
     6421 cctattttca aattcggatt ttgagcgcgc aaatcttgaa tcgcattcaa aacgcctgca
     6481 tttgctccgc cccattgaac tccctcttgt ccaacaggcg ccccaacagc agcatcttta
     6541 tcagtaaaaa ctaaatcccc attactatta aaatccagaa aagcaaaatt caaatgtgtt
     6601 aattgatcag ctggaatatc tttcggataa aagttccctt ctcctcccca aatcgaccaa
     6661 tcaccgtaat acataacatt ccgatactgt ggtacatttt cagccgcttt cgcccgtttt
     6721 ggctctgcac caattgatac aaccactaac gataaaacta acaacacaac agaagtaata
     6781 ctaaaaagct ttttcatctt cttattcatc tcttcacccc gatttttgat ttataaacct
     6841 catttcggta gttctaagtt tgtctctctg tacccctttt tgtgtggttg cccgaatgtt
     6901 cttctctcta atttcctccc tccaattaaa gattcattcc gagcatctgt atatcatgca
     6961 attatcatgc caaaagaaag cgctgtcatt ctgcggttta agaccccttc ctaagataca
     7021 cagatggaat aaaaacttac acagataaaa aaagcatgag aacatatccc acgctatcca
     7081 tgaattatta tttaattttc acaaattcaa accaatgctt tcgcgaataa aaaaaggatg
     7141 ccaaacaaag tattaacgca atgactgtag actcccaact agtggccaaa agtccgaaaa
     7201 aaagaaatgg aaacattgaa taatttaata ttagtgcttt acggttaatc cgcacaataa
     7261 catcattatt attttccaaa accgcttcct gactcccata aaaccaatta gtcacgcaaa
     7321 cctttgtttt ctccatctta ggcataaaaa aatgagactg atgattgtcg agttttacaa
     7381 tttcttcatt ttcgattcta attttcaccg gagtaatacc gctgccaatt ccagttttac
     7441 gagttatttt gatagtcata gttgcttctc ctccttggct gtatgttatt ttaattatat
     7501 caagaaagga acaaaaaaag aacaaggaaa tatcagctat ttccttgccc tcttttaagc
     7561 aaaagtcgta acatccgtaa ttggtaatcg ataagactgg tagccagaat ttttagcttt
     7621 accgatagaa acaatcataa ccggtacata acgctctgga tccatattga aggcctcagc
     7681 aacttcctta cgttcaaaac caccaattgg atttgtatca taaccatgcg cacgagcaac
     7741 taacattaat tgcatcgcta caattccgcc gtcaataaga actacacgtt ctgcttctgt
     7801 gcgcggaatg gatgcaaagt actggcttaa tttagccatt tgttgttctt tcacttctgc
     7861 cggcatcaag ccgcgttcaa ctgattctcc gtaaattttt tcaccgtttt caaaattctc
     7921 taagtcgcca aaaactagga tcattgcgga agaagattca ttttgacgtg tattaaagcg
     7981 aactaacgag cttaattttt ctttacccgc atcactttcc acgaccacaa aacgccatgg
     8041 ttgcatgttt acagaggaag gagccgttac cgcgtcctct agaatagctt tcatttcttc
     8101 ttggctaatt ttcaccgttt catcgtattc tcgaatcgag cggcggtttt tcattaagtc
     8161 ttcaaaatca ttatttacat aagtcatatt atggtcctcc ttatcgcgca agtggcgtta
     8221 atactgaaat ttcaagttct ttagcaacaa aatcagcagc caatttctgg aattttttga
     8281 aatgctcgct gtcgttgtgt tgttgaatgg cttccatatc cgcccatttt tctaacatat
     8341 aaaaaactgt ttcgttttct gttgattgta ctaattcata accatgattc ccagcttctg
     8401 ctcttgatgc agcaataact tccttagccg cctgcaaaaa agcttcggtt tgttcttttt
     8461 tgaccgtaat ttgcgcttca atatgcaaca tttcccaaca acttctttca gatttgatag
     8521 ttcgattaat ttcgaactat cataatataa catagcagca agttccgcgc aattaaaatg
     8581 taagttatga tatgatattt atatgaaaaa gttaaatgag ctctcaaaat c
//
LOCUS       DASDXX010000115         8591 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.115, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000115 DASDXX010000000
VERSION     DASDXX010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8591
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.115"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            330..1445
                     /gene="pdhA"
                     /locus_tag="U0280_001985"
     CDS             330..1445
                     /gene="pdhA"
                     /locus_tag="U0280_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HEM2271913.1"
                     /translation="MASKTKKAIIDVKKQFEAVHKQFELVQILNEKGEIVNPDLMPDL
                     TDDELVELMTRMVWTRVLDQRSISLNRQGRLGFYAPTAGQEASQLASHYALEKHDYIL
                     PGYRDVPQLIWHGLPLTKAFLFSRGHFVGNQFPEDLNVLSPQIIIGAQIVQAAGVALG
                     LKKRKKDAVVITYTGDGGSSQGDFYEGMNFAGAYHAPAIFVVQNNKFAISTPREKQSA
                     AETLAQKAVAAGIPGVQVDGMDPLAVYAVTKFARERAVAGEGPTLIETMTYRYGPHTL
                     SGDDPTRYRTKELDGEWELKDPIVRFRTFLEGKGLWNEEKENAVIDQAKEEIKVAIKE
                     ADATPKQTVTDLLKNMYETPTAPIKEQLAIYEAKESK"
     gene            1448..2425
                     /locus_tag="U0280_001986"
     CDS             1448..2425
                     /locus_tag="U0280_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM2271914.1"
                     /translation="MAQKTMIQAITDALAVELEKDENVLVFGEDVGKNGGVFRATEGL
                     QEKFGEDRVFDTPLAESGIGGLAIGLALEGFRPVPEIQFFGFVFEVMDSVAGQMARMR
                     YRTGGTRTAPITIRAPFGGGVHTPEMHADNLEGLMAQSPGLKVVIPSTPYDAKGLLIS
                     AIRDNDPVIFLEHMKLYRSFREEVPEGEYTVEIGKAAVRREGTDVSIITYGAMVQESM
                     KAAEALEKDGVSVEVIDLRTISPIDVETIIASVKKTNRAVVVQEAQKQAGIAANIVAE
                     INDHAILSLEAPVMRVAAPDSVFPFSQAETVWLPNHNDIIERVKEVIAF"
     gene            2536..4170
                     /locus_tag="U0280_001987"
     CDS             2536..4170
                     /locus_tag="U0280_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HEM2271915.1"
                     /translation="MAYSFKLPDIGEGIHEGEIVKWFVQPGDKIEEDESLFEVQNDKS
                     VEEITSPVSGTIKEIKVAEGTVATVGQVLVTFDGVEGHEDDAEEESAAPKAESTESTP
                     APAQASGKGIFEFKLPDIGEGIHEGEIVKWFIQPGDKVEEDQSIFEVQNDKSVEEITS
                     PVDGTVKDILVSEGTVATVGQVLVTFEGDFEGEASHESTPESPAEEAELTNNDATSAP
                     VTGGNGTPSSKKDPNGLVIAMPSVRKYAREKGVNIAEVAGSGKNNRVVKADIDAFLNG
                     EQPAASTTTAQTEEKAAAPKAEKAAAKQPVASSDAYPETREKLTPTRRAIAKAMVNSK
                     HTAPHVTLMDEIEVTALMAHRKRFKEVAAEKGIKLTFLPYMVKALVATLRDFPVLNTT
                     LDDATEELVYKHYFNVGIAADTDHGLYVPVIKNADKKSVFQISDEINELAGKARDGKL
                     TADEMRHGSATISNIGSAGGQWFTPVINYPEVAILGVGRIAQKPIVKDGEIVAAPVLA
                     LSLSFDHRVIDGATAQKAMNNIKRLLNDPELLLMEV"
     gene            4175..5578
                     /gene="lpdA"
                     /locus_tag="U0280_001988"
     CDS             4175..5578
                     /gene="lpdA"
                     /locus_tag="U0280_001988"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM2271916.1"
                     /translation="MVVGDFPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIEKEYYG
                     GVCLNVGCIPSKALITIGHRFKEAGHSDNMGITADNVNLDFTKAQEWKGGVVNKLTSG
                     VKGLLKKNKVEMLEGEAFFVDDHSLRVIHPDSAQTYTFNNVIIATGSRPIEIPGFKYG
                     KRVLSSTGALALTEVPKKLVVIGGGYIGTELGGAFANLGTELTILEGGPEILPTYEKD
                     MVSLVKRNLKSKNVEMVTKALAKSAEETENGVKVTYEANGETKTIEADYVLVTVGRRP
                     NTDEIGLEQAGVKVTERGLVEVDKQGRSNVPNIFAIGDIVPGVPLAHKASYEAKIAAE
                     AIAGEKAENDYTALPAVVFSDPELATVGLTEKEAKEKGFDVKAAKFPFGGNGRALSLD
                     APEGFVRLVTRKEDGLVIGAQVAGMNASDIISEIGLAIESGITAEDIALTIHAHPSLG
                     ELTMEAAELALGRPIHM"
     gene            5765..6076
                     /locus_tag="U0280_001989"
     CDS             5765..6076
                     /locus_tag="U0280_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271917.1"
                     /translation="MEKQTATWKKALFWFAYVVAGICFLLTIVAFIVGFIHHMHDTGG
                     WRSVIQILETPITGFVKMTGGYIGKGILEVIILIIVSYVLPIFFCFATHYLKVKRREM
                     A"
     gene            6205..7158
                     /locus_tag="U0280_001990"
     CDS             6205..7158
                     /locus_tag="U0280_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEM2271918.1"
                     /translation="MPSKKKKIVVIGRSNLQNLYIHTVLFKKIPAEIYLIDDQAKTSV
                     QDFDYASYYHADATIHAGTFNECRNADIVVFFQEEMSNQLVSKEDNVTLIKEKVKKMM
                     ASGFRGIVLVATAESNVVAALIKRFSGLPVNQIITLGTMLATSYFQVEIAKLFKISPK
                     NVHGYIIGDNAEDVIPVWSRAFLGGKPILSYLAEEQKRISAEDLQNLTKMITKIPDFP
                     FENKDGCSFRFSTVTVLAELTEVVLRDEARVITVGVEVKDAYGLENPVFISVPAVIGA
                     EGVRELLELHLSDDEQKELKQIATKTTEKLEELQLNKGGIS"
     gene            7158..7430
                     /locus_tag="U0280_001991"
     CDS             7158..7430
                     /locus_tag="U0280_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HEM2271919.1"
                     /translation="MEYSYPLNPDWTTEEMTIVVQFLEAIERAYEKGIDTLELKEKYR
                     AFKQVVPAKGEEKRIGIDFEKASGYSAYKVMQLVKNATTSKIKMQP"
     gene            7452..7982
                     /locus_tag="U0280_001992"
     CDS             7452..7982
                     /locus_tag="U0280_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEM2271920.1"
                     /translation="MDISQIKAEVVTPETGIHVGDQTAPVKVMSFVNLRCPFCREWNE
                     KSKDVLTEYIQAGKIELIIKPFDKEKESLQRGNVTHRYLDYSKPEETRETINKIYSKQ
                     DEWGSLTLPEVATYMESELGLTEQDNKAASEKIVAEANAANVVFVPTVIVGEHIFDEH
                     ISPEELRSLLDGELAK"
     gene            complement(8040..>8591)
                     /locus_tag="U0280_001993"
     CDS             complement(8040..>8591)
                     /locus_tag="U0280_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2271921.1"
                     /translation="RFALQILYMISTTFLRHLKRLNRQTDEIEKELHESMKNKQLYDL
                     MGIEKSLVYFVTALKSNKVVLDKMMRQNIVKMYEEDQDLLEDVIIENRQGIEMAEVHS
                     NILSGMMDAYASIISNNMNIVMKFLTSFTIILTIPTMVFSFYGMNVKLPFMNTPMAWM
                     LTLGFAFGIAGALAIVFWRRKFF"
BASE COUNT         2920 a         1574 c         1744 g         2353 t
ORIGIN      
        1 gattttttat gaaacattgt gaaagaatga atattttttc acaaactctc ttaaaaccca
       61 tgttttcaat gaggattttg tggtaataac tggagaggct acgtaattgg ttaataggaa
      121 tttagaaaaa agcttccgga atctgcttct ttctatagaa tgacttttct ttttactacg
      181 ctattataat taatacacaa tcaggatggc agttttaaaa gaatccattt agatgggtaa
      241 atgaccggac gagcgttaca taaaacgcat acctaactaa tgaagaattt gaaactgtac
      301 aatgtgaatg acgaaagggt ggatacgaaa tggcttctaa aacaaagaag gctattatcg
      361 acgtaaagaa acaatttgag gctgttcata aacaatttga attagttcaa attttgaatg
      421 aaaaaggaga aatcgttaat ccagatttaa tgccggattt aactgatgac gagttagtag
      481 aattaatgac tcgcatggtt tggactcgtg tacttgacca acgttctatc tcacttaacc
      541 gtcaaggacg tctaggtttc tacgctccaa ctgctggaca agaagcttcc caacttgcaa
      601 gccactacgc acttgaaaaa catgactata ttcttccggg ttaccgtgat gtgccacaac
      661 ttatctggca cggacttcca cttacaaaag cgttcttgtt ctctcgtgga cactttgtag
      721 gtaaccaatt ccctgaagat ttaaatgtat tatcaccaca aatcatcatc ggtgcacaaa
      781 tcgtgcaagc tgccggtgtt gctctaggac ttaaaaaacg taaaaaagat gctgttgtaa
      841 tcacttatac aggtgatggt ggttcttccc aaggtgactt ctatgaagga atgaactttg
      901 caggtgctta ccatgctcca gcaatcttcg tagtacaaaa taacaaattc gcgatttcta
      961 cacctcgtga aaaacaatca gctgctgaaa cattagctca aaaagcagtt gcagccggaa
     1021 tcccaggcgt acaagtagac ggaatggatc cacttgcagt atatgctgta actaaattcg
     1081 ctcgtgaacg tgcagttgct ggtgaaggcc caacattaat cgaaacaatg acttaccgtt
     1141 atggtccaca tacactttct ggtgatgatc caactcgtta ccgtacaaaa gaacttgacg
     1201 gagaatggga acttaaagac ccaatcgttc gcttccgtac tttcttagaa ggtaaaggcc
     1261 tttggaacga agaaaaagaa aatgctgtta tcgatcaagc aaaagaagaa atcaaagtag
     1321 caattaaaga agcagatgct acaccaaaac aaactgtaac tgatcttctt aaaaatatgt
     1381 acgaaacacc aactgctcct atcaaagagc aactggcaat ctatgaagcg aaggagtcga
     1441 aataatcatg gcgcaaaaaa caatgattca agcgattaca gatgcgcttg cagtagaact
     1501 tgaaaaagac gaaaacgtat tagtttttgg ggaagacgtt ggtaaaaacg gcggagtatt
     1561 ccgtgcaaca gaaggattac aagaaaaatt tggcgaagat cgtgtattcg atactcctct
     1621 agcagaatct ggtatcggtg gtcttgcgat tggtcttgca cttgaaggtt tccgtccagt
     1681 tccagaaatt caattcttcg gtttcgtatt tgaagtaatg gattccgttg ctggtcaaat
     1741 ggctcgtatg cgttatcgta caggcggaac tcgtactgct ccaattacaa ttcgcgcacc
     1801 ttttggtggt ggagttcata caccagaaat gcatgcggat aacttagaag gattaatggc
     1861 tcaatcacct ggtttaaaag tggtaattcc atccactcca tatgatgcaa aaggtctttt
     1921 aatctcagct attcgtgata acgatccagt tatcttctta gaacatatga aattataccg
     1981 ttctttccgt gaagaagttc cagaaggcga atacacagta gaaattggta aagcagctgt
     2041 tcgtcgtgaa ggtacggatg tttctatcat cacttacggt gcaatggtac aagaatcaat
     2101 gaaagcagca gaagcgcttg aaaaagatgg cgtatctgta gaagttatcg atttacgtac
     2161 aattagccca attgatgtgg aaacaatcat tgcttccgtt aagaaaacaa accgcgcagt
     2221 tgtagttcaa gaagcgcaaa aacaagcagg tattgcagct aatatcgttg ctgaaatcaa
     2281 cgaccatgca atcctttctc ttgaagctcc agttatgcgt gttgctgctc cagatagcgt
     2341 attcccgttc tctcaagcag aaacagtttg gttacctaac cacaacgata tcatcgaacg
     2401 tgtaaaagaa gttattgcat tttaatttat aatgaccgtt ttaaaactta tggggagttt
     2461 tagaagggga aagaaatatt tttatactaa ggttcagttt atctgaacct tagaaattac
     2521 aggaggctta ataaaatggc atattcattt aaattaccgg atatcggtga aggtatccat
     2581 gaaggtgaaa tcgttaaatg gtttgtacaa ccaggcgata agattgaaga agatgaatcc
     2641 ctatttgaag tacaaaacga caaatcagtg gaagaaatca cttctccagt ttcaggaacg
     2701 attaaagaaa tcaaagttgc agaaggtaca gttgctacag ttggacaagt actagtaaca
     2761 tttgatggcg tagaaggtca cgaagacgac gccgaagaag aaagcgcagc accaaaagca
     2821 gaatccacag aatcaactcc tgcacccgca caagctagcg gaaaaggaat ttttgaattc
     2881 aaattaccag atattggtga aggaattcat gaaggtgaaa ttgttaaatg gtttattcaa
     2941 ccgggcgata aagtagaaga agatcagtcc atttttgaag tacaaaacga caaatctgtc
     3001 gaagaaatta cttctccagt agatggaact gttaaagata ttttagttag cgaaggaaca
     3061 gtagcaacag ttggtcaagt attagtaaca ttcgaaggcg attttgaagg agaagctagt
     3121 catgaatcta ctccagaatc tccagcagaa gaagctgaac ttacaaacaa cgatgcaact
     3181 tccgctccag ttacaggtgg aaacggaacg ccatcatcta aaaaagatcc taatggcctt
     3241 gtaattgcaa tgccttctgt acgtaaatat gcgcgtgaaa aaggcgttaa tatcgctgaa
     3301 gtagcaggct ctggaaaaaa taaccgcgta gttaaagctg atattgatgc tttcctaaac
     3361 ggcgaacaac cagctgcatc aacaactact gctcaaacag aagaaaaagc agcagcacca
     3421 aaggcagaaa aagcagcagc aaaacaacca gttgcaagct ccgatgctta cccagaaaca
     3481 cgcgaaaaat taacaccaac tcgtcgtgcg attgcaaaag caatggtaaa ttcaaaacat
     3541 acagctccac acgttacttt aatggacgaa atcgaagtaa ctgcacttat ggctcaccgc
     3601 aaacgtttca aagaagtggc tgccgaaaaa ggtatcaaac taactttctt accttatatg
     3661 gtgaaagctc ttgttgcaac gcttcgtgac ttcccagtgc ttaacacaac tttagatgat
     3721 gcgacagaag aacttgttta caaacattac ttcaacgttg gtatcgcagc agatacagac
     3781 cacggtttat atgtaccagt aattaaaaat gctgataaaa aatccgtatt ccaaatttct
     3841 gatgaaatca acgaactagc tggaaaagca cgtgatggta aattaactgc tgacgaaatg
     3901 cgccacggtt ccgcaactat ttctaatatc ggttctgccg gcggacaatg gttcactcca
     3961 gtaattaatt acccagaagt tgctattcta ggtgttggtc gtattgctca aaaacctatc
     4021 gtaaaagatg gcgaaattgt agcagcacca gtacttgctc tttccttgag ctttgaccac
     4081 cgtgtaattg acggcgcaac tgctcaaaaa gcaatgaaca atattaaacg tttattaaac
     4141 gatccagaat tattactaat ggaggtgtaa caaaatggta gtaggcgatt ttccagaaga
     4201 aagagacacc atagtcatcg gtgcaggccc aggtgggtat gtagccgcaa tccgagctgc
     4261 acaactcgga caaaaagtta ccattattga aaaagaatat tacggcggtg tgtgcttaaa
     4321 cgtgggatgt attccttcca aagcacttat cacaatcggt caccgtttta aagaagctgg
     4381 acactctgat aacatgggta ttacagcaga caacgtgaac ttagatttca caaaagcaca
     4441 agaatggaaa ggcggcgtag ttaacaagct tacatcaggt gttaaaggcc ttcttaagaa
     4501 aaataaagtt gaaatgttag aaggagaagc gttcttcgtg gatgatcatt ccttacgtgt
     4561 gattcaccct gactccgctc aaacttatac atttaacaac gtaatcattg caacaggatc
     4621 tcgtccaatc gaaatcccag gtttcaaata tggtaaacgt gtattaagct caactggtgc
     4681 acttgcacta acagaagttc cgaaaaaatt agtcgtaatt ggcggcggat atatcggaac
     4741 agaactaggt ggagcattcg ctaaccttgg tacagaacta actatccttg aaggtggtcc
     4801 agaaatctta ccaacatacg aaaaagacat ggtttcccta gttaaacgta atctgaaaag
     4861 caaaaacgtt gaaatggtta ctaaagcact tgcaaaatct gctgaagaaa ctgaaaacgg
     4921 cgttaaagta acgtatgaag ctaacggtga aactaaaact atcgaagctg attatgtttt
     4981 agtgacagta ggtcgtcgcc caaatacaga cgaaatcggt ttagaacaag ctggcgttaa
     5041 agtaacagaa cgcggtttag tagaagttga caaacaaggt cgctcgaacg ttcctaacat
     5101 tttcgcaatt ggtgacatcg ttcctggtgt tcctctagct cacaaagcta gctatgaagc
     5161 aaaaatcgct gctgaagcaa ttgctggcga aaaagcagaa aacgattata cagcacttcc
     5221 agctgttgtt ttcagtgacc cagaacttgc aacagttggt ttaacagaaa aagaagcaaa
     5281 agaaaaaggc tttgatgtaa aagctgctaa attcccattc ggcggtaacg gtcgtgcgct
     5341 ttctttagat gcacctgaag gatttgttcg tctagttact cgtaaagaag atggcctagt
     5401 tatcggtgca caagttgccg gaatgaacgc ttctgatatt atttcagaaa tcggcttagc
     5461 aatcgaatca ggtattacag ctgaagacat cgcgcttact atccatgctc atccatccct
     5521 tggagagctt acaatggaag cagctgaact tgctttaggt cgtccaattc acatgtaatc
     5581 aacttaaagc ggaggtatcc tttatggata tttccgcttt ttatctatat aaattagtgc
     5641 gtgatttcac aaaaactctt ttagttcatt ttttgaaata tttaaagtat ccgttttaga
     5701 aaaaaaggag tataatgtaa caagtgaatg taacaagtca aatctaattg aatcaggtga
     5761 aaaaatggag aaacaaacag caacttggaa gaaagctcta ttttggtttg cgtatgtagt
     5821 agcaggaatt tgttttttat taacgattgt ggcctttatt gtaggattta ttcatcacat
     5881 gcatgataca ggtggatggc gttccgttat tcaaattctc gaaactccaa tcacaggctt
     5941 tgtcaaaatg actggtggct acatcggtaa aggaatctta gaagtaatta ttctgattat
     6001 cgttagttat gtattaccga ttttcttctg ttttgcaacg cattatttaa aagtaaaacg
     6061 acgtgaaatg gcttaaaata agattatttt gtaaaaagca aagcgaatga gcattgcttt
     6121 ttatttatgt ggtcaagtta ttttattttt gcctcggaag catgctaaaa taacaataag
     6181 agacttgatg aggaggagat gcatatgcca tctaagaaga aaaaaattgt cgttatcggc
     6241 agaagtaatc tacaaaatct ctacattcat acagttcttt ttaaaaaaat accagccgag
     6301 atttacttaa tagacgatca agctaaaaca agcgtacaag attttgacta tgcgagttat
     6361 tatcatgcag atgcgaccat tcacgcagga accttcaacg agtgtcgcaa cgctgatata
     6421 gtcgtctttt ttcaagaaga aatgtccaat caactcgttt caaaagaaga caatgtcacg
     6481 ctaatcaaag aaaaagtgaa gaaaatgatg gcgagcggtt tccgaggaat tgtcttagtg
     6541 gcgacagctg aaagtaatgt cgttgccgcg ttaattaaac gtttctccgg cttacctgta
     6601 aatcaaatta ttacgcttgg caccatgctt gcgacgtctt attttcaagt ggaaattgct
     6661 aaattattta aaattagccc taaaaatgta cacggatata ttattggcga taatgcagaa
     6721 gatgtcattc ctgtatggag tagagccttt cttggaggca aaccaatttt aagttattta
     6781 gctgaagagc aaaaaagaat ctcagcagag gatttacaaa atttaacaaa aatgattact
     6841 aaaattccag attttccttt tgaaaataaa gatggttgtt cttttcgatt tagcacggta
     6901 actgttcttg ctgaattaac cgaagttgtt ttgcgcgacg aagcaagagt tatcacagtt
     6961 ggtgttgaag tgaaagacgc atatggttta gaaaatcctg tcttcattag tgttccagct
     7021 gtcattggcg cagaaggagt cagagaacta cttgaattac atctctcaga cgatgaacaa
     7081 aaagaattaa aacaaatcgc cacaaaaacc accgagaaat tggaagaatt gcaacttaac
     7141 aaaggaggga ttagttaatg gaatacagtt atccactaaa tccagactgg acaaccgaag
     7201 aaatgacgat tgttgtgcaa tttttagaag ctattgagcg agcgtatgaa aagggcatag
     7261 atacgcttga gctcaaagaa aaatatcgag cattcaaaca agtagtccct gccaaaggag
     7321 aagaaaaacg gattggtatc gactttgaaa aagcaagtgg ctattcggcc tataaagtca
     7381 tgcaacttgt aaaaaacgca actactagta aaataaaaat gcaaccataa ttaagaggag
     7441 gaattttttt catggatatt agccaaatta aagcagaagt agtaacacca gaaacaggga
     7501 tacacgtagg agatcaaact gcgccagtaa aggtaatgtc attcgttaac ttacgttgcc
     7561 cattttgtag agaatggaat gaaaaatcca aagacgttct aacggaatat attcaagcag
     7621 ggaaaattga attaatcatt aaaccatttg ataaagaaaa agaatcgtta caacgaggaa
     7681 atgtaacgca tcgctactta gattattcca aaccggaaga aacccgtgaa acaatcaata
     7741 aaatttatag taagcaagat gaatggggta gcctaacgct tcctgaagta gctacttata
     7801 tggaatccga gttaggctta acagagcaag acaataaagc tgcatcagaa aaaattgttg
     7861 ctgaggcaaa cgcggcaaat gttgtttttg taccgactgt tattgtgggt gaacatattt
     7921 ttgatgagca cattagtcct gaagaattac gttcgttact agacggcgaa ttagctaaat
     7981 aaaaaaagcg aatgtattgg cctaaaattt taggtaatac attcgctttt tgtttatttt
     8041 taaaagaatt tcctccgcca gaatacaatc gcaagcgctc cggcaatccc gaatgcaaaa
     8101 ccgagcgtca gcatccaagc cattggtgta ttcataaacg gtaatttcac gttcattccg
     8161 taaaaactaa acaccatcgt tggaatcgtc aagatgatgg taaaagaagt aaggaatttc
     8221 atcacgatat tcatattgtt cgagataatt gaagcatagg catccatcat cccgctcaaa
     8281 atattcgagt ggacttccgc catttcaata ccttggcgat tttcaataat aacatcttct
     8341 aataagtctt gatcttcttc gtacatttta acaatatttt gacgcatcat tttatcaagt
     8401 acgactttat tcgatttaag ggcggttaca aagtaaacta aacttttttc aatccccatt
     8461 aaatcataaa gttgtttatt tttcatagat tcatgtagtt ctttttcgat ttcgtctgtt
     8521 tgacggttca agcgttttaa gtgacgcaag aaagtagtgg aaatcatgta taagatttgc
     8581 aatgcaaacc g
//
LOCUS       DASDXX010000116         8580 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.116, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000116 DASDXX010000000
VERSION     DASDXX010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8580
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.116"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            12..389
                     /gene="dhaM"
                     /locus_tag="U0280_001994"
     CDS             12..389
                     /gene="dhaM"
                     /locus_tag="U0280_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM2271922.1"
                     /translation="MISIVLVSHSQKITEGLQEMIVEMVGDTVHIISSGGTGDGRLGT
                     NAIMIADNIATCTNSEHIYIFCDIGSAILSAETALELLETDLLEKTTIIDAPLVEGAF
                     TAAVQSLVNPSKEAILQELTNVH"
     gene            474..905
                     /locus_tag="U0280_001995"
     CDS             474..905
                     /locus_tag="U0280_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271923.1"
                     /translation="MKFFRGMIGFCIAGMIVMSVWTPLAENYGIFGGYLAAFIIIGPM
                     WFMNHYVGLIENDEDAAFVDMAVGIGICGIMRDVFMQGGGELVSSLPTIGLVAIGAVL
                     AGIVAAAIEKDMAKKQEAKQEKTEPGMNMKEEERLNENQLV"
     gene            921..1262
                     /locus_tag="U0280_001996"
     CDS             921..1262
                     /locus_tag="U0280_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271924.1"
                     /translation="MSIGIALATIAGGFLFPFAIRMMWGKMVDEWGAIGGWMAAAFIV
                     GTVWTINHGIPKSMIYQSGTVWVDMAVAAGIGVFTASLLTGGKFSKSIVNLAAAVVGG
                     VLGGFLLSLFL"
     gene            1284..2279
                     /locus_tag="U0280_001997"
     CDS             1284..2279
                     /locus_tag="U0280_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM2271925.1"
                     /translation="MRRLVNDGYEAVEEMLAGYVAAQGKYVDFAENDKRVIVSKQMSE
                     EPRVRIIVGGGSGHEPLFLGYVGKDFADAAVVGNINTSPSPEPCYNAVKAVDSGKGCL
                     YMYGNYAGDVMNFDMGAEMAADDGIRVETVLVTDDIYSAENVEDRRGVAGDLIVFKAA
                     ASAAAKGLDLDAVKQAAEKANANTFSMGVALSSSTLPVTGKAIFEMKEGEMEVGMGIH
                     GEPGIKRTSIEPADKVVDQIMGYLIEEMKLTADEEVHVLINGLGGLPVMDQYICYRRV
                     DEILKEKGVHIHNPLVGNYATSMDMIGMSITLVRLDDELKDLLDTPCDTPYFKVD"
     gene            2301..2951
                     /gene="dhaL"
                     /locus_tag="U0280_001998"
     CDS             2301..2951
                     /gene="dhaL"
                     /locus_tag="U0280_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM2271926.1"
                     /translation="MSELVMDSAFFGHVLQDMGALIEKERDYLTGLDSDIGDGDHGIN
                     LSIGFREVNKQLDELLTASPDIATLLKKSGMILLGKVGGASGPLYGSFFMKCGADVPG
                     KTEVNFDELCGMIINGAAAVQHRGKAELGDKTMMDAFLPGVEVLQNRDTNAAPIETFS
                     AFVDAMHAGAQSTIPLIAKKGRALRLGERAIGHLDPGSESSWMLMNVILENLKKAV"
     gene            2955..3719
                     /locus_tag="U0280_001999"
     CDS             2955..3719
                     /locus_tag="U0280_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEM2271927.1"
                     /translation="MRKPLVGINMKNYINTRAQTSEWLEATIPLLKNFSDVDTFIFPS
                     MGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLNANYVEIGHAERKNL
                     FHEKTSEIAKKIKLALDEKITPVVCVGEEVRANDTNELKNALKKQIEALFQTINLAQW
                     ENVVLAYEPEWAIGKASSAETNYIESAHQALREIIRELGGDETLVRIIYGGSVSKENA
                     AEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG"
     gene            3726..4172
                     /gene="rpiB"
                     /locus_tag="U0280_002000"
     CDS             3726..4172
                     /gene="rpiB"
                     /locus_tag="U0280_002000"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2271928.1"
                     /translation="MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPS
                     IAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAH
                     IMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR"
     gene            4197..4961
                     /locus_tag="U0280_002001"
     CDS             4197..4961
                     /locus_tag="U0280_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-threitol dehydrogenase"
                     /protein_id="HEM2271929.1"
                     /translation="MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLL
                     DIKEDVKDVAAKINPSRTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLE
                     KAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATGGGKIVNMASQASVIALDKHVAY
                     CASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGKKAWAGQVGEDMKKLIPAGR
                     FGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK"
     gene            5008..5664
                     /gene="fsa"
                     /locus_tag="U0280_002002"
     CDS             5008..5664
                     /gene="fsa"
                     /locus_tag="U0280_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEM2271930.1"
                     /translation="MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIK
                     EICSIVDGPVSAEVIGLEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGI
                     KTNVTLIFTVSQGLMAAKAGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEI
                     ISASIRHIGHLEEAAEAGAHIATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQKEGN
                     "
     gene            5666..7663
                     /gene="tkt"
                     /locus_tag="U0280_002003"
     CDS             5666..7663
                     /gene="tkt"
                     /locus_tag="U0280_002003"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2271931.1"
                     /translation="MSRIDEQMVNSIRVLSMDMIEKANSGHPGLPMGAAPMAFSLWKN
                     HLKFNPEHPTWFNRDRFVLSAGHGSAMLYSLLHLFGYDLPMSELKNFRQTGSKTPGHP
                     EFGHTVGVDATTGPLGQGFAMGVGMAMAEAHLGAKFNQPEFPVVDHNTYVLCGDGCLM
                     EGISYEAASLAGHLKLGKLVVLYDSNDISLDGDLNESFSEDIELRFRAAGWQTLRVDD
                     GNDLDALDAAIHLAKTEKSRPTLIEVKTVIGYGSPGKAGKSAAHGSPLGEKELKLAKE
                     AYDWQMPPFELPKTVENQKEFYHSKGRASESSWLRTFNAYKQKYPALAESLQQLMDDN
                     LDADWDAELPVFDENADKAVATREVSGIVLQELEKKLPNLFGGAADLASSNKTHLKAS
                     ERFAPGNYAAKNISFGVREFAMGAAVNGMTLHGGVQAFGATFFVFSDYLRSAIRSAAL
                     MGIPSTFIMTHDSIAVGEDGPTHEPIEHLASFRAMPGLHVIRPADGNETVEAYRYAFT
                     QKEQPTMLVLSRQNLPILPNSAAKAQTGLAKGAYILADSPLDKLDIILLASGSEVHLM
                     TAVRDNLAKKGFGARVVSMPSFDLFDKQSPEYKESVLPKAVKNRFAAEMGASYGWHKY
                     LGDTGQILAIDSFGMSGPGDELARRFGFTVENLTELALKQL"
     gene            complement(7783..7971)
                     /locus_tag="U0280_002004"
     CDS             complement(7783..7971)
                     /locus_tag="U0280_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271932.1"
                     /translation="MEERFEKIYTQGKLNIMEIWVDKETGVQYVYHLSGYAGGMSPLL
                     DADGKPLLADLSKLNGAE"
     gene            complement(8015..8083)
                     /locus_tag="U0280_002005"
                     /pseudo
     CDS             complement(8015..8083)
                     /locus_tag="U0280_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463869.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic pyrophosphatase"
     gene            complement(8231..8580)
                     /locus_tag="U0280_002006"
                     /pseudo
     CDS             complement(8231..8580)
                     /locus_tag="U0280_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009924275.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2655 a         1677 c         1891 g         2357 t
ORIGIN      
        1 ggagcaacca aatgataagt attgttttag tatctcacag tcaaaaaatc acagaaggcc
       61 tccaagaaat gattgttgaa atggttggag atacagtaca tattatttct tctggcggaa
      121 ctggcgacgg gcgtcttggc acaaatgcaa tcatgatagc tgataacatc gcgacttgca
      181 ctaattctga acatatttat attttttgcg atattggaag cgctatctta agtgccgaaa
      241 cagcactcga attattagaa actgacctcc ttgaaaaaac aaccatcatc gatgccccac
      301 ttgttgaagg cgcatttact gccgctgttc aatctctcgt taatccatcc aaagaagcta
      361 tcctacaaga actcacaaac gtgcattaaa aacgtaataa aacgcaattt tgtaactggg
      421 aactatgtaa attaattttt acatgacaat actattttcg aaaggagttt attatgaaat
      481 tctttagagg aatgattggt ttttgtatcg caggtatgat tgttatgagt gtttggactc
      541 cacttgccga gaattatggt atttttggag gttatctggc agctttcatt attattggtc
      601 caatgtggtt tatgaatcac tatgttggtt taatcgaaaa tgatgaagac gcagcgtttg
      661 ttgatatggc tgtcggaatt gggatttgcg gaattatgcg tgatgtcttt atgcaaggtg
      721 gtggcgagtt agtaagttcg cttccaacga ttggtcttgt tgcgattgga gcagttctag
      781 ctggaatcgt ggccgcagca attgaaaaag atatggcaaa aaaacaagaa gcaaaacaag
      841 aaaaaacaga acctggcatg aatatgaaag aagaagagcg tttaaacgaa aatcaattag
      901 tctaaaaagg agtgtaaata atgagcattg gtattgcatt agcaacgatt gcaggtggct
      961 ttttattccc ttttgctatt cgaatgatgt ggggaaaaat ggttgatgaa tggggcgcta
     1021 tcggaggttg gatggcagca gcatttatcg ttggtacagt ttggacaatt aatcatggta
     1081 ttccaaaatc aatgatctat caatctggaa cagtttgggt agatatggcg gttgcagctg
     1141 gtattggtgt attcacagct tcccttttaa caggcggtaa attttctaaa tcgatagtca
     1201 atttggcagc agctgtagtt ggcggcgtgc ttggcggatt tttactatca ctattcttat
     1261 aaaaatatga aggaggaaga aaaatgagac gtttagtgaa tgatgggtat gaagcagtag
     1321 aagaaatgtt agctggttat gttgcggcac aagggaaata cgtagatttt gcagaaaatg
     1381 ataagcgagt aatcgtaagc aaacaaatga gcgaagaacc ccgtgtgcgg attattgttg
     1441 gtggcggttc tggtcatgaa ccacttttcc ttggttatgt tgggaaagat ttcgcggatg
     1501 cggcggtagt tgggaacatt aatacttccc cttctccaga accttgttat aacgcagtaa
     1561 aagccgttga tagcggtaaa ggttgtctat atatgtacgg aaattatgct ggcgatgtga
     1621 tgaactttga tatgggcgct gaaatggctg cggacgacgg tattcgcgtt gaaacagtgc
     1681 ttgtaacaga tgatatttac tctgctgaaa atgtagaaga tcgtcgtggt gtggctggtg
     1741 acttaattgt atttaaagca gcggcatctg cagcagcaaa aggacttgac ctagatgcgg
     1801 tgaaacaagc tgctgaaaaa gctaatgcaa atacgttctc gatgggtgtt gcgctttctt
     1861 cttctaccct tcctgtaact ggtaaagcta ttttcgaaat gaaagaaggc gaaatggaag
     1921 ttggtatggg aatccacggt gaaccaggaa tcaaacgtac ttccatcgaa ccagctgata
     1981 aagtggttga tcaaattatg ggctatctta tagaagaaat gaaattaact gcggatgaag
     2041 aagtgcatgt acttattaat ggacttggcg gtttaccagt gatggatcaa tatatttgtt
     2101 atcgccgcgt cgatgaaatt ttgaaagaaa aaggcgtgca tattcataac ccacttgttg
     2161 ggaactacgc gacttcgatg gatatgattg gtatgtcgat tacactggtt cgtttagacg
     2221 atgaactgaa agatctttta gatacaccgt gcgacacacc atatttcaaa gtggactaaa
     2281 ttactactgg aggaataaaa atgagcgaat tagttatgga tagcgctttt ttcggccacg
     2341 ttttacagga catgggagcg ctaattgaaa aagaacgtga ttacttaacc ggactggact
     2401 cggatattgg agacggcgac cacggaatca atcttagtat tggctttcgt gaagtgaata
     2461 aacaattaga cgaattactc actgcttctc ccgatattgc aacgttgctt aaaaaatccg
     2521 gaatgattct ccttggaaaa gttggtggcg catctggccc gctttatggc agtttcttta
     2581 tgaaatgtgg cgctgatgtt cctgggaaaa cggaggttaa cttcgacgag ctttgcggca
     2641 tgattataaa tggggccgct gcggttcaac atcgcggaaa agccgaactt ggtgataaaa
     2701 cgatgatgga cgccttcttg cctggcgtgg aagtgcttca aaatcgagat acaaatgcag
     2761 ctccaatcga aactttttcc gcatttgtag atgctatgca tgctggcgct cagtccacga
     2821 tcccacttat tgctaagaaa ggtcgcgcac taagacttgg cgaacgagca attggtcacc
     2881 ttgatcctgg ctctgaatcg tcttggatgt taatgaatgt cattttagaa aatttaaaaa
     2941 aggcggtctg atttatgcgt aaacccttag ttggaattaa tatgaaaaac tatattaaca
     3001 ctcgggctca gacatctgaa tggttagaag cgactatccc tcttcttaaa aatttttctg
     3061 atgtggatac gtttatcttt ccttctatgg gcacactcga aacgaccgcc aaccttttag
     3121 cggggacatc atttggcttt ggtccacaaa atatggcgcc ggagaaatcc ggcccgctaa
     3181 ctggtgaatt ttcggtggaa tctatcattg atctaaacgc gaactatgtc gaaattggtc
     3241 acgcagaacg caaaaacctt tttcatgaga aaactagtga gatagcgaag aagattaaac
     3301 ttgcattgga cgaaaaaatc actccggttg tctgtgtggg tgaagaagtc cgtgcgaatg
     3361 atacaaatga attaaaaaat gcgctaaaaa aacaaatcga agcgctgttt cagacaatta
     3421 atttagcaca gtgggaaaat gttgttctgg cttatgaacc ggagtgggca attggaaagg
     3481 cgtcttcagc tgagacaaac tacatcgaaa gcgcgcatca agcgctgcgt gaaattattc
     3541 gcgaactagg cggcgatgaa acgctcgtaa gaattattta cggtggctcg gtcagcaaag
     3601 aaaacgccgc agaaattgtc cgtcaaaaaa atgtcgatgg tttattcgtc ggaagatttg
     3661 gccataaacc gcaaaatttt gccgacattg tttctattgt tagcaaaacg aaaggatgag
     3721 ttagtatgaa aatcgcaatt ggttgtgacg aaatgggtta cgaactaaaa caaaccctca
     3781 tcacacgttt aaaggagaaa aatattgagt ttactgattt cggcagtttt gaaaacgaaa
     3841 aagtacttta tccaagtatt gccgaaaaag tagcactaga agttaaaaac aacgattatg
     3901 accgagggat ccttatttgc ggtacaggta ttggaatggc cattacagca aacaaaattc
     3961 acggcattcg cgcagcacaa attcatgatt cttattcagc agaacgcgca agaaaaagta
     4021 acgacgcaca tattatgacc atgggagctc tagtaatcgg gccatccctt gccgtatctc
     4081 tacttgatac atggctggat agcgactttt cgggcggacg ctcccaagca aaagtagatt
     4141 taatggaaga aatcgaccaa aaaaatagat aaaaaattta ttggaggtaa tgaaaaatga
     4201 cttttaaagg ttttgataaa gattttaaca ttacagacaa agtagccgtg gtaactgggg
     4261 cagcaagcgg gattggtaaa gcaatggcag aacttttttc cgaaaaaggc gcttatgttg
     4321 tcttgcttga tattaaagaa gatgtaaaag atgtcgcagc aaaaatcaat ccatcaagaa
     4381 cgctagcact tcaagtcgat attacgaaga aagaaaacat cgaaaaagtc gttgccgaaa
     4441 tcaaaaaagt ctatccaaaa atcgatattt tagccaattc agctggtgtc gcacttctcg
     4501 aaaaagcaga agatttacca gaagagtact gggataaaac aatggaactg aacttaaaag
     4561 gttcgttcct aatggcgcaa attatcggtc gcgaaatgat tgcaactggc ggcggtaaaa
     4621 tcgttaatat ggcctctcaa gcttctgtta ttgcacttga taaacacgtt gcctactgcg
     4681 ctagtaaagc agcgattgtt tctatgacgc aagtgctagc aatggaatgg gcgccttaca
     4741 acattaatgt caatgcgatt tccccaaccg ttatcttgac ggaacttggc aaaaaagctt
     4801 gggcaggtca agtcggcgaa gacatgaaaa aattaattcc agccggtaga tttggttatc
     4861 cagaagaagt tgccgcatgc gccctctttt tagtaagtga cgcagcgagc cttattactg
     4921 gggaaaacct aattatcgac ggtggttata cgattaaata aagtattcag ctttaaagtt
     4981 cagctgagag aatggagcga gtaaataatg aaatttttct tggacacagc aagcgtatcg
     5041 gaaataaaac gaattagcga acttggttta gtggacggtg tgacaaccaa tccaaccatc
     5101 atcgcaaaag aagggcgacc atttgaagaa gtaatcaagg aaatttgttc tatcgtagac
     5161 ggtccagtta gcgcagaagt tatcggcctc gaagcagaca aaatggtaga agaagctcga
     5221 attctagcaa aatgggcgcc aaatgtagta gtaaaaattc ctatgacgga agaaggttta
     5281 aaagcagtcc ataccctcac agctgaaggc attaaaacaa atgttacgct tattttcact
     5341 gtttcccaag gattaatggc tgcaaaagct ggcgcgactt atattagccc gttcttagga
     5401 aggctagatg atattggtac agacggaatg attttaatta aaaacttgaa aaaagtgctt
     5461 gataattatg gtctaaaagc agaaatcatt tcagcaagta tccgccatat cgggcattta
     5521 gaagaagccg ctgaagccgg agcacatatc gcgactatcc caggaagcct tttcccgaaa
     5581 ctttggtctc atcctttgac tgataaaggt attgaaggat ttttaaaaga ttgggaagcg
     5641 ttcagtcaga aagaaggcaa ttaatatgag cagaattgat gaacaaatgg ttaactcgat
     5701 tcgcgtatta tcaatggata tgattgaaaa agcgaactcc ggccatcccg gtttgccgat
     5761 gggagccgca ccaatggctt tctcgctttg gaaaaatcat ttaaaattca atccagaaca
     5821 cccaacttgg tttaaccgcg atcgcttcgt tttgtcagct ggtcacggtt cggcaatgct
     5881 ttatagtttg ctacatctat ttggttatga tttaccaatg agcgagctga aaaacttccg
     5941 ccaaactggt agtaaaacgc ccggtcatcc tgaattcggt catacggttg gtgtcgatgc
     6001 aactaccggt ccacttggtc aaggtttcgc aatgggagtt gggatggcaa tggccgaggc
     6061 tcaccttggc gccaaattta accaacctga attcccggtt gttgaccata atacctacgt
     6121 gctatgcgga gacggctgtt tgatggaagg catttcctac gaagccgcat cccttgctgg
     6181 tcatttaaaa ctgggaaaat tagttgtttt atatgattcg aatgatatct cactggatgg
     6241 cgatttaaac gagtcttttt cagaagacat cgaactcaga ttccgagcag ccggttggca
     6301 aacgctacgt gtggacgacg gaaatgactt agatgcgctt gatgcagcaa tccatctcgc
     6361 aaaaaccgag aaatcccgcc ctactttaat cgaagtgaaa acggtcatcg gttacggtag
     6421 ccctggtaaa gccggaaaat cggcggcaca cggctcccca cttggcgaaa aagaactcaa
     6481 acttgcaaaa gaagcttacg attggcaaat gccacctttt gaattaccaa aaactgtcga
     6541 aaatcagaaa gaattttatc attctaaagg tcgcgcgagt gaaagcagct ggctccggac
     6601 attcaatgct tacaaacaaa aatatccagc actcgcagaa agtttgcaac aattaatgga
     6661 tgataatttg gatgcggatt gggatgcaga acttcctgtc ttcgatgaaa atgcggataa
     6721 agccgttgca acccgtgaag tatcaggaat tgttctacaa gaattggaga aaaaactgcc
     6781 taacctattt ggtggcgcgg ccgatttggc ctcctccaat aaaacccatt taaaagctag
     6841 cgaacggttt gctccaggta actatgccgc caaaaatatc tcattcggcg tccgcgagtt
     6901 cgcaatggga gcagcagtca acggaatgac gcttcacggc ggtgttcaag ctttcggcgc
     6961 aaccttcttc gtattctcgg attatctacg ttccgcgatt cgttcagcag ctttaatggg
     7021 cattccatcc actttcatca tgacccatga ttccatcgca gtcggtgaag acggtccaac
     7081 gcacgaacca atcgagcatc tcgcatcctt ccgcgccatg ccgggacttc acgtcatccg
     7141 accagctgac ggcaacgaaa ccgtcgaagc ataccgctat gcctttactc aaaaagaaca
     7201 accaaccatg ctcgttctta gccgccaaaa cctgccaatt ttaccaaata gcgcagcaaa
     7261 agcgcaaacc ggacttgcaa aaggtgctta catcttagcc gattccccgc ttgataaact
     7321 agatattatc ttactcgctt ctggatccga agtacaccta atgacagctg tcagagataa
     7381 tctcgctaaa aaaggcttcg gagcacgcgt agtcagcatg ccaagctttg atttattcga
     7441 caaacaaagc cctgaatata aagagtccgt tttaccaaaa gcagtgaaaa atcgcttcgc
     7501 cgcagaaatg ggcgcatcat acggctggca caaatacctc ggcgacacag gccaaatcct
     7561 cgcgattgat tcgtttggta tgtctggccc gggagatgag ctagcaagac gatttggctt
     7621 tactgtagag aacttgacgg agcttgcgtt gaagcagttg taggtatgga ataaactttt
     7681 taacagtaac caatcaagta ctcgggcata aaaaagcagg cattctctat ttagaaagaa
     7741 gagaatgcct gtatttattt gactagaaat caatttccca ctttactcag cgccattaag
     7801 cttagataaa tcagcaagta gcggtttccc atctgcatcc aaaagtggtg acattccacc
     7861 cgcataacca gacaaatggt aaacatattg cacaccggtt tctttatcaa cccaaatttc
     7921 cataatgttg agttttcctt gggtataaat tttttcaaat ctttcttcca ttgttttccg
     7981 cctcctgttt taaggttgca cgcattattc caccctaaat caatttaatt tccgaatcaa
     8041 aatattgctc aataaaatgt actttctctc taatttcctc tatttaaagt atcctgtttt
     8101 aaccaactta aagcctactt ctataaattt aaatttttaa tatcaacaat ttctggcatt
     8161 cacttaattg taggcaattc ctttttcaaa gagcacatag aatttacacc taattccata
     8221 gactaagaaa ctatttcccc aataaataat ctagctcttc atctgtccat tgttgatgaa
     8281 tcaatccctt tatctcatca gataatcgta aaacctcttt ccattctggc gttgttctca
     8341 atgcttttac cacagaattc ctccatcaag ttcaaaaagt ttagtttgca gctgcttgct
     8401 tagtaaagaa agccctctat caattatgtc attatccacc aacaattccc tagtatatgg
     8461 actcaaagca gctggataat caattgctaa ctcttcaaat atttcatatt caatttcttc
     8521 gtcggataaa ttaattgtat gcaatcctaa catacatagc gaagaaaggt aatattcaaa
//
LOCUS       DASDXX010000117         8569 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.117, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000117 DASDXX010000000
VERSION     DASDXX010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8569
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.117"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(4..750)
                     /gene="fabL"
                     /locus_tag="U0280_002007"
     CDS             complement(4..750)
                     /gene="fabL"
                     /locus_tag="U0280_002007"
                     /EC_number="1.3.1.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabL"
                     /protein_id="HEM2271933.1"
                     /translation="MNRVALVTGSSRGLGREIAIALANEGYDIAVNFSRNRKKAEEVQ
                     QEIEQLGRKCVIFKANVGDVEKIRDLFKAVDEEFGRLDIFINNAASGVLRPLMELEES
                     HWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAVE
                     SLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAISKTPAGRMIEPNDL
                     VNAVLFLASEKADMIRGQTILVDGGRTLLV"
     gene            complement(754..1851)
                     /gene="mutY"
                     /locus_tag="U0280_002008"
     CDS             complement(754..1851)
                     /gene="mutY"
                     /locus_tag="U0280_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEM2271934.1"
                     /translation="MRKMKRLTWDETKITAFQEALVSWYEANKRVLPWRENTDPYRIW
                     VSEIMLQQTKVDTVIPYFNRFMTQFPTMEDFVQADEADILKAWEGLGYYSRVRNLQTA
                     MKQVMADFSGKVPTDLTTILSLKGVGPYTAGAILSIAYNQAEPAVDGNVMRVIARVLE
                     ISEDIMKVSTRKIFEEVLYQLIDKENPAAFNQGLMEIGALVCTPTKPMCMLCPLQPFC
                     EAHKNGVETNYPVKIKKVKTKTKELLSIIVISEDGKIAIEKRPENGLLANMWQFPTIE
                     ISKKENEEVAKLQFLHNYGLDVLLEDEPIAHIKHVFSHLVWKMDIRVAKLQSAIPNEN
                     WYFATEEEMKRLAFPVPYQKMWQAWKDFKGE"
     gene            2051..3031
                     /locus_tag="U0280_002009"
     CDS             2051..3031
                     /locus_tag="U0280_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEM2271935.1"
                     /translation="MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIP
                     DIDTVLKLKNNADYIRNHRGITHSLPMLAIWPLLISSVLYLLFPAATFIHLLLWTFIA
                     VGLHIFVDIFNAYGTQAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLAT
                     FVTLYVILALYYVARFVTQRMIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYY
                     VGRAFKRNISIYEKFDRLPVPDNEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYV
                     TFTDLRYRSNGHYPFVAVVKLDDDLKIVSSYTGWIFSTEKLYKKLAPVSI"
     gene            complement(3060..3521)
                     /locus_tag="U0280_002010"
     CDS             complement(3060..3521)
                     /locus_tag="U0280_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEM2271936.1"
                     /translation="MKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTI
                     LPGEKHIFWTDIKSYMQEEEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGN
                     IGIAIKNFSNEAVAIEAGERVAQGVFQKYLVADTDIVANESRVGGVGSTGR"
     gene            complement(3533..3766)
                     /locus_tag="U0280_002011"
     CDS             complement(3533..3766)
                     /locus_tag="U0280_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhJ family protein"
                     /protein_id="HEM2271937.1"
                     /translation="MYTYLDELTAELMTKNPHLDKEQALWWIEMLWSDFESSYAKAGY
                     PYRGPEYAADYVRQQIERHGSFLHQVERKDPNK"
     gene            complement(3768..4577)
                     /gene="recX"
                     /locus_tag="U0280_002012"
     CDS             complement(3768..4577)
                     /gene="recX"
                     /locus_tag="U0280_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEM2271938.1"
                     /translation="MKITSISVQQKNKERYNIFIDEKYNFSVDEEVLARYQLMKGKVL
                     TEAEIEEIKQADMVRKGLNKAINFLSHRVRSEKEIRDYLRKQEMEAFAIDEILKKLAD
                     MDYINDLEFAELYTKTQIKTTLKGPRTIERELVEKGLTREIITQVIEEYSDEAQLENA
                     TKQAIKIMKRNNKSAKKMLQQKIITDLIQKGYTSELAKVAATEATSELDVADEAEILQ
                     KQIEKTMRKNKRYKPSIAKQKTITSLMQKGFSYDTIQSYLTENEISFEEEE"
     gene            4675..5577
                     /locus_tag="U0280_002013"
     CDS             4675..5577
                     /locus_tag="U0280_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HEM2271939.1"
                     /translation="MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYI
                     EWLNEDKLPNLEDLPVDVCINFAGAGLMDEKWTYDRKKVIVNSRIEATSALLSIVKKM
                     KSKPKLWINASAIGAYTSSKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRV
                     VYARFGLVLGTDGGSFPVFEKLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQ
                     INGVVNFTAPHPVQEKKFAERLGKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYP
                     EKLMSNHFEFRFETLQEALDDLLD"
     gene            complement(5598..8195)
                     /gene="mprF"
                     /locus_tag="U0280_002014"
     CDS             complement(5598..8195)
                     /gene="mprF"
                     /locus_tag="U0280_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HEM2271940.1"
                     /translation="MKEKLMQAYAWFQKNSTVVKIVFITFVMAFVIFEIINIATGIDY
                     PSLKENLTSQSPEQIFIMFIVGLIAVTPMLLYDYVIVKLLPGKFSPSHVIASGWITNT
                     FTNIGGFGGVLGASLRASFYGKNASHKEILLAISKIALFLVSGLSIYCLVSLATLLIP
                     GFANHFVNYWPWLLAGGLYFPILFTITKWKSKSLFVDLPIKRELTLIIASLLEWGFAF
                     GCFAIIGTLMGEPVDIFKVFPLFVIASVIGIASMVPGGVGTFDVVMILGLSQLGVSQE
                     LALAWMLFYRIFYYIIPFVVGLLFFVQKAGKKVNDFLEGLPLLFLQKVAHRFLVIFVY
                     GSGLLLILSSAVPNAIYHVPFLYKIMPFNFLFTSQITIVAFGFLLLGLARGIECKTKK
                     AYIITVIVLGCAIFNTLARVFSMKQAIFLGIVLLCLFLARNEFYREKLVYTWSKVIMD
                     SIIFIVCLAGYIVIGIYNSPNIKHSKEIPDYLRIASEHLWLVGFVGVFIAVVSLVIIY
                     IYLSTTKEKLGSPFEAVKVREHLAKWGGNEVSHTMFLRDKLLFWAANGEVLFSYRILA
                     DKMVIMGEPTGNMDKMEAAIEEVMMNADRFGYRPVFYEVRGTMIPYLHDHGFDFIKLG
                     EEGFVDVQNFTMSGKKKKGERALMNKLEREGYTFEIIEPPFKHETWTTLRAVSDEWLD
                     GREEKGFSLGFFDTYYLEQAPIAIAKNGEGTVVGFASMMPSYTEEMTSIDLMRYSKEA
                     PSGIMDFLFINLFEKAKEDGFQTFNAGMAPLANVGESKYAFLGERLAGLVYRYSQGFY
                     GFKGLRNFKSKYVTEWEQKFVAFRKRSSIAFTMLQLMILVGKKRPLANSQVVLDFPLE
                     EETKKPDSE"
     gene            complement(8222..>8569)
                     /locus_tag="U0280_002015"
     CDS             complement(8222..>8569)
                     /locus_tag="U0280_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM2271941.1"
                     /translation="TTIENTFQQTLPTMPTIIQILGNVLLLCPLSFFMLYFKITSTAG
                     KTLLVIFLTSCGIELLQFAQTTMITGFESISLPPKRSTDIDDIILNTLSGLIGILLAY
                     AVPSVRKRINKRR"
BASE COUNT         2566 a         1677 c         1496 g         2830 t
ORIGIN      
        1 ttactatact aaaagtgttc tgccgccatc tactaaaata gtttgcccgc gaatcatatc
       61 tgctttttcg ctcgcaagga ataatacggc atttactaag tcattgggct caatcattcg
      121 acccgctggt gttttactta tagcatcttt taacaattct tcacgattgg gaaagtgatt
      181 tagtgcgtct gtttcaatta agccgccaga aacagcatta actgcaatgc caaaaggtgc
      241 aagttcaact gctaaatacc gagtaagtga ttctaccgcc gcttttgaaa cgccaactgt
      301 tgtgtaattt tctaaataac gaatcgagcc aatcgagctt aagctgatga ttttcccgct
      361 ttgatggcgt tgcattaatt tagctgcttc ttgacctgca aacaacagcg cttttgcgtt
      421 aatattcatt gtccaatccc aatgtgattc ctctaactcc atcaatggtc gaaggacacc
      481 acttgctgca ttgttaataa aaatatctaa tcggccgaat tcctcatcta cagctttaaa
      541 taagtctcta attttttcca cgtcaccaac atttgcttta aaaataacgc attttcttcc
      601 taattgttca atttcttgtt gtacttcttc tgcttttttg cgatttctgg aaaaattaac
      661 agcgatatca tagccttcat ttgcaagtgc gatggctatt tctcttccaa gtcctctact
      721 acttcctgtt actaatgcca ctctattcat ttgttattcc cccttaaaat ctttccacgc
      781 ttgccacatt ttttgatatg gtactggaaa agcaagtcgc ttcatttctt cttctgttgc
      841 aaaataccaa ttttcatttg gaattgctga ctgaagtttt gccacacgaa tgtccatttt
      901 ccatactaaa tgagaaaaaa cgtgtttgat atgcgcaatt ggttcgtctt ctagtaaaac
      961 gtctaagcca taattatgta aaaattgtag tttagctact tcctcatttt cttttttcga
     1021 aatttcaata gtaggaaatt gccacatatt tgcaagcaaa ccattttctg gtcgtttctc
     1081 tatggcaatt tttccgtcct ctgaaataac aatgatgctt aatagttctt tggttttcgt
     1141 tttcactttt tttattttta ctggataatt cgtttcaacg ccatttttat gcgcttcgca
     1201 aaacggttgg agcggacaaa gcatacacat tggttttgtt ggtgtacaaa caagcgcacc
     1261 aatttccatt aaaccttggt tgaaagcggc tggattttct ttgtcaatta gttgatataa
     1321 cacttcttca aaaattttcc gggtggacac tttcatgatg tcttcactaa tttctaaaac
     1381 gcgcgcgatg acacgcataa cattgccatc cactgctggt tcagcttggt tgtaggcaat
     1441 actcaagata gctcccgctg tatatggacc tacaccttta agcgataaaa tagtggttaa
     1501 gtcggtagga acttttccag aaaaatcggc catcacttgc ttcatggctg tttggaggtt
     1561 tctgacacga gaataatagc ctaagccttc ccacgctttt aaaatatccg cttcatccgc
     1621 ttggacaaaa tcttccatcg tcggaaattg agtcataaag cgattaaaat aaggaattac
     1681 tgtgtcgact tttgtttgtt gaagcatgat ttctgagacc caaattctgt aaggatcggt
     1741 attttcgcgc cacggtaaga cgcgcttatt cgcttcatac caggaaacga gtgcttcttg
     1801 aaaagcagtt atctttgttt catcccaagt tagtctcttc atttttctca ttttcccctc
     1861 gtaattctaa tagatttcta atgtgtgttg ctccggatgt gtagtataat gtagacaggg
     1921 aataaaatag tatacccatt cttaagccga tttctattat accgaatgct ggcttgattg
     1981 aatagtgttg tgctcttaca ggcagcacca cttgtatttt ttaagaccga ttttagagga
     2041 ggcaaagtca ttggatactg gcacacatgt agtaatggga attgcactcg gagcgttagc
     2101 aaccgtagac ccggtagttg ccggaagttc tcaagctgcc attggtatta tgacagcaac
     2161 aattattggt tcacaaattc cagatattga cactgtacta aaattaaaaa acaacgctga
     2221 ttatattaga aatcaccgag gaataacaca ttccttgccg atgcttgcaa tttggccatt
     2281 acttatttca tctgttttgt atttactttt cccagcagca acatttattc atttactgtt
     2341 atggacgttt atcgcggtgg gattacacat ttttgtagat atttttaatg cttacgggac
     2401 acaagcagtc agaccgttta aagaaacatg ggtcgcattt ggatttatca atacctttga
     2461 ttggttcatt ttcggttctc atgttgtggc tattgcggct tggttgttag gttctcctgt
     2521 attagctaca tttgtaacac tctacgtcat tttagcactt tattatgtgg cgagatttgt
     2581 tacacaacga atgattaaac atgcggttca aaacttaatt ccagattcag aagaaatcat
     2641 tattgcttcc accatccact tcttccagtg gcgtgtggcg gtaacaacca aagatcatta
     2701 ctatgtaggt cgagctttca aacgcaacat ctctatctac gaaaaatttg accgattacc
     2761 tgttcctgat aatgaaatca tccgttctgc gaaaaaagat aaaaatctag ctgcttttat
     2821 ctcattctcc aaagtttaca actggcgcat tgaggaaaag ctagatggga cttatgtaac
     2881 atttaccgat ttacgttatc gtagcaatgg acattatcca tttgtagcag tggtgaaatt
     2941 agatgatgat ttaaaaattg tttcatctta cactggttgg attttctcca cagaaaaatt
     3001 atacaaaaaa ctagcacctg ttagtattta aaaaaagacc cggaatcccg ggtctttttt
     3061 tatctgcctg tacttcctac cccaccaaca cgggattcgt ttgcgacaat atctgtatct
     3121 gcaactaagt atttttgaaa tacgccttga gcaacacgtt cccccgcttc aatagctact
     3181 gcttcattgg agaagttttt aatggcaatc ccaatattgc catcattacc tggattacta
     3241 taataagaag aatcaataat tcctgtaccg ttacatagaa gtaaaccttt ctttatacca
     3301 atggaagaac ggacatagat attcaaaacc tcctcttcct gcatataact tttaatatct
     3361 gtccaaaaaa tgtgtttttc tcctggtaag atggttactg tttcattaga gaagaaatca
     3421 tagccggccg aacctttgtc cccgcgtatt ggtaaagata ttgtttgttc cggaaatttt
     3481 ctgcttgctt catttactac ttcaaatcct cttactttca attcgttcac tcctatttgt
     3541 ttgggtcttt tcgttctact tggtgtaaaa aactgccgtg gcgctcgatt tgctgacgga
     3601 cataatctgc cgcgtactct ggaccacgat acgggtaacc tgctttagca tatgaacttt
     3661 caaaatctga ccaaagcatt tcaatccacc acaaggcttg ctctttatct aaatgcggat
     3721 ttttagtcat taattccgct gttagttcat ctaaatacgt atacaattca ctcttcctcc
     3781 tcgaaactga tttcattttc agttaggtat gattgaattg tatcataaga aaaacctttc
     3841 tgcattagcg atgtgattgt tttttgtttg gcaatgcttg gtttgtagcg tttattttta
     3901 cgcattgttt tttcgatttg cttttgtaaa atttctgctt cgtccgccac atccaattcg
     3961 ctcgttgctt cagtagcggc tactttggct agttcgctcg tatagccttt ttggattaaa
     4021 tccgtgataa ttttttgttg aagcattttt ttggcgcttt tgttatttcg cttcataatt
     4081 tttattgctt gtttggtggc attttctagc tgagcttcat ccgaatattc ttcgataact
     4141 tgagtaatta tttctctagt tagtcctttt tcgactagtt cgcgttcaat ggtccgcgga
     4201 ccttttaggg ttgttttgat ttgcgttttc gtatacagtt ccgcaaattc gagatcatta
     4261 atataatcca tgtcggctaa tttttttaaa atctcgtcaa ttgcaaaagc ttccatttct
     4321 tgctttctta aataatcgcg aatttctttt tccgagcgaa cacggtggga taagaagttg
     4381 atggctttat ttagcccttt tcgaaccata tcagcttgct taatttcttc tatttcggcc
     4441 tcggttagaa ctttaccttt catcagctgg tagcgggcta aaacctcttc gtctacgcta
     4501 aagttgtatt tttcatcaat aaaaatgttg tagcgttctt tgtttttctg ctggacactt
     4561 atggacgtga ttttcataat ccgcctcctt ctcctatcta tcataccgca aaaattggtt
     4621 ttaatactac taaaaaggga ataaactagt taggacaatg aagaggtgat aaaattgcat
     4681 atcttactta caggcgcaac aggttttatt ggtgatcatt tagtgcatga attagaaaaa
     4741 tctgatcacg agctttatat tttaacaaga caaaagctaa aaaaccgcgc aaatgtacac
     4801 tatattgaat ggttaaatga agataaattg ccgaatttag aagatttacc agtggatgtt
     4861 tgtattaatt ttgctggtgc tggtttgatg gatgaaaaat ggacttacga tagaaagaaa
     4921 gtgattgtaa atagccgcat cgaagctact tcagcactct tatcgattgt gaaaaaaatg
     4981 aaatcaaaac caaaattgtg gattaatgca agtgcaattg gagcctacac ttcctccaag
     5041 tcaacgattt atctcgatac agaagaaaat aattacgcag ataacttctt aggaaaaaca
     5101 gtctatgaat gggaaaaaac agcgagtgcg gcaagtgatt tgggtattcg tgttgtttat
     5161 gctcgctttg gtcttgtact tgggactgat ggtggctcgt tccctgtttt cgaaaaatta
     5221 ttccaaactt atacaggggg acgctttggt aacggcagac aatggtattc ttggattcat
     5281 gtggatgatg ttgtggcggc aatcttattt atttttgacc acgaacaaat aaacggtgtt
     5341 gttaatttta cagcccctca tcctgttcaa gaaaagaaat ttgctgaacg ccttggaaaa
     5401 aaaatgcata aaccgtataa aactcctgtg cctaaaaaaa ttattaaatt cattctaggt
     5461 gaacgtgcca tgactatttt ggacagtcaa cgtgcttatc cggaaaaact gatgagtaac
     5521 cattttgaat ttcgctttga aacgttacaa gaagctttag atgacttatt agattgataa
     5581 aaaaccagat tctgatttta ctcagaatct ggtttttttg tttcttcttc aagcgggaaa
     5641 tcaaggacta cttgactatt tgcaagtggt ctttttttac caacaagaat cattaattgt
     5701 aacatggtga aagcaataga acttcttttt ctaaaggcaa caaatttttg ttcccattct
     5761 gtaacatatt tggatttaaa attacgcagt cctttgaagc cgtaaaaacc ttgactatag
     5821 cggtatacca gtccggctaa tcgttcacct aggaaagcat atttactttc tccaacattg
     5881 gcaagcggcg ccataccggc attaaatgtt tggaagccgt cttctttagc tttttcgaat
     5941 agattaatga aaaggaaatc cataatacct gatggtgctt ctttagagta tcgcattagg
     6001 tcaatcgaag tcatctcttc tgtatatgac ggcatcatcg aagcaaatcc aacgacagta
     6061 ccttctccgt ttttagcgat agcaatcgga gcttgttcga gataatacgt atcgaaaaat
     6121 cctaatgaga aacctttttc ttctcttcca tctagccact catcagaaac tgctcgtaaa
     6181 gttgtccaag tctcgtgctt gaatggtggt tctattattt caaaagtata accttctcgt
     6241 tctaatttat tcatgagagc acgctcacct tttttctttt taccactcat tgtaaagttt
     6301 tgaacgtcga caaaaccttc ctctccaagc ttgataaagt caaatccgtg atcatgtaaa
     6361 tatggaatca tcgtgcctcg aacttcatag aaaacaggtc gatagccaaa tctgtcagcg
     6421 ttcatcataa cctcttcaat cgctgcttcc attttgtcca tattcccagt tggttcgccc
     6481 atgatgacca ttttgtccgc caagattcgg taagagaaaa gtacttctcc attagccgcc
     6541 caaaaaagta gtttatctcg taagaacatc gtatgactga cttcatttcc gccccatttc
     6601 gctaaatgtt cacgtacttt gacagcttca aatggagaac ctaatttttc ttttgttgtg
     6661 gataaataaa tataaataat gactaaacta acaacagcaa taaatacgcc aacaaaacca
     6721 actaaccata aatgttctga ggcaatgcgt aaatagtcag gaatttcttt ggaatgtttg
     6781 atatttggtg agttgtaaat accaataaca atgtaacctg ctagacatac gatgaaaata
     6841 atgctatcca taattacttt actccatgta taaactagtt tttctcggta aaattcgttt
     6901 cgagctaaga ataaacataa tagcacaatt cctaaaaaga tcgcctgctt catcgaaaat
     6961 acgcgagcaa gtgtgttgaa aatcgcgcaa cctagaacaa ttactgtaat aatatacgct
     7021 ttctttgttt tacattcaat tcctctcgca agtcccagta gtaaaaagcc aaatgcaacg
     7081 atggtaattt gggaagtgaa taagaaatta aacggcataa ttttgtataa gaaaggcaca
     7141 tggtaaatgg cgtttggaac ggcggaagat aaaatcaaca ataatccgga accgtaaaca
     7201 aaaataacta agaagcgatg agccactttt tgtaaaaata atagcggtaa cccttcaaga
     7261 aagtcattta cttttttacc agctttttgg acgaagaaaa gtaatcccac tacaaaggga
     7321 ataatatagt agaaaattcg gtaaaatagc atccaagcga gcgctaattc ttgagaaacg
     7381 cctaattggc taagtcccag aatcatcacg acgtcaaatg tccctactcc accaggtacc
     7441 atcgaagcaa tcccaattac cgaagcgata acaaataatg ggaacacttt gaagatatcg
     7501 actggttctc ccatcaatgt accaataatc gcgaaacatc caaaagcgaa gccccactcc
     7561 aaaagagagg cgataattaa cgttaattct cttttgatag gtaaatcaac aaaaagtgac
     7621 ttacttttcc atttcgttat tgtaaataag attgggaagt aaagaccacc cgcaagaagc
     7681 catggccagt aattaacaaa atgatttgca aatcctggaa tgagtaaagt ggctaatgat
     7741 actaaacagt aaatcgataa accagatact aaaaataaag caatcttaga aatagcgagt
     7801 aatatttctt tatgagatgc attttttccg taaaaacttg ctcttaaact ggcacctaat
     7861 acgccaccaa aaccaccaat attagtaaat gtattcgtaa tccaaccaga ggcaatcaca
     7921 tgacttgggg aaaactttcc aggcaacaac ttaacgatga cataatcata caatagcatt
     7981 ggagtgacag caattaagcc aacaataaac ataataaata tttgttctgg actttgagaa
     8041 gttaaatttt cttttagcga tggatagtca attcccgtcg caatattaat aatttcaaaa
     8101 ataacaaaag ccatcacaaa agtaataaaa acgattttta cgacggtact atttttttga
     8161 aaccaggcat aggcttgcat taatttttct ttcataacag agtctcctta acgatttcca
     8221 ttcatcttct tttattgatt cgttttctaa cagatggtac agcataagct agtagaatgc
     8281 ctattaatcc acttaacgta tttaaaatga tatcatctat atctgtagaa cgttttggtg
     8341 gtagcgatat actttcaaat cctgtaatca tcgttgtttg cgcaaattga agtagttcga
     8401 tgccgcaaga tgttaagaat atgactaata atgtttttcc cgcagtgctt gttattttaa
     8461 agtaaagcat gaagaaagac agtggacata acaataaaac attccctaaa atttgaataa
     8521 tagtaggcat cgttggtaat gtttgctgaa atgtattttc tatggtggt
//
LOCUS       DASDXX010000118         8565 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.118, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000118 DASDXX010000000
VERSION     DASDXX010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8565
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.118"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            91..1224
                     /gene="nagA"
                     /locus_tag="U0280_002016"
     CDS             91..1224
                     /gene="nagA"
                     /locus_tag="U0280_002016"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM2271942.1"
                     /translation="MTNKVITNATIYTGKGVLENAFVRFDKQILEVGSMADFQADKAE
                     EVIDAKGQKLVPGFIDVHSHGGYSFDAMDADPEALRKQVNGMLNEGITTYFPTTMTQS
                     HENIEKALKVINEVAQTEPVIGGIHLEGPFVSKVFKGAQPEEYIQAPDLELFKKWFDI
                     SGGLIKLVTYAPEHDTSADFENLCFELGVVPSIGHSNDVREHLKTSKATHATHLYNAC
                     HRMTHREPGVPGHVLLERGINAELIVDGIHVHPDMVKLAYQMKGPEHLCIITDSMRAK
                     GMPEGKSELGGQTVIVKDKQARLEDGTLAGSVLTYDDGFRNMIKFTGCSVEEAVLMSS
                     GNQAREFNLTQKGAIEAGKDADFNLLDEDLHITATYSFGKKHS"
     gene            1240..1944
                     /locus_tag="U0280_002017"
     CDS             1240..1944
                     /locus_tag="U0280_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2271943.1"
                     /translation="MQLITTENKLAGSKKALEIIEKGITSGEVNTLGLATGSTPETLY
                     AELVKSDVDTKNVTTTNLDEYVGLAANDPNSYHYYMNELLFSKKAFKESFLPNGEATD
                     AEAECARYEEILSEHPIDIQVLGIGTNGHIGFNEPGTPFDSLTHKVVLTDSTREANKR
                     FFEREEDVPTHAYSMGIKSIMNAKKIILLAFGENKAQAIKETIKGPVDVNCPASVLQN
                     HPDVTVILDNEAASLL"
     gene            1960..2682
                     /locus_tag="U0280_002018"
     CDS             1960..2682
                     /locus_tag="U0280_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2271944.1"
                     /translation="MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFH
                     VSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTR
                     IVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
                     IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGR
                     PFEFTRSQYVGSRFQFVARIKQ"
     gene            2802..3857
                     /locus_tag="U0280_002019"
     CDS             2802..3857
                     /locus_tag="U0280_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM2271945.1"
                     /translation="MSWMIILICFGASVLLTPLIRKIALYFDITDKPDQRRINIKPIP
                     SLGGLAMFISFTIGMFLLPIENEFLWPLLIAAFVMVLTGLLDDIMEFKARYKLIGQVT
                     AAFIIVFWGNISIDFINLPFGGEIHFGVLSIPLTIIWIVAITNAINLIDGLDGLAAGV
                     STIALLTILGMAFIMGDALVIMIASVLIAGTLGFLPYNFNPAKIFMGDTGALFLGFII
                     SVLSVMGFKNVTFISLIVPILILGVPISDTLFAIIRRMVTKQPIAMADKSHLHHCLLR
                     LGFTHRQTVILIYAIAALFSLFAFIFTMSTLWGSMILIGVLLILIEVLIETLGLVGST
                     YRPLLNLFKLTKEEKID"
     gene            3971..4879
                     /locus_tag="U0280_002020"
     CDS             3971..4879
                     /locus_tag="U0280_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM2271946.1"
                     /translation="MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEEL
                     REIVHLAHQEGKKVTVAVNSLMHNEHMEELPGFLEHLADMKVDAVTCGDPGAIMLLSE
                     MAQPIPFIYDAQTFVTSAEQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLV
                     YGPTCIHQSKRKLVTNYERIVELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFA
                     SEDVSLVPYLADLYEAGLKTWKLDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFV
                     NKLTELQPPTRKLDAGFYLKNPDDVK"
     gene            4894..6120
                     /locus_tag="U0280_002021"
     CDS             4894..6120
                     /locus_tag="U0280_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM2271947.1"
                     /translation="MSKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRA
                     GNFSFEEMKEGIAFAHERNAKVYVAANMVAHAGDTEGAGEFFRTLRDIGIDAVIVSDP
                     ALISICFQDAPGLPVHLSTQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKT
                     DVEMEAFIHGAMCISYSGRCTLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLV
                     DTDEEPFSMSAVDLSMIKYIPDMVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYC
                     ADPENYVFDPAWEEELWKVAQRELSTGFFYKEPTEDEQLFGKTRKIPQYAFAAQVLEY
                     DEKTKIATLQQRNNFGVGEEIEFYGPGDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKM
                     PVDKPVKPFYFMRKKK"
     gene            6204..6761
                     /locus_tag="U0280_002022"
     CDS             6204..6761
                     /locus_tag="U0280_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM2271948.1"
                     /translation="MIGWIIAIAVVVILVLIYFGLYNSLVKYRNRVDETWAQIDVQLK
                     RRFDLIPNLVETVKGYAKHEKETLTQVIEARNKMMEVPADNRQGQIEADNMLSGALKS
                     IFALGEAYPDLKANTSFIELQHELTTTENKVAYSRQLYNTTVMTYNTKVQSVPTNIVA
                     KLHNFTERDMLSIPEVERVAPKVEF"
     gene            6784..7698
                     /gene="htpX"
                     /locus_tag="U0280_002023"
     CDS             6784..7698
                     /gene="htpX"
                     /locus_tag="U0280_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HEM2271949.1"
                     /translation="MLFEQIAANKRKTIFIILGFFIFVLMVGAAIGIIVWNNYLNGLI
                     LAAVIGAFYILIMVMSSSSVVMAMNHAKEVTSKDQAPVLWDTVESMAMVAGIPMPKVY
                     IVEDASPNAFATGISPEKGAVAVTRGLLNKLERYELEGVIAHEISHIRNYDIRLSTIA
                     IALVAVIAILSDLAMRMIFWGSLTGGRNNRKSDNNNSGGAQAIIYIVALIFVILAPII
                     ATAIQFALSRNREYLADASAVELTRNPDGLIQALQKISGDSKKMEEVSASSESIYFAS
                     PLKSKKNKPGLFDSHPPISSRIERLENM"
     gene            complement(7737..8555)
                     /gene="yjbH"
                     /locus_tag="U0280_002024"
     CDS             complement(7737..8555)
                     /gene="yjbH"
                     /locus_tag="U0280_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease adaptor protein YjbH"
                     /protein_id="HEM2271950.1"
                     /translation="MINQNLYYQSVANSKPIEIYLFFDPACDDCWNIEANMLRLQMEY
                     GNYFKLRYVLHNNLQTFVCKQKRAGNSNLSLKEQQIGAHLSYISCLAVKAAELQGKKQ
                     GITFLRKIQAAYFLENKDIASEEVLYDIAVSTGLDLSEFKKDLASTVAKRAYIGDQKV
                     AQEMEIHENPTVVFFNKNIEDAGLKLSGLHRYEVYVHVLSELLNDAPQPEERPQMEEY
                     LAKVKVTSSATMADFYGVSEQQIERQMKKWRLQQKVELIDAPDGQAHWKYIGNL"
BASE COUNT         2732 a         1441 c         1820 g         2572 t
ORIGIN      
        1 ttcgggtaaa taggaaaaga taagttgcat tttaatagat acgtgctata ataattggta
       61 tagaccgatt taacaaggag gcaatatgta atgactaata aagtaattac taacgctaca
      121 atttatactg gtaaaggtgt tctagaaaat gctttcgtac gttttgacaa acaaatttta
      181 gaggttggct cgatggctga tttccaagcg gacaaagcag aagaagtaat cgatgccaaa
      241 ggacaaaaac ttgttccagg tttcattgat gttcattccc acggtggtta tagttttgac
      301 gcaatggatg cagatccaga agcacttaga aaacaagtga acggaatgtt aaatgaagga
      361 atcactactt acttcccaac aacgatgaca caatcacatg aaaatattga aaaagcatta
      421 aaagtgatca atgaggttgc tcaaacagaa cctgttattg gtggaattca tttggaaggt
      481 ccatttgttt ctaaagtctt taaaggcgca caaccagaag aatatattca agcacctgac
      541 ttggaacttt tcaaaaagtg gtttgatatt tctggtggtt taattaaatt agtaacatat
      601 gcaccagaac atgatacttc agctgatttt gaaaatttgt gttttgaact aggggttgtt
      661 ccgagtattg gtcactctaa tgatgttcgt gagcacttga aaacaagtaa agcgacacac
      721 gcgacacatt tatataatgc ttgtcaccgt atgacgcacc gtgagccagg cgttccaggt
      781 catgttttac tagaacgcgg tattaatgca gaactaatcg ttgatggcat tcacgttcat
      841 cctgatatgg tgaaattagc ttatcaaatg aaagggccag aacatttatg cattatcact
      901 gactccatgc gagcaaaagg tatgccagaa gggaaatctg aacttggcgg ccaaactgtt
      961 atcgtgaaag ataaacaagc tcgtttagaa gatggaactt tagctggaag tgtactcact
     1021 tatgacgatg gcttccgcaa catgattaaa tttactggat gctcggtaga agaggcagtt
     1081 cttatgtctt ctggaaacca agcacgcgaa tttaatttaa cacaaaaagg tgcaatcgag
     1141 gctggtaagg atgcagattt caacttactt gacgaagatt tacacattac agcaacttat
     1201 tcattcggaa aaaaacattc ttgagaggaa gataataaaa tgcaacttat cacaacagaa
     1261 aataaattag caggatccaa aaaagcatta gaaatcattg aaaaaggaat tacatcaggt
     1321 gaagtaaaca cacttggcct agcaactggt agcacaccag aaacacttta tgcagagctt
     1381 gtaaaaagcg atgttgacac aaaaaatgtc acaacaacga acttagatga atatgtaggt
     1441 cttgcggcaa acgacccaaa cagttatcat tactatatga acgaattgtt attctctaaa
     1501 aaagcattta aagaaagttt cttacctaac ggagaagcga cggatgcaga agcagaatgc
     1561 gcacgttatg aagaaatttt atctgagcac ccaattgata ttcaagtgct tggaattgga
     1621 acaaacggcc atattggttt taacgaacca ggaactcctt ttgattcgtt aacacataaa
     1681 gttgttttaa cagattccac tcgtgaagct aataaacgct ttttcgaaag agaagaagat
     1741 gttccaacac atgcttattc tatgggaatt aaatccatca tgaatgcgaa gaaaattatc
     1801 ctacttgctt ttggtgaaaa caaagcacaa gcaatcaaag aaactattaa aggacctgta
     1861 gatgtgaatt gtcctgcttc tgtacttcaa aatcatccag atgttactgt gattcttgac
     1921 aacgaggcgg cgtcacttct ataagaagag ggcgggaaaa tgatcgataa acaatcagga
     1981 ataccgattt acattcagat tcaaagtgaa attaaaaaga aaatggaaga tggtgtttgg
     2041 aaagttggca cttctattcc agctgaacgt caacttgctg aaatgtttca cgttagccga
     2101 atgacggtaa gacaagccat tcaaggcctc gttgatgata acattttgca aagacgtgtt
     2161 ggtgccggga cctttattgc ggaaaagaaa ctaaccgaac gacttgaagc tgttacgagt
     2221 tttacgaatt tgatgttaca agaggggaaa gttccttcga cgcgaatcgt atcgtatggc
     2281 attcgtccgg caagtacgca agaacaagaa gcgttgcaac tgccagaaaa cagcaatgta
     2341 atgaaaattg aacggattcg ttacggcgac cgtgtgccaa ttctttatga agttgctgcc
     2401 attccagaaa aaattgcttc actgcttaca aaggaagaca ttatggattc cctttataaa
     2461 gcgattgaat taaaacttgg tcaaccaatt ggagaagcgg aacaaatcat ggaagcttct
     2521 ttagtatcag aaaaaattgc gccatatctt gatgtgaaac tcggatcgcc ggttatgaaa
     2581 ctcaggcaga ttacaacgtt agaagacggt cgaccatttg aatttacgcg ttcccagtat
     2641 gtaggtagta gatttcaatt tgtagctagg attaaacaat aaataaaagc ttgaggcgga
     2701 atctgtctgc cccaagcttt tttgcataat gattttcgtt gtctttttgc aaataaaaaa
     2761 gtataatgag atgagtaaaa aatttgcggg gaggactagc catgagctgg atgattatat
     2821 tgatatgttt tggcgcgtcc gtattactta caccgctaat tcgaaaaata gctctatact
     2881 ttgatattac agataaacca gaccaacgtc gtattaatat taaaccaatt ccgagtttag
     2941 gtggactagc aatgtttatc agttttacta tcggaatgtt tttactccca attgaaaacg
     3001 aattcttatg gccgcttctg attgcagcat ttgtcatggt tttgactggg ctattagatg
     3061 atattatgga atttaaagca agatataaat taatcggcca agttaccgct gcctttatta
     3121 ttgtgttttg gggtaacatt agtatcgact ttatcaactt accattcggt ggggaaatcc
     3181 attttggggt gttaagtatc ccactcacaa ttatttggat tgtagccatt acgaacgcta
     3241 taaatctaat tgatggactg gacggtcttg ccgcaggtgt ttcaaccatt gccttactca
     3301 ctattttagg aatggcgttt attatgggag atgcactagt aattatgata gcaagtgtgt
     3361 taatcgctgg gacacttggt ttcttacctt ataattttaa tcctgcaaaa attttcatgg
     3421 gggacactgg cgcgcttttc ttaggtttta ttatttccgt gttatccgtg atgggattca
     3481 aaaatgttac gtttatctct ttaatcgtac caattttaat tttaggtgta ccgatttctg
     3541 atacactttt tgctattata cgacgcatgg taacgaaaca accaatcgcg atggcagata
     3601 agtcgcattt acatcattgt ttattacgac taggcttcac gcatcgtcaa acggttattt
     3661 tgatttatgc cattgccgca ctattttctt tatttgcctt cattttcacg atgtcgacac
     3721 tgtggggttc gatgatttta atcggtgtac tactcatttt aattgaggta ttgattgaga
     3781 cgcttggatt agtagggagc acatatcgcc cattacttaa tttatttaaa ttaaccaaag
     3841 aagaaaaaat agattagaga ttggtcactt agactagtct ctttttttta tgccaaaatt
     3901 cttattgagt aacaagtctt cttgtgatac atttatcaag taacgttttt gtagaaatga
     3961 ggagaaaaac atggaaatca ttgcgacagc agattcaatg aaacaagctg aacaattgct
     4021 tcgcgcgggg gtagacagac tatatgtagg taatagccaa tttggtttaa gattgccgca
     4081 ttcattttct gtcgaagaat tacgtgaaat agttcattta gcacatcaag aaggaaagaa
     4141 agtaactgta gcagtaaatt cgttaatgca taacgaacat atggaagagt taccgggatt
     4201 tttagagcat cttgcagata tgaaagtgga tgcagtaacg tgcggtgatc caggggcaat
     4261 tatgcttttg agtgaaatgg ctcaaccgat tccgtttatt tatgacgccc aaacatttgt
     4321 aactagcgca gaacaaatct cgttttggga aaaacaagga gcgattggtg cggtacttgc
     4381 tcgggaacta acagaaggcg aaatcaaagc cattgcaagt agccttacta tcccagttga
     4441 agttctggtt tatggaccaa catgcattca ccaatcgaaa cgtaaactag taacgaatta
     4501 tgagcgtatt gtcgaactgg aagatgatac atcgaaggaa cgtggtcttt atttacgcga
     4561 acctaatgat gaaacaagtc aattaccaat ctatgaagat gagtctggaa cacatatttt
     4621 tgcttccgaa gatgtttcac ttgtccctta tttggcggac ttatatgagg ctggattgaa
     4681 aacatggaaa ctagatggtg ttcttgcaga atcagagaat tttgttcaaa tcgcatcgct
     4741 gttagttgaa gcgaaagaag ctgttatgaa aggtcaattt gtcgcagagt attttgtgaa
     4801 taaattaacg gaacttcagc ctccaacacg aaaactagac gcaggatttt atttgaaaaa
     4861 tccggatgat gtgaaatagg gggaatagca taaatgagta aaatattaaa aaaaccagaa
     4921 gtgctagctc cggctggcaa cttagaaaaa ttaaaaattg ccattcgcta tggtgcggat
     4981 gctgtatata ttggtggtca ggcttttggt cttcggtcac gagcaggtaa ttttagcttt
     5041 gaagaaatga aagaaggtat cgcttttgcg catgaacgaa atgcaaaagt gtacgttgcg
     5101 gcaaatatgg ttgcgcatgc tggtgataca gaaggtgctg gggaattttt ccgaacatta
     5161 cgcgatattg gtattgatgc agtgattgta tcggatccag cgctcattag catttgtttt
     5221 caagatgcgc cagggttacc agtccactta tctacacaag cctcggcaac aaactataag
     5281 acattagaat tttggaagaa gcaaggtctt gaacgagttg tacttgctcg tgaagttagc
     5341 atgcaagaaa ttcaagaaat cggcgaaaaa acggatgtcg aaatggaagc atttatccat
     5401 ggggcaatgt gtatttctta ttctggtcgt tgtactttat caaatcatat ggctaatcgt
     5461 gatgcgaacc gtggcgggtg tgcgcaaagt tgtcgctgga aatatgactt gtttgaaatt
     5521 gataatggtg tctcgaaaaa tttagtggat actgatgaag aaccgttttc aatgagcgcg
     5581 gttgatttat caatgattaa atacattccg gatatggtaa atgctggtgt ggatagtttg
     5641 aaaatcgaag gacgaatgaa gtccattcat tatgtttcga ctgtcgcaag tgtataccgt
     5701 cgtgccgtag atgcttactg cgcggacccg gaaaattatg tattcgatcc agcttgggaa
     5761 gaagaattat ggaaagttgc acaacgcgaa ctatctacag gatttttcta taaagaacca
     5821 accgaggacg aacaactatt tgggaaaacg cggaaaattc ctcaatatgc ttttgcggcg
     5881 caagtattgg aatatgacga gaaaacgaaa atcgctactt tacagcaacg aaataatttt
     5941 ggtgttggag aagaaattga attttacggg ccaggagata ctggatttaa gcagattgta
     6001 gaagtacttt ggaatgaaga tggtgtagaa attgaccgtg ctccaaatgc aatgatgacc
     6061 attaaaatgc cggtagataa acctgtgaag ccattttact ttatgcggaa gaaaaaataa
     6121 aaatctcatg ctgcagtagg attgtcgtgt actccctaag taaggtataa tggggtaagt
     6181 acatatgaag gaggagatta attatgatag gatggattat tgctatcgct gttgttgtta
     6241 ttttagtatt gatttatttt ggtctataca acagccttgt aaaataccgt aaccgtgtgg
     6301 atgaaacttg ggcgcaaatt gacgtacaat taaaacgtag atttgattta attcctaatt
     6361 tagttgaaac agttaaaggg tatgcaaaac atgaaaaaga aacattaaca caagtaattg
     6421 aagctcgtaa taaaatgatg gaagttcctg ctgacaatcg tcaaggtcaa atcgaagcgg
     6481 acaatatgtt aagtggagcg cttaaatcca tttttgcatt aggagaagct tacccagatt
     6541 taaaagcaaa tacttctttc atcgaattgc aacatgaatt aactactacg gaaaataaag
     6601 tggcttattc tcgccaactt tataatacaa ccgtaatgac ttacaacaca aaagtacaat
     6661 ctgtaccaac aaacatcgtt gcaaaactgc ataactttac agaacgtgac atgctttcta
     6721 ttcctgaagt agaacgcgtt gcaccaaaag tagagtttta agccatgaag gagagcgaaa
     6781 attatgctat ttgaacaaat tgcagcaaat aagcgaaaaa caatttttat tattcttggc
     6841 tttttcattt tcgttcttat ggttggcgct gctataggta taattgtttg gaataactat
     6901 ctgaatgggc tcatactcgc ggcagtgatt ggtgcatttt atattttgat tatggtaatg
     6961 agcagttcat ctgttgtcat ggcgatgaac catgcgaaag aagttacatc caaagatcaa
     7021 gcgccagttt tgtgggatac agtagagagt atggcaatgg ttgctggtat tccgatgcca
     7081 aaagtatata tcgttgaaga tgcaagtccg aacgcatttg cgacggggat ttctcctgaa
     7141 aaaggagccg tggcggttac tagaggattg cttaataaat tagaacgtta tgaacttgag
     7201 ggcgttattg cgcatgaaat ttctcatatt cgtaattatg atattcgatt atcaacgatt
     7261 gccattgcgc tagtagctgt tattgcgatt cttagtgatt tagctatgcg aatgattttc
     7321 tggggaagcc taactggtgg cagaaataat cgtaagagtg acaataataa cagtggcggg
     7381 gcacaagcga ttatctatat cgttgcactc atatttgtta ttttggcgcc tattattgca
     7441 acagctatcc aatttgcttt atctcgtaat agagagtatt tagctgatgc tagtgcggta
     7501 gaattaacca gaaatcctga tggacttatc caagctttac aaaaaatcag cggagattcg
     7561 aaaaaaatgg aagaagttag tgcttctagt gagtccattt actttgcgtc acctctaaag
     7621 tctaaaaaaa ataagccagg tctttttgac tctcatccgc caattagttc gcggattgaa
     7681 cgcttagaaa atatgtaaaa aaaaagaagc aacccaggaa tgggggtgct tcttttttat
     7741 aagtttccga tgtatttcca gtgagcctgg ccatctggag catcgattaa ttctactttt
     7801 tgttggagac gccatttttt catttgacgc tcgatttgtt gttcagaaac accataaaaa
     7861 tctgccatag tagcggaaga agtaactttt acttttgcca agtattcttc catttgcggg
     7921 cgttcttctg gttgtggggc atcatttaaa agctcggata aaacatgcac ataaacttca
     7981 taacgatgaa gcccacttag ttttaatcca gcatcttcta tatttttatt gaaaaagact
     8041 acggtaggat tttcatgaat ttccatttct tgagctactt tttgatcgcc aatataagca
     8101 cgcttggcaa ctgtagaagc tagatctttt ttgaattctg ataaatctag accggtggaa
     8161 acggcgatat cataaagtac ttcttcgcta gcgatatctt tattttcaag gaagtaggct
     8221 gcttgtattt tgcgcaagaa tgtaattcct tgtttttttc cttgtagttc agcggctttg
     8281 actgcaagac aagaaatata ggaaaggtgc gcccctattt gttgttcttt taagcttagg
     8341 ttactatttc ctgcgcgctt ttgtttacat acaaatgtct gcaaattatt atgcagaaca
     8401 tagcgcaatt tgaaatagtt cccgtactcc atttgtaatc ggagcatatt cgcttcaata
     8461 ttccaacagt catcacaagc tggatcaaaa aatagataaa tttcgattgg cttggaattt
     8521 gctactgact gataatataa attttggtta atcatttgct atcac
//
LOCUS       DASDXX010000119         8535 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.119, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000119 DASDXX010000000
VERSION     DASDXX010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8535
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.119"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(27..1112)
                     /locus_tag="U0280_002025"
     CDS             complement(27..1112)
                     /locus_tag="U0280_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-deoxy-7-phosphoheptulonate
                     synthase/chorismate mutase"
                     /protein_id="HEM2271951.1"
                     /translation="MVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSL
                     RFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKK
                     EDTIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSP
                     YDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELL
                     KAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDI
                     SAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDS
                     AQQMDIPEFEEFWNAILASNLVPHKIK"
     gene            complement(1332..1856)
                     /locus_tag="U0280_002026"
     CDS             complement(1332..1856)
                     /locus_tag="U0280_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM2271952.1"
                     /translation="MAEKDGINTKDFLIGGLIGAIVGSAAALLFAPKSGKELREDLNT
                     QVDTIKEKGNQWKDVAYEKGIEISGVAKGTKDKLVDSAGGFVDVVKDKSGKLADTVSK
                     QSKAVKEVVSQNKEENQEAAKQAADAVKNEAKDAADDVEKAADKAKKEAKKAVDEGKD
                     EAKKIASDVKKEVK"
     gene            complement(1878..2333)
                     /locus_tag="U0280_002027"
     CDS             complement(1878..2333)
                     /locus_tag="U0280_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEM2271953.1"
                     /translation="MIVILYIAALIAAIALLVIAIYLGKTLKSTSQTMDEVAKSLEKI
                     TVEVQGITGQSQKLLDKTNTLLEDVNGKVAKVDPVFDAVGDIGTSLLGLSQSVRELAT
                     LATNKVEQNEAKISQAVSISNSILSFREKMKANKAAKEAAKEAAEQSNF"
     gene            2589..3701
                     /locus_tag="U0280_002028"
     CDS             2589..3701
                     /locus_tag="U0280_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M29 family aminopeptidase T"
                     /protein_id="HEM2271954.1"
                     /translation="MRDARIEKLAHNLINYSVKLGAGEKVLIENFGVQKELVMALVEE
                     AYKAGGFPFVSLKEPQIDRAMMLGADSSQYAKIAEFEGNVMKEMDAYIGLRAGDNINE
                     TSDVPADKLKIHGETVGKMHSDIRVKQTKWVVLRYPSSSMAQLAKMSTAGFEDFYFDV
                     CNLDYGKMSDAMDGLVELMNKTDKVHLVGPGTDLTFSIKDIPAIKCAGEMNIPDGEVF
                     TAPVRDSINGTLTYNTPSPYQGFTFENVSFTFKDGKIIEATANDTARINKVLDTDEGA
                     RFVGEFAIGVNPFIHEPMQDILFDEKIEGSFHFTPGQCYDEAFNGNQSAIHWDLVNIQ
                     RADYGGGEIYFDEVLIRKDGIFVLPELEALNPENLV"
     gene            complement(3742..4287)
                     /locus_tag="U0280_002029"
     CDS             complement(3742..4287)
                     /locus_tag="U0280_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEM2271955.1"
                     /translation="MAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFY
                     PMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGRLNY
                     PLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVL
                     QALQTGGLCPINWQPGEKTIV"
     gene            complement(4432..5775)
                     /locus_tag="U0280_002030"
     CDS             complement(4432..5775)
                     /locus_tag="U0280_002030"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEM2271956.1"
                     /translation="MTIYHFVGIKGSGMSALAQILHDKGFQVQGSDVDKYFFTQKALE
                     EKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLPVIRYHKFLGQLIDGYT
                     SIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEYFALEACEYQRHFLA
                     YKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDDAELRKLTLDIPI
                     IYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPTYGDHNVLNALSVIALCD
                     YEGLPVEDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDK
                     KVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHKTKG
                     NHIIKEEHTEELLKYPEAVILFMGAGDVQKFQAAYEKVLDHEVLTEADLKKSAIN"
     gene            complement(6070..8421)
                     /locus_tag="U0280_002031"
     CDS             complement(6070..8421)
                     /locus_tag="U0280_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM2271957.1"
                     /translation="MGWFKDFFFGDMDEEIDTYEDTSSRKVEKKAKQRAPEVVPKSNV
                     TAIKTKERTIRNERPVAYKTVPKQKHMQPVKRQMKTQMVYQYPKGEFRFPLIPDKQKS
                     QPIQPKKQPITKRQAAETQPVKEETRKRPFTATDVPSPVYAFNKRPSKFEFAVTEAEE
                     LSTIQEDLTITPVDLLDSAEAETIAFDTELNRQIEEEIVSVPVTEEVITEQPEVKVTP
                     EPVEQQEPARVSLITEEPAQTKTTTRSKQVESNRQEQLLKSRIPFNVMMVKKDKQALR
                     KEEAQEINGQQPVEVEAEQTNTVREAQVATVSYPTNYEFPSFSLLHPPVSKREDDSWL
                     QMQQEMLDETLENFNVQASVVNRTQGPAVTRFEVQPEKGVKVSKITNLTDDIKLNLAA
                     KDIRIEAPIPGKSTVGIEIPNQTSRPVMLSELMNTEAFQSSTSPLTAALGLDISGTPI
                     ITDLQKMPHGLIAGATGSGKSVCINSLLVSLLYKATPDQLKLLLIDPKMVELAPYNRI
                     PHLVSPVITDAKAATVALKWAVEEMERRYQLFSHTGVRNMEKYNEYASHPDHIGEKLP
                     YILIVIDELADLMMVAPNDVEESISRIAQKARACGIHMIVATQRPSVDVITGLIKANI
                     PTRVSFSVSSQIDSRTILDASGAEKLLGKGDMLFLPSGASKPVRLQGTFVSDEEIDAV
                     VAHVRSQGEADYIFEEQELLVKETAKENTDELFEEACDFVLSQNAASTSLLQRHFRIG
                     YNRAARLMESLENHQIVSGINGSKPRDVIITKDQLAKLRNKES"
BASE COUNT         2390 a         1722 c         1462 g         2961 t
ORIGIN      
        1 ccttggaatc ccaaggtttt ttgatgttac tttattttat gtggtactaa attacttgct
       61 aaaattgcat tccagaattc ttcaaattca ggaatatcca tttgttgtgc agaatccgat
      121 aatgcaactg caggatctgg atgaacttca gccatcacgc catctgcctc gatagctaga
      181 gcagcttttg cgcatggaag taataaatct tttcgaccag tagaatgcgt cacatcaacc
      241 ataactggta aatgagtttc ttttttcaaa attggaacgg cagaaatatc aagtgtattt
      301 cttgtcgctt tttcatatgt gcggatacct cgttcgcata agatgatttt gccatttcct
      361 tgtgacatga tatattcagc agcaccaatg aattcttcga ttgtagcaga taaaccacgt
      421 tttagtaaaa tgggtttgtc cacacggcca gccgctttta gtaattcgaa gttttgcatg
      481 tttcttgcac caatttgaat aacatctaca taatcaagtg caacttcaat atcagccggc
      541 gtaacgattt cactaataac acctaaaccg tattcatcag atacacgttt taaaattttc
      601 agtccttcta aacctaatcc ttggaagtca tatgggctag tacgaggttt aaatgcgccg
      661 ccacgaataa gttttaagcc tttcgcttta atggattcag cgaccgcagc aacctgttca
      721 taagattcca ctgaacatgg accgaaaaca aatactggtt cgccattccc gattggcaat
      781 ccttttactg taactatcgt atcttctttt ttgttttttc tagaaacgag taatgcttta
      841 gagtgatctt cttcttgaag ctctaatccc gctttaaaaa tttctttaaa taatttttga
      901 accgtactat cttcaaaagg tccttcattt gctgcaagaa tcgtgttaag catttctctt
      961 tcacgtaatg gatcaaaacg aagagaacct tgagttcctt taattttgcc aatttcttgt
     1021 accaaattag cgcgtttgct aattaattct agcaaatcaa tatttaattg atccacctgt
     1081 gttctaagtt cctctaaatt tgtattaacc atttaacttc cacccttcta aaaatctgct
     1141 ccaagattat ttctcattat agaggaaaac agataatttg tcacgaatcc acttttatac
     1201 ttaatcgctt ttaagcatta aagtgaataa tgtaaaacta atgttaacat gttttaaatc
     1261 aaattacaag cagataatgt attttttcct aataaaaaaa cagccccgta aggctgtttt
     1321 ttgaactaag tttattttac ttcttttttt acgtcagaag caattttttt cgcttcgtct
     1381 ttgccttcat ctactgcttt ttttgcttct tttttcgctt tgtcagctgc tttttctaca
     1441 tcgtccgcag cgtcttttgc ttcatttttc acagcgtctg ccgcttgttt cgcagcttct
     1501 tggttttctt ctttgttttg tgaaacaact tctttcacgg ctttgctttg tttagaaaca
     1561 gtatctgcta atttaccgga tttgtctttc actacatcta caaatccacc agcagaatca
     1621 actaatttat cttttgttcc tttggctaca ccactgattt cgataccttt ttcataagca
     1681 acatctttcc attggttgcc tttttcttta attgtatcaa cttgtgtatt taagtcctcg
     1741 cgtagttctt tacctgattt aggtgcaaat agaagtgctg cggctgaacc aacgattgca
     1801 ccaattaaac caccgattag aaaatctttt gtattaatac catctttttc tgccatgtta
     1861 aatccctcca aattatatta gaaattagat tgttctgctg cttcttttgc tgcttctttc
     1921 gctgctttat ttgctttcat cttttctcta aaagaaagaa ttgaattgct aattgagaca
     1981 gcttgagaaa tcttcgcttc gttttgctct actttgtttg ttgcgagtgt tgctagttcg
     2041 cgaacagatt gacttaatcc tagtaaagaa gtcccaatgt caccaactgc atcaaaaact
     2101 ggatccactt tcgcaacttt gccatttaca tcttctagaa gtgtattggt cttatcaagc
     2161 aatttttgtg attgtcctgt aatcccttgt acttctactg ttattttttc taacgattta
     2221 gctacctcat ccattgtttg ggaagttgat tttaacgttt ttcccaagta gatggcaata
     2281 actaaaagcg caattgcggc aataagcgct gcaatataca agattactat catctatcca
     2341 cacctccata ttcctttttc tataccctga gtattcccct ctaaaacttt cttctctaat
     2401 gatctatgta caaaatacaa aaaagaaaag gtattagctt cattttagca agtaactgcc
     2461 gaaaaataaa ctaataagaa agaaaccggt taatttgttg tagaaggttg cttttagcgt
     2521 aatttggagt aaaatagata caggctgctt tttgcctatt tttagttaaa atttagggag
     2581 gttacaagat gagagacgca agaatcgaaa aattagcaca taatttgatt aactattccg
     2641 tcaaacttgg cgctggagaa aaagtattaa ttgaaaactt cggtgttcaa aaagaattag
     2701 tgatggcttt agtagaagaa gcatacaaag ctggcggttt cccgttcgtt tccttaaaag
     2761 aaccacaaat tgaccgcgcg atgatgctcg gagctgatag ttcccaatat gcaaaaattg
     2821 ctgaattcga aggcaacgtg atgaaagaaa tggatgctta cataggttta cgtgctggcg
     2881 ataacatcaa tgaaacatcc gatgtcccag cagataaatt gaaaatccac ggagaaacag
     2941 ttggcaaaat gcattctgat attcgtgtga aacaaacaaa atgggttgta cttcgctatc
     3001 caagttcctc catggcgcaa cttgccaaaa tgagcactgc tggttttgaa gatttctact
     3061 ttgacgtgtg taacttagat tacggaaaaa tgagtgacgc aatggatgga ttagtagaac
     3121 taatgaataa aacagataaa gtacacttag ttggaccagg aacagattta acatttagta
     3181 ttaaagatat tccggcaatt aaatgtgctg gcgaaatgaa tatccccgac ggtgaagtat
     3241 ttactgcacc agttcgtgat tctatcaatg gaacacttac ttataacaca ccatctcctt
     3301 accaaggctt tacgttcgaa aatgtatctt tcacgtttaa ggatggaaaa atcatcgaag
     3361 cgactgcgaa tgatacagct cgtattaaca aagtcttaga tacagatgaa ggcgcgcgct
     3421 tcgttggcga attcgctatt ggggttaacc cattcattca cgaaccaatg caagatattc
     3481 tttttgatga aaaaatcgaa ggaagtttcc actttacgcc tggtcaatgt tacgacgaag
     3541 cttttaatgg caaccaatct gctattcact gggatttagt taacattcaa cgtgccgatt
     3601 acggcggcgg cgaaatttac tttgatgaag ttctcattcg taaagatggt attttcgtcc
     3661 ttccagaatt agaagcactt aatccagaaa acttagtata aaaaaaagac gcttaggatt
     3721 aattcctaag cgttttttag tttaaacaat tgttttttca ccgggttgcc agttgattgg
     3781 gcacagtcca cctgtttgaa gagcttgtaa aactcttaaa acttcatcca cttcccgccc
     3841 gatattatta tggtgcacca cttcgtactg gatttcacct tttggattga taatgaaaag
     3901 accgcgcaat gctacgcctt cttcctcaat taatacaccg taatcactag ctacttgatg
     3961 attcgtatcc gcagcgagtg ggtagtttaa tctaccaata ccaccttctt taatcggtgt
     4021 attcgtccat gcaagatgcg agtgaattgt atctgtagaa gcgccaatta tgcgggcatt
     4081 taatgcatca aattcatctg accgagcgga aatagcaaca atttctgtcg gacaaacaaa
     4141 tgtaaagtcc attggataga aaaagagaat cgtccattta tcgtcttcta tatttttttc
     4201 tagacttact ttcccaaaag tctgatttgg cataacagct tccatttcaa atcttggagc
     4261 ttgtgtgcct actaaacgtt ctgccacttt tatccctcca ttaattatgt agttgtattt
     4321 tgtatcacat gatatatttt aatacaccta agaaatactg taaagcttta tttatactaa
     4381 ttacaaacaa gaaaaaagca cgccaacgaa tcggcatgct ttatttagtt attaattaat
     4441 cgcgcttttt ttcaagtcag cttctgtcaa aacttcatga tcaagtactt tttcataagc
     4501 ggcttggaat ttttgaacgt cccctgctcc catgaataaa ataacagctt ctgggtattt
     4561 caaaagttct tctgtatgct cttctttgat aatgtggttt ccttttgttt tgtgcgctaa
     4621 atcagcaatc gttaaattcc ctgttttttc acgcgcggaa ccaaagatat cacaaagata
     4681 cacttcatcc gctaaattca agctgtccgc aaaaccttgt aagaatgtgc gagttcgcgt
     4741 gaatgtatgc ggctgaaaaa cagcaactac ttttttgtca ggatattttt gtctagcagc
     4801 atttactgta gcacggattt ctgatggatg gtgcgcgtaa tcatctacta atacttgatt
     4861 agctttttct gtaatactaa atcttctttt gacaccttcg aaagttttta attccttttt
     4921 cacgtcttcc actggtagac cttcataatc acaaagtgca ataacactta aggcatttaa
     4981 tacattatgg tctccgtaag ttggaatttc aaacgaacct aagaactcgc cgcgatgata
     5041 cacgtcgaat tttgttccag ttgtttcttt gattacattt ttagcttgga attcgttttc
     5101 ctcgccaaaa ccaaagtaaa taatcggtat atctaaagta agcttacgta attcagcatc
     5161 gtcccctaag gcaaatacag cttttttcac ttgtttaccc agtgtttcga atgcgttaaa
     5221 tacatcatcc acgctcttga aatagtctgg atgatcccaa tcaatattcg tcataattgc
     5281 atacgtaggt ttataagcaa ggaaatgacg ttgatattca cacgcttcaa gtgcaaaata
     5341 ttccgctcct tttgtcccgc ttccagtacc atcaccgatt aaataagaag ttggacgaat
     5401 cgcaccaaca acatgcgaaa gtaaaccagt tgtcgacgtt ttaccatgag aaccagttat
     5461 cgcaatactt gtatagccat caattaattg acctaaaaat ttatgatatc gaatcaccgg
     5521 aagcccaagc tccagtgcac gctcaatttc ttcatgtgta tctgggaatg cattcccagc
     5581 aataattgtt aggccttctt gaatattatc agccgaaaaa gtcataatcg gaatttgctt
     5641 ttcttctaat gctttttgtg taaagaaata tttatccaca tcgctgcctt gcacttggaa
     5701 acctttatca tgcaggattt gagcaagtgc actcatccct gaccctttta ttccaacaaa
     5761 atgatagata gtcattattt gaacccccat taatttatct tgaagagggt gcctaaaaaa
     5821 aacatgttaa ctgttaagca ccaagtctta actttgaaaa cagtataaag tctccgtttt
     5881 ctagacatca tcttacgttc taattgtgtt ttatgtttga attctagttg agtcaataat
     5941 tcaccagctt attatatcac tttccatgta aatagaaaaa tctttcagcg aatataagcg
     6001 aaattactca tgaaaatagc cattatttgt aaaactaatt aagtaatatg ttagtttagt
     6061 actacaaaat taagattctt tgtttcgcaa cttagctaat tggtcctttg taataataac
     6121 atctcgcggt ttggaaccat ttatcccaga aacaatttga tgattttcaa gggattccat
     6181 taatctcgcc gctcggttat aaccaattct aaaatgtctt tgcaacaagg atgttgaggc
     6241 agcattttgg cttaaaacaa agtcacacgc ttcttcaaat aattcatcgg tattttcttt
     6301 tgccgtttct tttacaagta attcttgttc ttcaaagata taatcggcct cgccttgact
     6361 ccgaacatga gcaacaactg catcaatctc ttcatcacta acgaaggttc cttgtaaacg
     6421 cactggctta cttgcaccac ttggtaagaa gagcatgtcc ccttttccga gtaatttttc
     6481 tgctccgctt gcatctaaaa tcgttctaga gtcgatttga gaagatacag agaacgaaac
     6541 acgtgtaggg atattcgcct taatgagacc tgtaataacg tctacagatg ggcgctgtgt
     6601 cgctacaatc atatgaatgc cacaagctct tgctttttgt gcgatgcggc taatggattc
     6661 ttctacatca tttggcgcaa ccatcatcaa atcagctaat tcatcaatca caattaaaat
     6721 ataaggtaat ttctccccta tatgatctgg gtgactagcg tattcattat atttttccat
     6781 attcctaacg cctgtatggc taaataattg atagcgacgt tccatttctt ctaccgccca
     6841 ttttaaagcg acagtagctg ctttggcatc cgtaataact ggactcacaa gatgtggtat
     6901 ccggttgtac ggagctaatt cgaccatctt agggtcaatc aaaagtagtt tcaattggtc
     6961 tggcgttgct ttgtaaagta aacttactag caatgaattg atacaaacac ttttccctga
     7021 ccctgtagct ccagcgatta aaccgtgggg cattttttgt aaatcagtaa taattggcgt
     7081 tcccgagata tctagcccga gtgccgctgt gagcggtgat gtagatgact gaaaagcttc
     7141 cgtattcatc aattcagaaa gcattacggg acgacttgtc tgattcggaa tttctatccc
     7201 tactgtactc ttaccaggta tcggcgcctc aatccgtata tctttcgctg ctaaatttaa
     7261 tttaatatca tccgttaaat tagtgatttt gctaacttta acgccttttt caggttgcac
     7321 ttcaaatcta gttactgctg gaccttgtgt acggttaact acactagctt gtacgttgaa
     7381 attttccaag gtttcatcta gcatctcttg ctgcatttgt agccatgagt cgtcttctcg
     7441 tttggagact ggcggatgga gcaaactaaa cgacggaaat tcatagttcg ttgggtaaga
     7501 gactgtcgct acttgcgctt ctcgaacagt attcgtttgt tctgcttcta cctcaactgg
     7561 ttgttgccca tttatttcct gtgcttcttc ttttcgaagt gcttgtttgt ctttctttac
     7621 catcatgaca ttaaatggaa ttctgctttt tagcaattgt tcttgtctat ttgattctac
     7681 ttgtttgctt ctagtagttg ttttcgtttg cgccggctct tccgttataa gggaaacgcg
     7741 tgctggttct tgctgttcta ctggttctgg ggttactttc acttctggtt gctccgtaat
     7801 gacttcttcc gtcactggca ctgacacaat ctcttcttct atttgacgat ttagctctgt
     7861 gtcaaaagca attgtttccg cttctgctga atctaataaa tctactggag taatagttaa
     7921 atcttcttgt attgtactaa gttcttctgc ttctgttaca gcaaactcaa atttacttgg
     7981 tcgtttatta aaggcataaa caggcgaagg tacatccgtc gctgtaaaag gtcgttttct
     8041 tgtttcctct tttactggtt gcgtttctgc cgcttgtctt tttgttattg gttgtttttt
     8101 tggttgaatt ggttggcttt tttgtttatc tggaattaac ggaaaacgaa attcgccttt
     8161 tggatactgg tataccattt gcgttttcat ttgtcgtttc actggttgca tatgtttttg
     8221 ttttggaact gttttgtaag caactggtcg ttcgttcctt atagtacgtt ctttcgtttt
     8281 aattgctgtt acatttgatt ttggcactac ttctggtgct cgttgttttg ctttcttttc
     8341 tacttttcgt gaagacgtat cttcgtatgt atctatttct tcatccatat cgccaaagaa
     8401 aaaatcttta aaccatccca ttcattatca ccctaaattt aattttcttg tttgatttta
     8461 acagacaaaa acaaaataat ctatgacaaa attgtgaatt cgcctttttt cgagccatat
     8521 tcgttataat acctt
//
LOCUS       DASDXX010000120         8514 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.120, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000120 DASDXX010000000
VERSION     DASDXX010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8514
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.120"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..677)
                     /gene="gpmA"
                     /locus_tag="U0280_002032"
     CDS             complement(<1..677)
                     /gene="gpmA"
                     /locus_tag="U0280_002032"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HEM2271958.1"
                     /translation="MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKE
                     AGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAE
                     KYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPAGENLKVTLERVIP
                     YWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGIGDDEIMDLEIPTGVPLVYELNDD
                     LKPVNKY"
     gene            complement(768..3368)
                     /gene="clpB"
                     /locus_tag="U0280_002033"
     CDS             complement(768..3368)
                     /gene="clpB"
                     /locus_tag="U0280_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HEM2271959.1"
                     /translation="MDLQKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDF
                     AKRVYDVAEVDIDALQKTVEDALTKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQKQL
                     DDDFVSTEHLILAVMDQKSNPITMNLKKQHKSKKQIQEAILKIRGGKKVTSQNAEENY
                     EALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIV
                     EGLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQIL
                     LFIDEIHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERR
                     FQKVLVPEPTVEDTVSILRGLKERFEIHHGVNIHDNALVAAASLSNRYITDRFLPDKA
                     IDLVDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEILQREL
                     ADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHGKI
                     PAVEKELLELEAENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLL
                     KLADELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKAL
                     AFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSIVLL
                     DEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEI
                     SPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEI
                     TITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEIDLA
                     DKEFTFKVTE"
     gene            complement(3516..4193)
                     /locus_tag="U0280_002034"
     CDS             complement(3516..4193)
                     /locus_tag="U0280_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEM2271960.1"
                     /translation="MNEINHTSERANTEKRTEKQIIMQKILNWFVFSLLLASIGAAIG
                     SKLSPELYLPLVVLEVALLITAMVVRRSKTINKVVGYPVVLAFAFVTGLTLGPTLTYY
                     FGAGQGAAVLMAFVTATVTFTTLAFIGAKMKKDLSFLSSALFAAIIILVIFSFVGVFL
                     PLGSMLSTIISAGGTIIFSLYILYDFNQIMKRDVELADVPMLALNLYLDFLNLFMFLL
                     RLFTGRD"
     gene            complement(4305..5075)
                     /locus_tag="U0280_002035"
     CDS             complement(4305..5075)
                     /locus_tag="U0280_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2271961.1"
                     /translation="MKPRGICFFDMDGTLLNSESKVLDTSLQALDKLRENNVIPVIAT
                     GRTLIEISHQMKITGIESAVMMNGQMAIFEGEKVYEDVIDADLLARLTEEAKSQNVEV
                     CYYNDKRIGATASTPVVKAHYDFLGEPMPEVRPNMYKEENINMALLLLETGDDYFPER
                     FPELQFVRNTPFSNDVLRKGGSKAVGISKLLEVMGYQDVPTYAFGDGMNDLEMFGAVD
                     YAIAMENAVPLLKEKATFVTKDNNSDGIMLGLKQFDLI"
     gene            complement(5139..5924)
                     /locus_tag="U0280_002036"
     CDS             complement(5139..5924)
                     /locus_tag="U0280_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2271962.1"
                     /translation="MIRKLTVSDNEEVMALLKPEATLNLFIIGDIENFGYESDVQDLW
                     GEFDSEDKLHALLLRFDTFFLPYSKDANFDAKAFSEIIAKHDTYEVSGISRVTKELEP
                     FLPELAEKRQDTYFCECEHVNRISVNQDVIVRTAVAEDVAPIIKMRKHIKEFGSRDEN
                     EELIIRQIEKGVKRIYYIEQDQEVVAVAETSAENSFSAMITGVATSDGYRQRGFASTL
                     LKKLCCDVLAEGKKPCLFYDNPVAGEIYHRLGFEHTGDFVMYK"
     gene            complement(6045..6389)
                     /locus_tag="U0280_002037"
     CDS             complement(6045..6389)
                     /locus_tag="U0280_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271963.1"
                     /translation="MKNKAEKQRIATNLSLYMKINGYTHRTFALAVGISQNTLKALMI
                     GKMRNENKFQKYISQITESLALEEKFFEQPKEAITAAPITFQDTNKMHLGDEKFNAIS
                     LMLKIGEIHYES"
     gene            complement(6546..7475)
                     /gene="hemH"
                     /locus_tag="U0280_002038"
     CDS             complement(6546..7475)
                     /gene="hemH"
                     /locus_tag="U0280_002038"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEM2271964.1"
                     /translation="MTKKVGLLVMAYGTPYKDEDIERYYTDIRHGHKPSEEMIADLRG
                     RYHAIGGLSPLAKITEAQAYGLEKALNESQDEVEFKAYIGLKHIEPFIEDAVEAMHKD
                     GIEEAISIVLAPHYSSFSVEAYNKRAKDAADKLGGLRIKAINDWYKQPKFIQMWADRI
                     NETAKQIPADELLDTVLIVSAHSLPEKIKQHNDPYPDQLQETADFIFEKVVVPHYALG
                     WQSEGKTGEPWLGPDVQDLTRELYGREKYKHFIYTPVGFVAEHLEVLYDNDYECKVVT
                     DEVGAIYHRPPMPNSDPEFLEVLRTVVWEKYSN"
     gene            complement(7472..>8514)
                     /gene="hemE"
                     /locus_tag="U0280_002039"
     CDS             complement(7472..>8514)
                     /gene="hemE"
                     /locus_tag="U0280_002039"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEM2271965.1"
                     /translation="LFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYSLFEITHQ
                     PEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPIRSFQDVE
                     KLTMFKPEIEVPYVLDTIKLLADDMLDVPLIGFAGAPFTLASYMIEGGPSKNYHQTKS
                     FMYREPEVWAILMEKLGRMTANYLIAQINAGASAVQLFDSWVGALSRADYAEYIRPVI
                     EMIVREVKAVHPTTPIIMQAVGASHLLAEWETMPLDVVGVDWRETITSARKKVPTKAI
                     QGNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHE
                     RSEILLKKDDIK"
BASE COUNT         2347 a         1727 c         1414 g         3026 t
ORIGIN      
        1 taatatttat ttactggttt taaatcatcg tttaattcat atactagtgg cacgcctgtc
       61 ggaatttcta aatccattat ttcatcatcg ccaatacctt ctagaaattt cactaatgct
      121 cgtaaactgt taccatgcgc cgcgatgact actcgccgtc cttctttaat ttctggagca
      181 atcgtgtcca tccaataagg aataacgcgt tctaatgtta ctttcaagtt ttcacctgcc
      241 ggaatagcgt gtgtatcaag gagttgataa cggcgatcat ttttggcttg tctttcgtcg
      301 ttttcttcta gtaatggtgg aagagtatca tagcttctgc gccatttttg tacttggtca
      361 gcaccatatt tttcagcagt ctcttgtttg ttaagacctt gaagtgcgcc ataatgccgt
      421 tcgttcaagc gccaagattt atgaactggt acccacattt ggtcagattc ttctaacaca
      481 taattaagtg ttttaatagc tcgcgttaaa acagaagtga aggcaacatc gaattctaag
      541 cccgcttctt taattctttt tcctgcagtc attgcttcta caacgccttc ttgtgacaag
      601 tcaacatcat gccaacctgt aaataaattc aatttgttcc attcactttg accatgacga
      661 attaatacta atttcatctt cctcatcctt ccattttcgt ctattatcta aacgactaat
      721 ccaaccaaag ttttcccttt caagcgaggt gtcaaacctt ttctatgtta ttctgtgact
      781 ttaaaagtaa attctttatc tgctaaatca atttctacag atgaatgtgg catgatttta
      841 cctgatacaa tttctctagc aagtggcgtt tcaacatgac gcacaatata gcgtttaagt
      901 ggtcgtgcgc catataccgg atcatatgct tcttccgcaa taaatgcttt tgcattatcg
      961 gaaatagtaa tcgtaatttc ttggtcggct aaacggattt gaagttcttc tactaatttc
     1021 tccacaatgc ctttaatatc agctagtgtt agtggtttaa atagaataat atcatctacg
     1081 cggtttaaga attccggttt gaattcactt tgtaaaattt gcattacatc cgattctaat
     1141 tccggtgaaa tttcgccttc ttcggttctt tcaagtaata aattagagcc aatatttgac
     1201 gtcataataa ttactgtatt tttaaaatca attaatcgac cttgtgaatc tgtgatacgt
     1261 ccatcatcaa gtacttgtaa tagtatgtta aatacatctg gatgagcttt ttctatttca
     1321 tcaagtagga cgattgaata aggatttcgt cttacagctt cagtaagttg accgccttct
     1381 tcatagccaa catagcctgg aggagctccg acaagtcttg atacggaatg tttctccatg
     1441 tattcagaca tatcaattcg aatcatatga tcttctgaat caaacatatt aaatgcgagt
     1501 gctttggcaa gttctgtttt accaacacct gttggcccta ggaaaatgaa tgagccaatt
     1561 gggcgtttcg gatctttaat accagcgcgt gcacgaagta cagcatcact aactaattga
     1621 acagcgtcat cttgaccaat tactttttga tgaagttcat ctgctaattt aagcagtttt
     1681 tcgcgttctc cttctactaa cttggtcact ggaattcctg tccaacgtcc gacgatttct
     1741 gcaatttcat tttctgttac ttcttcttgt aaaatccggt cttcttgtgc agttttttcg
     1801 cgattttctg cttctaactc tagtaattct ttttccacag ccgggatttt accgtgtcgt
     1861 aattctgctg ctttatttaa atcataatta ttttctgctt cttctaattc atgacgcaaa
     1921 tgatcgattt gttctcggac ctcacgaatt ttactaattt cgtttttctc agattcccat
     1981 ttcgatttca tttgattggc ttcttctttg tagtcagcta gttcgcgttg caatatttct
     2041 aaacggcgtt cactcgctgg atctttttct tcttttaaag ccgcttcctc aatttctaat
     2101 tgcattactt ttctcgttac ttcgtcgagt tcacttggca tcgagtcaat ttcgacacga
     2161 atagttgcgc atgcttcatc tactaagtcg attgctttat ctggtaagaa gcggtccgta
     2221 atataacgat tagaaagact cgctgctgca actaaagcat tatcatgaat atttacccca
     2281 tgatgaattt caaagcgttc ttttaaccca cgtaaaatgg atactgtatc ttccactgtt
     2341 ggttctggga caagtacttt ttggaaacgt ctttcgagtg cggcatcttt ttcaatatat
     2401 tggcggtatt catctaacgt agttgcgccg atacagtgta gttcaccgcg ggcaagcatc
     2461 ggttttaaca tatttccggc gtccattgcg ccatctgttt tacctgcgcc gacaatcgta
     2521 tgaatttcat caataaatag taaaatttga ccgtcacttt gtttcacttc ttgaagtact
     2581 gctttcaaac gttcttcaaa ttcaccgcga tatttagctc cagcaataag ggaaccgata
     2641 tcaagcgaga taatcgtttt atctttcagc ccttctggaa cgtcttttcg aacgattcgt
     2701 tgtgctaaac cttcgacaat ggctgtttta ccaacgcctg gttcacctat cagaactgga
     2761 ttattttttg tttttctaga taaaattcgg ataacgttac gaatttctgc atcgcgtccg
     2821 attactggat cgagtttacc acttctaact tccgcgacta aatcacgtcc atattttgtt
     2881 aaggcttcat agttttcttc tgcattttga gaagtcactt ttttccctcc tctgattttt
     2941 aaaatagctt cttgaatttg ttttttagat ttatgttgtt tttttagatt cattgttatt
     3001 ggatttgatt tttgatccat gacagctaag attagatgtt ctgttgatac aaaatcatcg
     3061 tctaattgtt tttgttcttt ttcggcatcc cgcatcaact gaaaaagtgc ttggctcatt
     3121 gcttgaccat agtttacacc gcttccagag accacaggaa tttttgttaa agcatcttct
     3181 actgtttttt gaagtgcatc tatatctact tctgctacat catatacacg tttggcaaaa
     3241 tcactctctg ttaataacac tttaaaaaca tgagcgacgt cgatttcttg atgttcggat
     3301 gcaattgcta aattttgagc gtccgcaatt gtttgctgga cttgttgcgt aaatttttgt
     3361 aaatccattc attcgtcctc cttataaaag ataagtctga ccttttttga ccttaacttt
     3421 attatagttt tttatcttgc ttttgtctaa caaaaaccat cttttttata gaaaaagatc
     3481 tgccaatttt taggttggca gatcttctga atttcttaat cacgacctgt aaataggcgg
     3541 agtaagaaca tgaataagtt aaggaaatca aggtataaat tcagcgcaag cattggtaca
     3601 tctgctaatt ccacatcgcg cttcatgatt tggttgaagt catacaaaat atatagtgag
     3661 aaaataatcg ttccgcctgc tgaaataatt gttgatagca tagaacctaa tggtaaaaag
     3721 actcctacaa agctaaatat aacgagaata ataatcgcag cgaataaagc actgcttaag
     3781 aaagataagt cttttttcat ttttgcgcca ataaaagcta gcgttgtgaa agtaacggtt
     3841 gctgtaacaa atgccattag aacggcggca ccttgccctg caccaaaata atatgtcaaa
     3901 gttggtccaa gcgttaagcc tgtgacaaac gcaaatgcta gtactactgg gtatcctacc
     3961 actttattaa tagttttact tcgacgcact accatcgctg tgataagtaa cgcgacttct
     4021 aagacgacaa gaggcaaata aagttctgga cttaatttac tcccaatcgc agcaccgata
     4081 gatgcaagta gcaaagaaaa tacaaaccaa ttaagtattt tttgcataat aatttgtttc
     4141 tcagttctct tttctgtgtt tgctcgctcg gatgtgtgat tgatttcgtt cattaacatt
     4201 tctcctcttc caattgatta gttttattat atcaaaagaa ttattacaat tctatcggtc
     4261 ttgcgttgga atttcacaaa aaaagaagcg cacgaggcac ttctttaaat taaatcaaat
     4321 tgtttcaagc caagcataat gccgtcacta ttgttatctt tcgttacaaa agtagctttt
     4381 tcttttaata atggtacggc attttccatt gcaatggcat aatccactgc gccaaacatt
     4441 tctaaatcgt tcattccatc accaaacgca taagttggaa cgtcttgata gcccattact
     4501 tcaagtagct tcgagatacc aactgcttta gatccgcctt ttcttaagac gtcattacta
     4561 aatggtgtgt tgcgaacaaa ttgtaattct ggaaagcgtt ctggaaaata atcatcacca
     4621 gtttcgagta aaagaagagc catattgatg ttttcttctt tatacatatt aggccttact
     4681 tctggcattg gctcgcctaa aaaatcatag tgtgctttta caactggtgt acttgcggtt
     4741 gcgccaattc ttttatcatt ataatagcaa acctctacat tttgtgattt agcttcttcc
     4801 gtcaaacgag caagtaaatc agcatcaatc acatcttcgt acactttttc tccttcaaag
     4861 atagccattt gtccgttcat cattactgcg gattcaatgc cggtaatttt catttgatga
     4921 ctgatttcta tgagcgtccg accagtagca ataacaggaa taacattatt ttctcgaagt
     4981 ttatcaagtg cttgaagcga ggtatcaagt actttggatt cactatttaa cagtgttcca
     5041 tccatatcaa aaaaacaaat tccacgtggt ttcacattat tcatccttta ctaacataat
     5101 atatccatca taccaatctt acggatacaa agtaaaggct atttgtacat aacaaaatct
     5161 cctgtatgct caaaaccaag acggtggtat atctcaccag caactggatt atcgtaaaat
     5221 aaacatggtt tctttccttc tgctaataca tcgcaacata atttttttag aagtgtactt
     5281 gcaaaaccac gctgtctata tccatcactt gtcgctacac ctgtaatcat tgctgaaaag
     5341 gaattttctg cagatgtttc tgctacagca acaacttctt ggtcttgttc aatataataa
     5401 attcgtttca cgcctttttc aatttggcga ataattaatt cttcattttc atcgcgtgaa
     5461 ccaaattctt taatgtgttt gcgcatttta ataattggag ctacgtcttc tgccactgcc
     5521 gttctgacaa taacgtcttg atttacagaa atacgattta catgttcgca ttcgcaaaaa
     5581 taagtgtctt gtcttttttc ggcaagttct ggtaaaaatg gttccaattc ctttgtgaca
     5641 cgagaaatac cgctaacttc gtatgtatca tgcttagcaa taatttctga gaaagctttt
     5701 gcatcaaaat tagcatcttt tgaatacggt aagaaaaacg tatcgaatcg aagtaacaat
     5761 gcatgtaatt tgtcttctga atcgaattca ccccaaagat cttgcacatc actctcgtaa
     5821 ccaaaatttt cgatatcccc aataataaat aagttgaggg ttgcttcggg ttttaaaagt
     5881 gccattactt cttcattatc agatacagtt agttttctaa tcatgtgcca cactcctatt
     5941 ttgaaaattg tcttcatttt acgtgagtta ggtaggttcg tcaagccctg aatcttacta
     6001 ttttgcgcca tataaaaaag ctcgggacaa ttagtcccaa gcttttatga ttcgtaatga
     6061 atttcgccaa ttttcaacat taagctgata gcgttgaatt tttcatctcc aagatgcatt
     6121 ttgtttgtat cttgaaaagt gataggtgct gctgtaatcg cttctttcgg ttgttcaaag
     6181 aacttttctt caagtgccaa actttctgta atttgcgata tgtatttttg gaatttattt
     6241 tcgtttctca ttttcccaat catcaatgct tttaaagtgt tttgagaaat cccgactgca
     6301 agcgcgaatg ttctatgagt gtatccattt attttcatat aaagtgacaa attagtggca
     6361 attctttgtt tttctgcctt gtttttcatt tgggtgaacc tcctgtcttt ctatagttat
     6421 cattatgccc ggtgaagatg agaatttgat taaaacttca tagtatttag ctaaaaatat
     6481 tgaaaacgtt ttctttgttt taaaaaaata tgccggaata acgaatatcc cggcaagtac
     6541 tttatttaat tgctatattt ttcccaaaca accgtcctta atacttctaa gaattctggg
     6601 tccgagtttg gcattggtgg tcggtgataa atcgcgccca cttcatcggt aactacttta
     6661 cattcataat cattatcata taaaacctct aaatgttcag ccacaaatcc aactggtgta
     6721 tagataaagt gtttatattt ttctcgaccg taaagttctc ttgttaaatc ttgtacatca
     6781 ggtccgagcc acggctcccc agttttccct tcactttgcc aacctaacgc gtaatgaggt
     6841 actactactt tttcgaaaat gaaatctgct gtttcttgca gttgatctgg gtacgggtca
     6901 ttatgttgtt taattttctc cggtaaactg tgtgcggaaa caattaaaac agtatccaat
     6961 aattcatcag ctggaatttg ttttgctgtt tcgttaattc tatcagccca catttgaata
     7021 aatttgggtt gtttgtacca atcattgatt gctttgatac gaaggccacc tagtttatca
     7081 gctgcatctt ttgctctttt gttgtaagct tcgacgctaa agctagagta gtgtggcgct
     7141 aaaacaatcg agattgcttc ttctattcca tctttatgca tagcttctac agcgtcttca
     7201 ataaaaggtt caatatgttt taaaccgata tatgccttga attctacttc gtcttgcgat
     7261 tcatttaacg ctttttctaa tccataggct tgtgcttcag taatttttgc gagtggagat
     7321 aatccaccaa ttgcatggta tcttccgcgc aaatccgcaa tcatttcttc acttggctta
     7381 tgaccatgac gaatatctgt atagtaacgt tcaatatctt catctttgta cggtgtcccg
     7441 tatgccatta caagtagacc tactttttta gtcattttat atcatccttt tttaatagaa
     7501 tttcgctacg ttcatggatg taattagtta gtttcttcaa catttctggt ggtacttccg
     7561 ggaaaacgcc atgtcctaaa ttaaaaatat aacctggttc tagtacgcct tcttgcaaaa
     7621 tacgatttgc ttcttttaaa catttctctg gtgcaagaag tgtggacgga tccagatttc
     7681 cttgaattgc ttttgttgga acttttttcc gagcacttgt gatggtttca cgccaatcga
     7741 cgccaacaac atcaagcggc attgtttccc attctgctaa aagatgactc gcgccaactg
     7801 cttgcataat aattggggtt gttggatgaa ctgctttcac ttctctaaca atcatttcga
     7861 ttactggtcg aatgtattca gcatagtcag ctcgactaag tgcccctacc caagaatcaa
     7921 acaattgcac cgcagaagcg cccgcattaa tttgcgcaat taaataattc gcagtcattc
     7981 gaccaagttt ttccattagt attgcccaaa cttctggctc gcgatacata aaactttttg
     8041 tttggtgata atttttcgat ggaccacctt ctatcatata gctagccaaa gtaaatggtg
     8101 cacctgcaaa gccaattaaa ggtacatcta gcatatcatc tgccaataat tttatcgtat
     8161 ctaggacata aggaacttct atttctggtt tgaacattgt cagtttttct acatcttgga
     8221 aagatctaat aggattatgt atgactggac caataccaga tttgatttca acgtctactc
     8281 ccatccccgg aagtggtgtc ataatatctt tgtataaaat ggctgcatca acaccatatt
     8341 gatctactgg taatttggtt acgtaagcac atatttctgg ctgatgagta atttcaaata
     8401 gagagtattt ttcttttaat ttgcggtatt ctggttgaga tctccctgct tgtctcatat
     8461 accaaaccgg aattcggtca acttgttctt ttcgcgctgc ttttaaaaat aaat
//
LOCUS       DASDXX010000121         8342 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.121, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000121 DASDXX010000000
VERSION     DASDXX010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8342
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.121"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(89..4135)
                     /locus_tag="U0280_002040"
     CDS             complement(89..4135)
                     /locus_tag="U0280_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2271966.1"
                     /translation="MLKKIFIALIALVVIINTVSFTAVSASTPTWLEQTMNSNEPFIK
                     EIEKETGKTRANITQTDLEAITALRVTGASDIPTNIDMLTHLTTLEVKNGTLSSVSNS
                     VGNLKELKILVLNDNNLSTFPMIAFQLPKLEELQVSGGTIEEIPATITNMASHLKFLG
                     ILNNHLVKVPDAIFTTNWTNATGGDLDLMAAGNQIVTNIPANYISQFNNGDNLLEFYD
                     NNYQKQDQLTTTPGYTIDVPVGTDFNQLTPDKTKLALTSGRTLLAQHEFEYYDDGSSS
                     LIHNGVAAAPGQATIFIKSKFSTQSNKFARTQVTVNITALNGGPITVKHEDTKGQELA
                     PPVILNGKDGDPYTTTQKTFPGYTLVATPANQNGTFTMNPATVNYVYSANDYKLTSTF
                     KDAQGQELKAPVVDTKDYHIQDNYTTTAATIPGYSLVATPANQNGTFGAGNVTVNYVY
                     KKDDYTLTSTYKDTNGQELKAPVVDATTYHYQDTYTTTAAVFPGYTLVATPTNATGTF
                     GSSNITVHYVYQANGYQLTSTFKDQQGKTIAPDDVDTKTYHVNDPYTTTAKTIPGYTL
                     VTTPTNNQGNFGTSDITVDYVYKAEDYTLTSTYKDAQGKELKQPVVDSKKYHIQDNYS
                     TSAATIPGYTLVSTPANETGTFHTSDVTVNYVYKLTDLKLTSTYKDAQGTELKPPVVD
                     SKTYHIQDNYATTAAVIPGYTLVATPANQSGTFGSTDIQVNYVYQAVAYKLTSTYKDQ
                     QGNDLALPKVDSKTYHIQDGYTTSDIAIPGYTLVAAPTNQTGTFGASDVTVNYVYKAN
                     DYTLTSTYKDAQGKELKTPVIDSQKYHINDTYTTTGATIPGYTLVAAPANQSGTFGAA
                     NVTVNYVYKADDYTLTSTYKDANGKELKAPVVDSKTYHTKDNYSTSAATIPGYTLVAA
                     PTNQTGTFNTSNVTVNYVYKANEYTLTSTFKNVQGTELKPAIVKKGFIIKDGYATSGV
                     TIPGYTLVATPSNKKGTFGASNVTVNYVYKANGYALITTYKDTQGKDLKPLAIDTKTY
                     NINDPYTATALNISGYTLTTTPANEKGVFGASDETVNYVYKANDYTLTTTYKDANGKE
                     LQAPKVDAKTYHIQDTYKTTAAIIPGYTLVATPKNDQGTFGASNVTVNYVYQTNDYTL
                     TSTFKDAQGNELKAAEIDVQKYHIHDTYTSKAAVIPGYSLEKTPTNETGTFNASDIQV
                     NYVYKANDYQLTSTFKDQQGNEIALPTVDAKTYHIHDAYTTKAHLIPGYSLVAAPKNQ
                     IGAFGTSDVTVNYVYKKDAIIKPITPAKPTILTIKTPASKVVKTKVVKQTLPKTGDDD
                     AGLLNLLRLIGLVLILGVFLAVGSKKLR"
     gene            complement(4337..5209)
                     /locus_tag="U0280_002041"
     CDS             complement(4337..5209)
                     /locus_tag="U0280_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2271967.1"
                     /translation="MISYGELIRQIRQSKKISQKEVYTGVISKSYAIEFEKGTHAISS
                     LLLEKIVAKLMVSMEEFFLMYHQEELPEKEDFWETYARTCKTDEASAWESLYQKISLE
                     KGKVNQVKSAAIKLELDHIKGKQVADKKAVQILENYLIEAVFWTLQDIFLFTRMMHYL
                     PLKSRVPFYYKLLNTLDRYRHFERGRSILQSALASIMDDFIERNEIEHMELMIKSLEK
                     ISEDCDGTYFKILCMYYRGIVRWGEGEEREGGEEIEQAVAILRALGYENKAIEYETMY
                     RQFARENNDIKTME"
     gene            complement(5373..6275)
                     /locus_tag="U0280_002042"
     CDS             complement(5373..6275)
                     /locus_tag="U0280_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE/MutR family transcriptional regulator"
                     /protein_id="HEM2271968.1"
                     /translation="MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITL
                     SLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLE
                     RTEQTEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRI
                     FSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYAN
                     LVLEKLKEASETSGSFNSAFYRIVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHY
                     EAIADLYSVVLKQFLEKENIQVED"
     gene            complement(6543..7007)
                     /locus_tag="U0280_002043"
     CDS             complement(6543..7007)
                     /locus_tag="U0280_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM2271969.1"
                     /translation="MRKSRWLLILLLLIVLVALLACVDSGNGDVSGVPAKRGKQHFPP
                     TDTKKGWIELLATDGISSQGDLPCVYEEAESVEKLEVHMKELSTVSLTYVYIDGYIVQ
                     MEQGGGELSFQIQLSKAELKRGIHELTAVQYQENNPDTNKVELLKRANYEVK"
     gene            7165..7938
                     /locus_tag="U0280_002044"
     CDS             7165..7938
                     /locus_tag="U0280_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEM2271970.1"
                     /translation="MFSVTTFNIRFDDTSERKKSWELRKTLTKSLLDKYQWDFMGVEE
                     PLLPQMRDMKEMQDWDYFGVGRDDGFEKGEFTAVFYNSTRFTLLQEGHFWLSETPEVP
                     SIHSTAMFPRICVWGKLEDSTDGKQFYIFNTHLDHISEEARLFASQLLLHKASLIQED
                     LPVILLGDFNTEPSTPTYNLITQRYQDAQLLSKTPVKGPLGSFHDFQPLRPESELEKI
                     DYIFVSNEFHICSYETSTDEIDGCSASDHFPVMAVVGWT"
     gene            complement(7973..>8342)
                     /locus_tag="U0280_002045"
     CDS             complement(7973..>8342)
                     /locus_tag="U0280_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM2271971.1"
                     /translation="AAVVTESSYGIERFLGEDETIIQIFKFVRDEVIITSKGIFNVDA
                     QGITGKKVEYKFFPKKALKYVSIETAGTLDRDFDLKIGVDGNTVVTQNTSFSAPISLK
                     VHKNDTEMGFALYKMIKEML"
BASE COUNT         2289 a         1616 c         1424 g         3013 t
ORIGIN      
        1 ttttccaaaa tgggtatttc taatgtcgga tatattagtt aaaacaccac cacaacaatc
       61 tgcggcggtg ttttaatcta cgttatactt atcttaattt tttacttccg actgccaaaa
      121 atacgcctaa aattaaaacg agtcctataa gtcttagcag gtttaatagt ccggcatcgt
      181 catcccctgt tttaggaaga gtttgcttaa ctactttagt cttaactact ttgcttgcag
      241 gtgtttttat tgtaagaata gttggtttcg ctggagtaat aggtttgata atagcatctt
      301 ttttatacac ataattgact gttacgtcac ttgttccaaa agcacctatt tggttctttg
      361 gtgcagctac taggctatat cctggaatca agtgagcttt cgttgtataa gcgtcatgaa
      421 tgtgataagt ttttgcatca actgttggta atgctatttc gttgccttgt tgatctttaa
      481 aagtagaagt aagttgataa tcatttgctt tatacacata atttacttga atatcacttg
      541 cattaaaagt acccgtttcg ttcgttggtg ttttttctaa actgtaaccc ggaatcacgg
      601 ctgctttaga tgtgtaagtg tcatgaatat ggtatttttg tacgtctatt tctgctgctt
      661 ttaattcgtt tccttgagca tctttaaatg tcgaagttag cgtgtaatca tttgtttggt
      721 acacgtaatt cacagttaca ttgctcgctc caaaagtacc ttggtcattc ttaggtgttg
      781 ccactaatgt atacccagga atgattgctg cagttgtttt gtatgtgtct tggatatgat
      841 aagttttcgc gtctacttta ggtgcttgta gttctttgcc gtttgcgtct ttgtaggtag
      901 ttgttaacgt ataatcattt gctttatata cgtaattaac tgtttcatca cttgcgccaa
      961 atacaccttt ttcattggct ggtgtagttg ttaatgtgta acctgaaatg tttagcgccg
     1021 ttgcagtgta tgggtcgtta atattgtatg tttttgtatc aatggctagt ggttttaagt
     1081 ctttaccttg tgtgtcttta tatgttgtga ttaatgcata accattcgct ttatatacat
     1141 aattaactgt tacattacta gcaccaaatg ttcctttttt gttcgatggt gttgccacta
     1201 atgtatagcc cggaattgtt acgccgctag tcgcatagcc atccttaata ataaatcctt
     1261 ttttcacgat agctggtttt agttctgttc cttgtacatt tttgaaagtg gaagttaagg
     1321 tatattcatt cgctttgtaa acataattga ctgtcacatt gctcgtatta aatgtacctg
     1381 tttgatttgt tggtgctgcc actaatgtgt agcctggaat ggttgctgcg ctagtagaat
     1441 agttatcttt tgtatggtaa gttttgctgt ctacaactgg cgcttttaat tctttgccgt
     1501 ttgcatcttt gtaggtcgaa gttaatgtgt aatcatctgc tttgtataca tagttgactg
     1561 ttacattcgc cgcgccaaat gtacctgatt gattcgctgg tgctgcgact aatgtataac
     1621 ctggaatagt agctcctgtc gtagtataag tgtcgttaat gtgatatttt tgactgtcta
     1681 tgactggcgt ttttaattcc ttaccttgcg catctttata tgttgaagtt agtgtgtagt
     1741 cattggcttt gtagacataa ttcacggtta catcactcgc gccaaatgta cctgtttgat
     1801 tcgttggagc cgcgactaat gtataacctg gaatagcaat atcactcgtc gtgtaaccat
     1861 cctgaatatg gtacgttttc gaatctactt ttggtaaagc taaatcattc ccttgttgat
     1921 ctttatacgt cgaagttagt ttataagcaa ctgcttgata cacatagttc acttggatat
     1981 ccgtgctacc aaaagtacct gattggttcg ctggtgttgc gactaatgta tagccaggaa
     2041 tgacagctgc agttgtagca tagttatctt gaatatgata cgttttacta tctacaacgg
     2101 gtggttttaa ctccgttcct tgcgcatctt tatatgtcga agttaatttt aagtctgtta
     2161 atttatacac ataattaacc gtgacatcgc tcgtatggaa ggttcctgtt tcgttcgcag
     2221 gtgtcgatac tagcgtataa cccggaatgg ttgctgcact tgtagaatag ttgtcttgaa
     2281 tatgatattt tttactatct acaacgggtt gttttaattc tttaccttgc gcatctttgt
     2341 acgtcgaagt taatgtataa tcttctgctt tataaacgta atcaaccgta atatcgcttg
     2401 ttccaaaatt accttggttg tttgtagggg tcgtcactaa tgtgtagccc gggatcgttt
     2461 tggcagttgt tgtataggga tcgttcacgt gataggtttt agtatcgaca tcatctggtg
     2521 cgattgtctt cccttgttga tctttaaatg tagaagttaa ttgatagcca tttgcttgat
     2581 atacgtaatg aacagtgatg tttgacgaac caaatgtccc agtagcgttg gttggtgttg
     2641 ctactaacgt ataacctggg aaaactgcgg ctgttgttgt atacgtgtct tgataatgat
     2701 acgttgtcgc atctaccact ggtgctttta gttcctgacc gttcgtatct ttgtaagtgg
     2761 aagtgagcgt ataatcgtct tttttgtata cataattaac ggtaacattc ccagctccaa
     2821 aagttccgtt ctgattagca ggtgttgcaa ctaaagaata gcccggaatg gttgctgctg
     2881 ttgtagtata gttgtcttgg atatggtaat cttttgtatc cacaactggc gctttcagtt
     2941 cttgaccttg ggcatctttg aaagtagatg ttagtttata atcatttgcg ctgtatacat
     3001 agttgactgt agccgggttc atggtgaatg taccattttg attggctggt gttgcaacta
     3061 aagtatagcc tgggaaagtt ttttgtgtcg ttgtataagg gtccccgtct ttaccattta
     3121 aaatgacagg tggcgcaagt tcttgtcctt ttgtatcttc atgtttcact gtaataggtc
     3181 cgccgtttag cgcagtgatg tttactgtaa cttgtgttct ggcaaatttg ttcgattgcg
     3241 tggaaaactt gctcttgatg aaaatggtcg cttgacccgg tgctgctgct acgccattgt
     3301 ggattagtga acttgaacca tcatcataat actcgaattc gtgttgcgcg agtaaagttc
     3361 gtccagatgt tagtgcgagt ttcgttttgt ctggtgttaa ttgattaaaa tcagttccaa
     3421 caggtacatc aatggtatat ccaggtgttg tagttagttg gtcttgtttt tgatagttgt
     3481 tatcgtaaaa ttctaatagg ttatccccat tattaaactg gcttatatag ttagcaggaa
     3541 tattggttac aatctggttc cctgcagcca ttaagtctaa gtctccccca gtagcatttg
     3601 tccagttcgt agtgaaaatt gcgtctggaa ccttcactaa atggttattt aatatcccta
     3661 agaatttcaa atgactcgcc atatttgtta ttgtggcagg gatttcttct attgttcccc
     3721 cagaaacttg taattcttct aacttaggta gttggaaagc aatcattgga aaggtgctta
     3781 aattattatc attcagaact aagattttta actcctttaa attccccact gagttagata
     3841 cggaagataa tgttccattc ttaacttcta acgtagttaa atgagttaac atatcgatat
     3901 tagtcggaat atcacttgcc cctgttactc gcaaggcagt tatagcttct aaatctgtct
     3961 gtgtaatatt cgctctcgtc ttaccagttt ctttttcaat ctcttttata aacggttcat
     4021 tactattcat ggtttgttct aaccatgtag gtgtgcttgc agagacagcc gtaaaactaa
     4081 ctgtattgat aataactaca agcgcaatta atgcaataaa tattttcttt aaaataacaa
     4141 tcttcctcct tttaacgcta aatttgcagt gtcagttggc aatttattcc tttgccaaag
     4201 cccctccctt cactgtcaat atggctttaa gccgtacttc agtctatata atactatgcg
     4261 gagtcttaaa attttctaat gtcgcatata tactactcaa aaaaagaaaa ccaaaaagaa
     4321 tagtcctttt tagctttcat tccatcgttt ttatatcgtt gttttccctc gcaaattgcc
     4381 ggtacatggt ttcatactct atcgctttat tttcataacc taatgctcgc aaaatagcta
     4441 ctgcctgctc gatttcttcg ccaccctcgc gctcttcacc ttctccccac cgcacaattc
     4501 cacgataata catacaaaga attttgaaat aagtaccatc acagtcctca ctaatttttt
     4561 ctaagctttt tatcattagc tccatatgct ctatttcatt tctctctata aaatcatcca
     4621 tgatactagc cagcgccgat tgtaaaatgc ttcttcctcg ttcaaaatgg cggtatctat
     4681 ccagcgtgtt taacaattta taatagaacg gtactcggct tttcagtggc aaatagtgca
     4741 tcatccgcgt aaataaaaag atatcctgca atgtccaaaa aaccgcttca atcaaataat
     4801 tttccaaaat ttgaaccgct tttttgtccg ccacttgttt gccttttata tgatctaact
     4861 ccagttttat cgccgcgctt ttcacttgat taacttttcc tttttctaat gatatttttt
     4921 ggtaaaggga ttcccaagcg cttgcttcat ccgttttaca tgtccgcgcg taagtttccc
     4981 aaaaatcttc cttctccggc aactcctctt gatgatacat taagaaaaat tcctccatac
     5041 tcaccattaa cttagcgaca attttctcga gtaataggct tgatattgca tgtgtcccct
     5101 tttcaaattc aattgcataa gatttactaa taacccctgt gtacacttct ttttgggaga
     5161 tttttttaga ctgtcttatt tgccgaatca gctcaccata acttatcatc cgaagacctc
     5221 ctcttagctc aattcttgcc tttattttac attcctttct tttctctctg taaatagtgc
     5281 tatatatagt acataaaaca tctttaccac aaacaaaaaa acactaaaac gactccattt
     5341 tagtgttttt taaatagaaa ttcttcggat agttaatctt ctacttggat attttctttt
     5401 tctaaaaatt gttttaatac cacgctatac aaatctgcta ttgcttcata atgcagttct
     5461 ttccatgttt gaatggctct tttggcttgg cgatagccct tttccacttc gccttctttc
     5521 atccaaatag ccccttgata ataattggct actattcgat aaaaagcact gttaaaacta
     5581 ccacttgttt cagatgcttc ttttaatttt tcgagtacta gattcgcata attgatttta
     5641 ttctgtatga tgagttcatc tgtcagatta gcaaatagat ggcaaaatag cagtcttcct
     5701 ctatcatagt acctatactt ttcatacgat ttcaacataa tttgataaaa gtgaatttgt
     5761 acttcttcct caaaaaatga tatgccgttg gaaaaaatac gaacctcttc taaagtccac
     5821 gtctgcattt tccaaagata gtcatgaata atttttttat attcatcaga aatattcgat
     5881 tcatcaaaca cattcgtacg caaataatga ttaatcgttt gaattctcgt atgaagtatc
     5941 gcttttctaa cttctgtctg ctccgttcgc tctaaagtta ttttatctag caacgcctgc
     6001 atccctacaa catcattttt acctgatagc tcgacgaaat caatccaaaa actatcatcc
     6061 tctgtcgaag aaaagtctct gtaaataaaa aagaattcat ctaaaggaac catgatccgc
     6121 tttaaaattt cttcaaacaa actcaaagta atctcgtgtt ttcctttttc aaatccgatt
     6181 gcataagacc tagatataat tcctgtgtat acctcttttt gagtcaaacc tttagatagc
     6241 cgtatttccc gaatcaattc gccatatgaa cccatatgat atccccctaa ttaagttctt
     6301 ccatttcaaa aagtcggaat gcagtatcta tgtctatgct ttaatttctc tactccaaac
     6361 aatttaggaa tcattgttct taaaatatat accctaaaca ctagtatttt aattctttta
     6421 aaagcgaaaa gctacttaca atatcgtcat ctttcttttg taagtattaa tagcacaaaa
     6481 aaagaatgtc atttttcaca ttctctttaa aaatatggtt atgaattgtt tattagtctt
     6541 ttttatttca cttcataatt agcacgtttt aaaagctcca ctttgtttgt atcaggatta
     6601 ttttcttgat attgcacggc cgttaattcg tgaattcctc tttttaattc tgctttactt
     6661 aattgaattt gaaaggaaag ttcgccgcca ccttgttcca tttggacgat gtagccatca
     6721 atataaacat aggtcaaact caccgtactt aattctttca tatgaacttc caatttttct
     6781 acagattccg cctcttcata aacacaaggc agatcacctt gacttgaaat tccatccgtg
     6841 gcaagaagtt ctatccatcc ttttttcgta tcagttggag ggaaatgctg ttttcccctt
     6901 ttagccggca caccggaaac atctccattc ccgctgtcca cgcatgctaa taatgccact
     6961 aatactatca atagtaataa tatgagcaac catcgacttt ttcgcaacat agtgacactc
     7021 cctttttaca acaatacaat ggttttattt ttccagaaaa aatgtagaat atatactaca
     7081 taaaacccaa atcagtgaaa cgttttcata aatatgctaa actctctttg taaaacattc
     7141 caatgaaaag aaggatgtgg aaaaatgttc agtgtaacta cttttaacat tcgttttgat
     7201 gatacctctg agcggaaaaa gagctgggaa ttgcgtaaaa cactaacaaa atcattactt
     7261 gataaatatc aatgggattt catgggagtg gaggaacccc ttctgccaca aatgcgcgac
     7321 atgaaagaaa tgcaagattg ggattatttt ggtgtaggac gagatgatgg ttttgaaaaa
     7381 ggagaattta ctgctgtttt ttataattct actcgtttca ccttgttgca agaagggcat
     7441 ttttggcttt ccgaaacgcc tgaggttcct tccattcact caacagccat gtttccacga
     7501 atttgcgttt ggggaaaact agaagattca acggatggaa agcaatttta tattttcaat
     7561 acacatttag atcatatctc tgaagaagct cggctattcg caagccaact tttactacat
     7621 aaagcgagct tgattcaaga agatttaccg gtaattttac ttggagattt caatacagag
     7681 cctagtacac cgacgtacaa cttaataact caaagatatc aggatgcgca gttactttct
     7741 aaaactcctg ttaaaggacc ccttggtagt tttcatgatt ttcaaccact ccgacctgaa
     7801 agcgagctag aaaaaattga ttacatcttt gtgtctaatg agttccacat ctgctcttac
     7861 gaaactagca cagacgaaat agacggctgt tctgcttctg atcattttcc tgtgatggca
     7921 gtagtaggat ggacataaaa aaagagaaga cgatattcgt cttctcttct actcataaca
     7981 tttctttaat cattttataa agcgcaaagc ccatttccgt atcattttta tgtactttta
     8041 aggaaattgg tgcagagaaa gatgtatttt gtgtcacgac tgtattgccg tcaacgccaa
     8101 tttttaagtc aaaatcacgg tccaaagttc cagctgtctc aatagaaaca tattttaatg
     8161 ctttcttcgg gaaaaactta tattctactt tctttccagt tattccttga gcatccacat
     8221 taaaaatccc tttagaagta ataataactt catctcttac aaacttaaaa atctgaataa
     8281 ttgtttcatc ttctcctaaa aatctctcaa tgccataaga agattcggta actacggcag
     8341 ct
//
LOCUS       DASDXX010000122         8323 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.122, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000122 DASDXX010000000
VERSION     DASDXX010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8323
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.122"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            45..356
                     /locus_tag="U0280_002046"
     CDS             45..356
                     /locus_tag="U0280_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEM2271972.1"
                     /translation="MNWKAFIAGVGAGAAAGHLVYHYLLSDKTISGDVILEKVKDAFK
                     QEGPIEGSWIQLKKQHYKKFAIDTFVYHGGITCIREGEKKQFEFIADANTGTIIDVYL
                     A"
     gene            complement(393..641)
                     /locus_tag="U0280_002047"
     CDS             complement(393..641)
                     /locus_tag="U0280_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEM2271973.1"
                     /translation="MEIEQKKALVTRFAKIEGHVRSIKTMTEEERDLETIMQQIAAVK
                     KAMDAAAKLIYTEQMKELIEQGETDEVVIKKKIDSFIR"
     gene            complement(776..1627)
                     /locus_tag="U0280_002048"
     CDS             complement(776..1627)
                     /locus_tag="U0280_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2271974.1"
                     /translation="MDSIQIGKIKIYWLRGGYTHFDGGAMFGVVPKPLWEKKYPANDK
                     NQLANVTDPMFFQYLGKNYLIDSGLGNRRLTEKQKRNYGVTEESFVLEDLAQLSIAPE
                     DIDFVLMTHLHFDHVLGLTGVSEEGSFYSIFPNAEIWTSKTEWEEMKHPNIRSKATYW
                     QENWQTIAGQIHTFTKEKEFNDAIKMTHTGGHSNGHSVVWIESDGEKAIHMADIFPTF
                     AHQNVLWVTAYDDYPMTSISAKQEIFKQTFGENYWFLSYHDARFRAVQMDGNGKIEAE
                     LKIEQRN"
     gene            complement(1688..2332)
                     /gene="trmB"
                     /locus_tag="U0280_002049"
     CDS             complement(1688..2332)
                     /gene="trmB"
                     /locus_tag="U0280_002049"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEM2271975.1"
                     /translation="MRVKHKPWAKDRLKEFPAIYIKNPEDFKGQWREVFGNDNPIHIE
                     IGSGKGQFISGMAKANPEINYIGIEMIESVLVSALDKAIEADVSNLRLVARDAKLLEE
                     CFEKGEIAQIYLNFSDPWPKKRHTKRRLTNPTFLTIYERLLPKAGEIHFKTDNRSLFE
                     YSLVAFSEYNMLLTFVSLDLHNSDYEGNIKTEYEEKFSAKGFPIYRLEAKFDRN"
     gene            complement(2339..3121)
                     /locus_tag="U0280_002050"
     CDS             complement(2339..3121)
                     /locus_tag="U0280_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM2271976.1"
                     /translation="MKDNFFGREYDIAPAGGETGQAFVATHEDEKFFLKRNSSPFLAA
                     LSVENIVPKLVWTRRVENGDVITAQKWVNCHILTREEMVGPRVAKLLAKIHHSENLQH
                     MLAKIENCYFSADQLLSLIKVNTKANNELSKEIIAAIRYLEQNLSAAQTNDYVVCHGD
                     VNHNNWIISEENELFLVDWDGAMLADPANDIGMILYQYIPRKDWVSWLSNYGTTLTEE
                     LHRKLKWYTICQTVMQLITEHSNEANERAKQIFQNAIEDDEV"
     gene            complement(3333..4802)
                     /locus_tag="U0280_002051"
     CDS             complement(3333..4802)
                     /locus_tag="U0280_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEM2271977.1"
                     /translation="MNMKAASTSVKRNGILIVMLMGAFVTILNQTLMNVALPSIMKDF
                     GITASQGQWLSTGFMLVNGVMIPMTAFLIERFTTRQLYLFAMITFAIGTAIGGFATDY
                     TMLIAGRMVQAIGAGIVMPLLTVVVLNLFPMERRGRAMGLIGLAMNFAPAIGPTLSGW
                     IVQQYDWRNLFFIIIPFAILDIVVAIFLLKNVGKRTFPKLDILGVIMSTVGFGSLLLG
                     FSNAGDHDWLTWKVAGFIILGLVVLGIFIRYQTSNKAPLLNFRVFKYPTFALTTAISF
                     FVVMGLFGGMLLLPIFLQTVRGFSPLESGLVLLPGALVTAILSPVTGVMFDRFGAKYL
                     SLVGLIIMAGSTFMFTNLDESTTLTFIIIVQTIRSAGMAMVMMPLQTAALNSLPLKLA
                     SHGSAMFNTMRQVAGSIGTAALITVMSKSAASFATKLGPADVIGKTKTDIANHVLIHG
                     IETAFLVAGILSVVACVLALFIQKNRSAMDPIVTKTEKA"
     gene            complement(4799..5239)
                     /locus_tag="U0280_002052"
     CDS             complement(4799..5239)
                     /locus_tag="U0280_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2271978.1"
                     /translation="MDEKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIREL
                     QKESELTLGELAERMKLGKSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATK
                     AAETYHVFFNRLEPILEIGEERLKEMLEMHREIITILEREGARD"
     gene            complement(5461..6330)
                     /gene="dat"
                     /locus_tag="U0280_002053"
     CDS             complement(5461..6330)
                     /gene="dat"
                     /locus_tag="U0280_002053"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HEM2271979.1"
                     /translation="MKVLVNNHLVEREDATVDIEDRGYQFGDGVYEVVRLYNGKFFTY
                     NEHIDRLYASAAKIDLVIPYSKEELRALLEKLVAENNINTGNVYLQVTRGVQNPRNHV
                     MPDDFPLEGVLTAAAREVPRNEQQFVQGGPVITEEDVRWLRCDIKSLNLLGNILAKNK
                     AHQQNALEAVLHRGEQVTECSASNISIIKDGVLWTHAADNLILNGITRQVIIAVAKKN
                     GIPVKEADFTLTDLREADEVFISSTTIEITPVTHIDGVQVADGKRGPITAKLHQYFVE
                     EIVQACGELEFAK"
     gene            complement(6443..7855)
                     /gene="pepV"
                     /locus_tag="U0280_002054"
     CDS             complement(6443..7855)
                     /gene="pepV"
                     /locus_tag="U0280_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HEM2271980.1"
                     /translation="MTEINWQKEVESRKDDFLEDLKGLLRIPSVRDDSKKTEDAPFGP
                     DVKRALDYMIELGKKDGFTAKEVGNVAGHLEYGQGEELVGVLGHVDVVPVGDGWTNGP
                     FEPTLRDGKLYARGVADDKGPTIAGYYALKIIKELGLPLSRRVRIIVGSDEESGMSCV
                     ERYFETEEQPTLGFVPDAEFPIIHAEKGISELDVSFKDGEASGEAAFRLLSVESGERY
                     NMVPDHATAILEDVKDFDKVASAFKTFLANHPVEGTLEENGKSVKINIVGKSAHAMEP
                     NNGVNAGLHLVAFLGKFKLTGAANDFVTFGRDYLFGDSRAVKLGISYEDEESGELTMN
                     VGVIRYDVAEGGKYGLNFRYPVTANMDKLKNKMQTVVYEYNAQYTHYEDSKPLFVPKD
                     HPLIQVLQEVYTKQTGEEATLLAIGGGTYARHMETGVAFGALFPGREDTMHQKDEFSY
                     FDDLLKATAIYAEALYKLAK"
     gene            complement(7930..>8323)
                     /locus_tag="U0280_002055"
     CDS             complement(7930..>8323)
                     /locus_tag="U0280_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM2271981.1"
                     /translation="VKAVIVKDGKFLALKKKGVEGEVFELPGGRMNYGETHGEALFRE
                     VYEETKLQVQPFILYDTWEFFHEDFQISGVIYLVEMPEGGEIELSDEHEEYRFLPLEK
                     ESLNVMDIVFSSRMERWDFEAIKGFMRK"
BASE COUNT         2397 a         1796 c         1391 g         2739 t
ORIGIN      
        1 tagcatcttt taaaaagaat aggaaacact agggaggaaa agcgatgaac tggaaagctt
       61 tcattgcagg cgttggagca ggagcagcgg ctggacacct tgtttatcat tatttactta
      121 gcgataaaac aatttctggg gacgtcatct tagaaaaggt aaaagatgca ttcaagcaag
      181 aaggaccaat cgaaggttct tggattcaac ttaaaaaaca acattacaaa aaattcgcga
      241 ttgatacttt cgtttaccac ggcggaatca cttgtattcg cgaaggcgag aagaagcaat
      301 tcgaatttat cgcagacgct aacacaggaa caatcatcga cgtatattta gcttaaaaaa
      361 taaaaacgat tccccaagtg gggagtcgtt ttttagcgga taaaactatc tattttcttt
      421 ttaattacca cttcatctgt ttcaccttgt tcaattaact ccttcatttg ttctgtgtag
      481 attaattttg cggcagcatc catcgctttt ttcaccgctg ctatttgttg cataatagtt
      541 tctaaatcac gctcttcttc tgtcatcgtt tttatagaac gtacatgtcc ttctatctta
      601 gcgaatcgcg ttaccagcgc tttcttttgc tcgatttcca tatatacccc cttatagtat
      661 accacacgac aaccccctac ccaggatatc atattggcta ttttaaagcg tttataaata
      721 caattataac acaaaataaa aataccctca aaaaaaagaa gtgacttctc acttcttaat
      781 ttcgctgttc tatttttaat tcggcttcta tttttccatt tccgtccatt tgaactgctc
      841 gaaatctggc gtcatggtat gataaaaacc aataattttc accaaaagtt tgtttaaaaa
      901 tttcttgttt ggcagagata gaagtcattg gataatcatc ataagcagtg acccaaagca
      961 cattttgatg cgcaaatgtc gggaaaatat ccgccatatg tatcgctttt tctccgtccg
     1021 attctatcca tacaactgaa tgcccattac tatgtccacc tgtgtgcgtc attttaatcg
     1081 catcgttgaa ttctttttct ttggtaaatg tatgaatttg tcctgctatc gtttgccagt
     1141 tttcttgcca gtatgttgct tttgaacgaa tgtttgggtg tttcatttcc tcccattccg
     1201 ttttggaagt ccagatttcc gcattgggaa agatggaata aaaactcccc tcttccgaaa
     1261 caccggtcag gcctaacaca tgatcgaagt gcaaatgcgt catcaaaaca aaatcaatgt
     1321 cttctggagc gatagataat tgcgccaaat cttccagtac aaacgattct tccgtcacac
     1381 cgtaattccg tttttgtttt tctgtaagcc gtctgttccc tagcccgcta tcaattaaat
     1441 aatttttccc taagtactga aaaaacatcg gatcggttac gttagctaat tgatttttgt
     1501 catttgcggg atattttttc tcccataaag gttttggtac aacgccaaac attgcgccac
     1561 cgtcaaaatg agtataccct ccgcgtaacc aataaatctt tatttttcca atttgaatgg
     1621 aatccacttt taacgcctcc aattaaaaat aaaaaccaga tgcagcagat gcatctggtt
     1681 atccttgtta atttctatca aattttgctt caagacgata gatggggaat cctttagctg
     1741 aaaatttttc ttcgtattca gttttaatat tcccttcgta atcgctatta tgcaggtcaa
     1801 gagatacaaa agttaataac atattgtatt ctgagaaagc tactagcgaa tattcgaaca
     1861 aactgcgatt atcggttttg aaatgaatct cccccgcttt aggtagcagt cgctcataaa
     1921 tagttaagaa cgttggattc gttagtctac gttttgtatg gcgttttttc ggccatggat
     1981 cggagaagtt taaataaatt tgtgctattt ctcctttttc aaaacattct tctagtaatt
     2041 tagcatctct agcaactaat cgtaaattag aaacgtctgc ttcaatcgct ttatcgagcg
     2101 ccgaaacgag cacgctttcg atcatttcga taccaatata gttaatttcc ggatttgctt
     2161 ttgccatgcc actaataaat tgacctttac cggaaccaat ttcgatatgg attggattat
     2221 catttccgaa tacttcacgc cactgacctt tgaaatcttc tgggtttttg atgtaaattg
     2281 ctgggaattc tttcaatcta tcttttgccc atggtttatg ttttacacgc atctttcttt
     2341 acacctcatc atcttctatt gcattttgaa aaatttgttt tgctcgttca ttggcttcat
     2401 tcgaatgctc ggttatgagt tgcataaccg tttgacaaat tgtataccat tttaatttgc
     2461 gatgtaattc ttcggttaat gtggtgccgt aattagagag ccaacttacc caatcttttc
     2521 gcggaatata ttggtataaa atcattccga tatcattcgc agggtctgca agcatcgcac
     2581 catcccaatc aactagaaac agttcgtttt cttcagaaat aatccaatta ttatggttaa
     2641 catctccgtg acaaactaca taatcgttcg tctgagcagc agagagattc tgttctaaat
     2701 agcggattgc tgctattatt tctttcgata gctcgttatt agcttttgtg tttactttta
     2761 tgagactcaa aagttgatct gcagaaaaat agcagttttc gattttcgct agcatgtgtt
     2821 gcaagttttc tgaatggtgg attttagcta atagttttgc cactcgcggt ccaaccattt
     2881 cttcacgtgt caaaatatgg caattcaccc atttttgagc agtgatgaca tctccattct
     2941 ctacgcgtct cgtccaaact aattttggaa cgatattttc tacagaaagc gcagctaaaa
     3001 aaggcgaaga atttcttttt aaaaagaatt tttcgtcttc atgtgttgca acgaatgcct
     3061 ggccagtttc ccctccggcc ggagctatgt catattctct cccaaaaaag ttatctttca
     3121 tctacatgca caccttttat tagctctttg caacttcatt atccctcgtt tatttcactt
     3181 ccgaacaaat aggtaactat tcatgatttt acttctctta gccttactag tcaagtcaac
     3241 atatgttcgt tatctagatt tttttacaaa tttactttat ttacacaaaa aaagtgcatt
     3301 ccatcaaaat ggaacacact tttttcatta ttttatgctt tttcggtttt agtaacaatt
     3361 ggatccatgg cacttctatt tttttgtata aatagtgcta ggacacaagc aactacagaa
     3421 agaattccgg caactaaaaa ggccgtttca attccgtgga taagaacatg gttggcaata
     3481 tcagttttag ttttgccaat cacatcggct ggtccgagct tagtagcgaa actcgcagca
     3541 cttttagaca taaccgttat aagcgccgct gttccgattg aaccagcaac ttgacgcatg
     3601 gtattaaaca ttgctgaacc atgagatgct agttttaatg gaagcgagtt gagcgctgct
     3661 gtttgcagtg gcatcataac catcgccatc ccagccgaac gaatcgtttg tacaataata
     3721 ataaaagtca atgtagtaga ttcatccaag ttggtaaaca tgaaggtcga tcccgccatg
     3781 ataattaagc caacaagtga taaatattta gccccaaaac ggtcaaacat caccccagtt
     3841 acaggtgaaa gtatcgccgt gacaagcgca cccggcaaga gaacaagccc cgattctagt
     3901 ggtgaaaatc ctctaacagt ttgtaagaaa attggtagta ataacatgcc accaaaaagg
     3961 cccattacaa caaagaaact aatggctgtt gtaagcgcaa aggtaggata tttaaatact
     4021 ctaaagttaa gtagtggcgc tttgttgctt gtttggtaac gaataaatat tcctagcact
     4081 actagaccaa gaataataaa tccagctact ttccatgtta accaatcatg gtctccagca
     4141 ttactaaatc ctaataataa actaccaaac ccgactgttg acatgataac cccaaggata
     4201 tcgagtttcg ggaaagttct ttttccgaca tttttaagta agaaaatcgc tacgacaata
     4261 tcaagaatcg cgaaaggaat aataataaag aataaattgc gccaatcata ttgttgaaca
     4321 atccaccctg aaagtgtcgg accaattgct ggagcaaagt tcatagcaag accaattaag
     4381 cccattgctc gccctcttcg ttccatcggg aataagttta agaccacaac agtaagaagt
     4441 ggcataacaa tcccagcccc aattgcttgt accatacggc cagcaataag catcgtataa
     4501 tctgtcgcaa atccgccaat tgcagtacca atcgcaaagg taatcatcgc aaataagtaa
     4561 agctgacgcg ttgtaaatcg ttcaattaaa aaggccgtca ttggaatcat gacaccatta
     4621 accaacataa atccagtcga taaccattgc ccttgactgg ctgtaattcc aaaatctttc
     4681 ataatacttg gtagcgcgac attcatcaac gtttggttga gaatcgtaac aaaggcgccc
     4741 ataagcataa caatcaaaat accattacgc ttcactgatg tacttgctgc tttcatattc
     4801 aatctcgtgc accttccctt tctaaaatgg taataatctc tcggtgcatt tctagcattt
     4861 cttttaacct ttcttcgcca atctctaaga taggttctaa acggttgaag aatacatgat
     4921 acgtttctgc tgcttttgta gctccttttt cagttaattc taagctgagt gcgcggcgat
     4981 tactttcatt tcttgtacgt tttaaaaatc ccgctttcac taatcgatct acaataccag
     5041 atacagtact tttaccaagc ttcattcgtt ctgctaattc gccaagtgtt aattctgatt
     5101 ctttttgtaa ttctctgatt gcaagtaatt gggttgttgt aatctcccta ttcgccgctt
     5161 cttctgcaag cacgtgatgt gtttttcgtt gtacttcgcg aaaagagaaa ataacctctt
     5221 tcactaattt ttcatccatg acttccctcc atattgttcg ctcccaaata tttcgcatgc
     5281 gaactattag ccttttgaat tatacacctc caaaaaaatt tgtcaatcgc ttaaaaccag
     5341 gcttttcaaa ctgaaagcgg agccaatagc gtaatttcaa cggataaaaa agttatataa
     5401 atttttacat aggtgtcaag acgcaaaaaa accttcctaa aaaaggaagg tttctactta
     5461 ttattttgca aattctaatt cgccacatgc ttgaacgatt tcttctacaa aatattgatg
     5521 aagttttgcg gtaataggtc cgcgttttcc gtcagctact tgcactccgt cgatatgggt
     5581 aactggggta atttcgattg ttgtgcttga aatgaatact tcatcggctt cacgaagatc
     5641 tgttaaagta aaatcagctt ctttgaccgg aataccattc tttttcgcaa cagcaataat
     5701 tacttgacga gtaataccat ttaagattaa attatctgct gcgtgcgtcc ataacacacc
     5761 gtctttaata atagaaatat tggaagctga acactcagtt acttgctctc cgcggtgtaa
     5821 aacagcttct aacgcatttt gttgatgtgc tttgtttttt gctaaaatgt ttccaagtaa
     5881 attcaaactc ttgatgtcac agcgtaacca acgaacatct tcttctgtaa ttactggtcc
     5941 accttgcaca aattgttgtt catttcttgg tacttcacga gctgctgctg ttaaaacgcc
     6001 ttccagcggg aaatcatctg gcataacgtg attacgcggg ttttgaacac ctcgagtcac
     6061 ttgtaaatag acatttcctg tattaatatt attttcagca actaattttt caagtaacgc
     6121 tcgtaactct tctttagaat aaggaataac taagtcaatt tttgctgcac tcgcatataa
     6181 acgatcaatg tgttcattat aagtgaagaa ttttccatta tatagacgaa ctacttcata
     6241 tacaccatca ccaaactgat atccgcggtc ttcaatgtca actgtggcat cttctctttc
     6301 cactaaatgg ttatttacta atactttcat ctcaagtctc tccttgcata gttaattttt
     6361 ggaactatct aaaaacttaa tgaaacaaag aaactgccgc aaaactaagc tttgcagcag
     6421 ttaatttttt caattataac ccttacttcg ctaatttgta aagtgcttct gcataaattg
     6481 cagtagcttt taacaaatca tcaaaatagc tgaattcgtc tttttggtgc atcgtgtctt
     6541 cacggcctgg gaatagtgcg ccgaacgcca caccagtctc catgtggcgc gcataagttc
     6601 cgccaccaat tgctagtaaa gtagcttctt cacccgtttg ttttgtatac acttcttgta
     6661 aaacttgaat tagcggatga tcttttggta cgaaaagtgg tttggaatct tcgtaatgcg
     6721 tgtattgcgc gttgtactca taaaccactg tttgcatttt atttttcaat ttgtccatat
     6781 tagcagttac tggataacgg aaattaagtc cgtattttcc accttctgct acatcataac
     6841 gaataacgcc aacgttcatt gttagttcgc cgctttcttc gtcttcatag ctaataccta
     6901 atttaactgc acgggaatcg ccgaataggt aatcgcgacc aaatgttacg aaatcatttg
     6961 ccgcgccagt cagcttgaat ttaccaagga aagctactaa atgaagacca gcgtttacac
     7021 cgttatttgg ttccattgca tgggctgatt taccaacaat attaatttta acggatttgc
     7081 cgttttcttc taatgttcct tctactggat ggtttgctag gaaggttttg aatgcactcg
     7141 ctactttatc aaagtctttt acatcttcta aaatagctgt tgcgtgatct ggaaccatgt
     7201 tgtaacgctc gcctgattct acgctaagta aacggaaagc cgcttccccg cttgcttcac
     7261 catctttaaa agatacatct agttctgaga tacctttttc cgcgtgaatg attgggaatt
     7321 ctgcatcagg aacaaaacca agtgttggtt gttcttctgt ttcaaaataa cgttccacac
     7381 agctcatacc gctctcttca tcagaaccaa caatgattct aacacggcga gaaagtggta
     7441 atcctagttc tttaataatt tttagcgcat agtaacctgc gattgttggt cctttatcgt
     7501 ccgcaacccc acgagcgtat aatttgccgt cgcgtaaagt tggttcgaat ggtccgttcg
     7561 tccaaccatc accaactggt actacatcca catggcctaa aacgccaact agttcttctc
     7621 cttgaccata ttcaaggtgt cctgctacgt ttccaacttc tttcgctgtg aagccgtctt
     7681 ttttaccaag ttcaatcata tagtcgagcg cgcgtttcac gtctggtcca aacggcgcat
     7741 cttctgtttt tttactgtca tcgcgaacac tcggaatgcg aagaagccct tttaaatctt
     7801 ctaagaaatc atctttgcgt gattccactt ctttttgcca attaatttct gtcataattg
     7861 ttattccctc cttcaaactt atcttctcta ttgtaaactg tttttacgta gcttggaagc
     7921 cggaactccc tattttctca taaaaccttt aattgcttca aaatcccagc gttccatgcg
     7981 cgaagaaaaa acgatatcca tgacatttaa actttctttt tctagtggta aaaagcgata
     8041 ttcttcgtgt tcatcggata attcgatttc gccaccttct ggcatttcta ccaaataaat
     8101 aacaccggaa atttggaaat cctcatggaa aaattcccac gtatcatata aaataaatgg
     8161 ctgtacttgt aattttgttt cttcataaac ttctctaaaa agggcttccc cgtgcgtttc
     8221 accataattc atgcggcctc ctggaagttc aaaaacttct ccttctaccc cttttttctt
     8281 tagtgctaaa aattttccgt cttttacgat aactgctttc act
//
LOCUS       DASDXX010000123         8239 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.123, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000123 DASDXX010000000
VERSION     DASDXX010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8239
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.123"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..887
                     /locus_tag="U0280_002056"
     CDS             <1..887
                     /locus_tag="U0280_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2271982.1"
                     /translation="GITSLSEEEKMSTLHYLENAYHQEPCNEEIVHRLIQFYNQTDKT
                     KKAQEIGQNFLTMNGYDKEILGELSVTFMKEDNMDTYFTLVRHYMEEEKKEATEEIAD
                     NVIPFPKQFVPRRDIREFASWHTTEQLEFLQEARFLEIDSFLPAFKAFLADDSFSPFV
                     QSMIFELMQEKEINEDITVQKIDKHGIFNPSLVPMLADNKFAEAIFAGLAEMLEHSNP
                     SLLEQVIGIIQQHLFMLYPFELEPQEVDVWINAYYKWANAMYGNYCVISDDVNHLAVE
                     EAISIIEELEIRQQNYFI"
     gene            1002..2285
                     /locus_tag="U0280_002057"
     CDS             1002..2285
                     /locus_tag="U0280_002057"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEM2271983.1"
                     /translation="MSVKWEKQEGNVGKLTFEIEQEKVKEGLDRAFVKVRKTLNVPGF
                     RKGKVPRQIFNQRFGEEALFQDALDILLPEVYSAAIDEAGIDPVDTPQVNIESMEKGE
                     TWVLTAEVTVKPEVKLGDYKGLEVEKRETELTTEELEAELKQLQERQAELVVKEDAPA
                     ENGDTVILDFEGFKDGVAFEGGQAENHSLELGSGQFIPGFEEKLVGLKAGDEADIELT
                     FPEEYHAEDLAGQPVVFKVKLHEIKTKEVPALDDELAKDIDEEVETLDELKEKISKRL
                     QEAKEESVAQAKQEEVIAKAVENAEVDIPHAMVHHEADHLMNHFAQDLQAQGLTPELY
                     YQFTGQTEEAMHAQMEKDAEKRVKMNLVLEAIAEAENIEPTEEAIDEEISTLAEKYGM
                     EKDAVRAALGDMSELKSDLKIRKAIDVLLDSAVEK"
     gene            2470..3729
                     /gene="clpX"
                     /locus_tag="U0280_002058"
     CDS             2470..3729
                     /gene="clpX"
                     /locus_tag="U0280_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HEM2271984.1"
                     /translation="MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNE
                     IIEEELGISEFVDFGEVPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETK
                     EDEVELSKSNICLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENIL
                     LKLIQSADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVA
                     SVPPQGGRKHPHQELIQIDTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKD
                     DETYLSRVVPEDLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRM
                     LELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIPSRDDITKCII
                     TEKAARGEEEPQLQLEDGSIIPIKTSA"
     gene            3848..4414
                     /gene="sipX"
                     /locus_tag="U0280_002059"
     CDS             3848..4414
                     /gene="sipX"
                     /locus_tag="U0280_002059"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipX"
                     /protein_id="HEM2271985.1"
                     /translation="MKSENKFFSGAFGWIKIILIALILAFGIRYFLISPVTVNGKSMD
                     PTLHDGEHLFINKVSDPKRFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKEDQLYING
                     KKYDEPYLDSEKEALKNGYLTTDAEGDPNFTMADIPNSDGSLTVPKGELFVLGDNRQV
                     SKDSRYIGFISQDTVLGKVISFGKSLER"
     gene            4449..5018
                     /gene="sipY"
                     /locus_tag="U0280_002060"
     CDS             4449..5018
                     /gene="sipY"
                     /locus_tag="U0280_002060"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipY"
                     /protein_id="HEM2271986.1"
                     /translation="MTDQYDKKPKKKSGAHQLLSWVLVIVAALAIALVIRNFVVAPVK
                     VEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRVIGLPGDKIAF
                     KNGELYLNGKRKVENYLPEGTLTLWNPDPTQKPYIADYTLEDMTGESTVPKGKLFVLG
                     DNRGGSSDSRVFGFIDDSMVNGTVIQFGK"
     gene            5120..5662
                     /gene="sipZ"
                     /locus_tag="U0280_002061"
     CDS             5120..5662
                     /gene="sipZ"
                     /locus_tag="U0280_002061"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipZ"
                     /protein_id="HEM2271987.1"
                     /translation="MKEKNLKRLWSWIWAAVLAVLIAVIIRFYLFVPILVDGISMMPT
                     LHSDDRVIINRFGNVDRFDVIVFRESDGKEYIKRVIGLPGDTVEYKEDQLYINGKKYN
                     EPYLDTYKEKLKDGYLTDDYSSKDQLDGGKIPKDTYFVLGDNRRASKDSRIIGPIPFS
                     KVLGTTPICYWPIEDAKLID"
     gene            5672..6535
                     /gene="ylqF"
                     /locus_tag="U0280_002062"
     CDS             5672..6535
                     /gene="ylqF"
                     /locus_tag="U0280_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEM2271988.1"
                     /translation="MTIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML
                     EEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEK
                     LMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQW
                     IKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYP
                     DRLQNWLKVETVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETVVREIRQQKLGRMS
                     FDFPNWEDEVE"
     gene            6532..7317
                     /locus_tag="U0280_002063"
     CDS             6532..7317
                     /locus_tag="U0280_002063"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEM2271989.1"
                     /translation="MSDSISVIREKLNQVTSEHDPFFRKCMQDERKGVEKLLETTRRK
                     WEKEAQLRNKLEEMKQYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVV
                     GINDSKQLSEAKRDALFETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLT
                     PEPDFVLIDAMPLRYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYD
                     FANNMGYGTKKHLLGLDTIGICPIHRISFAPVKEAKLHFDSLK"
     gene            7451..>8239
                     /gene="dprA"
                     /locus_tag="U0280_002064"
     CDS             7451..>8239
                     /gene="dprA"
                     /locus_tag="U0280_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEM2271990.1"
                     /translation="MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFA
                     ESFFPVDKLAQILMELETAEACFFDDVTLIWILDDAYPALLREIYEAPPILFCKGNID
                     LLQQQAIAIVGTRQMSEYGRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQG
                     TTIAVLGSGVNKVYPKKNELLAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAI
                     GTVIIEAAERSGSLITADIALEQNRQVFAVPGNIFIDTWQGTNYL"
BASE COUNT         2880 a         1288 c         1740 g         2331 t
ORIGIN      
        1 aagggattac ctcgttgtcc gaagaagaaa aaatgagtac gctacattat ttggagaatg
       61 cgtatcatca agagccttgc aacgaggaaa ttgtacatag attaattcaa ttttataatc
      121 agacagataa aacgaagaaa gcgcaagaaa ttggacaaaa ctttttgacg atgaatggct
      181 atgataagga aattcttgga gagctatctg taacatttat gaaagaagat aatatggata
      241 cgtacttcac attagttagg cattatatgg aagaagaaaa aaaagaagca acggaagaaa
      301 tagctgacaa tgttattcct tttcccaaac agtttgtccc aagaagagac attcgtgaat
      361 ttgcgtcttg gcatacgacg gaacaattgg agtttttaca agaagctcgt ttcttagaaa
      421 tagattcatt tttgccagct tttaaagctt ttctagcgga tgatagtttt tccccgtttg
      481 ttcagtcgat gattttcgaa ttaatgcaag aaaaagaaat aaatgaagat attacagttc
      541 aaaaaataga taagcacggt atttttaatc caagtcttgt gccaatgctt gctgataaca
      601 aatttgcgga agctattttt gctggactcg ctgagatgct cgaacatagt aatccaagtc
      661 ttttagagca agtgattggt attattcagc aacatctatt tatgctttat ccatttgaat
      721 tagagcctca agaagtagat gtttggataa acgcatacta taaatgggcg aatgcaatgt
      781 acggtaatta ttgtgttatt tcggatgatg tgaatcactt agcagtagaa gaagctattt
      841 ccattattga agagttagaa attaggcagc aaaattattt tatataatga tatttcttgt
      901 tttcaagtca gggatatctg tgttattatt agtgagtatg gctgaaactt gtcatgagag
      961 taattaaatt gaactaaata gatgatggag ggaattatac catgtcagta aaatgggaaa
     1021 aacaagaagg taatgttgga aaacttactt ttgaaattga acaagaaaaa gtaaaagaag
     1081 gtttagatag agctttcgta aaagtgcgta aaactcttaa tgtgcctggc ttccgtaaag
     1141 ggaaagttcc acgtcaaatt ttcaatcaac gttttggtga agaagctctt ttccaagatg
     1201 cgcttgatat cttgcttcca gaagtatatt ctgcagcaat tgacgaagct ggtattgatc
     1261 cagtggatac tcctcaagta aacattgagt ctatggaaaa aggcgaaact tgggttttaa
     1321 cagcagaagt tactgtaaaa cctgaagtga aacttggaga ttacaaaggt cttgaagtag
     1381 aaaaacgtga aacagaactt acaacagaag aattagaagc ggaattaaaa caattacaag
     1441 agcgtcaagc tgaattagtt gttaaagaag atgcaccagc tgaaaacggt gacactgtta
     1501 tccttgattt tgaaggattt aaagacggcg tagctttcga aggtggacaa gctgaaaatc
     1561 attctctaga acttggaagc ggacaattca ttcctggttt tgaagaaaaa ttagttggct
     1621 taaaagctgg cgacgaagcg gatatcgagc taactttccc ggaagaatat catgcggaag
     1681 atttagctgg acaacctgta gttttcaaag tgaaattaca cgaaatcaaa acaaaagaag
     1741 ttccagctct tgacgatgag cttgcaaaag acatcgacga agaagtagaa actttagatg
     1801 aattaaaaga aaaaatctct aaacgtttac aagaagcaaa agaagaatct gttgctcaag
     1861 ctaaacaaga agaagttatt gcgaaagctg ttgaaaatgc agaagtggac attccacacg
     1921 caatggttca ccatgaagct gatcatttaa tgaatcactt tgcacaagat ttacaagcac
     1981 aaggtctaac tcctgaatta tattaccaat tcactggcca aacagaagaa gctatgcacg
     2041 cacaaatgga aaaagacgct gaaaaacgcg tgaaaatgaa cttagtgctt gaagcaattg
     2101 cggaagctga aaacattgag ccaacggaag aagctattga cgaagaaatt tctacattag
     2161 ctgaaaaata tggtatggaa aaagacgcag ttcgtgctgc acttggcgat atgagcgaac
     2221 ttaaatctga tcttaaaatc cgcaaagcta tcgacgtttt attagatagt gcagtggaaa
     2281 aataagctac gactgattta ataatttcat taaaaaatgg ggggcatgag ttatactcgt
     2341 gtccttctga atgtagaaat atgaatacag atgattggca tttctaataa acaaatgata
     2401 ttattaacac acataggaga tgaaaaaatc gcctataagc aacataccta tgcgaagggg
     2461 tgaaatattt tgtttaaatt taacgacgaa aaaggccaac ttaaatgctc cttttgcgga
     2521 aagactcaag atcaagtacg taaattagtg gccggtccag gtgtttatat ttgtgatgaa
     2581 tgtatcgagc tttgtaatga aattattgaa gaagagctag gtatttctga atttgttgat
     2641 tttggtgaag taccaaaacc tcaagaaatc cgtcatatat taagtgacta tgttattggt
     2701 caagaacgtg ctaaaaaagc acttgctgta gcagtttaca atcactacaa acgtattaat
     2761 tccaatgaaa cgaaagaaga tgaagtagaa ctttcgaaaa gtaacatttg tctaattggt
     2821 ccaactggta gtggtaaaac acttcttgct caaacattag cgcgaattct caatgttcca
     2881 tttgctattg cagatgcgac ttcacttaca gaagctggtt acgttgggga agatgtagaa
     2941 aatattcttc ttaaactgat tcaatcagca gattacgatg tggaaaaagc cgaaaaaggt
     3001 attatctata ttgacgaaat tgacaaagtt gctcgcaaat ccgaaaaccc atctattact
     3061 agagacgttt ccggtgaagg cgtacaacaa gcgctactga aaattttgga aggtactgtc
     3121 gcaagcgttc ctcctcaagg cggtagaaaa catcctcatc aagagttaat tcaaattgat
     3181 acaggaaata ttctatttat cgttggtgga gcttttgatg gaatcgaaca aatcgttaaa
     3241 aatcgaatgg gtgaaaaagt cattggcttt ggcacagata atgcgaaact aaaagatgat
     3301 gaaacttatt tatctcgcgt tgttccagaa gatttactga aattcggttt aattcctgaa
     3361 tttatcggcc gtttaccggt tatagcaacg cttgaacaat tagatgaagc tgcgcttgtt
     3421 tccattttga cagaaccgaa gaatgcttta gtaaaacaat acaaacgtat gttagagctt
     3481 gatgatgtag aacttgaatt cgaaccaact gctctaattg aaattgcgaa agaagcgatt
     3541 gaacgcaaaa ccggagcgcg tggtcttcgt tcgattatcg aacagattat gcttgaagtg
     3601 atgttcgaaa ttccttctcg tgatgacatt acgaagtgta taattactga aaaagcagct
     3661 cgtggtgaag aagaaccgca actgcaatta gaagatggtt ctattattcc aattaaaaca
     3721 tctgcatgat tagaatgcgc gtcgtaattg gcgcgcattt tttctatcaa accagcttgt
     3781 tttactgtaa tatctgactt gtttcgtgct atactttatt aatattaatt ggagaggata
     3841 aaaagacatg aaaagtgaaa acaaattttt ttctggggca tttggatgga taaaaataat
     3901 tctcatcgcg cttatacttg cttttggtat tcgctatttt ttaatttctc cagttactgt
     3961 taatgggaaa tcaatggacc caacacttca tgatggggaa catttattta ttaacaaggt
     4021 atcagatccg aagcgttttg acattattgt atttcctgcg cctgatgagg aaaatgcaga
     4081 gtacattaaa cgcgtcattg gccttccagg agataaagtg gagtacaaag aagatcaact
     4141 ttatattaat ggaaaaaaat atgatgaacc ttatttagat tcagaaaaag aagctctaaa
     4201 aaacggttat ttaaccactg atgcagaagg cgatcctaat tttacgatgg cagacattcc
     4261 aaactctgac ggctctctca ctgtccctaa aggagaactt tttgttttag gagataatcg
     4321 tcaagtaagt aaagatagtc gctacattgg ctttatatca caggataccg tgcttggaaa
     4381 agtaatttca tttggaaaat ccttagaacg ttaatgtgac cctacaggaa gtctaggagg
     4441 agacatagat gacagatcaa tatgacaaaa agcccaagaa aaaaagcggg gcgcaccaat
     4501 tattaagctg ggtgctagtt atcgttgcag cgcttgcaat tgcacttgtg attcgtaact
     4561 ttgtagttgc accagtaaaa gtagaaggaa catctatggt tccaacatat caagatggcg
     4621 atagaatttt cattgaaaaa atttccaagc ctgatcgttt cgacattatt gtgtttgatg
     4681 aacctccaat gattggttca ggagagcatt tcatcaagcg agtgattggt ttgccgggag
     4741 ataaaatagc atttaaaaac ggtgaattat atttaaatgg aaaacgaaaa gtagaaaatt
     4801 acttgccaga aggaacatta accctttgga atccagatcc aacgcaaaaa ccatacatag
     4861 cggattatac gctggaggat atgacaggcg aaagtactgt tccgaaaggg aaactatttg
     4921 tacttggaga taatcgcggc gggagttcag atagtcgcgt tttcggattt attgatgatt
     4981 ccatggtaaa cggtacagtg atacaatttg gaaaataatg tgaagtccgt gaagatactt
     5041 tttcgcggat ttctctatta aatgagcgtt ttttcgttta taataagact gttagtataa
     5101 aatagggcgg tgcgattttt tgaaggagaa gaatttaaaa cggttatggt catggatttg
     5161 ggcggctgtt ctagcagtgt taatagctgt tataatccgt ttttatttat ttgtccctat
     5221 tctcgtcgat gggatatcaa tgatgcctac acttcatagc gatgaccgtg taattataaa
     5281 tcgcttcgga aatgtagatc gtttcgatgt gattgttttc cgagaatcag atggaaaaga
     5341 atacatcaag cgagtgatcg gtttgccggg tgatacagta gaatacaaag aagaccaact
     5401 ttacatcaat ggtaaaaagt ataatgaacc atatttggat acttacaaag aaaagttaaa
     5461 agatggctat ttaacagatg attacagttc gaaagatcaa ctagatggtg gcaaaattcc
     5521 aaaagatact tattttgttt taggtgacaa tcgaagagca agcaaagaca gtcggataat
     5581 tgggccaatt ccatttagca aggtgttagg aacaacaccg atttgttact ggccgattga
     5641 agatgccaaa cttatagatt aggagtatat aatgacaatt cagtggtttc caggtcatat
     5701 ggccaaagct cgccgtgagg taacagaaaa attaaaacta gtagatgtga tttttgaatt
     5761 ggtagatgcg cgtatcccgc tctcttcctc taatcccatg ctagaagaaa ttatccacca
     5821 aaaaagacga gtgattattt taaataaagc agatactgcc gatgaaaaaa caacaaaaga
     5881 atggattgac tactttgctg agaaaggctt gccagcagtt gctgtgaatg ctcaagaagg
     5941 taaaggacta ttcaaaatag aacaagccgc cgaaaaatta atggctgaaa aattcgaccg
     6001 tttaagaagt aaaggtatga agccaagagc aattcgtgcg atgattttag gtattccgaa
     6061 tgttggtaaa tcaacattaa tcaatcgact agcgaaaaaa aatattgcac ggacaggtaa
     6121 taaacctggt gtaactaaag cacagcaatg gattaaagtg ggaaaaacat tagaacttct
     6181 ggatacacca gggattcttt ggcctaaatt tgaagatcaa gaaattggct acaaattagc
     6241 tcttactggt gcaattaaag atgatttact acaaatggaa gaaatcgctg gttacggttt
     6301 gcgcttttta gaaaaacatt atcccgacag acttcaaaac tggctgaaag tagagacagt
     6361 ctctgaagat cctatcgaaa cacttgcttt tattgctgaa aaaagagggc ttctagatcg
     6421 atacaatgat ccagattatt ctcgcgcagc cgaaacggta gttcgagaaa ttcgtcagca
     6481 aaagttaggg agaatgtcgt ttgatttccc aaattgggaa gatgaagtcg aatgagcgat
     6541 tccatatccg ttatccgaga aaaactaaac caagtcacat cagaacatga tccctttttt
     6601 cggaaatgca tgcaagatga gcgtaaaggt gtagaaaaac ttctggaaac tacaaggaga
     6661 aaatgggaaa aagaagcgca attacggaac aagcttgaag aaatgaaaca atatgaaaca
     6721 gatttattcc aacaaggata caagtatatc gctggagtgg atgaagtggg acgtgggcct
     6781 ctcgcaggac cagttgtagc agcagccgtc attttaccag ctgatttttc tgttgtcgga
     6841 ataaatgatt ctaaacaatt gagtgaagca aaacgtgatg ctttgtttga aacgataaaa
     6901 aaagaagcaa ttgctatcgg agtagggatt atagaacatg atgtaattga tcaagtaaat
     6961 atttatgagg caacgaaact tgctatgcgt gaagcgttag atcaattaac accagaacct
     7021 gattttgttc taatagatgc aatgccacta agatataccg aggcagaact atctcttatc
     7081 aaaggggata caaaaagcat ttcgattgct gcagcgtcta tcatcgcaaa ggtaacaaga
     7141 gatagattaa tgcagatgta cgatgaaaag tatcccgggt atgattttgc aaacaatatg
     7201 ggctacggca caaaaaaaca tttacttggt ttagatacaa ttggtatatg tcctatccat
     7261 cgtataagtt ttgcgcctgt aaaagaagca aagttgcatt ttgatagttt aaaataacta
     7321 aatcatatag agaaaaacgt attttcaaca tggaaaatac gtttttttat gccgttttat
     7381 aggttttggt cattttacaa aaaagcccaa tgtttgtaca ctgggagtaa ctattaggga
     7441 ggtgcaacag atggatttta aacaacgaca tacatggctc aaaattgctt cttgtaagtc
     7501 tatttctgct aaaaaaagag ccagcatttg gcaaaaatta acagaattcg accagtatga
     7561 aatgacaaca caaacatttg cagaatcttt ctttcctgtg gataaactcg cacagattct
     7621 aatggagcta gagacagcag aagcgtgctt ttttgatgat gttaccttaa tatggatttt
     7681 agatgatgcc tatccagcgc ttttaagaga aatttatgaa gcgccgccaa ttttattttg
     7741 taaaggaaat attgatttat tacaacaaca agcaattgcc atcgttggta caaggcagat
     7801 gagtgaatat ggtaggaaag cttgtatgaa aattgctagt gaacttgctg agaataagct
     7861 gactatagtt agcgggatgg ctatcggaat cgactctaca gcccatagag ccactttaaa
     7921 taaacaaggt acaacgattg cagtactagg ttcaggtgtc aacaaagttt atccaaagaa
     7981 aaatgaactt ctagcgaaag aaattgtcaa agaaggtttg ttattaagtg agtatttacc
     8041 cgatgaagaa gcgaaaagat ggcattttcc agaaagaaat cgaattatta gcggcttggc
     8101 tataggaaca gtaataatag aagctgccga aagaagcggt tcgttgatta ctgctgatat
     8161 agctttagaa caaaacagac aagtttttgc tgttccagga aatattttta ttgatacatg
     8221 gcaggggacg aactattta
//
LOCUS       DASDXX010000124         8204 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.124, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000124 DASDXX010000000
VERSION     DASDXX010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8204
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.124"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..142
                     /locus_tag="U0280_002065"
     CDS             <1..142
                     /locus_tag="U0280_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TatD family deoxyribonuclease"
                     /protein_id="HEM2271991.1"
                     /translation="KEKSIVYPSNFKQIYADFEEVIPGFEKIVFSNFKRLLFQKDIDK
                     IN"
     gene            325..1110
                     /locus_tag="U0280_002066"
     CDS             325..1110
                     /locus_tag="U0280_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate deacetylase"
                     /protein_id="HEM2271992.1"
                     /translation="MPKLIIDADDFGLSKAINHGIIESYKTGITTSTLLMPNLETAEH
                     AIALAKDHPDLFIGQHTNFLLGKPCTDPAEIPSLVDENGEFHRSKYYRANPELKFQYE
                     DVRTETIAQMERFKALTGHYPEHIDCHSIGDETVDQAFFDIAREFGIHTTLKYSGDKK
                     WPDQEGYLPITKLLESGALPYTNGGVSIENFLNDDFGLLKLAPNEIAEMHFDVGFLDQ
                     FVLDNSSYTLMRCRELATICDVRVRDWLLENGFELITFGDLQR"
     regulatory      1141..1246
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1333..2007
                     /gene="tenA"
                     /locus_tag="U0280_002067"
     CDS             1333..2007
                     /gene="tenA"
                     /locus_tag="U0280_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEM2271993.1"
                     /translation="MFVHGFQEEVGDLWQETLQHPFVQSLADGTLEKEAFYYYLLQDD
                     YYLSHFEKVIEKSVEQAGTAEIAAEMREVQRRLQQSELLMREQFYPRVGLTERDFSVR
                     KPAPTAYHYASHLYRMADFGSFGVTIAALLPCYALYADMGKMYEGARSSEPFYQELLD
                     SYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWR
                     GSVNYV"
     gene            2000..2809
                     /gene="thiM"
                     /locus_tag="U0280_002068"
     CDS             2000..2809
                     /gene="thiM"
                     /locus_tag="U0280_002068"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HEM2271994.1"
                     /translation="MFDFMTLEKVWEKGPLVHNITNIVVANDSANGLLAIGASPIMAS
                     AKEEMDELAKMADVLVINIGTLDGELVTAMKIAGRAANVAGTPVVLDPVGVGATSYRR
                     KVVQELLAEIQFTAIRGNAGELAAIAGEAWEAKGVDAGVGSADVLSIAEKVANEWSTV
                     VIISGEVDVISDGTRFAKVANGSALLPRITGSGCLLSAVCGSFMAVQDDAFRASVEAC
                     ASYAVASEYAEIELERKLPGSFRPQFLDALASWSVEKTRAKAKIQESGEHK"
     gene            2806..3609
                     /gene="thiD"
                     /locus_tag="U0280_002069"
     CDS             2806..3609
                     /gene="thiD"
                     /locus_tag="U0280_002069"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM2271995.1"
                     /translation="MIFKQVLTIAGSDSGGGAGIQADIKTFQERKTFGMSVITAITAQ
                     NTLGVKAVHKIPVEMIREQCDAIAEDFQVSAVKTGMLADAEIIREVARNIRLHNFPNI
                     VIDPVMIAKGGTALLENEATQVLKDELLPLGTIITPNIPEAEEILGEKITTKAEIEQA
                     AKKIFDLGVKAVVIKGGHSEMSEAADFYYDGETTKWLTSERFDTPHTHGTGCTFSACI
                     AAELAKGNSLLDSVMVAKEFITSAIKYPLGIGHGHGPTNHFAYRLEDGK"
     gene            3606..4250
                     /locus_tag="U0280_002070"
     CDS             3606..4250
                     /locus_tag="U0280_002070"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEM2271996.1"
                     /translation="MRAELAVYFIAGTQDIVRGTLPGVLEEALKAGITCFQYREKGAG
                     SLQTASERKEMALECQQLCAKYQVPFIINDDVALALEIGADGIHVGQNDEEIRQVIAS
                     CAGKMKIGLSVHSVSEAEEAERLGAVDYIGVGPIFPTISKADAEPVSGTTILKEIRRA
                     GIKLPIVGIGGINETNSAEVLTAGADGVSVISAITRSDDCYSVIKQLKNPGYPS"
     gene            complement(4277..5692)
                     /locus_tag="U0280_002071"
     CDS             complement(4277..5692)
                     /locus_tag="U0280_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2271997.1"
                     /translation="MHTNTGFPANFLWGGAAAANQFEGAYNVDGKGLSVQDVTPKGGF
                     GHITDGPTPDNLKLEGIDFYHRYKDDVKLFAEMGFKVFRTSIAWSRIFPNGDETEPNE
                     AGLQFYDDLFDELLAHNIEPLITLSHYETPLHLSKTYDGWVNRKMIDFYENYVRTVFN
                     RYKGKVKYWLTFNEINSILHAPFMSGGISTSPDKLSQKDLYQAVHHELVASALATKIG
                     HEIMPEAQIGCMVLAMPTYPLTSNPDDIIAVMEAERKNYFFSDVHVRGTYPGYMKRYF
                     RENNIELDVTEEDLEILKNTVDFISFSYYMSTTETADESKRKAGAGNILGGVQNPYLE
                     ASEWGWQIDPQGLRVVLNEFWDRYQKPLFIVENGLGAIDQLEKDENGNYTVNDDYRIN
                     YLSAHLSQVKEAIKDGVDLMGYTSWGCIDLVSASTAEMKKRYGFIYVDRNNDGTGTLN
                     RYKKKSFGWYKNVIATNGEDL"
     gene            complement(5906..7162)
                     /gene="vip"
                     /locus_tag="U0280_002072"
     CDS             complement(5906..7162)
                     /gene="vip"
                     /locus_tag="U0280_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell invasion LPXTG protein Vip"
                     /protein_id="HEM2271998.1"
                     /translation="MNKYFKNLATVLFTVSLLTTSITALPAMASAYEETHNASTIYIS
                     PLDAPHVGDTKITGKTTALSSFAIAIYTPEGRLTGTFFGTTNAAGTYAVDLSDFTYYD
                     PLGYEASGNVILEKGAMVRSMTETNSDLIKTVTINYNYIQTAINELFLNNDPTGTILA
                     ATDQNAINAVQEQINTVTSSEKETFQEQLNNAQQQLDARIAQEQAAIQAVNQLFLEDN
                     PANSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDP
                     ETDNPEEPVTPVDPATPTPDEPSTPTDPATPTPDEPSTPTDPATPEKPEITTPENPES
                     TVVESDSSENEPEKSADSKIVNNPIQITSQATKTATKQATKQAKSSVTKTTTLPIPKT
                     GDTETTSSILFGTLMLASLALFRRKK"
     gene            7491..8150
                     /locus_tag="U0280_002073"
     CDS             7491..8150
                     /locus_tag="U0280_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAP family protein"
                     /protein_id="HEM2271999.1"
                     /translation="MGSAFSAILSPAVGILISPFPIVGLILILLSNKARINSIFYTVG
                     WIVGNIAIFFIGLFLMSSAVSSSGDQSTLVKVVLIVLGALLILLGAHDFTKRPKNGEQ
                     AATPKWFEKMSNIKPGGAMMFAFVLSAVNPKNMLLSLTAGVSVGALNLSGGQETTATI
                     IFGIIACCSIYIPTIAFLLAGSKLNNALDSTRKWLIQNNSVIMAVLFLFIGLSVISKA
                     F"
BASE COUNT         2249 a         1428 c         2032 g         2495 t
ORIGIN      
        1 aaaagagaaa agtattgttt atccaagcaa ttttaaacag atttatgcgg attttgagga
       61 agttattcca ggatttgaaa agatagtttt ctctaatttt aaaagactat tatttcaaaa
      121 agatattgat aaaattaatt aagggaatta gagtaaatta aggtatttct taatagtata
      181 ttgaaagatt ggaactatgg attaattgtt aaagagattt ggaaagatta gcttatagtt
      241 atgctagttg ataagaggca atcttttgtt aagaaattaa taaatttgta gtctgttttt
      301 ttaattataa taaggaggtt ccccatgcca aaactaatca tcgacgcaga cgatttcggt
      361 ctatccaaag ccatcaacca cggcatcatc gaaagctaca aaaccggcat cacaacatcc
      421 actttactca tgccaaacct agaaactgcc gagcacgcaa tcgctctcgc aaaagaccac
      481 ccagacctat tcatcgggca acacacaaat ttcttactcg gaaaaccatg cacggacccg
      541 gcggaaatcc cgtcacttgt cgacgaaaac ggggaattcc atcgttccaa atattaccgg
      601 gctaaccctg aactgaaatt ccaatacgaa gatgtgcgca cggaaaccat cgctcaaatg
      661 gaacgattca aagcgctaac tggtcactac ccagaacaca ttgactgcca ctcaatcggt
      721 gatgaaacgg ttgaccaagc tttctttgat attgcgcgtg agttcgggat tcacaccact
      781 ttaaaataca gcggtgataa aaaatggcca gatcaggaag gttatttacc aattactaaa
      841 ctattggaat cgggcgcact cccatacaca aacggcggtg tctcgattga gaacttcctt
      901 aacgatgatt tcggattatt aaaattggcg ccaaacgaaa tcgctgagat gcattttgat
      961 gtcggttttt tggatcaatt tgtgctggat aattcttctt atacgttgat gcggtgccgc
     1021 gagcttgcga cgatttgtga tgtgcgggtg cgggattggc ttcttgaaaa tgggtttgag
     1081 cttattacat ttggggattt acagcggtaa aactctatgt tatgatgaac gcaacttaat
     1141 aagaaaaact aggggggccg attctggctg agataggaag gtaatgcttt ctgacccttt
     1201 gaacctgttt gttagtgcaa gcgtagggaa gtgaatgtga aagtgaccgg aaaatttatc
     1261 gcggctgctg tttctttgct tatgctaagg gacagtgggc gcttttttta ttgttcaaaa
     1321 ggaggagttt gagtgtttgt tcacggtttt caagaagaag taggggattt atggcaagaa
     1381 acgttgcagc atccatttgt gcagagtttg gcggatggga cgcttgagaa ggaggcgttt
     1441 tactattatt tgctccagga tgattattac ttgtcgcatt ttgagaaggt gattgagaaa
     1501 agtgtagagc aagctggaac tgcggaaatt gctgcggaaa tgagggaagt acaaaggcgg
     1561 cttcagcaat cagagttgtt gatgcgcgaa cagttttatc cgcgggttgg gctaacggag
     1621 cgcgattttt ccgtgcgaaa accggcacca actgcttatc attatgcttc tcacctttac
     1681 cggatggcag attttggcag ttttggggta acgattgcgg cgcttttgcc gtgttatgcg
     1741 ctttatgctg atatggggaa aatgtacgaa ggggcgcgga gttcggagcc attttatcaa
     1801 gagttgttgg atagttatgt ggatgaaaat tatcaaaaag tggtgttgca gcagaagcgg
     1861 ttggtggaac aggcggcgag tatggcggat gcgcgggagc ttgccctcat gaagcaggct
     1921 tttcaaatta gtgtggaaat ggaatgggca ttttttgata tggcttataa aaaacaaaat
     1981 tggcgtggga gtgtgaatta tgtttgattt tatgacgttg gaaaaggtgt gggaaaaagg
     2041 gccgttggta cataatatta cgaatatcgt ggttgcgaat gactcggcga acgggttgct
     2101 tgcgattggt gcgtcaccga ttatggcttc tgcgaaagag gaaatggatg aacttgcgaa
     2161 aatggcggat gtgctcgtga ttaatattgg gacgctagac ggggagcttg ttacagcgat
     2221 gaaaattgct ggacgtgcgg caaatgttgc tggaacgccg gttgtgcttg acccggtcgg
     2281 tgttggtgcg acttcatacc gtcgtaaagt ggtgcaagaa ttattggctg aaatccagtt
     2341 tacggcgatt cgtggaaatg cgggagagct tgcggcgatt gctggtgaag cttgggaagc
     2401 gaaaggcgtg gatgcgggtg ttggttcggc ggatgtgctg agcattgctg aaaaagtggc
     2461 gaatgaatgg agcacggttg ttattattag cggcgaagta gatgtgattt cagacggaac
     2521 gcgttttgca aaagtggcta atggtagcgc actgcttcca agaattactg gttctggttg
     2581 tttgctcagt gcagtttgcg gtagttttat ggccgttcag gatgatgctt ttcgagctag
     2641 tgtcgaagca tgcgcgagtt atgcggtggc ttctgagtac gcggaaatcg aattagaaag
     2701 aaaacttcca ggttcatttc gaccacaatt tttagatgct cttgctagtt ggtcggtcga
     2761 aaaaacgcgt gccaaagcta aaatccaaga aagtggtgaa cacaaatgat tttcaaacaa
     2821 gtattaacga tagctggttc agattctggc ggcggcgcgg ggatacaagc ggatatcaag
     2881 acatttcaag agcgtaaaac ctttggcatg tccgtcatca cggcaatcac ggcacaaaac
     2941 acgctaggtg taaaagcagt gcataaaatc ccggtagaaa tgatccgcga acagtgcgac
     3001 gcgattgcag aggattttca agtgagcgcc gtgaaaactg gaatgctagc agatgcagaa
     3061 attatccggg aagtggcgcg gaatatccgt ttgcacaact tcccaaatat cgtcattgat
     3121 cctgtgatga ttgcaaaagg tggaactgct ttgcttgaaa acgaggcgac ccaagtgttg
     3181 aaagacgagc ttttgccact tggtacgatc attacgccga atattccaga agcggaagaa
     3241 attcttggtg aaaaaatcac aaccaaggcg gaaattgaac aagccgctaa gaaaattttt
     3301 gatttaggtg taaaagcggt tgttattaaa ggtgggcata gcgaaatgag tgaggcggct
     3361 gatttttact atgatggcga aacgacaaaa tggctgacga gcgagcgctt tgatacgccg
     3421 catacgcacg ggactggttg cactttttcg gcatgtattg cagctgaact tgcgaaaggg
     3481 aattcgcttt tggatagtgt catggttgcg aaagaattta tcacaagtgc gattaaatat
     3541 ccgcttggaa ttggtcacgg tcatggtcca accaaccatt ttgcctaccg attggaggat
     3601 gggaaatgag agctgaacta gctgtatatt ttatcgctgg aacgcaagat attgttcgtg
     3661 gaacgttgcc aggtgtgtta gaagaagcac tgaaagccgg aattacttgt ttccaatatc
     3721 gcgaaaaagg agcaggctca ctccaaactg cttccgaaag aaaagaaatg gcgctagaat
     3781 gccaacaatt atgcgcaaaa tatcaagtgc cattcattat taacgatgat gtcgccctag
     3841 ccctcgaaat cggcgcggac ggcatccatg tcgggcaaaa cgacgaggaa attcgccaag
     3901 ttatcgcgag ttgcgctgga aaaatgaaaa tcggactttc ggttcattcg gttagtgaag
     3961 cggaggaagc agaacgactt ggagcggtgg attatatcgg cgttgggccc atttttccca
     4021 cgatttcaaa agcggatgca gagccagtga gtggaacgac aattttgaaa gaaattcgcc
     4081 gggctggaat taagctacca attgtcggga ttggcggaat taatgaaaca aattcagctg
     4141 aggttctcac agcaggtgcg gacggggtat cggttatttc agcgataact cggtcggatg
     4201 attgctactc cgttatcaag caattaaaaa acccaggtta cccttcttaa aaagggcaaa
     4261 cctgggtttc tcatttttat aaatcttcac cattggtagc aataacgttc ttgtaccaac
     4321 caaaactttt cttcttataa cggtttagcg tacctgtgcc gtcgttgttg cgatcgacat
     4381 agataaagcc gtaacgtttt ttcatttcag cagtggaggc acttacaagg tcaatacagc
     4441 cccatgaagt gtaacccatc aagtcaacgc catctttaat cgcttctttc acttgcgata
     4501 aatgagcgct caaataatta atacggtagt catcatttac tgtgtagttg ccgttttcgt
     4561 ctttttctag ttgatcgata gcgccaagac cgttttctac gatgaaaagt ggtttttggt
     4621 atctatccca gaattcgttt aggacaacgc gcaagccttg agggtcgatt tgccagcccc
     4681 attcggatgc ttctaggtaa gggttttgta cgccgcctag gatgtttcct gcgccagctt
     4741 tgcgttttga ctcgtcagct gtttcggttg tgctcatgta atagctgaag gaaatgaaat
     4801 ctactgtgtt tttaaggatt tctaggtctt cttctgttac gtctaattca atattatttt
     4861 ctctgaaata gcgtttcatg tagcccggat aagttccgcg gacatgaaca tcggagaaga
     4921 agtagttttt gcgctctgct tccataacag cgataatatc atctgggttg gaagttagcg
     4981 gataagttgg cattgctagg accatgcagc cgatttgggc ttcgggcatg atttcgtgac
     5041 caatttttgt agccagcgcg ctcgccacaa gttcgtggtg gacagcttga tataagtctt
     5101 tttgagataa tttatctggg cttgtagaaa taccgccgct catgaatggt gcgtgtaaaa
     5161 tggagttgat ttcattgaaa gtgagccaat attttacttt gcctttatag cgattaaata
     5221 cggtgcggac atagttttca tagaagtcga tcatttttct atttacccag ccgtcgtaag
     5281 ttttcgataa atgaagtggt gtttcatagt gagataaagt aatcagtggt tcgatattat
     5341 gtgctagaag ttcatcgaat aaatcatcgt aaaattgtaa tcctgcttcg tttggctcag
     5401 tttcgtcacc atttgggaag atacgggacc aagcgatgga agtacggaaa accttgaagc
     5461 ccatttcggc aaaaagtttc acgtcatctt tgtagcgatg atagaagtca attccttcta
     5521 attttaagtt atctggtgtt ggaccgtcag taatgtgacc aaatccgcct tttggagtaa
     5581 catcttgaac ggaaagtcct tttccatcga cgttgtaagc gccttcgaat tggtttgcag
     5641 cagcagctcc accccataaa aagttggctg gaaatcctgt atttgtatgc atgttaaaaa
     5701 ctccttttct acattttaaa gtatctatga aaaaaaccaa atacttttct aaatacatgc
     5761 aaaaaaacac ggtacttaga aaaatatttg gttatgcccg gctttcgtcg gtaacattcc
     5821 gatttatagt taaaatatag caaaaataag gaagatagtc aacgaaaaca aataacaccg
     5881 actctatttt gagccggtgt tttgactatt ttttacgtct aaaaagggca agggaagcga
     5941 gcataagtgt accgaataaa atgctagatg tggtttcagt gtcccctgtt ttaggaattg
     6001 gcaaagtagt tgtttttgtt acgctggatt ttgcttgttt tgttgcttgt tttgttgctg
     6061 tttttgttgc ttgactagta atttgaatcg ggttgtttac tatttttgaa tcggcggatt
     6121 tttctggttc attttcgcta gaatcagatt ctactaccgt tgattctgga ttttctggag
     6181 tggtgatttc tggtttttca ggtgttgctg gatctgttgg tgtagatggt tcgtcaggtg
     6241 ttggggttgc tggatctgtt ggtgtagatg gttcgtcagg tgttggagtt gctggatcta
     6301 ctggtgtgac tggctcttct gggttatcag tttctggatc gttttttggt ggtgttacag
     6361 gtttggaacg ttcgtctagt tctgtttgag cttttacaat gttggcctga agcgtatctt
     6421 ttaactcgga agcaggaaga acatcgacaa gcgtttgagc ttggtcaatc aagtcttgcg
     6481 tagtttcagc tttaatcgag tttgctggat tatcctctag gaaaagttgg ttgacagctt
     6541 gtatggctgc ctgttcttgt gctatgcgcg catccagttg ttgttgagca ttattaagtt
     6601 gttcttggaa agtttctttt tctgaactag ttacagtatt aatttgttcc tgcacagcgt
     6661 taatagcgtt ttgatctgtt gcagctaaaa tagttcctgt tggatcatta tttagaaaca
     6721 gctcattaat ggctgtttgg atatagttgt agttgatggt tactgttttg attaaatcgc
     6781 tattagtttc tgtcattgaa cgaaccatgg cccctttctc taaaattaca ttgccactag
     6841 cttcgtagcc aagaggatca taataagtga aatcggataa atcaacagcg taggtaccag
     6901 ctgcattggt agtgccaaag aatgttccag tgagcctgcc ttctggggta taaattgcta
     6961 tggcaaaaga tgataatgct gtggtttttc cagtgatttt cgtgtcacca acatggggcg
     7021 catctaaagg gctaatataa atagttgagg cattatgtgt ttcttcatat gcggatgcca
     7081 tcgcaggtaa ggcagtaata gaagtagtta aaagggagac agtaaataat acagttgcta
     7141 agttcttaaa atatttattc attaagtggt ctttcctcca atagaaataa tcttgtgagc
     7201 ttagcatact attatcagga tgctaaaaat agtagtgaaa tgagttgtat ttccggttta
     7261 tgaagtgaaa ttatgtctaa ttcgccacat ttggctaata actacattgt atcccttaga
     7321 ataaagtctt tttttagtca agcgctccga taaaagcatt tttgttcttc tgagaaaaag
     7381 atataccgac aattgtttgt tagccgggat tagagggaac taggtaaaag gaacggtcta
     7441 atgaagatga ttttttcatt agtaaagata tatacagagg aggagtcagc gtgggatcag
     7501 cgttttcagc tattttgtca ccggcagtgg ggattttgat tagcccattt ccaattgtag
     7561 gacttatttt gattttactt agcaacaagg ctcggattaa cagtattttt tatacggtag
     7621 gttggattgt tgggaatata gctattttct ttattgggtt attcttaatg agttcagcgg
     7681 ttagttcgtc cggagatcag tcaaccttgg tcaaagtggt acttattgtg ctgggggctt
     7741 tacttatact tctaggcgca catgacttta caaaacgtcc taaaaacggg gagcaggctg
     7801 caacaccaaa atggtttgaa aaaatgagca atattaaacc gggaggcgcg atgatgtttg
     7861 cgtttgtgct ttcagcagtg aatccaaaaa atatgttgct ttcacttaca gcgggagtga
     7921 gcgttggggc gctgaattta tctggtgggc aagaaacaac ggcaacgatt atttttggca
     7981 ttatcgcttg ttgttcgatt tatattccta ccattgcttt tttattagct gggagtaaac
     8041 ttaacaacgc attggatagc acgcgtaaat ggcttatcca aaacaattca gtgattatgg
     8101 cggttctttt cttatttatt ggtttgagtg ttattagtaa ggcgttttaa aaataaagct
     8161 gttttttcct ggaacatagg agaaagacag ctttattttt ttaa
//
LOCUS       DASDXX010000125         8176 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.125, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000125 DASDXX010000000
VERSION     DASDXX010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8176
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.125"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            114..992
                     /locus_tag="U0280_002074"
     CDS             114..992
                     /locus_tag="U0280_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272000.1"
                     /translation="MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGS
                     LNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDGQMQT
                     LREMLTEMAHLSREWPEETVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYR
                     EIPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYY
                     FTKFFKRNTGMTFVTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRA
                     MGVAPLKYRKTIYGNN"
     gene            1067..2143
                     /locus_tag="U0280_002075"
     CDS             1067..2143
                     /locus_tag="U0280_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2272001.1"
                     /translation="MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAA
                     AKEFGSENASVYTSYIELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAK
                     TTEEAKSMIEAANRTGKKLTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRA
                     VPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANA
                     WGSWDPNKFTVEDSAFGFITMENGATIVLEASWALNTLDVGEARTSLSGTEGGADMED
                     GLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAEQWLEAIEKNTDPVVKPEQ
                     ALVVTQILEAIYESSKTGQPVYFN"
     gene            2159..2899
                     /locus_tag="U0280_002076"
     CDS             2159..2899
                     /locus_tag="U0280_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2272002.1"
                     /translation="MKAKIALQLWSVKEACEDDFFGTLEKVAEMGYDGVEFAGYYGKS
                     ASEIKAKLAELGLEVAGSHISKEQLEADLENVILFERELGNEYIICPYADFKTKQEWL
                     EFGGRLREITTTIQQAGMHFGYHNHAHELDKLDDEIILDSLLKNVPEMVAELDTYWIE
                     YAGIGVIPFIEKYRNRVPLIHIKDKSRANKESTIIGEGVLDVPGFVKTALQSGTTWLI
                     IEQEAFTQDPLTSVAKGYTYLANVLEEN"
     gene            2901..3623
                     /locus_tag="U0280_002077"
     CDS             2901..3623
                     /locus_tag="U0280_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose utilization protein ThuA"
                     /protein_id="HEM2272003.1"
                     /translation="MTRVTVWNEFLHEKEDDAVLAIYPNGIHGQIASFLEKAGIEAGT
                     ATLEEPEHGLTEEVLANTDVLIWWGHMGHDRVEDRIVDRVQKRVLEGMGLVVLHSGHM
                     SKIFMRLMGTSCDLKWREANERERLWVVDPTHPIAKGIGEFIELDEEEMYGEHFDIPT
                     PDELIFLGWFEGGEVFRSGITYKRGNGRIFYFQPGHESYPTYHHPDIQQVIINGVHWC
                     AEGRKNYPAYGNHQPLEKIGRK"
     gene            3626..4594
                     /locus_tag="U0280_002078"
     CDS             3626..4594
                     /locus_tag="U0280_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2272004.1"
                     /translation="MKLGVFTPLFANLSLDEMLDKVKAAGLDAVEIGTGGNPGNHHCP
                     TDELLASEAARKEYLEKFTSRGLTISAFSCHDNPISPNKEEAAASDEILRKSIKLASL
                     MNVPVVNTFSGTAGDSDDAKAPNWPVIPWPTVYSDIKTWQWETKLIPYWKEIGELAAA
                     SGVKIGIELHGGFLCHTPYTILKLREETNDAIGVNLDPSHLWWQGIDPVGAIKILGKA
                     GAIHHFHAKDTYLDQDNINMYGLTDMQPYGDVQTRSWTFRSVGCGHSLTEWSDIMSAL
                     RTYGYDYVVSIEHEDPLMSIDEGFDRAVTNLQSILIKDKPLDMWWA"
     gene            4617..5666
                     /locus_tag="U0280_002079"
     CDS             4617..5666
                     /locus_tag="U0280_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2272005.1"
                     /translation="MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAA
                     AQKGLKIYESFEAVLADEKVDAVLIATPNDSHKELAITALEAGKHVVCEKPVTMTSED
                     LLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD
                     WRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFEN
                     GITAQIEVGTTNFIKLPRWYVKGTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQ
                     GLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPIVQNEEVYQVLKLIE
                     AIFEAAETNRTIHSI"
     gene            5760..5945
                     /locus_tag="U0280_002080"
     CDS             5760..5945
                     /locus_tag="U0280_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEM2272006.1"
                     /translation="MSEDKGMKDKAKGLKDKVVGDAKDKFGKATDDKGKQVEGKAQKA
                     KGEVEDKTGDAKKKLSE"
     gene            6076..7977
                     /locus_tag="U0280_002081"
     CDS             6076..7977
                     /locus_tag="U0280_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2272007.1"
                     /translation="MTKKVLPKEASEFTKKVNEKVKKALPFENTKDFEDAKKGFIGTW
                     DHVKVDTEDGHAVWDLDDYKFIEGEAPDSVNPSLWRIAQLNMTNGLFKVTDRVYQVRG
                     FDMSNTTIMEGDTGLVITDTLMSVETARAALELYFEHRPKKPIKAIIYTHSHADHYGG
                     VAGLISKEDVTSGKVALIGPEGFMEAAVSENIFAGNAMIRRAEFMYGSRLSRGELGQV
                     DAGLGKTASKGHMSLLAPNDTITFDHEKRVVDGIEVEFLMAPNTEAPSEHMMYFPQFK
                     LLNIAEDAVHNLHNILTLRGAQIRDAYEWWKDIDKAIRAFGDKYEVCIGQHHWPTWGN
                     EEINDMLIHQRDAYKYMHDQTLHFINKGLTAIEVAEAVKFPPELEEKWYLRGYYGTLN
                     HDVKAIYQFYLGWYNGNPADLYPLPPEDVAKKYVEFMGGVDEVVKKARVSYEAGEYRW
                     VAEVVKHAVFADGENGEARALLADALEQLGYQSESGPWRNVFLAGADELRNSVPDEVI
                     SGVTLDIVEGMPFNLILDYMGIRLNGERSIGKRISMNWKLTDVDENYHLLVNNSVLIY
                     REGEVDDKADLTLTTTRDTFNHIFGGVKSFEAAFADQTAKLEGDAKKFGEFASLLDEF
                     NPVFNIVTP"
     gene            complement(8031..>8176)
                     /locus_tag="U0280_002082"
     CDS             complement(8031..>8176)
                     /locus_tag="U0280_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272008.1"
                     /translation="QKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNVPDKIKYL
                     AEK"
BASE COUNT         2723 a         1326 c         1856 g         2271 t
ORIGIN      
        1 aaaaactttt taatgaaatt ccctatgaat cattaatttt ataaacttaa gaagatagtt
       61 taacggctgt cttctttttt atgctaaaat gaaagaaaaa aaggagtttc actatgagcg
      121 aatacttgga aattccagaa ttaaataaag cttttccttt tcgttcgttt attaatgaag
      181 gggaagttct tgtttatcca cactggcaca aagagattga aattatttat gcgctaaaag
      241 gtagccttaa tcttggcgtt aatgatatgc caattcaatt aaaagaagga gaaattcaag
      301 taataaatgg cggagatgtg cattattttt tagcttcgcc gagtagtgag cgcatcgtta
      361 tccaatttga tttaagttta tttcaagaag aaatgcaaat ggatggccaa atgcaaacgt
      421 tgcgcgaaat gcttacagaa atggcacatt tgagcaggga atggccagaa gagacggttg
      481 ctaaaatgca atctttaatt atgaatatcc attctgagtc aagcggggaa aagcctggga
      541 agcattatat tctaaaagca gacctactag cgattatcgg cttgatatac cgggaaattc
      601 ctcaaatcaa aactcaaccc gatagtgtga tttcagaaga tgcagtctta aaatctcaag
      661 aaacattaca taaattagat caaatttttt cctatgtcga gaaacactat caagaaccgg
      721 tcagcttaca agaagtagct gattacactg gatttagcac gtactatttc acaaaatttt
      781 tcaagcgaaa tactggtatg acgtttgtga cttttttaaa tgattaccgc ctgaataaag
      841 caaaatggat gttgttaaat gaagctttcc ctgttacaga agtggccgaa ctagcaggat
      901 ttagtagtgt aaaaaccttt catcatgcct ttaaacgagc aatgggtgta gcaccattaa
      961 aatacagaaa gacaatatac gggaataatt aagcaataaa ataggaagat ttacctctag
     1021 tagttttgta tgatgtaact atcaaaacta ttggaggttt tttattatga cattaaaagt
     1081 tggaattata ggttgtggag gcattgcaaa cgggaagcat atgccaagtt tattaaaagc
     1141 tgagaaagca gaaatggttg ctttttgcga tatcgtttta gaaaaagcgg aagccgcagc
     1201 aaaagaattt ggtagtgaaa atgcaagcgt atacacaagc tatatagaat tactccaaga
     1261 taaatccatc gatgtcatcc atgtttgtac accaaatatt tctcatgcag aaatttctat
     1321 tgcggctatg gaagctggaa agcatgttat gtgcgagaaa ccaatggcaa aaacaaccga
     1381 agaagcgaaa agcatgattg aagctgctaa tcgtacagga aaaaaactaa caattggtta
     1441 ccaaaataga ttccgcaaag actcggatta cttgcaccaa gtttgcgaga acggcgaact
     1501 aggcgatatc tattatgcaa aagcaaaagc gattcgtcgc cgagctgtac caacttgggg
     1561 tgtgttttta gatgaagaag cgcagggtgg cggaccactt attgatattg gaacacatgc
     1621 gcttgattta acgctttgga tgatggacaa ttataaaccg aaatatgtag taggaaacag
     1681 ttatcataaa cttgccaaaa aagaaaatgc agcaaatgca tggggctcat gggatccaaa
     1741 taaatttact gtagaagatt ccgcgtttgg ttttatcaca atggaaaacg gcgcgacgat
     1801 agtattagaa gcaagttggg cgcttaacac actcgatgtc ggtgaagcaa gaacatctct
     1861 atcgggaaca gaaggcggcg cagatatgga agacggttta cgaattaacg gcgaagcgca
     1921 cagccaaatg tatgaaaaga aaattcaatt agaagcaggc ggcgttgatt tttatgatgg
     1981 aactggtgat gacccagcgt taatcgaggc agaacaatgg ttagaagcaa ttgaaaaaaa
     2041 tacagatcct gttgtaaaac cagaacaagc acttgttgta acacaaatct tagaagctat
     2101 ttatgaatca tcgaaaacag gacaaccagt ttattttaat taaggaggaa gtgcctttat
     2161 gaaagcaaaa attgcgttac agttgtggag tgttaaggaa gcttgtgaag atgatttctt
     2221 tggaacgtta gaaaaagtgg cggaaatggg ttatgacggt gtggagtttg ctggttatta
     2281 cggcaaatcc gccagtgaaa ttaaagcgaa attggctgaa ctcggactag aagtagcagg
     2341 atctcatatt agtaaagaac agcttgaagc agacttagaa aatgtcattt tgttcgaacg
     2401 cgaattggga aatgaatata ttatttgccc atatgcagat tttaaaacga agcaagaatg
     2461 gcttgaattc ggcggcagac ttcgtgaaat tacaacaact attcaacaag ctgggatgca
     2521 ttttggttat cataatcatg ctcacgaatt agataaatta gatgacgaaa ttattttgga
     2581 cagtttactt aaaaatgtac cagagatggt tgcagaatta gacacttact ggattgagta
     2641 tgcgggaatt ggggttattc cttttatcga aaaatatcgt aaccgggtac cactaattca
     2701 tattaaagat aaatcgagag caaacaagga aagcactatt atcggtgaag gtgttttgga
     2761 tgtgcctggt tttgttaaaa cggcgcttca atctggaaca acctggctga ttattgaaca
     2821 agaagcattt acgcaagatc cgctaacaag tgtggccaaa ggttatacgt atttagcgaa
     2881 tgtattggag gagaactaat atgacacgtg taacagtatg gaatgaattt ttacatgaaa
     2941 aagaagatga tgctgtgttg gctatttatc cgaacggaat tcatgggcaa atcgctagct
     3001 ttctagaaaa agcaggcatt gaggcaggca cagctacttt agaagaacca gaacatggcc
     3061 ttactgaaga agtattagcg aatacggatg tactgatttg gtggggacac atggggcatg
     3121 accgcgtaga agatagaatt gtcgatcgtg tgcaaaaacg cgtgttagaa ggcatgggac
     3181 ttgtcgtact acattctggt catatgtcga aaatctttat gcgcctaatg ggaacaagct
     3241 gtgatttaaa atggcgtgaa gcaaatgaaa gagagcgcct ttgggtagtt gacccgacgc
     3301 atccgattgc aaaagggatt ggtgaattta tcgagttgga cgaggaagaa atgtacggcg
     3361 agcattttga tatcccgaca cctgatgaac taattttctt aggttggttt gaaggcggcg
     3421 aagttttccg aagcgggatt acctacaaac gaggaaatgg tcggattttc tacttccaac
     3481 caggccatga atcctatcca acctatcacc atccggatat tcagcaagta attattaacg
     3541 gcgtacattg gtgcgcggaa ggtcggaaga attatccggc atacggaaat caccaaccac
     3601 ttgaaaaaat agggaggaaa taaacatgaa attaggcgta tttacaccat tatttgcaaa
     3661 tttatcattg gatgaaatgt tagataaagt aaaggcggca ggacttgatg ctgtcgaaat
     3721 cgggacgggc gggaaccctg gaaatcatca ctgtccaacc gatgaacttt tagcgagtga
     3781 agcagcgcgg aaggaatatt tagaaaaatt tactagtcga ggattaacaa ttagtgcttt
     3841 tagttgccac gataacccga tttctcctaa taaagaggaa gcggctgcat ctgatgaaat
     3901 tttgcgcaaa tcaatcaaac tagcctcttt aatgaatgtt ccggttgtta atacattttc
     3961 tggaacagcg ggagatagtg acgatgccaa agcgccgaac tggccggtta ttccttggcc
     4021 aactgtttat agcgatatta aaacttggca atgggaaaca aaattaatcc cttactggaa
     4081 agaaattggc gaacttgcag cagccagtgg cgttaaaatt ggtatcgaac tgcatggtgg
     4141 tttcttatgc catacgccat ataccatttt aaaactgcgg gaagaaacaa atgatgctat
     4201 cggggttaat ttagacccaa gtcatttgtg gtggcaagga attgacccag ttggcgctat
     4261 caaaatctta ggaaaagctg gagcgattca tcatttccat gctaaagata cgtatttaga
     4321 tcaagataat attaatatgt acggtttaac ggatatgcaa ccatatggtg atgtacaaac
     4381 gagaagttgg acattccgtt cggttggttg tgggcacagt ttgacagaat ggtcggacat
     4441 tatgagcgcg cttagaacat atggttatga ttatgtagtc agcatcgagc acgaagatcc
     4501 attaatgtcg attgatgaag gattcgaccg tgctgttaca aacttacaat cgattttaat
     4561 taaagataaa ccactggata tgtggtgggc ttaacgataa gaaagggtgt cttaggatga
     4621 aaaaatatca attagtaatt attggttacg gcgggatggg aagctatcat gtaacgcttg
     4681 catcggctgc taataatttg gaagttcacg gtgtattcga cattctagca gaaaaacgtg
     4741 aagccgctgc ccaaaaaggt ttgaaaatct atgaaagttt tgaagcggtt ttagcggatg
     4801 aaaaagtaga tgcagttctt atcgcgacac cgaatgatag ccataaagaa ctggcgatta
     4861 ctgcacttga agcaggcaag catgttgttt gcgagaaacc agtgacaatg acaagcgaag
     4921 atttactagc aattatggat gtggctaaaa gagtaaataa acattttatg gtgcatcaaa
     4981 atagacgttg ggacgaagat ttcctgatta ttaaagaaat gtttgaacaa aaaacgatcg
     5041 gtgaaatgtt ccacttagaa tcacgtgtcc acggagcaaa tggtattcca ggagattggc
     5101 gtcatttgaa agcacatggc ggcgggatgg tacttgattg gggtgtgcat ctacttgacc
     5161 aattgttatt cctagtagat agtaacgtga aatctgtatc tgctaatcta agttttgcgc
     5221 ttggggatga agtcgatgat ggcttcgtca cgttcattac tttcgaaaat ggcattaccg
     5281 ctcaaattga ggtaggcaca acgaacttca ttaaattacc tcgctggtat gtcaaaggta
     5341 cagaaggaac tggaattatc cacgactggg atttaagcgg ggaaatcgtc aaaccaaccg
     5401 cactcgctaa aacgtctgag ccaacgccaa ttaaagcagg gcaagggctt acaaaaacaa
     5461 tggcaccacc aagcgaagaa gcaaccaata cattatcgct tccagcacct gccaaattag
     5521 ctccatcttt ttataataat tttgtcgatg ttttaaataa tacgagtgaa ccaatcgttc
     5581 aaaatgaaga agtttatcaa gttttaaaat tgattgaagc catatttgaa gcggctgaga
     5641 caaatcgaac tatccattct atttaaaaaa gatgttttag cttcctaaac tgtggaaaac
     5701 actactatgg agataaagaa ttcttcatta gaaaatattc taattaggag gcaatatcaa
     5761 tgagcgaaga taaaggcatg aaagacaaag caaaaggact taaagacaaa gtagtaggtg
     5821 acgcaaaaga caagttcggt aaagcaacag atgataaagg caaacaagta gaaggtaaag
     5881 ctcaaaaagc taaaggcgaa gtagaagata aaactggcga cgctaaaaag aaattatccg
     5941 aataagttaa aaagagcggc ttgaattttt caagccgctc tttttttggt ccaataatag
     6001 caaaaggttt tgaataattt tacggaggta taaaaagaaa gtatgtgaaa ataaacgtgc
     6061 aggaggaaac cgataatgac aaaaaaagtc ttaccaaaag aagcgtctga atttacaaag
     6121 aaagtgaatg agaaagtaaa aaaagcttta ccatttgaga acacgaaaga ttttgaagat
     6181 gcaaagaaag gctttattgg cacttgggat catgtaaaag ttgatacgga agatggccat
     6241 gcagtttggg atttggatga ttataagttt atcgaaggag aagcacctga ttctgttaac
     6301 ccaagtttgt ggcgtatcgc tcaacttaat atgacaaatg gtttattcaa agtaacggac
     6361 cgggtttatc aagtacgcgg ctttgatatg tcgaatacga cgattatgga aggcgatact
     6421 ggccttgtca ttacagatac attaatgtcg gttgaaactg cccgtgcggc gcttgaatta
     6481 tactttgagc atcgtccgaa aaaacctatt aaggcgatta tttatacgca ttcccatgcc
     6541 gatcattacg gcggtgtagc gggtctaatt agcaaagaag atgtaacctc tggaaaagtg
     6601 gcacttattg gacctgaagg ctttatggaa gcggcggtca gcgaaaatat ttttgctgga
     6661 aatgcaatga ttcgtcgtgc ggaatttatg tatggtagcc gtttgtcacg cggggaatta
     6721 ggtcaagtgg atgcaggact tggtaaaaca gcgtccaaag gccacatgtc cttacttgct
     6781 ccaaatgata ctattacgtt tgatcatgaa aaacgcgtgg ttgatgggat tgaagtggaa
     6841 ttcttaatgg cgccgaatac agaagctcca tcagaacata tgatgtattt cccgcaattt
     6901 aaactactta atattgcaga agatgctgtt cataacttgc ataacatttt aacattacgt
     6961 ggtgcgcaaa ttcgtgacgc ttacgagtgg tggaaagata ttgacaaagc gattcgtgcg
     7021 tttggtgata aatatgaagt ttgtatcggt caacatcact ggccaacgtg gggtaatgaa
     7081 gagattaatg acatgcttat tcaccaacgt gacgcttata aatatatgca tgaccaaacg
     7141 cttcatttta ttaataaagg attaactgcc attgaagtgg ctgaagctgt gaaattccct
     7201 cctgaactag aagaaaaatg gtatttacga ggatactacg gcacgcttaa ccatgatgtt
     7261 aaagcgattt atcaatttta tcttggttgg tataacggaa atcctgctga cctttatccg
     7321 ctacctccag aagatgtggc gaaaaaatac gtcgagttca tgggtggcgt tgatgaagta
     7381 gtgaaaaaag cgcgtgtatc ctatgaagcg ggtgaatatc gctgggttgc ggaagttgtc
     7441 aaacatgcgg ttttcgcaga cggagaaaac ggagaagcaa gagctcttct tgcagatgcg
     7501 ttagaacaac ttggctatca atctgagtcc ggaccatggc gtaatgtatt tttagccgga
     7561 gcagacgaac tgagaaattc tgtcccagat gaagttattt ctggtgttac actggatatt
     7621 gttgaaggta tgccgtttaa cttgatttta gattacatgg gtattcgttt aaatggggaa
     7681 agatccatcg gtaaacgtat ctccatgaac tggaaattaa cagatgttga tgagaattat
     7741 catttacttg taaataattc cgtacttatt tatcgtgaag gtgaagtaga cgataaagct
     7801 gatttaactt taactactac tcgtgataca tttaatcata ttttcggtgg tgtgaaaagc
     7861 tttgaagcag catttgctga ccaaacagct aaattagaag gagacgcgaa gaaatttggg
     7921 gagtttgctt ccttgttaga tgaatttaat cctgtcttca atattgttac accttaataa
     7981 aaacaaaaaa cgctttgttt agccttttat caggctataa caaagcgttt ttatttttca
     8041 gctaaatatt taattttatc tggtacgttt ttgatttttt tataattaac aaccattttg
     8101 ttctcgccaa caagtacttt gaattgctcg ttcttagtta attctttttc tgagtagaaa
     8161 gttagttgtt tttgtt
//
LOCUS       DASDXX010000126         7814 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.126, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000126 DASDXX010000000
VERSION     DASDXX010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7814
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.126"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(17..1462)
                     /locus_tag="U0280_002083"
     CDS             complement(17..1462)
                     /locus_tag="U0280_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEM2272009.1"
                     /translation="MWKLAGNSNLPIYLQIVDLIETKIINGELLPEEKLPPERQLAEM
                     FGVNRSTVVRALDELTARAVIIRKQGSGTTVNAEKWGLFAGQSTNWRHYLTQGGFTPA
                     VPYIRQAGVMERADSDQVIDAASGELPLEMTPKMETPSLSWQSFIAEEQQEDEAGYKP
                     LRETIQKQMKEAYGLQTRPEQIFITSGAQQALFLITQCLLKPGDAVAIESPSYFYSLS
                     LFQSAGLRIFALPMDEDGVIISELRDLYHKHRVKMVFVNPTFQNPTGLVMSLERRKEL
                     VKICAHLQIPIVEDDPFSELAALDSQVPAPLKQLDTDNVLYIGSLSKIMGSTTRIGWL
                     IGPTAVIERLALARQEMDFGLSIFPQVLANSVLNTPGYKVHLQQLHHVLKQRRDDLIE
                     AFEAILPNDVVFIKPKGGFHLWVKLPVEFRSIRDFDIFLANDLLVMPGFLFGVKEAVI
                     RVTYARLEKTEARRIAEIIKQILIEKKCEEA"
     gene            1586..2473
                     /gene="pdxS"
                     /locus_tag="U0280_002084"
     CDS             1586..2473
                     /gene="pdxS"
                     /locus_tag="U0280_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEM2272010.1"
                     /translation="MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVM
                     ALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYI
                     DESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVE
                     AVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVAT
                     PADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPM
                     KGIEMSRLNPEDRMQDRSI"
     gene            2475..3041
                     /gene="pdxT"
                     /locus_tag="U0280_002085"
     CDS             2475..3041
                     /gene="pdxT"
                     /locus_tag="U0280_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HEM2272011.1"
                     /translation="MKKIGVLAIQGAVDEHIQMIESAGALAFKVKHSSDLDGLDGLVL
                     PGGESTTMRKIMKRYDLMEPIRAFASEGKAIFGTCAGLVLLSKEIEGGEESLGLIEAT
                     AIRNGFGRQKESFEAELNIEAFGEPAFEAIFIRAPYLIEPSNEVAVLATVENRIVAAK
                     QANILVTAFHPELTNDNRWMNYFLEKMV"
     gene            complement(3080..4057)
                     /gene="pta"
                     /locus_tag="U0280_002086"
     CDS             complement(3080..4057)
                     /gene="pta"
                     /locus_tag="U0280_002086"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM2272012.1"
                     /translation="MSDLFTTIKGQVTGKNVRIVLPEGTDERIVGAAARLQKENIVKP
                     ILLGNKAEIEAKAKEIGVSVEGIAIHEPATDPLFDELVAAFVERRKGKATEEAARKML
                     VDPNYFGTMLVYTGKAEGLVSGAAHSTGDTVRPALQIIKTKPGVSKVAGAMIMVRGEE
                     RYLFSDVAINIAPVAADLAENAIVSAETAEIFGIDPRVAMLSFSTKGSAKSDETEKVV
                     EATALAKEKAPELTLDGEFQFDAAFVPTVAEKKAPGSVIKGDANVFIFPSLEAGNIGY
                     KIAQRLGNFEAVGPILQGLNAPVNDLSRGCNTDDVYNLTLITAAQAVNK"
     gene            4377..4604
                     /locus_tag="U0280_002087"
     CDS             4377..4604
                     /locus_tag="U0280_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEM2272013.1"
                     /translation="MQLNETAVGEKVRISELKIENAMLKRRLLALGCDEGCDICIKQK
                     GLFGGPCTFETKGQYISIRQCDACAIMVERR"
     gene            4601..6595
                     /gene="feoB"
                     /locus_tag="U0280_002088"
     CDS             4601..6595
                     /gene="feoB"
                     /locus_tag="U0280_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEM2272014.1"
                     /translation="MSQNTYCLLGNPNTGKTSLFNALTGSYEYVGNWSGVTVEKKVGT
                     LRSKTGKLIDLPGIYDLNPISRDETVVTRFLLEEKFDCMLNIVDSSQIERNLNLTIQL
                     LEFGAPVVMGLNMIDVAAGRGIHLNIQNLAKQLRIPILPVVARSGKGTDDILSTLSEK
                     HVAPAIPLILPYGEPAEKAITEIQALIKDMIPAKQSRWLAVQFLSKNEVTEEFLATCP
                     ALEQLKHIRTELEIALDGKLENHFHQVRVNYIHDICLTSVEYTRHSDIPLSDKLDKIF
                     THKFFGIPIFLGIMWLIFQITFTWVGAPLSDLLDGFIGGPLTDSVTSFLTAIGASGFI
                     TDLVADGIIAGVGGVLVFVPQILVIFFFISVLEDSGYMARIAVVMDRVMEIFGLNGKA
                     FIPMIIGFGCNVPGIMAARSIEESKERTLTILVSPFMSCSARLPVYALFVGVFFEKHQ
                     ALVVLSLYVIGILMALIVTKILSKTLLKKDNSVFVVELPPYRLPSLKTLWRSTWEKGK
                     GFLRKAGTFIFAGSVIIWLLNYAGPSGLDVPMGESFLAIIGGMLAPLLVPLGFGTWQA
                     GATLIPGFLAKEVVVSTMAIIYAVGESSLGSIVSTFYTPLSAYCFMLFILLYIPCLAT
                     VAAIRKETSSWKWTAFAVAYPLVTAYVLVFLVYQIGSLFV"
     gene            6602..6784
                     /locus_tag="U0280_002089"
     CDS             6602..6784
                     /locus_tag="U0280_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HEM2272015.1"
                     /translation="MFFVSIMVNLLLGGAIFGYTIYAIIKFIKRSKQGKCGGCELEKA
                     CNCESDEHTNLDHIFK"
     gene            complement(6814..7668)
                     /locus_tag="U0280_002090"
     CDS             complement(6814..7668)
                     /locus_tag="U0280_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009929107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM2272016.1"
                     /translation="MALKIKWIIAISMIIVLLVVGWFLGTRLTVKKYEVSSAKIEKEI
                     KLVQLSDLHFSEFGDKNENLLHKVANLNPDVIAITGDLFDRQGDSVPKELIKKLTKIA
                     PVYFSPGNHEYDVKNAYEDDYKPFLEKIGVVNLEDQTATIDVGGQKFQMSGLRSSANL
                     DYDYPYYKEGLAEIKKQQDSTYYQILLSHMPDYFELYVENGFDLTLSGHTHGGIVRIP
                     YTNIGAIAPGPQRTLLPDYVYGEHSKDGKTMIISAGLGAGSLHQKAFPRLGNPYEIVA
                     VTIKPATN"
BASE COUNT         2226 a         1633 c         1509 g         2446 t
ORIGIN      
        1 gcaagatagc tttaaatcaa gcttcctcgc actttttttc tattaatatt tgctttatta
       61 tttcagctat acgtctcgct tctgtcttct caagccgcgc ataagttaca cggataaccg
      121 cttcttttac cccaaataaa aatcctggca taacaagtaa atcattcgct aaaaatatat
      181 caaaatcacg aatcgagcga aattcgactg gtaatttcac ccataaatga aaaccacctt
      241 ttggcttaat aaatactaca tcattcggta aaatggcttc gaaagcttcg attaaatcat
      301 ctcggcgctg ttttaatacg tggtgcaatt gctgtaaatg caccttgtaa ccgggcgtat
      361 tcaaaacact atttgccagt acttgtggaa aaatacttaa accaaaatcc atctcttgcc
      421 tggcgagcgc gagccgttca attactgctg tcggaccaat aagccaacca attcgtgtag
      481 tggatcccat aatttttgag agcgagccaa tgtataacac attatctgtg tccagttgtt
      541 tcagtggtgc cggaacttgg ctgtctagtg cggctagttc tgaaaatgga tcatcttcaa
      601 ctatcggtat ttgcaaatga gcgcaaattt tcacgagttc tttgcgccgt tccaaactca
      661 ttacaagtcc agttggattt tgaaaggttg gattaacaaa aaccattttc acacggtgtt
      721 tatggtataa atcgcgtaat tcagaaataa tgacaccatc ctcgtccatt ggtagtgcaa
      781 aaatccgcaa accggctgac tgaaacaacg atagcgaata aaagtaggaa ggcgactcaa
      841 ttgccacagc atcacccggt tttaataaac attgcgtaat taaaaagagc gcttgttgtg
      901 cacccgatgt aatgaaaatt tgttcgggtc gtgtttgtaa gccataagct tccttcatct
      961 gtttttgaat cgtttcacgc agtggtttgt atcccgcttc atcctcctgt tgttcttctg
     1021 caataaaaga ctgccatgaa agactcggtg tttccatttt tggcgtcatt tcaagtggca
     1081 attccccgct cgctgcatca atcacttgat ccgaatcagc tcgttccatt actcccgctt
     1141 gccgaatata agggactgct ggtgtaaagc ccccttgcgt taaataatgg cgccaattgg
     1201 ttgactgccc tgcaaaaagc ccccattttt ccgcattgac tgtcgttcca ctaccttgtt
     1261 tgcgaatgat aaccgcacgt gctgtaagtt catcgagcgc ccgcacaacc gtcgaacgat
     1321 tcaccccaaa catttccgcc aactgtcttt ccggaggcaa cttctcttct ggcaaaagtt
     1381 ctccgttgat aatttttgtt tctattaaat ctacaatttg taaataaatt ggtaaattag
     1441 aatttccagc aagtttccac atctactaca cctcttttat aattggatgg agaaaacaac
     1501 atccaattgg ctgtttttac gaaatggctt ttagcttatc ataataatca ggtattttca
     1561 attaactttg atggaggtta ttagtatgga gaaaaaagtt ggtacagatc gtgtaaaacg
     1621 tggtatggcg caaatgcaaa aaggtggcgt cattatggac gtagttaatg ctgaacaagc
     1681 aaaaatcgca gaagaagctg gcgctgttgc cgttatggcg cttgaacggg ttccttccga
     1741 tattcgtgca gctggtggtg tcgctcgtat ggccgatcct cgtattgtcg aagaagtaat
     1801 gaacgctgtt tctatccccg taatggcgaa agcacgtatt ggtcatatta cagaagctcg
     1861 cgtccttgaa gcaatgggtg ttgattatat cgacgaaagt gaagtattaa caccagccga
     1921 tgatgaattc catttattaa aatcagattt cactgtccca ttcgtgtgtg gttgtcgtga
     1981 tattggtgaa gcactccgcc gtattggtga aggggctgcc atgcttcgta caaaaggaga
     2041 acccggaaca ggcaatatcg ttgaagctgt ccgccacatg cgccaagtaa acggtcaaat
     2101 ccgccaaatt gcgggaatga cggatgatga gttaatggtt gccgctaaaa acttcggtgc
     2161 tccatatgaa ttaatcaaag aaattaaaac acttggcaaa cttccggtcg ttaattttgc
     2221 tgctggtggt gttgcgactc ccgcagatgc cgcattaatg atggaacttg gagcagacgg
     2281 cgttttcgtt ggttctggta ttttcaaatc agataaccct gccaaatttg ccagtgcgat
     2341 tgtccaagct accacttact atactgacta tgagctaatc ggaaaacttt ccaaagagct
     2401 aggttccccg atgaaaggaa tcgaaatgtc tcgccttaac ccagaagaca gaatgcaaga
     2461 tcggagcatt taatatgaaa aaaattggag tccttgcaat tcaaggtgca gttgatgaac
     2521 atatccaaat gattgaatca gccggtgctc ttgcttttaa agtaaagcat tcaagtgatt
     2581 tagatggact tgacgggctt gttttacctg gtggtgaaag tacaacgatg cgcaagatta
     2641 tgaagcgtta tgatttaatg gaacctatcc gcgcatttgc aagtgaaggg aaagctattt
     2701 ttggaacttg tgctgggctt gtccttttgt caaaagaaat tgaaggtggc gaagagagcc
     2761 taggattgat tgaagctacc gcgatccgta atggttttgg taggcagaaa gagagttttg
     2821 aagccgaatt aaacatcgaa gcatttggtg aacctgcgtt tgaagctata tttatccgcg
     2881 caccatactt aattgaaccg agtaatgagg tagctgtgtt agcaacagtt gaaaatcgaa
     2941 tcgtagcagc taaacaagct aatattttag ttaccgcatt ccatcctgaa cttactaacg
     3001 acaatcgctg gatgaattac ttcctcgaaa aaatggtata aaaaaagcag tagacaattt
     3061 agtctactgc ttttgcatat tatttattca ctgcttgcgc tgctgtaatt aacgttaagt
     3121 tataaacgtc atctgtatta caaccacgag ataaatcatt aactggtgca tttaagcctt
     3181 gtaaaattgg gccaactgct tcaaagttac ctaaacgttg cgcaattttg taaccaatgt
     3241 ttcctgcttc taggcttggg aagataaata catttgcgtc ccctttaata acggatcctg
     3301 gcgctttttt ctcagcaacc gttggaacaa atgctgcgtc aaattggaat tcaccatcaa
     3361 gcgttaattc aggtgctttt tcttttgcaa gagcagttgc ttctacgact ttttccgttt
     3421 catcggattt tgcagaacct tttgtagaga aacttaacat tgcaacacgc gggtcaatgc
     3481 cgaagatttc tgctgtttcc gcacttacaa tcgcattttc cgctaagtct gctgcaactg
     3541 gtgcaatgtt gatagctaca tcactgaata aatagcgttc ttcaccgcga accataatca
     3601 ttgcgccggc aactttactt acgcctggtt ttgttttaat aatttgtagt gctgggcgaa
     3661 cagtgtcacc agtagagtga gccgcgccac ttacaagacc ttctgctttt ccagtgtata
     3721 caagcattgt tccaaaatag tttggatcaa cgagcatttt acgtgcagct tcttctgttg
     3781 ctttcccttt acgacgttct acaaatgcag ccactaattc atcaaaaagt ggatcggtcg
     3841 caggttcgtg aatagcgatt ccttcaacag aaacgccaat ttcttttgct tttgcttcaa
     3901 tttcagcttt gttaccaagc aaaattggtt ttacgatatt ttctttttgc agacgtgcag
     3961 ctgctccaac aatacgttca tctgttcctt caggtagtac gatgcgcacg tttttcccag
     4021 taacttgtcc tttgattgta gtaaataaat cactcatgtg ttaattgcct ccattaatat
     4081 acatattata gttaccattt tactataaaa aagaacaact tgacagaaaa aaagtgatta
     4141 aaaacagctc cagcacttat ttccgtgtat caatacagag gtaaaaaggc atgcttctta
     4201 gttaaaagac ggctatgctc ttaagaaatt tttttgctgt tataccctac tattttgcta
     4261 ttctagcagc aatttcaaaa aaacacttca tattaaggtc tgttcgtgat aaaatgaaca
     4321 tagttgataa tgattatcat gttcattaaa taacataaaa ggaggcctgc tagcttatgc
     4381 aattaaatga aactgctgtc ggtgaaaaag ttcgcatctc agaattaaaa attgagaacg
     4441 ccatgcttaa acgtcgctta cttgcacttg gttgcgatga aggttgtgat atttgtatca
     4501 aacaaaaagg actatttggc ggtccctgta cttttgaaac aaaagggcaa tatatcagca
     4561 ttagacaatg tgatgcttgc gccattatgg tggaacgcag atgagtcaaa atacatattg
     4621 cttactcgga aacccaaata ccgggaaaac ttccttattt aatgcattaa caggctctta
     4681 tgaatatgta ggaaactgga gcggagtcac cgtcgaaaag aaagtcggta cgttgcgctc
     4741 aaaaactgga aaattaattg atttacccgg tatttatgac ttaaatccga tttctcgtga
     4801 tgaaacagtt gtcactagat ttttactgga agagaaattc gattgtatgt taaatattgt
     4861 tgattcctcg caaattgagc gaaatctaaa tttaaccatt cagctacttg agtttggtgc
     4921 acctgttgtg atgggactga atatgattga tgtagctgcc ggtcgcggta ttcatctaaa
     4981 catccagaac cttgccaaac aattgcgcat tccaattttg ccagtagttg ctcgttccgg
     5041 aaaaggtaca gacgatattt tatctacttt gtcagaaaaa cacgtagctc ccgcgattcc
     5101 acttatttta ccatacgggg aacccgcgga aaaagcgatt actgaaatcc aagctttaat
     5161 caaagacatg attcctgcca aacaatctcg ctggcttgct gttcaatttc tttctaaaaa
     5221 tgaagtcaca gaagaatttt tagcgacatg ccctgctttg gagcaattaa aacatatccg
     5281 cacagaactt gaaattgcgc ttgacggtaa actagaaaat cattttcacc aagttcgtgt
     5341 gaattacatt catgatattt gtttaacctc ggtcgaatat acgcgccatt cggatattcc
     5401 actatccgat aaactcgata aaattttcac ccacaagttt tttggcattc ctatttttct
     5461 tggtattatg tggttgattt tccaaataac ctttacttgg gttggcgcac cgctatctga
     5521 tttgctcgat ggttttattg gcgggccgct gacggactcc gtaacatcct ttttaacagc
     5581 cattggcgca tctggattta tcactgattt ggttgcagat ggtatcatcg ctggtgtcgg
     5641 tggcgtgctt gtctttgttc ctcaaatatt ggttattttc ttcttcattt ctgtcttaga
     5701 agattccgga tacatggcta gaatagcggt tgttatggac cgcgtaatgg aaatcttcgg
     5761 cttaaatggg aaagctttta ttccgatgat tatcggcttt ggttgtaatg tccctggaat
     5821 tatggcggcg cgctcgattg aagaatccaa agaacgaaca ctaactattc tcgtttcacc
     5881 atttatgtcc tgctccgcgc gacttcctgt ttatgctctt tttgtaggcg tgtttttcga
     5941 gaaacatcag gcgctcgtag tactttcact ttacgttatc ggtattttaa tggcacttat
     6001 cgtcactaaa attttatcaa aaactttact taaaaaagat aattccgtat tcgtcgtcga
     6061 actaccaccc taccgcctcc catcgcttaa aactttatgg cgcagcacgt gggaaaaagg
     6121 aaaaggattc ttgcgtaaag cgggaacatt cattttcgca ggttcggtta tcatttggtt
     6181 gctaaactac gctggtccat ctggactcga cgtaccaatg ggcgaaagtt tcttagcaat
     6241 tatcggtggc atgctcgccc cactactcgt tccgcttggt ttcggaacat ggcaagcggg
     6301 agccaccctt atacctggtt ttctagcaaa agaagtagtc gtttccacaa tggcaattat
     6361 ttatgcagtt ggagaaagtt cgcttggcag catcgttagc actttctata caccactttc
     6421 ggcttattgc tttatgttgt tcatcttgct ttacatccca tgtttagcga cagttgccgc
     6481 cattcgtaaa gaaactagtt cttggaaatg gaccgcattt gctgtcgctt atccacttgt
     6541 tacagcctac gtgttagtat ttctcgttta tcaaattggt agtctattcg tttaagagag
     6601 gatgtttttc gtgagtataa tggttaattt attacttggt ggcgcaattt tcggctacac
     6661 tatttacgcg attattaaat ttatcaaacg cagtaaacaa ggaaaatgtg gcggctgtga
     6721 acttgaaaaa gcctgtaatt gcgagtcaga cgaacataca aatttggatc atatctttaa
     6781 atagaaaaaa gagccttgat gaaggctctt ttttcagttc gtcgctggct ttatcgtcac
     6841 tgcaacaatt tcatatggat ttcctaacct cggaaatgct ttttgatgaa ggcttcccgc
     6901 accaagtcca gctgaaatta tcattgtctt tccatctttt gaatgttctc cgtatacata
     6961 atccggcaaa agtgttcgct gcggtcctgg agcaatcgca ccaatattcg tatacggaat
     7021 acgcacaatc cctccatgcg tgtgaccact taaagttaaa tcaaaaccat tctccacata
     7081 aagctcaaaa tagtccggca tatgcgacaa aagaatttga taatacgttg aatcttgctg
     7141 cttttttatt tctgctagtc cttctttata ataaggatag tcataatcta aattcgcact
     7201 actccgcaat ccagacattt gaaatttctg tcctcccacg tcgatagtag cagtttgatc
     7261 ttctaagtta actacaccaa ttttttctaa aaatggcttg taatcgtcct cataggcatt
     7321 tttaacatca tattcatggt tccccggcga aaaataaacc ggcgcaatct tcgtaagctt
     7381 tttaataagc tctttaggaa cactatcccc ttgcctatca aaaagatctc cagtaattgc
     7441 aatcacatct ggatttaaat ttgccacttt atgtaacaaa ttttcattct tatcgccaaa
     7501 ttcactaaaa tgcaaatccg ataattgcac tagtttaatt tctttttcaa ttttagcaga
     7561 actcacttca tattttttca ccgttagcct agtccccaaa aaccatccta caactaaaag
     7621 tacaataatc atactgattg ctataatcca ctttatcttt aaagccattt tctcacctct
     7681 atgttgctat ttccatttat tatcaatatt ttgtcatcca ttatatgtta cccctatcat
     7741 tataacctag attaagtgtt gactcaaaat gcacgaaaaa accaccccaa ttctaacaaa
     7801 agtagaaaag ggaa
//
LOCUS       DASDXX010000127         7794 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.127, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000127 DASDXX010000000
VERSION     DASDXX010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7794
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.127"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..270)
                     /locus_tag="U0280_002091"
     CDS             complement(<1..270)
                     /locus_tag="U0280_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2272017.1"
                     /translation="MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLN
                     DYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSGSSEQVIEGNK"
     gene            393..1661
                     /locus_tag="U0280_002092"
     CDS             393..1661
                     /locus_tag="U0280_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272018.1"
                     /translation="MAGSSTSKKGTIAVSLTNYLDSGCIVAGASGLTLWATQFGLSSF
                     AVGLLGAVSANAFGSAIGALIGGHLADKYGRKFIYTYNMLVYMLGVTIIMFAMNFPML
                     LIGFLVTGLSVGAGVPASWTYISEMADPSIRARNIGISQFAWSCGPAIIFTLGIIVSP
                     LGLLGNRLLFLSLLIVAFVAWQLQRKLEESKDWEAEQVKMKESGNRLEHPFKTAFSSM
                     VNVKSVLFLVGVYLFWNLVAGAMGFFMPFVYETVGGLSNTQANLLQAVLWILTAASTY
                     FGFAKFGDRVSHRGLFFVGALMAVASWVVLTFVGMSWVGLWTFVILWGISAGIGAQAF
                     YALWSTELFPTKYRGGVQGVMFFLVRGSTGVWSIVFPVILANLGFTVAGTIMIGLLTV
                     SLLIGVIWAPKTRGRSLDDITKERYGNTID"
     gene            1680..3131
                     /gene="rhaB"
                     /locus_tag="U0280_002093"
     CDS             1680..3131
                     /gene="rhaB"
                     /locus_tag="U0280_002093"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HEM2272019.1"
                     /translation="MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGH
                     ERWEIDQLMQEIFIGLEKVKQLGISECVLGIDTWGVDYVLIGASGEKLADPISYRDKR
                     TLNAVQNLTSEYPREYIYKKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYV
                     LTGVKVAETTNSSTTQMLNLREQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWL
                     EEYDIPNCDVVTVATHDTASAVVGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFK
                     ENYTNEWGAYGTYRFLKNIMGLWIVQEIARMDDYKHSFAEMAEEASNYPYFKQIINVN
                     DARFNNPENMVDEIKLYCQETGQTIPETIGELTNCVYGSLALYYALELEKMTEITGKK
                     IEKLYIVGGGSNVAMLNQLTAKLAGIEVFAGPSEATAIGNLVVQMINQGEIESMRAGR
                     KIIRNSFEIGEFSCGDVRFEEIKERFTKVLEFN"
     gene            3144..4406
                     /gene="rhaA"
                     /locus_tag="U0280_002094"
     CDS             3144..4406
                     /gene="rhaA"
                     /locus_tag="U0280_002094"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HEM2272020.1"
                     /translation="MGQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQG
                     DDVKGFLNPDGELTGGIMATGNYPGAAHTPKQLRQDLEKAYSLIPGKHKLNLHAIYVD
                     TDEKVDLNEIEPKHFTPWVEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFW
                     IEHGKRSRKISEYFGKELGQTSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKL
                     DEKYTQEAVESKLFGLGAEAYTVGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLS
                     SLALFSKGVMLHVSRPVRWDSDHVVIMDDELIEIGRELVRNDLLGITNIGLDFFDATI
                     NRIAAWVVGTRNTQKSLLKALLEPTADLKKMELENDFTSRMAITEELKDFPFGDVWNY
                     FCEINGVPVGLDWLKEVKAYEEDVLLKR"
     gene            4419..5240
                     /gene="rhaD"
                     /locus_tag="U0280_002095"
     CDS             4419..5240
                     /gene="rhaD"
                     /locus_tag="U0280_002095"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HEM2272021.1"
                     /translation="MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVV
                     EYLDVKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFKNVEEAPAVNLGVIQVSEDGKAV
                     HLLWGYTDGGLPTSELPAHFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREF
                     TRTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGK
                     SMDETFGLIETAEKAAEVYTIVMSQGGIKQAITDEQLKALGERFGVEAKAGYLIN"
     gene            5253..5567
                     /gene="rhaM"
                     /locus_tag="U0280_002096"
     CDS             5253..5567
                     /gene="rhaM"
                     /locus_tag="U0280_002096"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEM2272022.1"
                     /translation="MERVASIMYLYPGNQEEYKKRHDALWPEMKEALKAHGAANYSIF
                     LDEKTDTLFAYVEVEDKAIYDKIAETEICQKWWKYMAPIMKSNPNNSPVALDLKEVFY
                     LA"
     gene            complement(5608..7020)
                     /locus_tag="U0280_002097"
     CDS             complement(5608..7020)
                     /locus_tag="U0280_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272023.1"
                     /translation="MEQTNKRNTLALISIMLGAFISLLDTTIVNVALPDITTALHATS
                     ETIEWVISGYALAFGLVLILAGRLGDKFGRKNIYIIGITLFLIMSVTAGFADSENSLI
                     ISRVIQGLAAGLFFPQINATIMDMYSGKSLGKIFGILGSVIGVGTAIGPLTGGLLIEL
                     FGTTNGWRAVFFVNVPFVLVTLVLAMLYLPKRTVSTKKISFDLPGVGLLTIALLLLLF
                     PLISNGANDFKPIDYLLMALSIPLFIILYKWSVYQEKKGNQPLIAPNLLKNNQFVSGM
                     LLSLVYFAAFTSIFFVLSLTWQTGFNRSAILSGLAISPFALGSVLAASNSYRLIPILG
                     RKLLMLGVALVIIGLGTVSIVFHLNDGAFSAWLLFLPLFIAGIGSGLTIAPLNSFTLS
                     TVTGVDRGGASGMFNTAQRIGSSFGIAVVGSVFFRTLGNTAATSKASAFSDSLQMSMY
                     VNIVLLVVCFLLVFRLPKNI"
     gene            7176..7718
                     /locus_tag="U0280_002098"
     CDS             7176..7718
                     /locus_tag="U0280_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272024.1"
                     /translation="MENRKQMIKTERLFLSEMTLADTEILFGYWSDDSVTRYMNIEPF
                     QSLQPVEEMIRMLRQLEIEGKALRCVIILQVTGEIIGTCGFNYIDHENHRAEIAYDLG
                     TRFWKRGYATEAVRALMEWGKESFELHRIEAKVDPRNSASIALLEKLGFSKEGLLRDY
                     EKIGETYQDVQLFSWIDEIQ"
BASE COUNT         2516 a         1179 c         1796 g         2303 t
ORIGIN      
        1 tttatttcct tcaatgactt gttcggagct tcctgaatac atgtaattta gctcaagaaa
       61 ttggtgtgta tgataaggat agtccgcaaa tcggttgtgt ttgcttatat aaatgtcttt
      121 gtttttgaag aaataatcat ttaataattc catgctgccg ttctctttta aaaaggatcc
      181 attgggtaaa tcgggaacaa aagtgccagt gcttttttgg attttttctt ttgaatttag
      241 acgaaataat tttttattaa gcgcttccat ttcacaatct ccttctgtaa atttgatact
      301 ttaattataa acacaggata ttgtaaagcg caatcattaa ttgtttaata taaagtaagc
      361 gcttaactaa aataagtagg agggttaaaa gaatggctgg atcgagtaca agtaaaaaag
      421 gaacgatagc ggtatctttg acgaactatt tagattctgg atgtattgta gcgggagcaa
      481 gtggactaac tttgtgggca acacaattcg gacttagcag ttttgcggtg ggattacttg
      541 gggctgtgag cgcgaatgcg tttggttctg caattggcgc acttattggt ggtcatttag
      601 cagataaata tggacggaaa tttatttata cgtataacat gttggtgtat atgcttgggg
      661 ttacaatcat tatgtttgca atgaatttcc caatgctatt aattggattt ttagttacag
      721 gtctttctgt tggggctggg gttccggctt catggacata tatttctgaa atggcggatc
      781 ctagtataag agctagaaat attggtatat ctcaatttgc ttggtcatgt gggccagcaa
      841 ttatctttac tttaggaatt attgtatctc cacttggact tttaggtaac cgcttacttt
      901 tcttatcttt attgattgta gcgtttgttg cttggcagtt acaacgtaaa ttagaggagt
      961 cgaaggactg ggaagcggag caagtgaaaa tgaaagaaag tggtaatcgt ttggaacacc
     1021 cttttaaaac agcattttct agtatggtaa atgtaaaatc agtacttttc ttagtgggtg
     1081 tgtacttatt ttggaattta gtagcgggtg caatgggatt ttttatgccg tttgtatatg
     1141 aaacggtggg tggtctttct aatacacaag cgaatttatt gcaagctgta ttatggatac
     1201 tcacagcagc ttctacatac tttggctttg ctaaatttgg tgatcgagta agtcatcgtg
     1261 gattgttttt tgtaggggct ttaatggcag ttgcttcttg ggttgtactt acttttgttg
     1321 gaatgtcttg ggttggctta tggacatttg ttattttatg gggtatttca gcagggattg
     1381 gtgcacaagc tttttacgca ctttggtcaa cagaactttt tccaacaaaa tatcgtggtg
     1441 gggttcaagg cgtgatgttt ttcttagttc gtggtagtac aggtgtctgg tcgattgtgt
     1501 tcccagtaat cttggcaaat cttggcttta ctgtggcggg gacaattatg attggtttac
     1561 ttacagtgtc gcttttaatc ggtgtaattt gggcgccgaa aacacgtggc agatcacttg
     1621 atgatattac gaaggaacgt tacggaaata caattgatta aagaaaagga gctagaccag
     1681 tgaaacatta tgttgcagta gatattggtg catcaagtgg tcgattaatt ctagggaaat
     1741 tggtgaatga aaaattacaa ttagaagaaa ttcaccgttt taaaaatggt tttacgtacc
     1801 gagatgggca cgaacgctgg gaaattgatc aactgatgca ggaaatcttt attggcttgg
     1861 aaaaagtaaa gcaactagga atttcggaat gtgtgcttgg tattgacacg tggggcgttg
     1921 actatgtttt gataggggct tccggtgaga agttggcaga tccaattagt taccgcgata
     1981 aacgaacttt aaatgcggtg cagaatttaa cgagtgagta tccacgagaa tatatttata
     2041 aaaaaacagg tattcagttt atggaattaa atactctata tcagctgtac gtggaagagc
     2101 gagatttact agaacgagcg gagaaaattt tgttgattcc tgactatatt ggttatgttc
     2161 tcacgggggt taaggtggca gaaacaacaa attcatcgac tacacaaatg cttaacttgc
     2221 gagaacaatt atttgataag gatttacttt cgcatttgaa cattgatgtg gaaaaatttg
     2281 cgccactgac ggatgcaggt acgtatttag gtaaagtaaa agaggagtgg ctagaggagt
     2341 atgatattcc taattgtgat gtagtgacag tggcaacaca tgatacagct tcggcagtgg
     2401 tgggaactcc ggcagaagga gaaaattggg cattcttgag tagtgggact tggtcgctaa
     2461 tagggatgga gctaagtgcg ccaattaata acgaagcagc ttttaaagaa aattacacga
     2521 atgaatgggg cgcatatgga acttatcgct ttttaaaaaa tattatgggg ctttggattg
     2581 ttcaagaaat tgcgcgcatg gacgactaca agcatagttt tgctgagatg gctgaggaag
     2641 cgagtaatta tccttatttc aagcaaatta ttaatgtcaa tgatgccagg tttaataacc
     2701 cggaaaacat ggtggatgag attaaattgt attgccaaga aactggacaa actataccgg
     2761 agacgattgg agaactgaca aattgtgtgt atggaagtct ggcactctat tatgcactag
     2821 aattggagaa aatgactgaa attactggta agaaaatcga aaaactttat attgttggtg
     2881 gaggaagtaa tgtagctatg ctaaatcaat taacagctaa acttgcaggg atagaagtat
     2941 ttgcgggacc ttctgaagca acggcgattg gaaatttagt tgtacaaatg attaatcaag
     3001 gtgaaatcga atctatgcgt gcgggaagaa aaattattcg aaattcattt gaaattggcg
     3061 aattttcttg tggtgatgtg agatttgagg aaataaaaga aagatttact aaggtacttg
     3121 aatttaatta ggaggctttt agaatgggac aagaaacaga aattagtaaa cgataccaag
     3181 tggcgaaaga acgttatcaa gcaattggag ttgatacgga aaaagcgctt aaaacactga
     3241 aagacattaa aatttcgatg cactgctggc aaggcgatga tgttaaaggt ttcttaaatc
     3301 cagatggcga acttacaggc ggaatcatgg cgaccgggaa ttatccgggt gcggctcata
     3361 ctcctaagca attacgccaa gatttggaaa aagcttattc acttattcct ggaaaacata
     3421 aacttaactt acatgcaatt tacgtagata cagatgaaaa agtagattta aatgaaattg
     3481 aacctaagca tttcactcca tgggtagagt gggcgaaaga gcagggtttg ggtctggatt
     3541 tcaacccaac tttcttttca catccaatgt ttaaagacaa ttacacttta gcgtcaccag
     3601 ataaagaagt tcgcgatttt tggatagagc acgggaaacg ctcgcgcaaa atttctgagt
     3661 actttgggaa agaacttggt caaacaagta ttaataattt ctgggtgccg gatggtataa
     3721 aagattgccc gattgatcgc tacaccccga gaaaacgttt gatggaagct ttagatgaag
     3781 tttttgcaga aaaattagat gaaaaatata cccaagaagc tgtagaaagt aagttgtttg
     3841 gtttaggcgc agaggcttat actgtcggtt cgcatgaatt ttatatgggt tacggaatta
     3901 cgcgggataa attgatttgc ttggatgcgg gacatttcca tccaactgaa gtcatttcta
     3961 ataaattatc ttctttggca cttttcagta aaggcgtaat gttacatgtg agtcgtccag
     4021 tccgctggga tagtgaccat gtggtgatta tggatgatga attaattgaa attggtcgcg
     4081 aattggtgcg caatgattta cttgggatta caaatatcgg tcttgatttc ttcgacgcaa
     4141 caatcaatcg gattgctgca tgggttgttg gaactagaaa tacgcaaaaa tcattactta
     4201 aagccctttt agaacctaca gctgatttga aaaaaatgga actggaaaat gactttacat
     4261 ctcgtatggc aattacagaa gaactaaaag acttcccatt tggcgatgta tggaactact
     4321 tctgtgaaat taatggtgtt ccagttggtc ttgactggtt gaaagaagta aaagcttatg
     4381 aagaagatgt attactaaaa agataggaga tagtgacgat gacaaaggat ataatggatg
     4441 ctgtttttat taaggaaatg gcgaaaacta cttcaaattt ataccggtta ggctgggatg
     4501 aaagaaacgg tggcaatatc acttatttgt tggatgaaaa agaagttgtg gaatatttag
     4561 atgtaaagca aatcattcgc acaattccaa tggactttga cggtaaaaag cttgctggca
     4621 agtatttctt agtaactggt tcgggtaaat attttaaaaa tgttgaagaa gctccagctg
     4681 tgaatttggg tgtaattcaa gtgagtgaag acgggaaagc agttcatttg ttgtggggct
     4741 atacagacgg cggactacca acgagtgaac ttccagcgca ttttatgagt cacattgcaa
     4801 gactttctgt ggatccggaa aaccgcgttg ttatgcattg tcacgctact catttgctcg
     4861 cgatgacatt tacacatgag ctaacggaac gagaatttac aagaacttta tggcaaatgt
     4921 gtacggaatg tttagtcgtt tttccagaag gtgttgggat tattccttgg ctggttcctg
     4981 gtacgaatga aattggagaa gctacatctg aaaaaatgaa ggaaaatcgt ttaatcgttt
     5041 ggccacatca cgggatttat ggtgcgggaa aatcaatgga tgaaacattt ggattaattg
     5101 aaaccgcgga gaaagcagca gaagtttata ctattgtgat gtcacaaggc ggtattaaac
     5161 aagcgattac agatgaacaa ttgaaagcac tgggtgaaag atttggcgtt gaagcaaagg
     5221 caggttattt aattaattag gaggtaacaa taatggaacg agtggcatct attatgtatt
     5281 tatatcctgg taatcaagaa gaatataaaa aaagacacga cgcactttgg ccagaaatga
     5341 aagaggcttt aaaagcacat ggagcagcta actattcgat atttctagat gaaaagacgg
     5401 atacattgtt tgcttatgtg gaagtcgagg ataaagccat ttatgacaaa atagcagaaa
     5461 cagaaatttg tcaaaagtgg tggaaatata tggctccaat tatgaaatca aatcctaata
     5521 acagcccggt tgcattagat ttaaaagaag ttttctattt agcataagaa aagagacatg
     5581 actttaacgc aaagtcatgt ctctttttta aatatttttc ggtaaccgga atacaagtag
     5641 gaaacaaaca acgagcagaa caatattgac gtacatactc atttgcaaac tgtcggaaaa
     5701 ggcgcttgct tttgaagtag cggcagtatt tccaagtgtg cggaagaaga ctgagccaac
     5761 aacagcaatc ccaaaggacg atccaattcg ctgcgctgta ttaaacatac cactagctcc
     5821 gccgcgatcc acaccagtta ctgtggaaag ggtgaaacta ttcaatggtg caatagtcaa
     5881 accactgccg ataccagcga tgaaaagagg taagaataag agccaagcag aaaaagcgcc
     5941 gtcgttcaaa tggaaaacaa tagacacggt gccaagcccg atgataacaa gcgcaactcc
     6001 aagcattaag agctttctac ctaatatagg gattagtcgg taactattag aggcagctaa
     6061 cacactacct aacgcaaaag gactaattgc aagcccggat aaaatagccg aacgattgaa
     6121 accagtttgc caagttagcg ataggacgaa gaaaatacta gtaaaagcgg caaagtatac
     6181 aagcgataaa agcatacctg aaacaaattg attattttta agtaggttgg gagcaattaa
     6241 tggctgattt cctttctttt cttggtagac gctccatttg taaagaatga taaagagtgg
     6301 aatagatagc gccattaaaa gatagtctat cggtttgaag tcatttgcgc cgtttgagat
     6361 aagtggaaaa agtaatagta aaagtgcaat ggttagtagc ccaactccag gcaaatcgaa
     6421 gctaattttt ttcgtggaga cagttctttt gggaagataa agcattgcta ggactagcgt
     6481 tactaacaca aaaggtacgt taacgaaaaa aactgcacgc caaccatttg tagttccgaa
     6541 aagttcaatt aaaagacctc ctgtaagagg tccgatggca gttcccacac caataacaga
     6601 tccaagaatt ccgaagattt tcccaaggct ttttccagaa tacatatcca taattgtggc
     6661 attgatttgc gggaaaaata atccggcagc aagtccctgt attacccggg aaataattag
     6721 actattttcg gaatctgcaa aaccagctgt cacactcata attagaaata gcgtaatccc
     6781 gataatgtag atattttttc ggccaaattt atccccgagt cgaccagcta aaataagtac
     6841 aagtccaaaa gcaagcgcat agcctgaaat tacccattcg atggtttcac tcgtggcatg
     6901 tagagcagtt gtgatatcag gtaaggcaac gttgacaatt gttgtatcta ataatgaaat
     6961 aaaagctcca agcataattg aaataagtgc taaagtatta cgtttattcg tctgttccat
     7021 gaatcattct ccttttttga agctttttga gatattttcc attataaacc taaaaactct
     7081 gatgataaag aaggagcgaa tgtttcacgt gaaacatttt actttgcgag taagatttga
     7141 taagcttctt ttattaaaag ggcgggggtt aacgtatgga aaatcggaag caaatgataa
     7201 aaacggaacg acttttttta agcgaaatga cgttagctga tactgaaata ttgtttggtt
     7261 actggtcaga tgattctgtt actagataca tgaatattga acctttccaa agtttgcaac
     7321 cggttgaaga aatgattcgg atgctacgac aactagaaat tgaaggaaag gcacttcgtt
     7381 gtgtgattat tttgcaagta acaggagaaa tcattggtac atgcggattt aattatattg
     7441 atcatgaaaa ccatcgggca gaaattgcct atgatctagg tacacgcttt tggaaacggg
     7501 gttatgcgac ggaagcagtg agagcgttga tggaatgggg aaaagaatca tttgaattgc
     7561 accgaatcga agcaaaagta gacccaagaa atagtgcttc tattgcattg ttagaaaagc
     7621 ttggtttttc gaaggaaggt ttactgcggg attatgaaaa aattggtgag acataccaag
     7681 atgtgcaatt gttttcgtgg atagatgaaa ttcagtagta aatgtgtcga tttttttact
     7741 aaatagtgta gataaaccaa aagttattat atcataaaga ttttgccttg tttg
//
LOCUS       DASDXX010000128         7784 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.128, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000128 DASDXX010000000
VERSION     DASDXX010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7784
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.128"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            53..1405
                     /locus_tag="U0280_002099"
     CDS             53..1405
                     /locus_tag="U0280_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEM2272025.1"
                     /translation="MKKLRIFTLMLAFALFLLGGGIVAQAAEEAPIDEKIVGETVTND
                     GEEFIVDEISDLEDVNSTTGTLDTSDEVEVDLSGLTIENEEAVLTPGLKTIFGGDGRK
                     LVTNTTQYPYSTSAYLVMEFPNGKTYIGSGQLIGEDSVLTAAHCLYGKKDGGWAKKVT
                     VYPGYNGTKAPFGTAKARKMYVPKEWTKKEPSTEDYGVIKLDKNIGTKTGTMGLTTNT
                     SGAITISGYHGDKKGKLYTQTGNISQVTANNVFYRLDTTGGSSGSGVYNSKKQILAVN
                     AYEYLNGTGDNFGTRITKEKLNNIYTWAFDNNLSVSKQKGINYELHVQSKGWMGNVAN
                     SMTSGTVGLGLRAEAMKISLSGMPYSGDIQYRSHVQGSGWQGWLKNGEISGTRGQSKR
                     LEAFQVKLTGNIAKNYSVQYRAHVQNKGWQSWVKDGATAGTTGESLRIEAVQMRLVAK
                     "
     gene            1542..2165
                     /locus_tag="U0280_002100"
     CDS             1542..2165
                     /locus_tag="U0280_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEM2272026.1"
                     /translation="METWITSIMADFGYIGIFVLIMVENLFPPIPSEIILTFGGFMTT
                     VTSLNVVMVIIVATLGSVVGAILLYKVASYFGKERLTKIVLKYGRILRLKESDIERAE
                     SFFLKYGSWAVFLCRMIPLIRSLISIPAGMTKMKMSRFLILTTAGSLLWNTVLIGLGA
                     VLGESWNEIVVFMDSFSTIIYSVIAILVVVGLGFFFRARFKKTLDEE"
     gene            2259..3242
                     /locus_tag="U0280_002101"
     CDS             2259..3242
                     /locus_tag="U0280_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM2272027.1"
                     /translation="MRIGMRTVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTK
                     KGSLQLAIQRVYSTVLALSIAAVFFMLIGYNAVSFGLYLLIFIPLAVRLHVADGIVVS
                     SVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKIEAIMR
                     QILTEMTQGLRNQSEYHDEFGLLNQLKGTLDYAQEKAARNLDNQFFASSHYYSQYVDM
                     RLVQYRILTQMKRHLVAFDHSSEQSMALAEITEKTAQTLDEHNTAEDLVAEITKMVHE
                     FRSSKLPETRAEFENRAILFQFMNDLRYLLEMKRDFYAEFGLKEKEMTRGR"
     gene            3246..3623
                     /locus_tag="U0280_002102"
     CDS             3246..3623
                     /locus_tag="U0280_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2272028.1"
                     /translation="MVEKIGQVMLYVENQAAVRDFWVEKLDFVVVSEEVVNGEIQWIE
                     IAPTKGVETTFVLQNKKKVAEMNPEMNLGTPSILLFGNNVAELYEEYKDKGITVGDLV
                     DLPMGRVFNFSDNEGNYFAICEK"
     gene            complement(3673..6312)
                     /gene="ppdK"
                     /locus_tag="U0280_002103"
     CDS             complement(3673..6312)
                     /gene="ppdK"
                     /locus_tag="U0280_002103"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEM2272029.1"
                     /translation="MRKFVYQFSEGSKEMKNILGGKGANLAEMTNIGLPVPPGFIIST
                     DACNDYTANNKHLSEAIFEEVKIHLAELEKQTGKIFGFAENPLLVSVRSGAPFSMPGM
                     MDTVLNLGLNDQAAEGLANLTGDARSAYDSYRRFIQMFGDVVFEIPSYQFEQALSRIK
                     KANNYRLDTELTATDLSNLIDAYKLIFSQATGIDFPQDPLEQLRLAIIAVFDSWMNPR
                     AVIYRRLHDIDASFGTAVNIQAMVFGNTGETSGTGITFTRNPSTGEKKVFGEFLLNAQ
                     GEDVVAGIRTPEPISALEERMPTVYKELLQTCELLENHYLDMQDIEFTIEKGKLYVLQ
                     TRSGKRTAKAAIQAAIDFVHEGKITRQEAIMRVETKQLNQLLHPTFLESALKNGQVIA
                     TGLPASPGAATGQIFFEAKEAVQAAERGIPVILVRNETSPEDIEGMARSNAILTAHGG
                     MTSHAAVVARGMGKCCIAGCAELTINEKDKTIILPTGDTLHEGDALSLDGSSGKVYLG
                     EIALREAKIGGYFDELMAWADAEKRLMIRVNADTPADFKKALLFGAEGIGLCRTEHMF
                     FDEKRIPYVRQMILAESLNERESVLAILKEMQKADFNELFRIADGRSVNIRLLDPPLH
                     EFLPTMKQEIEQLAGAMNRTVPQITNRINGLREANPMLGHRGCRLAITFPEIYRMQAE
                     AIIESAIIVHNEGIDVHPEIMIPLIATKNELSYIKKELQQAVQAIFDREQVLIPYDIG
                     TMIEIPRACVTAAEIAEEAAFFSFGTNDLTQLTYGFSRDDATKFLADYYEKDILPKDP
                     FVSIDKNGVGALVEMAVTRGRMTSEHLKMGVCGEHGGDPESIQFFHQLGLSYVSCSPY
                     RVPIARLAAAQAALAEKQLVPTI"
     gene            complement(6331..7143)
                     /locus_tag="U0280_002104"
     CDS             complement(6331..7143)
                     /locus_tag="U0280_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HEM2272030.1"
                     /translation="MENPVIIYVISDAIGETAQHIIRAVTAQFSLNKPADIRRHAFIR
                     DESALLETLEEAKAADGIVVQTLVQAKLAEYATNFCVQNNIPNVDLLHTLTAAVEAKT
                     GLKSKQDPGNMRRLDSNYFDRIAAIEFAVKYDDCKDPRGLLDADIVLVGVSRTSKTPL
                     SSFLANQNWKVANVPLVPEIPIPAELFQIPAERIIGLTTTPEKLAQIRKVRLKSIGLD
                     EASSYSSEKRILEELEYGYDTFKKLGCQVIHVEDKAIEETAALITEIITSYH"
     gene            complement(7156..7773)
                     /locus_tag="U0280_002105"
     CDS             complement(7156..7773)
                     /locus_tag="U0280_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272031.1"
                     /translation="MIPIELSPRQHQIVAYVRANEPATGDSIAAHLKLTRATIRADLS
                     ILTMTGILDARPKVGYFYSGLETNPIHFDEIRQLKVADIMTQPFFAKKETSVYDAIVM
                     LFMEDIGSLYVVDEDLLVGLVSRKDLLKGALADADTKATPIATIMTRMPNLVTVTKND
                     TVLHAAEQLVFHQIDSLPVLENTKVVGKISKTRITALFVDTIKKV"
BASE COUNT         2355 a         1364 c         1700 g         2365 t
ORIGIN      
        1 gtgatttttt gatatattta tttgctaata gacaaaaaaa ggagatgcaa ctatgaaaaa
       61 gcttagaata tttactttga tgcttgcttt tgctctattt ttattaggtg gaggaattgt
      121 tgcacaagca gcagaggaag ccccaatcga tgaaaagata gttggggaaa cggtaacaaa
      181 tgacggagaa gagtttatag tcgatgagat tagtgattta gaagatgtta attcaacaac
      241 ggggacgtta gatacatctg atgaagttga ggttgattta tcaggattaa ctattgaaaa
      301 tgaggaagcc gttctaaccc caggtttaaa aacgattttt ggcggagatg gtagaaaact
      361 tgtaacaaat acaactcaat atccatattc aacgagcgct taccttgtaa tggaatttcc
      421 aaatggaaaa acttatatag gtagtggaca attgattggt gaagattctg tacttacagc
      481 cgctcattgt ttatatggta aaaaagatgg tggatgggca aaaaaagtga ctgtatatcc
      541 tggatataat ggcacgaaag ctccttttgg aacagcaaaa gcaagaaaaa tgtatgttcc
      601 aaaagaatgg acaaaaaaag aaccttctac agaagattat ggagttatta aattagataa
      661 aaatattggg acaaaaactg gaacaatggg gttaacaact aatacatctg gtgcaattac
      721 tattagtggt tatcatggtg acaaaaaagg gaaattgtac actcaaactg gaaatatctc
      781 tcaagtcact gcaaataatg ttttttatag attagataca acaggtggta gtagtggtag
      841 tggtgtttat aattctaaaa aacagatttt agcagtaaac gcatatgaat atttaaatgg
      901 taccggggac aactttggta caagaataac aaaagaaaaa ctaaataata tttatacttg
      961 ggcgtttgac aataatcttt ctgtaagcaa acaaaaaggg ataaattacg agctccacgt
     1021 ccaaagtaag ggatggatgg gaaacgttgc taatagtatg acttcgggca cagttggcct
     1081 tggcttacga gcagaagcaa tgaaaattag tttatcaggg atgccgtatt ctggagatat
     1141 tcaatatcgc tcacatgtac aaggtagtgg atggcaaggt tggttgaaaa atggggaaat
     1201 ttctggaact cgtggacagt caaaacgtct ggaagctttc caagtgaaat taactggaaa
     1261 tattgctaaa aattatagtg tgcagtatag agcgcatgtc caaaataaag gttggcaaag
     1321 ttgggttaaa gatggagcaa cagcaggaac aacaggagaa agtttaagaa tagaagctgt
     1381 acaaatgcga ctagttgcaa aataaattta aaagaatttg gtgtgtaaaa tgccaaattc
     1441 tttttctttt accaaattga ttgaaaaagt agagctagta tagtagaatt gaaaagcaag
     1501 cacttacttt aaaagggaaa taaagtacag gagtgtgttt tttggaaact tggattacaa
     1561 gtattatggc tgattttggc tatataggta tttttgtttt gattatggtt gaaaacttgt
     1621 ttccacctat tccctctgag attatcttaa cttttggtgg atttatgacg acagttacat
     1681 cattgaatgt cgtgatggtg attattgtag caacactagg ttctgttgtg ggcgcaattt
     1741 tactgtataa agtcgcttct tattttggta aagaacgact cacgaaaatt gtattaaaat
     1801 acggccggat tttgcggctg aaggaatctg atattgaacg cgcagaaagt ttctttttga
     1861 aatatggaag ttgggctgta tttttatgtc ggatgattcc gctaatacga agcctgattt
     1921 cgattccagc tgggatgacc aagatgaaaa tgtcgaggtt tctaattttg acgaccgcgg
     1981 gaagcttact ttggaataca gttttaattg gacttggagc tgtgcttggg gagtcatgga
     2041 atgaaattgt tgtttttatg gatagctttt caacaataat ttatagcgtc attgcgatac
     2101 ttgttgtggt cggtttagga ttctttttcc gagcacgttt caaaaaaaca ctagatgaag
     2161 aataatgtag gaccttgagg aatgatcttc aaggtttttc ttttgtgatt ttcgctttcg
     2221 tgctatgata ggttggacat agaaagggga gtggacatat gcggattgga atgcgaacgg
     2281 tgaaaaccgc gattgcagcg acactggcga taattttggc ggaatggcta cacttggaat
     2341 atgcagtttc ggcagggatt atcgcaattt taagtgtaca aaatacgaaa aaagggtctt
     2401 tacaactagc gattcagcgg gtttattcga ccgttttggc actatctatt gctgccgtat
     2461 ttttcatgct cattggttat aacgcggtga gttttggact ttatttactg atttttattc
     2521 cgcttgctgt aagactgcat gttgctgatg gaattgtggt gagctcggta ctcgtatcgc
     2581 atattttact cgaacaatca ttatcctttt tctggtttaa aaatgaactg ttacttatgg
     2641 cagttggcgc aggtattgcg attattttaa atttatatat gccaaaaatg gaagacgaat
     2701 taaaacgcag ccaacaaaaa atagaagcaa ttatgcggca aattttgacg gaaatgacgc
     2761 aagggcttcg gaatcagtcg gagtatcatg atgagtttgg cttattaaat caattaaagg
     2821 gtacattaga ctatgcacag gaaaaagcag caagaaattt agacaatcag ttttttgctt
     2881 cttcccacta ttattcgcag tacgtcgata tgcggcttgt gcaatatcga attttaacac
     2941 agatgaaacg gcatttagtc gcgtttgatc attcttctga gcaaagtatg gcgctggcag
     3001 aaattacaga aaaaacagca cagacgttag atgagcataa tacagcagag gatttagtgg
     3061 cggaaattac taagatggtg catgagtttc gaagtagtaa gctcccagag acacgagcag
     3121 aatttgaaaa tagagcgatt ttattccaat ttatgaatga tttgcgctat ttattagaaa
     3181 tgaagcgtga cttttatgcg gagtttggac taaaagaaaa agaaatgacg aggggacgat
     3241 gaacgatggt tgaaaaaatt ggtcaagtga tgttatatgt agaaaatcaa gctgcagtga
     3301 gagatttttg ggtagaaaaa ttagattttg tcgtagtttc agaagaagtg gtaaatggcg
     3361 aaattcagtg gattgagata gcgccaacaa aaggtgtaga aactactttt gttcttcaaa
     3421 acaaaaagaa agtggcggaa atgaacccag aaatgaatct tgggacacca tctattttac
     3481 tatttggaaa taatgtcgca gaactttatg aagaatataa agataaaggc attacggttg
     3541 gtgatttggt cgatttacca atgggccggg tgttcaattt ttcggataac gaaggaaatt
     3601 actttgcgat ttgtgaaaaa taataggaga aaaagccaga tgacagtcta tttgattgtc
     3661 atctggcttt ttttagatag ttggaactaa ttgtttctca gctaatgctg cttgagctgc
     3721 tgcaaggcgg gcaatgggaa cgcggtacgg ggaacaagaa acatagctaa gtcctaattg
     3781 atggaagaac tggatagatt ccggatcgcc accatgttcg ccgcaaaccc ccatttttaa
     3841 atgttccgaa gtcattcgtc cacgtgtaac tgccatttca actagtgcgc cgacaccatt
     3901 tttatcaatc gaaacaaatg gatctttagg taaaatatct ttttcataat aatcggctag
     3961 gaacttggtc gcatcatcac gtgaaaaacc ataagtgagc tgtgttaaat cattggttcc
     4021 aaagctaaag aacgctgctt cctcggcgat ttcggctgca gttacacacg ctcgcggaat
     4081 ttcaatcatt gttccgatat catagggaat caacacttgt tctctatcaa aaatagcttg
     4141 gactgcttgt tgcagttctt tttttatata gctaagttcg tttttcgtag cgatgagtgg
     4201 aatcatgatt tccgggtgaa catctattcc ttcattatga acgataattg cactttcgat
     4261 aattgcttcc gcctgcatcc ggtaaatttc tgggaacgta atagcaagcc ggcaaccacg
     4321 atgtccgagc atgggattgg cttctcttag tccgttgatt cggtttgtaa tttgaggaac
     4381 ggttcgattc atcgcgccag ccaattgttc tatttcttgc ttcattgttg gtaaaaattc
     4441 atgtaaaggt ggatcaagca agcgaatgtt taccgaacga ccgtctgcaa tacggaataa
     4501 ttcattgaaa tcggcttttt gcatttcttt taaaattgct aaaacagatt cgcgctcgtt
     4561 taatgattct gctaaaatca tttggcgtac ataaggaatt cgtttttcat caaaaaacat
     4621 atgctcggta cggcaaagac caataccttc cgcaccaaat aaaagcgctt ttttaaagtc
     4681 tgctggggta tctgcattta ctcgaatcat taatcttttc tccgcatcag cccaggccat
     4741 cagctcgtca aaatagccac caattttcgc ttctctgagg gcaatttctc caaggtaaac
     4801 tttgccggaa ctaccatcaa gggagagcgc atcaccttca tgcagtgtgt cgccagtagg
     4861 aagaatgatc gttttatctt tttcattaat agtaagttcg gcacatccag cgatacagca
     4921 ttttcccatt ccgcgggcaa cgacggcagc gtgagaagtc ataccaccat gagcggttaa
     4981 aatagcgtta ctccgtgcca taccttcgat atcctcagga gaagtctcat tacgaactaa
     5041 aatgacagga atgccacgtt cggctgcttg gacagcttct tttgcttcaa agaaaatttg
     5101 ccccgttgca gcaccagggc ttgcaggtaa accagttgcg atgacttgac catttttaag
     5161 agcgctttca agaaaagttg gatgaagtaa ttggtttagt tgttttgttt ccacacgcat
     5221 aatggcttct tgacgagtga tttttccttc atggacaaaa tcaatggccg cttgaatagc
     5281 tgctttggct gttcgcttgc cacttctagt ttgtaagaca tagagtttgc ctttttcgat
     5341 ggtaaattca atatcttgca tgtctaaata atgattttcg agaagttcac aagtctggag
     5401 gagttccttg taaacagtgg gcattctttc ttccagcgca cttatcggct caggggtgcg
     5461 aattcctgca accacatctt caccttgcgc attcagtaaa aattccccga acaccttctt
     5521 ttcaccggtg gaaggattgc gggtaaaggt aatgccagtt ccactcgttt ctccagtgtt
     5581 tccaaaaacc atcgcttgaa tattaacggc tgtaccaaaa cttgcatcaa tatcatgtaa
     5641 tctgcggtaa ataacagcgc gaggattcat ccaggaatca aaaacagcga ttatcgcaag
     5701 ccgcagttgt tccagtggat cttgtggaaa gtctatacca gttgcttggc taaaaattag
     5761 tttgtaagca tcgatgagat tgcttaaatc agtcgcagtt aattctgtat ctaagcggta
     5821 gttgtttgct tttttgatgc gactaagagc ctgttcaaat tggtagcttg gaatttcaaa
     5881 aacaacgtca ccgaacattt gaataaaacg gcggtatgaa tcataagccg aacgagcatc
     5941 accagttaag ttggcgagcc cttctgcggc ttggtcattt aaaccgagat tgagcacggt
     6001 atccatcata ccgggcatcg aaaaaggggc acccgaacga acggaaacga gtagagggtt
     6061 ttctgcaaat ccgaaaattt tcccggtttg tttttccagt tctgctaaat gaatttttac
     6121 ttcttcaaat atagcttcgg aaaggtgttt attgtttgcc gtgtaatcgt tacaggcatc
     6181 ggtcgagata ataaaaccag gaggcacagg caaaccgata ttcgtcattt cggccaaatt
     6241 agcacctttt cctcctaaaa tatttttcat ttctttagaa ccttcactga actgatagac
     6301 aaattttctc acattattca cctcttcaaa ttagtggtaa ctcgtgataa tttccgtgat
     6361 tagggcagcg gtttcctcaa tggctttatc ttctacatga atgacttggc agccaagctt
     6421 tttgaatgtg tcataaccat attctagttc ctctaaaatg cgtttttcac tggaataact
     6481 gcttgcttcg tctaaaccaa tggattttaa acggactttg cgaatttgcg ctagtttttc
     6541 tggggtggtt gtaaggccga taatacgttc cgctgggatt tggaaaagtt cggctggaat
     6601 cggaatttcg ggaacaagtg gtacattagc aactttccaa ttttgattgg caagaaagct
     6661 actcagaggg gttttgctcg ttcttgatac cccaacaaga acaatatctg catctaatag
     6721 gccacgtgga tctttgcaat catcatattt tactgcaaat tcaatggcag caatacgatc
     6781 aaaataattg ctatcaagac gacgcatatt tcctgggtct tgtttagatt ttaagccagt
     6841 ttttgcttcg accgcagcgg ttagtgtatg taacaaatct acgtttggaa tattgttttg
     6901 cacacaaaaa ttagtggcat actcagctaa cttagcttgt acgagcgttt gaacgacgat
     6961 accatctgcc gctttggctt cttctaacgt ttcaagtaaa gcgctctcat cacgaataaa
     7021 agcatggcgg cgaatgtccg caggcttatt aagcgaaaac tgagctgtta ccgcgcgaat
     7081 aatatgttga gcagtttctc cgatagcatc tgaaataacg tatataataa ccggattttc
     7141 catattttcc tcctactaaa cctttttaat tgtatctaca aatagcgcag taatacgggt
     7201 ttttgaaatt tttccgacga ctttggtgtt ttctagaaca ggaagcgaat cgatttggtg
     7261 gaatacgagt tgttctgcgg catgtaacac agtgtcgttt ttcgtaacgg taacgaggtt
     7321 tggcatccgc gtcataattg tcgcaatcgg cgtcgctttt gtatctgcat cagcaagggc
     7381 gccttttagc aagtcttttc tagagacaag cccaaccaaa agatcctcat caacgacgta
     7441 taaactacca atatcttcca taaagagcat aacaatcgca tcatacacac tcgtttcttt
     7501 ttttgcgaaa aatggttgtg tcataatatc ggctactttt aactgacgaa tttcatcaaa
     7561 gtgaattgga ttcgtttcta aaccagagta aaagtaacca acttttggac gagcatctaa
     7621 aatgccagtc atggttaaaa ttgacaagtc agctcgaatg gtggctcgtg ttagttttaa
     7681 atgcgcagcg atagagtcac ctgtagcagg ctcattcgcg cgaacatagg caacaatttg
     7741 atgttgtcta ggagaaagtt cgatgggaat cacatccttt tatt
//
LOCUS       DASDXX010000129         7646 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.129, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000129 DASDXX010000000
VERSION     DASDXX010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7646
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.129"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            46..1350
                     /locus_tag="U0280_002106"
     CDS             46..1350
                     /locus_tag="U0280_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM2272032.1"
                     /translation="MILTIKFLIIALLIAISAFFVATEFAIVKMRPSRLDQLIAEKDK
                     RAVLARHIYNHLNAYLSACQLGITISSLGLGWLGESTVEAALHPLFSLMELPQSAITI
                     LSFTIAFLFITFLHVVVGELVPKTLAIDKTEAVALAVARPLHIFYKVMFPFIWILNGS
                     AVFIARLFGLEPASEHEIAHTEDELKIIVGESYKSGEINQSEFRYVNKIFDFDERMAK
                     EVMIPRTEIVTVDTGSTIGELSDIMQNERYTRYPVIDGDKDHVIGVLNLKEILSAYVE
                     HGSNPSFSIDPYVKPIIRVIETIPIKELLFRMQRERSHIAILLDEYGGTSGLVTVEDI
                     VEEIVGDIRDEFDADEIPEIRKIKDGHFIVDAKLLIDEVNNILGTEIEEEEVDTIGGW
                     FLTQNYEVEVGDEIDYDGFIFRVKQGEPHHIEYIEIIKKTND"
     gene            complement(1391..2269)
                     /locus_tag="U0280_002107"
     CDS             complement(1391..2269)
                     /locus_tag="U0280_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2272033.1"
                     /translation="MNLHHLRYFVTLAHMEHYTKAAEKLLITQPSLSHAISSLEQELG
                     IPLFEKEGRNIGLSKAGKVFLDYVEESLDMIDAGVATTKKAANGEGQIDLAFLQTLGT
                     SLIPKLVQEFLQTEPEKQIDFIFHTGVSIDIIQGLKEKKFDIGICSKLENERNIHFTP
                     IAKQELVLIVPKSHPLAEKDWIDLIETVDYPHIAFSKKSGLRPIIDDLFRKIGADYQI
                     AYEIEVDQVIAGMVAQNFGIAVVPNMPILNYVDVKVLPIRSPNWERFFYLAVAKNQTL
                     TPAAEKFKQFMLAHRI"
     gene            2570..3424
                     /locus_tag="U0280_002108"
     CDS             2570..3424
                     /locus_tag="U0280_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2272034.1"
                     /translation="MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLR
                     AENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMA
                     RLFGVKHINCGLLEKIPEEQIIVALGELCDRAEELIIGLEFMPYSGVADLQAAWRVAE
                     ACGRDNAQLICDTWHWARANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDR
                     LAPGEGYGDTVGFAKILKEHGVNPRVMGVEVISDSMVATGLEYAALKVYNATKKVLDE
                     AWPEISPR"
     gene            3493..5418
                     /locus_tag="U0280_002109"
     CDS             3493..5418
                     /locus_tag="U0280_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM2272035.1"
                     /translation="MKFNSMFSPIDIGPMKVPNRFVVSPMCNNYANTDGTLSDTSLAY
                     YKERALGGFGLITFEATVVDVRAKGGANKACLYSDHQIASFKRVIDVCHDAGAKISVQ
                     LQHAGPEGNSKVSGYPLRAASAIASAAGRNTPEAISREELYELIELYGEAALRAKKAG
                     ADAVEVHCAHGYLVSSFLSARTNKRVDEFGGCFENRMRLPRLIIESIRKRVGHSIAIL
                     CRINSTDGVEGGLSVQDSATVAAYLEDCGLDGLHVSRSVHIRDEYMWAPTVLHAGFSS
                     DLVTQIKRAVSIPVITVGRFTEPHYAELMVREGRADLVAFGRQSLADPETPNKAAAGK
                     LDELLPCIACLQGCVANMYAGKPITCLVNPLLGRESEAYSPKTPSKKVVVIGGGVGGL
                     YAGWMAGSRGHDVTVYEASDMIGGQMRLAAYPPGKGDLTNMVRSYIKKCEQFDVEIKT
                     NTPVTPELIQEVAPDAVIIATGATPLVLPIPGIEDAGLIHAVDLLDGKEKCGQKVLVV
                     GGGMVGSETAAFLGEAGHDVTVVELRDEVGADVISEHRKFLMRDFDEYKIKSVTNAKV
                     TSFFEDGVTYSLADNKEHRIDGFDSVVLAMGSRAYNPLEEAIKKMVPETYVIGDAIRA
                     RRALDATKEALDAVLQL"
     gene            5477..6346
                     /gene="aroE"
                     /locus_tag="U0280_002110"
     CDS             5477..6346
                     /gene="aroE"
                     /locus_tag="U0280_002110"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM2272036.1"
                     /translation="MENRISGTTRLLGLIGTPVDHSKSPIMYNYSFQKAGLDYAYLAF
                     DTPIEKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIVNEDGK
                     LTGHITDGLGFIANLRDASVDVTGKKMTIIGAGGAATAIQVQCALDGAKEITIFNIKD
                     AFYDKAKQTAASIKQEVPNCIVHIYDLNDTEKLTAEIATSDILVNATLVGMHPNEHET
                     PISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFTGK
                     DMPVSEVKNLYFN"
     gene            6379..7587
                     /locus_tag="U0280_002111"
     CDS             6379..7587
                     /locus_tag="U0280_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272037.1"
                     /translation="MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLS
                     DGTFDVSMVIAVIAALGLGRLLTLPISGPFSDKFGRKPSALIGVALYAVYFIGLAFAP
                     NMYIAYAFAFVGGAANSFLDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIG
                     MVAAANMSFRTLFVITMVLIVIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAI
                     IGIGFTCTSTFQLWLNCNQELGKLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILP
                     VRILILYPAIATLMLLIIYIVQTPTICLIGGFVIGYAAAGGVLQLAVSTANEFFPTNK
                     GKITSIVMISSSLANYIVLNVASYITKAGGIEGPKYVLLFNVAITVIGILLAIFVNMR
                     YKNESKIATK"
BASE COUNT         2300 a         1443 c         1610 g         2293 t
ORIGIN      
        1 ggaggtgttt gccttagcag aaactatttc tgtcaaggcg atttattgat attaaccatt
       61 aaatttttaa ttatagcttt acttattgct atatcagcat ttttcgtggc aacagaattt
      121 gcgattgtta aaatgcgacc aagccgtttg gaccaattaa ttgcggagaa agataaacgc
      181 gcagtcctcg ctagacatat ttacaatcat ttgaacgctt acttatcagc ctgccaactc
      241 gggataacga ttagttccct tggacttggt tggttggggg aatctacggt agaagcggcg
      301 ttacatccgt tatttagctt aatggaactt ccgcaatcag ctattacgat tctatccttc
      361 acgattgcct ttctatttat cacattcttg cacgtagttg ttggggaact tgtaccgaaa
      421 acactggcga ttgataaaac agaggcagtt gcacttgcgg tagctcgtcc actgcatatt
      481 ttttataaag tgatgttccc gttcatttgg attttaaatg gttctgccgt tttcatcgca
      541 cgtctttttg gtttagagcc agcttccgag cacgaaattg ctcataccga ggatgaatta
      601 aaaataatcg tcggcgaaag ttataagagt ggtgaaatca accaatcaga attccgttat
      661 gtgaataaga tttttgattt tgatgaacgt atggcgaaag aagtcatgat tccgcgaaca
      721 gagattgtta ccgttgatac gggctctact atcggggaat tatccgacat tatgcaaaat
      781 gaacgctata cgcgctatcc ggttattgat ggcgataaag accacgttat cggcgtactt
      841 aatttaaaag aaattttgtc agcatatgtt gagcatggat ctaatccaag ttttagcatt
      901 gatccttacg taaaaccaat tattcgtgtg attgaaacaa ttccgattaa agaattactt
      961 ttccgtatgc agcgtgaacg ttcccatatc gcgattttac ttgacgaata tggtggtact
     1021 tctggacttg ttacggttga agatattgta gaggaaatcg ttggtgatat ccgcgatgaa
     1081 tttgatgccg atgaaattcc agaaattcgc aaaatcaaag acggtcactt tattgtggat
     1141 gcgaaacttc ttattgatga agtaaataat attttaggta ctgaaattga ggaagaagaa
     1201 gtcgacacaa ttggcggctg gttcttaacg caaaattatg aagtagaagt tggggacgaa
     1261 attgattacg atggattcat tttccgcgta aaacaaggcg aacctcatca tattgaatat
     1321 atcgaaatca tcaaaaaaac gaatgactaa tcaaaaagta gctatccctc tcgtaggata
     1381 gctacttttt ttatatacga tgcgctaaca taaattgctt gaacttctca gctgcgggcg
     1441 ttagcgtttg gtttttcgcg actgcgagat aaaagaatct ctcccagttt gggcttctaa
     1501 ttggtaagac tttgacatcc acataattta aaatcggcat gttcggaact acagcaatcc
     1561 caaagttttg cgcgaccatt ccggcaatga cttgatccac ttcaatttca tatgcaattt
     1621 gataatcggc accaattttt ctgaacaaat catcgataat tggacgcaaa ccactttttt
     1681 tcgagaatgc gatatgcgga taatctaccg tttcgattaa atcaatccag tctttctcag
     1741 caagaggatg gcttttgggg acgatgagca ctaattcttg tttggcaatt ggcgtaaagt
     1801 gaatatttct ttcattttca agtttagaac aaataccaat atcaaatttc ttttctttta
     1861 ggccttgaat gatatcaatc gaaacacctg tatggaaaat aaaatcgatt tgtttttctg
     1921 gttcggtttg gagaaattct tgaacaagct ttggtattag agacgtgcca agtgtttgca
     1981 agaatgccaa gtcaatctgc ccttccccat tcgccgcttt tttagtcgtc gcgacacccg
     2041 catcaatcat atctaaggac tcttccacat aatcaagaaa tactttgcca gctttactta
     2101 accctatatt ccgcccttct ttttcaaata aagggatacc taattcttgc tctaaggagg
     2161 aaattgcgtg acttaaacta ggctgtgtaa tcagcaattt ttcagctgct tttgtgtaat
     2221 gctccatgtg cgccagtgtg acgaagtatc gtaaatggtg taaattcatg cttctctcct
     2281 aactaaaaag ttatctatgc aatttatcta tcaattaata gaacaatacc aatttgtttt
     2341 tatggaatag tcataataca attagactgt agttacgcca gtgaaataaa ctattcctta
     2401 aaaaccaata tacggtagaa taggttaact gtccagttcc attttcaact attgaaggcg
     2461 ttatcacatc agaggttttt aattaagcgg aattaatttt tttactggtg tttgtgaaaa
     2521 tattatcaaa gtttcttgta atttttatta tggagaggag ataattttta tgacaaatgc
     2581 aaatggcaac ctaaaaaaat gccccatcac gattagctct tatacgcttg gaacagaggt
     2641 atcttttcct aaacgagtaa aagtcgctgc ggaaaacggt tttgacggaa ttggcttgcg
     2701 tgcagaaaac tatgtagatg cactagctgc cggattaacg gatgaagaca tgttgcggat
     2761 tttagacgag cataacatga aagtaacaga agtggagtac ataactcagt ggggaactgc
     2821 cgaagatcgt acagcagaac aacaaaagaa agagcaaaca actttccaca tggcgcgatt
     2881 atttggcgtc aaacatatta attgtggttt gcttgaaaaa atccctgagg aacaaatcat
     2941 cgtcgcgctt ggtgaattat gtgaccgcgc agaagaatta attattggtt tagaatttat
     3001 gccatatagc ggtgtagcag acttacaagc agcttggcga gtagcagaag catgcggccg
     3061 agataatgcg caacttattt gtgacacgtg gcactgggct agagcaaacc aaacagcaga
     3121 atctatcaaa aacgttcccg ctgatcggat tgtttccatc caactatgcg atgtccacga
     3181 aacgccttac aaagaacttc gtgaggaatc acttcatgat cgtctagctc ctggagaagg
     3241 ctacggagat acggtcggtt ttgcaaaaat tttaaaagaa catggtgtaa atccacgtgt
     3301 gatgggagtc gaagttattt cagactctat ggtagcaact ggtttagagt atgccgccct
     3361 taaagtatac aatgccacga aaaaagtatt agacgaagca tggccagaaa tttctccacg
     3421 ctaaacacct actcgcttat gtgaaaataa taacgtagta ggaagactcc ctgtgaaagg
     3481 aatgtgttat ttttgaaatt taattcgatg ttttcaccta ttgatatcgg gccgatgaag
     3541 gtgcctaaca gatttgtcgt atcgccaatg tgtaacaact atgcaaatac agatggaact
     3601 ttatcagata cttcccttgc ttattacaaa gaacgagcgc ttgggggttt tgggcttatt
     3661 acttttgaag caacggttgt agatgtacgc gcaaaaggtg gcgcaaataa agcatgccta
     3721 tatagtgatc atcaaattgc tagttttaaa cgagtgattg atgtatgtca cgatgctgga
     3781 gcaaaaattt ctgttcagtt acagcacgct ggaccagaag gaaattccaa agtatctggt
     3841 tatcctttaa gagcagcctc agcaatcgcc tctgctgcag ggcgtaatac tccggaagcc
     3901 atttcgcgtg aagaacttta tgagttgatt gaactttacg gagaagctgc tttacgagca
     3961 aaaaaagcgg gcgccgatgc ggttgaagtt cactgcgcac atggttatct agtaagtagt
     4021 ttcttatctg cacggacgaa caaacgtgtg gacgagtttg gtggctgttt tgaaaaccga
     4081 atgcgattac ctcggcttat tattgaaagt attcgtaaac gtgtcggtca ttccatcgca
     4141 attctttgcc gaattaatag cacggatggt gtggaaggcg gactaagtgt tcaagatagc
     4201 gcaacagttg cagcttattt agaagattgt ggtttggatg gtttgcatgt ttctcgtagc
     4261 gtccatattc gtgatgaata catgtgggcg ccaaccgtat tgcatgcagg atttagctct
     4321 gatcttgtaa cacaaatcaa acgcgctgtt tctattcctg taattactgt gggtcgtttc
     4381 acagagccgc attacgcgga attaatggtt cgtgaaggcc gcgctgactt ggttgctttc
     4441 gggcgtcagt ctttagcaga tccagaaaca ccaaacaaag ctgctgctgg aaaactagac
     4501 gaattacttc cttgcatcgc ttgtcttcaa ggttgcgttg ctaatatgta tgccggaaaa
     4561 cccattactt gtttagtaaa tccgttactt ggacgtgaat ccgaagctta ttcacctaaa
     4621 actccaagta aaaaagtagt tgtcattggc ggtggtgtcg gcgggcttta tgctggatgg
     4681 atggctggat cccgtggtca tgatgtgaca gtttatgaag catcagatat gattggtggt
     4741 caaatgcgct tagctgccta tcctcctggt aaaggcgact taacaaacat ggttcgaagt
     4801 tacatcaaaa agtgtgaaca gttcgatgtc gaaattaaaa caaacacacc tgtaacacca
     4861 gaacttattc aagaagttgc cccagatgcc gtcattattg caactggcgc cactccactt
     4921 gttttgccga taccaggtat tgaggatgct ggacttatcc acgcagttga cttacttgat
     4981 gggaaagaga aatgtggtca aaaagtgctc gtagttggcg gaggtatggt tggtagtgaa
     5041 acagctgcat ttttaggtga agctggtcat gacgtcaccg ttgtagaact tcgcgatgaa
     5101 gtcggagcag acgttatttc tgaacatcgt aaattcctga tgcgtgattt cgatgaatat
     5161 aaaatcaaaa gtgttacgaa tgcaaaagta acgagtttct ttgaagacgg ggtaacctat
     5221 tccctagcgg ataacaaaga acaccgaatc gacggatttg actctgttgt tctagcaatg
     5281 ggatcaagag cctataaccc actggaagaa gctataaaaa aaatggtacc cgaaacctat
     5341 gtcatcggtg atgctattcg tgcgcgccgg gcattggatg caacaaaaga agcactagac
     5401 gctgtattac aattataatt tatcattcta ctcgctgtaa tgtgcagcga gtaggattca
     5461 ttcggaggaa aacaaaatgg aaaatagaat ttcaggaacg actaggcttc ttggcttaat
     5521 tgggacaccc gtagaccatt caaaatctcc aatcatgtat aattacagtt ttcaaaaagc
     5581 ggggttggat tatgcttacc tagcttttga cacacctatt gaaaaagttg ctgatactat
     5641 aaaagcaatc aagacattta atctgcgtgg cgcaaacgtg accatgcctt gtaaaagtga
     5701 agttttaaaa cacatggatg acctttcccc tgctgctcgg atgattggcg ctgttaacac
     5761 tatcgtaaat gaagacggga agctaactgg gcatataaca gatggccttg gttttattgc
     5821 aaatttacga gatgctagtg tagatgtcac cggcaaaaaa atgactataa ttggtgctgg
     5881 tggtgcagct acagcaatcc aagtccagtg tgcacttgat ggggccaagg aaatcaccat
     5941 ttttaatatt aaagacgctt tttatgacaa agcaaaacaa actgctgctt ccattaaaca
     6001 agaagtgcca aattgcatcg tacatattta tgatttgaac gatacagaaa aactaactgc
     6061 ggaaattgcc actagcgata tccttgttaa tgcgacactc gttggcatgc atccgaatga
     6121 acacgaaaca cctattagcg atacatccgt ttttagaaaa gaacttatcg ttgcagatat
     6181 tatttataac cctaaaaaaa cgcaacttct actagatgct gaagctgctg gttgtaagac
     6241 tgtaggcggg ttaggaatgc ttttgtggca aggcgctgaa gcatacaaat tgtttactgg
     6301 taaagatatg ccagtttcag aagtaaagaa tctatatttc aactaataaa ttcatcagga
     6361 tttcgagagg agaaaaaaat gaacgcaaaa agattttatc caacagcaat agcactttat
     6421 tttacttatt ttattcacgg tattggggta tccattcttg gccaatacaa acaagatttc
     6481 gccggagtat ggggagcaga taagctttct gatggcacat ttgacgtaag catggttatc
     6541 gcagttatcg cagcacttgg tttaggtcgc ttgctgacat taccaatttc tggacccttc
     6601 tcagataaat ttgggcgtaa accgtccgca ttaatcggtg ttgcgttata cgcagtttat
     6661 ttcatcggtc ttgcttttgc accgaatatg tatatcgctt acgctttcgc ttttgtagga
     6721 ggagcggcga actcattctt agacacagcc gtaacaccat cagttctaga aattttcaca
     6781 aaaaatggcg ccattgccaa tatgtttact aaattctcta tctctatcgg acaatttgta
     6841 ttacctttcg caatcggtat ggttgcggcg gcaaatatgt cattccgcac actattcgtt
     6901 attacaatgg tcttaatcgt tattgatggc ttaatcatcg catttatgcc attccctcca
     6961 atgaacaata atgttggcgg cgaaaaagca aaaccagaaa aaatgaaatt caatgcaact
     7021 agttgggcta taatcggtat tggttttacg tgtacatcca ctttccaact atggctaaac
     7081 tgcaaccaag aacttggaaa attatacggt atggctgatc caagtaaaat tcaatcattc
     7141 tactcactag gaacaatgtg cgcaattcta attaccgctg ttctcgtgaa aaaatttatt
     7201 ttgccagtcc gaattctaat cctatatcca gcaattgcca ctttaatgtt gctaattatt
     7261 tatatcgtac aaacaccaac catttgctta attggtggat ttgttatcgg atacgctgct
     7321 gctgggggag ttctacaact agctgtatca actgccaatg agtttttccc aacaaacaaa
     7381 gggaaaatca cttcaattgt catgatttct tccagtctag caaactatat tgttttaaac
     7441 gttgcaagtt atattactaa agctggtggt atcgaaggtc cgaaatatgt gttattattc
     7501 aatgtagcga taactgttat tggtatccta ctagcaatct ttgtcaatat gcgttacaaa
     7561 aacgaatcta aaattgctac taaataattt attgttcaac tgagcattta tgatgctcag
     7621 ttgaacttac atatcatttg tgaagt
//
LOCUS       DASDXX010000130         7624 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.130, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000130 DASDXX010000000
VERSION     DASDXX010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7624
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.130"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            96..2408
                     /locus_tag="U0280_002112"
     CDS             96..2408
                     /locus_tag="U0280_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2272038.1"
                     /translation="MKKLVKSAVVFASLVFIGTSATMITEKASAASIDPVQKADGQAT
                     YIPKGVRDGTATEEHDGFEDGTNSVLQQVPLLRATTGYPDVNAYIKSNKFSTAKIEKQ
                     LKSQFPKFNYRNGYGKPEGIVIHETANNSSTITGEINYMSTNYNNAFVHAFVDKSRII
                     QIHPTENGVWGAGQYANARFIQVELVRSKTFDEFARSINNYAYYAAYLLDQYNLPVDS
                     AHSDGKGTVWSHDAVTRYLGGTTHTDPVSYFNQWGYNFNSFVTLINEKYKAIQASKVT
                     YDKIEYDKGVTAYARVKTAPGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTPI
                     TTWYQFSIDGKVIGWVDTRALDTFYKQSMEQPANLTRYVASNKTGEAYYKVPVVDADV
                     KWGTLAAYKDQKLTVDKQATVEGQLWYRVRTSTTFIGWTKASNLTATSPFDKIEYDKG
                     VTAYARVKTAPGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTVITTWYQFSID
                     GKVIGWVDTRALDTFYKQSMEKDTNLTRYVIANKVNEAYYKVPVVDADVRWGTLAAYK
                     DQKLTVDKQATVEGQLWYRVRTSTTFIGWTKASNLTTTTPYDKIEYDKGATAYARVKT
                     APGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTVITTWYQFSIDGKVIGWVDT
                     RALDTFYKQSMEKDTNLTRYVIANKVNEAYYKVPVVDADVRWGTLAAYKGQKLTVDKQ
                     ATVEGQLWYRIRTSSTFIGWTKASNLSATK"
     gene            complement(2461..4059)
                     /locus_tag="U0280_002113"
     CDS             complement(2461..4059)
                     /locus_tag="U0280_002113"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEM2272039.1"
                     /translation="MTKYIFVTGGVVSSIGKGITAASLGRLLKNRGLSVTIQKFDPYI
                     NVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKVYSEVIKKE
                     RRGDYLGGTVQVIPHITNELKDRVFRAARMTNSDIIITEIGGTVGDIESLPFLEAIRQ
                     IKSDVGAENVLYIHTTLIPYIKAAGEMKTKPTQHSVKELRSLGIQPNIIVVRTEQPVS
                     QEMKDKIALFCDIKASEVIESRDEETLYNVPLSLQKQKMDDIVLEHLQLEAPQAEMTD
                     WKNLVHRVKNLSKKVRIGLVGKYVSLQDAYLSVAEALRHAGYDHDAEIEIDWIDSEKV
                     TKENVAEIMKDVDGILVPGGFGDRAIEGKIAAIEYARVNKVPYFGICLGMQLATVEFA
                     RNVLGLEGAHSAEIEPETKHNIIDLLPEQKNIENMGGTLRLGLYPARIKQGTKAEAAY
                     GTTLVEERHRHRYEFNNEYREQMEEAGMIVSATSPDGRLVEVVELADHPWFVACQYHP
                     EFISRPNRPQSLFKDFVGAALNNK"
     gene            complement(4424..4960)
                     /locus_tag="U0280_002114"
     CDS             complement(4424..4960)
                     /locus_tag="U0280_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HEM2272040.1"
                     /translation="MDLKNLTQEERSELSLIDVAHFILEQRKETILFPELVKEIQAFL
                     GLKDAEIRERLVQFYTDMNIDGNFISLGNNTWGLRAWYPMDAIDEEVQTQTTPKKKRK
                     SDDDDDEDEEILDDDVDYDDEEIVEELGEEEISLADVLLDEDEDDDDHLPDGIEGDLA
                     TVEDDYTDGDYTEDPEDK"
     gene            complement(5326..6996)
                     /locus_tag="U0280_002115"
     CDS             complement(5326..6996)
                     /locus_tag="U0280_002115"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEM2272041.1"
                     /translation="MNVMQENQIKLIEHIKQGVVQAVGLEEAEVPEILLEVPKDKKHG
                     DYSTNIAMQLARVAKKAPRQIAESIVPELKKDNKLIKEVEIAGPGFINFYLDNAYLTD
                     LVPVILTEDKKYGESDFGKGEKFQIEFVSANPTGDLHLGHARGAAIGDSLANIMKMAG
                     FDVSREYYINDAGNQINNLVLSAEARYFEALGLDSEFPEDGYRGADIISLGKDLAAKY
                     GDKYVHTSEEERRSVFRVDALAFETGKLRADLEEFRVSFDEWFSETSLYEENKVLPAL
                     ERLRENGYIYEQDGATWLRTTDFEDDKDRVLIKSDGSYTYFLPDIAYHLNKLERGFDV
                     LIDIWGADHHGYIPRMRAAIEALGYSPNQLEVEIIQLVHLFEDGVQVKMSKRTGKSVT
                     MRDLIEEVGLDATRYFFAMRSSDTHMNFDMSLAKSTSNDNPVYYVQYAHARISSILRS
                     GKEQGLEVTKDADMSLLQTEAEYDLLKVLGEFADVVAEAATKRAPHRIVRYLNDLASS
                     FHRFYNSNKVLDMDNLEVTKARLALIKTAQITLRNGLTLLGVSAPEKM"
     gene            complement(6993..7442)
                     /locus_tag="U0280_002116"
     CDS             complement(6993..7442)
                     /locus_tag="U0280_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HEM2272042.1"
                     /translation="MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRY
                     LHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLE
                     SELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE"
     gene            complement(7520..>7624)
                     /locus_tag="U0280_002117"
     CDS             complement(7520..>7624)
                     /locus_tag="U0280_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEM2272043.1"
                     /translation="ALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF"
BASE COUNT         2331 a         1552 c         1359 g         2382 t
ORIGIN      
        1 tatccattga ctacaaccag gcgtgttgtc ataattagaa atagaatact tttatttaat
       61 ataaaaagta gtgcagttag gagaggattt aaactttgaa aaaattagta aaatcggcgg
      121 ttgtttttgc aagccttgtt tttattggca cctccgctac tatgattaca gaaaaagcaa
      181 gtgctgcttc cattgatccg gtgcaaaaag cagatggtca agctacttat atccccaaag
      241 gagttagaga tgggactgca acggaagaac atgacggctt tgaagatgga actaatagcg
      301 tactacagca agtccctttg cttcgcgcaa caacaggata ccctgatgtt aatgcctata
      361 ttaaatcaaa caaattttca acagcaaaaa tagaaaaaca attaaaaagc caatttccta
      421 aattcaacta tcgtaatggt tacggcaaac cagaaggaat agttattcat gaaacagcaa
      481 ataattcatc tactattaca ggtgaaatca attatatgag taccaactac aacaatgcct
      541 ttgttcacgc ttttgtagac aagtctcgta taatccaaat ccatcctact gaaaatggtg
      601 tttggggagc aggacaatat gctaatgctc gttttatcca agttgaatta gttcgttcga
      661 agacattcga tgaatttgct cgttctatta ataactatgc ctattatgct gcgtaccttt
      721 tagatcaata taaccttcct gttgatagcg cgcacagtga cggcaaagga acagtctggt
      781 cccacgatgc agttacacgt tatttaggcg gaacaaccca tactgatcct gtttcttatt
      841 tcaaccaatg gggttataat ttcaatagtt ttgttacatt gattaatgaa aagtacaaag
      901 cgattcaagc tagcaaagtt acttacgaca aaatcgaata cgataaaggc gtcacagcct
      961 acgctagagt taaaactgca cctggtaatg cagtttggac aaaaccttac agaacagaag
     1021 gctcgaaact agttaatcaa ctttctgtct accaaggtaa aaacatgcgg atcttgcgtg
     1081 aagctaaaac accaattact acttggtatc aattcagcat tgacgggaaa gtaatcggtt
     1141 gggttgatac tcgtgcactc gatacgttct acaaacaaag catggaacaa ccagctaatt
     1201 taactcgcta tgtcgcttcc aacaaaactg gtgaggccta ctacaaagta cctgttgttg
     1261 atgcggatgt caaatggggc actttagctg cttataaaga tcaaaaacta accgtggata
     1321 aacaagcaac ggtggaaggg caactttggt atcgcgttag aacaagcact acctttattg
     1381 gttggacgaa agcttccaac ttaacagcta cctctccatt tgataagatt gaatacgata
     1441 aaggtgtcac agcctatgct agagttaaaa ctgcacctgg taatgccgtt tggacaaaac
     1501 cttacagaac ggaaggctct aaacttgtca atcaactttc ggtctaccaa ggcaaaaaca
     1561 tgcggatctt gcgcgaagct aaaacagtaa ttactacctg gtatcaattt agtattgatg
     1621 ggaaagtaat cggttgggtt gatactcgtg cactcgatac gttctataag caaagcatgg
     1681 agaaagatac taatttaact cgctatgtga ttgcgaacaa agtaaacgaa gcgtactaca
     1741 aagtgcctgt tgtggatgcg gatgttagat ggggcacttt agctgcttat aaagatcaaa
     1801 aactaaccgt ggataaacaa gcaacggtcg aaggacagct ttggtaccgc gttagaacaa
     1861 gcactacttt tatcggttgg acaaaagctt cgaacttaac aacaactacg ccatacgata
     1921 aaattgaata tgataaaggc gccacagcct atgctagagt aaaaactgcg ccaggcaatg
     1981 ccgtttggac aaaaccttac agaacggaag gctctaaact tgttaatcaa ctttcggtct
     2041 accaaggtaa aaacatgcga atcttgcgcg aagctaaaac agtaattact acctggtatc
     2101 aattcagcat tgacgggaaa gtaatcggtt gggttgatac tcgtgcactc gatacgttct
     2161 ataagcaaag catggagaaa gatactaatt taactcgcta tgtgattgcg aacaaagtaa
     2221 acgaagcgta ctacaaagtt cctgttgtag atgcggatgt tagatggggc actttagctg
     2281 cttacaaagg tcaaaaacta accgtggata aacaagcaac ggtcgaaggg caactttggt
     2341 atcgaataag aacaagctcc acctttattg gttggacaaa agcttcgaac cttagtgcta
     2401 ctaaataata ataataaaaa tctcccagcc aattatggct gggagatttt tattattacc
     2461 ttatttatta ttaagtgcag cgccaacaaa atctttaaac aagctttgcg gacgatttgg
     2521 acgagaaatg aattctgggt gatattgaca agcgacaaac caaggatgat cagctaattc
     2581 aactacttca actaaacgac catctggact tgttgcagaa acaatcatac cagcttcttc
     2641 catctgctct ctatattcgt tattaaactc ataacgatga cggtgacgct cttcaacaag
     2701 agttgtacca taagcggcct cggctttagt accttgctta atacgcgctg gataaagtcc
     2761 taaacgaagt gttccgccca tgttttcgat gttcttttgt tctggtaata aatcaatgat
     2821 gttatgtttt gtttctggtt cgatttctgc agaatgagct ccttcaagac caagaacatt
     2881 acgggcaaat tcaacagttg ctagttgcat tcctaaacaa ataccaaaat aaggcacttt
     2941 gtttacgcgt gcatattcaa tagcagcaat tttaccttca atggcacggt cgccgaaacc
     3001 accaggaact aagataccat caacgtcttt catgatttca gcaacatttt cttttgttac
     3061 tttttcggaa tcaatccagt caatttcgat ttctgcatca tgatcatatc ctgcatgacg
     3121 aagtgcttct gctacagaaa ggtaagcatc ttgcaaggaa acatatttac caactaggcc
     3181 aatacgaact tttttggaaa gatttttcac acgatgtact aagtttttcc aatccgtcat
     3241 ttccgcttgt ggtgcttcta attgtaagtg ctcaaggacg atatcatcca ttttttgttt
     3301 ttgtagagaa agtggtacgt tataaagtgt ttcttcatcg cgagattcaa taacctcgga
     3361 agctttaata tcacagaata gcgcaatctt atctttcatt tcttgtgaaa ctggctgctc
     3421 tgtgcgaaca acgataatgt ttggttgaat tcctaagcta cgaagctctt ttacactatg
     3481 ttgtgttggt ttagttttca tttcgccagc tgctttgatg taaggaatta aagttgtgtg
     3541 gatataaagt acgttttctg caccaacatc acttttaatt tggcgaattg cttctaagaa
     3601 tggtaaagat tcgatatccc caactgttcc accaatttca gtgatgataa tatctgaatt
     3661 ggtcatgcgc gctgcacgga aaacacggtc ttttaattcg tttgtaatgt gtggaataac
     3721 ttgcactgtt ccacctaagt aatccccgcg acgttctttt ttaataactt ccgagtaaac
     3781 tttaccagtt gtcacgttgc tgtatttatt taagttaata tcgataaaac gttcgtaatg
     3841 gccaaggtct aggtccgttt ccgcgccgtc atctgtcaca taaacttccc cgtgttggta
     3901 tggactcatt gttcctggat ctacgttgat gtatggatca aatttttgaa tggttacact
     3961 aagtccacga tttttcagca aacgtccgag tgatgctgct gtgattcctt ttccgattga
     4021 cgaaactacg ccacctgtaa cgaaaatata ctttgtcatg ttaaaaaaat ctactccttc
     4081 ctgaaatgaa aaacttgcag ggtctgacga ttttcctgct ggggtgggaa attgccagat
     4141 aaaacaatat tgtgattatc tctctagcac acaaatcaca atttcaagta ttttgtaaac
     4201 caaaataaaa aacactccgc ctacttttaa aagtaaggga gcgctgattc tcataaatat
     4261 ccgtccctat aaaagggagc ccaaataaaa tactactaat gatggcgata gaagtcaagt
     4321 ctttatttta tgaaaccgcc atcaatccat taagtaggct aaaaaaaatc agacagacac
     4381 ttttccacaa aaatggacgc atctatctga ttaaaattag ttattattta tcttctgggt
     4441 cttctgtata atccccgtcc gtataatcat cttctacagt tgctaagtcg ccttcgattc
     4501 cgtctggcaa gtgatcatcg tcatcttcgt cttcatcaag taagacatct gcaagagaaa
     4561 tttcttcttc accaagctct tccacgattt cttcatcatc gtagtccacg tcatcatcca
     4621 agatttcttc atcttcatcg tcatcatcgt ctgatttacg ttttttcttc ggtgttgttt
     4681 gtgtttgaac ttcttcatca atcgcatcca ttggatacca tgcacgaagt ccccacgtgt
     4741 tgtttcctag tgaaataaag tttccatcaa tattcatatc tgtataaaat tgaacaagac
     4801 gctcccttat ttctgcatct ttcaaaccta ggaacgcttg aatctctttc actaattcag
     4861 ggaaaagaat agtttctttc cgctgttcca aaataaaatg tgcaacatca attaaagata
     4921 gttcactacg ttcttcttgc gttaagttct ttaaatccaa aactggcacg ccctttctat
     4981 cgtaattcca atttatttag ctgttatttt ttcgttcagc ccaacttcac tattttacat
     5041 gttatttctg gcaagtacaa cctaaatttt cttaattaca tcaattcttc ttgactattt
     5101 gatatccgat gtaaaagaaa aggatggcca ttaaaagaat tgggattgat ccaagttgaa
     5161 agtcgtagag aatatagatt gcgacgcaca gaaacacgaa aagcagcgcc aaaattatta
     5221 atcgcttcat catatgctct ccccgttttt tcaattacct atgtttctat taactttagt
     5281 acattttggt tatgacgtca acgagtaacc tataaattta ggatatcaca ttttttctgg
     5341 tgctgataca cctaaaagcg tcaaaccatt tctaagggta atttgcgcag tcttaataag
     5401 tgctagtctt gcttttgtta cttctaaatt atccatatca agtactttat tgctattgta
     5461 gaaacggtgg aaggaagacg ctaaatcatt taagtagcga acgatacggt gtggcgctct
     5521 ttttgtagca gcttccgcaa caacatccgc gaactcacct aacactttta ataaatcata
     5581 ttctgcttct gtttgcagta agctcatgtc tgcgtctttt gttacctcta gaccttgttc
     5641 tttaccagaa cgtaaaatgc tagaaattct ggcgtgcgca tattgtacat aataaactgg
     5701 attatcatta gatgtagatt tcgctaagct catatcaaag ttcatatgtg tatctgaact
     5761 acgcattgca aagaaatatc ttgttgcatc cagtccaact tcttcaatta agtcacgcat
     5821 tgtaactgat ttaccagtac gtttactcat tttaacttga acaccgtctt caaataagtg
     5881 aactagctga atgatttcta cttctaattg atttggtgag tagccaagcg cttcaattgc
     5941 agcacgcata cgaggaatat agccgtggtg atcagctccc caaatatcaa ttaacacatc
     6001 aaagccacgc tctaatttgt ttaagtggta cgcgatatct ggtaagaaat acgtataact
     6061 accatctgat ttgattaaaa cacggtcttt gtcatcttca aaatcagtcg ttcttaacca
     6121 tgtcgcgcca tcttgctcat aaatatagcc attttcgcgt aaacgttcta acgctggtaa
     6181 tactttattt tcttcgtata aagaagtttc tgagaaccac tcatcaaagg aaacgcggaa
     6241 ttcttctaag tcagcgcgta attttcctgt ttcaaacgct aatgcatcta cacggaaaac
     6301 ggaacggcgc tcttcttcgc ttgtgtgcac atatttatcg ccgtatttag cagctaaatc
     6361 tttcccaagc gaaataatat ccgcaccacg gtagccatcc tctgggaatt cagaatctaa
     6421 acctagtgct tcaaagtaac gcgcttctgc tgaaagaact aaattattaa tttgatttcc
     6481 agcatcatta atgtagtatt ctcttgaaac atcaaatccg gccattttca taatatttgc
     6541 taacgagtcg ccaattgctg cgccacgagc atgtcctaaa tgcaagtcac cagttgggtt
     6601 cgcggaaaca aattcaattt ggaatttttc tcctttacca aaatcagact ctccgtattt
     6661 tttatcttcg gttaaaatca caggaactaa atcagttaaa taagcattat ctaggtagaa
     6721 gttgataaaa cccggcccag cgatttctac ttctttaatt aatttgttgt ctttttttag
     6781 ttctggaacg atactttcgg caatttggcg aggggctttc ttagctactc tagcaagttg
     6841 catcgctata ttagtcgaat aatctccatg ctttttatct tttggtactt ctagtaaaat
     6901 ttctggtact tccgcttctt ctaaaccaac cgcttgaaca actccttgtt tgatatgttc
     6961 aattaatttg atttggttct cttgcatgac attcattctg cgtcctcctc tattttcatt
     7021 aaaacagtat atgagccaat gtattcgccg tggcttagca aatcatattg aaatgcgact
     7081 tcactcagta catcaggctt attttcatat agttcttcca ttgatactag ttctgattct
     7141 aattgtaatt tccctgctcc ggaatcaaca gacgcagtac ttctcctatt atctcggaaa
     7201 aagtgcattc tcatatttac ggcaccactt ctcattaaaa gtagttcgtt gtcagcaatt
     7261 tttagaaccg tacgaattgt tccagctaat tgtttttcct cataatgcag ataacgattg
     7321 cctttatcgc ggtaaaaaac acccgaaaca gacatatcgg atttctcttc tgcatccatc
     7381 tgacggatga cattggtgat atgaatagtt actttttttc gttccatttg gttggcagtc
     7441 atatcgctta tttacccctt tccggtcaga agaatagacg cattatatta tagtgaaaaa
     7501 taacatgaaa agcaacaggt taaaatgatg tcagaccaaa tattgtcaaa atcacattta
     7561 aaacaaatgg aataacggta ttaaaaattg gttgaatcgt aaattctgaa ataggtgtta
     7621 atgc
//
LOCUS       DASDXX010000131         7481 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.131, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000131 DASDXX010000000
VERSION     DASDXX010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7481
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.131"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            56..361
                     /locus_tag="U0280_002118"
     CDS             56..361
                     /locus_tag="U0280_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272044.1"
                     /translation="MFSVFFKRLFPSNFSVSEEAFYYKEKAYPYSEYLIECDAKLIRF
                     NGGSRGMPYYRIVIINKDTRAEKLIRVYNAERRYKNANKHMQELMEELRNEINQYQA"
     gene            389..862
                     /locus_tag="U0280_002119"
     CDS             389..862
                     /locus_tag="U0280_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM2272045.1"
                     /translation="MKSYPFFKYNMNIKTFFMFIVCFAILSLGLYFFITFESLRIWQF
                     FGIYTFFSAYTIYVLTTYVNGTVSVNSHALFYKKGFSDKKYLFNQYMLECDTRLHGRT
                     TSFLPFYTINILDLETGKETKIKIRNAAIVHRNGRKNFHLEIVNLAEQLKKIQAK"
     gene            complement(902..2950)
                     /locus_tag="U0280_002120"
     CDS             complement(902..2950)
                     /locus_tag="U0280_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HEM2272046.1"
                     /translation="MEIFLYVLALLVAIFISNLLNRFVPFVSVPLIQIGLGVLIAIMP
                     ITFDLQLNPELFLVMFIAPLLFNDGRQTDKAALWGMRMPILVLALGLVFATVVVIGYF
                     VHWMIPTIPLAAAFALAAALAPTDAVAVSSLSGRINLPKRIMNLLEGEALINDASGLV
                     AFQFAIAAMVTGVFSFMDASISFFVIAIGGILVGLILSWLKFRLLKWVRGLGMEDVTF
                     HMLIQILTPFIIYLAAEEIHVSGILAVVAAGIMHSMEQKKMDPQSVKLNVVSQSTWSV
                     IIFVLNGLVFLLLGTQLPAITEVVWNDSGSSNLQVMAYILSITAALILLRFLWVYISW
                     SIGAKQRQKQNKKTQLPKFRPVVLTSLSGVRGAVTLASALAIPFFLDDGSLFPQRSLI
                     IFIASGVILCTLVIATFILPLLAKSEEVTTEDERAETATRIRILRNVIRELKEQTLPE
                     TKAATDEVIEDYRRRIYDLQQNNSSNRGMDERERAKRLEIIQWERENTQKMTDEGRIV
                     ATDSYRYQHYLNMMEQAIKQRFRTKIKTAWMFLYRLIMLVIHPKKWGRITHKVKKGIS
                     KDSERFQAIRQLREENEVLIISKLKEQLTKENVDIIGPLITEHTIFLERVRKEHSPRG
                     KRAKFEQKKREVQVLAFQLERDIIQNMFEKGGISRDLARDLRQNLNMIETYLYDDFLE
                     "
     gene            complement(3079..3717)
                     /locus_tag="U0280_002121"
     CDS             complement(3079..3717)
                     /locus_tag="U0280_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM2272047.1"
                     /translation="MEQPSVDELKNWRNVMLLHRFALEEVNTKLKILNEEFQFIHDYN
                     PMEHLKSRVKSLESIGAKLEKKKVDITPENALKYVHDIAGIRITCSFVSDIFRIHEML
                     AGQSDITIKRVKDYVTNPKPNGYRSLHLLCEVPVFLTNRSEKMTVEIQIRTVAMDFWA
                     SLEHKIYYKYQQEAPIELVKELQDAARIITHLDEKMKNLNDQIDQYKKEKEK"
     gene            complement(3872..4225)
                     /locus_tag="U0280_002122"
     CDS             complement(3872..4225)
                     /locus_tag="U0280_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272048.1"
                     /translation="MYITFTDSAKNRLAALRSNLEGRLHLYYDTEGCSCENSGIFTLR
                     LVEEKTAEDDEIESNIGPVLIKRWTEMFLEEALTIDYNDTEKTMILKSDGQYYNRNLL
                     LVTNTDEVISCPVTS"
     gene            4378..5139
                     /locus_tag="U0280_002123"
     CDS             4378..5139
                     /locus_tag="U0280_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue-light photoreceptor"
                     /protein_id="HEM2272049.1"
                     /translation="MTAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENIT
                     GYAKEEALGSNCHFLQGDDTDKKEVAKIRHAINEKSTANVLLKNYRKDGTSFMNELTI
                     EPIYDDHNHLYFVGIQKDVTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGS
                     LTHDRFQHMSEYVSEYMDHGKEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELI
                     ITGISPKFAMTLIRYEENLASLTTYSTIKEALQFY"
     gene            5495..6955
                     /locus_tag="U0280_002124"
     CDS             5495..6955
                     /locus_tag="U0280_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2272050.1"
                     /translation="MKKETHGEIRRDLKTRHLSMIAIGGSIGTGLFLASGNAIHTAGP
                     GGALVAYIAIGIMVYFLMTSLGEMATYMPVSGSFSTYASRFVDPAFGFALGWNYWFNW
                     AITLAVDISTAAIIVQFWLPNTPAWLWSAIFLILIFGLNALSVKAYGESEYWFSIIKV
                     ATVIIFLIVGVLTIVGILGGEVIGFSNFTAGDAPFKGGFFAILGTFLIAGFSFQGTEM
                     VGIAAGESATPETSVPKAIKQVFWRILLFYIFAIFIIGMIIPYTNPNLLSAEATDVAI
                     SPFTLVFEKAGLAFAASVMNAVILTSVLSAGNSGLYASTRMLWAMARDKKAPKFLGKV
                     NRRGIPMAALIVTTIVGAMTFITTLTENGTVIYTWLLSASGLTGFIAWVGIAISHYRF
                     RKAFIKQGHDLSELKYKAKFFPFGPILALILCILVIVGQDYAAFLKPEFTNPAWWQKI
                     GISYIGLPIFLVFWLSFKFTNKTKVIPLEDCKFDQK"
     gene            complement(7007..7468)
                     /locus_tag="U0280_002125"
     CDS             complement(7007..7468)
                     /locus_tag="U0280_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2272051.1"
                     /translation="MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLA
                     MINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKL
                     SKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKKSK"
BASE COUNT         2220 a         1443 c         1337 g         2481 t
ORIGIN      
        1 aatgacactt ccggtaccat gggaatattt tgttattctt tttgtcatag ccctcatgtt
       61 ctcagtattt ttcaagaggc tttttccaag taacttttct gttagtgaag aagcttttta
      121 ctataaagaa aaagcatatc cttatagcga atatcttatc gaatgcgatg ctaaattaat
      181 tcgctttaat ggaggctcca gagggatgcc ttactatcga attgttatca taaataaaga
      241 tacacgcgca gaaaaactaa ttcgagtata caatgcagag cgtagataca agaacgcaaa
      301 taagcatatg caagaactaa tggaagaact gcgtaatgaa atcaatcaat atcaagctta
      361 actaaaacat cttaggtggt gcacaaaaat gaaaagctac cctttcttta aatataatat
      421 gaatatcaaa acatttttta tgtttattgt ttgttttgca atacttagcc ttggactgta
      481 tttttttatt acctttgagt cactccgtat ttggcaattt tttggtatat ataccttttt
      541 tagcgcgtat actatttacg tactgactac ttatgttaat ggtactgttt ccgttaatag
      601 tcatgcgctc ttttataaaa aagggttttc ggataaaaag tatcttttca atcaatatat
      661 gctggagtgt gacaccagat tgcacgggcg gaccacttct tttcttccct tttacacaat
      721 caatattctt gatttagaga caggtaaaga aacaaaaatt aagattcgta atgcagctat
      781 cgttcacaga aatggcagaa agaacttcca tttagaaata gtaaatctcg ccgaacaatt
      841 aaaaaaaata caagctaaat agaaagccct aagaacaaga cactgttctt agggcttttt
      901 gtcattctaa aaaatcatca tataaatatg tttcaatcat atttaaattt tggcgtaagt
      961 ctcgggctaa gtctctcgag atcccgcctt tttcaaacat attctgaata atatcacgtt
     1021 ctaattggaa agccagcact tggacttcgc gttttttctg ttcgaatttt gctcgcttac
     1081 ctcttggact gtgctctttt cttacgcgtt ctaggaaaat agtatgttcg gtaattaatg
     1141 ggccaatgat atcaacattc tctttcgtta gttgttcttt gagtttagaa ataatgagta
     1201 cttcattttc ttcgcgtaat tggcgaattg cttggaatcg ttcgctgtct ttagaaatac
     1261 cttttttcac tttatgcgtg attctacccc attttttcgg gtgaatgaca agcattatta
     1321 gacgataaag gaacatccag gctgttttta tttttgtccg gaagcgctgt ttgatcgctt
     1381 gttccatcat attaagatag tgttgataac gatagctatc tgtagcaaca atgcgtcctt
     1441 catcggtcat tttttgggtg ttttcacgtt cccactggat gatctctaat cgtttggcac
     1501 gttctctttc atccatgcct cgattcgaac tattattttg ctgtaaatcg taaattcgtc
     1561 tgcgataatc ttcaattact tcatccgttg ccgctttcgt ttcaggtagc gtctgttctt
     1621 ttaattccct gattacgttt ctcaggattc gaatccgggt tgcagtttca gctcgttcat
     1681 cttccgttgt cacttcttca cttttggcaa gtaacggtaa aataaatgtc gcaatcacta
     1741 atgtacaaag aataacacct gatgcgataa aaataattag cgagcgctgc ggaaatagtg
     1801 atccgtcatc taagaaaaac gggattgcga gcgcactggc aagtgtaact gccccgcgaa
     1861 caccagaaag cgatgtaagt acaacgggtc taaacttagg tagctgtgtt tttttatttt
     1921 gtttctgtct ttgttttgcg ccgatgctcc acgatatgta tacccataaa aagcgcagta
     1981 aaattaaggc agctgtgata gacaaaatgt aagccatcac ttgtaaatta ctacttcctg
     2041 aatcattcca aactacttct gtaatcgcag gaagttgtgt gcctaaaagt aaaaatacta
     2101 aaccatttaa aacaaaaatg atcaccgacc aagtactttg cgaaacgaca tttaatttca
     2161 ccgactgagg atccattttc ttttgttcca tcgagtgcat aattccggct gcaacaactg
     2221 ccaaaatccc agaaacatgg atttcttctg ccgctaagta aataataaat ggtgttaaaa
     2281 tttggataag catatgaaac gtaacatctt ccatgccaag gccgcgaacc cattttaaca
     2341 atcggaattt taaccaactc aaaatgagcc caactaaaat accaccaatc gcaatgacaa
     2401 aaaagctaat acttgcatcc ataaaactga aaacgccggt caccatcgct gcaatcgcga
     2461 actggaatgc cacgagtcct gacgcgtcgt tgattaatgc ctcaccttcg agcaaattca
     2521 taattcgttt cggtaaatta atccgcccag aaagagaact aactgctaca gcatccgttg
     2581 gcgcaagagc cgctgctaag gcaaaagctg ctgctagtgg aatcgtcgga atcatccagt
     2641 ggacaaaata tccaatcacg acaaccgttg caaatacaag tccgagcgct aatactaaaa
     2701 tcggcattcg cataccccaa agagctgctt tgtccgtctg tcttccgtca ttaaatagca
     2761 atggcgcaat aaacatcact agaaaaagtt ctggatttaa ttgcaaatca aacgtaatcg
     2821 gcataatggc aattaataca ccaaggccaa tttggattag tggtaccgaa acaaagggaa
     2881 caaaccggtt gagtaaatta gaaataaaga tggccacaag taatgctaaa acatataaaa
     2941 atatctccaa tatgtatcgt cccctttcgt tttttctcct atattattat gaagcaaaat
     3001 aacctaactc gcaaatataa aacagcttta tttctatgca tccatcccgc ttgcaaagaa
     3061 ataaagctcc ctattagatt atttttcttt ttctttttta tattgatcaa tttgatcgtt
     3121 taagtttttc attttttcat ctaaatgggt gataattcgt gcggcgtctt gtaattcttt
     3181 tactaactca attggtgctt cttgttgata tttataataa attttatgct ccaaactcgc
     3241 ccaaaaatcc atggcaactg tccgaatttg gatttccacg gtcattttct cggaacgatt
     3301 tgtcaggaat acaggtactt cgcaaagtaa atgtaaactc cgatagccat taggttttgg
     3361 attcgttaca tagtccttta ctcgtttgat agtgatatca ctttgccctg caagcatttc
     3421 gtgaattcta aaaatatctg aaacaaaaga acaagtaatc cgaatgcccg caatatcgtg
     3481 tacatatttt agtgcatttt ctggcgtgat atccaccttt ttcttttcta attttgctcc
     3541 gatactttct agtgacttca cacgtgactt caaatgttcc attggattat aatcatgaat
     3601 aaattgaaat tcttcattca atatcttaag tttcgtgttg acttcttcta acgcaaaacg
     3661 gtgaagaagc ataacatttc gccaattttt tagctcatct actgatggtt gttccatgag
     3721 gacactcctt ccatatgtat aaacttccta ttccatgtta ctacaaaacc gaggtcagtg
     3781 taactatatg tctaaagttt caccactttc tcatgaaatt ttcataaaaa agcctagaat
     3841 aaaaaattta ttctaggctt ttcttctatt attatgaagt taccgggcaa ctaattactt
     3901 cgtctgtatt tgtgacaagc agtagattac gattataata ctgaccatcg ctttttagaa
     3961 tcatggtttt ttctgtgtcg ttgtaatcga tagttagcgc ttcttctaaa aacatttctg
     4021 tccatcgttt aattagcact ggaccaatgt ttgattcaat ttcgtcatct tccgctgttt
     4081 tctcttctac taatcgcaat gtgaaaatac cgctattttc gcaagaacag ccttctgtat
     4141 cataatacaa atgtagccgc ccttctaaat tcgaccgtag tgcagcaagc cgatttttag
     4201 cgctatctgt aaatgttata tacataactt atcacctcta gctctattat acacccacat
     4261 ttccaacttt acctccgcac tgctcacata cgattaattt cacaaattat acattgggtt
     4321 ttcattcatt tgcgtggtat gatagaaatg tatttacaaa gggggagaaa cacgcagatg
     4381 accgcttatc cacaattcga tgttatttta aaagcattaa atttgtctag cgtaggagta
     4441 attattacag atcctgagca aaaagataat ccaattattt ttgttaacac tggttttgaa
     4501 aatattaccg gctatgctaa agaagaagca cttggctcca attgtcactt tttacaagga
     4561 gatgatactg acaaaaaaga agttgcaaaa atccgtcatg ccattaacga aaaatcaact
     4621 gcgaatgttt tactaaaaaa ttaccgaaaa gatggtactt cttttatgaa tgaacttacg
     4681 attgaaccga tttacgatga tcataatcat ctctattttg ttggcattca aaaagatgtg
     4741 acgacagagc acgactatca gctggaactc gagaaatcat taacagaaat cgagaaactt
     4801 tccacgccaa ttgttccgat taaagaaaac atttgtgtgt taccactgat aggctcgcta
     4861 acacatgacc gttttcagca tatgtctgaa tatgtgagtg aatacatgga ccatggcaag
     4921 gaagattatt tgattatgga tctttctggt ttagctgaat ttaatgaaga tgcggtaatg
     4981 aatcttgtga agttccacgg atttatgaaa ttaactggtg tagagctcat catcaccgga
     5041 atatcgccaa aattcgccat gacattaatt cgctacgaag aaaacctagc cagcttaact
     5101 acatacagca caatcaaaga agcattacaa ttttactaaa agatattgca aaatagcccg
     5161 ttttccgtta ttatgggtaa ataatcaaat ataaaccctc atccaaatgg tgaggtagag
     5221 gttgcgagat gcactagtaa ttttttcgag gcgaaacaaa gacgccgacg acaaagaatg
     5281 aacaggttga tcgccgaagt gactattttc tctttgttta gaaatagttg ttgggacagt
     5341 ttcctaaagg ggctggactg ctataagaat ttgtcgaaat ttcttatagg tgtgctatct
     5401 gacaaaatga tgttggtaaa atacgtaaca gccaatttct tgcagattgg ctgtttttgc
     5461 gcacttcctc tgataataga aagggagatt aatagtgaag aaagaaacac atggcgagat
     5521 tcgtcgtgac ttaaaaacaa ggcatttgtc catgattgcc attggtggtt caatcgggac
     5581 gggattattt ttagcaagtg gtaatgcgat tcatacagca ggacctggtg gcgctttagt
     5641 tgcttatata gcaatcggga ttatggtgta ctttttaatg acaagtttag gcgaaatggc
     5701 tacttacatg cctgtatctg gttcatttag tacctatgct agtcgatttg ttgacccagc
     5761 tttcggtttt gcgcttggtt ggaattattg gtttaactgg gccattacac ttgcagttga
     5821 tatttccact gctgcaatta tcgttcaatt ttggctaccg aacacccccg cttggctatg
     5881 gagcgcgatt ttcttaattt tgattttcgg cttaaacgcg ctttcggtaa aagcatacgg
     5941 agaatcagag tattggtttt caattattaa agtggccacg gttattattt tccttatcgt
     6001 cggcgtgctt actattgtcg gaattcttgg cggcgaagtt attggctttt ctaactttac
     6061 tgctggcgat gctccgttta aaggtggatt ttttgccatc ttaggtacct tcttaattgc
     6121 tggattttct ttccaaggga ctgaaatggt tggtattgca gctggtgaaa gtgctactcc
     6181 agaaaccagc gtgccaaaag cgattaaaca agtattctgg cggattttgc tattttatat
     6241 ttttgcgatt ttcattattg ggatgattat tccttatact aacccgaatt tacttagtgc
     6301 cgaggcaaca gatgtggcaa ttagcccatt tacactcgta tttgaaaaag ctggtcttgc
     6361 atttgcggct tccgtgatga atgcggttat cctgacttct gttttatctg ctggtaattc
     6421 aggtctttat gcttccacaa gaatgctttg ggcaatggct cgtgataaaa aagcacctaa
     6481 attcttgggt aaagtaaacc gtcgtggtat tccgatggca gctttaattg ttacgacgat
     6541 tgttggtgca atgacattca ttacaacgct aacagaaaac ggcacagtga tttatacgtg
     6601 gttactttcc gcctctggtt taaccggatt tattgcttgg gtcggcatcg ctatcagtca
     6661 ttaccgtttc cgaaaagcat ttatcaaaca aggacatgac ttaagtgaac taaaatataa
     6721 agcaaaattt ttcccattcg gacctatttt agcactaatt ttatgtattt tagttattgt
     6781 cggtcaagat tacgcggcat ttttgaaacc agaatttacg aatcctgctt ggtggcaaaa
     6841 aatcggtatt tcttatatcg gcctccctat tttccttgtt ttctggctat cttttaaatt
     6901 tacaaataaa acaaaagtta ttccactgga agactgcaaa tttgatcaaa aataaaaaaa
     6961 catctcttgt tcattcattt ttacttgaat gatacaggag atgtttttat ttactctttt
     7021 tcagtaaggt ttcgactttt ttatttaggc gaattaattc ttctatttcg ttttcggtca
     7081 ggttttcgaa tactttcatc atggctttat acataaaagc gtttgcagtg gagcgtttcg
     7141 ataagtcttc tccttttttc gaaagcttga gtgttaaatc catgctgtca tttggaattg
     7201 ttttgtttaa tttcactact aagccaaggc tgattaaccc gtcaacatta gctgcagccg
     7261 aacttccagt aataattaat cgtttcgtta aatccgccac tgaaatacca ggtgtgctgt
     7321 aaatcacatt aatcatggca agttgctgaa tcgttaatcc taaactcgcc gcattttgat
     7381 cggcatatcc cgctgaaatt cgctggattg accaataagt ttttaatagt tcactaatat
     7441 tttctgtatc tgtattaatt cctaccatca tccaacctcc t
//
LOCUS       DASDXX010000132         7364 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.132, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000132 DASDXX010000000
VERSION     DASDXX010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7364
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.132"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            67..459
                     /locus_tag="U0280_002126"
     CDS             67..459
                     /locus_tag="U0280_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2272052.1"
                     /translation="MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGA
                     DIGINFHTVNKAYQILKQEGFIQIHRQKGVVIHPDGVAKADELFFAKLQTKLKPLIAE
                     SVVRGVTEEKWLEVSKAIFDEMHGRRVE"
     gene            462..1565
                     /locus_tag="U0280_002127"
     CDS             462..1565
                     /locus_tag="U0280_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEM2272053.1"
                     /translation="MEIIIYIFVSIAIISLQAITPFVIRKSECFGVNVGERANRNAEL
                     TRLKKQYVGQVVLWTSFVAIIGIALIQGFHSSENMQAGIFIASMFGQLIVSFIIYYRF
                     HHTTLQWKRDKIEAGEISTNSIIMVDTSFHRRKMVISYTWFVVPLLIFIITLAITVVF
                     YPVAPADFPIHFDMSGAVTDTVAKSPRVVLLLPMMQLGMIALFIFINFVIARSKQSVE
                     NENPTDSLKRGLLFRQISSKAMLIMCTIMVIDFLIMQVVTLLALPAEWMMITMIISVV
                     LILFGTVLLAVKVGQGGSRLKFADQPDGVNKPIRDDDSFWKAGVIYFNRNDPALFVEK
                     RFGIGWTINTARPVAWLSFIIIIAVIILISILF"
     gene            1648..2151
                     /locus_tag="U0280_002128"
     CDS             1648..2151
                     /locus_tag="U0280_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="effector binding domain-containing protein"
                     /protein_id="HEM2272054.1"
                     /translation="MAIRLKRLEEWEGFTGIALVREGLKTEALHTEIKTAFKEMLQLA
                     RELDDFSKQKTFYGISVHNIEDGITHYSVIPVEQKYPHLQEPLEWIEVPAHTYFVAEH
                     IQDTDISESYEEIARAIQEKNYKPYITANNPVFDPLPFKLEVYTKQGSDGANIEIRIP
                     VVKELHT"
     gene            2265..3077
                     /locus_tag="U0280_002129"
     CDS             2265..3077
                     /locus_tag="U0280_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM2272055.1"
                     /translation="MGYYSPQEVTEITIEKGTQKANSSTLTLVLLGFLGGAFISLGYL
                     LYIRAVGTMPHEWGSFATLIGASLFPVGLVCILLGGGELITGNMMAVAIAWYDKKISF
                     QQLLRNWAIVSVMNLVGAFFVAYFFGHFVGLTEGDFLPKTLATAGAKINDPFWVAFVS
                     GIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGY
                     YSWADFIWNIIPVYLGNVVGGAVFVSLFYFIAYKKNAPKKVKEEIHQPIEES"
     gene            3302..4768
                     /locus_tag="U0280_002130"
     CDS             3302..4768
                     /locus_tag="U0280_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEM2272056.1"
                     /translation="MSIKETALPKVQTKLFINGKWTDGDNKETKDIVNPANGEVIAKI
                     AQAGPNETKKAIKAAKEAFPDWAKMELADRVKLLHKIADLMEEKADTLAKIMTLEQGK
                     PLKESKGEVLTGAENFRFAAEEARRLYGETIPAPNNHAFIVKKQPIGVVAAITPWNFP
                     GGMVTRKLAPALATGNTIVLKPSGDTPLSALAIFEIFEEAGLPKGVANIVMGSSKEIG
                     ETLTDSDDVRKLTFTGSTKVGQTLFKQSAETLKKISLELGGHAPFIVFDDANLDAAVN
                     DLVAAKFRNNGQVCVSPNRIFVAKEIKEKFTKALVAKVKQLKVGNGLDDVNVGPLIRE
                     DAIDKIDKQLKNATDKGAKVLTGGGRLTGSDYDKGNFYKPTVLDNVTREMDIFYEETF
                     GPVIPLITFETEDEAIEMANDSEFGLASYFYTKDLARVEKVGAALEYGMVGANEIVIS
                     NPETPFGGVKHSGFGRENGHYGMEEYIQVKFINLKYRD"
     gene            4912..5217
                     /locus_tag="U0280_002131"
     CDS             4912..5217
                     /locus_tag="U0280_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2272057.1"
                     /translation="MKNILLICGSGASSGFMAAAIRKAAKKRGEQVTVKAASESQIDE
                     RINEIDYLLIGPHLAYMLDDLKQKVADKNVLVSIIPQATYGTLNGEKALDLILTMEG"
     gene            5222..6490
                     /locus_tag="U0280_002132"
     CDS             5222..6490
                     /locus_tag="U0280_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2272058.1"
                     /translation="MNNKVMDFMTNKFAPKVNKVVKNPWVSAIQDAIMSALPLVFVGS
                     LVTIVSLLKNLFPGMPDFSMISNFSFGMFGLVVAFLIPYYLMEKKGNSSQKLISGATG
                     LVLFLMLLFPTISADGDAVFILSRFGATGMFLSITTGLFVGCVMNFAAKRSFFSEDTP
                     IPDFVVGWFNSLLPITFILIVGWLITVQFNIDFFEVIVAVFSPLASIVQSYPGFVLSV
                     FIPAFLYTFGISGWVMMPAIYPVYMAGLAENSQAVANGASASNIATQETVYALISIGG
                     VGTTLSLSIMMLILSKSLQLKAIGKAVIVPSIFNINEPLFFGAPIAFNPYLMIPTWIN
                     AFLVPSIAYFVMSMNLVSIPAQSFLLWYMPYPVTSYLATQDFRGVIACLAIIVITWLV
                     YLPFFKAYDNSLLKQEKLDAIETEKEMVTN"
     gene            6505..6855
                     /locus_tag="U0280_002133"
     CDS             6505..6855
                     /locus_tag="U0280_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2272059.1"
                     /translation="MSEQDYVEETDSLNELSMNILIHAGNARNYLVKGLNHLEELAFN
                     EAEEFIASAKKEIVIAHSLQTDTLQLEASGNQIRYSTLFCHAQDTLMTAKSEILIGEH
                     MLRLFKKMTELTKK"
     gene            6867..>7364
                     /locus_tag="U0280_002134"
     CDS             6867..>7364
                     /locus_tag="U0280_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2272060.1"
                     /translation="MFENYQFPKDFLWGGAIAANQAEGAFKVDGKGISLADLHKYHKG
                     KTNDEISEEQHKGVSLADIKASMEDKVNYYPKRHGIDFYHTYPEDLALLAEMGFKTFR
                     TSLDWTRIFPTGEETEPNEAGLKYYDQLIDKIIELGMEPIITILHYETPVEIVLNHGG
                     WHNRKV"
BASE COUNT         2353 a         1308 c         1532 g         2171 t
ORIGIN      
        1 actgctattg acgcataagt atatgtgtta tacaatgtat ataacagtta aaggagaggt
       61 gtttctatgc tacttgcgat tgatcttcaa tcagacgagc cgatttatac acaaatatgc
      121 aatcaaataa ttgaaggtat ggcgaaacgg gaacttttac caggggacaa attaccttct
      181 gttcggagtc ttggcgcaga tattggtatt aattttcata cagtaaacaa ggcctaccaa
      241 attttaaaac aagaaggatt tattcaaata catcgtcaaa agggagtagt tattcatccg
      301 gatggcgtag ctaaggcaga tgagctattt tttgctaaat tacaaacgaa gctaaaacca
      361 ctcatcgcgg aatcggttgt gcgcggtgtt accgaagaga agtggctcga agtaagtaag
      421 gctatttttg acgaaatgca tggacggaga gtggagtaga aatggaaatc atcatttata
      481 tttttgttag tattgctatc atttcactgc aagcaataac cccttttgta ataagaaaat
      541 cagaatgttt cggagtaaat gtaggcgaac gcgctaaccg aaatgcggaa ttaacgcggc
      601 taaaaaaaca atatgtcggg caagtggttt tgtggacctc tttcgttgct attatcggaa
      661 tcgcattaat tcaaggcttt cattcgagtg agaacatgca agcgggtatt tttattgctt
      721 cgatgtttgg acaattaatc gtttctttta ttatttatta tcgctttcac cacacaactt
      781 tacagtggaa aagagataaa atagaggcgg gagaaatttc gactaattct atcatcatgg
      841 tagatactag ttttcatcgc agaaaaatgg ttatctcgta tacatggttt gtcgtgccac
      901 tgcttatctt cattattaca cttgcgatta cggtcgtttt ttatccagta gctcctgctg
      961 actttccaat ccattttgat atgagtgggg cagtgacgga tacggttgcc aaatcaccta
     1021 gagtcgtatt gctattaccg atgatgcagc taggaatgat tgcgttattt atctttatta
     1081 actttgttat tgctaggagc aaacagtccg tagagaacga aaaccctact gattcattaa
     1141 aaaggggact cctatttaga cagatttcta gtaaagcaat gttaattatg tgtacgatta
     1201 tggtaattga ttttctcatc atgcaagtag tcacattact agcacttcca gctgaatgga
     1261 tgatgataac aatgataatt tctgttgttt tgattctgtt tggaaccgtc cttcttgctg
     1321 taaaagtagg gcaaggcgga agcagactta aatttgctga ccaacctgat ggtgtcaata
     1381 agccaattcg ggatgatgat tctttttgga aagcaggggt tatttatttt aatcgaaatg
     1441 atccagcttt atttgtagaa aaacgctttg ggattggttg gacgattaac acagctcgcc
     1501 ctgttgcttg gttatctttt atcattatta tcgctgttat tattctcatt agcatcttgt
     1561 tttaacttgc tctcagacgg gtatttacca tatggtatac ggataaatta gcttgtgtga
     1621 gatgcttttg tgaaggagta gataatcatg gcgattagat taaagcgact ggaggaatgg
     1681 gaaggattca ctggtattgc gctcgttcga gaaggtctta aaacagaagc acttcataca
     1741 gaaataaaaa cagccttcaa agaaatgctt caacttgcgc gagaactaga tgatttttcc
     1801 aaacaaaaaa cgttttatgg tatttctgtc cataatatag aagacggaat tactcattat
     1861 tcggtaattc cagtggaaca aaaatatcct catttacaag aaccgcttga gtggattgaa
     1921 gttccggctc atacgtattt tgtggctgag catattcagg atacagacat aagtgaaagt
     1981 tatgaagaga ttgccagagc cattcaagaa aaaaattaca aaccatatat tacagcgaac
     2041 aaccccgttt ttgacccact accattcaaa ttggaagtgt atacgaaaca aggaagcgac
     2101 ggagcaaata ttgaaataag gattcctgtt gtaaaagaat tgcatacgta agaagaagcc
     2161 tgggactttt gttctgggct tttttatact agcaagctgt ttttgagtgt gctataataa
     2221 aaacgctatt ttgtgattat tttaacaaga aggaagggat tcatgtggga tattatagcc
     2281 cgcaggaagt aacagagatt acgattgaaa aagggaccca aaaagcaaat tcaagtacgt
     2341 taacgcttgt gttgttaggc tttttaggtg gggcctttat atctcttggt tacttattat
     2401 acatacgtgc agtaggaaca atgcctcacg aatggggaag ctttgcaacg cttatcggcg
     2461 ccagtctttt tccggttggc ctcgtttgta ttttgctagg tggaggagaa ttaattaccg
     2521 gcaacatgat ggctgtcgcg attgcttggt acgacaaaaa gatttccttc caacaattac
     2581 ttagaaactg ggcgattgtg tctgtcatga acttagtggg cgcatttttt gtcgcttact
     2641 tcttcggaca tttcgttggc ttaacagaag gcgatttctt accaaaaacg ctagctacag
     2701 ctggcgcaaa aattaacgat cctttctggg ttgcttttgt ttccggaatt ggttgtaact
     2761 ggtttgttgg gattgcggtt tggctttgct acgcggctaa agatttcgca ggaaaaatcc
     2821 ttggtatttg gttcccggtt atggcatttg ttgctatcgg atttcagcac gttgtcgcca
     2881 acatgtttat tatcccagct gcgattttcg ctggttacta ttcatgggcg gatttcattt
     2941 ggaacatcat cccagtttac ttaggaaatg tagtcggtgg agcagttttt gttagcttat
     3001 tctacttcat tgcttataag aaaaacgcac ctaaaaaagt aaaagaagaa atacaccaac
     3061 caattgaaga aagttaagac cgaaaaagct agttacattc gatgtagcta gctttttttg
     3121 aaaaaaatta aagtttttta gagactgttc tcgttcccgc catgttggga tagaatgact
     3181 ttttccaaaa accattttgc cacttgaaaa agaaaatcct gattaaattt ttcgatttgt
     3241 ggaaaacact attataagca acgagagcac gtgcagaaaa attttttgag gagtggtatt
     3301 tttgagtatt aaagaaacag ccttaccaaa agttcaaaca aaattattta ttaatggaaa
     3361 atggacggat ggagataata aagaaacaaa agatattgta aacccagcaa atggagaagt
     3421 tattgccaaa atcgctcaag ctggaccaaa cgaaaccaaa aaagccatta aagctgcaaa
     3481 agaagcattt cctgattggg caaaaatgga actagctgat cgcgtcaaat tattacacaa
     3541 aattgccgat ttaatggaag aaaaagcaga tacactagca aaaattatga cgcttgaaca
     3601 aggtaaaccg ctaaaagaat caaaaggaga agtcctaact ggcgcagaaa acttccgatt
     3661 cgctgcagaa gaagcaagaa gattatatgg ggaaactatc ccagcgccaa acaatcacgc
     3721 gtttatcgtc aaaaaacaac caattggtgt agttgcggcc attactccgt ggaatttccc
     3781 aggtggtatg gtgacacgaa aacttgctcc agcgcttgca accggaaata caatcgtatt
     3841 aaaaccttcc ggagatacgc cgctttcagc cctagctatc tttgaaattt ttgaagaagc
     3901 cggcttgcca aaaggtgttg ccaatatcgt tatgggtagc tccaaagaaa tcggcgaaac
     3961 attaactgac agtgatgatg ttcgtaaact aactttcacc ggctccacga aagtcggtca
     4021 aacactattc aaacaatcag ccgaaacact gaaaaaaatc tcgctcgaac ttggtggaca
     4081 tgcgccattt atcgtatttg atgatgcaaa cctggatgct gctgtaaatg atttagttgc
     4141 cgcaaaattc cgcaataacg gtcaagtatg tgtatcgcca aaccgaattt ttgttgccaa
     4201 agaaattaaa gaaaaattca ctaaggcgct agttgctaaa gtaaaacaac taaaagtagg
     4261 taacggttta gatgatgtga atgttggtcc acttatccgt gaagatgcga ttgacaaaat
     4321 cgacaaacaa cttaaaaatg ccacagataa aggtgccaaa gtcctaactg gcggcggtcg
     4381 tttaacaggt tccgactatg acaaaggcaa cttctacaaa ccaactgtct tagataacgt
     4441 tactcgtgaa atggacattt tttatgagga aacatttggt ccagtaatcc cgcttatcac
     4501 atttgaaacg gaagacgaag caatcgaaat ggcgaatgac agtgaattcg gtcttgcttc
     4561 ttacttctac actaaagatt tagcacgcgt agaaaaagtg ggagcagcac tagaatacgg
     4621 aatggtcgga gcaaatgaaa ttgtcatctc taatccggaa actccatttg gcggcgttaa
     4681 acattctggt ttcggtcgcg aaaatggcca ctacggaatg gaagaataca tccaagtgaa
     4741 attcattaac ttaaaatatc gtgactaaca caagctatta agaaactcct ttgcttcaag
     4801 caaaggggtt tcttttttat gcagtttcct accagtagga aaaaaacata tttgtaagcg
     4861 gattcagctg tttatataat aaaagtaagt taaggaaagg gaggatacaa aatgaaaaac
     4921 attttactca tttgtgggtc aggagcttca agtggattca tggcagcagc aatcagaaaa
     4981 gcagcaaaaa aacgtggaga acaagtgacg gtgaaagcag ccagtgagtc acaaatagat
     5041 gaaagaatta atgaaattga ttacttatta atcgggccgc acttagctta tatgctggat
     5101 gacttaaaac aaaaagtagc cgataaaaat gttttagtat caattattcc gcaagcaact
     5161 tatggcacac ttaacggtga aaaagcactc gatctcattt taactatgga gggataacac
     5221 gatgaacaac aaagtgatgg attttatgac aaataaattt gctcccaaag taaataaagt
     5281 tgttaaaaat ccttgggtat cagcaattca agatgcaatt atgtctgcgc ttccgctcgt
     5341 ttttgtcggt tctttagtca ccatcgtttc actacttaaa aatttatttc cgggcatgcc
     5401 tgatttttcg atgataagta atttttcgtt tggcatgttt gggttagtcg tggccttttt
     5461 aatcccatat tatctgatgg agaaaaaagg aaatagcagc caaaaattaa tttctggcgc
     5521 aactggactt gttctatttt taatgctact atttccaact atttcagcag acggggatgc
     5581 cgttttcatt ttatctagat ttggagcgac agggatgttc ttatccatta caaccggatt
     5641 atttgttggt tgtgtgatga actttgctgc gaaacgatca tttttcagtg aagatacacc
     5701 gattccggat tttgtcgttg gttggttcaa tagcttgcta ccaattacat ttattctgat
     5761 tgttggttgg ttaataactg ttcaatttaa tattgatttc tttgaagtga ttgtggcagt
     5821 gtttagtcca ctcgcgtcaa tcgtacaatc ttatccaggc tttgtgcttt cggttttcat
     5881 tccagcattt ctttatacat tcgggatttc tgggtgggtt atgatgcccg cgatttaccc
     5941 ggtttatatg gcaggactcg cagaaaactc acaagctgta gcaaatggcg caagtgcatc
     6001 gaacatcgca acacaagaaa ctgtatacgc attaatttca atcggcgggg tcggcacaac
     6061 cttatcacta tccattatga tgctcatttt aagtaagtct ttacagctaa aagcaatcgg
     6121 aaaagcagtt attgtcccat cgatttttaa tatcaacgaa ccattatttt tcggggcacc
     6181 aattgccttc aacccatact taatgattcc aacgtggatt aatgctttct tggttccaag
     6241 catcgcctat ttcgttatgt cgatgaactt agtaagtatt cccgcgcaat cgttcttgct
     6301 atggtacatg ccttatcctg taacgtctta ccttgcaaca caagatttcc gaggtgtgat
     6361 tgcttgttta gcaattatcg tcatcacatg gcttgtctac ttgccgttct ttaaagcata
     6421 cgacaactcc ttactcaaac aagaaaaatt agatgcaatc gaaacagaga aagaaatggt
     6481 aacaaattga ttggaggaac taaaatgtca gagcaagact atgttgaaga aacagatagc
     6541 ttaaatgaac tatccatgaa tatattaatc catgctggaa acgcaagaaa ttacctagtg
     6601 aaaggtctta accatttaga ggaactagcg tttaacgaag ccgaggaatt tatcgcctct
     6661 gccaaaaaag aaattgtcat cgcgcatagt ctgcaaacag atacacttca attagaagca
     6721 tcaggcaatc aaatccgtta ttccacgctg ttctgtcatg cgcaagatac actcatgaca
     6781 gccaaaagtg aaatattaat cggcgagcat atgctacgtt tattcaaaaa aatgaccgaa
     6841 cttacgaaaa aataggaggt acgagcatgt ttgaaaatta tcaatttcca aaagactttt
     6901 tatggggagg agctatcgca gccaaccaag cagaaggcgc atttaaagta gatggaaaag
     6961 gaattagttt agcagatttg cacaaatatc ataaagggaa aacaaatgat gaaatcagtg
     7021 aggaacaaca taaaggtgta agtttggctg atatcaaagc aagtatggaa gacaaagtga
     7081 actattatcc gaaacgccac ggtatcgact tttatcacac gtatccagaa gatttggctt
     7141 tgcttgctga aatgggcttt aaaacatttc gaacttcgct ggactggaca cggatttttc
     7201 caactggcga agaaacagaa ccaaatgaag cgggattaaa atattatgac caattaattg
     7261 ataaaattat cgaacttggc atggagccaa ttattacgat attacattac gaaacgccgg
     7321 tggaaattgt cttaaatcat ggcggttggc ataatcgtaa agtt
//
LOCUS       DASDXX010000133         7312 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.133, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000133 DASDXX010000000
VERSION     DASDXX010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7312
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.133"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            1..1840
                     /locus_tag="U0280_002135"
                     /pseudo
     CDS             1..1840
                     /locus_tag="U0280_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929206.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="MucBP domain-containing protein"
     gene            1963..3321
                     /locus_tag="U0280_002136"
     CDS             1963..3321
                     /locus_tag="U0280_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HEM2272061.1"
                     /translation="MKKMLPESKVEAIRKEGFLNRAVEAYRFFYPTVSNVSNFKALND
                     LGITENHDFIIQLTTPDLNVLTQNSDTPYCLGTGNTENGPVVIELPQGAIVGVADDIN
                     FKFITNMGLTGDEQGKGAKYLYLPPNYDGDIPEGYIVRKPSSYRFLICLRAMVHQASD
                     YEKAFELLKKVKFYPLEEKDNNPTSTFHDFSHRKAISTPYYVEGKFDYWEVIKWALDN
                     DETDPEYYQMYGLLKAIGLAPNKEFNPDPDKKALLIEAAEKADKMMFVNSFNTDDPAA
                     IVWPGKNWEWAVYGENNDFYEKTYLNLPVRERWFYQATLETHMMFMHKVGFGSVYMLG
                     VKDKEGNYLDGGKSYTLKVPTPVPTSIFWSVTVYEMDTRSEIVTEQFMPALNSIKDTF
                     EVDADGNTTLYFGPNPPEDESLPWIQTVPDANWFTYFRIYGPTKPAFDSSWQLDDFEE
                     VK"
     gene            complement(3364..3957)
                     /locus_tag="U0280_002137"
     CDS             complement(3364..3957)
                     /locus_tag="U0280_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI family protein"
                     /protein_id="HEM2272062.1"
                     /translation="MAKTELNPKVDAFLSKPSTWQAEFKALREIAITFELEEEFKWGK
                     PCYAINGSNVFLIHGFKNYCALLFMKGALLRDPENILVQQTENVQAARQIRFTNLQEI
                     LDQKEFLKAYIQNAIEVEKAGLEVELKPREETPIPEELLAKFEEMPALQTAFEALTPG
                     RQKAYLLYFAAPKQSKTRVSRIEKYEATILDGLGLND"
     gene            complement(4094..4501)
                     /locus_tag="U0280_002138"
     CDS             complement(4094..4501)
                     /locus_tag="U0280_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM2272063.1"
                     /translation="MTLNVYLNFRTQSRDAIAFYEEIFGTKCTDLMTYGEIESREEPI
                     EDSLKDLVMNASLVMDGVKVMFSDVPKSMPLTFGDNITLVIDTSDEIKLTKQFHQLAE
                     GGNIVMPLGKTFWSEKYGQVTDKFGVGWQLNLS"
     gene            4666..5265
                     /locus_tag="U0280_002139"
     CDS             4666..5265
                     /locus_tag="U0280_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2272064.1"
                     /translation="MKKTLYLIRHGQTLFNQRKKIQGFCDAPLTELGIKQAKIAASYF
                     KENNITFDQAYSSTSERASDTLELITDKSYQRLKGLKEWNFGTFEGESEDLNPPLPYG
                     DFFAAYGGEREVDFRDRLVATMERIMSQDNHDTVLAVSHGAACAQFARYWEKTSKIGK
                     VTGLKNCCILKFEYENGRFTLVNFINHDFENGTHIESTK"
     gene            complement(5297..5557)
                     /locus_tag="U0280_002140"
     CDS             complement(5297..5557)
                     /locus_tag="U0280_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272065.1"
                     /translation="MNLDDLKNKVTESLPLENLGTLTEEATNKASELGEQASNVTENL
                     QNEATNLTENLQDKTSGLTENLQDTANELTGGFLDKIKNLFQ"
     gene            5681..7093
                     /gene="dbpA"
                     /locus_tag="U0280_002141"
     CDS             5681..7093
                     /gene="dbpA"
                     /locus_tag="U0280_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HEM2272066.1"
                     /translation="MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQ
                     TGSGKTAAFAIPIAEQIEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIY
                     GQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFID
                     QVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTD
                     NKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLDVKVSKIHGGLRQEDRFRAMDDF
                     KSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFV
                     KTNENPLLRDIEEMLDVTIEKKRKPTVIEVKANEEAFRKKQQKRPTIKKARGEKLNKN
                     IMKLYFNGGKKKKIRAVDFVGTISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLE
                     MMRSRKVKGRRLKVNEARKR"
     gene            7118..>7312
                     /locus_tag="U0280_002142"
     CDS             7118..>7312
                     /locus_tag="U0280_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 family protein"
                     /protein_id="HEM2272067.1"
                     /translation="MERPDNQLILMVLEVVKNPLYNIKSLTINFLQGDIVGNSTRNEL
                     LYCTYWLEFHGFILRDEKGDN"
BASE COUNT         2580 a         1235 c         1410 g         2087 t
ORIGIN      
        1 ttttaccaag taaccttaaa acaaagatgc caaaactatc gagaattagt gcattaaatc
       61 aaacagttac tttagataaa gcaattgtag tggatgattc cgatttaatt attaataatg
      121 agattagtaa ttttggaaag ttaaccgatc caagcccaat atcaaatttt ggaacttacg
      181 caaatgaaaa aataacttgg tcgtctgaaa gaattaaaaa tttaacagag gttagtttta
      241 agttttctga gctaattaat gtgactggta tagatggaac tttttcagga aaagtaacac
      301 aaccatttaa aaaatcaact acaccagtaa ttaatgcaga ttccgaaatt cattatccgc
      361 aagggacaaa aaaacagaag cagagttttt aaaggatatt caagcgcaaa caacggatga
      421 tttatccatt aaaagcgatt ttgaaataat ggtgaatctc aagaaagtag gaaaatacac
      481 agtaatatta aacgtagaga atatggatgg aattaaagct aatccaaaag aagtgactgt
      541 ttatattgat gctgtacaag gtgcaaatat aactgtgaaa tatgaagaca aatcagggaa
      601 taaacttgca gaaaatagca tattaactgg aaatgtcggt gaagaatata gttcaagtga
      661 aaaagaaatt ttaggttata cactaactga aattccaaca aatgcacaag gagaatttag
      721 tttagaagaa cagactgtga catatatcta ttcgaaaaat cccgttccag ctaaagacat
      781 cacggtacaa tataccgata aagatggaat agaactagca ccaaccgaaa cattatcagg
      841 taatgttgat gaaaattatg ttacaacagc gaagaatttt acaggatacg aattaattga
      901 aactccgagc aatgcagaag gaaagtttag cgaaaatgca caaacagtga cctatgtgta
      961 tcgcgcgatt aaagcagatc caattttagc aaaagaagtt acggtgaact accaggacga
     1021 attaggagct aaaattagtg aaacggaagt attaactggt gaaattggtg aaacatacac
     1081 aacagtggct aaaacaatag atggctatac cttaattaag agccctatta acgctagcgg
     1141 gatttttaac gaaaatcctc aaacggttac ctatgtgtat caattacaaa acaacccaat
     1201 aacagcaaat atcactgtta aacacttgga tgaaaacaac aatgagctag caccgagtga
     1261 ggtactaagt ggaattgtcg atgaagcata tacaactaat ccaaaagaaa taaaagacta
     1321 ttcgctagta aaagtaccaa ctaatgctag cggaaaattc acgacagaag cacaaacggt
     1381 gatttatcac tataaaaaaa acagtataca gacatcatct tatattactg taaaatatgt
     1441 agatgaaaca gggaaagagc tggccataag cgaggtatta aacggaaaca ttaatgattc
     1501 ctacgcaact acagctaagg aaattaaagg ctacacgcta gtggaaaagc ccgctaatgc
     1561 aactggtaaa tttacagatc aggatcaaac tataaaatat gtatatcgtg ctaatacaga
     1621 tgaagtaaat ctagacccag atgtaccagc gagaaatccc aatggagata ttcaaccaat
     1681 gaatggtgcc caaccaccaa ttgaggttcc aaaatccctg cctaaaacag gtagccagcc
     1741 ggcaaatttg atctttggat taggagtttt actagtgttt cttagtaccc aatggctaca
     1801 tcgagataaa agaaaaaaag ataaatctca taactgctga taacatttct tgacaaaact
     1861 ctccttatcc taaggagagt tttttacttt acgcttgaac attcaaaaac aagggtatta
     1921 gttaagtgtt ctaaaaaaag ctaattgaag gaggtttttt acatgaaaaa aatgctacct
     1981 gagagtaaag tagaggcaat tagaaaagaa ggatttttaa atcgagctgt tgaggcatat
     2041 cgatttttct atccaactgt gtccaatgtg tctaatttta aagcattgaa tgacttaggg
     2101 attacagaaa atcacgattt cattattcaa ctcacaacgc ctgatttaaa tgtattgacg
     2161 caaaactcag atacaccata ttgccttgga acgggaaaca ccgagaatgg tccagttgtt
     2221 atcgagttgc cacaaggcgc tatcgttggt gtggctgacg atattaattt taaatttatt
     2281 acgaatatgg gattaacagg ggacgagcaa gggaaaggcg cgaaatattt gtacttacca
     2341 cctaattatg atggggatat cccagaaggc tacatagtac gcaaaccttc aagctatcgt
     2401 ttcctcattt gtttacgagc gatggttcac caagcaagtg attatgaaaa agcatttgaa
     2461 ctcctgaaaa aagtgaaatt ctatccatta gaagaaaaag ataataatcc aaccagtaca
     2521 ttccatgatt tttcgcatcg aaaagcgatt tcgacaccat attatgtcga aggaaaattt
     2581 gactattggg aagtaattaa atgggcgctg gataatgatg aaacagatcc agaatattac
     2641 caaatgtatg gcttactaaa agcaattggt ttagctccaa ataaagaatt taatcctgat
     2701 ccagataaaa aagctttatt aatagaagct gccgagaaag cagacaaaat gatgtttgtg
     2761 aattccttta atacagatga tccagctgct attgtttggc caggaaagaa ctgggaatgg
     2821 gctgtctatg gtgagaataa tgacttctat gaaaaaacgt atttaaatct tccggtaaga
     2881 gagcgttggt tctatcaagc gacactcgaa acacatatga tgtttatgca taaagtcgga
     2941 tttggttccg tttatatgct tggagtgaaa gataaagaag gaaactatct ggatgggggc
     3001 aaaagttata cattaaaagt gccaacacca gtgccaacga gcattttctg gtcggtaacg
     3061 gtttatgaga tggatactcg ttcggaaatt gtcacagagc aatttatgcc tgcgcttaac
     3121 tccatcaaag atacgtttga agtagatgct gacggtaata caacacttta ctttgggcca
     3181 aatcctccag aagatgagtc gcttccatgg attcaaactg ttccagatgc caattggttc
     3241 acgtatttcc gtatttacgg accaaccaaa ccagcctttg atagcagttg gcaattagat
     3301 gattttgaag aagtaaaata aataaaaaag cgcaaccttc acgcagggtg cgcttttttt
     3361 cgattaatcg tttaatccta atccatctaa aatcgttgct tcgtattttt caatgcgcga
     3421 aacacgcgtt tttgattgct ttggagccgc aaaatagagc aagtaagctt tttgacgacc
     3481 aggagttaag gcttcaaaag ctgtttgtag cgcaggcatt tcttcaaatt tagcgagtaa
     3541 ttcttctgga ataggcgttt cttcccttgg tttaagttcc acttctaacc cagctttttc
     3601 tacttcaatt gcattttgaa tatacgcctt tagaaattct ttttgatcaa gaatttcctg
     3661 taaatttgtg aagcggattt gtctggcagc ttgcacattt tctgtttgct gaactaaaat
     3721 gttttccgga tcacggagta gtgcgccttt cataaagagt agtgcacagt agtttttaaa
     3781 accatgaatt aagaaaacgt tgctgccatt aatagcgtaa caaggtttcc cccatttgaa
     3841 ttcttcttct agttcaaacg tgattgctat ttctcttaat gctttgaatt cagcttgcca
     3901 agtggatggt ttacttagaa acgcatctac tttaggattt aattcggttt ttgccataaa
     3961 gaattcctct tttccacact ttttctttga tacgtgttat tttaacttaa taagaaaggc
     4021 cttgcaaatt tggtcggcct actaaaaatg gacttaaaga aagaacctga gttttatccc
     4081 agattctctt aatttaagat aaattaagct gccaaccgac gccgaattta tccgtcactt
     4141 gcccatattt ttccgaccag aatgttttgc caagtggcat gacaatattg ccaccttctg
     4201 caagctgatg gaattgtttg gttaatttta tttcgtcaga tgtatcaatt actagtgtta
     4261 tattgtctcc gaatgtgagc ggcatagact ttggaacatc tgaaaacata acctttactc
     4321 cgtccattac taaactagca ttcatcacta aatctttgag cgaatcttct ataggttctt
     4381 ctctggactc gatttcccca tatgtcatca aatctgtaca ctttgttcca aaaatttctt
     4441 cataaaacgc gatagcatct ctggattgtg ttctaaaatt caagtaaaca ttcaacgtca
     4501 tttgaattcc tcctcgattt ttattcgcta aagttctatt cattttggtg tttttattat
     4561 agcagatact gcgtgaaaga ggaaaaatta agaagataaa tacttgactt ggagctactc
     4621 cagggtgata aactaaggag aagatataga ttcggaggaa tttagatgaa aaagacattg
     4681 tatttaatac gccatggtca aacattattt aatcaacgta aaaaaattca aggtttttgc
     4741 gatgcaccac ttaccgaact cgggattaaa caagcaaaaa tcgctgctag ttactttaaa
     4801 gaaaacaata taacattcga tcaagcttac agttccacat cagagcgcgc atctgacacg
     4861 ttagagctga ttacggacaa aagctatcaa cggttgaaag gtttgaaaga atggaatttt
     4921 ggtacttttg aaggcgagag cgaagaccta aatccaccgc taccatatgg agattttttt
     4981 gctgcgtatg ggggagagcg agaagtggat ttcagagatc gtttagtagc aacaatggaa
     5041 cgtatcatga gccaagataa tcatgatact gtccttgccg tttctcacgg agctgcctgt
     5101 gcccaatttg ctagatattg ggaaaaaaca agcaaaattg gcaaagtaac aggactgaag
     5161 aattgctgca ttttaaagtt tgaatatgaa aatggcagat ttactttagt taattttatt
     5221 aatcatgatt ttgagaatgg aacgcatata gaaagcacta aataaaaaag cactcgtcat
     5281 tgagtgcttt ttcgcttcat tgaaacaaat tctttatttt atccaaaaat ccaccagtta
     5341 actcattcgc agtatcttgc aagttttccg taagtccact tgttttatct tgtagatttt
     5401 ctgttaggtt cgtcgcttca ttctgtaaat tttctgtgac attacttgct tgttcaccaa
     5461 gctcagatgc tttgtttgtt gcctcttctg tcagtgttcc taggttttcc aggggcaggg
     5521 actcggtaac tttattcttc aaatcatcta aattcatctt ttcctcctta ttttgggggc
     5581 ttagagttca ttctaaagga aggagggata aagtacaaac aattcgttcc atcatttgtg
     5641 aaaaaatatg gtatgatgat atgaggaaat gaggactgac atgaataatt taaaattaag
     5701 tgaagaaatt aaaagagcga ttaatgaact aggatataca gaagcaacac ccgttcaaaa
     5761 agcggtaatt ccagttgcct taacaggaga agatattgtt gctaaatcac aaactggtag
     5821 tgggaaaaca gcagcattcg ctattcccat tgcagaacag attgaatggg aagaaaataa
     5881 gccacaagca ctaatcatcg ttccaacacg agaacttgca atgcaagtca agacagaatg
     5941 tacgaatatt ggacgattta aacgtgtcaa agctgcagca atatacggac aatcaccatt
     6001 tgcgaaacaa aaattagaac taagccaaaa aaatcatatc gtcgttggga cgcctggtcg
     6061 cctgctggat catattgaaa aaggatcact gaatgtcgac aaggttgccc atttagtttt
     6121 agatgaagta gatgaaatgt taagcatggg atttattgat caagtcgaag atattcttag
     6181 ccgtttacca aaacagcgcc aaaatctatt tttctcagca actatgccag aagaaatgca
     6241 agatttgatt aaacgctacc aagatgatcc aatggtaatc gaaatggcat cggaaaaaac
     6301 aaaccctatc ttccacgtgg agatgcaaac agataataaa gaaaaaacgc taaaagatgt
     6361 tttgattaca gaaaatccgg atagcgcaat aatattttgc aatacgaaaa atcaagtcga
     6421 tgaactcacc gatttacttg atgtaaaagt tagtaaaatt catgggggtt taagacaaga
     6481 agaccgtttc cgagcaatgg atgattttaa aagtggcaaa tcccgtttct taattgcgac
     6541 agatgtggca gggcgcggaa tagatgtgga taatgtatcg ttagtcatta actacgattt
     6601 accaattgaa aaagaaaatt atgtacatcg tatcggtcgt actggtcgcg ctggcaaaag
     6661 tggtaaagct attagtttcg tgaaaacaaa tgaaaatcca cttttgcgtg acatagaaga
     6721 aatgctcgat gttacaatcg aaaaaaaacg taaaccgaca gtgatagaag tgaaagctaa
     6781 cgaagaagct ttccgcaaaa aacaacaaaa gcgcccaaca atcaaaaaag ctcgtgggga
     6841 aaaattaaat aaaaacatta tgaaactgta ttttaatggt ggaaaaaaga aaaaaattcg
     6901 tgcagtagat tttgttggaa ctatttctaa attagaagga attacggccg aagatatcgg
     6961 aattattacg attgaagacc atgtttcttt tgttgaaatt ttaaatggaa aaggtccggc
     7021 agtactggaa atgatgcgct ctcgtaaagt aaaaggtaga cgcctgaaag taaacgaggc
     7081 cagaaaacga taaattaaag aaaagaaggt ccaaacaatg gaaaggccag ataatcaact
     7141 tattttaatg gtgttagaag ttgttaaaaa tccactttac aatataaaat cactaacaat
     7201 taattttctg caaggtgaca tcgttgggaa ttcaacaaga aatgagttgt tatactgcac
     7261 ttactggctt gaatttcatg gctttattct tcgtgacgaa aaaggggata ac
//
LOCUS       DASDXX010000134         7285 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.134, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000134 DASDXX010000000
VERSION     DASDXX010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7285
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.134"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            148..498
                     /locus_tag="U0280_002143"
     CDS             148..498
                     /locus_tag="U0280_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272068.1"
                     /translation="MKKKKWLQLIMAVIVLCAIIFGIKWLLYRDNLVEMMQVDDTLYI
                     VSYEPAKQEDALEKIGEIEHRIRHYRIPNKNFTSNYLSEGTELYKAKNGDEFPRTILF
                     KEDGEYFIASEAMK"
     gene            complement(700..1167)
                     /locus_tag="U0280_002144"
     CDS             complement(700..1167)
                     /locus_tag="U0280_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobD family protein"
                     /protein_id="HEM2272069.1"
                     /translation="MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSR
                     GRWDGYIFVGIIVLLFVSNTFFREGPFSTSVLLGIMGVLFIYICFFRSSKAVFKESGL
                     FYALLFFPYAKIERMNLSEDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS"
     gene            complement(1349..2227)
                     /locus_tag="U0280_002145"
     CDS             complement(1349..2227)
                     /locus_tag="U0280_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HEM2272070.1"
                     /translation="MSEQITVNEKKITKSDLMGVFIRSNLFQGSWNFERMQSLGFCFS
                     VIPVIKRLYPEKGPEREQAIKRHLEFFNTHPYMAAPILGVTTAMEEQKANGADIDDGA
                     INGIKVGLMGPLAGVGDPIFWGTVRPVLAALGAGFATDGSIIGPILFFVLFNAIRLGF
                     RYWGVFYGYTKGTDVVSDMSGGLLQKLTEGASILGLFVMGALVNKWTTIYVPLVAYTT
                     EDSKTGKDVPTTVQSILDQLMPGLLALLLTFACMWILKKKVNALWLILGLFVVGILGY
                     WSGILGLPPAGYSPLG"
     gene            complement(2245..3060)
                     /locus_tag="U0280_002146"
     CDS             complement(2245..3060)
                     /locus_tag="U0280_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM2272071.1"
                     /translation="MSAIQLILVFLVSCISGMGSILDEWQTHRPLIACTLIGLVLGDI
                     TTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVITGGQDISVGISLAIPLAA
                     LGQVLTILVRTITVAFQHMADKAGKEGNLRSLDWIHVTALLLQAMRIAIPAVIVAVTV
                     GTQAVENLLNAIPDVIVNGLNVAGGFIVVVGYAMVINMMSAKYLMPFFFLGFVVAAFT
                     AFNLVALGVLGLVAAIIYIQLNPKYQLKEAIQQYGGGGGGRSADDDLDDDLDD"
     gene            complement(3235..3723)
                     /gene="manX"
                     /locus_tag="U0280_002147"
     CDS             complement(3235..3723)
                     /gene="manX"
                     /locus_tag="U0280_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003229832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM2272072.1"
                     /translation="MMEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVR
                     KTLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITT
                     VNIGGMAFREGKHMITNAVSVDETDEAAFRKLDEKGIELEIRKVASDNKVKLIPLLDK
                     DK"
     gene            complement(3720..4154)
                     /locus_tag="U0280_002148"
     CDS             complement(3720..4154)
                     /locus_tag="U0280_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HEM2272073.1"
                     /translation="MPVGIIIGTHGEAARELLKSTEMIIGKQDNVEFITFVPGENTDT
                     LITKYKEKLDKLDTSEGVIFMVDLFGGSPYNASSQIALPEDNMDVVTGVNIPMLLETL
                     SMRAASNQKDLVETALTAGSGGVKSLKQSLPKIETEVGEDDL"
     gene            complement(4442..7258)
                     /locus_tag="U0280_002149"
     CDS             complement(4442..7258)
                     /locus_tag="U0280_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HEM2272074.1"
                     /translation="MKRIDRIYEFILENPSTKTIREQLEKNEGFTASTISETLSILRN
                     NVSMELNELHRQGKIIKIVGRPVLYFPKKAVEDEIGRTLSDNELEFDSCEPLLKMLKP
                     SIVERSPFDDLIGVNDSLKTPVEQAKAAVLYPPNGLHTMILGQTGVGKTLFANLMYRF
                     SQHAKRLPADAPFIIFNCADYYNNPQLLMSHIFGHVKGAFTGADNDKGGLVEKAEGGI
                     LFLDEIHRLPPEGQEMIFYLMDSGTYNKLGETDRTRKSNVLIIGATTENPESSLLKTF
                     MRRIPIIITLPSLEERTAFERVELLKYLLSSEAHRVNKPIRIEDEAAKALIGNTTYGN
                     IGQLKSNIQLVCAQGFLNSFDKDEEILIDFKTLPINIKDGFFHFSNRRKELQAIAEYL
                     EPYTTIFPELNNTLITSDEYEPNFNLYKIIEDKASILMDQGVEDDDIKKFIKMDIDIH
                     LNSFYNKFKNTIHNRENILKIVNEEILNFAEGVELRIEHQLGKKLNERFLLAFSLHLT
                     SFIKRIESNKPLKYTNIENVVNDQPEAYELSREIKDDIEATFHIRVPNMEVMYLTLLI
                     SSLLKEQENARVAVLVATHGNNTASSMVSVAKKLLGEGLVEGIDMPLDQSPKIVLDKL
                     TERAKEMDMGRGLLLLVDMGSLTSFAPVISERTGIPVRSIDMVSTATVIEAVRKSNIL
                     DMELDSIYDSLKDFRGYGGYNSDDDTLDSNQKPHAIITICATGEGTAEKLQLFIENIL
                     DTITTDAIKVIPIGLHEMDTKLEQLQEENDILMAVGIQDPKIQIPFIPLERLFGIDGE
                     EQLVSLVKQRNIIVKKGETGRIAKEIIEESLNEFLTYLNPKKTIEILSSFASVLEKKL
                     GYKLDNTFKINLLIHVGCALERMVLNDGLIYREPKDMLETNIFKALEQTNKEVIYKMN
                     LKLTNDELCYLYDILNEIQPEVLS"
BASE COUNT         2260 a         1444 c         1350 g         2231 t
ORIGIN      
        1 tcatgacaag aatcagacat ttcattacat ttttggttat acattggctt tttatgatac
       61 actcatcgtg caacaaaata taccaacatt gtgacggaat ggtttattaa aagcggtaat
      121 aaataaaatg aaaagtgaga taatagaatg aagaagaaaa aatggttgca attaataatg
      181 gcagtaatag ttctttgtgc aataatattc gggataaaat ggttattata tagagacaat
      241 cttgtagaaa tgatgcaagt tgacgacact ttatatatag tgtcgtatga accagcaaag
      301 caagaagatg ctttagagaa aattggtgag atagagcata gaattcgcca ttaccggata
      361 ccgaataaaa atttcacatc taattattta agcgaaggga cagaacttta taaagcgaaa
      421 aatggagatg agtttccaag gactattttg tttaaagaag acggcgaata ttttattgca
      481 tcagaggcta tgaagtagcc taataaaaag cgttagttta ttttttctct taatagagaa
      541 agtttatcgt ctacaactaa atggaacata tgtaaaagta tactgattgg catacttttc
      601 atttttaaga aaaatcattg attctaaatt taagtagagt gaacataaaa aacgccatgc
      661 ttcatttccc taaaaacagg gaagtaagcg tggcgttttt tagctatatg tagtaaatac
      721 agcgagcatt ttttctaaat ctttctcgga tcttgcaaag agcatcaaac gctggcgatt
      781 ggtttcaatc acgagcacac catcctctga caaattcatc cgttcgattt ttgcataagg
      841 gaagaataac agggcgtaaa aaagtccgga ttctttgaaa acagctttcg aactgcgaaa
      901 gaagcagata tagatgaata acacacccat aatcccaagc agaacagaag tggaaaatgg
      961 tccttcacga aagaacgtat tggaaacgaa taacagaacg ataattccaa caaaaatata
     1021 accgtcccag cgtccacgag aacgcaattt gacacttaaa accgtcttcc ctttccaaag
     1081 tggaattact gcatcattat acaaaatata cagtaccgtc aagatgtttg ccgcaaacaa
     1141 aaagatatta gtagcatccc aaaccatttt agctatcact cacaatctat cattgatata
     1201 gtttagtaat attgtaacat aattatgcgg ggaagagggg gaactgggtt tgaggataat
     1261 catttagaga ggctctttcg gcacgataag acacaaaaaa gaaccggaat tttaatcccg
     1321 gttcttttcg aattattata accacccatt acccaagtgg tgaataacca gctggtggaa
     1381 gtcctaagat accagaccag taacctagaa taccaacaac gaatagtcct aaaatcaacc
     1441 ataaagcatt gactttcttc ttgagtatcc acatacaagc gaatgtgagt agaagggcaa
     1501 gaagacctgg cattaattgg tccaagatac tttgaacagt agttggaacg tctttaccag
     1561 ttttagagtc ttctgttgta taagctacta gtggaacata gattgtggtc catttattaa
     1621 caagggcacc catgacgaat agtccaagaa tggaagctcc ttctgttagt ttttgaagca
     1681 aaccgccaga catatcagat acaacatctg taccttttgt atatccgtag aacacgcccc
     1741 aataacggaa acctaaacga attgcattaa atagtacgaa gaataaaatt ggtccgatga
     1801 tactaccgtc agttgcaaac cctgcaccta aagcggcaag tactggacga actgttcccc
     1861 agaaaattgg atccccaacg ccggcaagtg gtcccattag acctacttta ataccattga
     1921 ttgcaccgtc gtcgatatca gcaccattgg ctttttgttc ttccatcgcg gttgttacac
     1981 ctaagatagg agcggccata tatggatgcg tattaaagaa ctcaaggtga cgtttgatag
     2041 cttgttctct ttcaggtcct ttttcaggat aaagacgttt aattactgga attactgaga
     2101 aacagaatcc tagagattgc atacgttcaa agttccacga cccttggaag aggttggaac
     2161 gtatgaacac gcccattaag tcacttttcg ttattttctt ttcattaact gtaatttgtt
     2221 cactcatatt tttctccccc ttccttagtc gtcaaggtcg tcgtcgagat catcatccgc
     2281 tgatcgtccg ccgccgcccc cgccgtattg ttggatagct tctttcaatt gatatttagg
     2341 gtttagttgg atataaatga ttgctgcaac tagtcctaaa acacctagtg ctactaagtt
     2401 aaacgcagta aatgctgcga caacaaaacc taagaagaag aaaggcatta aatatttagc
     2461 ggacatcatg ttaataacca tggcgtaacc aacaacaacg ataaatccac cagctacgtt
     2521 tagaccatta acaataacgt ccggaatggc attgagtaaa ttttcgactg cttgtgtacc
     2581 aactgttacc gcaacgataa cggctggaat tgcaatacgc atagcttgaa gtagtagtgc
     2641 tgtaacatgt atccagtcga gacttcgcag attaccttcc ttaccagctt tatcagccat
     2701 gtgttggaat gcaactgtaa ttgtacgaac tagaattgta agtacttgac caagagcagc
     2761 tagaggaatc gcaagcgaaa tacctacgct gatatcttgt cccccagtaa taactaagat
     2821 agtagaaata atggatgcaa gggcagcatc tggagcaacc gcagctccga tattcatcca
     2881 tccaagcgcg atcatttcaa gtgttccccc aataataata ccagttgtaa tatccccaag
     2941 aacaagacca attaacgtac aggcaattaa tggacggtgc gtttgccact catccaaaat
     3001 actacccata ccactaatac aggatacgag gaatactagg attaattgta ttgctgacat
     3061 atatttccct cccaattttt ctttagaatg ataaaaaaag ataatttcat tatgatgact
     3121 gaataaatta agcatctatt acataagctt ttattcatga atcacccctt taaaggtctt
     3181 cctttaaacg tttgcatttt cggggctcta aaaaacaagc gagccgcgga tgaattattt
     3241 atctttatct agtaatggga taagtttgac tttattgtca gaagcgactt tacgaatttc
     3301 aagttcaatt cctttttcat ctaatttgcg gaatgctgct tcatccgttt cgtccacaga
     3361 cacagcattt gtaatcatgt gtttaccttc gcggaatgcc ataccaccaa tgtttacagt
     3421 tgtaatgttt acacctgctt ctacgagtgt tagcacatcg gtagggttag tgaataatag
     3481 catgactgga gttgtagcat atttagggtt gttgtatacg cggatacctt tttgtacatc
     3541 cacgacgctt gctttaactc ctggaggtgc tacttgtgta agaagtgttt tacgcacttc
     3601 atcttttgct acatcgtcac taataacgat gatacgttct acctgcgttt cttttgtcca
     3661 aacggttgct acttgaccat gaattaagcg atcatcaata cgtgctaagc gaatttccat
     3721 tataaatcgt cctccccgac ttcggtttct atttttggta atgattgttt gagtgactta
     3781 acgccacctg atcctgctgt aagagctgtt tcaactagat ctttttgatt acttgcagcc
     3841 cgcattgaga gcgtttcaag taacatggga atattgaccc ccgtgacaac atccatattg
     3901 tcttctggaa gggcgatttg gctagatgcg ttataaggac tgccgccaaa taaatcaacc
     3961 ataaaaataa cgccttcaga agtatccaat ttgtctagtt tttctttgta tttggtaata
     4021 agcgtatcag tgttttctcc aggaacaaaa gtaataaatt ctacattgtc ctgtttgccg
     4081 ataatcattt cagttgattt caacaattca cgcgcagctt caccatgtgt gccaatgata
     4141 attccaactg gcataggtat ctcctcctta agcgtggata taatcatcca ttaatactaa
     4201 cgcaaaaact gtgccaacat ttctgtatta aacaacctcc tttgctaata gaagcggttc
     4261 aaggcttttg taagcgtgta ctaacagaag cggcgcgcct taatacgcta gatacgtagc
     4321 ttaatacact aagtactaat cttagacata catacatcat taccctaaaa gattagccag
     4381 aaaacgcaat tgctgaaaat aaaacaagcc aacttatgaa aaaatgttgg cttgtttgta
     4441 attatgaaag tacttctggt tggatttcgt tcaaaatatc atacaaataa catagttcgt
     4501 cattcgtcag ttttaagttc attttgtaga taacttcttt atttgtttgt tccagcgctt
     4561 taaagatatt tgtttcaagc atatcttttg gttcacggta aattaaacca tcatttagaa
     4621 ccatacgctc taaggcgcaa ccgacatgga tgagtagatt gattttaaag gtattatcaa
     4681 gtttgtatcc tagctttttc tccagtacac tagcaaacga gcttagaatt tcaatcgttt
     4741 tcttcggatt gaggtaggtt agaaattcgt taagactttc ttcgataatt tcttttgcga
     4801 tgcgaccagt ttcgcctttt tttacgataa tattacgttg cttcacgagg ctaacaagtt
     4861 gctcctcgcc atcaattccg aaaagtcgtt cgagcgggat gaaggggatt tggattttcg
     4921 gatcttgaat accgactgcc atcaaaatat cattttcttc ttgtaactgc tccaatttcg
     4981 tatccatttc atgcaaacca atcggaatca ctttaatggc atctgtcgta atggtatcta
     5041 aaatattttc gataaacagt tgtaattttt ctgcagtacc ttcgccagtc gcgcaaatgg
     5101 taatgatggc gtgtggtttt tgattggaat caagtgtatc gtcatcagaa ttatagccac
     5161 cataacctcg gaaatctttc agggaatcgt aaatgctatc gagttccatg tcgagaatat
     5221 tggattttcg aactgcttca ataacagttg cggtggagac catatcaatc gagcgaactg
     5281 gaatgccagt acgttccgaa atgaccggag caaaacttgt aagggagccc atatcgacca
     5341 gaagaagtag accgcgcccc atatccattt ctttcgcgcg ctcggtcaat ttatcaagca
     5401 cgattttcgg actttgatca agaggcatat cgattccttc cacgagtcct tcaccgagta
     5461 gttttttcgc aacactaacc atgctactcg ctgtattatt cccatgcgtt gcgacgagta
     5521 cggcgacacg agcattttct tgttctttta aaagggaact aatgagtagt gttaaataca
     5581 tgacttccat attaggaacc cggatgtgga aagtagcctc aatatcatcc ttaatttccc
     5641 gtgataattc ataggcttcc ggttgatcat tgaccacatt ttcgatattc gtatatttta
     5701 atggtttgtt actttcaatt cgtttaataa aagaggtaag gtgaaggcta aatgcaagca
     5761 agaagcgctc gtttaacttt ttaccaagct gatgttcaat tcggagttca acaccttccg
     5821 caaaattcag gatctcttca ttgacgattt ttaagatatt ttcgcgattg tggatcgtat
     5881 ttttaaactt attgtaaaag ctgttaaggt gaatatcgat atccatcttg ataaatttct
     5941 taatatcatc atcttccaca ccttgatcca ttaaaatcga tgctttgtct tcaatgattt
     6001 tgtaaaggtt gaaattcggc tcatattcgt ccgatgtaat caacgtatta tttagttcag
     6061 ggaaaatcgt cgtatatggc tccaagtatt ccgcaattgc ttgaagttcc ttgcgacggt
     6121 tactgaagtg gaagaagccg tcttttatat taatcggcaa cgttttaaaa tcaatcaaaa
     6181 tctcttcatc tttgtcgaaa ctattaagga aaccttgtgc gcaaacgagt tgaatgttgg
     6241 attttaattg cccgatattt ccataagttg tattaccaat cagcgctttg gcagcttcat
     6301 cttcaatacg aatcggttta ttaactcggt gcgcctcact agaaagtaag tattttaaaa
     6361 gttccacacg ttcaaacgcc gtacgttcct ccaaacttgg cagcgtaata ataatcggaa
     6421 tacgacgcat aaacgttttc aaaagcgaag attccggatt ttcggtagta gcaccgataa
     6481 ttaaaacgtt cgattttcgg gttcgatccg tttcgccaag tttattatac gtaccagagt
     6541 ccattaagta aaaaatcatt tcctgacctt caggagggag acggtgaatt tcgtcgagaa
     6601 acaaaattcc accttccgct ttttctacaa gtccaccttt gtcattgtca gcaccggtga
     6661 aagcaccttt aacatgccca aaaatgtgcg acatcaaaag ttgcggatta ttatagtaat
     6721 cggcgcaatt gaaaataata aacggcgcat cagcaggtag acgtttggca tgttgcgaaa
     6781 aacgatacat caaattagca aaaagtgtct taccaacacc agtttgtccg agaatcattg
     6841 tatgtaaacc atttggtgga tagagtacag cggctttggc ctgctccaca ggggttttaa
     6901 gactgtcatt aacaccaatt aaatcatcaa aagggcttct ttcaacaata cttggtttga
     6961 gcatttttaa aaggggctca cagctgtcaa actccaattc attatcagaa agtgtacgcc
     7021 caatttcatc ttctaccgct tttttaggaa aataaagcac tggtcggcca acgattttaa
     7081 tgatttttcc ttgtctgtga agttcattca attccatact gacattattt cttaaaatag
     7141 ataatgtttc tgaaatagta ctagctgtaa aaccttcatt cttctctaat tgttcgcgaa
     7201 tggttttcgt ggaaggattt tctaaaataa attcataaat acggtcaata cgcttcatca
     7261 taaaacctcc atttagtgta tcgat
//
LOCUS       DASDXX010000135         7267 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.135, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000135 DASDXX010000000
VERSION     DASDXX010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7267
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.135"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            78..968
                     /gene="inlC"
                     /locus_tag="U0280_002150"
     CDS             78..968
                     /gene="inlC"
                     /locus_tag="U0280_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 3 internalin InlC"
                     /protein_id="HEM2272075.1"
                     /translation="MKKNNWLQNAVIAMLVLIVGLCINTGSGTKVQAESIQRPTPINQ
                     IFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIKSLAGMQFFTNLKELH
                     LSHNQISDLSPLNDLTKLEELSMNRNRLKNLNGIPSACLSRLFVDNNELRDTDSLIHL
                     KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV
                     NEPVRYQPELYITNTVKDPDGRWISPYYISNGGNYVDGCVLWELPVYTNEVSYKFSEY
                     INVGETEAIFDGTVIQPIQN"
     misc_feature    1189..1327
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            1410..1925
                     /gene="infC"
                     /locus_tag="U0280_002151"
     CDS             1410..1925
                     /gene="infC"
                     /locus_tag="U0280_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEM2272076.1"
                     /translation="MSKDMLVNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLD
                     LVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKVIVMKEVRLSPTIDEHDFDTK
                     LRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRS
                     MFLVLAPLHEK"
     gene            1947..2147
                     /gene="rpmI"
                     /locus_tag="U0280_002152"
     CDS             1947..2147
                     /gene="rpmI"
                     /locus_tag="U0280_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEM2272077.1"
                     /translation="MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKL
                     RKSAMVSAGDFKRIRQMVAKMK"
     gene            2187..2546
                     /gene="rplT"
                     /locus_tag="U0280_002153"
     CDS             2187..2546
                     /gene="rplT"
                     /locus_tag="U0280_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEM2272078.1"
                     /translation="MPRVKGGTVTRKRRKKIVKLAKGYYGSKHLLFKVANQAVMKSYQ
                     YAYRDRRQKKRDFRRLWIARINAAARMQDLSYSKLMHGLKLAGIDINRKMLADLAVND
                     IASFNTLADSAKKALAK"
     gene            complement(2587..3342)
                     /gene="xth"
                     /locus_tag="U0280_002154"
     CDS             complement(2587..3342)
                     /gene="xth"
                     /locus_tag="U0280_002154"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEM2272079.1"
                     /translation="MKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIE
                     LDLPAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEEFFMV
                     TVYTPNSQAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTN
                     RKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYF
                     VVSERLKDKLVDAKIHADVLGSDHCPVELELNL"
     gene            3426..3956
                     /locus_tag="U0280_002155"
     CDS             3426..3956
                     /locus_tag="U0280_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEM2272080.1"
                     /translation="MGNYVVLLRAVNVAGKNKVNMKNLQAALQEVGFQNVITYIQSGN
                     LVLSSMLQTELEVATKITEVMKATFDLTIDVFVFSEQNYSQIIANNPFPPETIGEEER
                     WMAAFYNENIAIARQKNEQAEVIAIGRVLYIHIFSNQIHTLKLPVFLGEYKKTITTTR
                     NWRTTLQLQTLLDSQE"
     gene            4014..5246
                     /gene="pepT"
                     /locus_tag="U0280_002156"
     CDS             4014..5246
                     /gene="pepT"
                     /locus_tag="U0280_002156"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEM2272081.1"
                     /translation="MKEELLKRFTKYVKVDTQSNEESKACPTTPGQMELANILVTELK
                     EIGMQEVTVDEFGYVMATLPSNTTKEVPVIGFLAHLDTATDLTGKNVQPQVHENYDGK
                     DIVLNKDLNVVLSPKQFPELADYKGKTLITTDGTTLLGADDKAGITEIMVAMNHLINH
                     PEIKHGKIRVAFTPDEEIGRGPERFDVEAFGAKYAYTMDGGPLGELEYESFNAAGAKI
                     TFNGNSVHPGTAKNKMVNAVKMAMEFNAHIPKDEAPEYTEGYEGFYHLISLNGDVEQA
                     KAYYIIRDFDHLKFVERKTHIASIAKELEEKYGEGSVELKLNDQYYNMREKIEPVKEI
                     VDIVSAAMRNLDIEPKISPIRGGTDGAQLSYKGLPTPNIFGGGENFHGKFEYVALESM
                     VKATEVIIEVARLFEEKE"
     gene            complement(5265..5627)
                     /locus_tag="U0280_002157"
     CDS             complement(5265..5627)
                     /locus_tag="U0280_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272082.1"
                     /translation="MYETMIAKAGVRELLGMDTSLIYGSFAYKMEGEWMDLTGLWISN
                     ADALIFYLENEDVYLLKKFDYERIEKVEQKVSILSMTKKLILHLNNKESYTLLVANGE
                     AKVFTARVNERIEKVSLG"
     gene            complement(5677..6450)
                     /locus_tag="U0280_002158"
     CDS             complement(5677..6450)
                     /locus_tag="U0280_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272083.1"
                     /translation="MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLL
                     QLLNGYLWPSSGNLQVLGHVFGQTSLPELRKSIGWVSNALDHQLKEYEFSEQIVLSGK
                     FASIGIYEKVTTAEIDQAKKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKL
                     LILDEPCNGLDLFAKERLLERIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGE
                     ITHHGKTENLLTEEVLQDFYQKPVELIRIKDGSIAVYPK"
     gene            6519..7124
                     /locus_tag="U0280_002159"
     CDS             6519..7124
                     /locus_tag="U0280_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2272084.1"
                     /translation="MKQEEIIIAAQKWMQSHFEKETTGHDWEHIKRVWHLSKQIQATE
                     GGDKFAIELAALFHDYNDSKLTSDPAQATEVITHWMKGKEIPEEVISKIIRIIQSVSF
                     KNGKNPTQASTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANRDHPENTTLQH
                     FYDKLLLIQKQLKTKTGRELAGEKQKIMQEFIHALEKELKI"
BASE COUNT         2587 a         1375 c         1301 g         2004 t
ORIGIN      
        1 cacagcgttt gttaaatagg aagtatatga aaatcctctt ttgtgtttct aaatttattt
       61 ttaaggagtg gagaatgttg aaaaaaaata attggttaca aaatgcagta atagcaatgc
      121 tagtgttaat tgtaggtctg tgcattaata cgggttctgg gacaaaagta caagctgaga
      181 gtattcaacg accaacgcct attaaccaaa tttttccaga tcccggccta gcgaatgcag
      241 tgaaacaaaa tttaggaaag caaagtgtta cagaccttgt atcacaaaag gaactatctg
      301 gggtacaaaa tttcaatgga gataatagca acattaaatc tcttgccgga atgcaatttt
      361 tcactaattt aaaagaactt catctatccc acaatcaaat aagtgacctt agtcctttaa
      421 atgatctaac taaattagaa gagctatcta tgaatagaaa tagactgaaa aatttaaacg
      481 gaattccaag tgcttgttta tctcgtttgt ttgtagataa caacgaactc cgagatactg
      541 actcgcttat tcatttgaaa aatctagaaa tcttatctat tcgtaataat aagctaaaaa
      601 gtattgtgat gcttggcttt ttatctaaac tagaggtatt agatttgcat ggtaatgaaa
      661 taacaaatac aggtggacta actagattga agaaagttaa ctggatagat ttaactggtc
      721 agaaatgtgt gaatgaacca gtaagatacc aaccagaatt gtatataaca aatactgtca
      781 aagacccaga tggaagatgg atatctccat attacatcag taatggaggg aattatgtag
      841 atggttgtgt cctgtgggaa ttgcctgttt atacaaatga agtaagctat aagtttagcg
      901 aatatataaa cgttggggag actgaggcta tatttgatgg aacagttata caacctattc
      961 agaattagga cttatgcata catgtttgat gttttgaatg gatatgcaca ctgtatactt
     1021 ttagctctcg tatagtcacg agagcttttt caatatgaaa gttttaactg ccttttgaca
     1081 gaaagaacgt ttattcgtat aagattgccc agaggtaaag aaactatttt atttacaatt
     1141 caccttgaca ccaaaaatcc catatgatat agtaagtaag gttattaaac aagaaagaag
     1201 aagcaacccg cttctcgcct cgttaacacg aacgttttca ggcaaaaaat tcaaactttc
     1261 gtcgcgtaac ttacgcgatt ttgaatgtgc gggattgctg aaaagcagcc cgttttttta
     1321 tggcctccga acgaatgagt tagcaggccg cagatttgaa cagctatttt ctatcttgtt
     1381 gtaacaaaat taagtggagg tggctcacca ttagcaaaga catgttggta aacgatggga
     1441 ttcgtgcacg tgaagtaaga ttgatcgacc aagacggtga acaattaggc gtgaagagta
     1501 aaatcgatgc gcttcaaatt gctgaaaagg ctaatcttga tctagtgctt gttgctccaa
     1561 cagcgaaacc gccagtagct cgtatcatgg actacggtaa attccgtttt gaacaacaga
     1621 agaaagataa agaagcccgt aagaaccaaa aagtcatcgt gatgaaagaa gttcgtttaa
     1681 gtccaacgat tgacgaacat gacttcgata cgaagctacg taatgcacgt aaattccttg
     1741 aaaaaggcga taaagtaaaa tgctctatcc gttttaaagg tcgtgccatt acacacaaag
     1801 aaatcggtca gaaggtgctt gaccgttttg caaaagcgtg cgaagacctt tgtacaattg
     1861 agcaaagacc aaaaatggac ggacgttcca tgttcttagt cctagcacca cttcatgaaa
     1921 agtaaagttt tgaggaggaa aaattcatgc caaaaatgaa aacccaccgc ggttccgcta
     1981 aacgtttcaa gagaacagga tctggaaaat taaaacgcag acacggcttc actagccata
     2041 tgttcgctaa caaatcccaa aaacaaaaac gtaaattgcg taaatctgca atggtatcag
     2101 ctggcgactt caaacgtatt cgtcaaatgg tcgctaaaat gaaataagag aaacaacatt
     2161 tttgtaaatt ctaggaggta gacaatatgc cacgcgtaaa aggcggaaca gtaacacgca
     2221 aacgtcgtaa aaagatagtt aaattagcca aagggtatta tggctctaaa catttattat
     2281 tcaaagtagc taaccaagcg gtaatgaaat cttaccaata tgcttataga gatcgtcgtc
     2341 aaaagaaacg tgatttccgt agattatgga tcgcacgtat caatgcggca gctcgtatgc
     2401 aagatctttc ttacagcaaa ttaatgcacg gcttaaaatt agctggtatt gatattaacc
     2461 gtaaaatgct tgcagactta gcagttaatg atatcgcatc attcaacaca cttgctgatt
     2521 cagcaaaaaa agcattagct aaataattca aaaatcctca ctctttggag tgaggatttt
     2581 tttaggttat aaattaagtt ctagctcgac aggacaatga tccgaaccaa gcacatccgc
     2641 atgaattttg gcatccacta acttatcttt caaacgttcc gatacaacaa aataatcaat
     2701 ccgccaacca gtattcctag cacgcgcgtt cattcggtaa gaccaccaag aataagcatc
     2761 ggtcaaatct gggtaaaaat aacggaaact atcaataaat ccagcatcta aaaatgcaga
     2821 aaatttcgcg cgttcctcat ccgagaagcc agcattttta cgatttgtct tcggattttt
     2881 taaatcaatt tcttcgtgcg caacattcaa atcgccacaa agcacaaccg gcttcgtttt
     2941 atccaagttt tttacatatt ccaaaatcgc atcctcaaac gtcatccggt aatctaatcg
     3001 ttttaattca gcttgcgaat tcggcgtata aaccgtcacc ataaaaaatt cctcaaattc
     3061 aagtgtgata acacgacctt ctgtatcatg ttcaggaacc cctaaaccat attgaactga
     3121 taacggctcc acttttgtaa aaatcgcggt accagaataa ccttttttca ccgcataatt
     3181 ccagtaatct ttatatgctg gcaaatcaag ttcaatttga ccttcttgta atttagtttc
     3241 ctgcaaacaa aaaatatccg catctacttc ttcaaaatac tccaaaaagc ctttttttac
     3301 agctgctcga agcccgttta cattccaaga aattaatttc acctaaaaaa cctcccatcg
     3361 ctaatagcct tattataacg taagtcacat gctataatgt agttaaacga ttgggaggga
     3421 gatagatggg gaattatgta gtgttattaa gagcagtaaa tgttgctgga aagaataaag
     3481 taaatatgaa aaatctacaa gctgctttgc aagaagtagg tttccaaaat gtcattactt
     3541 atatccaaag cggcaacctc gttctaagct ccatgttaca aacggaacta gaagtagcga
     3601 caaaaataac cgaggtaatg aaagcaacgt tcgatttaac tattgatgta ttcgtatttt
     3661 cggaacaaaa ttatagccaa atcatcgcaa acaatccatt tccaccagaa acaattggcg
     3721 aggaggaacg ctggatggcc gctttctata atgaaaatat cgctattgcg agacaaaaaa
     3781 acgagcaagc cgaagtaatc gcgattggtc gcgttcttta tatccacatt ttctccaacc
     3841 aaatccacac cttaaaatta ccagttttcc ttggcgaata taaaaagaca ataacaacaa
     3901 cgcgcaattg gcgaacaacc ctccaattac aaacactact cgacagtcag gaatagaatt
     3961 tttcgaaaat caagtttata atgaaaaaga atcaatttaa gggagtggtc ggaatgaaag
     4021 aagaactatt aaaacgattt acgaaatatg taaaagtaga tacacagtca aatgaagaaa
     4081 gtaaagcttg tccaacaaca ccaggtcaaa tggaactggc aaacattctc gttacagaac
     4141 taaaagaaat cggtatgcaa gaagttactg ttgacgaatt tggttatgtt atggcaacac
     4201 ttccttctaa tacaacgaaa gaagttccag taatcggatt tttagctcat ttagatacag
     4261 cgacggactt aacaggcaaa aacgtccaac cacaagtcca cgaaaattat gatggtaaag
     4321 atatcgttct aaacaaagac ttaaacgtgg tactttcacc aaaacaattt ccagaactag
     4381 ctgattataa agggaaaaca ctgattacaa cagatggaac aacgctactc ggtgcagacg
     4441 ataaagcggg cattaccgaa attatggtgg caatgaacca tttaattaac catcccgaaa
     4501 tcaaacacgg taaaattcgt gttgctttca caccagatga agaaattggc cgaggaccag
     4561 aacgttttga tgtagaagca tttggcgcaa aatatgctta tacaatggac gggggcccac
     4621 ttggagaact agaatatgaa agttttaacg ctgcaggtgc caaaatcact tttaatggta
     4681 atagtgttca ccctggtaca gcaaaaaaca aaatggttaa tgctgtcaaa atggcaatgg
     4741 aattcaatgc acacattcca aaagacgaag cgcctgagta cacagaaggt tacgaagggt
     4801 tttatcattt aatttcctta aacggtgatg tagagcaagc caaagcctac tatattatcc
     4861 gcgatttcga tcatttgaaa tttgtggaaa gaaaaacaca tattgctagt atcgccaaag
     4921 agttagaaga aaaatacggc gaaggatcgg tagaattaaa actgaacgat caatattaca
     4981 atatgcgcga aaaaatcgaa ccagtaaaag aaattgtgga tatcgtcagc gcggcgatga
     5041 gaaatctaga cattgaaccg aaaatcagcc caattcgtgg cggaacagac ggcgctcaac
     5101 tttcctacaa aggactacca acacctaata tttttggtgg aggagagaac ttccacggta
     5161 aatttgaata tgttgcatta gaaagtatgg ttaaagcaac agaagtaatc attgaagtgg
     5221 ctcgtttatt tgaagaaaaa gaataataaa aaagtgagtc tagttcatcc tagactcact
     5281 ttttctatgc gctcatttac tctagcagta aagacctttg cttcgccgtt tgcaacaagt
     5341 aacgtatagc tttctttatt attaagatgt aaaatcaatt ttttcgtcat ggaaaggata
     5401 cttacttttt gttctacttt ttctattctt tcataatcga atttcttcag taagtagaca
     5461 tcttcatttt ctaaataaaa aatcaacgca tctgcatttg aaatccaaag tcccgttaaa
     5521 tccatccatt cgccttccat tttataagca aatgaaccat aaatcagact agtatccatc
     5581 ccgagaagct cacgtacacc tgcttttgca atcatcgttt catacaaaac atttcgcccc
     5641 tctacatacg catttttcgt attctaacta taccatttac ttcggataga ctgcaatgga
     5701 gccgtctttt atccgaatta attctactgg cttttgataa aaatcttgaa gaacttcctc
     5761 tgtcaaaaga ttttctgttt ttccgtgatg agttatttcc ccgtcacgca gtaaaatgat
     5821 attatcgaag cagggaagaa tttcttccgt atggtgagta acaaaaagca tcgttgggga
     5881 ttctggcagt tccgctatct tcttaattct ttctaataag cgctcctttg caaatagatc
     5941 aagcccatta caaggttcat ctaaaataag taacttagga cttgccatta aagcacgtgc
     6001 aattaaaaca atttgacgct ctccttgcga taaaatttta tacggctttc caataagtgt
     6061 gctaccgcca caatcggtaa gcagcttttt cgcttggtca atctccgcag tagtgacttt
     6121 ctcataaatg ccaatacttg caaatttccc actaagtaca atttgctcgc tgaactcata
     6181 ctctttcagc tgatgatcaa gcgcattact aacccaacca atcgatttac gtaactctgg
     6241 caaagaggtc tgtccaaaaa catgcccaag tacttgaaga tttccactgc taggccaaag
     6301 atacccattt aaaagttgca acaaagttgt ttttccagaa ccgtttagtc cgagtattgc
     6361 ccagttttcc ttatcattaa ccacccaatt aatatccgat aaaatcattt tattatcacg
     6421 ctttaaacaa acattctcaa aagcaaacat cgaatacccc atttccattt tctactattg
     6481 tacatgaaaa taacgtaaaa aaggagccaa tactaatgat gaagcaagaa gaaataataa
     6541 ttgcagcgca aaaatggatg caatcccatt tcgaaaagga aactactgga cacgactggg
     6601 aacatattaa acgagtctgg catttaagta aacaaatcca agcaacagaa ggcggagata
     6661 aatttgcaat cgaattagca gcattgtttc acgactataa tgatagcaaa ctaacatcag
     6721 atccagcaca agcaacagaa gtaatcacgc attggatgaa aggaaaagaa attcctgaag
     6781 aggtaatcag taaaatcatc cgaatcatcc aatcagtctc atttaaaaat gggaaaaatc
     6841 ctacccaagc ttctacaata gaagaaaaaa tagttcaaga tgcagaccgc ttagatgcaa
     6901 ttggtgcaat tggtatagct agaacattta catacggagg ggcgcacaat agagaaatcg
     6961 ctaatcgaga tcatccggaa aataccacat tacaacactt ttacgataaa ttgctcctaa
     7021 ttcaaaaaca gctaaaaaca aagactggtc gggaacttgc aggagaaaaa caaaaaatta
     7081 tgcaggaatt tatacatgca ctagagaaag aattaaaaat ataacttaaa aggcttgtat
     7141 ttaatataaa gctgttatat aatgataaag ctgaattgat acaaattaat tcatcaaaaa
     7201 cattttaaaa atagttgttg acgtgatttc aactttatgg taagatttaa aagttgcgtt
     7261 aacaaag
//
LOCUS       DASDXX010000136         7198 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.136, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000136 DASDXX010000000
VERSION     DASDXX010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7198
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.136"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1107
                     /gene="mpl"
                     /locus_tag="U0280_002160"
     CDS             <1..1107
                     /gene="mpl"
                     /locus_tag="U0280_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloproteinase Mpl"
                     /protein_id="HEM2272085.1"
                     /translation="KSYIGNPVKEKEIIINSRTKRLVYNIKLIFAEPEVASWIIQVDA
                     ETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGL
                     IRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDG
                     KGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSA
                     GLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIRSIKDPDKYNQAAH
                     MKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKAQ
                     FTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN"
     gene            1307..3226
                     /gene="actA"
                     /locus_tag="U0280_002161"
     CDS             1307..3226
                     /gene="actA"
                     /locus_tag="U0280_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="actin assembly-inducing protein ActA"
                     /protein_id="HEM2272086.1"
                     /translation="MGLNRFMRAMMVVFITANCITINPDIIFAATDSEDSSLNTDEWE
                     EEKTEEQPSEVNTGPRYETAREVSSRDIEELEKSNKVKNTNKADLIAMLKAKAEKGPN
                     INNNNSEQSENVAINEEASGSDRPAIQVERRHPGLPSDSAAEIKKRRKAIASSDSELE
                     SLTYPDKPTKATKKKVAKASVTDTSESDLDSSMQSADESTPQPLKANQQPFFPKVFKK
                     IKDAGKWVRDKIDENPEVKKAIVDKSAGLIDQLLTKKKNEEVNASDFPPPPTDEELRL
                     ALPETPMLLGFNAPATSEPSSFEFPPPPTDEELRLALPETPMLLGFNAPATSEPSSFE
                     FPPPPTEDELEIMRETAPSLDSSFTSGDLASLRSAINRHSQNFSDFPPMPTEEELNGR
                     GGIPTSEEFSSLNSGDFTDDENSETTEEEIDRLTDLRDRGTGKHSRNAGFLPLNPFTS
                     SPVPSLTPKVSKISAPALITDVTKKAPFKNPPQPLNVFNKKTTTKTAPKKITPVNTAP
                     KLAALPITKAQETELGENKAPFIEKQAETNNRPIDMPSLPVIQKEVTERNKEEMKPQT
                     EEKVVGESEPANNVNGKKRSAGIEEGKLIAKSAEDEKAKEEPVNHTTLILAMLAIGVF
                     SLGAVIKIIQLRKNS"
     gene            3262..4131
                     /gene="plcB"
                     /locus_tag="U0280_002162"
     CDS             3262..4131
                     /gene="plcB"
                     /locus_tag="U0280_002162"
                     /EC_number="3.1.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine phospholipase C"
                     /protein_id="HEM2272087.1"
                     /translation="MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDS
                     KLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGI
                     YDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTA
                     FYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRF
                     CSNDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTL
                     AGFLEFWSKKTNE"
     gene            4203..4526
                     /locus_tag="U0280_002163"
     CDS             4203..4526
                     /locus_tag="U0280_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463737.1"
                     /note="This small protein, a possible lipoprotein, is
                     found in Listeria monocytogenes; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5502 family protein"
                     /protein_id="HEM2272088.1"
                     /translation="MYIKGRLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKE
                     IECLGSCKIKNTNQKIHFFSIKKNLFEEKGNMAGILNEHERKGADKSIFIVILDDEKG
                     IANEE"
     gene            4659..5120
                     /locus_tag="U0280_002164"
     CDS             4659..5120
                     /locus_tag="U0280_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HEM2272089.1"
                     /translation="MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLT
                     YTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKA
                     IETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK"
     gene            complement(5173..5505)
                     /locus_tag="U0280_002165"
     CDS             complement(5173..5505)
                     /locus_tag="U0280_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative heavy metal-binding protein"
                     /protein_id="HEM2272090.1"
                     /translation="MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFG
                     GRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTA
                     VVIEAQDY"
     gene            complement(5572..6291)
                     /locus_tag="U0280_002166"
     CDS             complement(5572..6291)
                     /locus_tag="U0280_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM2272091.1"
                     /translation="MLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCP
                     DSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQI
                     EKWNIIFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNL
                     PEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLG
                     NTACKVPDAISYIEKARNRTK"
     gene            complement(6324..>7198)
                     /locus_tag="U0280_002167"
     CDS             complement(6324..>7198)
                     /locus_tag="U0280_002167"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM2272092.1"
                     /translation="VNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYS
                     DCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDI
                     LTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPA
                     WSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKA
                     ILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSAD
                     TLKKVLDDAMKQID"
BASE COUNT         2463 a         1273 c         1458 g         2004 t
ORIGIN      
        1 aaaagttata ttggaaatcc agtgaaagaa aaagaaatca tcatcaattc cagaacgaaa
       61 cgcttagttt ataatataaa attgattttt gctgagccgg aagttgcgag ttggattatt
      121 caagtggatg cagaaaccgg cgcaatttta aaaaaacaaa atatgctttc cgaggtagag
      181 cgggctgata cccacaaaga ttttcaagcg cttggtaaag gagctaaccg attactccag
      241 agaccattac atgtcatgaa aataaatgac ctgttttact tagtggatag aactcataaa
      301 ggactcataa gaacttttga tttaaaccat aaaacggacg catcttttgg aaaagtggtg
      361 tcgaataaaa cgaatatgtt tacggatccg gaatttagtt ccgcggtgga tgctcatttt
      421 tacgcaagtg aagtgtacga ttactataaa aatgtccatc aactagagag tctagatggt
      481 aaaggtggag aaattgattc gtttgttcat tatggcttga attgcaataa tgctttttgg
      541 gatggccgag aaattcttta tggagatggg gacaaaaaga atttcaaacc attttcatgc
      601 gccaaaacga ttgttggtca tgaactaacg catgcggtta tccagtattc ggcaggatta
      661 gaatacgaag ggcaatcagg tgcgctaaac gaatcgttcg ccgatgtctt tggttatttt
      721 attgcgccaa atcattggtt gattggtgag gatgtctgtg tgcgtgggtt acgagatggg
      781 cgaataagaa gcatcaaaga tcctgacaaa tataatcaag cggctcatat gaaggattat
      841 gaatcgcttc caatcacaga ggaaggcgac tggggcggag ttcattttaa tagtggtata
      901 ccgaataaag cagcctacaa tacgatcact aaacttggaa aagaaaaaac agaacagctt
      961 tacttccgcg ccttaaagta ctatttaaca aaaaaagccc agtttaccga tgcgaaaaaa
     1021 gcactccaac aagcggcgaa agatttatat ggtgaagatg cttctaaaaa agttgcggaa
     1081 gcttgggaag cggtcggagt taactgatta acaaatgtta gagaaaactt aattcttcaa
     1141 gtgatattct taaaataatt catgaatatt tttttcttaa attagctaat taagaagata
     1201 accaactgct aatccaattt ttaacggaat aaattagtga aaatgaaggc cagattttcc
     1261 ttgttctaaa aaggttgtat tagcgtatca cgaggaggga gtataagtgg gattaaatag
     1321 atttatgcgt gcgatgatgg tagttttcat taccgccaac tgcattacga ttaaccccga
     1381 cataatattt gcagcgacag atagcgaaga ttccagtctg aacacagatg aatgggaaga
     1441 agaaaaaaca gaagagcagc caagcgaggt aaatacggga ccaagatacg aaactgcacg
     1501 tgaagtaagt tcacgtgata ttgaggaact agaaaaatcg aataaagtga aaaatacgaa
     1561 caaagcagac ctaatagcaa tgttgaaagc aaaagcagaa aaaggtccaa atattaataa
     1621 taacaacagt gaacaaagcg agaatgtggc tataaatgaa gaagcttcag gatccgaccg
     1681 accagctata caagtggagc gtcgtcatcc agggttgcca tcggatagcg ccgcggaaat
     1741 taaaaaaaga aggaaagcta tagcatcatc ggatagtgag cttgaaagcc ttacttatcc
     1801 ggataaacca acaaaagcaa ctaagaaaaa agtggcgaaa gcgtcagtta cggatacttc
     1861 tgaaagtgac ttagattcta gcatgcagtc agcggatgag tctacaccac aacctttaaa
     1921 agcaaatcaa caaccatttt tccctaaagt atttaaaaaa ataaaagatg cgggtaaatg
     1981 ggtacgtgat aaaatcgacg aaaatcccga agtgaagaaa gcaattgttg ataaaagtgc
     2041 agggttaatt gaccaattat taactaagaa gaaaaatgaa gaggtaaatg cttcggactt
     2101 tccaccaccg cctacggatg aagagttaag acttgctttg ccagagacac cgatgcttct
     2161 tggttttaat gctcctgcta catcagaacc gagctcattc gaatttccac caccacctac
     2221 ggatgaagag ttaagacttg ctttgccaga gacgccaatg cttcttggtt ttaatgctcc
     2281 tgctacatcg gaaccgagct cattcgaatt tccaccgcct ccaacagaag atgaactaga
     2341 aattatgcgg gaaacagcac cttcgctaga ttctagtttt acaagcgggg atttagctag
     2401 tttgagaagt gctattaatc gccatagcca aaatttctct gattttccac caatgccaac
     2461 agaagaagag ttgaacggga gaggtggtat accaacatct gaagaattta gttcgctgaa
     2521 tagtggcgat tttacagatg acgaaaacag cgagacaaca gaagaagaaa ttgatcgcct
     2581 aactgattta agagatagag gaacaggaaa acactcaaga aatgcgggtt ttttaccatt
     2641 aaatccgttt actagcagcc cggttccttc gttaactcca aaggtatcga aaataagcgc
     2701 gccggctctg ataactgacg taactaaaaa agcaccattt aaaaatccgc cacagccatt
     2761 aaatgtgttt aacaaaaaaa ctacaacgaa aacagcacca aaaaaaataa cccctgtgaa
     2821 taccgcgcca aagctagcag cacttcctat cacgaaagcg caagaaactg agcttgggga
     2881 aaataaagca ccatttatag aaaaacaagc agagacaaac aatcggccaa ttgatatgcc
     2941 gagcctacca gtaatccaaa aagaagttac agaaagaaat aaagaggaaa tgaaaccgca
     3001 aaccgaggaa aaagtggtag gagaaagcga accagctaat aatgtgaacg gaaaaaaacg
     3061 ttctgctggc attgaagaag gaaaattaat tgctaaaagt gcagaagacg aaaaagcaaa
     3121 agaagaacca gtgaaccata cgacgttaat tcttgccatg ttagctattg gcgtgttctc
     3181 tttaggagcg gttatcaaaa tcattcaatt aagaaaaaat agttgaagac gcagaatgaa
     3241 agaaaaagtg aggtgagtga tgtgaagttc aaaaaagtgg ttctaggtat gtgcttgacc
     3301 gcaagtgttc tagtctttcc tgtaacgata aaagcaagtg cctgttgtga tgaatatcta
     3361 aagccccccg cagctccgca tgatattgac agcaaattac cgcataaact tagttggtcc
     3421 gcggataatc cgacaaatac tgacgtaaat acgcactatt ggctttttaa acaagcagaa
     3481 aaaatactag ctaaagatgt agatcatatg cgagctaatt taatgaatga acttaaaaat
     3541 ttcgacaaac aaattgctca aggaatatat gacgcggatc ataaaaatcc atattatgat
     3601 actagtacgt ttttatctca tttttataat cctgataaag ataatactta tttgccaggt
     3661 tttgctaatg cgaaaataac aggagccaag tattttaatc aatcggtggc tgattaccga
     3721 gaagggaaat ttgacacagc attttataaa ttgggcctag caatccatta ttatacggat
     3781 attagtcaac ctatgcacgc caataatttt accgcaatat cctatccacc aggctaccac
     3841 tgtgcatatg aaaattacgt agataccatt aaacacaatt atcaagcaac agaagacatg
     3901 gtagtgaaaa gattttgctc aaatgacgtg aaagaatggc tctatgaaaa tgcgaaaagg
     3961 gcgaaagcgg actatccgaa aatagtcaat gcgaaaacta aaaaatcata cttagtagga
     4021 aattccgaat ggaaaaagga tacagtggaa cctactggag ctagactaag agattcacag
     4081 caaactttgg caggcttttt agaattttgg tctaaaaaaa caaatgaata acaatattta
     4141 ggaatatatt cttatccact cgttagcggg tggatatatt ttatggggag gaagtaagcc
     4201 gaatgtatat aaaagggagg ttaatctttt tctttgtaat gtttgtaatc gcgttatgtt
     4261 ccgtattaat attgctgata ataaaaatga gcgtatggaa agaggaacca tttaatttaa
     4321 gtgatgcaaa ggagattgag tgtcttggaa gttgcaaaat aaaaaatact aatcaaaaaa
     4381 tccatttctt ctccataaaa aagaatttgt ttgaggaaaa gggcaatatg gctggaattt
     4441 tgaatgaaca cgagcgaaaa ggagctgata agtccatttt cattgtaatt ttagatgatg
     4501 aaaaagggat tgcaaacgaa gagtaaagtt atgattagtt gtgacttttt cgtgtcaatc
     4561 aaaaaagtgt tgtgagcaaa tgttcacaaa atatctattg taatagtgca gtttgttagg
     4621 tacccttgaa tagaaaaaac aatgtaggag gaacatctat gaaaatgctt aaaaagggta
     4681 caacggtttt atttgtaatg attatggcgg ttatgttagt cgcgtgtggg gacaaagaag
     4741 aaacgaaaac ttactcactt tcccaaaatg gtgttgattc taaattaaca tacacatata
     4801 agggagacaa agttactaaa caaacagctg agaacacaat gtcatatgct tcgctaggtg
     4861 ttgcttcaaa agaagacgct gaaaaaatgc ttaaagcaac aagcgataaa ttccaaggta
     4921 ttgatggttt aaaagaaaag attgaatata aagatgataa agctattgaa acactagaag
     4981 tagattacac taaaatctct tcggaagata tgaacaaaat ccctggtatg tcttcaaacg
     5041 gtgatacttc taaagggatt agcatggagg aatctgcaaa aatgctagaa tcccaaggct
     5101 ataaagaagt ttcaaaataa atttgcaata aaacaagaag tatccgattc atttggatac
     5161 ttcttgtttt attcaataat cttgcgcttc gatgacaaca gctgtaccag atgcagtgac
     5221 cataagcatt ccgttatcag ctccaagcac ttcataatca atgtcaacac cgataacggc
     5281 atttgcgcca atatctttcg cacgttgttc catttcgcga attgcttcct cgcgagcatt
     5341 aataagttca tcttcatagc cttgcgaacg gcccccgaag aaatttcgaa gtccagctcc
     5401 aatatctttc atgaagttaa cgccggtgat gacttcgccg aaaacgattt ttttatattc
     5461 gataatttgt ttaccttcaa tatttggtga ggttgttaca atcatgagtt atccctccag
     5521 tttttctttt atcatacctc ttactacttt ttctagtcaa aggatatccg gttatttcgt
     5581 acgatttctc gctttttcta tataagaaat agcatccgga actttacacg ctgtatttcc
     5641 aaggtttaca tgaactttcc cgactgattt cgcagcttcc attgcttttt cgtgcaaatc
     5701 gtctttgtaa attccacaag tgataataaa accgttcatt gaatagcggg ttctattggt
     5761 ttctgtttgc agcgtttctt tcgcgcgttg aagtaatgcc tctgcttcag gcaaattgtt
     5821 aatatgttcg ctataaatct gccagcccat ggatttagtt aaatcataat cactttcaat
     5881 ccacgttttg gcgaaaagga gtgcatcatc acgtttgctt acaatcgatg ctagtccaaa
     5941 agttagttgt gaccatgttt cgcgaaaaat gatattccat ttttcgattt gttccgtggt
     6001 tattttgtcg ggattaatcg ctagcaaacc gagataaatc aagtcactat tatttgattc
     6061 aatcagctct acggcgagtt cgtgattttt tgtcagtttt tctcggcgaa taattttctt
     6121 taaatcacca atttttagtc cgtaaagatc taatgaatcc ggacagccgt gattacgaaa
     6181 aattttaatc gtattggggt tttctaaggc ttgtagctcg gtattaagtt ggtcaaaagt
     6241 aatcgtacgc gtcactcctc tcgaataaat taagtataac aaaaaaagca tgcgaaggcg
     6301 catgctttta ggatttgaga atattagtcg atttgtttca ttgcgtcgtc tagaactttt
     6361 ttaagtgtat ctgcagagtt tttcatttgt tctttttctt tgtcgtttaa attcatttca
     6421 acaatatggc gaacgccttg acggttaacg actgcgggag cgccgatata aatgtcgttc
     6481 ataccataat gaccatctag ataaacagaa agtggtaaga tcgcattttc gttatttaga
     6541 attgcctttg taatacgagc tagagctgca gcaacaccgt agaatgtagc gcctttttta
     6601 ttaataattt cataagctgc atcacgaaca cttacgaaaa tagtatccat tgcaccttgt
     6661 tcatcttcgc taatccattc agtgattgga agaccgccga cagttgtgtg gctccatgct
     6721 gggaattctg tatcgccgtg ttcgccaagg atgtaaccat ggacgttacg agcatctact
     6781 tttagatagt cggcaattga catacggaaa cgtgctgtat caaggcttgt tccagaaccg
     6841 ataacacgtt cttttggaag acctgagaat ttccatgtag cgtaagttaa gatatctact
     6901 gggttagaag cgattaagaa gataccgtca aatccgctag ccattacttc atccacgatg
     6961 cctttcatga ttttaatatt acgatttact aaatctaaac gagtttcacc aggtttttgt
     7021 gcagtcccgg cagttacaac aactaagtcc gcatcgtggc agtcgctata atttgctgag
     7081 tagattttct tcggtgtaga aaatggaacg gcatgactta aatccattgc atccccaata
     7141 gttctgtctt tatctatgtc aatgatacca aattcttgtc caatgcttaa gtttacac
//
LOCUS       DASDXX010000137         7181 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.137, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000137 DASDXX010000000
VERSION     DASDXX010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7181
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.137"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..848)
                     /locus_tag="U0280_002168"
     CDS             complement(<1..848)
                     /locus_tag="U0280_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2272093.1"
                     /translation="MSNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLA
                     QQADASGAAVIRFCKSIGLQSFPELKRQLSLDLAQPQKKGYYDIEPNEDFHTITEKLV
                     SNMIQTMNDTASQLDEAKVLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHV
                     LATQDAHVLAMAFATGKKKAVFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNK
                     LKEKADLSLETSRAPEAEIRSTATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSRE
                     ATNRFR"
     gene            complement(936..3347)
                     /locus_tag="U0280_002169"
     CDS             complement(936..3347)
                     /locus_tag="U0280_002169"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEM2272094.1"
                     /translation="MTFNHKKMEPKWQQYWSEHNTFKTTEDKNKDNFYALDMFPYPSG
                     AGLHVGHPEGYTATDILSRMKRMQGKNVLHPIGWDAFGLPAEQYAIDTGNDPEEFTAL
                     NIANFTRQIKSLGFSYDWDREINTTDPEYYKWTQWIFEKLYEKGLAYEAEIAVNWCPA
                     LGTVLANEEVIDGKSERGGFPVFRKPMRQWMLKITAYADRLLDDLDLVDWPENIKDMQ
                     RNWIGRSEGAEVTFKIKDSDETFNVFTTRPDTLFGATYTVFAPEHELIEKITTPEQKE
                     AVEAYKKQVELKSELERTDLAKDKTGVFTGAYAINPINGEEVPIWIADYVLIQYGTGA
                     IMAVPAHDERDFEFAQQFGLNIRPVLEGGDVTKEAFTGDGPHINSDFLNGLAKAEAIT
                     AAIDWLEKEGIGSRKITYRLRDWLFSRQRYWGEPIPVIHWEDGETTLVPEDELPLLLP
                     KATEIKPSGTGESPLANLHDWVNVTDKNGRKGRRETNTMPQWAGSSWYFLRYIDPNNS
                     EAIADKEKLAEWLPVDVYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPFQKLFNQG
                     MILGENNEKMSKSRGNVVNPDEVVEKYGADTLRLYEMFMGPLEASIAWNENGLEGARK
                     FLDRIWRLLVTEEGTLAEKVTTDANANLEKAYHHMVKTVTNHYENLRFNTGISQLMIF
                     INEAYKQDTIPKQYVEGFVQLLSPIAPHLAEELWEILGHTETISYVAWPTYDETKLVE
                     DEVEIVLQVNGKVKSKITVAKSLEKEELEKIAQEDNKMKENLEGKTIRKVIVVPGKLV
                     NIVAN"
     misc_binding    complement(3421..3622)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3751..4716
                     /locus_tag="U0280_002170"
     CDS             3751..4716
                     /locus_tag="U0280_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465186.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HEM2272095.1"
                     /translation="MKQTNPFVYSNDNKRYHTWNYCLREEFGQKTYKVALDGGFDCPN
                     RDGTVAHGGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTN
                     THAPVAELREKFETVLNEPGVVGLSIATRPDCLPDDVVEYLAELNERTYLWLELGLQS
                     AHDETGRLINRAHDYDCYLEGVHKLQKHNIRICTHIINGLPKETPEMMMETTRKVVES
                     GVDGIKIHLLHLLKGTPMVEDYKKGDLEFLTRDGYVNLVADQLEILPPEMVIHRITGD
                     GGVDDLIGPVWSLNKFEVLNAIDAELVRRDSWQGKHYQPVEVISE"
     gene            4713..5291
                     /locus_tag="U0280_002171"
     CDS             4713..5291
                     /locus_tag="U0280_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2272096.1"
                     /translation="MNLRGILPFAHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGI
                     NGHVLGFDIQQMAVDATKARLENAGVSSQVELVCASHARIPAYTSRPVRAAIFNLGYL
                     PGGDKEITTTADSTLESIGHLMQLLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQ
                     QDFHVLSYQFINQKNDAPFVIIIEKRKPRQAN"
     gene            complement(5313..7178)
                     /gene="asnB"
                     /locus_tag="U0280_002172"
     CDS             complement(5313..7178)
                     /gene="asnB"
                     /locus_tag="U0280_002172"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEM2272097.1"
                     /translation="MCGFVGCVHDRITEITGADKETFRQMNSMITHRGPDDEGYFTDD
                     HVQFGFRRLSIIDVENGHQPLTYENERYWIIFNGEVYNYVELREQLVAEGMTFETESD
                     TEVIIATYAKYKEKTAERLRGMFGFVIWDKQEELVYGARDPFGIKPFFYAEEDGKLFM
                     GSEKKSILHALKEKELDEVSLQNYMTYQFVPEPDSLTKNVKRLEPGHQFTKKIGQPME
                     ITTYWKASFAPVTKSEDAWIKEVRDVMYDSVKMHMRSDVPVGSFLSGGIDSSIIAAIA
                     KEYHPAIKTFSVGFERDGFSEIDVAKETADKLGVENISYVISPEEYMKELPKIVWHMD
                     DPLADPAAIPLYFLSREARKQVTVALSGEGADELFGGYNIYNEPNSLAMFNKMPSVFK
                     SMLNSVARIMPEGMRGKSFLERGTTPMEERYIGNAKMFTEKEKQILLPKYQAGHDYTN
                     ITDPFYAETTNYHPVERMQYIDIHTWLRGDILLKADRMTMANSLEVRVPFLDKEVYNV
                     ARNIPDTMKTTNGTTKYILRKAAATFVPEHVLNRRKLGFPVPIRHWLKDEMNAWVKNI
                     IKESPTDHLINKQYVLGLLDDHCAGKFDYSRKIWTVVIFMIWYDVYVADKYDFGK"
BASE COUNT         1927 a         1445 c         1418 g         2391 t
ORIGIN      
        1 tctctaaaac gattcgtggc ctctcgagaa tgtttaattt gttgaatcat ttcgtcgtag
       61 tgatgggatg cataatagta aaataaaatg tcaattacta gcaattgcgc ttgtcttgaa
      121 cttgttgcgg tacttctaat ttcagcttct ggagcacgag aagtttctaa agataaatct
      181 gctttttcct tcagcttatt gctaccaaaa cgtgtaagac taataacaat gacgttgttc
      241 agtttggctt gatctacgag ttgcaagact tctgatgttt ctccactgtt agaaatagca
      301 ataaaaacgg ctttcttctt ccccgttgca aaagccattg ctagaacatg tgcatcttgc
      361 gtagctaaaa catgtttccc tgcacgcagc cacttttgcg aaatatcttc tgctactaac
      421 caagaagccc cgaccccgta tgtataaata gtatctgctt cgccgagtaa ttcgcatgcc
      481 tctaaaactt tggcttcatc tagttggcta gccgtatcgt tcatcgtttg aatcatgtta
      541 gaaactagtt tttctgtgat ggtatgaaaa tcttcatttg gttcaatatc ataatagcct
      601 ttcttttgcg gttgagccaa atctaatgat aattgtcttt ttagttctgg aaaactttga
      661 agtccgattg atttacagaa acggataacg gccgcaccgc ttgcatctgc ttgttgagct
      721 agtttatgaa tcgatgcagt agttgtaaat tctggatttg ctaatactgc ttggccaatt
      781 tttttctctg acttcggcaa atcatttaaa ataccttcta ttcgattgat aatactacca
      841 ttactcatta acttttctcc attccatttt ccgtaattat accaaaaaat tagtcaaaaa
      901 taaaactgcc agccagaagc cagcagtttc cattattagt tcgcaacaat atttacaagt
      961 ttccctggaa cgacaatcac tttacggatt gttttgcctt ctaggttttc tttcattttg
     1021 ttgtcttctt gtgcaatttt ttctagttct tctttttcga gagatttggc aacggtgatt
     1081 ttgcttttta ctttgccgtt tacttgaagt acgatttcta cttcatcttc tactagtttt
     1141 gtttcgtcgt atgttggcca agctacgtag ctgattgttt cggtgtgacc taggatttcc
     1201 cataattctt ctgcaaggtg tggtgcgatt ggtgacaaga gttgaacgaa accttcgaca
     1261 tattgttttg gaatcgtatc ttgtttatat gcttcattga tgaaaatcat cagttgcgaa
     1321 atcccggtat tgaaacgcag gttttcgtaa tggttggtaa ctgttttcac catatgatga
     1381 tatgcttttt ctaagttagc attcgcatca gttgtcactt tttcagcgag tgtgccttct
     1441 tcagttacta gcaagcgcca gatgcggtct aggaatttac gtgcaccttc cagtccattt
     1501 tcgttccatg caatcgaagc ttctagtggt cccatgaaca tttcgtacaa gcgaagtgtg
     1561 tctgcgccgt atttttctac tacttcatca gggttaacaa cattacctct tgatttggac
     1621 attttttcgt tattttcgcc aagaatcata ccttggttaa atagtttttg gaaaggttct
     1681 tttgttggaa ctacaccgat atcgtacaag aatttatgcc agaaacgtgc ataaagaagg
     1741 tgaagcactg catgctctgc cccgccgata taaacgtcaa ctggaagcca ttctgctagt
     1801 ttttctttgt cagcaattgc ttcgctgtta tttggatcga tataacgcaa gaaataccag
     1861 cttgagccag cccattgtgg cattgtattt gtttcgcgac gaccttttcg accgtttttg
     1921 tctgttacgt ttacccagtc atgcaagtta gcaagtggtg attcgcctgt tcctgatggt
     1981 ttgatttctg ttgcttttgg cagaagtagt ggtagttcgt cttctggtac aagcgttgtt
     2041 tccccgtctt cccagtgaat aactggaatt ggttcacccc agtaacgttg tctgctgaac
     2101 aaccagtcgc gcaaacgata cgtgatttta cggctaccga tgccttcttt ttctagccaa
     2161 tcaattgcag cggtaatcgc ttcggcttta gctagtccgt tcaagaaatc ggagttaata
     2221 tgtggtccgt cgccagtgaa tgcttctttt gtcacgtcgc cgccttcaag aacaggacga
     2281 atattcaaac caaattgttg cgcaaattca aagtcacgtt catcgtgagc tggtacggcc
     2341 ataatcgcac ctgttccata ttgaatcaac acgtagtccg caatccaaat tggcacttct
     2401 tcgccgttga ttggattaat cgcataagct cctgtgaaga cacctgtttt atcttttgca
     2461 aggtcggttc tttccagttc gcttttaagt tctacttgtt ttttataagc ttcaactgct
     2521 tctttttgtt ctggtgttgt gattttttcg ataagttcgt gttctggtgc aaaaacggta
     2581 tatgttgcgc caaaaagtgt atctggacgt gttgtgaaaa cattaaacgt ttcatcgcta
     2641 tctttaattt taaaagtaac ttctgcgcct tctgaacgac caatccagtt acgttgcata
     2701 tctttaatat tttcaggcca atccactaga tcaagatcat ctagcaaacg atctgcgtac
     2761 gcggtgattt taagcatcca ttgacgcatt ggtttgcgga aaactgggaa gccaccgcgt
     2821 tcacttttgc catcgataac ttcttcattg gctaaaactg taccaagtgc cggacaccag
     2881 tttacagcga tttcggcttc ataagctaaa cctttttcat atagtttttc aaaaatccac
     2941 tgtgtccatt tataatattc aggatctgtt gtattgattt cacggtccca gtcgtaggaa
     3001 aaaccaagtg atttaatttg gcgagtaaag ttggcaatat tcagtgcggt aaattcttct
     3061 gggtcgttac cagtatcaat tgcatattgc tctgcaggaa gaccaaaagc atcccaaccg
     3121 attggatgaa ggacgttctt cccttgcatt cgtttcatac gagacaaaat atctgttgct
     3181 gtataacctt ctggatgtcc tacgtgaaga cctgctccag atgggtaagg gaacatatct
     3241 agtgcataga agttatcttt atttttatct tctgttgttt tgaaagtgtt atgttcactc
     3301 caatattgtt gccattttgg ttccattttt ttgtgattaa atgtcacttt actcatcctc
     3361 ttttccttaa aatatcgaat tttggctaca aaaaaatccc tacatcccaa cggcttatcg
     3421 ccatgggacg agagatgctt ctcccgcggt accacccaca ttagtgtttg accactcaac
     3481 ttatcaattc cttaacgcgg aaaacgggga tacacccaag ctccatggta agttcatccg
     3541 gattttgtga ctgacttgca ccaaccgtca gctctcttca catcaaaata tgcagattac
     3601 tactccaatt catcgctttt tcgcaaaatt cattagtctt attgtagctg aatttcattt
     3661 ttttagcaag cgctctgaag atttatctaa ctttcctaac aaaatgtgct aaaatgaatg
     3721 gagaatttca tttgaaggag tctaaaacta gtgaaacaaa cgaatccatt tgtatatagc
     3781 aatgataata aaagatatca tacatggaac tactgcttaa gagaagaatt tgggcaaaag
     3841 acatacaaag tggcgcttga tggcggcttt gattgtccca atcgtgacgg tacggtagcg
     3901 catggtggtt gtacattttg tagcgcggct ggttctgggg actttgctgg caaccgagcg
     3961 cttgatttaa aagtacaatt ccagcaagtg cgcgacaaga tgcaaacgaa atggaaagac
     4021 gggaaatgta tcgcttattt ccaagctttc acgaatacac atgcaccggt tgccgagtta
     4081 cgtgagaaat ttgaaactgt tttgaatgag ccgggtgtag ttgggctttc gattgcgaca
     4141 agaccggact gtttgccaga tgatgtggtg gaatatttag ctgagttgaa tgaacgtact
     4201 tatttatggt tggagcttgg attgcagtct gctcatgatg agactggccg cttaatcaac
     4261 cgggcgcatg attatgattg ttatctagaa ggagtgcaca aactgcaaaa gcacaatatc
     4321 cggatttgta cccacattat taacggtctt ccaaaagaaa caccagaaat gatgatggaa
     4381 acaacgcgga aagtagtcga aagtggcgtg gatggtatca aaatccattt gctccattta
     4441 ttaaaaggaa cgccaatggt agaagattat aaaaaaggtg acttagaatt tttaactcgg
     4501 gatggctatg taaacttagt cgctgatcaa ctagagatct taccgcctga gatggttatt
     4561 caccggatta ctggtgatgg tggcgtagat gatttaattg gccctgtttg gagtttaaat
     4621 aagtttgaag tgttgaatgc gattgatgca gaacttgttc gaagagatag ctggcaaggg
     4681 aaacactatc aacctgtgga agtgatttct gaatgaattt aagaggcatt ctccccttcg
     4741 ctcatgatac gctacgaaaa gtagttcgtc ctggtgatta tgtgattgac gccacttgtg
     4801 gtaatggaca cgatacgctt ttattagcgg aacttgttgg tattaatggg catgtacttg
     4861 gatttgatat tcaacaaatg gctgttgatg cgacgaaggc tcgtttagaa aatgcgggtg
     4921 tttcttcgca agtggaactc gtttgcgcta gccatgcacg tatccctgcg tacacatcca
     4981 gacctgttcg cgccgctatt tttaatcttg gatatttacc aggtggcgac aaagaaatta
     5041 caacaaccgc tgattcgacg ctagaaagca ttggtcattt aatgcagctg ctcgaagttg
     5101 gtggcgtcat tattctcgtt atatatcacg gccaccctgc tggaaaaatc gaaaaagatg
     5161 ctgttgtgac tttttgtgaa gcaatcccac aacaagattt ccacgtttta tcttatcaat
     5221 ttattaatca aaaaaatgat gccccattcg tcattatcat cgaaaaaaga aaacctagac
     5281 aggctaatta atagctttgt ctaggttttc ttttattttc caaaatcgta tttatctgct
     5341 acgtatacat cataccaaat catgaaaata acaactgtcc agattttacg actgtagtcg
     5401 aatttaccgg cacagtgatc gtctagtaat cctagaacgt attgtttgtt aattaaatga
     5461 tctgttggtg attctttaat gatgttttta acccaagcgt tcatttcgtc ttttaaccag
     5521 tgacgaattg gtactgggaa tcctagttta cggcggttaa gtacgtgttc tggtacaaat
     5581 gttgctgccg ctttacgtaa gatatatttg gttgttccat tggttgtttt cattgtatct
     5641 ggaatatttc ttgccacatt gtacacttct ttatcaagga aaggtacacg gacttccagc
     5701 gaattagcca tcgtcatgcg gtcagctttg agaagaatat cgccgcgaag ccacgtatga
     5761 atatcaatgt actgcattct ttctacagga tgataattcg ttgtttctgc ataaaatgga
     5821 tctgtaatgt tcgtatagtc atgaccagct tgatattttg gaagtaaaat ttgtttttct
     5881 ttttccgtga acattttggc gtttccgata tagcgttctt ccatcggagt ggttccacgt
     5941 tctaagaaac ttttaccacg cataccttct ggcataatgc gcgccacgct atttagcatt
     6001 gatttaaata cgcttggcat tttgttaaac atcgcaaggg aattcggttc gttataaatg
     6061 ttataaccac cgaaaagttc atctgcacct tcaccggaca atgcaaccgt tacttgtttg
     6121 cgcgcttctc ttgataagaa gtaaagcgga atagcagctg gatcagcaag tggatcatcc
     6181 atatgccaaa caatttttgg taattctttc atatattctt caggtgagat aacataacta
     6241 atgttttcta cgccaagttt gtctgctgtt tcttttgcga catcgatttc actgaaacca
     6301 tcgcgttcaa aaccaacaga gaatgttttg attgcaggat gatattcttt agcaatcgca
     6361 gcaataatcg atgaatcaat accaccagat aggaatgaac caactggtac atcagagcgc
     6421 atatgcattt ttacagaatc gtacattacg tcacgcactt ctttaatcca tgcgtcttct
     6481 gatttagtta ctggtgcaaa agatgctttc caataagtag taatttccat tggttgacca
     6541 attttcttcg tgaactgatg tcctggttct aaacgtttta catttttagt taaggaatct
     6601 ggttctggaa cgaattggta agtcatatag ttttgtaatg aaacttcatc caattctttt
     6661 tcttttaaag catgtagaat ggatttcttt tcagaaccca tgaacaattt gccatcttct
     6721 tctgcataga aaaatggttt aatgccaaat gggtcgcgtg cgccgtaaac aagttcttct
     6781 tgtttatccc aaataacgaa accaaacatc ccacgaagac gttctgctgt tttttctttg
     6841 tatttcgcat atgtagcgat aattacttcg gtatcacttt cggtttcaaa tgtcattcct
     6901 tcagcaacta attgctcacg gagttccaca tagttataaa cttctccatt aaaaataatc
     6961 cagtaacgtt cattttcata cgttaacggt tgatgaccgt tttctacatc aataatactt
     7021 aaacggcgga aaccaaactg cacgtgatca tctgtgaagt atccttcatc atctggccca
     7081 cggtgcgtaa tcatactgtt catttgtcta aaggtttctt tatcagcgcc agtaatttct
     7141 gtaatgcggt catgtacgca tcctacaaat ccacacatgg t
//
LOCUS       DASDXX010000138         7091 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.138, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000138 DASDXX010000000
VERSION     DASDXX010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7091
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.138"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            81..482
                     /locus_tag="U0280_002173"
     CDS             81..482
                     /locus_tag="U0280_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2272098.1"
                     /translation="MNFIIAAHGRYAQEVKNSCQMITGQTTNISAITFTEEMGVTDVL
                     DAYTAVYSPVNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLLIPLSLGESL
                     EEAMLGAKENIQFVEQKASYTIVSDDGEEED"
     gene            482..970
                     /locus_tag="U0280_002174"
     CDS             482..970
                     /locus_tag="U0280_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2272099.1"
                     /translation="MGSNGIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNE
                     MEKVALKTAVPAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVEL
                     PQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLSQKGIKITAQMVPSEDAVEFASLL
                     KK"
     gene            993..1796
                     /locus_tag="U0280_002175"
     CDS             993..1796
                     /locus_tag="U0280_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM2272100.1"
                     /translation="MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMG
                     DMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIVGTVFAVLSGQDAEFAIGLAIPV
                     GLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLT
                     FGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAY
                     LKVPMLGVALIGVALAIIYFKQNFKNPVAAGANGAALVGEENEDGEYED"
     gene            1771..2598
                     /locus_tag="U0280_002176"
     CDS             1771..2598
                     /locus_tag="U0280_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM2272101.1"
                     /translation="MKMANTKTEQDFEKVLKRRDLIAANFRWLFASQICWNYERMMST
                     GYLYSILPTLRKLYKTDDDLKDMMNMHNQFFNTNPMVGGLILGMDMAIEEREKKASKE
                     VVTGLKTGLMGPFAGVGDTIFGVILPTIFGSIAAYMGLQGNVTGVVIWVLVNILVVGA
                     RFTLLPLGYKQGAKLVTEFADRLNALTDAAILLGVTVVGALIPTVIKATVPFVYKSGK
                     VELKMQDMLDQIMPSLVPVLLVALIYALLGHKKMTSTKAILLVMVIAIILFNLKILG"
     gene            2626..3330
                     /locus_tag="U0280_002177"
     CDS             2626..3330
                     /locus_tag="U0280_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar isomerase domain-containing protein"
                     /protein_id="HEM2272102.1"
                     /translation="MGLTFFDKARELTEELEKTQAESIHQAAKLVADSIMNDGIIQAF
                     GSGHSYAAAIEVCGRAGGLIPSKVIMDPAGGYYESIEGVGSLLTHRLQAKPNDIFFLI
                     SNSGRNPMGIELAEWIKSQGCKLIVVTALDASQTAASRHSSGKLLYEFADVILDNRSV
                     QGDAALELDGLEGKVCGTSSFSAVLLLQQTIYEAVELMLEKGYTPPVYRSANIDGGYE
                     YNFAIEDKFADRIFHF"
     gene            3385..4026
                     /locus_tag="U0280_002178"
     CDS             3385..4026
                     /locus_tag="U0280_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM2272103.1"
                     /translation="MILKEACIENTTNLVNVIEAGANRVELCDNLAEGGTSVSYGIAK
                     HVVKICHEQNVSVMAMVRPRKGNFVYTKEEISVMIDDILMYKKIAVDGVVFGCITDSG
                     LLDKPAIIELLKAAAGLEVTFHMAFDELVDSEKLPAIDWLAEQGVTRILTHGGDGAKL
                     PEETFIQWRKYIDYAAGRIIILPGGGIKSHNMEWITKETGAAEIHGTDLFGER"
     gene            4231..6135
                     /locus_tag="U0280_002179"
     CDS             4231..6135
                     /locus_tag="U0280_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2272104.1"
                     /translation="MKYEQLAKDILKNVGGKENINSVFHCITRLRFKLKDENIANTKE
                     IEKLDGVISVIKSGGQYQVVIGNHVPDVFKAVLEVGGISAEGDEGSSAPATGNIFNRF
                     IDMISGVFTPVLGVLAATGMIKGFTAMFVAFGWITVTSGTYQLLYAIGDCLFYFFPIF
                     LGYTAMKKFGGNIFIGMAIGGALVYPTLAGITAGDPLYTLFAGTIFESPIHVTFLGIP
                     VILMSYASSVIPIIVATYFGSKVEKGFKKIIPDVIKTFVVPFCTLLIVVPITFIVIGP
                     IATWAGQLLGAGTIWVYNLSPIIAGLILGGFWQVFVIFGLHWGLVPVAINNLTVLGHD
                     PILAMTFGASFAQIGAVLAVFFKSRNKKIKSLSIPAFISGIFGVTEPAIYGVTLPLKK
                     PFIMSCIAGGIGGGIIGFAGSQTYIMGGLGIFGLPNFFKPGSGISGEFWWVVIAIVIS
                     FILGFILTYVVGFKDPADVVVEQSNTVEGETLIERETIPAPVVGEIVTLADVKDEAFS
                     SGALGKGVAIIPTVGRVVAPAAGTVTTIFPTGHAIGITTKDGAEVLIHIGMDTVQLEG
                     KFFTAHVKQGDVIEKGQLLTEFDIEGIKAAGYDVTTPVVVTNSNQYLDVMITDAKEAK
                     LEERLITLVI"
     gene            6217..>7091
                     /locus_tag="U0280_002180"
     CDS             6217..>7091
                     /locus_tag="U0280_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM2272105.1"
                     /translation="MLAKGDLIGIICCSDGRKKEDEKDLKRLKQALEKEFGLQVVFAK
                     TIFQIDDSPFSGTPEERAAELMKLYQNMDVKMIFDISGGDAANQVLPYLNFNIIKKAA
                     KPFIGYSDLTVILNAIFAKTKQPGFNYLLRNLAGEASEIQRVQFQKTFFENQIAINGK
                     SLNEFEWSLGEIVGGNIRCFLKLAGTEFMPDVSNKIILLESLGGKEAKIASYVAQLEQ
                     LGVFSKCLGIVVGEHTEAEKNGEYDRIGILYQQIGLKYKLPVFRTKEIGHSSEAKPCL
                     IGTKVNVSRETLTNF"
BASE COUNT         2245 a         1190 c         1586 g         2070 t
ORIGIN      
        1 aatatattga aagctacttg cggcataatt tttactctat tgaaattgaa aagaaaaaac
       61 aatagaaggg agttaattac ttgaatttta ttatcgcagc acatggccgg tacgcacagg
      121 aagtgaaaaa tagctgtcag atgattactg gccaaacaac taatatctca gcaattactt
      181 ttaccgaaga aatgggggtg acggatgtat tagacgccta cacggccgtt tattcacctg
      241 taaatgaaac cgctatcata gttgatattg ttggtggaac tccgtgtaat gcggctcaaa
      301 tgtttagtac aaaacatcca gaagttaaag ttgtatcagg tttgtcgcta ggattactca
      361 ttccacttag ccttggagaa agtttagagg aggcgatgct tggagcaaaa gaaaatattc
      421 aatttgtaga gcaaaaagcg agttatacga tagtaagtga tgatggggag gaagaggact
      481 gatgggaagc aacggaatta aacacgtacg cgtagatgag agactaattc acgggcaagt
      541 agcaacaatg tggaccaata ctataaaagc aacgcgaatc atgattgttg acgatgcggt
      601 tgtaaaaaat gaaatggaaa aagttgcctt aaaaaccgca gtaccggctg gtgtcaaact
      661 aagcattctg accgtaaaag gtgcagcaaa taatatcaat aatgataaat acgcagggca
      721 gcaagttttc ttaatcgtaa aatcacctca tgctcttcgc ggtttagtag atgcgggggt
      781 agaacttccc caaatcaatg ttggaaatat gtcgactaaa gcagggagcc gacaaatcaa
      841 aaaatcagtt agcgtgacgg atgaaaattt ggaagatttc gattacttgt ctcaaaaagg
      901 cattaaaatc actgcccaaa tggttccgag tgaagatgcg gttgaatttg caagtttatt
      961 aaaaaaataa gtgataagaa gggagaacta caatggattt agcagtttgg cagattatat
     1021 tgttagttat actcgcagct tgtaccattc ttgatgcttt aactttagta ataggactta
     1081 atttccctgt aataacagga acgcttgctg gaatcattat gggtgacatg gtgctcggac
     1141 ttgcgattgg ggcaacttta cagctgatgg ttctaggtgt tggtacatac ggcggagcgt
     1201 cgattcctga ctttacaacg ggagcaatcg tcggcacagt atttgccgtt ttatcaggtc
     1261 aggatgcgga atttgcgatt ggacttgcaa ttccagtggg acttttaatg gttcaattag
     1321 acattttagc aagatttacg aatacatttt tcttgcaccg cattgattct aatattgctt
     1381 cgggcaacat ttcggcggtt aaaaggaaca tttggtatgg ggcgctacca tgggctttat
     1441 cacgcgcggt tcccgtattt atcatgttga ctttcggaca aagcgtggtt gattttattc
     1501 taaatgaaat tccagagtgg ctaatgggcg gccttcgtgt agctggtgga attcttccgg
     1561 tagttggtat tgcgattctc cttcgttact taccaacaaa caaattcgtc gcttatttaa
     1621 ttatcggatt tgtagcagcg gcttatctaa aagtaccgat gctaggcgtg gcactaattg
     1681 gcgtggcttt ggcaatcatt tactttaaac aaaatttcaa aaatccagtg gctgccggag
     1741 caaatggcgc agcgctagtt ggggaggaga atgaagatgg cgaatacgaa gactgagcag
     1801 gattttgaaa aagtactcaa gagacgcgat ttaatagcag caaactttcg ttggttgttt
     1861 gccagccaaa tatgttggaa ctatgagcga atgatgtcga ctggttatct ttatagtatt
     1921 ttgccaacgc ttcggaaact ttataaaaca gacgatgatt taaaagatat gatgaatatg
     1981 cataaccaat ttttcaatac gaatcctatg gttggtggtt tgatcttagg aatggatatg
     2041 gcgattgaag agcgcgaaaa gaaagcgtca aaagaagtcg taactggttt gaaaacgggt
     2101 ttgatgggac catttgctgg tgttggtgat acgattttcg gggttatttt accgacgatt
     2161 tttggatcaa ttgccgcata tatgggactt caaggtaatg tgacaggtgt ggttatctgg
     2221 gtattagtta atattttggt tgtgggagca agattcacct tacttcctct aggatataag
     2281 caaggtgcaa aactagtgac ggaatttgcg gacagactta acgcgttaac cgatgcagcg
     2341 attctgctcg gggtcacggt cgtcggggca ttaataccaa ccgtaatcaa agcaactgtc
     2401 ccattcgttt ataaatcagg aaaagtagag ctcaaaatgc aagacatgct cgatcaaatc
     2461 atgccatcac tcgttccagt tttactcgtg gcgctaatct atgcactttt aggccacaaa
     2521 aaaatgacat ctacgaaggc tattttatta gtaatggtca ttgcgattat tttattcaac
     2581 ctaaaaattc taggttaaaa tataaaaatt ggaggaatag acaaaatggg tttaacattt
     2641 tttgacaaag cgcgtgaatt aacggaggaa ctagaaaaaa cacaggcgga aagtattcat
     2701 caagcagcaa aactggtggc agacagcatt atgaacgacg gaattattca agcatttggt
     2761 agtgggcact catatgcggc agctattgaa gtatgtggga gagcaggagg actaattcca
     2821 tcaaaagtta ttatggaccc agctggcggt tattatgaat cgattgaggg cgttggttcc
     2881 ttgcttactc atagattaca agcgaaaccg aatgatatat tcttccttat atctaattca
     2941 ggacgcaatc caatgggaat tgagcttgcg gaatggatta aatcacaggg ctgtaaatta
     3001 attgttgtaa cagcactcga tgcctcacaa acagcagctt caagacactc ttctggaaaa
     3061 ttgttgtacg agtttgcgga tgttatttta gacaatcgtt cagtccaagg ggatgcggca
     3121 cttgaattag atggattaga aggaaaagtt tgcggaacct cttcattctc agccgttctg
     3181 cttctccaac aaacaatcta tgaagcagta gaacttatgc ttgaaaaagg ctatacacca
     3241 ccagtttatc gtagtgcaaa tattgatggt ggctatgaat acaattttgc gattgaagac
     3301 aaattcgctg atcgtatttt ccacttctaa taaaaacgag cgcgaaaatg aacattattt
     3361 tcgcgctttt ttggaggata gaaaatgatt ttaaaagaag cctgtattga aaatacaact
     3421 aatctggtga acgttattga agctggagct aatcgagtgg agctttgtga taatctagcg
     3481 gagggcggaa cttctgtaag ttacgggatt gcgaaacatg tggtgaaaat ttgtcatgaa
     3541 caaaatgtaa gtgtaatggc aatggtccgt ccccgaaaag gcaattttgt ttatacaaaa
     3601 gaagaaattt cagttatgat tgatgacatt ttgatgtata agaaaatagc ggttgatggc
     3661 gtggtttttg gctgtattac ggattctgga ttgctagata aaccagccat aattgaatta
     3721 ttgaaagccg cagcaggtct ggaagtcact tttcatatgg cgtttgatga gttagtagac
     3781 tcggaaaaat tgccggcaat tgactggtta gctgagcaag gcgttacaag aattctcaca
     3841 cacggtggtg acggcgctaa acttcccgaa gaaactttta ttcaatggcg aaaatatatt
     3901 gattacgcag caggtcgaat cattatttta ccaggtggag gaattaaatc gcacaatatg
     3961 gaatggatta caaaagaaac aggagcagct gaaatacatg gcactgactt gtttggggag
     4021 cgctaaaact ccccaaataa atttatttaa aaaaaaagct tgcaaccgtt ttctttatat
     4081 gatatattta tctcatcaca aaggattgtt accaattcat tgggcaaaac ctaagctgat
     4141 ttgtaggaca cgtgtatgcg tggagtcctc gaatgagctt aggtttttct ttttgcccaa
     4201 aaaaccaaaa agaggaagga agtcgtcaaa atgaaatatg aacaattagc aaaagacatc
     4261 ttgaaaaatg tcggcggtaa agaaaatatc aatagtgttt tccattgtat taccagactt
     4321 cggtttaaac tgaaagatga gaatattgcg aacacaaaag aaattgaaaa gcttgatggc
     4381 gtaatctctg tcattaaaag tggtggtcaa taccaagtag ttatcggtaa ccacgtacca
     4441 gatgtattta aagcagtatt agaagttggc gggatttcag ctgaaggtga cgaaggaagt
     4501 agtgcaccag caacaggtaa tatcttcaac cgcttcatcg atatgatttc tggcgtattt
     4561 acaccagttc taggtgtatt agccgcaaca ggtatgatta aaggtttcac tgccatgttt
     4621 gtagcatttg gttggattac agttacttca ggtacgtacc aactacttta tgcaattggg
     4681 gattgtttat tctacttctt cccaatcttc ctaggttaca cagcaatgaa aaaattcggc
     4741 ggaaacatat ttatcgggat ggctataggt ggtgccttag tttatccaac acttgcaggt
     4801 attacagcag gtgacccact ttatacactt ttcgcaggaa caatttttga atctccaatt
     4861 cacgtaacat tcttaggaat tccagttatc ttgatgtctt atgcatcttc tgttattccg
     4921 attatcgtag caacatattt tggttccaaa gtagaaaaag gcttcaagaa aatcattcca
     4981 gatgtaatta aaactttcgt agttccattc tgtacattat taatcgtagt tccaatcact
     5041 ttcatcgtaa ttggcccaat tgctacatgg gctggtcaat tattaggagc aggaacaatt
     5101 tgggtttata acttaagtcc aattatcgcg ggtctaattt taggtggttt ctggcaagta
     5161 tttgttatct ttggacttca ctggggtctt gtaccagtgg caatcaacaa cttaactgtt
     5221 cttggacatg atccaatttt agcaatgaca tttggtgcat cttttgctca aatcggtgca
     5281 gtattagcag tattctttaa atctagaaac aaaaaaatca aatctcttag tatcccagca
     5341 tttatttccg gtatctttgg tgtaactgaa ccagcgattt acggtgttac tttaccactg
     5401 aaaaaaccat tcatcatgag ctgtatcgct ggtggtattg gtggcggaat cattggtttt
     5461 gcagggtctc aaacatatat catgggtgga cttggaatct tcggtcttcc taacttcttc
     5521 aaaccaggta gcggtatttc aggcgaattc tggtgggtag ttatcgcaat cgttatcagc
     5581 ttcatccttg gtttcatctt aacttatgta gtaggtttca aagatccagc tgatgtagta
     5641 gtagaacaat ctaacacagt agaaggcgaa actttaatcg aacgtgaaac aattccagct
     5701 ccagtagttg gcgaaatcgt aactttagca gacgtaaaag acgaagcatt ttcatccggt
     5761 gcacttggaa aaggtgttgc aatcatccca actgttggac gtgtagtagc tccagcagca
     5821 ggaacagtaa caactatctt cccaactggt catgcaatcg gtattacaac taaagacggt
     5881 gcagaagttt taatccacat cggtatggac accgttcaac ttgaaggtaa attcttcaca
     5941 gcacacgtga aacaaggcga cgtaatcgaa aaaggtcaat tactaactga atttgatatt
     6001 gaaggcatca aagctgctgg atatgacgtt acaactccag tagtagtaac aaactccaat
     6061 caatatttag acgtaatgat tacagatgca aaagaagcga aactagaaga acgtttaatc
     6121 acattagtaa tctaaaattc attaataaac agcttgggcg taaatctgct caagctgttt
     6181 ttatgttata ctgagggaaa aataggcggt gagcggatgt tagcaaaggg cgatttgata
     6241 gggataattt gttgttctga tggtcgaaaa aaagaagacg agaaggattt gaagcgcctt
     6301 aaacaagcct tagaaaagga atttggactt caggtggttt ttgcgaaaac tatttttcaa
     6361 atagatgatt cgccttttag tggtactcct gaggaacgag cagccgaatt aatgaaacta
     6421 tatcaaaata tggatgtaaa aatgattttt gacatttcag gaggggatgc ggctaatcaa
     6481 gtattaccat atcttaattt taacattata aaaaaagcag ccaaaccttt tatcggctat
     6541 agcgacttaa ccgtaatatt aaatgcaatt tttgcgaaga cgaagcagcc tggctttaat
     6601 tatttactgc gaaatttagc aggtgaagct agcgagatac aacgagtcca attccaaaaa
     6661 acatttttcg agaatcaaat tgcgataaat gggaaatccc ttaatgagtt tgaatggagc
     6721 ctgggtgaga tcgttggtgg aaatatccgc tgttttttaa aactagcagg aacagaattt
     6781 atgcctgacg tctcgaataa aataattttg ttagaaagtt taggtggaaa agaggcgaaa
     6841 attgcttctt atgtagcgca attagaacag ttaggtgtgt tttcgaaatg cttaggaata
     6901 gttgttgggg aacacactga ggctgagaag aacggggaat acgacagaat aggaatctta
     6961 tatcaacaga ttggattaaa atataagttg cctgtttttc gaactaagga aatcggtcat
     7021 agcagcgaag caaaaccatg tttaattggc acaaaagtta atgtttcacg tgaaacatta
     7081 acaaattttt a
//
LOCUS       DASDXX010000139         6971 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.139, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000139 DASDXX010000000
VERSION     DASDXX010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6971
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.139"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(123..431)
                     /locus_tag="U0280_002181"
     CDS             complement(123..431)
                     /locus_tag="U0280_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEM2272106.1"
                     /translation="MDEQLKENLMGALEQVIDPELGIDIVNIGLVYDVELDDDGLCTV
                     SMTLTTMGCPLAGILTEQVQMALSDIPEVKDTNVNLVWNPPWTKDRMSRYAKIALGIR
                     "
     gene            complement(496..1248)
                     /gene="yjfP"
                     /locus_tag="U0280_002182"
     CDS             complement(496..1248)
                     /gene="yjfP"
                     /locus_tag="U0280_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HEM2272107.1"
                     /translation="MIQVENEQIAGIPVLHISNSENADQMLPTIIFYHGFTSQKELYL
                     HYGYLLAQRGFRVVLPDAKLHGERLQGANPEDQATFFWDVIETNIIEFPLITNELIKA
                     GKTDANRIGVGGVSMGAITSLGLLGQYENIKVAVSLMGSAYYVDFAKELSKYALAQGL
                     TFPYDVDERILTLQKYDLTQNITKINNRPLLLWHGKKDDVVPFAYSEKLYQTLVEESL
                     ADNVQFIIDDNAKHKVSVEGMLQGVSFFEKFL"
     gene            1367..2212
                     /locus_tag="U0280_002183"
     CDS             1367..2212
                     /locus_tag="U0280_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2272108.1"
                     /translation="MNQPYELKEQTMSKKLIVLDLDGTTLRDDLTISSHTKKTLEKAR
                     MAGHEVMIATGRPYRISGSYYHELGLTTPIVNFNGAVYHHPRLTTFAEGYHHAIDLQV
                     VHELLDFSNGFSLDNIAAEVQDNVFLKERNNSVPETFHLGTENIVFGNIRDAIKSDAT
                     SLLFFGKIDQLDLISKHLDESLSGVISHHTWGASAWPAVEIIKFGIHKAIGVQAAAKT
                     LGFDRKDIIAFGDETNDLQMLDYAGVGVAMGNAAESVKNVANVVTASNQDDGIALYLE
                     ENLNL"
     gene            complement(2290..3192)
                     /locus_tag="U0280_002184"
     CDS             complement(2290..3192)
                     /locus_tag="U0280_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2272109.1"
                     /translation="MSSKIVYKEYAKKTAIAIIAALLNAIGMNFFLIPAQVYAAGLNG
                     VAQLGSDMLRDSMNISISTGLLVLLLNIPVAILGWLKVGKSFTVFSFLTVAFMSFFLI
                     VIPEVQVSSDILLNAIFGALIASVGIGLALKFGISTGGLDIVAMYITIKTGRSFGKYF
                     LLLNGVIIIVAGFAYDWTFALYTLISLYVQSRVIDIIHTRHQKLTVMIMTQHSETVIK
                     AIHENMVRGITVVDAMGGYSKEDVAMLIMVITRYELYDITHIVGEFDSKAFINVMETS
                     SVFGDFRSEADQKLAMAMYKNKMM"
     gene            complement(3276..3638)
                     /locus_tag="U0280_002185"
     CDS             complement(3276..3638)
                     /locus_tag="U0280_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YisL family protein"
                     /protein_id="HEM2272110.1"
                     /translation="MWGYIHLISWVAIVVLTVTALLIYSKSTKSFTMLQMINRVFYIL
                     VILSGIMMVKYSIEQSWILAIFKILMGIIVIGVVEMLLSYRKQQKPTGMFLMIFVIVV
                     VITISLGFYLSGGYPLFN"
     gene            complement(3658..4506)
                     /locus_tag="U0280_002186"
     CDS             complement(3658..4506)
                     /locus_tag="U0280_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEM2272111.1"
                     /translation="MKWLSYQHEGDFNYGILTPENKIIPAQTIFSNPPATLLDFIKEK
                     PLVPELKGIKGDIDLAEVEIQVPITPPNNIIAIGKNYYNHVLEMGSKEDVPEHILVFT
                     KSANSLLPHNGKIELHQNLTSQLDYEGELAIIIGEKVRDLSEQDALSAIFGFTILNDV
                     TARDLQKKHKQFYLGKSLDASCPMGPYVLENNGSKEVVFHIETKVNGEIRQSDSTDKC
                     IFNLARIISDLSKGHTLLPGDVIATGTPSGVGKGMTPPTFLQAGDVVEITIDKIGTLT
                     NKVRKS"
     gene            complement(4507..>6971)
                     /gene="addA"
                     /locus_tag="U0280_002187"
     CDS             complement(4507..>6971)
                     /gene="addA"
                     /locus_tag="U0280_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HEM2272112.1"
                     /translation="VQETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKY
                     QTYQQDGNGSGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTLGAS
                     FPETTDMATELLLIDMKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDNKFPIFD
                     KKMKQNRPIQYRDIVILARAMTSAPDMEEAMKVQDIPFYANNNSGYFETTEVATMIAL
                     MKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYKDTTVSETAD
                     KMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRA
                     NQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVI
                     VSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMIAEE
                     MRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWIG
                     NATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQ
                     PIPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQK
                     VSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKEDLEQLLQTMREKDILTEAQ
                     LKAINIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGV
                     VDSMIEEEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKV
                     DAAYLYFFDGQHICQINTKEGF"
BASE COUNT         2109 a         1393 c         1059 g         2410 t
ORIGIN      
        1 acattttatt atctttataa tcacttatca tttcataatt catcgtttta atcctctatt
       61 cagtcatata aaaataacag gtataacgca aaatacgtcc tacctgctta tttttattta
      121 attcaacgta taccaagcgc tatttttgca tagcgtgaca tacgatcttt agtccaaggt
      181 ggattccaaa caagatttac atttgtatct ttcacttctg gaatatcact aagtgccatt
      241 tgtacttgct cagtcaaaat accagcaagt ggacatccca ttgttgtaag cgtcattgat
      301 actgtgcaaa ggccgtcatc atctaattca acatcgtata caagaccaat attcacaata
      361 tcaattccaa gttctggatc gataacttgt tctagtgcgc ccattaaatt ttctttcagt
      421 tgctcatcca tgaagcatat gcctcctttt tgccattttg tacatttatt gtatcatata
      481 tgagaatgat tttcattata agaatttctc gaaaaagctt acaccttgta gcattccttc
      541 gaccgaaact ttgtgtttcg cattgtcgtc gatgataaat tgcacattat ctgccaagct
      601 ttcttctact aatgtttggt ataacttttc gctgtacgca aaaggtacca catcgtcttt
      661 tttgccatgc caaagtaaca atggtcggtt atttattttg gtgatatttt gggtcaaatc
      721 atatttttgt aaagttaaaa ttcgctcatc cacgtcatac gggaaagtta acccttgcgc
      781 caatgcatat ttagataact ccttagcaaa atcaacgtaa taagcacttc ccattaaact
      841 gaccgctact ttaatatttt catattgccc aagaaggcca agcgaagtaa tagctcccat
      901 ggaaactccg ccaactccaa tacgattagc atccgttttt ccagctttaa ttaattcatt
      961 agtaattaga gggaattcta taatatttgt ctcaataaca tcccaaaaga atgtagcctg
     1021 atcttccgga ttcgctcctt gtagacgctc accatgcaac tttgcatccg gcaaaactac
     1081 tcgaaagcca cgctgcgcaa gtagataacc ataatgtaaa tataattctt tttgagaagt
     1141 aaatccatga taaaaaataa tcgttggtaa catttgatca gcattttcac tattactaat
     1201 atgtaaaact ggtattcccg caatttgttc attttccact tgaatcattg tgaagcctca
     1261 tttctattga gtttattaag ctactgtaaa ggtcggaatc atttacaaat ttgtgataaa
     1321 cgtctatcat tgatgtgtgc ccttatttta gcatgaaggg gcagctttga accaaccata
     1381 tgaattaaag gagcaaacta tgtctaaaaa attaatcgta ctagatcttg atggaacaac
     1441 acttagagat gatttaacta tctcctccca tacaaaaaaa actttagaaa aagcccgcat
     1501 ggccggtcac gaagtaatga ttgcaacggg acgcccatat cgaataagtg gctcttatta
     1561 ccatgaactc ggattaacaa cgccgattgt aaatttcaac ggtgccgtct atcaccatcc
     1621 tagacttact accttcgctg agggctatca tcatgccatt gatttacaag ttgttcatga
     1681 gttactcgat ttttcaaacg gcttttcatt agataatatc gcagcagagg tgcaagataa
     1741 tgtcttctta aaagaacgaa acaacagcgt tcctgaaaca ttccacttag gcactgaaaa
     1801 tattgtcttt ggaaacatcc gtgatgctat taaatcagat gctacttctt tactgttttt
     1861 tggaaaaatt gaccaacttg atttaattag caaacacttg gatgaatctc tttccggcgt
     1921 tatttctcac catacatggg gagcatctgc ttggccagcc gttgaaatta ttaaattcgg
     1981 tattcataaa gctattggcg tgcaagcagc ggctaaaaca ctcggctttg atcgtaaaga
     2041 tatcattgca tttggcgatg aaacgaatga tttacaaatg cttgattacg ctggtgttgg
     2101 ggttgctatg ggaaatgctg ccgagtctgt taaaaatgtg gcaaacgtgg taactgcttc
     2161 taatcaagat gatggtatag cactctattt agaagaaaat ttaaacttat aataaaaagc
     2221 tgcaagtaag gtcttacaaa agttaggaat actaattttt gattcaagag ccattacttt
     2281 gcagcttttt tacatcattt tatttttata catcgccatt gctaattttt gatctgcttc
     2341 tgaacgaaaa tcaccgaata cgcttgaggt ctccataaca ttaataaatg ctttagagtc
     2401 aaactcgcca acaatgtgcg taatatcata tagttcataa cgcgtaatca ccataatcag
     2461 cattgctacg tcttcttttg aataaccacc catcgcatcc acaactgtaa ttcctcgtac
     2521 catgttctca tggattgctt tgattactgt ttcagagtgt tgtgtcatta tcatgacagt
     2581 cagcttctga tgtcttgtat gaataatgtc aataactcta ctctgaacat ataaagaaat
     2641 gagcgtgtat agcgcaaatg tccaatcata tgcaaaacct gcaacaatta taataactcc
     2701 atttaaaagc aagaaatatt tcccaaaaga acgccctgtt ttaatagtga tatacattgc
     2761 tactatatct aatccgccag tagaaatacc gaatttcaaa gccagaccaa tacctacaga
     2821 tgcaattaaa gccccaaaaa tcgcattaag caaaatatca ctagatactt gcacctctgg
     2881 gataacaatc aagaaaaagg acataaaagc aactgttaaa aaactaaaaa cagtaaatga
     2941 ttttcctact tttaaccacc ctaaaatcgc cactggaata tttaataaca gaacaagtag
     3001 tcctgttgaa atagaaatat tcattgaatc tcgtaacatg tctgaaccta gttgtgcaac
     3061 cccatttaat ccagctgcat aaacttgtgc tggtattaaa aagaagttca tgcctattgc
     3121 gtttaaaagt gctgctatta ttgcaatggc ggttttttta gcatactctt tatatactat
     3181 ttttgaactc attttcttct ctcctttttt ggccctaaca taacatacca actttctaga
     3241 gaaaagagaa gtctttttta ttattttttt gatttttaat taaataatgg atatccgcct
     3301 gataaataga agcctaatga gatggtaatc actacgacaa taacaaaaat catcaaaaac
     3361 attcctgttg gtttttgttg tttcctgtaa ctaagtagca tctccactac accaattaca
     3421 atgattccca tcagaatttt aaatattgcc agaatccaac tttgctctat gctgtatttg
     3481 accatcataa ttccactcaa aataaccaga atataaaaaa ctcgattgat catttgcaac
     3541 attgtaaaac tttttgtcga tttcgaataa atgagtaaag ctgtaactgt tagtacaaca
     3601 atagccaccc atgaaatcaa atgaatataa ccccacataa tacatccctc tttcttatta
     3661 agattttctt actttgttag tcagtgtccc aattttatca atagtaattt cgacaacatc
     3721 tccagcttgc agaaaagttg gaggtgtcat gcctttcccc acaccacttg gagttcctgt
     3781 agctatcaca tccccaggca acaatgtatg cccttttgat aaatcagaaa taatcctagc
     3841 taaattaaat atacatttat ctgtagagtc agactgtctt atttcaccgt taaccttagt
     3901 ttcaatatga aaaacaactt ctttacttcc attgttttcc agcacataag gtcccattgg
     3961 acaactggca tcaagacttt tcccaaggta aaattgttta tgttttttct gaagatcccg
     4021 agctgttaca tcatttaaaa tagtaaatcc aaatatggcg gataatgcat cttgctcgga
     4081 taaatctctt accttttctc ctataattat tgcgagttcg ccttcataat ctaattgact
     4141 agttaggttt tgatgtagct caattttgcc attatgcggc aataaactat tagcactttt
     4201 tgtaaataca aggatatgtt ctggaacgtc ttctttgctc cccatctcta gcacatgatt
     4261 ataataattt ttcccaattg caataatatt atttggtggg gtgataggaa cttggatttc
     4321 tacttcagct aaatcaatat cccctttgat tccttttagt tcagggacaa gcggcttttc
     4381 tttgataaag tctaaaagag tagcaggtgg attcgaaaaa attgtttgtg cagggataat
     4441 tttattttca ggtgttaaaa tgccataatt aaaatcgccc tcatgctgat aactcaacca
     4501 tttcatttaa aaaccttcct ttgtgtttat ttgacatata tgttgtccat cgaagaaata
     4561 taaataagct gcatcaactt ttttaccact tatcgcttga atcgcttttg cataaagttt
     4621 gatttgaata tgatatcgtt ctttcattat tttttcagca gcttcccaat tagaatacct
     4681 accctctatt ttatctgttt tatagtcaat caaagtaatt gtttcttctt cttcaatcat
     4741 gctatctaca acaccttgga taagtacacg ttcgtctata tcaacttttt cgtataactc
     4801 agatacagga agtaaataac taaatggcac ttcacgtttt actaaatctt ttttctgcaa
     4861 catagttttt cctaattgcg attcaaaaaa gcctagcact tgtttaatat tgattgcttt
     4921 aagttgtgct tctgttagta tatccttttc acgcattgtt tgtaaaagct gttccaaatc
     4981 ttcctttgtc ggttgatgtt ctaaagaaac tgcttgcatt agcgtatgca ttgccgtgcc
     5041 aatttctgtt gcagataatt tattttgctg taaaaatttg ggtctgtcta atgaaacttt
     5101 ttgaaattct tttaaaagtg tagtatcact ccaactatct tgcaaagaaa attgccgctt
     5161 gagctctgtt accgactgtt tagcacgaat ttctgttgcc tcttcatttt ggtactcata
     5221 gttcatatat cgctgaattt catccttata agggcttttg acaggtattg gttgatgttc
     5281 ttttatattg tccaaccaat taaccgtttc tgtcttttcc aattcattag ttagaaacat
     5341 ttccttggtt tttatttcaa tctgtagttt catatctgtc ggaagcgttt ggatcatttc
     5401 ctcacacaat aattctttaa aattaggatg tctaattgtg gcgtttccta tccaatccaa
     5461 ataacatttc gctttagctc ttgtggatgc aggtaaaata gtctcttttt cttttgcaac
     5521 ttgtaaccaa ttcttacttg ttttttcaaa atcaggcacc gttgctgtca aaattaactt
     5581 ctcttctgca cgagtaagag caacgtaaag aactcgcatc tcttccgcga tcatttctcg
     5641 agattttttt tgtttcattg cttgctgcat aattgttgga taaacaatca ttttctctat
     5701 atctcgataa ttagatgcaa aaccgtaatc cttatctaaa agtgttttgc tataaatatc
     5761 acgcatatta aatttcctgc ttaacccaga gacaatgacc actggaaatt ctaatccttt
     5821 acttgcatgg attgtcatca tacgaacgac atcttctttt tcaccaagtg tttttgcggt
     5881 tcctaaatca tcgcctcgaa cttctaagcg ttcgacaaaa cggacaaagc gaaacaaccc
     5941 acgaaaagat gttttttcgt attgattagc tcggtcatat aacgcacgta aattagcctg
     6001 gcgttgtttg ccacccggta atccaccaac aaattcataa aaattagttt cttgatagat
     6061 ttgccaaatt aatgatgtta agttttcccg gatagataac tcacgccaat tatttaactg
     6121 ttgaataaaa tcactcattt tatctgcagt ttccgaaacg gttgtatctt tgtatgttaa
     6181 caatgcatca tagaaataac cattcttttt cgccatacga acttgtccta gctcttcttc
     6241 gtttaaaccg attatgggtg accgtaaaac agcagcgagc ggaatatctt ggtaagggtt
     6301 gtcaatcact ttcatcagtg caatcatcgt agctacttct gttgtttcaa aataaccaga
     6361 attgttattc gcgtaaaaag ggatatcctg aactttcatt gcttcttcca tatctggagc
     6421 gcttgtcatc gccctagcta aaataactat atctcgatat tgaatcggtc tgttttgttt
     6481 cattttttta tcaaatatag gaaacttatt gtctatcatt tctttaattt tcattgcaat
     6541 tgcacgtgat tccacttgat ttttttgtaa ttcttgaggt gacaattcat cttcagtttc
     6601 actctccaca gacttcatat caattagcag tagttccgtc gccatatcag tcgtttcagg
     6661 aaaacttgcg cctaaagtta attccgccgc tgcatcatag tcaatttcag caatgtgctt
     6721 gtccatcaat tgatgaaata taaaattagt cgcatctaaa acttcttttc tacttctaaa
     6781 gttttgcgac aaatcaatac gtattccgct tccatttcca tcttgttggt aagtttgata
     6841 tttcgtcata aatagcgttg gttctgctaa acggaaccga taaatagact gctttacatc
     6901 cccaaccatg aataaattcc cttgttcctc acctgaatta gttactagtc gtaggatagt
     6961 ttcttgcacc a
//
LOCUS       DASDXX010000140         6956 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.140, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000140 DASDXX010000000
VERSION     DASDXX010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6956
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.140"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..558
                     /locus_tag="U0280_002188"
     CDS             <1..558
                     /locus_tag="U0280_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HEM2272113.1"
                     /translation="MAEYKAKNPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFT
                     DLAPDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYT
                     EHGPEALLKDKKAILIHGSGGIYSAGPTSSFTHGEPYLRTILQFIGINVVPSIFVEGI
                     DHNPSKEAEIVAAAKAVAQESAAEF"
     gene            752..2128
                     /locus_tag="U0280_002189"
     CDS             752..2128
                     /locus_tag="U0280_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2272114.1"
                     /translation="MEEQKEELQRGLKNRHIQLIAIGGAIGTGLFLGAGKSIHLAGPS
                     IMLVYLIIGAILFFVMRALGELLIHNPTTGSFTEFAEQFIGPWAGFITGWTYWFCWIV
                     TGIAEITAVGMYVKFWVPDLPQWIPALACVLILLLFNLATVKAFGEIEFWFAIIKVVV
                     IIALIVIGFVLVFIGYKHGTSTASFSNLVDYGGFFPNGIAGFLLAFQMATFSFVGIEL
                     VGVTAGEADDPERTLPKAINNIPIRILIFYIGALLVLMSIYPWSNIDPNTSPFVSVFT
                     MIGIPAAAGIINFVVLTAAMSSCNSGIFSTSRMLYTLSAEGKAPKKMHHLSSNGVPAT
                     ALITSTACLLIGVFLNYFLPEQVFILVTSIATICFIWVWGVILVAHLRFRHKHPEIAE
                     KSKFKMPLSPLMNWVSLIFFGGLLVILGFAADTRIALFVTPVWFLILGIAYQVLKASN
                     RKTKIRHN"
     gene            2393..6823
                     /locus_tag="U0280_002190"
     CDS             2393..6823
                     /locus_tag="U0280_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase"
                     /protein_id="HEM2272115.1"
                     /translation="MIHAGLDVGSTTAKAVALNDQGDILFQTYRRHYSDIKKVTLEIM
                     QDMQKKCGMTEMTFKITGSSGLAISKFLNVPFVQEVIACTEAVEQVIPETDVVIELGG
                     EDAKIIYFSGGIEQRMNNACAGGTGAFIDQIATLLQTDPTGLNELAQNANTIYPIASR
                     CGVFAKTDVQPLLNEGARKEDIAASIFQSVVTQTISGLACGRPIRGKVAFLGGPLTFL
                     DQLRYRFTETLKMKDSDIIAPQNAEYFIALGTAFTGLNDVPLKVDDMIYRLSNMDMTT
                     MATDTVILPALFEKQEDLEAFRARHNQMKAKRAKLEDYEGDAYLGIDAGSTTTKLILM
                     SQTNEILYSFYSSNNGNPLQSVIDATSDLYEILPEKVRVAQSGITGYGESLIKAALKI
                     DVGEIETVAHYRAAREFLPDVDFILDIGGQDMKCMKIKKGALDSLMLNEACSAGCGSF
                     LETFAQTLNLSIEEFAARALEAKAPVDLGSRCTVFMNSKVKQVQKEGVSMEDLSAGLA
                     YSVVKNALQKVIKLRSPKDIGEKVIVQGGTFYNESVLRAFELLTGREVVRPDIAGMMG
                     AYGAALIAREHYETGEVTEMLVLEKLREFSAETSQSRCNLCSNTCQLTVTRFGDDRMF
                     VSGNRCERGERVETKRNLLPNLYAYKLKRTFDYKSLKKSESTRGTIGIPRALNVFENY
                     PLWHTILTNLGFRVVLSSKSSKNLYDKGIETIASEAVCFPAKLTHGHIMDLIKKKADR
                     IFYPSVVYEKPEFGEATNNFNCPVVAGYPEVIRVNVDALEEKNIPMISPFLTLDNEKA
                     LIEQMSLAFPEVPAADMEKAVQAGLEEAELCRKDIQAEGEAALTYIKKNKIKGIVLAG
                     HPYHIDPEVNHGIPELITMNGMAVLTEDSISHLGEMDHKLRVENQWKYHARLYRAASF
                     TAKSEDLEFVQLTSFGCGLDAITTDMCQEIIEGHNKVYTLLKIDEINNLGAARIRVRS
                     LKAAMEEREKNNVKPGIMPKPKERPLFTKEMKKTYTILAPQLAPTHFEMLEAACKVGG
                     YNLEVLPAVTPRAVDEGLRYVNNDACYPAILTIGQMMDALKHGDYDVNNLAVLMTQTG
                     GGCRATNYISMLKKALGEAGLDHIPVISLNANGLEKQPGFKMTPKVLVRFLAGISLGD
                     ALDRMLYRTRPYEVEPGSANKMFRHYLDAGRALMENYSFGAYKKLANEMVRAFDNLPI
                     TNEVKPRVGVVGEILVKFHPGANNNIVDVIEDEGGEAVVPDLTDFILYCCYDDHFAAN
                     TFGRSKVKSFAKQSVAIPLINQFRKPVTDALKKSERFEAPASIESIAEKASQLLSLGN
                     KMGEGWFLTGEMFELLDSNVPNIACLQPFACLPNHITGRGMIKGLKKMYPEANIMSID
                     YDAGSSSVNQLNRIKLMLSIARKQLETTEVITEKETNTRFNPREKILGKAKQVRESAP
                     VEMIGNKVKQARDADPVGAIAQKVKHVASSSSEHVQTDND"
BASE COUNT         2226 a         1230 c         1499 g         2001 t
ORIGIN      
        1 atggccgaat ataaagccaa aaatccttct gatacagtag aagaattagt tttatataat
       61 acagaagtac cactattaga tttagaatta atgacagctg gtagagaatt acaagctggc
      121 aaagctttca ctgatttagc gccagatgta caaaaaaaat taaatgctta taatgcgctt
      181 acggaacaat tcttagcagc agacaaatat gtttttgtgt tcccgctttg gaaccttgga
      241 atcccgccat tattaaaagc ttatattgat acttttgtta ttgctggaaa atctttccgt
      301 tatactgagc acggtccaga agcactttta aaagataaaa aagcaatctt aatccatggt
      361 agtggcggta tttattctgc tgggccaaca agttcattta ctcacggaga accttattta
      421 cgtactattt tacaatttat cggtattaat gttgtaccat caatctttgt agaaggaatt
      481 gatcacaatc cgagcaaaga agcggaaatc gttgcagctg ctaaagcggt agcgcaggaa
      541 agtgctgcag aattctaaaa agtttgtgaa aaaattattt cttgctaatg atattaagac
      601 agtattatca actgtctaga ccaataaaaa cacataaaaa gattgctaat ccctttataa
      661 attggtaaag tagagaagta gattgatcga taaagtgctg aattaactcg gcactttatt
      721 ctttttaatt actcgaaagg gatgaatttg gatggaagag caaaaagaag aattgcaaag
      781 agggctgaaa aatagacaca ttcagttaat cgcgattggc ggagcaattg gtacagggct
      841 ttttctagga gcagggaagt caattcattt agccggacct tctatcatgt tagtttactt
      901 aattattggg gctattttat tctttgttat gagagctttg ggtgaattat taatacataa
      961 cccaacaaca ggatctttta cagaattcgc agagcaattt attggaccat gggctggctt
     1021 tattactggt tggacatatt ggttctgctg gattgtgaca ggtattgcag aaattacagc
     1081 agttggcatg tacgtaaaat tttgggtgcc agacttaccg caatggattc cagcacttgc
     1141 atgtgttttg atacttctat tgtttaactt agcaactgtt aaagcttttg gtgaaatcga
     1201 attttggttt gcgattatta aagtggttgt tattattgcc ttaattgtta ttggatttgt
     1261 actcgtattt attggttaca aacatggcac aagtacagct tcattttcta atttagtaga
     1321 ttatggtggc tttttcccga atggaattgc cgggttcttg ctagcattcc aaatggcgac
     1381 attttctttt gttggaattg agcttgttgg ggttactgca ggagaagcgg atgatccaga
     1441 gcgtacactt ccaaaagcca ttaataatat tccgattcgg attttaatct tttatattgg
     1501 tgcgctactc gtattaatgt cgatttatcc gtggagcaat attgatccaa acacaagccc
     1561 attcgtaagc gtctttacga tgattgggat tcctgcagct gccggtatta ttaactttgt
     1621 ggtgttaacg gctgctatgt cttcttgtaa tagtgggatt ttcagtacaa gccggatgct
     1681 ttatactctt tctgcagaag gaaaagcacc gaaaaaaatg catcatttga gctctaatgg
     1741 tgttccagca acagcgttaa tcacatctac agcatgttta cttattggtg tgtttttaaa
     1801 ttatttctta ccagaacaag tatttatttt agtaacaagt atcgcgacga tttgctttat
     1861 ctgggtttgg ggcgttattt tagtggcgca tttacgtttt cgtcataaac atccagaaat
     1921 cgcagaaaaa agtaaattca aaatgccatt atctccttta atgaactggg ttagcttaat
     1981 tttcttcgga ggattactag ttatcctcgg ttttgcagca gatacaagaa tcgcactttt
     2041 cgtcacacca gtatggttct tgattttagg tatcgcttat caagttttaa aagcttccaa
     2101 ccgaaagaca aaaattcgcc ataattaata actgagcaag cattcgctaa acggagctat
     2161 tttagggaat gcttgctttt tttcggcatg aaaatgctcc gcgaaattct ttacaaatga
     2221 aaaaaatcgt gtagaatgag aggtgtttag agcattttgt cgtattttcg catatcgagt
     2281 gagtactcac tcatttttag aaataactat ttatgtgaag caacgtacaa atgacagata
     2341 atatgtgaag ttacatacat attaagtagt gcgtaatgaa agggatgaga aaatgattca
     2401 tgcagggtta gatgtgggat caacaacagc aaaggccgta gcacttaatg accaggggga
     2461 tattttattt caaacctaca gaagacatta ttcagacatt aaaaaagtta cattagaaat
     2521 catgcaggat atgcaaaaaa aatgtggcat gacagaaatg acattcaaaa ttacgggatc
     2581 atccggatta gcgatttcta aattcttgaa tgtacctttt gtgcaggaag taattgcttg
     2641 tacggaagca gtggagcaag taattccaga gacagacgta gtaatcgagc tgggcgggga
     2701 agatgcgaag attatttatt tcagtggtgg gattgagcaa cgaatgaata atgcctgcgc
     2761 gggtggaact ggtgctttta ttgaccaaat cgcgacactg cttcaaacag atccaacagg
     2821 tttaaacgaa ctggcacaaa atgcgaatac gatttatccg attgcttcca gatgtggcgt
     2881 gttcgccaaa acagatgtgc aaccactact taatgaaggg gctagaaaag aagatattgc
     2941 cgcttcaatt ttccaaagtg tggtgacaca aacgattagt gggcttgctt gtggacgtcc
     3001 aatccgcgga aaagtagcgt ttcttggagg accacttact ttccttgatc aattgcgcta
     3061 tcgttttaca gaaacattga agatgaaaga tagtgatatt attgcgcctc aaaacgcgga
     3121 atattttatt gcacttggaa cagcttttac tggattaaat gatgtacctt taaaagtaga
     3181 tgatatgatt tatcgacttt ccaatatgga tatgaccacg atggcgacgg atacggtcat
     3241 tttaccagca ctttttgaaa agcaagaaga cttagaagct tttcgtgcgc gtcataatca
     3301 aatgaaagcc aaacgagcaa aactggaaga ttatgaaggg gatgcttatt taggcattga
     3361 tgcaggatca actacgacca aattaatctt aatgagccaa accaatgaaa ttctttactc
     3421 gttttattct agtaataatg ggaatccgct ccaatcagtt attgacgcaa cgagtgattt
     3481 atatgaaatt ttaccggaaa aagttcgagt tgcgcagtct ggaattacag gctacggcga
     3541 gtcgcttatt aaagccgcac taaaaattga tgttggcgaa attgaaacag tggcgcatta
     3601 tcgtgctgct cgtgaatttt taccggatgt tgattttatt ttagacattg gcggacaaga
     3661 tatgaaatgt atgaaaatta aaaaaggcgc actggatagc ttgatgctta atgaagcttg
     3721 ctcggccggg tgtggttcgt ttcttgaaac gtttgcgcaa acacttaatt tatccattga
     3781 agagtttgcg gctcgggcgc tggaagcaaa agctcctgta gacctaggtt cccgttgtac
     3841 cgttttcatg aattccaaag tgaaacaagt gcaaaaagaa ggcgtgagca tggaagattt
     3901 atctgcgggt cttgcttatt cagtcgtaaa aaacgcgtta caaaaagtaa tcaaactccg
     3961 cagtccgaaa gacattggtg aaaaagtaat cgttcaaggt ggaacttttt acaacgaatc
     4021 agtcttgcgt gcctttgaac tgttaactgg acgtgaagta gttcgaccgg atatagccgg
     4081 aatgatggga gcatacgggg ccgctttaat tgcccgagaa cattacgaaa ctggcgaagt
     4141 aacggaaatg ctcgtactag aaaaattacg tgaatttagc gcggaaactt cgcagtcgcg
     4201 ctgtaacctt tgtagtaaca catgtcagct tacagtgaca agatttggcg atgaccggat
     4261 gtttgttagt ggaaatcgtt gtgaacgcgg ggaacgtgtc gaaacgaagc gtaatttact
     4321 gcccaattta tatgcgtata aactaaaacg tacctttgat tacaaatcgc tgaaaaaatc
     4381 agaatcaact agagggacca ttggtattcc acgcgcattg aacgtttttg aaaattatcc
     4441 actatggcat acgattttaa cgaacttagg tttccgagtg gttttatcat cgaaatcatc
     4501 caaaaaccta tacgacaaag gtatcgaaac gattgcctcc gaagcagttt gtttcccagc
     4561 caaattaaca cacggtcata ttatggattt aatcaagaaa aaagcggatc gcattttcta
     4621 cccatctgtc gtttacgaaa aaccggaatt cggtgaagca acgaataact ttaactgtcc
     4681 tgttgtggct ggttacccag aagttattcg tgtcaatgtg gatgctttgg aagagaaaaa
     4741 tattccaatg atcagtccgt ttttaacttt agataatgaa aaagcattaa tcgaacaaat
     4801 gagtctcgct ttcccggaag tcccagccgc ggatatggaa aaagcagtcc aagcagggct
     4861 agaggaagca gaactttgcc gcaaagacat tcaagcagaa ggagaagcgg cacttactta
     4921 cattaagaaa aataaaatca aagggattgt tcttgcaggg catccatacc atattgatcc
     4981 agaagtaaac cacggaattc cagaactcat tacaatgaac ggcatggcgg ttcttaccga
     5041 agattcgatt tctcatcttg gagaaatgga ccataaactt cgggttgaaa atcagtggaa
     5101 atatcacgca agactgtatc gtgcagccag ctttactgct aaaagtgaag atttagaatt
     5161 tgtgcaattg acgtcatttg gttgtgggct tgatgcaatt acgacggata tgtgccaaga
     5221 aatcattgaa gggcataaca aagtatacac actactaaaa atcgatgaaa ttaacaacct
     5281 tggtgccgca cgtatccgcg ttcgttcctt aaaagcagcc atggaagaac gtgagaaaaa
     5341 taacgtgaaa ccagggatta tgccgaaacc aaaagaacgt ccattattta caaaggaaat
     5401 gaagaaaacg tatactattt tagcgccaca gctagctccg acccattttg aaatgttaga
     5461 agcagcttgt aaagtgggcg gttataactt ggaagtatta ccagcagtta caccacgcgc
     5521 agtggatgag ggcttacgtt acgtcaataa cgacgcttgt tatccagcaa ttttaacgat
     5581 tggacaaatg atggatgcgc tgaaacacgg cgattatgat gtaaataatt tagcggtatt
     5641 gatgacgcaa acaggtggtg gatgtcgggc taccaactat atttcgatgc tgaaaaaagc
     5701 tctcggagaa gctggcctag atcatatccc agttatttcg cttaatgcca acggtttaga
     5761 aaaacaacca ggctttaaaa tgacgccaaa agttcttgtt cgtttcctag ccggaattag
     5821 cttaggagat gcgctcgacc ggatgcttta tcgtactaga ccatatgaag tggaaccagg
     5881 gagcgcgaat aaaatgttcc gtcattatct cgatgctggt cgtgcgttaa tggaaaatta
     5941 ctcttttgga gcatataaaa aattagcaaa tgaaatggtt cgcgcctttg acaacttacc
     6001 aataacaaat gaagtgaagc ctagagttgg tgtcgttgga gaaattctcg tgaaattcca
     6061 tccgggtgct aataacaata ttgttgatgt tattgaagac gagggcggag aagcggttgt
     6121 tcccgattta acagatttca ttttatattg ttgttatgac gatcactttg cagccaatac
     6181 atttggtcgt tccaaagtaa aatcattcgc gaaacaaagc gttgcgattc cacttattaa
     6241 tcaattccgc aaaccagtaa ctgatgcgct gaagaaaagt gaacgctttg aagcaccggc
     6301 gagtatcgaa tctatcgctg aaaaagcgag tcaattacta tcactcggaa ataaaatggg
     6361 tgagggctgg ttcttaacag gggaaatgtt tgaattactc gatagtaacg taccaaatat
     6421 cgcgtgttta caaccatttg cttgcttgcc aaaccatatt actggtcgag gcatgattaa
     6481 agggcttaaa aaaatgtatc cagaagctaa catcatgtcc attgactacg atgccggctc
     6541 aagctctgtg aaccaactaa atcgaatcaa attaatgctc tccatcgcaa gaaaacaact
     6601 agaaacgaca gaagtaatca ccgagaaaga aacaaacaca cgattcaacc caagagaaaa
     6661 aatccttggt aaagcaaaac aagtacgaga aagcgcccca gtcgaaatga ttggaaacaa
     6721 agtaaaacaa gcgcgggatg cagacccagt tggcgcgata gctcagaaag tgaaacatgt
     6781 tgcatcatca agtagcgagc acgtccaaac ggataatgat taatgtaaag ccacctataa
     6841 aataggtggc ttttttagat aaaattcaca aaaatgacac gaaatagaac tatatccgca
     6901 ataatagtat ttttgttaat acattggctt gttgttttgt atattataat tattct
//
LOCUS       DASDXX010000141         6871 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.141, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000141 DASDXX010000000
VERSION     DASDXX010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6871
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.141"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(33..1139)
                     /locus_tag="U0280_002191"
     CDS             complement(33..1139)
                     /locus_tag="U0280_002191"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEM2272116.1"
                     /translation="MVTGWHRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAY
                     GHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNH
                     ISLTVFREDWLEELTLEAPLRIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEG
                     IYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRF
                     GISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVA
                     TLPIGYADGLIRHYSGFHVLVDGELAPIIGRVCMDQTIIKLPREFQTGSKVTIIGTDH
                     GNTITADDAAHYLDTINYEVTCLLNERIPRKYIH"
     gene            complement(1158..1514)
                     /locus_tag="U0280_002192"
     CDS             complement(1158..1514)
                     /locus_tag="U0280_002192"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEM2272117.1"
                     /translation="MIKGIGLDMIDLERVKQVVEKNPRFIERVLTEKEIKQFEKYEGN
                     RKIEFLAGRFAAKEAYAKANGTGFGKHLSFTDVEILQVEDGRPHVTLPVKSGENVFVS
                     ITHTARSAAAQVIIEI"
     gene            complement(1516..2895)
                     /locus_tag="U0280_002193"
     CDS             complement(1516..2895)
                     /locus_tag="U0280_002193"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEM2272118.1"
                     /translation="MKHIVIIGGGLSGLAAAYELQKTHPNYTWELVEKDKKLGGKFET
                     VKRDGFLIEKGPDSFLARKPAGVGLVKDLGLEDKLIANATGRSYIYHQKALHPIPEGS
                     VMGIPTDKEALLASTLVSEIGKARALQEPTMERNNQEQDQALGEFFEARFGKELVKTI
                     IEPLLSGIYAGDIYKMSLRATFPQFEQAVKKYGNLMDGLKESSMQTTGTKATIGAFRT
                     LEGGLDALPKAIAAALPKENLHTAKQATNITKKNSSYEISFVDGDKMEADGVIIAATH
                     DALIHLLAEKTTEPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACT
                     WVQKKWPHMVPENKMLLRGFVGKAGETWLEQASDEAIVSAVLRDYAEMMDLHAAPLFY
                     EVSRMKSAMPQYLVNHQDRLKQLKKNIKADYPGVYFAGMSYEGVGIPDCIAGAQTAAK
                     ELVDYLEEV"
     gene            complement(3045..4520)
                     /locus_tag="U0280_002194"
     CDS             complement(3045..4520)
                     /locus_tag="U0280_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM2272119.1"
                     /translation="MFEERRLHPIALIKEIITNVRRNIVPIVVGLFSVFRAINSNGYL
                     PDWAVYLIIVIVILLILTPAVLKYITYKYTLEDQGIRIKYGLIFRKNTYIPYERIQTV
                     QKKQWFFFIPFNVCQILIETAGGNGKAEADLVAVPVGVVDELNDLRDGKKRDIQEAVP
                     ETEETTVEVAEAPEKTVMLQTKQLILMAVTSGGVFGTLLIVLAFMQQFREVIPTDWME
                     AQAEELWKMGIIVLIVLIVLILLVLWGISIVTTLFKYFQFKLMKYPNSLVVEKGLLER
                     NHTTISLSRIQGITIIESPLRQMLGLVAVKVTTAGNSGDEKLSGDILLLPIMKKALAL
                     KTLKEMLPDYLFEIEKMERAPKASLRRFLQIYLIWTIIPAAVASILFFPLGLISIILP
                     VLAGIKGVTSYRATGVFTDKHTLLVQSRPIFSKLTHIIRKERIQGLSLRQSIWMEKGG
                     SRHLNVWLKSGSTSAEAYVRYINQDLAIKVYNWYSPSKTIN"
     gene            complement(4513..4995)
                     /locus_tag="U0280_002195"
     CDS             complement(4513..4995)
                     /locus_tag="U0280_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM2272120.1"
                     /translation="MELDNLEKKLPEKIKTVWRQTEGIAVLTFLLCSVVAAIILYYAG
                     ASVWWSAIGFGLTVLYAAFIYLFIIPFRFARWSYQIKPDEMEIQHGIIFRSRVLIPMI
                     RIQHVETEQGPLLRRQKLVSLSITTAAKTHKIEAVNESESDELRHHILELVKVAKEDV
                     "
     gene            5128..5604
                     /locus_tag="U0280_002196"
     CDS             5128..5604
                     /locus_tag="U0280_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272121.1"
                     /translation="MKKKGYILLIIALLSLTLNWLPEIAHAQKEATGTTYTTATTNEL
                     MDMFLPHSIQNPYIETTKNSAELMFVTEEAATITTETNNQTQSIAGSTENHQFALANL
                     QPGNNLVTITATMTDGTSESKTITINLPEKPKKNSKSFHDHSKNQQVTHRKKGHLL"
     gene            complement(5650..>6871)
                     /locus_tag="U0280_002197"
     CDS             complement(5650..>6871)
                     /locus_tag="U0280_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2272122.1"
                     /translation="RVAYDFVITQPVASGETMTLTIPNQLKLINYGGFPLMDSQGNTI
                     ANATIDQATGTITLTFTDYVNTHTDLSGSLYYNATFNSKNIQTDQVNPIAFPVKNSTQ
                     TINAFISKVNTGGGTGSPTIVFKQGRMDDKDLSILHWTVTLNNALTPIDNAVYTDTLG
                     SGQNLLGSATIKYRDANKKVITTNIQPITLDADRNFELSIGTLNNQSVVITYDTKITT
                     KQKSYTNKATLSGDNLEAVSRNATVNDYGSGGQGTGTPPAPPVKEEPPFIPAEKQLIE
                     KTVETDFGPLEIVKDSEQNGKIKVIYKVKDGDTLPGVANKFDVSVAEIKDWNNLTSDT
                     LQAGQKLQLTIEKTLLSKITIPPVQKVTSTTSVDGVVKATGVLPHTGDSNPFIPFVTG
                     VSLVALGFTFGRRN"
BASE COUNT         1874 a         1420 c         1292 g         2285 t
ORIGIN      
        1 gcttcttcta aaaaaagcac gaatattacc ttctaatgga tgtattttct aggtatacgc
       61 tcatttaaca gacaagtaac ctcataattt attgtatcta aatagtgagc ggcatcatct
      121 gctgttatcg tgtttccatg gtccgtgcca attatcgtta cttttgaacc agtttgaaat
      181 tcgcgcggta gttttatgat ggtttgatcc atacaaacgc gtcctataat tggggctagt
      241 tccccgtcta ctaaaacatg aaatccgctg taatgacgaa tcaacccatc tgcatagcca
      301 atcggtaacg ttgcaaccca ttctcgttct gttgcagtgt aggttgctcc gtagctaaca
      361 ctatcacctg gtgcgagttc tttcacatga accatttcgg tatagagtgc aagggctggt
      421 ttaagctcaa atggtaagct agttttgatt tcggtggaag gggttaaccc gtacatcgat
      481 ataccaaagc gaatcgcatc aaacccgatt tgtggctgta ataatgaagc agctgaattg
      541 gctgtatgaa catacgttgg gcgatttttt aaactcgtta aaatggtttg gaacttagct
      601 aattgttgtt cgaaataact agtttcaagt tggtcggctg tcgcaaaatg cgtgtagata
      661 ccttctagtt gtagttgatt gtctttagca attgtcgttt cgattcgcct tgcttcgtcg
      721 gttgtacgaa tcccaagacg ccccataccg ctatctactt ttaaatgaat gcgaagtggc
      781 gcttctaagg ttagttcctc tagccagtcc tctctaaaaa cagtgaggga aatgtggttt
      841 ttggccgcta aatttgcatc ttcttttcta gttgcgccaa gtacaagaat aaagtcatct
      901 tgaaacccag cttctctaag agccaacgcc tcatctaaaa tggcaacaca gaaacctttt
      961 gctccagctt ctttcgctgt tctagcaact tcgataattc cgtgaccata tgcattagct
     1021 ttgactactg cccataaatc cacattttct ggaagtttat tttgttcatt ttttatattt
     1081 tcgcgaattg ctgcgcggtc tatctcaatc catgtaggac gatgccagcc tgtcaccatg
     1141 attgttcact ttcctttcta aatttcaatt atcacttgag ctgcggctga tctagctgtg
     1201 tgggtaatgc tcacaaaaac gttttcacct gatttgactg gtaaagtaac atggggtcgc
     1261 ccatcttcta cttgcaaaat ttctacatcc gtaaaactta aatgtttgcc aaaaccagtt
     1321 ccattcgcct tagcatatgc ttcttttgct gcaaaacgcc cagctaaaaa ttcgattttg
     1381 cgattacctt cgtatttttc aaattgctta atttcttttt ctgttaaaac acgttcgata
     1441 aagcgtggat tcttttccac gacttgtttt acacgttcta aatcaatcat atctagtccg
     1501 attcctttaa tcatgttaca cctcttccaa gtaatctact aattccttag cggctgtttg
     1561 agctcctgcg atgcaatcag gaatacccac accttcgtag ctcattcctg caaaataaac
     1621 ccctgggtaa tctgctttga tgttcttttt caattgtttt agtcggtcct ggtgattaac
     1681 taagtattga ggcattgcgg atttcattcg gcttacttca taaaaaagtg gcgcggcgtg
     1741 aaggtccatc atttccgcat aatctctcaa aacagctgaa acgattgctt catcacttgc
     1801 ttgctctaac caagtttctc ccgctttccc aacaaagcct cgtagtaaca ttttattttc
     1861 tggtaccata tgcggccatt ttttctgcac ccatgtacaa gcagtggttt tatatggggc
     1921 ggttctggca actagatagc ctgttccatc tggtaaaatc ggtacatctt gttcattgta
     1981 tgctaatgag acagttgcga gagtcgtaag cggttgtccc gcgaatggtt ctgtcgtttt
     2041 ttctgctaat aaatgaatta gcgcatcatg tgtggcagcg ataatgacgc catctgcctc
     2101 cattttatcg ccatctacaa aagaaatttc gtaagagcta ttctttttcg taatgttcgt
     2161 tgcttgtttt gctgtatgca aattttcttt tggaagtgcg gcggcaatgg cttttggtaa
     2221 cgcatctagc ccgccttcta atgttcgaaa agcaccaata gtagcttttg tccctgtcgt
     2281 ttgcatgcta ctttctttta agccatccat caaattccca tattttttaa ctgcttgttc
     2341 gaattgtgga aaagtggcgc gtaaactcat tttgtatata tctccggcat aaattcctga
     2401 taaaagtggt tcgataattg ttttgactaa ttctttaccg aatcgcgctt caaagaattc
     2461 gccaagtgct tgatcttgtt cttgattatt tcgttccatt gttggttctt gaagtgcgcg
     2521 agctttccca atttcggata cgagtgtact agctagcaat gcttctttat ctgttggaat
     2581 tcccatcact gagccttctg gaatcggatg aagtgctttt tggtggtaaa tgtaggatct
     2641 tcctgtcgcg ttcgcaatca gtttatcttc gagtcctaaa tccttcacta agcctacacc
     2701 agctggtttt cttgctaaaa aggagtctgg tcctttttca attaaaaatc cgtcccgttt
     2761 aaccgtttca aatttcccgc ctagtttttt gtctttttct actaattccc acgtataatt
     2821 cggatgtgtt ttttgtagtt catacgctgc tgcaagccct gataagccgc ctccgataat
     2881 gactatatgt ttcactactt aaccaatcct ctctatctac tctttcgttt attctatcta
     2941 ttttaccaga tttcagggta attgaacaaa aaataaaaga acagccattt ccaaaattac
     3001 agtcgctatt gatcagcgat ttttaggaaa tgacgtgttc ttttttaatt tattgttttg
     3061 gacgggctgt accaattgta taccttgata gctaagtctt gattgatata gcgaacataa
     3121 gcttcagcgc ttgtacttcc tgatttaagc caaacattta agtgccttga tccgcctttt
     3181 tccatccaaa tgctttgtct taagcttaaa ccttgaattc gctctttgcg gataatgtgc
     3241 gttaacttgg agaaaattgg gcgtgactgg acaaggagtg tgtgcttatc tgtgaaaact
     3301 ccggttgcgc ggtagctggt tacccctttt atccctgcta aaactggcaa aataatacta
     3361 attaagccga gtgggaaaaa taaaatactt gctactgcgg ctgggataat tgtccagatc
     3421 aagtaaatct gcaaaaatct gcgcaaactg gcttttggag cacgttccat tttttctatt
     3481 tcaaataaat aatctggtag catttctttt aatgttttta aagccaacgc ttttttcata
     3541 ataggcaaaa gtaaaatgtc gccggatagt ttttcatcac ctgagttccc tgcagtagta
     3601 actttgaccg ctactaagcc gagcatttgt cgtagtggtg attcaataat ggtgattcct
     3661 tgaatacgcg aaagtgaaat ggttgtatgg tttcgttcta atagtccttt ttctacaaca
     3721 agtgaattgg gatatttcat caatttgaac tggaaatact tgaacaatgt cgtcacaatc
     3781 gatattcccc ataataccaa aagaatcaag acaattaata caattagtac gataatgccc
     3841 attttccata actcttctgc ttgagcttcc atccagtctg tcgggatgac ttctcggaat
     3901 tgttgcatga atgctagaac gataaggagc gtcccgaaaa cgccgccgga tgttactgcc
     3961 attaaaataa gctgttttgt ttgtagcatg accgtttttt ctggtgcttc tgccacttct
     4021 actgtggttt cctcggtttc tggcacggct tcttggatgt ctctcttttt accgtcgcgt
     4081 aaatcattta attcgtctac tacgccaact gggacagcga ctaaatcggc ttctgctttc
     4141 ccgttaccgc cagctgtttc gattaaaatt tggcagacat taaatgggat aaagaaaaac
     4201 cattgtttct tttggacggt ttggatgcgc tcgtaaggta tgtatgtatt ttttcgaaaa
     4261 atcaaaccgt atttgatgcg aatcccttgg tcttcgaggg tgtatttgta ggttatgtat
     4321 tttaagactg cgggggttaa aatgagtaat ataacgatga caataattaa atatacagcc
     4381 cagtccggca aataaccgtt actattaatg gcgcggaaaa cggaaaataa accgacgacg
     4441 ataggaacaa tattgcgtct tacgttcgta ataatttctt taatgagggc aatcggatgg
     4501 aggcgtcttt cttcaaacat cttctttcgc caccttcaca agttcaagaa tatgatgtct
     4561 aagttcatct gattcagact cgtttaccgc ttcaatctta tgtgtttttg cagcagttgt
     4621 aatcgataaa gaaacgagtt tttgtcttct aagtagcgga ccttgctccg tttccacgtg
     4681 ttgaatgcga atcatcggaa ttaagacacg acttctaaaa ataatgccgt gctgaatttc
     4741 catttcgtct ggtttaatct ggtagctcca acgtgcaaaa cgaaacggaa taatgaataa
     4801 gtaaataaag gcagcataaa gtaccgttaa tccaaaaccg atcgcactcc accacaccga
     4861 agctcctgca taatacaaaa tgattgccgc tacaaccgaa caaagtagaa aagtaagaac
     4921 agcaattccc tccgtttgcc gccaaactgt tttaattttc tccggtaatt tcttttctaa
     4981 attatcaagt tccattgctc tactcctttt ttcttttatc ttacgttaaa aacagctaaa
     5041 ttggtagcga ttttttaaat ctatcatgtt ttattcatag tttgttcata tttctttttt
     5101 ataatataac aagaagaggt gagaaggatg aagaaaaaag gttatattct attaataata
     5161 gcgcttttgt cgctaacgtt aaactggctt ccggagattg cccacgcgca aaaagaagca
     5221 acaggaacta cttatacaac tgcaaccaca aacgaattaa tggatatgtt tctacctcac
     5281 tccatccaaa atccttatat tgaaacgaca aaaaatagcg cggaattaat gtttgtaaca
     5341 gaggaagccg ccacgattac caccgaaaca aataatcaaa cgcaatcaat tgctggtagc
     5401 accgaaaacc atcaatttgc attagctaat ttgcaacctg gaaataattt agtgacaatc
     5461 acagcgacaa tgacagatgg gactagtgag agcaaaacaa tcaccataaa ccttccagag
     5521 aaaccaaaga aaaactctaa atcgtttcat gatcattcta aaaaccaaca agtgacgcat
     5581 cgaaaaaaag ggcacttatt ataataaaaa aggaagcact cattcataag aagagtgctt
     5641 cctttttcgt taatttctac gtccaaatgt aaaaccaagt gctactaaac ttacccctgt
     5701 tacaaatggg ataaacgggt tcgaatcccc agtatgaggt aaaacccctg ttgcttttac
     5761 gacaccgtct acgcttgttg tgctagtcac tttttgcaca ggtggaatgg tgattttgga
     5821 taagagtgtt ttttcaatcg ttagttgtaa tttttgaccg gcttgtaaag tatccgatgt
     5881 gagattgttc cagtctttaa tttctgcaac agagacatca aacttattag ctactccagg
     5941 taatgtatcg ccatctttca ctttatagat gactttaatt ttaccatttt gttcggaatc
     6001 tttaacgatt tcaagtggac caaaatctgt ttcgactgtt ttttcaatca gttgcttttc
     6061 agccggaata aatggtggtt cttctttaac cggtggcgct ggcggggttc ctgttccttg
     6121 tccaccgcta ccgtaatcat tcactgtcgc atttctcgaa acagcctcta ggttatcacc
     6181 ggatagcgtt gctttattcg tatagctttt ttgtttcgtc gtaattttcg tatcataagt
     6241 aatgacaaca gattgattat ttaacgttcc aatagataat tcaaaattgc gatctgcatc
     6301 cagcgtaatt ggctggatat tggtagttat cacttttttg ttggcatcgc ggtatttgat
     6361 tgttgcactt ccaagcagat tttgccctga gccaagcgta tccgtgtaaa cggcattatc
     6421 aataggtgtc agcgcattat ttaaagtaac agtccaatgt aaaatactca agtctttatc
     6481 atccattcgc ccttgcttaa aaacgattgt tggtgagccc gtaccgccac cagtattaac
     6541 tttgctaata aaggcgttta tcgtttgggt cgaatttttc acaggaaaag caattggatt
     6601 tacttgatct gtttgaatat ttttgctgtt aaaagttgcg ttataataaa ggctgccact
     6661 taaatctgta tgtgtattta catagtcggt aaaagttaat gtaatggttc ccgttgcttg
     6721 atcaatggtt gcatttgcga tcgtgtttcc ttgcgaatcc ataagaggga atccgccata
     6781 attaattaat tttagctgat taggaatagt aagcgtcatt gtttctccgc ttgcaactgg
     6841 ctgtgtaata acgaaatcat acgccactcg c
//
LOCUS       DASDXX010000142         6817 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.142, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000142 DASDXX010000000
VERSION     DASDXX010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6817
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.142"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            328..2406
                     /gene="topA"
                     /locus_tag="U0280_002198"
     CDS             328..2406
                     /gene="topA"
                     /locus_tag="U0280_002198"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEM2272123.1"
                     /translation="MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGV
                     DTEHDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQ
                     SDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKK
                     GLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKL
                     STADDVKEVMSAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMM
                     LAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSD
                     KNAKGAQDAHEAIRPTSAMRSPQEVKEFLTRDQLRLYRLIWERFIASQMTPAVLDTMR
                     VDLDNNGVNFRANGSKIKFHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQR
                     QHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEI
                     VNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEME
                     KIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEK
                     GHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCT
                     NCDYKESTQQ"
     gene            2469..3773
                     /gene="trmFO"
                     /locus_tag="U0280_002199"
     CDS             2469..3773
                     /gene="trmFO"
                     /locus_tag="U0280_002199"
                     /EC_number="2.1.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FADH(2)-oxidizing
                     methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-
                     methyltransferase TrmFO"
                     /protein_id="HEM2272124.1"
                     /translation="MEKSVNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHT
                     DKFAELVCTNSLRANGLTNAVGVIKEEMRILDSIIIEAADKASVPAGGALAVDRHEFS
                     GYITDKVKNHPLVTVHTEEVTTIPEGPTIIATGPLTSPALADEIKQLTGEEYLYFYDA
                     AAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMSEEEFNAFYEALVTAETAALKEFEK
                     EVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKRPYAVLQLRQDDAAGTLYNM
                     VGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLF
                     FAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPAETAIGSLAHYITSASKKSF
                     QPMNVNFGLFPELETKIRAKQERNEKLAERALNAIKRVAEQL"
     gene            4056..4958
                     /gene="xerC"
                     /locus_tag="U0280_002200"
     CDS             4056..4958
                     /gene="xerC"
                     /locus_tag="U0280_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEM2272125.1"
                     /translation="MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQS
                     ITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVS
                     HAKNQLRLPKFFYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLP
                     DLDTSYQAILIRGKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYG
                     DPLTTRGIRYCLSKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLS
                     STQIYTHVTKEHLKSTYMKHHPRA"
     gene            4979..5518
                     /gene="hslV"
                     /locus_tag="U0280_002201"
     CDS             4979..5518
                     /gene="hslV"
                     /locus_tag="U0280_002201"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEM2272126.1"
                     /translation="MELHATTIFAVQHDGKAAMAGDGQVTLGESVVMKHTAKKVRRLF
                     HDKVIAGFAGSVADAFTLFEKFEAKLNEYNGNLERASVELAQQWRSDSVLRKLEAMLI
                     VMDKDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKRHNGGQMEAKDIARHAL
                     EIASEICVFTNDHITVEEL"
     gene            5532..>6817
                     /gene="hslU"
                     /locus_tag="U0280_002202"
     CDS             5532..>6817
                     /gene="hslU"
                     /locus_tag="U0280_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEM2272127.1"
                     /translation="MTNITLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQ
                     LMDESIRDEIIPKNILMIGPTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDV
                     ESMVRDLVEVSVRLVKEEKMQLVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALF
                     GGMNQPDESPEEEVDQELKNKRSQIEWRLQNGELDDEIVTVEVKEQQNPMLDMMRGAG
                     MDQMNGMQDALSGMFPAKKKKRKVTVREAKKILFEDEASKLIDADELAAEGIHRAEQM
                     GMIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAG
                     AFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDL
                     IFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLL"
BASE COUNT         2421 a         1117 c         1465 g         1814 t
ORIGIN      
        1 gttagttatg aattcgaaca atataataga agaatttatt caaattaagc cataaatata
       61 ctgaaattat cttttttaag tgatttgact tgcatttcct gattttttga gataagtttg
      121 ctaaagaaag ctgatataaa acatcaaaaa atggactttt tcataaaagc cattgacaaa
      181 cccagtagga agggctaata tttactactg aattatgtga acaatcagca ttgaaaactt
      241 attgaacgcg aggctaagac tgtaatagga ttaagacaac gagtaaagcc cgtgtattga
      301 cccaaatcag ggaggaatat aatagatatg gcagattatt tagtgattgt agagtcacct
      361 gcaaaagcaa aaacaattga aaagtattta ggtaagaaat ttaaagtgaa agcctcaatg
      421 ggacatgttc gtgacttacc taagagtcaa atgggtgtag acacagagca tgactacgaa
      481 cctcgttata ttacgattcg cggaaaaggc cctgttttaa aagaattaaa acaagcagcc
      541 aaaaaagcga aaaaagtcta tctcgcagcc gatccagacc gcgaaggaga agcaattgca
      601 tggcacttag ccaatagcct agagttagat caatcagaca aactacgtgt agtatttaac
      661 gaaataacga aggaagcagt aaaagaatct ttcaaaacac cacgtaaaat tgacatggat
      721 ttagtcaatg cgcaacaagc acgcagaatt ttggaccgtt tagttggata taatatcagt
      781 cctattctat ggaaaaaagt gaagaaaggt ttgagtgcgg ggcgtgttca gtctatcgca
      841 cttcgaatca ttattgatag agaaaaagaa atcaataatt tcaaacctga agaatactgg
      901 acaattgacg gtaacttcct taaagggaag aaaaaattcc aagccaattt ttatggtgta
      961 aatggtaaaa agaaaaagct ttccactgca gatgatgtaa aagaagtaat gtctgcaata
     1021 aaaggaaaat catttgacgt aacagatgta acgaaaaaag aaagacttag aaatccagct
     1081 gcaccattca ctacttcaag tttgcaacaa gaagcagctc gaaaactaaa ttatcgtaca
     1141 agaaaaacaa tgatgcttgc ccaacaattg tatgaaggaa ttacacttgg taaacaaggg
     1201 acagtcggct taattacgta tatgcgtaca gactccactc gtattgccga ttccgctata
     1261 ctagaagcaa gcaattacat taaagaaacc tatggacccg aattttctcg taatcataaa
     1321 cgttcagata aaaatgctaa aggtgctcaa gatgcccatg aagcaatcag acctacaagt
     1381 gcaatgagaa gtcctcaaga agtaaaagaa tttttaacac gggaccaact tcgcttatat
     1441 cgtttgattt gggaaagatt tatcgcgagc caaatgacgc cagcagttct tgatacaatg
     1501 cgcgttgact tagacaacaa tggcgtgaac ttcagagcaa atggatctaa aattaaattt
     1561 cacggcttca tgaaagtcta tgtagaaagt aacgatgata atacggaaga aaaagaaaat
     1621 atcttaccag atttgaaaaa aggagataag gtacagtccg aatcactcga acaacggcaa
     1681 catttcacac agccacctcc acgttacaca gaagctagat tagtaaaaac gctcgaagaa
     1741 attggtattg gtcgaccatc aacttattcg ccgacactcg acacaattca gcgcagaaat
     1801 tatgtttctt taacgaataa acgctttatt ccaactgaat taggtgaaat cgttaatgaa
     1861 atgattgaag aatatttccc agaaatttta gatgtcaaat tcactgccaa catggaaagt
     1921 gagctcgatg aagtagagca cggagaagtc gaatgggtga aagtcattga tgaattttat
     1981 aaacgatttg aaccaaatgt tataaaagca gatgcagaaa tggaaaaaat cgagattaaa
     2041 gatgaaccag ccggaattga ctgtgatctt tgtggagctc caatggttta caaaatgggt
     2101 aaatacggta agttcctagc ttgtagcaga tttcctgatt gtcgtaatac gaaagcaatc
     2161 gtgaaagaaa tcggcgttac gtgtccgaaa tgtgagaaag gacatgtaat agaaagaaaa
     2221 agtaagaaaa agcgtatttt ttacggttgt gatcgttatc cagattgtga ctatgtatca
     2281 tgggataaac cggtcgaacg ggcttgtccg aaatgtgaga aacgagcatt agtcgagaag
     2341 aaattgaaaa aaggtgtaca agtacaatgt acaaattgtg attacaaaga atcaacccaa
     2401 caataatcgg aaaatggcaa cacttggatc gttcttgtgt tgccattgtt gcgcgaggag
     2461 gcggacaaat ggaaaagagt gttaatgtaa ttggagcagg tttagcagga agtgaagcag
     2521 catggcagtt agtaaaacgt ggggtaaagg tggatttata cgaaatgaga ccggtaaaac
     2581 aaactccggc acatcataca gataaatttg cagagctagt atgtacgaat tccttgcgag
     2641 ctaacggtct aacgaatgct gtaggagtta ttaaagaaga aatgcggata cttgattcta
     2701 ttatcattga agccgctgac aaagcatctg taccagctgg aggggcactt gcggttgatc
     2761 gacatgaatt ttctggttat attacagaca aggtgaaaaa tcatccactc gtaacagtgc
     2821 atacggaaga agtaactact attccagaag gtccaacaat tattgcgacc ggtccactta
     2881 caagtcctgc gcttgctgat gaaattaaac aattaacagg ggaagagtat ctttactttt
     2941 atgatgcagc agcaccaata attgaaaaag atagcattga tatggataaa gtttatttga
     3001 aatcccgcta tgataaagga gaagctgctt acttaaactg cccgatgtca gaagaagaat
     3061 tcaatgcttt ttatgaagca ttagtaacgg cagaaacggc tgctttaaaa gaatttgaaa
     3121 aagaagtgtt tttcgaagga tgtatgccaa tcgaagtaat ggcaaaacgc ggaattaaaa
     3181 cgatgttatt tggtccatta aagcccgttg gtttggaaga tccaaaaact gggaaaagac
     3241 cttatgctgt gttgcaactt agacaagatg acgcagcggg aacactttac aacatggtag
     3301 gtttccaaac gcaccttaaa tggggtgagc aaaaacgtgt tttcggaatg attccaggac
     3361 ttgaaaatgc tgaaatcgta cgttatggtg taatgcatcg taacacattt attaactcgc
     3421 caactgtgct tgaaccaact taccaactga aaacacgcaa tgatttgttc tttgctggac
     3481 aaatgacagg tgtagaggga tatgttgaat ccgcggctag tggacttgcg gcggggatta
     3541 atgcggccaa ttttgtagag gaaaaagaac tagtggtttt cccggcagaa acggcgattg
     3601 gtagtctagc ccattacatt acgagtgcta gtaaaaaatc gttccaacca atgaatgtta
     3661 attttggact cttcccagag cttgaaacaa aaattcgtgc aaaacaagaa cgtaatgaaa
     3721 aattagctga aagagcgcta aatgcaataa aaagggttgc agaacaacta taaaaacact
     3781 ataataattg aggactattc tttgctgttc ttttcatcac gatggctact ttggtatttc
     3841 aagagagttg atagtggtgg aaagacagtt tttctttccg ataaatggtc tagacagatt
     3901 ttgttaataa atgttggttt tttcacaaaa gttaagtgtt ttatttaaat tgattgtaaa
     3961 tgcagattaa ttcaaaaagt tgcgaaaaat gtataaaatt attgcaacgt ggatattgat
     4021 atgttaacat gatagtgttt gagaggtgta tacgtatgat acaagagggg aagttagagc
     4081 aacagttctt tgactatctt cactcagaac gtaattattc agtgaacact agtacagctt
     4141 atgaaaatga tttacttgat tttcgccgct ttttaaatga acaatctatt accacatatc
     4201 agcaagttac ttttctagat gtgcgtattt atttgacgga attaaagcaa aaatcttttt
     4261 ctcgtacaac cgtagctaga aaaatttcaa gtttacggag tttttacact tttcttttaa
     4321 gagagaatgt tattaacgaa aatccgttta cttacgtatc acatgcgaaa aatcagttaa
     4381 ggcttcccaa atttttctat tcagaagaaa tggaagcttt gtttcaagtg gtctatgaag
     4441 ataatgaaac gcttacattg cgagatagag tgcttttaga ggtgttatat ggtacgggaa
     4501 ttcgggtgag tgaatgtgct ggaatactgt tgcctgactt agatacatct tatcaagcca
     4561 tcctcatacg cggaaaaggg aataaagaac gatatgtgcc attcggggtg tatgcagaag
     4621 atgcgattac agattatttg ccagaacgtg ccaatcttat gtctcgctat aaaaagtcac
     4681 atgatgcttt acttgtgaat cattacggtg atcctttgac gaccaggggc attaggtatt
     4741 gcttgtcgaa aataattagt aaagcttcat taactcggaa aattcatccg catatgttac
     4801 gccacacatt tgcaacagac ttacttaata acggggcgga tatgcggacg gtacaagagt
     4861 tacttgggca cgctagctta tcatccaccc agatctatac gcacgtgaca aaagagcatt
     4921 taaagtctac ttatatgaaa catcatccta gggcttaaat ttggaggagg ttaaagaaat
     4981 ggaattgcac gctacaacga tatttgcggt tcaacatgac ggaaaagcag cgatggctgg
     5041 agacggtcaa gtgacgcttg gtgaatcggt cgtaatgaaa cataccgcca aaaaagttcg
     5101 ccgtcttttt catgataaag taattgctgg atttgcaggt tcagtcgcag atgcttttac
     5161 tttatttgaa aaatttgaag cgaaattgaa tgaatataat ggtaacttag aaagagcatc
     5221 agtcgaactt gctcaacaat ggcgcagtga cagtgtttta agaaaattag aagctatgct
     5281 aatcgtgatg gacaaagata cactactttt agtttcaggg acaggagaag ttattgaacc
     5341 agacgatggt attttagcta tcggttctgg aggtaattat gcgctagccg ctgggcgagc
     5401 acttaaaaga cataatggtg gtcaaatgga agcaaaggat atcgctcgtc atgcgctaga
     5461 aatcgcttct gaaatttgtg tgtttacaaa tgatcatatt acagtagaag agctttgaag
     5521 gagtggttaa tttgacaaat ataacgttaa tgaaccagtt gacaccaaag caaattgttg
     5581 aaaaactgga tcaatatatt attggacaaa ccggagcgaa gaaatcagtt gcagtagcac
     5641 taagaaatcg ttaccgtaga caactaatgg atgaatcaat ccgtgatgaa attattccga
     5701 aaaacattct gatgattgga ccaacaggtg ttggtaaaac agaaatagca cgtcgaattg
     5761 ccaaaattgt tcgtgctcct ttttccaaag tagaggctac taaattcacg gaagttggct
     5821 atgtcggtcg cgatgtagaa tcaatggttc gtgacttagt ggaggtatct gttcgtttag
     5881 taaaagaaga aaaaatgcaa ttagttcgtg ttaaagcaga aaaaaatgca gagaaacgtc
     5941 tgattaaact tttagcgcca agccaaaaga aaaaacaaac aacatcgcaa aatccgttag
     6001 aagcgctttt cggcggcatg aatcaaccag atgaatctcc tgaggaagaa gtagatcaag
     6061 aattaaagaa taaacgtagc caaattgaat ggcgtctaca aaacggcgag cttgatgatg
     6121 aaatagtaac agtagaagta aaagaacagc aaaatccaat gcttgatatg atgcgcggcg
     6181 ctggaatgga ccaaatgaat ggtatgcagg atgcgctttc gggcatgttc ccagcgaaaa
     6241 agaaaaaacg caaagtaacc gtacgtgaag cgaagaaaat tctttttgaa gatgaagcat
     6301 caaaattaat tgatgcagat gaacttgcag cagagggcat tcatcgtgcg gaacaaatgg
     6361 gtatgatttt tatcgatgaa attgataaaa ttgctagtaa agaaggcggc ggaaatgcac
     6421 aagtttcgcg ggaaggcgtc caaagagaca ttcttccaat cgtggagggg tcgcaaattt
     6481 ctactaaata tggtacagtc aacacggagt acattttatt tatcgcagca ggggctttcc
     6541 atatgtctaa accaagcgat ttaattccag agcttcaagg ccggttccca attagaattg
     6601 agctggataa attaactcaa gaagatttct acaaaatctt aacagaacca gacaatgcac
     6661 taattaaaca atacaaagct ttactgaaaa cagaaggaat tgacttgatt ttcaccaaag
     6721 aagccgtaga aagaattgcc gagattgcat tccaagttaa tcaagattca gataatatcg
     6781 gagcaagaag acttcatacc attttagaaa aattact
//
LOCUS       DASDXX010000143         6764 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.143, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000143 DASDXX010000000
VERSION     DASDXX010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6764
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.143"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            295..816
                     /locus_tag="U0280_002203"
     CDS             295..816
                     /locus_tag="U0280_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM2272128.1"
                     /translation="MTLKGKKVIALVSEDFEDLELWYPVLRLREAGASVHLVAEEAKK
                     VYHGKYGVPVTSDYDFDSVRAEDYDGILVPGGWSPDKLRRFDSVLNLVRAFDKAKKPI
                     GQICHAGWVLVSAGILEGVNVTSTPGIKDDMTNAGAIWHNEPVVTDGHIISSRRPPDL
                     PEYLPAFISALED"
     gene            complement(859..1125)
                     /locus_tag="U0280_002204"
     CDS             complement(859..1125)
                     /locus_tag="U0280_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272129.1"
                     /translation="MFLKSLLAGVALAVVVFLASFLMPDYTVSTLYSIVTTIIVFASI
                     ILSAFVSFGGRSGNPSRKSQLRWSILLLVAAIPSFIGFIVTFYF"
     gene            complement(1238..2530)
                     /locus_tag="U0280_002205"
     CDS             complement(1238..2530)
                     /locus_tag="U0280_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM2272130.1"
                     /translation="MFQLKANGTDVKTEVISGFTTFLTMVYIVVVNPAILSAAGVPFN
                     TVFMATIISAVIGTLWMAIFANYPIAIAPGLGMNAYFVTVVTTQKLDYSVAFAAVFVA
                     GIIFLLLSLTPLREKIIEAIPHNLKAGITAGIGLFIAFLGFRMTGIIVSNDSNLVGLG
                     DLHSKEAILAIVGLLITLILLALNVKGALFIGMIATGIIAFITGELKFTEGIVKLPPM
                     PEFVFTNPIHAFGDVMSYGLYAVVLSFLLITIFDTTGTMIGVAKKAGLMKGESLPNAK
                     QALMADAVATSVGSMFGTTPTSAYIESSAGVATGGRTGLTTLTVAILFMVSAFFAPLV
                     GAVSGISAITAPALIVVGSMMIGAVKEIDWDTLDEAFPAFLVILAMPLTSSIAIGLAF
                     GFISYPVLKVFTGKWRELNWFLIVIAVLFFILVAFLPH"
     gene            2703..3332
                     /locus_tag="U0280_002206"
     CDS             2703..3332
                     /locus_tag="U0280_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2272131.1"
                     /translation="MKAVVFDFDGTMLDTENLWYTETMNYLKETYDIDLPDEIYQQII
                     GTSEEPIIRYMMEATNGAFDKEAFLTTVAEACHLGQQSLGFRDGFKEFFEQVKANDFK
                     IGLATSSGFDWIGPTLDRLGILADFETIQTADHVDEIKPHPALYLQAVEALGVKPEEA
                     IAIEDSKNGALSAMQAGLKVYIVPNEATKNITFPKEATVVSSFAEINLK"
     gene            complement(3376..4524)
                     /locus_tag="U0280_002207"
     CDS             complement(3376..4524)
                     /locus_tag="U0280_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2272132.1"
                     /translation="MNNSKIAKKHQQMPVNILADIGTLAKTMPDILDLSIGDPDLITD
                     ESIINAAFEDVRAGHTKYTESGGDVELIDAIRGYFSRNYDLSFERSQIRATVGALHGM
                     YLTLQTILDDGDEVIIHEPYFSPYKDQVLNSGGTPIIIPTYEKDDFAINVDILEAAIT
                     DKTKALILNSPNNPTGAVFSPETFEKIANLAKKYDFFILSDEVYDGFSFYEDFVPMAK
                     FAPDHTITFGSMSKNFAMTGWRLGYMIAPTYLNEAAKIINEGITYSAPTPSQRAAIYA
                     LNHSETLIPLVTETFQKRLEYIAKRVEEIPYLSLHPLKGSIYAFINISKTNMDSVSFT
                     EYVLKETQVLVIPGLAFGESGDNYVRLAATQDISVLEEAFNRLAKLTF"
     gene            complement(4600..5325)
                     /locus_tag="U0280_002208"
     CDS             complement(4600..5325)
                     /locus_tag="U0280_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2272133.1"
                     /translation="MIDIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFL
                     RCLNLLEQPTTGTILFENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAP
                     MKVKNEDSAAAKKHALSLLEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLF
                     DEPTSALDPEMVGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQG
                     TPEEVFGNPQNDRTKDFLGKVLA"
     gene            complement(5318..>6764)
                     /locus_tag="U0280_002209"
     CDS             complement(5318..>6764)
                     /locus_tag="U0280_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465774.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2272134.1"
                     /translation="LQKIAAILLVFIVVFSGFTTVFAADTEDQTLAKIQEKGVLTVGL
                     SADYPPYEFHQTIDGKDKVVGFDVSIAEKIAKDLDVKLEIKEMNFDSLLGSLKTGKID
                     MIISGMSPTPERQKEVDFSDPYMFVQQRVVIRKTDKDKFTSVNDFSGVKVGAQKQTTQ
                     EELAQNELVGSEVVSLQKVPDLILNLKSNKVDAVVLEGPVAEAYISQDKTLAMADIKF
                     ANGSKETAIAMPKGSTALQEKVNASIKDIQDTGLLKKYQKEANKLMFQDGSFYEKYGN
                     YFITGTLITIALAAIGVLCGAILGSLLALMKLAKTRWLRWPAACYIEFVRGTPLLIQI
                     FIVFFGTQIIGMDVSAFVSGCIALSLNSAAYVAEIIRAGISAVNKGQMEAARSLGMTQ
                     GASMRYIILPQAVKNILPALGNEFVTVIKESSIVSVIGVTELMFMTGVVQGASFKPFI
                     PLIITSLIYFVLTFSLSRLLGVAERRMRTSD"
BASE COUNT         2096 a         1244 c         1376 g         2048 t
ORIGIN      
        1 tggggataag accctatcat ggttataatg acttttggtg tatccatctt ccaatagaat
       61 ggcaactagt cagacatctg tttagacacc aaaatcatta tttgttttca ttcatctcat
      121 tggccgtgta gttcatgtct atgcctcatc ccgttatgca tagacgcccg aacatgatgg
      181 caacgctgga aatgtttatt tcgagcgtct ttttttgtct tcttttatag gcggaataat
      241 ttaataacat tctagttatt gttatactgt agaagaggat aggaggagat ttatatgact
      301 ttaaaaggta aaaaagttat tgcacttgtc agtgaagact ttgaggattt agagctttgg
      361 tatccagtgc ttagattgcg cgaggcagga gcttcggtgc atctagtggc tgaggaagca
      421 aagaaagttt atcacggtaa gtacggagtt cctgttactt ctgactatga ttttgattct
      481 gttcgcgcag aagattatga tgggatttta gttccaggtg gctggtcccc agacaaatta
      541 cgccgttttg atagcgtact aaatttggtt cgtgcgtttg ataaggcgaa aaaaccaatt
      601 ggacaaattt gccatgctgg atgggtactt gtttcggctg gtattttaga aggcgtgaat
      661 gtaacaagta caccgggaat taaagatgat atgacgaatg cgggagctat ttggcataac
      721 gagcctgttg taacagacgg ccatattatt tcgagtcgtc gcccaccaga ccttccagaa
      781 tatttaccag catttatttc cgctttagaa gattaaaaaa agaagcattt ccatattttg
      841 ggaatgcttc tttttagttt aaaagtaaaa agttacgata aagccgataa aactaggaat
      901 tgctgcaact aaaagcagga tactccagcg taattggctt tttcgacttg ggtttccact
      961 acggccacca aaggatacga atgcggatag aataatggat gcaaagacaa tgatagtcgt
     1021 tacaatggaa tataaagtgg atacagtgta gtcaggcatc aaaaagcttg ctagaaaaac
     1081 aacaacagca agtgcgacac cagcgagcag tgattttaaa aacacgacaa gttcaactca
     1141 tttctaatta gtttctctct tctttatagc aaacgagcgg gtttttgtcc aataaaaaag
     1201 cgcctagctg agttcagtag acgcttttat tcattgatta atgtggtaaa aatgctacga
     1261 gaatgaagaa taatacggcg ataacgatta ggaaccagtt aagttcacgc catttaccag
     1321 tgaatacttt taatactggg taagaaataa atccgaatgc taagccgatt gcgatgcttg
     1381 aagtaagtgg catagctaga ataactaaga aagcagggaa tgcttcatct aatgtatccc
     1441 agtcgatttc tttaacagca ccaatcatca tactaccaac aactataagt gctggtgcag
     1501 taatagcaga aattccagag acagcaccaa caagtggagc gaagaatgct gataccatga
     1561 acaggatagc aactgtaagt gtagtaagac cagtacgtcc accagttgca accccagcag
     1621 aagattcaat gtaagcactt gttggtgttg taccaaacat cgaaccaaca cttgttgcaa
     1681 ccgcatcagc cattaaggct tgtttcgcat ttggtaatga ctcacctttc attaggccag
     1741 ctttttttgc aaccccgatc attgttccgg ttgtatcaaa aatcgttata agtaagaagg
     1801 acaggacgac agcatagagc ccgtaactca tcacatcacc aaaagcgtga ataggattag
     1861 tgaagacgaa ttctggcatt ggcggaagtt taacgatacc ttctgtaaat ttcagttcac
     1921 cagtgataaa agcaatgata ccagttgcaa tcatcccaat aaataaagca ccttttacgt
     1981 ttaaagcaag caagattaaa gtgattaaaa gaccaacaat agctaaaata gcttctttgg
     2041 aatgtaaatc acctaaacct actaagttag aatcgttaga aacaataatg cctgtcatac
     2101 ggaagccaag gaaagcgata aataaaccaa taccagcagt aatcccagct tttaaattat
     2161 gtggaatagc ttcaatgatt ttttcacgaa gcggtgttaa agataataat aagaaaataa
     2221 tacctgctac aaagaccgca gcgaatgcga ccgaataatc tagtttttga gttgtaacta
     2281 ctgtgacgaa gtaagcgttc ataccaagtc ctggcgcaat cgcgattgga tagttagcga
     2341 aaattgccat ccataatgta ccgattactg ctgaaatgat tgttgccatg aatacagtgt
     2401 tgaatggaac acctgctgcg gaaagaattg cggggttaac tactacgata tataccatcg
     2461 ttaggaatgt agtaaaacca gagataactt ccgttttaac atctgtgccg tttgccttta
     2521 attgaaacat gcgtgtgttt cactcctttt ttaaaatcat gcttaatggt aaataacgaa
     2581 cattaaaaac cacaaataca atattattcg ttttttacta aaaaagcaac cctttttcga
     2641 agatttctta aatagtttat ctatgttaca atgaaaatat cacttatact aggaggatgc
     2701 atgtgaaggc agttgttttt gattttgatg gaactatgct tgatacggaa aatttatggt
     2761 atacagagac aatgaactat ttgaaagaga cgtacgatat tgatttacca gatgaaattt
     2821 atcaacaaat tatcggtaca agtgaagaac caattattcg ctatatgatg gaagcaacga
     2881 acggggcttt tgataaagaa gcttttttaa ctactgtggc ggaagcttgt catcttggtc
     2941 aacaatcact tggctttcgt gatggtttta aagaattttt tgaacaagta aaagcgaatg
     3001 attttaaaat aggccttgca acgagttcgg gatttgactg gattgggcct acgctggatc
     3061 gtctgggcat tttagctgat tttgagacga tacaaacggc agaccatgtg gatgaaatta
     3121 agccacatcc ggcactttac ttacaagcag tagaagcgct tggggttaaa ccagaagaag
     3181 caattgctat agaagattcc aaaaatggtg cgctatcagc aatgcaggct gggttaaagg
     3241 tgtatatcgt accgaatgaa gctacaaaaa acatcacttt tccaaaagag gcgacggttg
     3301 tttcttcttt tgcagaaatc aatttaaaat agaaaaaaga gcaaacttgc ctatgaagcg
     3361 agtttgctct ttttgttaaa aggttaattt ggctagacgg ttaaatgctt cttctagcac
     3421 gctaatgtct tgggttgcag ctaggcgaac ataattatca ccagattcac caaaagctag
     3481 cccaggaatg acgaggactt gtgtttcttt taagacatat tctgtaaatg aaacggaatc
     3541 catatttgtt ttagaaatat taataaaggc gtaaatcgaa cctttaagtg gatgtaaaga
     3601 aagatatggg atttcttcca cccgttttgc gatgtattct aggcgttttt ggaaagtttc
     3661 tgttactaaa ggaattagtg tctcagaatg atttaatgcg taaatagcag ctctttggga
     3721 cggtgtagga gctgaataag taattccttc attaataatc tttgcagctt cgtttaaata
     3781 agtaggagca atcatatatc ctaagcgcca accggtcatt gcgaagtttt tagacatact
     3841 accaaatgta atcgtgtgat ctggcgcgaa tttggccatt ggtacgaagt cttcataaaa
     3901 actaaaacca tcatatactt catccgacaa aataaaaaag tcatattttt tcgctagatt
     3961 agcaattttt tcaaaggttt ccggtgaaaa aacagcaccg gtgggattat taggtgaatt
     4021 taaaattaaa gcttttgttt tatcagtaat ggcagcttct aaaatatcga cattaatcgc
     4081 aaaatcgtct ttctcatagg ttggaataat gataggagta ccaccggaat ttaacacttg
     4141 atctttatac ggggagaagt agggttcgtg aataatgact tcatcgccgt cgtcgagaat
     4201 ggtttgcaag gttaggtaca taccatgaag cgcgccaact gtagcgcgga tttggctgcg
     4261 ttcaaaagac aaatcataat tacgactaaa ataaccacga atagcatcta tgagttctac
     4321 atctccacca gattctgtgt attttgtatg gcctgcccgt acgtcttcaa aagcggcatt
     4381 aataatcgat tcatccgtaa ttaaatcagg atcaccaatg gataaatcga gaatatcagg
     4441 cattgttttg gcaagtgtgc caatatcagc aagaatgttc acaggcattt gttgatgttt
     4501 tttagcaatt tttgagttat tcatcatgta taattagctc cttttttcta taagtgcaga
     4561 taaacgcctc acctaaaata ggcgagacgt aatctttggt tatgctaaaa cttttcctaa
     4621 aaagtctttt gtacgatcgt tttgcgggtt cccgaatact tcttcgggcg tgccttgttc
     4681 ttgaatcacg ccagcatcca tgaagacaac gcggtcggca acttctcttg cgaagcccat
     4741 ttcgtgcgtt acgacaacca tcgtcatacc ttctttagca agcgacttca taacgcttaa
     4801 tacttcaccg accatttcgg ggtcaagtgc ggaagttggt tcatcgaata gcattacgtc
     4861 aggattcatt gcgagtgctc gggcaatggc tacccgttgt tgttgtccac cagaaagttg
     4921 ggaagggtag ctagttgctt tatcagctag accgactttt tccagtagag aaagcgcgtg
     4981 ttttttcgca gctgcactat cttcattctt tactttcata ggcgctaaca ttaggttttc
     5041 aagaacattt ttatgcggga ataagttgaa gttttggaaa accatgccca ttttttgacg
     5101 aagttcgttg acgttggttt gttttgccat taggtctttg ttttcaaaaa gaatcgtgcc
     5161 ggttgttggt tgttctaata agttcaggca acgtaagaaa gtactttttc cgcttccgga
     5221 agggccgata actacgacca cttctccaga tgcgatttca agatcaatac cttttaagac
     5281 ttctaatttg ccaaaatgtt tgtgtaaatt tttaatatca atcacttgtt ctcattctcc
     5341 tttcagcaac acctagtagt cttgataagc taaatgttag tacaaagtaa attaatgatg
     5401 tgataattag tgggataaat ggcttgaagc ttgcgccttg gactacgccg gtcataaaca
     5461 ttagttctgt tacaccgata acggatacga tggaagattc tttaataaca gtgacgaatt
     5521 cattcccaag agcaggaaga atatttttca cggcttgcgg taagatgatg taacgcatgc
     5581 tagcgccttg tgtcatacca agggaacgag ctgcttccat ttgacctttg ttgacagcag
     5641 aaatacctgc gcggataatt tcagcaacat aagcggcact gtttagcgat agggcgatac
     5701 aaccagaaac aaaggcggat acgtccatac cgataatttg agttccgaaa aagacgatga
     5761 aaatttgaat tagaagtggc gtaccacgga caaattcaat ataacatgct gctggccagc
     5821 gtaaccatct tgttttcgcc agtttcatga gcgctagtaa tgagccgaga atggcaccac
     5881 ataatacgcc aatagcggca agggcaatag tgattaatgt accagtgata aagtaattac
     5941 catatttctc gtaaaagcta ccatcttgga acattaattt attggcttct ttttgatatt
     6001 ttttcagtaa gccggtatct tgtatatctt taatagaagc gttgactttt tcttgtaaag
     6061 ctgtagaacc ttttggcatt gcgatggcgg tttctttgct accattagca aatttgatat
     6121 ccgccatagc gagtgtctta tcttgactaa tataagcttc agcaactgga ccttctaaaa
     6181 caaccgcatc gactttgttg cttttaaggt taagaataag gtccggtact ttttgaaggg
     6241 aaactacttc tgaaccaact agctcatttt gagctaattc ttcttgtgtc gtttgttttt
     6301 gggcaccaac tttcacgcca ctaaaatcat tcacacttgt aaatttatct ttatctgtct
     6361 ttctaatcac aacacgttgc tgaacgaaca tgtatggatc agagaaatcc acttcttttt
     6421 gacgttcggg tgtaggtgac atcccggaaa taatcatatc aatcttgcca gtttttagtg
     6481 agccaagcaa gctgtcgaaa ttcatttctt taatttctaa tttaacatct aaatctttgg
     6541 caattttttc cgcaatactt acatcaaaac caacgacttt atctttaccg tcgattgttt
     6601 gatgaaattc atacggtgga tagtcagcgg aaaggccgac cgttaaaaca cctttttctt
     6661 gaattttagc taaagtttga tcttctgtat cagcggcgaa cacagttgtg aagccagaaa
     6721 atacaactat aaaaacaagt aaaattgctg caatcttttg taat
//
LOCUS       DASDXX010000144         6733 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.144, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000144 DASDXX010000000
VERSION     DASDXX010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6733
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.144"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            203..505
                     /locus_tag="U0280_002210"
     CDS             203..505
                     /locus_tag="U0280_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272135.1"
                     /translation="MSLIPLSLIIFLGFLAVLCLFDFVFRLYWFKYFLATMGLIASGV
                     VFFISFYGGGMSQTEIAIAIFIGSFGEYVVSLIISLVRFISRKSKKPKQKKKAKTA"
     gene            complement(538..5676)
                     /gene="lapB"
                     /locus_tag="U0280_002211"
     CDS             complement(538..5676)
                     /gene="lapB"
                     /locus_tag="U0280_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-anchored adhesin LapB"
                     /protein_id="HEM2272136.1"
                     /translation="MKSKFFTGMMIFLLALICLTGMKAEAKSVGDISPDDISPEISDN
                     RFQSAEGKVLPNFEVDMSISDQSNGKLSIDEDFELTSDGDIILIGTVQGQYIQGTPIL
                     NENGQLNKIPNRDQGIIMRVDRTTKKVEWARVVNYEDGNYNSQYAADKWFSSYKSITT
                     NSSKSAFYVGGEVVNYYGDSGGGSTLIVKSIDANGNFQIAHKSYVSYGVPSRSDLTYA
                     YFMDIQMEGNTLIMSASARYAAQGKQFIRYTLEPASLSITKNEFNPLDNTFWAKYQRT
                     DVLKIDNKGLMAYNADVNGANQLKMSIRESENNYKEITLFDSVPEILANSSPYIFMED
                     RGDGNVFVVMSTPTTWYIALVNIASEQVVETKKMAMNSSTTLNSVIYSEGKGLLLGGS
                     THAEESIFGSEPLNKNNGYYLALGNDLNVTDSQILRTNQHNSLTTIINGVGNKVDGFF
                     SYDGLNNDGYIQNVESPNTYDVNPNGAMIFAEFNLQSAPVLDTGNPILAFYQGERRAD
                     FDELEGVKAYSGIDSSDITKSITKNTFDLYTVGVQQQLYQIEYLPGSGNKTTGTRNIQ
                     LLHPLETPKLEKSYADSHGAFKVGEVVPANAIHAFNGLDSANNVTYVVTAVDDEKITV
                     DASIKRTEGTKTAVISKEITLMTSTADETAVIDVTSVALAAGKYTSLTEVRSEGHFHI
                     YAETMDNVSIDPKYVKLTEDPENPVDWNVPGVYYVTASLDPASGYTAKDVKVSVAVVD
                     VGSPKVISVNMKPYNPTTALVVAEDDINGAGVYKINWAIKDANGLIIQQGVEESGATI
                     RVQTPVPIDLSTLNDGNYTLSVSAADRIGHTSEASEKAFTVDRQAPVVTADDKITYEI
                     NTKKTEEQFLNDVNVKTEAGAVIKTNFDTMVRMDSPGDYTVLVEATDAAGNQSDPIYV
                     IVTVEDTVAPIISADEAISYNQGNTRTEAQFLADIHATTDEPATITSDFADQVKFDTP
                     GVYAVTLKANDISGNQAIPRTVNVTVKDVIAPVITADEAIIYEKGITKSATDFLTDVH
                     AATNDGSAITSNFATVVDLNTPGDYDVTLNSTDAGGNKSDPITVTVTVRDTTPPVITA
                     DTTITYEKGTTKTAAAFLTDVNATTNDGSAVTSNFNPNSLKQVGTYQVTLSAIDENGN
                     YALPVKVTVIVQDTQKPVISSSATSITYERGEKKQETGFFLDLAIKTDDGTPVTSDFD
                     TAVNLDTAGSYTVTLNAEDESGNKADPVTITVTVADTEKPIITADTTITYAKGTTKTA
                     AQFLTDIHATTNDGSTITSNFDPTVLTQEGTYKVVLNAKDDSNNEADPVTVTITVVDT
                     KGPIINALNTITYERTINKNEADFLADIEATTDDGSTITTDFNSKDLDTVGTYTVTLN
                     AEDASGNKATPVKVTMKVEDNIPPIITADQSITYERGITKTEQAFYTDINAATSDNSA
                     ISSDFSKIDLTKTGNYEVLLQATDQSGNKALPLKINVLVQDTIAPVIKTTSREITNER
                     GVPMTEQQLLARIGANTDDGSKITTDYNPAIVNTSGDYLVHLYAVDAAGNQATPVEIT
                     IHVKDTTAPIITADKKISYPVGTDKTVTEFLQDIHATTDDGSKITTDFDPNMLKTKGT
                     YTIHLNAVDADGNKAKTIDVSLTVEEKVTPPTPPTPDDGGNNTNNGSNGTNDRNANIT
                     VNPTKQNTTATNESIPALGDTTSTIPVIVGMFLLATSLVLIRRK"
     gene            complement(5771..6682)
                     /locus_tag="U0280_002212"
     CDS             complement(5771..6682)
                     /locus_tag="U0280_002212"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM2272137.1"
                     /translation="MKRKVGIIGTGHVGSDVAFSLVTQGICDEIVLIDKIETKAESEA
                     LELRDMASMTNSYTTITSNDWSALGDADVIVMAVGPETLLREDRMEELVETSRSVAEI
                     VPKIIASGFKGIFVNITNPCDVITMLIQKLSGFDYSRVFGTGTSLDTARMRRVVGEAL
                     HINPKSVEGYVLGEHGESQFVAWSTVKIGGVSITDYKTTTPLDLPALKDAVRGGGWNI
                     LMGKGWTSFGIATAAAGIVDAILTDAKQVFPLAVFSEKTNTYIGQPAIIGANGVIDIL
                     EPKLTTDEVANFNASAEVIKTAFQLIE"
BASE COUNT         1776 a         1389 c         1196 g         2372 t
ORIGIN      
        1 attttaattc taagatagaa taccataaac tggtgccaga tgcaataata attcggtttt
       61 gtgttatgat aaaacagtca tctatccgct aaaattagct gaaaattagc gttcattatt
      121 ttttcactta tcattatttg taacctgtgg tatgatagat ggataaaaaa gatgttttac
      181 ttaactaaag gagattgtaa ctatgagttt aattccacta tccttgatta tttttcttgg
      241 atttttagca gttttatgtt tatttgattt tgtttttcgt ttatattggt ttaaatattt
      301 cctagcaact atgggactaa ttgcaagtgg tgtggtattt ttcattagtt tttacggcgg
      361 cgggatgtcc caaacagaaa tagctattgc catattcatc ggttcattcg gtgaatatgt
      421 tgtatctctt attattagcc tcgttcgttt tatttccaga aagtcaaaaa aacctaaaca
      481 aaagaaaaaa gctaaaacag cctaaaaagc tagcgacatg tttgtcgcta gcttttttta
      541 tttgcgtcta ataagaacaa gtgaagtggc taaaaggaac atacctacga taactggaat
      601 agttgatgtt gtatcaccta atgctgggat gctttcattt gtagcggtag tattttgctt
      661 ggtaggattt accgttatat tggcgtttct atcatttgtc ccattgctgc cgttattcgt
      721 attatttcca ccatcatctg gtgtcggtgg tgtcggcggc gtcactttct cttctactgt
      781 gaggcttaca tcgattgtct tagctttatt cccgtctgca tctactgcat ttaagtggat
      841 agtatatgtt ccttttgttt tcaacatatt tggatcgaaa tctgtcgtga ttttagaacc
      901 atcgtccgtt gtagcatgaa tgtcttgtaa aaattccgtt accgttttat ctgttccaac
      961 aggataacta attttcttat ctgccgtaat gattggcgcg gtagtatcct ttacatgaat
     1021 agtaatttct acaggtgtgg cttggttccc tgcggcatca acagcataca gatgaactag
     1081 ataatcccct gatgtgttaa caattgcagg gttataatcg gtggttattt tggaaccgtc
     1141 atctgtattg gcgccaattc ttgcaagtag ttgttgttcg gtcattggta caccacgctc
     1201 gtttgttatt tctcggctgg ttgtttttat aaccggagcg atagtatctt gaactagcac
     1261 attaatttta agtggcaatg ctttgtttcc actttgatcc gttgcttgga gtaagacttc
     1321 ataatttcct gtttttgtta aatcgatttt cgaaaaatca gagctgattg cgctgttgtc
     1381 acttgttgcg gcattaatat cggtgtagaa agcttgctct gtttttgtaa tgcctctttc
     1441 gtaagtgatt gattggtcag ctgtgatgat gggaggaatg ttatcttcta ctttcattgt
     1501 cacttttacg ggcgttgctt tattgccact tgcatcctct gcatttaatg tgactgtgta
     1561 ggtaccaacc gtatcaagat ctttactatt aaaatccgtt gttattgtag agccatcatc
     1621 tgtagttgct tcaatatctg ctaaaaaatc cgcttcgttt ttattgatag ttctttcata
     1681 ggtgattgta tttaatgcat tgataatcgg tccttttgta tctaccacgg tgatagtaac
     1741 agttactgga tctgcttcgt tgttgctatc atcttttgca tttaatacga ctttgtaagt
     1801 tccttcttgc gtaaggacag ttgggtcaaa attgctcgtg atggttgatc catcattcgt
     1861 cgttgcgtgg atatctgtta aaaattgagc agcagttttg gttgttcctt ttgcgtaggt
     1921 tatcgttgta tctgctgtga taattggttt ttctgtatca gcgacagtga cggtaatagt
     1981 gactggatct gctttattgc cactttcgtc ttctgcgttt agcgtcacag tataacttcc
     2041 cgctgtatcc agatttaccg ctgtatcaaa atcacttgta actggtgtgc cgtcatccgt
     2101 tttaatagct aaatctagga agaatcctgt ttcttgtttc ttttcgccgc gttcatacgt
     2161 aatgcttgtg gcactagatg atattacagg tttttgcgta tcttgcacaa taacagttac
     2221 cttgactggc aaagcatagt tcccattttc atcaatagcg cttaacgtca cttgataagt
     2281 ccctacttgc ttcaaactat ttgggttgaa gttagaagtt actgctgagc cgtcattcgt
     2341 tgttgcattt acatccgtta aaaaggcagc tgcagttttc gtggttcctt tttcgtaagt
     2401 gatagttgta tctgctgtaa taactggtgg tgttgtatca cgtacggtaa ctgttacggt
     2461 gattgggtca gatttattgc cacctgcatc tgtcgagtta agtgtgacat cgtaatcccc
     2521 cggtgtattt aaatctacta ccgttgcaaa attagaggtg attgccgagc catcgtttgt
     2581 agcagcatgc acatctgtta agaaatcagt agcagatttg gttatgcctt tttcgtaaat
     2641 aatcgcttca tctgctgtaa ttactggagc aatgacatct ttaactgtga catttactgt
     2701 tcttggtatt gcttggtttc cgctaatatc gtttgccttt aatgtgactg cgtagactcc
     2761 tggtgtatca aatttcactt gatccgcaaa atcacttgta atcgttgctg gttcatctgt
     2821 tgttgcatga atatcagcca gaaattgtgc ttctgttcgt gtatttccct ggttataact
     2881 aatcgcttcg tctgcactta taatcggtgc taccgtatct tctactgtta caatgacata
     2941 aatgggatca gattggttgc ccgctgcatc ggtagcttcc actaaaaccg tataatcgcc
     3001 tggcgaatcc attctcacca tcgtatcaaa attggtttta atcaccgctc cggcttccgt
     3061 ttttacattt acatcgttta aaaattgctc ttctgttttc ttggtgttta tttcatacgt
     3121 gatcttgtcg tcagctgtca caactggcgc ttgtctgtct actgtgaacg ctttttctga
     3181 agcttctgat gtatgaccaa ttctgtcagc cgctgatact gacaaggtat aattgccatc
     3241 attcaatgta gagagatcaa ttggaactgg cgtttgaact cgaatggtag caccactctc
     3301 ttccacacct tgttggataa taagtccatt cgcgtcttta attgcccagt tgattttata
     3361 cacgcctgcg ccattaatat catcttccgc aacgacaaga gcggttgttg gattgtacgg
     3421 tttcatgttt acagaaataa ctttcggact tccaacatca actacagcga cacttacttt
     3481 cacatctttc gctgtatatc cactcgccgg gtcaagtgat gcagtcacat aataaacacc
     3541 tggcacattc caatcaactg ggttttcagg gtcttctgtt agtttaacgt atttaggatc
     3601 gatggacacg ttatccatgg tttctgcata aatatgaaaa tgcccttcac ttcgaacctc
     3661 tgttaaggat gtatacttcc cagctgctag agccacactc gtcacatcga ttactgcagt
     3721 ttcatcagct gtcgaagtca taagtgtaat ttccttacta attacagctg ttttcgttcc
     3781 ttctgttcgc ttaattgaag catctacagt tattttctca tcatctactg cggtaactac
     3841 ataagtcaca ttgttagcac tatctaaacc attaaatgca tgaatagcat ttgcaggaac
     3901 tacttcacca actttaaaag ctccatggct atctgcgtag cttttctcta gttttggggt
     3961 ctcaagtggg tgaagcaatt ggatatttcg tgtaccagtg gttttatttc cactacctgg
     4021 caaatattca atttgataaa gttgctgttg tacgcctaca gtatataaat caaacgtatt
     4081 tttagtgata gattttgtta tatctgatga atcaattcca gagtatgctt tcaccccttc
     4141 cagttcatca aaatctgcac gacgttcccc ttgataaaat gctaaaattg gattacctgt
     4201 atcaagcact ggagctgatt gcaaattaaa ttctgcaaaa atcatcgctc cattcgggtt
     4261 cacatcatag gtgttcgggg actctacatt ttggatatat ccatcattat ttaatccgtc
     4321 atagctaaag aaaccatcta ctttattgcc gacgccatta ataatagtgg tcaatgaatt
     4381 atgttgattc gttcttaaaa tctggctatc cgttacgttc aaatcatttc caagcgctaa
     4441 ataatatccg ttatttttat tcaatggctc actgccgaaa atgctttctt ctgcgtgtgt
     4501 actaccacct aaaagcagac cttttccttc actgtaaatc acactgttta gcgttgtaga
     4561 ggagttcatc gccatttttt tcgtctcaac tacttgttct gacgcgatat taacaagcgc
     4621 gatataccat gtggtggggg ttgacatgac cacaaacaca ttcccatcgc cacgatcttc
     4681 cataaatata taaggagaag aatttgctaa aatttcagga acagaatcaa ataaagtaat
     4741 ttctttataa ttattttctg attcacgaat agacatttta agttggttcg caccatttac
     4801 atctgcgtta taagccatta gacctttatt atcgatttta agaacatcgg tcctttgata
     4861 tttggcccag aaagtgttat ctaatgggtt aaattcattt ttagtaatcg ataatgaagc
     4921 tggttctaaa gtataccgaa taaactgttt cccttgagca gcatacctag ctgaagctga
     4981 catgattaat gtgttacctt ccatttgaat atccataaaa taggcatagg ttagatctga
     5041 tcttgatgga acaccgtaac taacgtatga tttatgggct atttgaaagt taccatttgc
     5101 atcaattgat tttacaatta atgtactacc accaccagaa tcaccgtaat aattgactac
     5161 ttccccgcca acataaaagg cagatttact cgagttggtt gtaatcgatt tatacgaact
     5221 aaaccatttg tcagctgcat attgtgaatt gtaattaccg tcctcatagt taacaacacg
     5281 tgcccactcc actttttttg tggttcgatc gacacgcatt ataatccctt gatcacggtt
     5341 tggaatttta tttaattgcc cattttcatt taaaatgggg gttccttgta tgtactgacc
     5401 ttgcactgtt ccaatcaaaa taatatcacc atctgaggtt aattcaaaat cctcatcaat
     5461 cgataatttc ccgttacttt gatcactaat tgacatgtct acctcaaaat taggcaaaac
     5521 tttcccttct gcagattgaa agcgattatc cgaaatttcc ggtgaaatat catctggaga
     5581 aatatctccc accgattttg cttctgcttt cattccagta agacaaatta atgctagcaa
     5641 aaaaatcatc atacctgtaa aaaatttact tttcattcat ccccatctcc cttttataaa
     5701 cccccatttg ttttccccat ttcaaaagct attgccattt tattccccta ttttctccat
     5761 ggcaaactaa ttattcaatt aactgaaaag ctgttttaat aacttcagct gatgcattaa
     5821 aattagccac ttcatctgta gttagtttcg gttctaaaat atctatcacg ccatttgcac
     5881 caatgattgc tggttgtccg atgtacgtat ttgttttttc ggaaaataca gctaatggaa
     5941 aaacttgttt agcatctgtt aaaatcgcat cgacaatccc cgctgcagct gtggctattc
     6001 caaaactcgt ccagcctttg cccattaaaa tattccaacc accaccacga actgcatctt
     6061 ttaatgctgg taaatcaagt ggtgttgttg ttttataatc cgtgatgctt accccgccaa
     6121 ttttcaccgt agaccaagca acgaattgtg attcaccatg ctcgccaaga acgtatcctt
     6181 ccacgctctt tggattaata tgtaatgctt ctccaactac tcgtctcatt cttgctgtat
     6241 caagtgatgt tcccgtccca aatactcgtg aataatcaaa cccagataat ttctgaataa
     6301 gcatcgtaat cacatcacat ggattcgtaa tattcacaaa aatcccttta aaccccgatg
     6361 cgataatttt tggtacaatc tcagccactg accgacttgt ttcaacgagc tcttccatac
     6421 gatcctcgcg cagtaacgtt tctggaccaa cagccatgac aatgacatcg gcatcaccta
     6481 gtgcgctcca gtcattcgaa gttattgtag tatacgaatt cgtcatcgaa gccatatcgc
     6541 gcagttctaa cgcttcactt tctgctttag tttcgatttt atctattaac acaatttcat
     6601 cacaaatccc ttgagttacg agggaaaaag ccacgtcgct cccaacatga ccagtaccaa
     6661 ttattccaac cttccgtttc aaaaaatccc ctccacaatt aattacttga atttaatgcg
     6721 attaattcat att
//
LOCUS       DASDXX010000145         6730 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.145, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000145 DASDXX010000000
VERSION     DASDXX010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6730
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.145"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            56..1201
                     /locus_tag="U0280_002213"
     CDS             56..1201
                     /locus_tag="U0280_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2272138.1"
                     /translation="MTKSIRPELRDIQVSGIRTFNTRVTGIPDMIRLTLGEPDFPTPE
                     HVKQAAISAIEENFTNYTPNAGMPELLEAASTYFHEKYDLSYNNKEIIVTVGATEAIS
                     VALQTILEPGDEVILPDPIYPGYEPLITLNRAHPVKVDTTETNFKLTPEQLRAHITPK
                     TKALIIPYPSNPTGVTLSKKELFALAEVLNETGIFVIADEIYSELTYHEEHVSIAPLL
                     REQTIVINGLSKSHAMIGWRIGFLLAPEALTQEMLKIHQYSVTCASSISQKAALEALT
                     NGKDDAFQMRTEYKTRANFTQDRLEKMGFTVIPPDGAFYFFVKLPDEITENAFDWAVK
                     LAEEAKVAVVPGNAFSEKGDRYFRLSYATSFNNLAEALDRMAQFIAK"
     gene            complement(1238..2098)
                     /locus_tag="U0280_002214"
     CDS             complement(1238..2098)
                     /locus_tag="U0280_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2272139.1"
                     /translation="MEKIGFVGTGVMGSSMAGHLLEAGYEVLVYTRTKTKAEDLLEKG
                     ALWIKTPGELANKVDILISMVGYPKDVEELYLGENGFLENLAVGTVAIDMTTSSPALA
                     KKMAEFGREKGIGVLDAPVSGGDIGAKNGTLAIMVGGSEDVFLKVKPIFDILGSSVIL
                     QGDAGAGQHTKMVNQIAIASNMIGVTEAIIYAEAAGLNPSSVLDSISGGAAGSWSLAN
                     LIPRVLKDDFSPGFFIKHFIKDMGIAISEAKQMGLELPGLTLAEKMYQTLAEQGLSEE
                     GTQALIKYYR"
     gene            complement(2111..3145)
                     /locus_tag="U0280_002215"
     CDS             complement(2111..3145)
                     /locus_tag="U0280_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM2272140.1"
                     /translation="MVIYLLAGFFLLLFIVLSFIDRRRISNGIILTMALFFSVLSVVY
                     ATFSKGNELLVSVMGTVLLLLVLLIPFFVVGIATMLIVNGRLMLKREGRKLANMLPLI
                     IGLGILALIITWFGSILKTGSPILGIVVVFIVALVGYFSFLFLSFLLSTFLYQFNFPR
                     YNQDFLIVLGSGLIGGDRVPPLLASRLNRAIKFYDKQYAKKGKRATFIVSGGQGANET
                     ISEAEAMRGYLIEKGIDENFIIMEDQSVNTLQNMKFSKAKMDAIMSNYNSLFSTNNFH
                     LFRAGIYARKAGLKSQGIGAKTALYYMPNALIREFIAITVMYKKVHMVLLGLLLLFFA
                     FLAIIGVTFR"
     gene            complement(3258..4976)
                     /gene="ptsP"
                     /locus_tag="U0280_002216"
     CDS             complement(3258..4976)
                     /gene="ptsP"
                     /locus_tag="U0280_002216"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEM2272141.1"
                     /translation="MAKELKGIAASDGIAIAKAYLLVEPDLSYEKTEVTDVESEVKRF
                     ESALEVSRTELSMIREKAAKDLGEDKAQIFDAHLLVLNDPELTGPIEESIKNSKTNAE
                     TALQETTDMFIGMFESMDNEYMRERAADIKDVRKRVLSHLLGVTIPNPALIDEEVVVV
                     AADLTPSDTAQLNRNFVKGFVTDIGGRTSHSAIMARSLEIPAVVGTKEVTASVAKNDI
                     VIIDGLEGNVIIHPTEEQIAHYEKIKSDFALQQAEWDKLKNEKTVSKDGVHVELAANI
                     GTPNDLEGVISNGGEAVGLYRTEFLYMGRDNFPTEEEQFEAYKAVVSGMDGKSVVVRT
                     LDIGGDKTLPYLELPEEMNPFLGFRAIRLCFANEELFRTQLRALLRASVYGNLKIMFP
                     MIATVNEFRQARDILLDEKAKLKAAGTEVSDSIELGIMIEIPAAAVLADQFAKEVDFF
                     SIGTNDLIQYTMAADRMNERVSYLYQPYNPSILRLVKMVIDASHKEGKWTGMCGEMAG
                     DQTAVPLLLGLGLDEFSMSASSILKSRSLIKRLDQSEMVKLAEEALNKSTAEEVVELV
                     EKYTAE"
     gene            complement(4976..5242)
                     /locus_tag="U0280_002217"
     CDS             complement(4976..5242)
                     /locus_tag="U0280_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HEM2272142.1"
                     /translation="MEQASFVVIDETGIHARPATLLVQAASKYSSDVQIEYTGKKVNL
                     KSIMGVMSLGIGKGADITIYTEGSDEKEAIEGLTEVLKKEGLAE"
     gene            5549..5833
                     /locus_tag="U0280_002218"
     CDS             5549..5833
                     /locus_tag="U0280_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkvS family protein"
                     /protein_id="HEM2272143.1"
                     /translation="MHTFFFSKIDATPKIEGVITMAKAHVGDIIEFKDGLTGIVEKLN
                     ENSVIVDLTYMENFKDLGIEEKTVVNHKNYQIIHSVEEDDEVENVEETEE"
     gene            5938..>6730
                     /locus_tag="U0280_002219"
     CDS             5938..>6730
                     /locus_tag="U0280_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2272144.1"
                     /translation="MKLESKKKIAIIGAGPGGLAAGMLLSQLGYQVNIYEKNDRIGGR
                     TALHRMGKYSFDVGPSALTMTHVLTSLFMDCNRNILDYVSLLPINPIHTLYFKDITFP
                     LYSDQSETKAVIQTYFPGEEAGFERFMKENTKKMLYISPLNQFNYSSLFDFFRPTTLR
                     AIPSLTLGRSLMDDLARYFNSKYLRIAFSLQMRYLGMSPWDIPAAYSIIPFSEYYYGT
                     FHPIGGQNKIVEAMQQVVTENKGKFFFNSEVTAFESNGKEITGAVL"
BASE COUNT         2143 a         1364 c         1121 g         2102 t
ORIGIN      
        1 aagcttactc ccacctgatt ttcacgggat tttcttataa agaaaggtga cgaaaatgac
       61 aaaatctatt cgaccagaat tacgcgatat tcaagtaagt ggtatcagaa cttttaatac
      121 acgagtgacg ggtattcctg atatgatccg tttaacactt ggcgaacctg actttccaac
      181 gcctgagcat gtcaaacaag cggccatttc agcaatagaa gaaaatttca ccaactatac
      241 acccaatgcc gggatgccag aattactcga agcagcttcc acttattttc atgaaaaata
      301 tgacttgtcc tataataata aagaaattat cgttacggtc ggcgctacag aggctatctc
      361 cgttgccttg caaacgattt tggagcctgg ggatgaagtt atcttaccag accctattta
      421 tccaggttac gagcctctaa ttacgttaaa tagagcgcac ccggttaaag ttgatacgac
      481 cgaaactaat ttcaaattaa cacctgaaca attacgagca catatcacac caaaaactaa
      541 agcacttatc attccttatc catccaatcc gaccggtgtt acactctcta aaaaagaact
      601 tttcgcatta gcagaagtac taaatgaaac aggtattttt gtcattgctg atgagattta
      661 cagtgaatta acttatcacg aggagcacgt gagcattgcg cctttactaa gagagcagac
      721 aatcgttatc aacggtttat caaaatctca cgcaatgatt ggttggcgaa ttggcttttt
      781 acttgcacca gaagccctta cacaagaaat gttgaaaatc catcaatatt cggttacttg
      841 cgcaagttcc atttcccaaa aagcagcact agaagctctt actaacggca aagacgatgc
      901 ttttcaaatg cgaactgaat acaaaacacg cgctaatttc actcaagatc gactagaaaa
      961 aatgggcttt actgtcatcc cgccagatgg tgcattttac ttcttcgtca aacttcccga
     1021 tgaaataacc gaaaatgctt tcgattgggc tgtaaaactt gctgaagaag ccaaggttgc
     1081 agttgttcct ggaaatgctt tttccgaaaa aggcgatcgt tacttccgtc tttcttatgc
     1141 tacttccttt aataatcttg ctgaagcatt agatcgaatg gctcagttta tagcaaaata
     1201 aaaaaacatc cactaactta aattagtgga tgttttttta acgataatat ttaatgagcg
     1261 cttgcgtccc ttcttcactc aaaccttgtt cagctagcgt ttgatacatt ttttcagcta
     1321 aagttagccc aggaagttct aagcccattt gttttgcttc tgagattgcg attcccatat
     1381 cttttataaa atgcttaata aagaaacccg gagaaaaatc atccttaagt acacgtggaa
     1441 tcaagtttgc aagcgaccaa ctgcctgctg caccacctga aattgaatcg agaacacttg
     1501 atggattaag tccagccgcc tccgcataaa tgatcgcttc agtcacacca atcatgttgg
     1561 aagcaattgc aatttgattc accattttgg tatgttgtcc agcacctgca tcaccttgca
     1621 gaatcacact gctaccaaga atgtcaaaaa ttggtttcac ttttaaaaat acgtcttcag
     1681 atcctcctac cataattgcg agcgtgccat ttttcgcgcc tatgtcgcca cctgaaacag
     1741 gagcatcgag tacaccgatt cctttttcac ggccaaattc agccattttt ttagctaatg
     1801 ccggtgagga agttgtcata tcgattgcta ctgtgccaac cgctaaattt tctaaaaagc
     1861 cattttcgcc taagtaaagc tcttccacat cttttggata accaaccatt gaaattaata
     1921 tatccacttt attagccaat tctcctggtg tttttatcca tagtgctcct ttttcaagta
     1981 aatcttctgc ttttgttttt gtgcgagtat acaccaatac ttcataacca gcctccagta
     2041 aatgccctgc catactcgaa cccattacgc ctgtaccaac aaatccaatt ttctccatca
     2101 ggctaacctc ctatctaaaa gtaacaccta taatcgctaa aaacgcaaaa aacaatagta
     2161 ataaaccaag taagaccata tgtacttttt tatacattac agtaatagca ataaattctc
     2221 gaattaacgc attaggcata tagtataaag ctgtttttgc accaatccct tgactcttca
     2281 agcccgcttt tcttgcataa atacctgctc taaataaatg aaaattattc gttgaaaata
     2341 aactattata gtttgacata attgcatcca tttttgcctt tgaaaatttc atattttgca
     2401 gtgtattaac ggattgatct tccataataa taaaattttc atcaatgcct ttttctatta
     2461 aataacctcg catcgcttct gcttctgaaa tagtttcatt agcaccttgt ccaccagata
     2521 cgataaaagt agctcgtttg ccttttttgg cgtattgctt gtcgtagaac ttaatagcgc
     2581 gattcaaccg actagcaagc aatggaggta ctctatcacc gcctatcaga ccacttccta
     2641 gtacaatcag aaaatcttga ttatatcttg ggaaattaaa ttgatagaga aaagtcgata
     2701 aaagaaacga taaaaataaa aaggaaaaat aaccaactaa tgccacaata aaaactacca
     2761 caatcccaag aatcggacta cctgttttta aaatactacc gaaccatgta ataataagtg
     2821 ctaaaatgcc taaaccaata attaaaggaa gcatattggc taatttacgc ccttcacgtt
     2881 tcaacattaa tcgtccattt acaatgagca tcgttgctat ccctacaaca aaaaatggaa
     2941 taagtaaaac taataaaagt aacaccgtcc ccataaccga gacgagtagt tcattccctt
     3001 ttgaaaaagt agcataaacc accgaaagca cagaaaaaaa tagtgccatt gtcaaaataa
     3061 tcccattgct aatacgtcgt ctatctataa acgacaagac aatgaacaga agcagaaaaa
     3121 aacctgctaa tagatagata accaatcttg ttgccccctt ttaaaactaa ctgtatttcc
     3181 aattatactt gggcggaggc tatttcacaa cataaaaaga cctagacaac aaaattgtct
     3241 aggtctttat tcagatatta ttctgcagta tatttttcaa ctaattctac aacttcttct
     3301 gctgtagatt tatttaaagc ttcttccgct aatttcacca tttcagattg atctaaacgt
     3361 ttgattaacg aacgagattt aagaatgctt gaagcactca ttgaaaattc atctaagcct
     3421 aggcctaaaa gaagtggtac agccgtttga tctccagcca tttctccaca cataccagtc
     3481 catttgccct ctttatgaga agcatcgata accattttga ctaaacgtaa aatggatgga
     3541 ttgtatggtt ggtaaaggta agaaacgcgt tcattcatac ggtctgcagc cattgtatac
     3601 tgaattaagt catttgttcc gatagagaag aaatcaactt ctttcgcaaa ttgatcagca
     3661 agaacagcag cagcaggaat ttcaatcata attccaagtt cgatggaatc agatacttct
     3721 gttccagcag cttttagttt tgctttctca tctagtaaaa tatcacgcgc ttgacggaat
     3781 tcatttactg ttgcaatcat cgggaacata atttttaagt taccatatac acttgcgcga
     3841 agtaaggcgc gaagttgtgt acggaataat tcttcattcg caaaacaaag acggattgca
     3901 cggaatccta agaatgggtt catttcttca ggaagttcta ggtatggtaa tgttttatcg
     3961 ccaccgatat ctaatgtacg aacaaccaca gattttccgt ccattccgga aactactgct
     4021 ttataagctt cgaattgctc ttcttctgtt gggaaattgt cgcgacccat gtacaagaat
     4081 tctgtacgat aaagtccaac tgcttcccca ccgttagaaa taacaccttc taaatcattc
     4141 ggagttccga tgtttgctgc aagctccacg tgaacgccgt ctttagaaac ggttttttca
     4201 tttttaagtt tatcccattc tgcttgttgt aaagcaaaat cagatttaat tttttcatag
     4261 tgagcgattt gttcttctgt tgggtggatg ataacattac cttccaaacc atcaataata
     4321 acaatatcgt ttttcgctac gctagcagta acttcttttg ttccaactac tgctggaatt
     4381 tcaagagaac gtgccataat agcggagtga gaagtacgtc caccaatatc cgttacgaaa
     4441 cctttaacaa agttacggtt aagttgtgcg gtatcggaag gcgttaaatc agctgcaaca
     4501 acaactactt cctcatcaat taaagctgga ttaggaatag ttacacctag taagtgagaa
     4561 agaacacgtt tacgtacatc tttaatatcc gctgcacgtt cacgcatgta ttcgttgtcc
     4621 atagattcaa acataccaat aaacatgtct gtcgtttctt gtaaagctgt ttctgcattc
     4681 gttttagaat ttttgatact ttcttcaatt ggtcctgtta attcaggatc atttaacact
     4741 agaagatgcg cgtcaaaaat ttgtgcctta tcttcgccta agtctttagc agctttctca
     4801 cgaatcattg aaagttctgt tctagaaact tctaacgcgc tttcaaaacg ctttacttca
     4861 ctctcaacat ccgtaacttc tgttttttca taggaaagat caggttcaac gagcagataa
     4921 gctttcgcaa tggcaatccc atcagatgct gcgatacctt tcaactcttt agccattatt
     4981 cagccaatcc ttctttctta agaacttcag ttagtccttc aattgcttct ttttcatcgc
     5041 taccttcagt gtagatagta atgtcagcgc ctttaccaat accaagagac ataacgccca
     5101 tgattgattt aaggtttact tttttgccag tgtattcaat ttgaacgtca gagctgtatt
     5161 tacttgcagc ctgcaccaat agagttgccg ggcgtgcgtg aattcctgtt tcatcgatta
     5221 ctacaaaact tgcttgttcc ataatttaca ttctcctttg taaagaaatt tgttgtaacc
     5281 ttttaagccg aaaaaacttc agccaaaaag actatccctc aattaaaaag agtaccatgt
     5341 tttacctatt gttacaacta tttgattaaa aattttttag aatgtttttt tgcagagcac
     5401 cttatttcgc tctttttaaa tagaaaaaat agaacgtttt tttaaattta tctctaaatt
     5461 gtttctgttt tgaattaaat agcacttttt aatggcttat agttgatttt aataggtttt
     5521 tagtgcaaaa tttaaggaag gttcaaaaat gcatacattc tttttcagca agatagacgc
     5581 aacaccgaaa attgaaggag tgataacaat ggcaaaagca catgttggag acattattga
     5641 atttaaggat ggccttacag gaatcgttga aaaactcaat gagaattccg ttatagtcga
     5701 cttaacttat atggaaaatt ttaaagattt aggtattgaa gaaaaaacag tggttaacca
     5761 caagaattac caaattattc attctgtaga agaagatgat gaagttgaaa atgtagaaga
     5821 aacagaagaa taaaaaaaca gaatagtttt taagcgcgca aaaataaagc atttccgagt
     5881 gataatgctc tatatttttg cgttttttat atgtatataa acggggtaaa ggagcgtttg
     5941 aaattggaaa gtaaaaagaa aattgccatt ataggagctg gacctggtgg gttggcggcc
     6001 ggtatgctat taagtcaact aggttatcaa gtaaacatct atgaaaaaaa tgatcgaatt
     6061 ggtggaagaa cggcgttaca cagaatgggt aaatactcat ttgatgtcgg accttctgca
     6121 ctcaccatga cgcatgtttt gacttctctt tttatggatt gtaatcgtaa tattttggat
     6181 tatgtttcgc ttttaccaat caatccaatt catacgcttt attttaaaga tatcaccttc
     6241 ccgctttata gcgatcaatc tgaaacaaaa gcggttatcc aaacttactt tcctggcgaa
     6301 gaagctggtt ttgaacgctt tatgaaagaa aacacgaaaa aaatgctata tatttcgccg
     6361 ctcaatcaat ttaattatag ttctttattt gattttttcc gccctacaac tttgcgtgct
     6421 atacctagtt tgacacttgg acgatcgttg atggatgatt tagcaagata ttttaatagt
     6481 aagtaccttc gcatcgcttt ttccttacag atgcggtatt taggcatgtc accatgggat
     6541 attccagctg cttatagtat tattcctttt tccgaatatt attatggaac ctttcatcca
     6601 attggtgggc aaaataaaat tgtcgaagcg atgcaacaag tagttacaga aaataaaggg
     6661 aagtttttct tcaattccga agtgacagca tttgaatcga atggtaaaga aataactggc
     6721 gctgttcttg
//
LOCUS       DASDXX010000146         6648 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.146, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000146 DASDXX010000000
VERSION     DASDXX010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6648
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.146"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            109..1629
                     /locus_tag="U0280_002220"
     CDS             109..1629
                     /locus_tag="U0280_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HEM2272145.1"
                     /translation="MKKRLATTFIMLLSLALIIAGCGSNNTSKSDTEKTKEKEKTEVT
                     SGASKTSYTDPSELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMK
                     ASSGMNASETKFQKEEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDS
                     MDIKLNNLTITGGMSEKRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQ
                     KDGKVTGVKVKLNNKDEKTISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGST
                     GDGIKMIEKLGGTTVDMDQIQVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELD
                     TRDNVTASINKLPEKSAYLVFDSGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPK
                     EELTKTLDTWNASVKNKKDEAFGRTTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTN
                     TEVLDKDGKPITGLFAAGEVTGGLHGENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ"
     gene            1833..2849
                     /locus_tag="U0280_002221"
     CDS             1833..2849
                     /locus_tag="U0280_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEM2272146.1"
                     /translation="MLKMGFIGNGKSTNRYHLPFILERDNIEVKTIYNRNPKTATWDK
                     IEGVHYTTDLDELLKDPEIQLITISTTQSSHFDYAKMVLENGKNVLVEKPFMMTYAEA
                     KEIFELAKERDLLVQCYQNRRFDSDFLTAQKVIESAKLGDLLEVEMHYDYFRPEIPES
                     VHEFKFYDSYLYGHGCHTIDQVLSYFGKPDNIHYDVRQLLGEGRMNDYFDLDLYYGVT
                     KVSVKSSYFRIKARPSFVLYGKKGMFTKETKDRQEEHLKLFYMPSNPDFGIDLPEHYG
                     TLTYVDDAGVWHEEKVISEVGDYGRVYDGLYDAIINGKPKQVTDEETLLQMEILEKGV
                     EACK"
     gene            3050..3496
                     /locus_tag="U0280_002222"
     CDS             3050..3496
                     /locus_tag="U0280_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2272147.1"
                     /translation="MNISNLINEDRIIFDNRIQTKQLLFEKVAEVLGEEGSITNPKKF
                     IRDLYKREEETSTGIEDGFGIPHAKSKYVKEPLIVFVHSGIINDYFGLDDSPIECSFL
                     IGVPKKATDVHLQILSELSRKLMNKEFREKLKNSKNKTEIITILSN"
     gene            3510..4904
                     /locus_tag="U0280_002223"
     CDS             3510..4904
                     /locus_tag="U0280_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM2272148.1"
                     /translation="MKIVGVTACPTGIAHTYMSAEKLTITAEALGYEVKIETQGAKVE
                     NVLTKEDIATADYVILAVDKEIDTSRFAGKKIKKVSTSRAIKEADVVIEETISGKGLI
                     SLEAKSSDISSEQPSKASLYNHFMNGVNYMLPFVIAGGILIAISFAFGIDASNPDSDS
                     YNALAAAFSKIGGDTAFGLMVPALAAGIAVSVAGRAGFAPGLVAGTLATVGGSGFLGG
                     MIGGILAGYVAHFFANKVNVTKSLASIYQLIVVPLLGITIVGLAMVFIIDTPIAWVLN
                     ALTGWLNGLGETSGVVFGLLIGVMMAADMGGPINKSISTFSIGLMSAGVTAPIAACMA
                     AGMVPPLGLALATLLFKNKFTKEEKTAGNSCWVLGASYITEGAIPFAVADPLRVIPSL
                     MLGSATAAAISMGAGVTSMAPHGGIWVMFIPNVINHLFIYLLAIAAGTVVTAISVGLL
                     KTPLNKRKNKEEMI"
     gene            4904..5764
                     /locus_tag="U0280_002224"
     CDS             4904..5764
                     /locus_tag="U0280_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketose-bisphosphate aldolase"
                     /protein_id="HEM2272149.1"
                     /translation="MLYTMKDLLAVGKEHQFAVPAFNICSFDMLKAIMEEVEANNAPV
                     ILEIHPDEIEYLGDNFVATVREYAHKSKVPVVIHMDHGGTIKDVMRAIRNGYTSVMID
                     ASRASYEENVALTKQVVELAHKVGVSVEAELGTIGNNGSAEGGADTIIYTDPDQAEDF
                     VQRTGIDTLAVAIGTAHGLYPKDKKPELNMPLLKELNKRLDIPFVLHGGSGNPDKEVS
                     ESVQYGVRKVNLSSDLKSVFFEEVRRVLVDNPAMYEPNQVYPSANEKVKEVVRHKLHI
                     LNTTGQRDKY"
     gene            5821..6591
                     /locus_tag="U0280_002225"
     CDS             5821..6591
                     /locus_tag="U0280_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2272150.1"
                     /translation="MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVE
                     LEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFL
                     DSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
                     AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGH
                     KFMHQSLACHDIDYLITDFKLDPDVEEQFKTHQITCLY"
BASE COUNT         2311 a         1096 c         1444 g         1797 t
ORIGIN      
        1 aattcgcctg atgacctgta aagatatctc aattagtgat ataatatgtt aatataatca
       61 caaactattg gtctagggga aaattttcaa aaaagtggag gtacgaaaat gaaaaaaagg
      121 ttagctacaa ctttcatcat gctactatcg cttgcattaa ttatcgcagg ttgtggcagc
      181 aataacacaa gcaaaagtga cacggagaaa acaaaagaaa aagaaaaaac agaagttaca
      241 tcgggagcat caaaaactag ttacacagat ccatccgaat taaaagataa atacgatatc
      301 gttattgttg gtgcaggtgg tgcaggaatg tccgcagcac tagaagcaaa agcgaaaggc
      361 atgaacccag taatccttga aaaaatgcca ctagcaggcg gaaacacaat gaaagcctct
      421 tctggtatga acgcctctga aactaaattc caaaaagaag aaggaattaa tgatagcaac
      481 gacaaatttt acgaagaaac attaaaaggt ggtcatggaa caaacgataa agcaatgctt
      541 cgttttttcg tagacaattc cgccagcgcc attgactggt tggattccat ggacattaaa
      601 ttaaacaact taactatcac aggcggaatg agcgaaaaac gtacgcaccg tcctgaagat
      661 ggctcggctg ttggtaaata cttagtagac ggtttactaa aaaatgttca agaacaaaaa
      721 attccggttt tcgttaacgc agacgtaaaa gaaattacac aaaaagacgg aaaagtaact
      781 ggcgtgaaag taaaattaaa caataaagac gaaaaaacaa ttagttcgga tgcagtagtt
      841 gtcacaactg gtggctacgg agctaataaa gatatgattg aaaaagaacg tccagactta
      901 aaaggatatg taacaacgaa ccaagaagga agtactggcg acggtattaa aatgatcgaa
      961 aaacttggtg gaacaacagt ggatatggat caaattcaag ttcacccaac tgttcaacaa
     1021 gataaatctt acctcatcgg tgaagccgtt cgaggtgaag gtgcgatttt agtctctcaa
     1081 gaaggtaaac gtttcggaaa cgaattagac acacgtgata acgttacagc ttccatcaac
     1141 aaattaccag aaaaatccgc gtacctagta tttgattcag gcgtgaaaga ccgcgtcaaa
     1201 gctatcgcgc aatatgaaga aatgggcttt gtggaagaag gtaaaacaat tgatgaatta
     1261 gccggcaaaa tcaatgtacc aaaagaagag ctaactaaaa cattagatac ttggaatgca
     1321 agtgtgaaaa acaaaaaaga cgaagcattc ggcagaacaa ccgcaatgga taatgattta
     1381 tctaaagcac catattacgc aatcaaaatc ggaccaggaa ttcattacac aatgggtggc
     1441 gtaaaaatca atacaaatac agaagtttta gacaaagacg gtaaaccaat cacaggccta
     1501 tttgctgcgg gagaagtaac tggtggcttg cacggggaaa accgtattgg cggaaactct
     1561 gtcgctgaaa tcattatttt cggacgtcaa gctggcgaca aatcagcaga atttgtaaaa
     1621 gcacaataag aacccataca ccatagtgat gtgattaata gaaaataaaa acttgttagg
     1681 acgccttaaa cagacgtttt agcaagtttt ttattggcta aatagcgcgt tagtgtagta
     1741 ctatggatgg gtaacaagtg agatatatac actgataaat tagcagcgtt taagctaaat
     1801 ttgttagttt gttaaaataa ggaggaaata gtatgttgaa aatgggtttt atcggaaacg
     1861 gaaaaagtac gaatagatat catttaccat ttattttaga gcgggataat attgaagtga
     1921 agacgattta taatcgaaat cccaaaacag ccacatggga caaaattgaa ggggttcact
     1981 atacaaccga cttagacgag ctgttaaaag acccagaaat ccagttaatt accatctcta
     2041 caacacaaag ctctcacttc gactatgcca aaatggtgtt agaaaacggc aaaaatgtgc
     2101 ttgttgaaaa accatttatg atgacatacg ctgaagcgaa agaaattttc gaactagcta
     2161 aagaacgtga tttactcgtt caatgctacc aaaatcgtcg tttcgattcc gatttcctta
     2221 cagcacaaaa agtaattgaa agtgcaaaat taggcgattt attggaagta gaaatgcatt
     2281 atgactattt ccgtccagaa atcccagagt cggttcatga atttaaattc tacgacagtt
     2341 atttatacgg tcacggctgc catacaatcg accaagtact ttcttacttc ggcaaaccgg
     2401 acaacatcca ttatgacgtg cgccaactgc tcggcgaagg acgaatgaac gattatttcg
     2461 accttgattt atattatggc gtaacaaaag tatccgtaaa atcaagctat ttccgtataa
     2521 aagcccgtcc aagctttgtc ctttacggca aaaaaggtat gtttacaaaa gaaacaaaag
     2581 accgccaaga agaacattta aaactatttt acatgccaag taatccagac tttggaatcg
     2641 atttaccaga gcattacgga acgcttacgt atgttgatga tgccggagtt tggcatgagg
     2701 agaaagtaat ctctgaggtt ggcgactacg gccgcgttta tgatggtttg tatgatgcaa
     2761 ttattaacgg gaaaccaaaa caagtaactg acgaagaaac cttgctacaa atggagattt
     2821 tagaaaaagg cgtcgaagct tgtaaataat gaaaaattgt ccgcgggagc aagcttgcgg
     2881 acaatttttt tggataaaaa tgattgattt cgttcatata aacaaccaaa atagctctaa
     2941 aaatgaactt tttgcataat acacccataa tattgaatga agtcgttcag cgtgatatag
     3001 tgtaatcaaa caagtgaagc gcttactttg ttgagagagg atgtggatta tgaatatatc
     3061 gaatttaatt aatgaagacc gaattatttt tgataatcgt attcaaacaa aacaattatt
     3121 atttgaaaaa gtagcagaag tactaggtga agaaggttct ataacaaatc caaaaaaatt
     3181 tatacgtgac ttatataaac gagaagaaga aacttctact ggaattgaag atggttttgg
     3241 catccctcat gcaaaaagta aatatgtaaa agaaccattg attgtttttg ttcattctgg
     3301 cattataaat gattattttg gattagatga ttcaccgatt gaatgtagtt ttcttattgg
     3361 tgttccgaaa aaagccacag atgttcactt gcaaatccta agtgaactat cgaggaagtt
     3421 aatgaacaaa gaatttcgtg aaaaattaaa aaattccaaa aacaaaacgg aaattataac
     3481 aattttatcg aactaaggag gcgtttcaca tgaaaatagt tggtgttact gcttgtccca
     3541 ctggtattgc gcatacgtat atgtctgccg agaaattaac tataacggca gaagcgcttg
     3601 gttacgaagt gaaaatcgag acacaaggag ctaaggttga aaatgtttta acgaaggaag
     3661 acatcgcgac tgctgattat gtcattttag cagtcgataa agaaatagat acatcaaggt
     3721 tcgctggaaa gaaaattaaa aaagtatcca cttccagagc gattaaagag gctgatgtgg
     3781 ttattgagga aactatttct ggtaaagggt taatcagttt ggaggcgaaa agttcggata
     3841 taagttcgga acaaccgtca aaagcaagtt tatacaatca ctttatgaat ggtgttaact
     3901 atatgttgcc atttgtcata gctggcggga ttttaattgc tattagtttt gcttttggaa
     3961 ttgatgcctc aaaccctgac tctgattcgt ataacgcact tgcagctgca ttttcaaaaa
     4021 ttggtgggga tactgcattt ggtttaatgg ttccagccct tgcagcaggg atagcggttt
     4081 ctgtggctgg tcgagcagga tttgcgcccg ggcttgtggc agggacactg gcgactgttg
     4141 gtggatcagg atttctaggc ggtatgattg gtggtatttt ggctggttac gtggcacatt
     4201 tctttgctaa taaagtcaat gtcactaaat cacttgcttc gatttatcaa ttgattgttg
     4261 taccgctttt agggattacg attgttggtt tggcgatggt atttattatt gatacaccaa
     4321 tcgcttgggt tttaaatgca ctcacaggtt ggttgaatgg gcttggtgag acatctggcg
     4381 tcgtatttgg actactcatt ggtgtgatga tggcagcaga tatgggtggg ccaattaata
     4441 aatctatttc aaccttttca attgggttaa tgtcagcagg tgtaacggcg ccgattgcgg
     4501 cttgtatggc ggctggaatg gttccgccac ttggattagc actcgcaaca ctattattta
     4561 aaaacaaatt tacaaaagaa gaaaaaacag cgggaaattc ttgttgggtg ttaggtgcat
     4621 cttatattac tgaaggagca attcctttcg cagttgctga tccgctccgg gttatcccaa
     4681 gtttgatgtt aggttctgca acagctgctg caatttcgat gggagctggt gtaacttcga
     4741 tggcgcctca cggtggaatt tgggtgatgt tcattccaaa tgtaattaac catttattta
     4801 tctacttact agcaattgca gcaggcacag tcgtgacagc aatttctgtc ggactattaa
     4861 aaaccccatt aaacaagcga aaaaataaag aggagatgat ataatgttat atacaatgaa
     4921 agatctttta gcagtaggaa aagagcatca atttgcggta ccagcattta atatctgtag
     4981 ttttgatatg ttaaaggcga taatggagga agtggaggca aataatgctc ctgtaatttt
     5041 agaaattcat ccggatgaaa tagagtatct cggtgataac tttgttgcaa cagtcagaga
     5101 atacgcacat aaaagtaagg tgccggtcgt tattcatatg gaccacggtg gaacaatcaa
     5161 agatgtgatg cgggcaatta gaaatggcta tacttctgtc atgattgatg cttcaagagc
     5221 cagttacgaa gagaacgtgg cgttgactaa gcaagtggtt gaacttgcgc ataaagtcgg
     5281 tgtttctgtt gaagcggaac ttggaacaat cgggaacaat ggttcagcag aaggcggggc
     5341 ggataccatc atatatactg accctgacca agcagaagat ttcgtacaga gaactggcat
     5401 tgatacgcta gccgtagcta ttggaacggc gcatggttta taccctaaag ataaaaaacc
     5461 agaactgaat atgcctcttt taaaagaatt aaataaacgc ttggatattc cgtttgtact
     5521 tcatggtggt tcgggaaatc cagataaaga agtcagtgaa tctgtacagt acggtgttag
     5581 gaaagtaaac cttagttcag atctgaaaag tgtgtttttt gaagaagttc gccgcgtttt
     5641 agtggacaat cctgcgatgt atgaaccaaa tcaagtgtac ccatcagcaa atgaaaaagt
     5701 aaaagaagtt gtaagacata aattacacat tttaaatact actggtcaaa gagataaata
     5761 ctaataagaa gggtagaagc gctagttata gtgcttttgc cctttaagga gtggaggaac
     5821 atgttaagca cagcgaagga acggcaacta aaaatcgtta accggctaaa agtggaacaa
     5881 tttatgcgga ttattgattt agtggagctt gtcaactaca gcgaagccac tgttaaacgg
     5941 gatttagtag aattagaaaa agaaggactt gtgagacgaa caagaggcgg cgcaatgatt
     6001 atcgataata aaaaaatcga tttgccttat ttaatgaaaa tgaatgagcg aagtaatgaa
     6061 acgagtaaaa taagaattgc cgatattgcc aaatcactga ttcgcgatga tatggtgatt
     6121 ttcttagact ctagctcaac atcactgcat ttaatcgacg ttttaagtaa atttgatgga
     6181 ctgcaaatta ttacaaacgg ggtcatgacg gcttccatgc tatcagaatt tacaaatgca
     6241 agagttagta ttttaggagg atcgatttta acgaagcgat atacggtgaa cggcgcaaaa
     6301 gcatacaatg acgctttaac ttataatgcg gatattgctt ttgtttcatg ccgggggatc
     6361 gactatgaca aaggtgcaac ggaaacacat gaaggtgaag cactcatcaa acaagctttc
     6421 aggcgccagt caagttcgct cgttttactt gtcaccgaag aaaaagtagg acacaagttt
     6481 atgcaccaaa gcttagcatg tcatgatatt gactatttaa ttacggactt caaactggac
     6541 ccagatgtag aggaacagtt caaaacccat caaattactt gtttgtatta gattttatac
     6601 ttaaataggc aaaaataatc gtaagtacta aaaataaaac aggtatta
//
LOCUS       DASDXX010000147         6617 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.147, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000147 DASDXX010000000
VERSION     DASDXX010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6617
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.147"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(139..990)
                     /gene="prmC"
                     /locus_tag="U0280_002226"
     CDS             complement(139..990)
                     /gene="prmC"
                     /locus_tag="U0280_002226"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEM2272151.1"
                     /translation="MTQISQLLKNAEAILLEKGLDQNAAEILLETRMGLSRSELWMEI
                     SRELEPNHEKQFEEDFARYLAGEPVQYILKTAPFYGYDFLVTEDVLIPRPETEELVAC
                     AEDFLKKHPVKNVLDVCTGSGIIAIALKKAFPDISMTASDISAPALAVAKKNALLLNA
                     DVRFVETDLLEAFKQNEERFDMIVANPPYISEAEKAEMSDYVLKNEPSLALFAENDGL
                     AIYERFVDNLQYVLNSSFWVGVEIGYTQGERVKQLFEKSYPHSTVIIHKDINSKDRYV
                     TCSNILV"
     gene            complement(977..2053)
                     /gene="prfA"
                     /locus_tag="U0280_002227"
     CDS             complement(977..2053)
                     /gene="prfA"
                     /locus_tag="U0280_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEM2272152.1"
                     /translation="MYDRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITAT
                     VETYREYKNVNEQINETKELLGEKLDDEMREMAKEEFAELQKEKADLEERLKLLLVPK
                     DPNDDKNVILEIRGAAGGDEAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKE
                     IIAMMNGNDAFSRMKYENGAHRVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDK
                     DIRTDTFASTGAGGQSVNTTMSAVRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARV
                     YDKFEREAREEYDANRKSAVGTGDRSERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGK
                     LDEIIDALILEDQTSKLEHLNDAN"
     gene            complement(2076..2651)
                     /locus_tag="U0280_002228"
     CDS             complement(2076..2651)
                     /locus_tag="U0280_002228"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEM2272153.1"
                     /translation="MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRD
                     QVGFISSRIGLKREATPIFSDTNIFEIVANIKPKPNCVLLDESQFLEKEHVFQLAKIV
                     DELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAKKATMVLRVDDKG
                     KPVYTGEQIMIGGNDHYYPVCRKCHANPPIK"
     gene            complement(2763..3629)
                     /locus_tag="U0280_002229"
     CDS             complement(2763..3629)
                     /locus_tag="U0280_002229"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEM2272154.1"
                     /translation="MRIRVPATTANLGPGFDSCGLALTLYLTLDIGAEADSWYIEHNI
                     GGGIPHDETNVIIETALNLAPNLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLA
                     ELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVVGAKLDGEDFYVRHLFPDCALIAFIP
                     KAELLTSESRGVLPDTLPFKEAVQASSIANVMIAAILRNDMALAGEMMERDLWHEKYR
                     SQLVPHLTQIRDVAKSQGAYAACLSGAGPTVLVFAPRNLANTLQTSLQTLEIDADVLL
                     LDVEGSGAEVFR"
     gene            complement(3629..4684)
                     /locus_tag="U0280_002230"
     CDS             complement(3629..4684)
                     /locus_tag="U0280_002230"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEM2272155.1"
                     /translation="MYKGLLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVT
                     LYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAY
                     IVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNSVNPYRLE
                     GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEG
                     AAAIVQGKPIDNPETIATAIRIGNPASWELAEAARDESGGYIHSVTDDEIVNAYKKIA
                     AQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAMSVHEIPISH
                     VDDIEAMRTHLRSGVKA"
     gene            complement(4687..5973)
                     /locus_tag="U0280_002231"
     CDS             complement(4687..5973)
                     /locus_tag="U0280_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEM2272156.1"
                     /translation="MEAKLQVGVLGFGTVGSGVIHILEEHQEKISQVTGYHISVKKVL
                     VRDLEKNRRYETKGFELTTNPSDVLDDPEIAVVVEVMGSITTAREYILQALKAGKHVV
                     TANKDLIALHGDELVAVAQANNCDLFYEASVAGGIPILRTIVNSLAADKIQKVMGIVN
                     GTTNFMLTKMTTEKKSYEDVLAEAQALGFAESDPTNDVDGIDAARKMVIMTRLAFGMN
                     VNLDNVETNGIRGISPEDIDVAYQLGYKIKLVGTAEETNGTVNVNVGPVLLPKAHPLA
                     GVNYENNAVFVTGAAVGETMFYGPGAGELPTATSVVSDLITVAKNSRLGTNGNAFNSY
                     KHETKHTPKEQVFSKYYLRLTMDDKTGTFLKLTQIFAEAGVGFDKILQQPYDDFTATV
                     VIVTHSTSQAQLEQAIARVKDEPEMQMLAKYSVVEG"
     gene            complement(6195..6440)
                     /locus_tag="U0280_002232"
     CDS             complement(6195..6440)
                     /locus_tag="U0280_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEM2272157.1"
                     /translation="MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYP
                     LLRVEISSDSHPFYTGKQKHATADGRVDRFNKKYGLK"
     gene            complement(6542..>6617)
                     /locus_tag="U0280_002233"
     CDS             complement(6542..>6617)
                     /locus_tag="U0280_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell wall teichoic acid glycosylation protein
                     GtcA"
                     /protein_id="HEM2272158.1"
                     /translation="IWTNIIVLVLNYVFSKWIIFKVKK"
BASE COUNT         1817 a         1459 c         1178 g         2163 t
ORIGIN      
        1 tggataattc gtaaagctaa gtaaaaaagc cattttcttt attaagattt gattaaaaaa
       61 attttttgca caacatttta tccacagttt tgtggataac tttccaaaga aaaagacgct
      121 tcttttatag aaacgccttt ataccaatat attagaacat gttacgtagc gatcttttga
      181 attgatatct ttgtggataa taactgtaga atgtggataa cttttttcga ataattgttt
      241 tacacgctcg ccttgtgtat aacctatctc cacccctacc caaaaagagg aatttaggac
      301 atattgtaag ttatccacaa atcgttcata aatagcaagt ccatcatttt cagcaaataa
      361 tgctaatgaa ggttcgtttt ttagcacata atccgacatt tctgcttttt ctgcttcaga
      421 aatatagggc ggattggcga caatcatatc gaatcgttct tcgttttgtt taaatgcttc
      481 aagtaaatct gtttcgacaa aacgcacatc cgcatttaat aacaatgcat tctttttcgc
      541 cacggcaagt gctggagcag aaatatcaga agccgtcatc gaaatatcag gaaatgcttt
      601 tttgagcgca atcgcgataa tcccgcttcc ggtgcataca tctagtacgt ttttaactgg
      661 atgttttttc aaaaaatcct ccgcacaagc gactaactct tctgtttcgg gacgcggaat
      721 aaggacatct tctgtcacta aaaaatcata gccataaaaa ggtgctgttt ttaaaatata
      781 ctgcaccggc tcaccagcta agtatctagc aaaatcttcc tcgaattgct tttcatgatt
      841 tggttcaagt tcacgactta tttccatcca aagctcagaa cgcgaaagtc ccattctggt
      901 ttctagtaaa atttctgctg cattttggtc tagccctttt tcaagaagga tggcttcagc
      961 attttttagc aactgactaa tttgcgtcat ttaaatgctc caatttactt gtttgatctt
     1021 ctaggataag cgcatcaatg atttcatcga gtttaccttc cataatttga tctagctttt
     1081 gaatggttaa gccgatgcga tggtcggtta cgcggttttg cggatagttg taagtccgga
     1141 tacgttcgga gcggtcaccc gtacctacag ctgatttacg gttggcatca tattcttcgc
     1201 gagcttcacg ttcaaattta tcatatacac gtgcgcgtaa tactttcatc gctttgtctt
     1261 tattttttag ctgggaacgt tcatcttgca tcgatacgac aatcccggtt ggaatatgcg
     1321 ttagacgtac agctgacatc gtcgtattga cactttgtcc accggcacca gtagacgcaa
     1381 atgtatcagt gcggatatct ttatcgtgca gttcaatttc tacttcttcc gcttctggca
     1441 aaatggctac tgtcgctgtt gatgtatgga ttcgaccgcc tgattctgtt tctggtactc
     1501 gttgaacacg gtgcgccccg ttctcatatt tcattcggga aaaggcatca tttccgttca
     1561 tcatcgcaat aatttctttg taaccgccaa taccggtcgg gttcgcgtcc atgatttcta
     1621 ctttccagcc gcgtgattcc gcatatttgc tgtacatacg gaataaatcg ccggcaaata
     1681 aagctgcttc atctcctcca gctgctccac ggatttctaa aataacgttt ttgtcatcat
     1741 taggatcttt tggaacgagt aatagtttta gtcgttcttc taagtctgcc ttttcttttt
     1801 gaagttccgc gaattcttct ttggccattt cgcgcatttc atcgtctagt ttttctccta
     1861 ggagttcctt tgtttcgtta atttgttcgt tcacattttt gtattcgcgg tacgtttcga
     1921 ctgtcgccgt aatgccggat tgttctttgg aaaggtcgcg tagtcgtttt ggatccgata
     1981 ctacatctgg atcacttaat aactcattta gttcatcata acggtcttcc accgcctgta
     2041 atcgatcata cattgtattt caacacctct tttaattatt ttattggtgg attggcatga
     2101 catttgcgac acacagggta atagtggtca tttccgccaa tcataatttg ttcacctgta
     2161 taaactggtt ttcctttgtc atccacgcgc agaaccatcg ttgccttttt agcacaaaac
     2221 cagcaaattg ttttcatttc ttctagttta tctgcatata atagcaagta tttcgagcct
     2281 tcgaataatt catttcgaaa atcatttttt aaaccataag caataactgg gatatttaat
     2341 tcatccacaa ttttcgctaa ctgaaatacg tgttcttttt ctagaaattg cgattcatct
     2401 aaaagaacgc aatttggttt tggtttaata ttcgctacga tttcaaaaat atttgtgtca
     2461 ctaaaaatag gagttgcttc tcgtttcagt ccaattcgac ttgaaatgaa gccaacttgg
     2521 tctctatcgt caatacctga agtaaagata gccactgttt tattttgttc ttcataatta
     2581 tgtgcgactt ttagaatttc aatggttttc ccactattca tggaaccata acggaaaaat
     2641 aattgtgcca ttaagaccgc tccctttaac tttataaact cttttcctat tttatcatag
     2701 agcggcacaa attgggacat atagttaaaa aaagctacgc cgcatagggg catagcttga
     2761 ttttaacgaa aaacttctgc gccgctccct tcgacatcaa gaagaagaac gtctgcatcg
     2821 atttccagtg tttgtaaaga tgtttgcagt gtgttagcga ggtttcttgg agcgaatact
     2881 aagacagttg ggcccgcacc gctcaaacaa gcagcatagg ctccttggct ttttgcaaca
     2941 tcgcgaattt gtgttaagtg tggcactaat tgactgcgat atttttcatg ccataaatca
     3001 cgttccatca tttcaccagc tagcgccata tcattgcgta aaattgctgc aatcattaca
     3061 ttggcgatac tgctcgcttg gacagcttct ttgaatggaa gcgtatcagg caaaacaccg
     3121 cgactttccg aagtaagaag ttctgccttt ggaataaaag caattaaagc acaatccgga
     3181 aaaaggtggc gtacatagaa atcttctcca tctaatttcg ctcctacgac ccagtttcca
     3241 agaacagcag gcgcaacatt atcgggatgc ccttctattt cagcagctat ccgaactttt
     3301 tcctcttttg aaaggttaag ttcagcaagt gtattggcta attcaatccc cgcaacaacc
     3361 gctgcagaac tactaccgag tccacgagct ggcggtatat cacaggtcat cactaaatga
     3421 tgcggcgtta aattaggcgc caggtttaag gccgtttcga taattacatt ggtttcatca
     3481 tgcggaatcc cgccgccaat attatgttcg atataccaag agtctgcttc cgctccaata
     3541 tcaagcgtta aatataacgt taacgctaaa ccacacgaat caaagccagg gccaagattg
     3601 gccgttgttg ccggtacacg aatacgcatt aagctttcac tcctgaacgt aaatgtgtgc
     3661 gcattgcttc gatatcatcc acatgagaaa ttggaatttc atgcacactc atcgcagtat
     3721 ccggatcttt caagccgttt ccagtaaaga cacaaactac tgtttcgcct tttttaattg
     3781 ttccatttgc tacatgttgg atgacaccag ctaatgaagc ggctgaacct ggctcgataa
     3841 agacaccatc ttgtgctgca atttttttat acgcatttac aatttcatca tctgttacag
     3901 aatggatata tccgccagat tcatcgcgag ctgcttctgc aagctcccaa ctagctggat
     3961 ttccgatacg aatcgccgtt gcaattgttt ccggattatc aatcggttta ccttgaacaa
     4021 tcgcagccgc accttccgct tcaaaaccat gcatccgtgg aagtccagaa gccttggcct
     4081 cattccactc tttaaaccct ttccagtagg cagaaatgtt tccggcatta cctactggga
     4141 ttgcaaggac atctggagca gaacctaatt gctcacaaat ttcgaatgca gctgtttttt
     4201 gaccttctaa acgataagga tttaccgagt ttacaagagt tactgcttct gtttcagcca
     4261 gttcacgaac cgattttaac gcttcgtcaa aattaccttg aattgagata atatctgcgc
     4321 cgtacataac tgcttgcgct aattttccta gagcgacttt gccttctgga ataacaatgt
     4381 acgcttttaa tcccgcacgt gttgcgtatg ccgcagccgc agcagaagta ttcccagtgg
     4441 atgcacaaat aaccgcttcg gcaccttctt ctttcgcttt agcaacagcc ataaccattc
     4501 cacggtcttt aaaagaaccg gttggattta agccttcata ttttccgtat aaagtaacac
     4561 ccagttcttt ggacaaattc ggtaatggaa taagtggtgt atttccttcc gcaagtgaga
     4621 tcattggtgt tttatcagtt actggtagat attctttata tttttctagt aaacctttat
     4681 acatatttaa ccctccacaa cggaatattt tgcgagcatt tgcatttctg gctcatcttt
     4741 gaccctagcg attgcttgtt ctaattgtgc ttgactagtt gaatgtgtca cgataacaac
     4801 ggtcgccgta aaatcatcat acggttgttg caaaatttta tcaaaaccaa caccggcttc
     4861 tgcaaaaatt tgcgtcaact taaggaaggt tcctgtttta tcgtccattg ttagacgaag
     4921 atagtatttc gagaaaactt gttctttcgg tgtatgcttc gtttcgtgtt tgtagctgtt
     4981 aaaagcattc ccattagtac caagacggct atttttagca acggtaatta aatcactaac
     5041 cacactggtc gcagttggta attcgccagc accaggtccg taaaacattg tttctccgac
     5101 tgctgcacca gttacaaata cggcattatt ttcatagtta acacctgcaa gcggatgagc
     5161 ctttggtaat aaaaccggcc ccacgttgac attaactgtg ccgtttgttt cttccgccgt
     5221 acctactagt ttaattttat aacctaattg gtaagctaca tcgatatctt caggcgaaat
     5281 cccgcgaata ccatttgttt ctacattatc taaattcaca ttcataccaa atgcgagtct
     5341 tgtcataata accatttttc ttgcggcatc gattccgtct acatcatttg ttggatcaga
     5401 ttcggcaaaa cccagcgctt gtgcttctgc taaaacatct tcatatgact ttttctctgt
     5461 cgtcattttt gttagcatga aattggttgt cccgttgacg attcccatta ctttttgaat
     5521 tttatctgct gcaaggctgt ttacgatcgt acgtaaaatt ggaattccac ctgcaacact
     5581 tgcttcataa aacaaatcac agttattagc ttgtgcaact gccactaatt cgtcgccgtg
     5641 tagcgcaatc aaatccttat tcgcagttac tacatgcttt ccagctttca aggcctgcaa
     5701 aatgtattcc cgcgcagttg tgatgctgcc cataacctcg acaacaacag caatttctgg
     5761 atcatccagt acatcagacg gattggtggt tagttcaaaa ccttttgttt cataacggcg
     5821 atttttttct aagtcacgaa ctagcacttt cttaacagaa atatggtatc cagttacttg
     5881 actaattttt tcttgatgct cttctaaaat atgaataaca ccgctaccta ccgttccaaa
     5941 tcctaacaca cctacttgta actttgcttc cacttgaaaa cctccttatt attgtttaac
     6001 aaaacagaaa atttaacttt tttaatacct actcataaaa aaagtaatta gtgatattat
     6061 acgcaacttc acagggaaaa gtaaaccctt gaaaggaaag tttttatttt tagtagttct
     6121 gagaaataat tccataaaaa aacacaccca gcaaaagctg agtgcgcaaa ttatttcgtt
     6181 cgttacatac agtcttattt gagaccgtat tttttgttga agcggtccac acggccgtct
     6241 gcagtcgcat gtttttgttt accagtatag aacgggtgcg aatcagaaga gatttcgaca
     6301 cgtagtaatg gatactcgtt gccatcttcc catttaattg tttcgcttga gctcttagta
     6361 gaacctgaca aaaatttgaa atcagtacta gtatcaacaa ataccactgg acggtactca
     6421 ggatgaattc cagttttcat ttcttttcaa ctccttcgcc ctgaatcatc tgaaacagag
     6481 taattaagtg cttttacaca cagtatagat attataacaa tgttgaagca aacaagcaag
     6541 attatttttt cactttaaag attatccatt tgctaaacac gtagttcagt acaagcacaa
     6601 taatattggt ccagatt
//
LOCUS       DASDXX010000148         6592 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.148, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000148 DASDXX010000000
VERSION     DASDXX010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6592
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.148"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            52..801
                     /locus_tag="U0280_002234"
     CDS             52..801
                     /locus_tag="U0280_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM2272159.1"
                     /translation="MTAHKMLDEKFYSKSLGEELDLIICLPPDFSPLYKYPLFIVQDG
                     KDYFQFGKLARHSEELALNEQIQKAIFIGIPYKTVMDRREKYHPDGKQNDAYIRFLAF
                     ELVPYLEERFPSFQMPTSRFLMGDSLGASVSLKAALLFPFTFGNVILHSPYVDDTILT
                     LAEKVDPSKVKIFHIIGDRETAVETSGNEVLDFLSPNKSLEQILTTRGFDYYFHVFNG
                     DHRWKYWQPFIKDSLQFMLPVNTFDLESMRA"
     gene            819..1247
                     /locus_tag="U0280_002235"
     CDS             819..1247
                     /locus_tag="U0280_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272160.1"
                     /translation="MTVKKVTDDIGKQAALKIRNDVFVVEQHVDPALEWDEFDEIDSV
                     VMFVDYAEDGTPLATGRFREKDGYGKVERICTQKIARGTGSGRRIMEAIESEAKSRGL
                     TTLKLGAQVTAIPFYEKLGYETCSGLFLDAGIEHKEMKKH"
     gene            complement(1297..1971)
                     /gene="rpiA"
                     /locus_tag="U0280_002236"
     CDS             complement(1297..1971)
                     /gene="rpiA"
                     /locus_tag="U0280_002236"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEM2272161.1"
                     /translation="MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG
                     LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLR
                     EKMVASASLKNIWVVSEEKLVRNLGKFPLPIEVIPFGWKQIERTLEKEHVQTILRRQS
                     SGEIYVTNNGNYILDIVNQTFRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANGE
                     IELIKK"
     gene            2179..2325
                     /locus_tag="U0280_002237"
     CDS             2179..2325
                     /locus_tag="U0280_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HEM2272162.1"
                     /translation="MNKIKLILQHPATIFTMKTFFYLVVLLGLLWFYGFKNPEGAKFI
                     YNEF"
     gene            2362..3894
                     /gene="dltA"
                     /locus_tag="U0280_002238"
     CDS             2362..3894
                     /gene="dltA"
                     /locus_tag="U0280_002238"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HEM2272163.1"
                     /translation="MTTSIIERIDAWAEKTPDFPCYEYAGTRLSYKELKRQSDAFGSF
                     LLKNLNTDKEKPIIVYGHMSPLMLVAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADP
                     SLFICTEELPSNLTITGCPVLTQDQLMDALEKHFGEVPDKEACVKNDDNYYIIYTSGS
                     TGNPKGVQISQNNLVSFSNWILQDFSLSQGLRFLNQAPFSFDLSVMDLYPSLLSGGTL
                     VPLDKTITANMKDLYREIPAQNLDVWVSTPSFADLCLLDDNFNQENNPGLIRFLFCGE
                     VLAKKTASELLNRFPDAVIYNTYGPTEATVAVTQVKVTREVIDAYPSLPLGVIKPDMR
                     LHIVDQETGEVLPEGEKGEIVLIGASVSKGYLNEPEKTDQVFFDYKGYQAYRTGDSGI
                     IKDGYLFFQGRLDFQIKLHGYRIELEDIENNLKKVSYIQNCAIIPKMKDEKVDMLVAQ
                     VIPTNHDFEKEYQLSAAIKNELKEFMPAYMIPRKWIYKTEFPLTMNGKIDRKALNSEV
                     NK"
     gene            3891..5075
                     /gene="dltB"
                     /locus_tag="U0280_002239"
     CDS             3891..5075
                     /gene="dltB"
                     /locus_tag="U0280_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HEM2272164.1"
                     /translation="MSLPYGTILYFGVLVLFLIPIIVAGLLGKRLPIYNAFVTLVFLY
                     FMFSASPVQGATFIFFVFWQLALVRLYFHYRQEKKQNHGGVFVIAVILSILPLIISKV
                     VPILGDNVTMVGFLGISYLTFKAAQMIIEIRDNLIKQYNAWDFVNFLLFFPTISSGPI
                     DRFRRFKKDVDNPPSKEAYLALLNRGIFLIFLGFLYKFIIAYLVNKHFVVPLDIAITH
                     HVDTTKSLIGYMYAYSMYLFFDFAGYSAFAVGVSYLLGVQTPMNFNKPFAARNIKEFW
                     NRWHMTLSFWFRDYVFMRFVFWVTKKKWFKSKFTIAYLAYFVNFFIMGVWHGLHWYYI
                     VYGLYQATLIVGFDLFERFNKKHKFYPKNKITYVIGVFITFQFVCFGFLIFSGILDKI
                     NF"
     gene            5101..5337
                     /gene="dltC"
                     /locus_tag="U0280_002240"
     CDS             5101..5337
                     /gene="dltC"
                     /locus_tag="U0280_002240"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HEM2272165.1"
                     /translation="MAFRENVLEILEEITETDEVVQNTNIKLFDEGLLDSMATVQLLI
                     EIEEKLDITVPVSEFDRDEWATPEMIITQLEALK"
     gene            5337..>6592
                     /gene="dltD"
                     /locus_tag="U0280_002241"
     CDS             5337..>6592
                     /gene="dltD"
                     /locus_tag="U0280_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HEM2272166.1"
                     /translation="MKKKLWMTFGPLLVAFAVFLFVLFGPSSLFSKVSSETVEKSATS
                     MNESVIQGLDIQKKALQEGNYLPIYGSSELSRVDPFHPSVVSKKYNQGYTPFLLGRPG
                     TQSLSHFLDVNALGDDLKGKKVAVVLSPQWFQPKGVSDPSFGANFSPLHAYKFALEDT
                     KNTPERRYAAKRLLSFQVVQSDSTLKKLLENIVAKGPKKPHDPKLLNITGNIELKILE
                     RKDDLESKYIIGSKQDRVNKGLKELPETLDYQKLDELAKETGERSTGNNPFQVKEHYY
                     QKKIKPIEGKLKNSRKDLRYDQSPEFADLQLLMDAFKKAGADVIFINPPINGKWIDYI
                     GMDKQGLDDYYAKTKEQIESQGFRYYSLEEYQNDAFFLEDPIHLSWRGWVKIDQVLAD
                     FVKEPMQTNYKPTPKEYYFKEHPENGP"
BASE COUNT         2157 a         1257 c         1116 g         2062 t
ORIGIN      
        1 caaaaaacaa tcccctatga aggaatgatt tcaagaaagg agagaatgaa aatgacagct
       61 cacaaaatgt tagatgagaa attttatagt aaatcgctag gagaggaact tgatttaatt
      121 atctgcttac cacctgattt ttctccacta tacaaatatc cacttttcat tgtacaagat
      181 ggtaaagatt attttcagtt tggcaaactt gcgcgtcact ccgaagaatt agcgctaaat
      241 gagcagattc aaaaagccat tttcattggt atcccataca aaactgttat ggatcgtcgc
      301 gaaaaatatc atccggacgg taaacaaaac gatgcatata tcagattttt agcatttgaa
      361 ctcgttcctt atcttgaaga acgctttcct tctttccaaa tgcctactag tagattcctg
      421 atgggagatt cactcggggc atccgtttct ttaaaggcag ctcttctttt tccctttaca
      481 tttggtaatg tgattttaca ttccccctat gtggatgaca caatccttac acttgcagaa
      541 aaagtagacc cttcaaaagt gaaaatcttc catattatcg gtgaccgaga aactgcagtc
      601 gaaacatccg gaaatgaagt gctcgatttc ctatcaccaa ataaatcttt agagcaaatt
      661 ttaaccactc gcggatttga ttattatttc catgtattta acggtgatca tcgctggaaa
      721 tactggcagc catttatcaa agattcttta caatttatgc taccagtgaa tacatttgat
      781 ttagaaagca tgcgcgcata agaaaggacg gaaacaactt gaccgtaaag aaagtaacag
      841 atgatattgg caaacaagcc gcacttaaaa ttagaaatga tgtttttgtc gttgagcaac
      901 atgttgatcc agcattagaa tgggatgaat tcgatgaaat agattctgtt gtaatgtttg
      961 ttgattatgc agaagatggc acaccgcttg caaccggtag attccgcgaa aaggatggtt
     1021 atggtaaagt cgaacgcatc tgtacccaga aaatagctcg cggcactggg agcggccgga
     1081 gaatcatgga agccattgaa tccgaagcta agtctcgtgg cttaacaacc ttaaaattag
     1141 gagcccaagt aactgctatt cccttctatg aaaaattggg atacgaaact tgctcgggat
     1201 tgttccttga tgctggaatt gaacataaag aaatgaaaaa acattaacat aggaaattta
     1261 ataaaaatag ttatttcttt tatatagaag aaataactat ttttttatta gctctatttc
     1321 gccatttgcc ttcgcacaaa caattatatc cacataatga agaaataatc catgctccac
     1381 aatccctgga atttgcgcta atttttcttg ccacatttct gcatccctaa aagtttgatt
     1441 tactatatcc aaaatatagt tcccgttatt tgtcacatag atttctcctg aagattgtct
     1501 ccgtaaaatt gtttgaacat gctctttttc aagtgttctc tcaatttgct tccaaccaaa
     1561 aggtattact tctataggca aaggaaactt ccctaagttt cttacaagct tctcctcact
     1621 gacaacccaa atgtttttca aactcgcact tgctaccatt ttttcacgta atagtgctcc
     1681 tcctccacct tttattcctt gaaaatccgt atcaatttca tcagcaccat caatagtaat
     1741 atctatttcc gctacgtcat ttagcgattt caaaggtatt cctaaatttt gtgcttgttt
     1801 gcttgtttct tcagaagttg ccacccctgt aatatgcaaa ccattattta ccatttctcc
     1861 aagcttttca atcgtgtaat agactgtact gcccgttcca aggcccacaa ccattccatc
     1921 tttaatccac tcacaagcct tttctcctgc tatcttcttt tgattaatca tattccaacc
     1981 tcttttctag cattaaaaca ttactatatc tattgtttca ttatactcgt acctactttc
     2041 aagttcaaaa tatgcatatt ttcctaacct tacaaaaatg taattagaca tttaaagaca
     2101 aatgtattac agtaagtaag tattaaacgt ttatttttaa tatttgtaac acaaatgaaa
     2161 taataaagag gtggatttat gaataaaata aaactcattt tgcaacatcc agcaactatt
     2221 tttacaatga aaactttttt ctaccttgtt gttttgctag gattgctttg gttttatggt
     2281 ttcaaaaacc ctgaaggtgc gaaattcatt tacaatgaat tctaaaagaa gaaaggactg
     2341 ttaaaaatgg gaatatcaat aatgacaacg agtatcatag aaagaattga tgcatgggca
     2401 gagaagacac cggatttccc ttgctatgaa tatgctggaa cacgtctttc ctataaagaa
     2461 ctaaaacgac aatctgatgc attcggctct tttctactaa aaaacctaaa tactgacaaa
     2521 gaaaaaccta ttatcgttta cggacatatg tctcccctaa tgctagttgc atttttaggc
     2581 tctatcaaat caggtcgagc ttatgtacca gtagatgttt ctatgccagt tgaacgtata
     2641 gaacaaatta aaaaagcagc tgatccttct ttgtttattt gtacagaaga gctacctagt
     2701 aaccttacta ttactggttg tccggtacta acacaagatc agctaatgga cgccttagag
     2761 aaacatttcg gagaagttcc agataaagaa gcatgtgtaa aaaatgatga taactactat
     2821 attatttaca catccggaag tacaggaaat cctaaagggg ttcaaatcag tcaaaacaat
     2881 ctagtaagtt ttagtaactg gatattacaa gacttttctt taagccaagg attgcgtttc
     2941 ttaaaccaag cacccttttc cttcgatcta tccgttatgg atttatatcc aagtttacta
     3001 tcgggtggaa cgcttgtacc tcttgataaa acaattactg cgaatatgaa agatttatat
     3061 cgtgaaatac ctgctcaaaa cttggatgta tgggtttcta ctccttcttt tgctgatttg
     3121 tgcttactag acgataactt taaccaagaa aataaccctg gcttaattcg tttcttattc
     3181 tgtggtgaag tacttgccaa gaaaacagca agcgaattgc tgaatcgttt cccagatgca
     3241 gttatttaca acacatacgg acctacagaa gcaaccgtgg ctgtcactca agtaaaagta
     3301 actcgagagg ttatcgatgc ttatccaagc ttaccacttg gcgttattaa accagatatg
     3361 cgtttacaca tcgttgacca agaaactggt gaggttcttc cagaaggcga aaaaggagaa
     3421 attgtcctga ttggtgctag cgtttctaaa ggttacttaa atgaacctga aaaaacagac
     3481 caagtattct tcgactataa aggttatcaa gcttatcgca caggagactc tggcattatc
     3541 aaagacggtt atctgttctt ccaaggacgt cttgacttcc aaattaaact gcatggttat
     3601 cgcatcgaat tagaagatat cgaaaacaac ctaaaaaaag taagttacat tcaaaactgc
     3661 gctattattc ctaaaatgaa agatgaaaag gtagatatgt tggtcgcaca ggtcatccct
     3721 actaaccatg atttcgaaaa agaataccag ctaagtgcag caataaaaaa tgaactgaaa
     3781 gaatttatgc cagcatacat gatcccaaga aaatggattt acaaaacgga attcccgtta
     3841 actatgaatg gcaaaatcga tcgcaaggcg cttaatagcg aggttaacaa gtgagtttac
     3901 catacggcac aatcctttat tttggagtac ttgtactatt tttgattcct atcatagtag
     3961 ctggtttgtt aggaaaaaga ttaccgattt ataatgcttt tgtgacactc gtatttttat
     4021 actttatgtt ctcagcaagt ccagtccaag gagctacttt tatcttcttt gtcttctggc
     4081 aacttgctct tgtacgactt tacttccatt acaggcagga gaaaaagcag aaccacggcg
     4141 gcgtattcgt catagcagtg attctgtcta ttctccccct tattatctct aaagttgttc
     4201 caattttagg agacaatgtt acaatggttg gtttcctagg gatttcctac ttaacattta
     4261 aagcggcaca aatgattatt gaaatacgcg ataacttaat taaacagtat aacgcgtggg
     4321 attttgttaa tttcttacta ttcttcccga ctatatcatc cggaccgatt gaccgattcc
     4381 gtcgctttaa aaaagacgtg gataatccgc ctagtaaaga agcttatcta gctttattaa
     4441 atcgaggaat attccttatc ttccttggtt ttctctacaa attcattatc gcttacttag
     4501 taaacaaaca ttttgttgtt ccactagaca tcgcgattac acaccatgta gacacaacaa
     4561 agagtttaat tggttatatg tatgcctata gtatgtattt attctttgac tttgcaggtt
     4621 acagtgcctt tgcagttggg gttagttact tactcggcgt tcaaacacct atgaacttta
     4681 acaaaccttt cgcagctcgc aatattaaag agttctggaa tcgttggcat atgacgcttt
     4741 ctttctggtt ccgcgattat gtattcatgc gtttcgtatt ttgggttaca aaaaagaaat
     4801 ggtttaaaag taagttcact attgcctacc tagcatattt cgttaacttt ttcatcatgg
     4861 gtgtatggca tggacttcat tggtattaca tcgtttatgg cctttatcaa gcaacactaa
     4921 ttgttggatt tgacctattc gaacgcttta acaagaagca caaattctat ccaaaaaaca
     4981 aaattactta tgtaatcggc gttttcatta cattccaatt tgtttgtttc ggattcctga
     5041 tattctcagg tattttagat aaaattaatt tttaaaacta actaaaggtg gtaatttata
     5101 atggcttttc gtgaaaatgt attagaaatc ttagaggaaa ttacagaaac ggatgaagta
     5161 gtacaaaata caaatattaa attatttgat gaaggcttgc ttgattctat ggctacggtt
     5221 caacttttaa ttgaaattga agaaaaatta gatatcactg tacctgtttc cgaatttgac
     5281 cgcgacgaat gggctactcc tgaaatgatt attacacaac tcgaggcgct aaaataatga
     5341 aaaaaaagct gtggatgaca tttgggcctt tactggtcgc attcgcggtt ttccttttcg
     5401 ttctattcgg acctagtagc ttattctcta aagtttcttc tgaaaccgta gagaaaagcg
     5461 ctacatcaat gaacgaatcc gtcatccaag gcttagacat ccagaaaaaa gctttacaag
     5521 aaggaaacta tttaccaatt tatggttctt cagagctttc ccgcgtcgac ccatttcatc
     5581 ctagcgtagt ctcaaaaaaa tacaatcagg gctatacacc atttttactt ggtcgcccag
     5641 gtacacaatc attaagtcat ttcttagacg taaatgcact tggtgatgat ttaaaaggaa
     5701 aaaaagtagc ggtagtttta tctccacaat ggttccaacc taaaggcgtt tctgacccat
     5761 catttggtgc caatttttcc cctcttcatg catataaatt cgcattagaa gatacgaaaa
     5821 atacgcctga acgtcgctat gcagctaaac gtttattatc tttccaagta gttcaaagtg
     5881 actctacatt aaaaaaatta ctcgaaaaca ttgtcgcaaa agggcctaaa aaacctcatg
     5941 atccaaaact tctaaacatt actggtaata tcgaactgaa gattttggaa cgtaaagatg
     6001 atttagaatc aaaatacatc attggttcca aacaagatcg cgtaaacaaa ggcctaaaag
     6061 aacttccaga aactttagat taccaaaaac tagatgaatt ggctaaagaa actggggaga
     6121 gaagtactgg taataaccct tttcaagtca aagaacatta ttaccaaaag aaaatcaaac
     6181 caattgaagg taaattaaaa aatagccgca aagatttacg ttatgaccaa tctcctgagt
     6241 ttgctgattt acagctacta atggatgctt tcaaaaaggc tggtgcagat gtcattttca
     6301 ttaacccgcc tatcaatgga aaatggattg attacattgg tatggacaaa caaggtttag
     6361 atgactatta tgctaaaaca aaagaacaaa ttgagagtca aggtttccgt tactactctc
     6421 tagaagaata tcaaaatgat gcttttttct tagaagatcc gattcattta agctggcgcg
     6481 gttgggtaaa aatcgaccaa gtattagcag acttcgttaa agaaccaatg caaacaaact
     6541 ataaaccaac accaaaagaa tattacttta aagaacatcc agaaaatgga cc
//
LOCUS       DASDXX010000149         6509 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.149, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000149 DASDXX010000000
VERSION     DASDXX010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6509
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.149"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            122..601
                     /locus_tag="U0280_002242"
     CDS             122..601
                     /locus_tag="U0280_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272167.1"
                     /translation="MAIGDNIRKFRKLKGMTQKELGLALGFDKKTADIRIAQYESGTR
                     KPKEDMINDLSKIFDIRTDALTTPNIDSYVGLMHTLFSIEDTYGLKIIDGDDGISLKL
                     DKNSKSFHTLYDSFLSWQKEAEKFENEEITLEEYNHWRFNYPKVEAEKTKSKRDQSK"
     gene            complement(800..2356)
                     /gene="guaA"
                     /locus_tag="U0280_002243"
     CDS             complement(800..2356)
                     /gene="guaA"
                     /locus_tag="U0280_002243"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEM2272168.1"
                     /translation="MFKIMKDFTEQEKIIVLDFGSQYNQLITRRIREFGVYSELHPHT
                     ITVEEMKALNPTGIIFSGGPNSVYDEDAFRADERIFDMGIPILGICYGMQLMTTHFGG
                     KVERAKDREYGKADIHVEKPNRLFAGLPTDQVVWMSHGDLVVEEPAGFEVTITSKSCP
                     IAGIADEERSLYGVQFHPEVRHSVYGNELLKNFALNVCGCKGDWTMENFSEVEIAKIQ
                     EIVGDKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIFVDHGLLRKGEADQVMATLQGE
                     FNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEFLAQGTLY
                     TDIIESGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTELGMPDAIVW
                     RQPFPGPGLGIRVLGEITEEKLEIVRDSDYILREEIKNAGLEREIWQYFTALPNIRSV
                     GVMGDGRTYDHTVVVRAVTSIDGMTADWARIPWDVLEKISVRIVNEVDHVNRVVYDIT
                     SKPPATVEWE"
     gene            complement(2485..2889)
                     /locus_tag="U0280_002244"
     CDS             complement(2485..2889)
                     /locus_tag="U0280_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2272169.1"
                     /translation="MKTLMIVCAGGATSSLMAQNVVKSATSEGMDAVLLFPDDVKYKD
                     SFREKYSERDLVVVMGPVGAITAGKFRDYKEQVDAVLVAPQVKYMYKTVEEVLGELSI
                     PCANIDSLDFGRMRGDKILTQGLALMDAKNSK"
     gene            complement(2949..3257)
                     /locus_tag="U0280_002245"
     CDS             complement(2949..3257)
                     /locus_tag="U0280_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2272170.1"
                     /translation="MKVGYGLLTAFYTHPGEKDNLVKILLEAAEGLDDYNTCIQYIVS
                     ESETEPDTVFVSEIWVDKGHHAASLDNPAVQETIARAKPMIKEIKQIQELDILGGKGI
                     "
     gene            complement(3270..4094)
                     /gene="nadE"
                     /locus_tag="U0280_002246"
     CDS             complement(3270..4094)
                     /gene="nadE"
                     /locus_tag="U0280_002246"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HEM2272171.1"
                     /translation="MEIRERILADMQVAETIDAHEEIRKSVEFLKAYLKKNTFLKSFV
                     LGISGGQDSTLTGKLAQMAISEMRAETGDDQYQFFAVSLPYGTQLDESDRQDALNFME
                     PDNRLTVNIKASVDASVAALAEAGVELSDFAKGNEKARERMKVQYAIAAMHKGVVVGT
                     DHSAEAVTGFYTKYGDGGTDINPLFRLNKRQGKALLKELGCPEHLYLKKPTADLEDNK
                     PALPDEVALGVTYDQIDDYLEGKEVPADAAAKIENWFIKTEHKRHMAITIFDDFWK"
     gene            complement(4106..5596)
                     /locus_tag="U0280_002247"
     CDS             complement(4106..5596)
                     /locus_tag="U0280_002247"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEM2272172.1"
                     /translation="MTNLFQDDSLTLHTDLYQLNMMKAYFDDGLHERRSVFEVFFRDM
                     PFDSGFVVFAGLERIIHYMQNLRFTETDIAYLHDELGFEGPFLEYLRNFKFKGNILAA
                     KEGEFVFKTEPILQVEASLAEAQLIETALLNIVNFQTLIATKAARIRSVIDDETFAEF
                     GTRRAQEMDAAIWGTRAAYIGGCDSTSNVRAGKIFGIPVSGTMAHAMVQAYRDELEAF
                     RSYAKTHFDSIFLVDTYDTLKSGVPNAIKVAKEMGDKINFIGIRLDSGDMAFLSKKAR
                     QMLDEAGFTEAKIFASSDLDEHTILSLKAQKAKIDSWGVGTKLITAYDQPALGAVYKM
                     AAIADENDILQDSIKLSSNTEKVSTPGKKKVYRIITNEDGLKAEGDYIALADESLENV
                     DKLTMFHPVHTYIMKTVENFTARELLVPIFQNGELVYDMPSLDEIKAYKEENLALLWD
                     EYKRTVRPEQYPVDLSVKCWKNKMRNIEKVRKSVQLHSPVELDMPF"
     gene            complement(5714..6097)
                     /gene="tagD"
                     /locus_tag="U0280_002248"
     CDS             complement(5714..6097)
                     /gene="tagD"
                     /locus_tag="U0280_002248"
                     /EC_number="2.7.7.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate cytidylyltransferase"
                     /protein_id="HEM2272173.1"
                     /translation="MKKVITYGTFDLIHWGHIRLLERAKALGDYLIVAISTDEFNRIK
                     HKEAYHNFEHRKLILEAIRYVDEVIPESNWEQKLEDVKNRDIDIFVMGDDWEGEFDFL
                     KPYCEVVYLPRTDGISTSKIKDDLK"
     gene            complement(6162..>6509)
                     /locus_tag="U0280_002249"
     CDS             complement(6162..>6509)
                     /locus_tag="U0280_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2272174.1"
                     /translation="VYADKETPIETILPAVDILITDYSSIPFEFALLEKPMIFFTYDL
                     EEYDKARGLSDGFLATIPGPFVHTTEELIQLIEQEAFDLEMVRAFAAKWNKYSDGHSS
                     ERFVSFLKEQLEK"
BASE COUNT         1877 a         1426 c         1087 g         2119 t
ORIGIN      
        1 atattatact aaacattttt gtttaagtaa agtgaaatta aacttttttg tttagttttt
       61 attgattttg ctttctattt gttttataat caacttaaca aatatgttta ggagtggtaa
      121 catggcaatt ggagataaca taagaaagtt tcgtaagctc aaaggtatga ctcaaaaaga
      181 attaggttta gctctaggct ttgataaaaa aacagctgat attcgtattg cacaatatga
      241 aagtggaaca agaaaaccaa aagaagatat gattaatgat ttatcaaaaa tttttgatat
      301 tcgtaccgat gctcttacta caccaaatat tgatagctat gtcggtctta tgcatacctt
      361 attttcaatt gaggatactt atggtttaaa gattatagat ggtgatgatg gcatttcttt
      421 aaagcttgat aaaaattcaa aatcattcca cactctgtat gattcttttc tttcttggca
      481 aaaagaagct gagaaatttg agaatgaaga aataactttg gaagaataca atcactggcg
      541 atttaattat ccaaaagtag aagcagaaaa aacaaaatca aaacgagatc agtcgaaata
      601 aaaacgcaaa aaaaagctcg tcaattttcg acaaagcctt tcatatagaa aattatttta
      661 atgaatgata ttactaaaat ttgatagaat attatccgta aaattactac gataatataa
      721 actgttatca aactgttatc actcgacata gaaaaagccc taaaacctca tcattactga
      781 ggttttaggg ctttgtttac tattcccact caaccgtagc tggtggttta ctcgtaatat
      841 cataaacaac acgattcacg tgatccactt cattcacaat ccgtaccgaa attttctcca
      901 gtacatccca cggaatacgt gcccaatcgg ctgtcatacc atcaatactc gtcaccgcac
      961 gaacaaccac agtatggtca tacgttctgc catcacccat aacaccaacg ctacggatat
     1021 ttggaagagc agtaaagtat tgccagattt cgcgttctag acctgcgttt ttgatttctt
     1081 cacgcaagat gtaatcagaa tcgcggacaa tctctaattt ctcttccgta atttcgccaa
     1141 gaacgcggat tcctaagcct gggcctggga atggttggcg ccaaacgatt gcgtcaggca
     1201 tgccaagttc tgttcctagt gcgcgaactt catctttgaa aagtgtattt aatggttcga
     1261 ttagtttaaa ttgcatatct tctggtaagc cgcctacatt gtggtgagac ttgattgttt
     1321 gggcagttgc tgtaccactt tcgatgatgt ctgtgtaaag tgttccttga gctaggaatt
     1381 ctacgccgtc tagtttgtta gcttcatcgt cgaatacgta aatgaattcg ttaccgatga
     1441 ttttacgttt ttgctctggg tcagaaacgc cagcaagttt gtccatgaag cgttttttcg
     1501 catctacttt gatgatgttc atgttgaatt cgccttgtaa tgttgccatt acttggtcag
     1561 cttccccttt gcgaagaagg ccatggtcta cgaaaataca agttagttgg tcgccgattg
     1621 ctttatgaat taacacacca acaacagagg aatctacgcc gccagaaagg gcaagcaaga
     1681 cttttttgtc gcctacgatt tcttggattt tagcgatttc tacttcacta aagttctcca
     1741 ttgtccagtc gcctttacag ccacaaacat ttaatgcaaa attcttcagt aattcgttgc
     1801 cgtaaacaga gtgacgtact tctgggtgga attgcacgcc gtaaagtgaa cgttcttcgt
     1861 ccgcaatacc tgcaattggg caagatttac tagtaattgt tacttcaaaa ccagcaggct
     1921 cctcaacgac taaatcgccg tgactcatcc aaacaacttg atcggttggt agtccagcaa
     1981 ataaacggtt tggcttctca acgtgaatgt ccgctttccc gtattcgcgg tctttcgcac
     2041 gttctacttt gccaccgaag tgcgttgtca ttaattgcat gccgtaacaa attcccaaaa
     2101 tcggaattcc catgtcaaag attctttcgt cagcgcggaa ggcatcttcg tcatacacac
     2161 tgttaggtcc tcctgaaaaa ataatccccg ttggatttag tgctttcatt tcttcaactg
     2221 taatagtatg cggatgtaat tcactataca caccgaactc acgaatgcgg cgcgtaatta
     2281 gttgattgta ctgactacca aaatctagaa cgataatttt ctcttgctcg gtaaagtctt
     2341 tcataatttt aaacaaaacc acccttatct ataaaatgaa accgcaaaat cgcggttact
     2401 tcacaataat ataagaaaag gacaaatcac ttgtcctttt catcttcttt cattttaacg
     2461 tttcccctct aaagttgcaa caccttattt ggaatttttc gcatccatta aggctagacc
     2521 ttgcgtgaga atcttatctc cacgcatccg accgaaatcg agtgaatcaa tattagcgca
     2581 aggaatactt agttcgccta atacttcctc cactgttttg tacatatatt tcacttgtgg
     2641 tgctactaaa accgcgtcaa cctgttcttt ataatcacgg aatttcccag ctgtaattgc
     2701 gccgactggt cccatcacga caaccaaatc ccgctcgctg tatttttcac gaaaactatc
     2761 tttatatttc acatcatctg gaaatagtag aacagcgtcc attccttctg acgtcgcgct
     2821 tttcacgaca ttttgcgcca ttaaactcga cgtcgcacca ccagcacaaa caatcatcaa
     2881 cgttttcatt tctcatccct ccaaaaaatg attccaggag agccccagaa tcattcttgt
     2941 tgttaaaatt atatgccttt tccaccgagt atgtctaatt cttgtatttg ttttatttct
     3001 tttatcatcg gttttgcgcg tgcaatggtt tcttgtacag ctgggttatc aagtgatgct
     3061 gcatgatgcc ctttgtcgac ccaaatttca gaaacaaaca ccgtgtctgg ctcggtttca
     3121 gattcgctga caatatactg aatacacgtg ttgtaatcat ccaatccttc agccgcttca
     3181 agcaaaattt tcactaaatt atctttttct cctggatgtg tataaaatgc agttaataaa
     3241 ccataaccaa ctttcattta aacagcctcc tatttccaga aatcgtcaaa tatagtaatt
     3301 gccatatggc gtttatgttc ggttttaata aaccagttct caatttttgc tgcagcatct
     3361 gctggaactt ccttaccttc caagtaatcg tcaatttggt cataagtcac accaagcgcg
     3421 acctcatcag gaagtgccgg tttattatct tctaaatctg ctgtcggttt tttcaaatat
     3481 agatgttctg ggcagccaag ctctttaaga agcgccttgc cttgtctttt attcaagcga
     3541 aatagtggat taatatccgt tccaccgtcg ccgtatttcg tataaaagcc agtaactgct
     3601 tctgcggagt gatcggttcc aactactacg cctttatgca tcgctgcaat tgcgtattgt
     3661 actttcatcc gttcgcgcgc tttttcgtta cctttagcga aatcagatag ttccactccc
     3721 gcttccgcaa gcgccgcaac actcgcatcc actgaagctt taatatttac ggttaaacga
     3781 ttatctggtt ccataaagtt cagtgcatct tgacggtccg attcatctag ttgcgttccg
     3841 tatggcaagc tcacagcgaa gaattggtac tgatcgtcac ccgtttctgc tcgcatttcg
     3901 cttatcgcca tctgtgctag ttttcctgtt aaagtcgaat cttgtccccc agaaatccca
     3961 agaacaaagc tttttaagaa cgtattcttt tttaaatatg cttttaaaaa ctcgacactt
     4021 tttcggattt cttcgtgtgc atcaatcgtt tctgccactt gcatatctgc taaaattctt
     4081 tctctgattt ccattataat tcctcctaaa acggcatatc tagttcaact ggtgaatgaa
     4141 gctggacact tttacgtacc ttttcgatat tacgcatctt atttttccaa cattttacac
     4201 ttaaatcaac tgggtattgc tccggacgaa ctgttcgttt gtactcgtcc caaagtagcg
     4261 ccaagttctc ttctttatat gctttaattt catctagtga aggcatatca tatacaagtt
     4321 ctccgttttg gaaaatcggt acaagtagct cacgcgcggt gaagttctcg actgttttca
     4381 taatatacgt atgaactggg tggaacatcg ttagtttatc cacattttcg agtgattcgt
     4441 ccgctaaagc aatataatcg ccttccgctt tcaagccatc ttcattcgta ataatccggt
     4501 aaactttctt tttaccagga gtcgacactt tttcggtgtt actcgaaagt ttaatcgaat
     4561 cttgtaaaat atcattttca tcagcaattg ccgccatttt gtaaacggca cctaatgctg
     4621 gttggtcgta agcggtgatt agttttgtgc caacgcccca agaatcgatt tttgcttttt
     4681 gcgcttttaa cgataaaata gtatgttcgt ctaagtcact cgaagcaaag atttttgctt
     4741 ctgtaaaacc agcctcatct aacatttggc gtgctttttt agataagaaa gccatatccc
     4801 cgctatctaa acgaatgccg ataaagttaa ttttatcgcc catttctttc gccactttaa
     4861 tcgcatttgg tacgccagat tttagcgtat cgtatgtatc tactaagaaa atcgaatcaa
     4921 aatgcgtttt tgcgtaactt ctaaatgctt ctagttcgtc gcgataagct tgaaccatcg
     4981 catgtgccat cgtaccagac acaggaatac cgaaaatttt tccagcgcga acattactcg
     5041 tcgaatcaca accgccgatg taagccgctc gtgtgcccca aatagccgca tccatttctt
     5101 gtgcacgtct tgtaccgaat tctgcaaacg tttcgtcatc aataacagaa cggattcgcg
     5161 ccgcttttgt tgcaatcagc gtttggaaat tcacaatatt aagcaaagct gtttcaatta
     5221 attgtgcttc cgccaagctt gcttctactt gaaggattgg ctctgtttta aaaacaaatt
     5281 ccccttcttt cgcagcaaga atatttcctt taaatttaaa attacgtaaa tattctagaa
     5341 aaggtccttc aaaaccaagt tcgtcgtgta aataagcaat atccgtttct gtaaaacgta
     5401 aattttgcat ataatgaata attcgttcta gccccgcaaa cacaacaaaa cccgaatcaa
     5461 atggcatatc tcggaaaaac acttcaaata ccgatctacg ctcatgaagt ccatcgtcaa
     5521 aatacgcttt catcatattt agttgatata agtctgtatg cagcgttaga ctatcatctt
     5581 gaaataaatt tgtcatttct tctgctccta tcataactag ttctttgcgt tattatttat
     5641 acataataat agcacaaaac aagcccacca cctaataatt gaacattact ggtctgcctg
     5701 ttttgtgcta cgactatttt aaatcatctt taatcttaga agtagaaata ccgtctgttc
     5761 gtggtaaata aacgacttca caataaggtt ttaagaagtc aaactcgcct tcccaatcat
     5821 cacccatcac aaaaatatca atatcacgat ttttaacatc ttctaatttt tgttcccagt
     5881 tactttccgg aatcacttcg tcgacatatc taatcgcctc taaaattaat ttgcgatgtt
     5941 caaagttatg gtatgcttct ttgtgtttga ttcgattaaa ttcatcggtt gaaatggcta
     6001 caataaggta atcacctaaa gcttttgctc gttctaataa acgaatatgc ccccagtgaa
     6061 tcaaatcaaa tgtgccatat gtaattactt tcttcatcag cccacctact ttctttagta
     6121 gtatatcaag aaaacaaaaa tttctctact tgttagcagt gctacttttc tagctgttct
     6181 ttcaaaaagg aaacgaagcg ctcactagaa tgcccgtctg aatatttatt ccatttcgcc
     6241 gcaaaagcac gaaccatttc taaatcgaat gcttcttgct caattagttg tattagttcc
     6301 tctgttgtat gaacgaatgg ccccggaatc gttgctaaaa agccatccga caaacctcta
     6361 gccttatcat attcctctaa atcatacgtg aaaaagatca ttggtttttc taataaagca
     6421 aattcaaatg gaatagatga ataatcagta atcaatatat ctacggctgg tagtatcgtc
     6481 tcgattggcg tttctttatc cgcatagac
//
LOCUS       DASDXX010000150         6475 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.150, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000150 DASDXX010000000
VERSION     DASDXX010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6475
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.150"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1241
                     /locus_tag="U0280_002250"
     CDS             <1..1241
                     /locus_tag="U0280_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEM2272175.1"
                     /translation="NNQKLVEMYKRCMENTLDTTIKIRDSGLTFILTGDIPAMWLRDS
                     VCQVRPFLIFAKENEEIESMLIGLSKEQVSLVEIDPYANAFNETPNGAGHQADKTEMH
                     PQVWERKYEIDSLCYPIQLAYFIWKITGRTEQFDSAFFKMLQTIFALWEVEQHHETKS
                     PYRFERMDCVPSDTLKRNGLGTETAYTGMLWSGFRPSDDACEYGYLIPSNMFAVVVLG
                     YAKEIIEAFYPREIETIKQAVTLQNDIQLGIEKFGTYNHPTFGEIFAFEVDGLGNQLL
                     MDDANVPSLLSMPIIEYLEKESPIYQNTRKFILSKSNPYYFEGKLAKGIGSPHTPAGY
                     IWPIGLAIQGLTASDKSEKLEILQMLLRTDAGTGLMHESFHPDYPEDFTREWFSWANM
                     MFCELVLDVAGFRMANVLKN"
     gene            1258..2148
                     /locus_tag="U0280_002251"
     CDS             1258..2148
                     /locus_tag="U0280_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2272176.1"
                     /translation="MATIRNKSAQIHQQRMAYLFIALPVLLLAIFMILPIGMALFVSF
                     TDYDIVNSPNWIGFDNYIKMFRDPYFLISLKNTIIYTALFVPLGLAASLGAAILINMN
                     KKGAGLFRTFFYVPVLCSTVATATIWYWLLNPQYGLINRVLGWFGINGPAWLYDSNWA
                     MFAIVMMSVWMTFGTNMMIFLAGLQGIPANLYEASKIEGASRWKTFRYVTWPSLSRTT
                     FLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLVYYIYNEGFGGLKMGYASAISFVLF
                     LIILVFSIINMRVNKEDRTA"
     gene            2160..3035
                     /locus_tag="U0280_002252"
     CDS             2160..3035
                     /locus_tag="U0280_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2272177.1"
                     /translation="MNTIKLKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEI
                     LSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLILAVGGVLTNLFFGSLAGYAFAKL
                     PFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAIL
                     IPGAAGAFSIFFMKQFFETLPDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMT
                     FQAGWNQFMWPLIVLNSQKMMTVQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIF
                     AQKYFVEGIAHNGGK"
     gene            3057..4310
                     /locus_tag="U0280_002253"
     CDS             3057..4310
                     /locus_tag="U0280_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2272178.1"
                     /translation="MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSG
                     DQIKQLEKQIDSYNKSQDKYKVKYVMQENVEEKLLTGIAGGELPDIIMWDRYQTALYA
                     PKGVLEPLDKLVKEDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEA
                     GVKPPTTWDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKET
                     AFNSEQGLEVLNYWDKMQNDLKVYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVED
                     LDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKIS
                     GWLPANKIAAEDEYFTKDPNYSVFVNTMKYAEIRPTVAGYADVEGLAMKPQFEKFMNG
                     NISAEKALSQAEKEGNQILKEERDK"
     gene            4314..5342
                     /locus_tag="U0280_002254"
     CDS             4314..5342
                     /locus_tag="U0280_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HEM2272179.1"
                     /translation="MKWSEYANLAQLSLEKFYLADTKEQFLNNFYPTENPEEDNKVFN
                     YWWLAHLVEVRLDAYLRTKKQADLEIAENTYLHNKNRNGGTLIHDFYDDMLWNALAAY
                     RLYKETGKPIYLEDAQLVWQDLVDTGWNNIMGGGFAWRRPQMYYKNTPVNAPFIILSC
                     WLYNEFNETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGAIDYEWKFTYNQGVY
                     IGANLELYRITKDAKYLDTANKTADISLKELTEDGIFKDEGSGGDEGLFKGIFYRYFT
                     DLMEETANKTYRNFVFNSCQVLVDNAKLDGYLLMGMNWKENPSGKIPYSAELSGMIAL
                     EMAAKLER"
     gene            complement(5354..6472)
                     /locus_tag="U0280_002255"
     CDS             complement(5354..6472)
                     /locus_tag="U0280_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2272180.1"
                     /translation="MKKLLYQKVYDQLKLSIQEGKIPVGSKMPAENELMAQFDVSSIT
                     LKKALELLKKDGYISRRPRVGTFVLNASPVSEQIETRMFDKPLFGCIMTNFDDTFGTT
                     LLSGMLEHSDSKAHIIVKKSLGDTEREEEILQEFIEMNVAGILILPASSKFVSPTLLE
                     LASQKFPLVVIDRTLEGLPISSISSDNTEAGRIITEKLFELGHKHIGMITSTSPVSTL
                     DSRVNGFIRGHASFHTAFHSDYVFREIESVMPNSTVSIQTDIDKIAHFLNTHSEITAL
                     VATEYNIALLIKQACNKLGKSIPGDLSVVSFDHPDNFFDNSAFQFTHIKQAQYEIGVK
                     AVDMLLNQVLKPDTINKETLPPMLIEGDSVKMLKSTSK"
BASE COUNT         2161 a          982 c         1305 g         2027 t
ORIGIN      
        1 taaataatca aaaattagtt gaaatgtata aaaggtgtat ggaaaacaca ttagacacca
       61 ccataaaaat tcgagatagt ggactcacat ttattttaac aggtgatatt ccagcaatgt
      121 ggctacgtga ttcagtatgc caagtacgac cttttctaat ttttgctaaa gaaaatgaag
      181 aaattgagtc gatgttgatt ggccttagca aagaacaagt gagtttagtt gaaattgatc
      241 cttatgctaa cgcttttaat gaaacaccaa atggagctgg acatcaagct gataaaacag
      301 aaatgcatcc acaagtatgg gaacgaaaat atgagattga ttcattatgc tatccgattc
      361 aattagcgta ctttatttgg aaaattactg gaagaacaga acaatttgac tcagcatttt
      421 tcaagatgtt acaaacgatt tttgctttat gggaagtaga acaacatcat gaaacaaaat
      481 cgccgtatcg ttttgaacgg atggactgtg ttccttctga tactctaaaa agaaacggac
      541 taggaacaga aacagcatac acaggaatgc tttggtcagg atttagacca agtgatgatg
      601 cttgtgaata tgggtacctt atcccttcaa atatgtttgc agtagtagtt ttaggttatg
      661 ctaaagaaat tatagaagct ttttatccaa gagaaataga aacgataaaa caagcagtta
      721 ctttacaaaa tgatattcaa ttagggattg aaaagtttgg tacatataat catccgactt
      781 ttggtgaaat atttgctttt gaagtagatg gtcttggaaa tcaattattg atggatgatg
      841 caaatgttcc aagtttactc tctatgccaa tcatcgaata tcttgaaaag gaatctccca
      901 tttatcagaa tacgcggaag tttattttaa gtaagtcaaa tccgtattat tttgaaggta
      961 aactagcaaa aggaattggt agtccgcata caccagcagg atatatttgg ccaattggac
     1021 tggcaattca aggattgaca gcaagtgata aatcagaaaa actggaaatt ttgcaaatgt
     1081 tgttaagaac ggatgccgga actggattaa tgcatgaatc gtttcatcca gattacccgg
     1141 aagactttac gcgcgaatgg ttttcttggg ctaatatgat gttttgtgaa ttagtacttg
     1201 atgtagctgg gtttcgaatg gcaaatgttt tgaagaacta acgaaggagg cttattgatg
     1261 gcaacaatta gaaataaatc tgcccaaata caccaacaac gaatggctta cctttttatt
     1321 gcacttccag ttttattact agcgattttt atgattttac caattggaat ggcgctattt
     1381 gtcagtttta cagattatga tattgttaat tctcccaatt ggattggctt tgacaattac
     1441 ataaaaatgt ttagagatcc ttattttctc atttcattaa agaatactat tatatacacc
     1501 gctttgtttg taccacttgg tcttgcagca tcgcttgggg ctgctatctt gattaatatg
     1561 aataaaaaag gggctggctt gtttcggaca tttttttatg tgccggtatt atgctctacg
     1621 gtagcaactg cgacaatatg gtattggttg cttaatcctc agtatggttt gattaatcgt
     1681 gttttaggat ggtttggaat taatggccca gcatggctct atgattcgaa ctgggcgatg
     1741 tttgcgattg tgatgatgag tgtttggatg acatttggaa caaatatgat gatttttctt
     1801 gccggtcttc agggtatccc ggctaactta tatgaagctt ctaaaataga aggagcttca
     1861 agatggaaga catttcgtta tgtcacttgg ccatcccttt cacggaccac tttcctcgta
     1921 acaacaatgc taattatcaa cgcttttcag gtgttcgatc aagcatatgt tttaacaaaa
     1981 ggcggtccag gaaactcaac tattacgctt gtctactaca tttacaatga aggattcgga
     2041 ggattaaaaa tgggctatgc ttccgcaatt tcttttgtgt tatttttaat catactagta
     2101 ttttcgatta tcaatatgcg tgtaaataaa gaagatagga cagcttaagg agggttgata
     2161 tgaataccat aaaattaaaa aaagggagca agtcgttcat ttggtatatt gctgtacttc
     2221 taattagttt agtgactgtt tttccactta tttggacagt atctacttcc tttaaaccaa
     2281 caagtgaaat tttaagtaat agtatgaatt taattcctaa aatgtttact tgggataatt
     2341 acaaagatgt ttttagtaca accccatttg cccgctacct agtcaactct ttaatacttg
     2401 cagttggtgg tgtgctcact aatttattct tcgggtcatt agcaggttat gcttttgcta
     2461 agctaccttt taaagggaaa aaaggtcttt ttatgacatt tttaggaagc atgatgattc
     2521 cagcagtagt aacaatgatt ccatctttct tagtattaaa gaatttcccg ttgatgggcg
     2581 gtaatgatat tactggtcat ggtggtatgg gttttataaa tacttactgg gcaattttga
     2641 ttccaggagc cgctggggca ttttcgatct ttttcatgaa acagtttttt gaaacgttac
     2701 cagatgaact ttctgaagct gcaagaatag acggttgttc ggagtttaaa atcttttgga
     2761 aaatctatat gccgcttgct aaaactgcat tagctactct tggaataatg acattccagg
     2821 ctggctggaa ccagttcatg tggccattaa ttgttcttaa ttcacaaaaa atgatgacag
     2881 ttcaagtagg acttgcttct tttcaatata atgagagcgc caattatggg gctttaatgg
     2941 ctgggacaat tgtttctacc attccagtat tatttgtatt tatttttgca caaaaatatt
     3001 ttgtagaagg tatcgcgcat aatggcggta aataaaccaa aaaaggagtg tataggatga
     3061 aaaaagtatt gttagcaatt cttagtatgg tgttgttgct cagtttagcg gcttgtggtg
     3121 gaagttcaga cagtagtaag gataaggacg gaaaagaaga aattgttatg tggggctctt
     3181 ggtcaggaga tcaaattaaa cagttagaaa aacaaatcga tagctataat aagtcacaag
     3241 ataaatataa agtaaaatat gtaatgcaag aaaatgtaga agaaaaatta ttaacaggaa
     3301 ttgcaggtgg cgaactccct gatattatta tgtgggatcg ctatcaaaca gctctttatg
     3361 caccaaaagg agtgcttgaa ccgctagata aacttgtcaa agaagacaac gtgaagatgg
     3421 atgattttta tgaagaatca gtgaaagaaa tgacctatag tgataaatta tatggtttac
     3481 cgttattgaa tgataatcga attctgtttt acaataaaaa attattacaa gaagctggcg
     3541 taaaaccacc aactacgtgg gatgaattag caactgctgc gcaaaaaaca acgaaatggg
     3601 atggaaataa aatgacgcag gcaggaatgt cacttcaaga tgttggcttg tttaacttgt
     3661 atttaatgca agcaggtggc gaactagtaa cttctgacaa taaagaaacg gcattcaatt
     3721 cagaacaagg cttagaagta ctaaattatt gggataaaat gcaaaatgat ttaaaagtgt
     3781 accaacgcgg ttttgatgat ggctccgatg cttttgcagc cggaaaagaa gcaatgacat
     3841 acaacggtcc gtgggcttta gcagattata ataaagtaga agaccttgat tatggtgtag
     3901 tagaaccacc taaaggacca aatggcgata aaggcgctat tatgggcgga tttggattag
     3961 taatgcctaa acaagccgaa cataaagacg gcgcatggga ctttatgaag tggtggacaa
     4021 cgaaaccaga aaatggcgta gaatttgcca aaattagtgg ttggttacca gcaaacaaaa
     4081 ttgctgctga agatgaatat tttacgaaag acccaaatta ttctgttttt gtaaatacaa
     4141 tgaaatatgc tgaaattcgt ccaactgtgg caggctatgc agacgtagaa ggtttagcaa
     4201 tgaaacctca atttgagaaa ttcatgaatg gtaatatttc agctgaaaaa gctttatcac
     4261 aagctgaaaa agaaggaaac caaattttaa aagaagagag agataaataa acgatgaaat
     4321 ggtccgaata tgcaaattta gctcaactaa gtttagaaaa gttttatctt gccgatacaa
     4381 aagaacaatt tttaaataac ttttatccga cagaaaatcc tgaggaagat aataaagttt
     4441 ttaattattg gtggctagct cacttggtgg aagtacgatt agatgcatac ttacgtacaa
     4501 aaaaacaagc agatttggag atagcggaaa acacatattt gcataataaa aatagaaatg
     4561 gtggaacgct tattcatgat ttttatgatg atatgctttg gaatgcactt gcggcttatc
     4621 gtctatataa agagactgga aaaccaattt atctagaaga tgcacagttg gtttggcagg
     4681 atttagtgga tactggttgg aataacataa tgggaggtgg ctttgcttgg cgtcgaccac
     4741 aaatgtatta taaaaacacg cctgtaaatg caccgttcat tattctttct tgttggctat
     4801 ataatgaatt taatgaaacg aaatatttag agtgggcaat gaagacctat gaatggcaaa
     4861 ctaaagtcct tgtacgtgaa gatggttttg tagaagatgg cattaatcgt ttagaagacg
     4921 gagccattga ttatgaatgg aaattcactt ataaccaagg tgtatatatt ggagctaatt
     4981 tagaattata tcgtattact aaagacgcaa aatatttaga tactgcgaat aaaactgcag
     5041 atatatcatt aaaagaatta acggaagatg gtatatttaa ggatgaaggc agcggcggag
     5101 atgaaggact attcaaaggg attttttaca gatattttac tgatttaatg gaagaaaccg
     5161 caaataaaac ttatcggaat tttgtattta atagctgcca agtgctagtt gataatgcaa
     5221 aattagatgg atatttgtta atgggaatga attggaaaga aaatccctct gggaaaattc
     5281 cttattcagc agaattaagt ggaatgatcg cacttgaaat ggcggcaaaa ctagaacgat
     5341 aaaaaagcac ctcctacttg gaggtgcttt ttagcatttt gaccgaatct ccttctataa
     5401 gcattggagg tagagtttct ttgtttatag tatctggttt tagcacttga tttaaaagca
     5461 tgtcaactgc tttcacgcct atttcgtatt gggcttgttt aatatgtgta aactggaagg
     5521 cagagttatc aaaaaaatta tctggatgat caaaactaac aacggataaa tcaccaggaa
     5581 tggatttccc taacttgttg catgcttgtt ttatcaaaag agcaatattg tattcagttg
     5641 ctacaagtgc cgtgatttca gaatgtgtat tcaaaaaatg tgcaatttta tcaatatctg
     5701 tttggatgga aacggttgaa tttggcatta ctgattctat ttcgcgaaaa acataatcag
     5761 agtgaaaagc tgtgtgaaaa gatgcatgcc ctcgaataaa tccgtttact cgactatcaa
     5821 gcgtagagac tggactagta gatgttatca ttccaatatg cttatgccca agttcaaata
     5881 atttttctgt aataattcga ccagcttctg tattatctga actaatagaa gatattggta
     5941 agccttctaa tgtacgatct atgacaacta aaggaaattt ttgagaagca agttctagta
     6001 aggtcggtga aacaaacttc gaactagcag gtaaaatcag tatccctgca acattcattt
     6061 caataaactc ttgcaaaatt tcttcttctc gctctgtatc gccaagtgat ttttttacaa
     6121 taatatgagc tttagagtca ctgtgctcta acatcccaga taataaagta gtaccaaaag
     6181 tatcgtcaaa atttgtcata atacaaccaa aaaggggttt atcaaacatt ctagtttcta
     6241 tttgttcgct aactggcgaa gcattaagta caaaagtacc aacccgaggg cgtcttgaaa
     6301 tataaccatc tttctttaat aattctagcg ccttttttaa cgtaatactg ctcacatcaa
     6361 attgagccat caattcattt tctgcaggca ttttgctgcc aacaggaatc ttaccttctt
     6421 gaatcgacag tttaagctga tcatagactt tttgatatag tagttttttc attca
//
LOCUS       DASDXX010000151         6328 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.151, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000151 DASDXX010000000
VERSION     DASDXX010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6328
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.151"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(81..1352)
                     /gene="rho"
                     /locus_tag="U0280_002256"
     CDS             complement(81..1352)
                     /gene="rho"
                     /locus_tag="U0280_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEM2272181.1"
                     /translation="MAKLSIAYLESLTIKEIYALAKEHKITYYSKLTKRELIFALLKS
                     NAEKEGFFFMEGVLEIIPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDKVSGK
                     VRPPKENERYFGLLHVEAVNGENPEVAKERVHFPGLTPLYPDRQIHLETGKNPISTRT
                     IDLISPIGFGQRGLIVAPPKAGKTVLLKEIANAITTNHPESELIVLLIDERPEEVTDI
                     ERSVKADVVSSTFDEVPENHIKVAELVLERAMRLVEQKRDVVILMDSITRLARAYNLV
                     IPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEF
                     KGTGNMELHLDRQLAERRVFPAIDMRRSGTRKEELLLSKERLEQLWKIRKAMPKQSDG
                     LDISERFVRYLKKTENNEAFYELLQEEMFKK"
     gene            complement(1457..2728)
                     /locus_tag="U0280_002257"
     CDS             complement(1457..2728)
                     /locus_tag="U0280_002257"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM2272182.1"
                     /translation="MTDKLIIRGGKKLAGTLQVDGAKNSAVALIPAAILAESEVVLEG
                     LPDISDVHTLYNILEELGGTVRYDNKTAVIDPTDMISMPLPSGNVKKLRASYYLMGAM
                     LGRFKKAVIGLPGGCYLGPRPIDQHIKGFEALGAKVTNEQGAIYLRADELKGARIYLD
                     VVSVGATINIMLAAVRAKGKTVIENAAKEPEIIDVATLLTNMGAIIKGAGTDTIRITG
                     VEHLHGCHHTIIPDRIEAGTFMVLAAASGKGVRIENVIPTHLEGIIAKLTEMGVPMDI
                     EEDAIFVGEVEKIKKVDIKTYAYPGFPTDLQQPLTALLTRAEGSSVITDTIYPSRFKH
                     IAEIERMGGKFKLEGRSAVINGPVQLQGSKVTATDLRAGAALVIAALLADGETEIHGV
                     EHIERGYSKIIEKLSAIGANITRSSAAETKL"
     gene            complement(2845..3918)
                     /locus_tag="U0280_002258"
     CDS             complement(2845..3918)
                     /locus_tag="U0280_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012580737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase-like domain-containing protein"
                     /protein_id="HEM2272183.1"
                     /translation="MSGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNP
                     WWLSAAFAAMFIYWFLEAVVLQTASKPANKDQRFFSSFRITMIGQFFNTITPMATGGQ
                     PAQLVMLTKQGMDAGRGSSVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLV
                     LLGFGVHVIVIAALILVGRSQKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITF
                     HEESSRIGKDWKLIVRCCFYTTLQLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIM
                     FATVMPTPGGAGGAEYTFTLLFGMLLGPAKLLMALVLWRIITYYSCIVFGAGALLIKD
                     TASKKIKPRIKALAKAPAKNIPQ"
     gene            complement(3925..4950)
                     /locus_tag="U0280_002259"
     CDS             complement(3925..4950)
                     /locus_tag="U0280_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM2272184.1"
                     /translation="MIKLTMLSSAEKVKGQGVASAYRELVNLLEERYKNEIDMKINSF
                     EKSDITHYHTVDFRFFLSTFFKKKRGVRVGYVHFLPETMEGSLKLPWIARVVFYKYLI
                     GFYKRMDEIVVVNPSFIPKLTAYNIPAEKIHYIPNFVSKKSFFPISKGEKELARAKYE
                     IPADKFTVIGIGQVQHRKGVLDFIEVAKQLPDVQFVWAGGFSFGKITSGYEELKKIYD
                     NPPSNVKFIGIVDRSEMNSCINMADVFFMPSYNELFPMAILEAMSCDVPILLRNLDLY
                     EEILDGYYVKEVDNPGFIRAIERLENDTNYYNEMLQASKRGAAYYSEDRLAEIWLDFY
                     QGLLTKE"
     gene            complement(4943..6226)
                     /locus_tag="U0280_002260"
     CDS             complement(4943..6226)
                     /locus_tag="U0280_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM2272185.1"
                     /translation="MNIGIFTDTYSPQISGVATSIMIMENELRKQGHTVYIFTTTDPN
                     ADRESEEGRVFRLPSIPFVFFPERRVAIAGMNKFIKLVGRLDLDIIHTHTEFSLGLLG
                     KRIAKKYHIPSIHTYHTMYVDYLHYIAKGKILTPSMVGKMTKSFCDSYDAIITPTAKV
                     RHHLEEQGIHKLMYTVPTGTDISSFAPVEKQRILNLKKLLGIGENDPVILSLGRIAHE
                     KNIDAIINAMPEVLQTKTTAKLVIVGDGPVRKDLEKLVEEKQLADHVIFTGAVDWENI
                     SLYYQLGDLFVSASTTETQGLTYAEAMAASLPVVAKRDESIEGFLSDRETAFLFNEDD
                     ELASLLINILSDKNTATLVATNGRVKVESISADQFGINIESTYNEVREIYRVKRQNGT
                     IKVKPTLIKSKIASQVFSLSSSTHVQRKERSSRRD"
BASE COUNT         1877 a         1336 c         1064 g         2051 t
ORIGIN      
        1 atctgtgtac cacggaattt tatttaataa ttgtcttatt ttgctcataa aataacttct
       61 ttctatgtga aatttttgat ttatttttta aacatctctt cttgtagtaa ctcataaaaa
      121 gcttcattat tctccgtttt cttcaaataa cgtacaaatc gttctgaaat atctagtcca
      181 tcgctttgtt tcggcatcgc tttgcggatt ttccagagtt gttcaagacg ctctttggat
      241 agtagtaatt cttcttttct tgtgccggag cgacgcatat cgatagcagg aaaaacgcga
      301 cgttctgcaa gttggcgatc aagatgtaac tccatgttgc ctgtcccttt gaattcttcg
      361 taaataacat cgtccattcg agaacccgtg tcaactaatg ctgtggcaag aatggttaag
      421 cttccaccct cttcaatatt acgagcagct ccaaagaagc gcttcggtct atggaatgca
      481 gcaggatcaa tcccccctga aagtgttcga ccacttggcg gaatcactag gttataggcc
      541 ctcgcaagtc gcgtaatact atccattaaa atgaccacat cgcgtttttg ttctactaaa
      601 cgcatcgctc gttcaagaac cagttctgct actttaatgt gattttcagg tacctcatca
      661 aatgtggaac tgacaacatc ggcctttaca gaacgttcga tatcagttac ttcttccgga
      721 cgctcatcaa ttaacaagac aatcaattct gactctggat gattagtagt aatcgcgttc
      781 gcaatttctt taagtaatac cgttttacct gcttttggtg gagctacaat aagtccgcgt
      841 tgaccaaaac caattggtga aatcaaatca atcgttcttg tggaaatagg atttttgcct
      901 gtttctaaat gaatttgacg atctggataa agcggtgtta gtcctgggaa atgcactctt
      961 tctttagcca cttcaggatt ttctccattg acagcctcaa catggagtaa gccaaagtaa
     1021 cgttcatttt ctttcggagg acgaactttt ccagaaacct tatccccagt tcttaactcg
     1081 aaacgtctaa tttgggaagc agagatgtaa atatcttccg aactagatga atagttgata
     1141 gggcgtaaga agccaaaacc ttcatttgga ataatttcta atacaccttc catgaagaaa
     1201 aatccttctt tttctgcgtt tgattttaat aaagcaaaaa tcaattctcg ttttgttaat
     1261 ttactatagt aagtaatttt gtgttctttt gctaaggcat atatctcttt gattgttaaa
     1321 ctttctaagt atgcaatgga cagtttagcc atatatgtac cacctttttg agttaataaa
     1381 tagtatttag gaataaatga taatggaggg atttagaggg aaggctgaaa cgacttgatt
     1441 cgttcagcct cattttttat aattttgttt ctgctgcgct actacgagta atatttgcgc
     1501 caatagcaga taatttttca ataatcttac tgtaaccacg ttcgatatgt tccaccccgt
     1561 gaatttcagt ttctccgtca gctaaaagtg ctgcaattac aagcgctgca ccggcgcgta
     1621 aatctgtcgc tgtcacttta gaaccttgaa gttgcacagg accatttatg acagccgaac
     1681 gaccttcaag tttaaactta ccgcccattc gttcaatctc cgcaatgtgt ttaaaacggc
     1741 ttggataaat tgtatcagtg atgacactac taccttccgc acgtgttaaa agagcagtta
     1801 acggttgttg taagtccgtt gggaagcctg gataagcgta agttttaata tctacttttt
     1861 ttattttttc tacttcccca acaaaaatag catcttcttc gatatccatt ggaacgccca
     1921 tttctgtgag ctttgcaatg attccttcta aatgggtagg aataacattt tcgattcgta
     1981 ctcccttccc agaagctgct gcaagtacca tgaatgtccc tgcttcgatt cggtctggaa
     2041 taattgtatg atgacaacca tgtaaatgct ctaccccagt gattcgaata gtatcagttc
     2101 ctgcaccttt aataattgct cccatatttg ttaaaagcgt tgcaacatca ataatttctg
     2161 gctcttttgc tgcattttcg ataaccgttt ttccttttgc acgaacagcc gctagcatga
     2221 tattgattgt cgctccaaca cttacaacat ctaaataaat ccgtgcacct ttgagttcat
     2281 cggcacgcaa ataaatcgca ccttgctcgt tcgttacttt tgcgcctaat gcttcaaaac
     2341 cttttatatg ttggtcgatt ggacgtggcc ctaagtaaca accgcctgga agtccaataa
     2401 ccgctttttt aaatcggcct aacattgcac ccattaaata ataggacgca cgtaatttct
     2461 tcacatttcc cgatggaagt ggcatagaaa tcatatctgt tggatcaata actgctgttt
     2521 tattatcata gcgaaccgtg ccgccaagct cttctaaaat attataaagt gtgtgaacat
     2581 ccgaaatatc tggtaaacct tctaaaacca cttcagactc cgccaaaatt gccgctggaa
     2641 ttaatgccac cgcactattt tttgcgccat ccacttgcaa agtaccagct aattttttac
     2701 cgcctcgaat aatcaattta tccgtcacaa atgtaccctt ctttcttgaa gcatgtaata
     2761 ctgtttcatt atccattaat ttgttttact ttgcaagaaa tgctttccct aaaaagctgg
     2821 gaacattacg tcccaagctt ttaatcattg tggtatattt ttggctggtg cttttgcgag
     2881 tgctttgata cgcggtttaa tttttttcga agctgtatct tttattaata atgcgcccgc
     2941 cccgaaaacg atgcagctat aataagtaat aatccgccat aaaacaagtg ccattaggag
     3001 ttttgccgga ccgagtaaca taccgaataa caaagtgaaa gtatactcag ctcccccagc
     3061 cccacccggc gttggcatga ctgtcgcaaa cataataata aaagcatgat acgtaatcgc
     3121 catatacagg ccaattcctg tcacaccaat cgcttgtaaa ataaagaaag ggattgagaa
     3181 gtaaatccaa agttgcaacg ttgtataaaa acaacaacga acaattaatt tccaatcttt
     3241 accaattcgg ctactttctt catggaaagt aataattttc tcatctaatg tatttcttaa
     3301 attagaaact ttttcttttt tcataaataa acgtgttggt ataagtaaaa cgtgcactaa
     3361 ttttgtcgtg aacttttggc ttcttcctac taaaataagc gcagcgatga caataacatg
     3421 cacaccaaac cctagtaaaa caaggaattt caattgtgtc acgccagtca ttaaataatg
     3481 aataccaaaa atcaagataa ctaaaaagtt cagtacgacc atcgcttggt aaataatgaa
     3541 ttttacaagt aagactgaac ttcctcgccc cgcatccatg ccttgcttcg tcaacataac
     3601 gagttgcgca ggctgtccgc cagtcgccat tggagtaatg gtattaaaaa attggccaat
     3661 cattgtaatc cggaatgacg aaaaaaaacg ttggtcctta ttcgctggtt tagatgcagt
     3721 ttgtaaaaca accgcttcta aaaaccaata aataaacatt gcagcaaagg cagccgagag
     3781 ccaccaaggg ttcactttta acatcgaagc aaaaaaagtg gagatatcta cgccttgaaa
     3841 ttgccaaata atgaagccga tgctaatggc taatacaatc gcaatattaa ataggttttt
     3901 ctttgcgcct ccactcatta cctttcactc cttcgttaat aatccttgat aaaagtccaa
     3961 ccatatttca gccagtcgat cctctgaata ataagccgct cctcgttttg atgcttgtaa
     4021 catttcatta taataatttg tatcattttc taaacgttcg atagccctaa taaaaccagg
     4081 gttatctact tcttttacat aatagccatc taaaatttct tcatacagat ctaaatttcg
     4141 taataatatc ggaacatcac aactcatcgc ttccaaaatc gccattggaa ataattcgtt
     4201 gtaagatggc ataaagaaca catctgccat attaatacat gaattcattt cagaacgatc
     4261 cacaattcca atgaatttca cattacttgg tggattatca tagattttct tcaattcctc
     4321 gtagccagaa gtgattttac caaaagaaaa tccgcctgcc caaacaaatt gaacatcagg
     4381 aagttgttta gcaacctcaa taaaatcaag cacaccttta cgatgttgca cttgaccaat
     4441 tccaatcacg gtaaatttat ccgccggaat ttcatatttt gcccgagcaa gttctttttc
     4501 tccttttgaa atggggaaaa agctcttttt tgaaacgaaa ttcgggatat aatgaatttt
     4561 ttctgctgga atattataag ccgtaagttt gggaataaaa gagggattta caacaacaat
     4621 ctcatccatt cgtttataaa aaccaatcaa atatttatag aaaactacgc gggcaatcca
     4681 aggtaatttg aggctccctt ccattgtttc gggtaaaaaa tggacatatc cgacccgaac
     4741 gcctcgtttc ttcttaaaaa aagtcgaaag aaaaaaacgg aaatcaacgg tatggtaatg
     4801 cgtgatatcc gatttctcaa aactattaat cttcatatca atttcattct tatatcgttc
     4861 ttctagcaaa ttcacaagtt cgcggtaagc tgatgccaca ccctgacctt ttactttttc
     4921 tgccgaagat agcattgtca acttaatcac gccgcgatga cctctctttc ctttgaacgt
     4981 gtgtagaaga tgatagtgaa aatacttgtg aagctatttt actttttatc agcgtgggct
     5041 ttactttaat cgtcccattt tggcgcttta ctcggtatat ttcacgaact tcattgtatg
     5101 tagattcaat gttgattcca aattgatccg cagaaatgga ttccactttt actcggccat
     5161 tcgtagcgac caatgtggct gtatttttgt ctgaaagtat atttattaac agtgatgcaa
     5221 gctcatcatc ttcattgaat aaaaaggctg tttctctgtc gcttaaaaag ccttcaatac
     5281 tttcatcacg tttggcaaca actggtaaag aagcggccat tgcttctgca taagtcaaac
     5341 cttgtgtttc tgtcgttgaa gcactcacaa acagatcccc taattgataa tataaactaa
     5401 tattttccca gtctactgca ccagtgaaaa taacatgatc tgctaattgt ttttcttcta
     5461 ctaatttttc taagtctttg cgcacaggac catcgccaac aataaccaat ttggctgtgg
     5521 ttttggtttg aaggacttct ggcattgcat taataatcgc atcgatattt ttttcatgcg
     5581 caattcttcc aagtgatagt atcactggat cattttctcc aataccaagt agtttcttca
     5641 agtttagaat tcgctgtttt tcaactggcg cgaacgatga aatatctgtg cctgttggaa
     5701 cagtgtacat taatttgtgg ataccttgct cttctaagtg atgccttact tttgcagttg
     5761 gagtgattat ggcatcatag ctatcacaga acgattttgt cattttaccc accatagaag
     5821 gtgtcaaaat tttacctttc gcaatataat gcaagtaatc gacatacatt gtgtggtagg
     5881 tatggataga tggaatatga tattttttag caattcgctt acctaataga cctaatgaaa
     5941 actccgtatg tgtgtgaatt atatctaaat ccaagcgccc tactagctta ataaacttat
     6001 tcattccagc aattgctacg cgacgttctg ggaaaaagac aaacggaata cttggtaaac
     6061 gaaacacacg gccctcttcg ctctctctat cagcgtttgg gtcggttgtt gtaaatatat
     6121 acacagtgtg cccttgtttt cttagttcgt tttccataat cattatcgat gtagctacac
     6181 cgctaatttg cggactgtag gtatccgtaa aaatccctat attcattact atcgcctact
     6241 ctcttcctcg ttggttcatt catcatttaa tatattatta taacataact atagtaagtc
     6301 gtatcacata actaactaca ttatggct
//
LOCUS       DASDXX010000152         6313 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.152, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000152 DASDXX010000000
VERSION     DASDXX010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6313
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.152"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            106..564
                     /locus_tag="U0280_002261"
     CDS             106..564
                     /locus_tag="U0280_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HEM2272186.1"
                     /translation="MKNISDVIEAYLKQVLESSEAVEIKRSEIADKFECVPSQINYVI
                     NTRFTMERGYIVESKRGGGGYIRIIKVKMNDKLQLLEAIISMVHDKKVSQSFSEDVIL
                     RLLEEEVITKKEARLMVAALDREVLILPLPDRDILRSRILEAMLVALKYD"
     gene            577..1095
                     /locus_tag="U0280_002262"
     CDS             577..1095
                     /locus_tag="U0280_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HEM2272187.1"
                     /translation="MICQRCGENKAVIALQQLNELGKVESLYLCENCATDEALSSEKD
                     LVKAMDTFSEVALDFLTLLQKEENAQKEIVCENCQLSFEEFLKTNRVGCPECYSAFEA
                     QLVPIIGRVQNGYKKHVGKVPAEVERAEGVQNEISRLQEKLAQLVENEEFEEAAVVRD
                     EIKALKAGGEDK"
     gene            1092..2114
                     /locus_tag="U0280_002263"
     CDS             1092..2114
                     /locus_tag="U0280_002263"
                     /EC_number="2.7.14.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="HEM2272188.1"
                     /translation="MNVFEPRLSSWLENAGDDDDVVLSSRIRLARNLKDEQFPVYEQK
                     EEIVDNIAEVFDDNFTLIKMNQISLLQKALLVEKHLISPYMMNKSEYGAVLLNEEENV
                     SIMLNEEDHLRIQCMTPGLRLFDALEAALQIDGYVEEKLSYAFDKEFGYLTSCVTNIG
                     TGMRASVMVHLPGLVTTKRIKSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLG
                     KTETEIVEDLTQVMEQIIMQERVARTTLKQKFHIALEDRVFRSYGLLMNCRIISMKEA
                     SDAISDIRLGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELEEKVIRAKVIR
                     EILGDK"
     gene            2143..4605
                     /locus_tag="U0280_002264"
     CDS             2143..4605
                     /locus_tag="U0280_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM2272189.1"
                     /translation="MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEG
                     IAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTY
                     VGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP
                     TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE
                     GLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILF
                     IDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYRKYIEKDAALERRFQ
                     PIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAID
                     VIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKK
                     SLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIPVAKLAETETNKLLNMEKLLHER
                     VIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDED
                     SMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPD
                     VFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHK
                     AMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQIVTLLTAQLTKRLAERDIHV
                     KLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDG
                     KLEVRKKDAPKKKTTAKKVKTK"
     gene            4752..6125
                     /gene="radA"
                     /locus_tag="U0280_002265"
     CDS             4752..6125
                     /gene="radA"
                     /locus_tag="U0280_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEM2272190.1"
                     /translation="MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKK
                     SRSAFNHTGEPSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIG
                     KSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
                     TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVT
                     KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEV
                     ANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKV
                     SLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCF
                     IGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEA
                     LKKALPD"
BASE COUNT         2059 a          892 c         1570 g         1792 t
ORIGIN      
        1 gtaaaagata aataaattgc taataggtag ggatatctag tataattaaa gtcaaaaata
       61 gtcaaagtca atgatttgca aaaaacagaa aggagattcc ttataatgaa aaacatttct
      121 gatgttatag aagcttattt gaaacaagta ttggaatcaa gtgaagcagt cgaaattaaa
      181 agaagtgaaa ttgcagataa gtttgaatgt gtaccttcac aaattaatta tgtaataaac
      241 actagattta caatggaacg agggtatatc gttgaaagta aacgtggtgg tggtggctat
      301 attaggatta ttaaagtgaa aatgaatgat aaacttcaat tgttagaagc aatcatttca
      361 atggttcatg ataaaaaggt ctctcaatca ttttctgaag atgttatttt gagattgctt
      421 gaagaagaag taataacgaa gaaagaagca agattaatgg tggcggcatt ggacagggaa
      481 gttttaattt tacctttacc cgatagagat attttgagaa gtaggatttt agaggcgatg
      541 ttagttgctt tgaaatatga ttaaggtgtg atgacgatga tttgtcaaag atgtggagaa
      601 aataaagcag ttattgcctt gcaacaatta aatgagcttg ggaaagtgga gtcattgtac
      661 ctatgtgaga attgtgctac ggacgaagct ctctcttcgg aaaaagattt ggttaaagcg
      721 atggatactt ttagtgaggt tgctcttgac ttcttaacgc ttttgcaaaa agaagaaaat
      781 gcgcagaaag agattgtttg tgagaattgc cagcttagtt ttgaagagtt tttaaagact
      841 aatcgagttg ggtgcccgga gtgttattcg gcttttgagg cacagttagt accgattatt
      901 ggtcgagtgc aaaatggata taaaaaacat gttggtaagg ttcctgcaga agttgaacgt
      961 gcggaaggtg ttcaaaatga aattagtcgc ttacaagaaa agctagcaca gctagttgaa
     1021 aatgaggagt ttgaggaagc tgctgttgtc cgtgatgaaa tcaaggcttt gaaagctgga
     1081 ggtgaggata aatgaatgta tttgaaccgc ggctgagttc ttggttagaa aatgctggtg
     1141 atgacgatga tgttgtttta agctcacgta ttaggcttgc taggaatttg aaggatgaac
     1201 agtttccagt ttatgagcag aaggaagaga ttgttgataa tattgccgaa gtttttgatg
     1261 ataattttac tttgattaaa atgaatcaaa tttctttgtt acaaaaggcg cttttggtgg
     1321 aaaaacattt aattagtcct tatatgatga ataaaagtga atatggtgcg gttcttttaa
     1381 atgaggaaga aaatgtgagt attatgttga atgaggaaga tcatttgcgg atacagtgca
     1441 tgacgccggg tttgagatta tttgatgcgt tagaggcagc gttgcaaatt gatggttatg
     1501 tggaagagaa gcttagttat gcttttgata aagagtttgg atatttgacg agttgtgtga
     1561 ctaatatcgg gactggtatg cgcgcttctg taatggtgca tttaccggga ctcgtgacaa
     1621 caaaaaggat taaaagtgtg attgaagcga ttaggagcct aggttttgtg gtaagaggta
     1681 tatacggaga aggtagcatg cctgcaagta atattttcca ggtctcaaat caagtaactc
     1741 tcggtaaaac ggaaacagaa attgtggaag atttaacgca agtcatggaa caaattatca
     1801 tgcaagagcg tgttgctaga actacattaa agcaaaaatt tcatattgca cttgaggata
     1861 gagtttttag atcatatggt ttattgatga attgtcgaat tatttctatg aaagaagctt
     1921 cagatgctat atcggatata cggcttggtg tagaattagg atttttcgag catatttctc
     1981 gccaaaaaat gaatgaattg gtactattct cgcaaccagc ttttttgaga agagaagcag
     2041 gacgagatat ggatgaatta gaagagaaag taatacgggc caaagtgatt cgcgagattt
     2101 tgggcgataa atgatgaggc ttacgataag gaggaaacaa caatgatgtt tggacgattt
     2161 acgcaaagag ctcagaaagt actcgcgttg tcacaagaag aggcgatgcg tttgaatcat
     2221 agtaatttag gaacagaaca tattttatta gggcttgtaa gagaaggcga aggaattgcg
     2281 gcgaaagctc tctatgaact gggaattagt tctgaaaaag tgcagcaaga ggtggaagga
     2341 ttaattggtc atggggaaaa agctgtgacg acgatccaat atacacctcg tgcgaaaaaa
     2401 gtaattgaac tgtccatgga tgaggctcgt aaattagggc atacttatgt tggaacagaa
     2461 catatcttac tggggcttat tcgtgaaggc gaaggagttg cggctcgcgt tttaagtaat
     2521 cttggtatta gtttgaataa agctcgtcag caagttttac agctcttagg cggcggggat
     2581 gctactgggg caggaagaca aacaaataca caggctacac cgactttaga tagtttggca
     2641 cgtgatttaa cagttattgc tcgggaagat aatttggatc cggttattgg ccgttctaaa
     2701 gaaatccaac gtgtgattga agtgcttagt cgtcgtacga agaataaccc agtacttatt
     2761 ggagaacctg gtgttggtaa aacagcgatt gcagaaggac tagcgcaaca aattgttcgt
     2821 aatgaagtgc ctgagacttt acgtggaaaa cgtgtaatga cactggatat ggggactgtt
     2881 gtggcaggga caaaatatcg tggtgaattt gaagaccgtt tgaaaaaagt aatggatgag
     2941 attcgtcaag ccggcaatgt tattctattt attgatgaat tgcatacctt aattggtgct
     3001 ggtggagcgg aaggtgcgat tgatgcctcg aatatcttga agccgcctct agctcgtggt
     3061 gagttgcaat gtattggtgc aacaacactg gatgagtacc gtaaatatat tgaaaaagat
     3121 gctgcacttg agagacgttt ccaaccgatt aaagtagatg agccaactgt agaagaatcc
     3181 attcaaattt tacatgggtt gcgtgatcgt tatgaggcgc atcaccgtgt tgcgattact
     3241 gatgaagcgc ttgaggctgc tgttcgtcta tctgatcggt acatttcaga ccgtttctta
     3301 ccggataaag cgattgatgt tattgatgaa tctggttcta aagtacgttt gaaatctttt
     3361 acaacgccaa aaaatgtaaa agaaatggaa aacaatttat ccgatttgaa aaaagaaaaa
     3421 gatgcggctg ttcaagggca agaatttgaa aaagcagcgt cattacgcga taaagaacaa
     3481 aaacttaaaa aatcattaga agaaacaaaa gcgaattggc aagaaaagca agggcttgac
     3541 catagtgaag taacagaaga gattgttgct gaagttgttg caagttggac tgggattcca
     3601 gttgcaaaac ttgcggaaac agagacaaat aaacttttaa atatggagaa acttttacat
     3661 gagcgtgtga ttgggcaaga tgctgcggtg aaagctgttt cgctagctgt acgtcgagct
     3721 cgtgcgggac ttaaagatcc gaaacgtccg attggttcct ttattttcct tggacctact
     3781 ggtgttggga aaacagaact tgctcgcgcg cttgctgagt ctatgtttgg tgatgaggat
     3841 tcgatgattc gaattgacat gtctgagtac atggagaaat tttccactgc tcgtttagtt
     3901 ggggctcctc caggttatgt aggctatgaa gaaggtgggc aactgacaga aaaagttcgt
     3961 caaaaacctt attcagtagt tcttttagat gaaattgaaa aagcgcatcc ggatgtattt
     4021 aatatgttgc tacaagtgct tgacgatggt cgtttgactg attctaaagg acgggtggtt
     4081 gattttagaa atacggtcat cattatgact tccaatattg gggctcaaga aatgaaacaa
     4141 gataaatcaa tgggctttaa tgttattgat ccgcttaaag accataaagc tatggagcac
     4201 cgtgttttac aagatttaaa acaggcgttc cggccagagt ttatcaaccg aattgatgaa
     4261 acaattgtat tccattcgct acaagaaaaa gaattgaaac aaattgttac tttgctgact
     4321 gctcaattaa caaaacgatt agccgaacgc gatattcatg tgaaattaac tgaaggtgcg
     4381 aaatccaaaa ttgctaaaga cggatacgat ccagaatacg gagcccgtcc tttgaaacga
     4441 gctattcaaa aagaagtgga agatatgctt tctgaagaat tacttcgtgg taacattaaa
     4501 gtaggcgatt acgtggaaat tggtgtaaaa gatggcaagt tagaggttag aaaaaaagac
     4561 gcaccaaaaa agaaaacaac tgcaaaaaag gtaaaaacta aataacaaac acgcctccct
     4621 taatcaattt tgaagggagg ttttttatgg aaaaatcagg attcgtgtca aaaaaacgaa
     4681 tttgatgaaa aggattaacg cgaacagatg atctgtggta aaatggagca tatgtatgga
     4741 gggatgtaga aatggctaaa gcaaaaagga caaccaaatt tgtgtgtcag gcatgtggat
     4801 atgaatcggc aaaatggatg ggaaaatgtc cgaattgcaa cgagtggaat cagatggtag
     4861 aagctttgga gccgtcaaaa aaatcacgct cagcttttaa tcatacggga gaaccttcga
     4921 aagcgactcc aattactcaa atagcaagtg aaacagaaaa acgtgtcgaa accaatatgc
     4981 cggagttaaa tagagttctt ggcggaggtg tggttccagg atctatggta cttgtcggtg
     5041 gggatcctgg tatcgggaag tcgactttat tactgcaagt ttcagctcaa ctgacgctca
     5101 caaataaaaa agtattgtat atatcaggag aagaatctat caaacaaacg aagctgcggg
     5161 cggaacgctt gcaagtttcg ggagataatt tatatgtgta tgcagaaaca aatttagaag
     5221 cagttcaaga aacgattgat tttgtgaagc ctgattttgt agtcattgac tccattcaga
     5281 ctgtttatca tcccgatgtt acaagtgcag cggggagtgt ttcgcaagtt agggaatgta
     5341 cagcgacatt gatgcgaatt gctaaaatgc aaaacattgc tatctttatt gttggacatg
     5401 taacgaagga aggtgctatt gcggggccgc gcctacttga acatatggtt gatactgtgc
     5461 tttattttga aggggagcgt catcatgctt accggatttt gcgtgcagtg aaaaaccgtt
     5521 ttggttccac taatgaaatg ggtatatttg aaatgcgaga tgttggactt gtagaagttg
     5581 ctaatccttc cgaagtgttc ttggaagaac gtcttgaagg cgcttcaggt tcaacggttg
     5641 tagcttctat ggaaggaact cgccccgtcc ttgtggaaat acaagcgctt gtttcgccta
     5701 cgatgtttgg taatgctaag cgaatggcga caggaataga ctataataaa gtttcgctaa
     5761 ttatggctgt tttagaaaag cgagtaggtt taatgttgca aaaccaagat gcttatttga
     5821 aagcagctgg tggggttaaa ttggatgaac ctgcagtgga tttggcggtt gcagtcagtg
     5881 ttgcatctag ctatcgtgat aaaccaacaa gaagtacgga ttgctttatt ggagaacttg
     5941 gacttacagg tgagattcgt cgtgttgcaa gaattgaaca acgcgtacaa gaagccgcaa
     6001 aacttggctt taagcgaatt tttattccta aaaataacga aggtaattgg aaaataccga
     6061 aagacgtgca agtggttggg gtggaaacga ttggagaagc tttgaagaaa gctttaccag
     6121 attaaaacta aatacttcgt tgattccgtg agtactattt gcggtatagt cttttaatag
     6181 tgtaaaatag tgctatatgt atatttggta atagcccaat tatatatata aattaaaaat
     6241 ggaaaggagg aaactaaatg cttacatggg taattcgagt gtgtttttta attctaggtg
     6301 ggacaacggg agt
//
LOCUS       DASDXX010000153         6252 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.153, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000153 DASDXX010000000
VERSION     DASDXX010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6252
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.153"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(93..1121)
                     /locus_tag="U0280_002266"
     CDS             complement(93..1121)
                     /locus_tag="U0280_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEM2272191.1"
                     /translation="MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIA
                     LADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKF
                     LAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQ
                     IIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGT
                     GDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLAD
                     GQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLA
                     EKIIPYLS"
     gene            1390..2916
                     /locus_tag="U0280_002267"
     CDS             1390..2916
                     /locus_tag="U0280_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2272192.1"
                     /translation="MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQA
                     FIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGESVS
                     MGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGY
                     ATDPDYVSKLVAIIERYNLDKYDIIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTE
                     NANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDEN
                     VHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKITRGGYAWFRISEGEK
                     VIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPFADYD
                     NEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTA
                     KLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
                     "
     gene            complement(2957..3808)
                     /locus_tag="U0280_002268"
     CDS             complement(2957..3808)
                     /locus_tag="U0280_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2272193.1"
                     /translation="MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIETGYRHID
                     TAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYID
                     LLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEV
                     NPFQQQAANLAVLRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWL
                     VEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWM
                     ASRKLNV"
     gene            complement(3830..4252)
                     /locus_tag="U0280_002269"
     CDS             complement(3830..4252)
                     /locus_tag="U0280_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2272194.1"
                     /translation="MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDL
                     NWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKK
                     VRELLVYKIDSYDSHIAQFKAGELNADNVEKLWKRDKF"
     gene            complement(4374..4733)
                     /locus_tag="U0280_002270"
     CDS             complement(4374..4733)
                     /locus_tag="U0280_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272195.1"
                     /translation="MKKPSIIFIFCTLLFVTACSTSENQTQATEATGTIEQVETDAIL
                     INNFKEKKDKYNPEATIRFDIVDKYYDETGNKIKITDLNKNDDVKIILTNDFPIQETS
                     PAPIDPKYVQKIILLNK"
     gene            4977..5846
                     /locus_tag="U0280_002271"
     CDS             4977..5846
                     /locus_tag="U0280_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4969 domain-containing protein"
                     /protein_id="HEM2272196.1"
                     /translation="MKKRGLLLVSVLMLFIFLTVACGSSEDNEESGEISTKEIELTVD
                     DPIIPTDENGEATIEGTVDPKSKLTIDGKAVKKDDSGRFTYTYSLPNDNVAEVDVKLL
                     AVRKNYKDEKYTITITNNSKAYNDNMVKQEAIQKEEAEKAEKERKEAEEKAKQEEEAA
                     AAKAATTDENTPSDDTVYGTLASKDTLTKEGDAFYKDEALDVLYSTVENDEIFQVLIQ
                     LGDESTIRKDLDKNHLTELARDYMESDATLIQTVSDESFVYESPSINKTYTVDYMLND
                     DGYVIAVYVTQAK"
BASE COUNT         1993 a         1140 c         1133 g         1986 t
ORIGIN      
        1 tttcttttgt tgcgaaagcg ttttgtccgc atcagcaacg tttataaata taccaagatt
       61 tttgcctttc gtcaatactt tttacaaagt ttttatgata aatatggaat tattttctct
      121 gctagggttt tatatgcttt tcctgaagtg cttgaagagt tgaaaagggc tgatacatag
      181 ccatttccat ttggttctgg ttgttctatt ggcagttgaa ttaaaagttg tgtttctaag
      241 tctgcagcaa ctttttcgcc gccgccttgt ccgaatactt ttaatacttg tccatcagct
      301 aaagtaagat aagacatatt ttcgattaca ccgatgattt tgtgattgtt ttttgctgcc
      361 atatatcctg ctcgagatgc gactgacgcg gctgcataat gtggtgttgt aacaataagt
      421 tcattgcatt tcgggataag cgtatggata tctagcgcaa catctccagt tccaggtggt
      481 aaatcgataa gtaaatagtc tagttttccc catcttactt cttctaaaaa cattttaatc
      541 attttcccta gcattggtcc gcgccagata actggttctc cttgttccac aaaaaaatcc
      601 atagaaatca tttgaatgcc gtgtgtttcg actgggatga tttgaccatt ttctttgcgg
      661 ggggattcgg ttgttcctag cagtacagga atactgaatc catatatatc cgcgtctaat
      721 aatcctactt ttttgccttg ttgtgctaag gcgattgcaa gattcgcaga gacagttgat
      781 ttcccgacgc cacctttacc actcgctatt gctaagaatt tcgtttcact agcttctgag
      841 agtatgttat ctcttgcttg gaaaatgcgg tcaataactg ctgcgggtag gtattctagc
      901 tcaatattta tttcatttac gccgaattgg gtgagaagtt cttctatatt atgaacaaaa
      961 tgatccgttt ctactgctgg atcagctaat gcgattttga tgtttgctgt ttcttcaagc
     1021 acttgcactt ctaaaacacc ttctgtttct tctaagcttg cctctaaaac aggatcttgc
     1081 aatctatata gcaatctagt aatttgttgt tcgtttaaca tatataaaaa cctccaaaaa
     1141 tgaatgcgct gacatactga ttattatagc atgaccgttt tattatttca catattgctt
     1201 gtcttttcgg tacaaaagtt tgttgaagaa aatttcacaa attttacata tttaacattt
     1261 ccagctttag tccttacgtc ccaataggtt tggcgtagtt attgtttttc gtcatagaaa
     1321 tgtaatagaa attttttggc attttttgat aatatagttg cagatatata aaaaggagtg
     1381 cattgaaatt tggatagaaa gtttataaaa ccagggataa ttctgctaat tgtggcattt
     1441 ttggtagttt ccataaatgt tggagcagaa acaggaggta gcagaacagc tcaagttaat
     1501 ctgactactt cacaacaagc tttcattgat gaaattttac cagcggctca ggatggatat
     1561 cgcgatggta aattgcttac aagtgtaacg ctcgctcaag caattttaga atcaaattgg
     1621 ggtgaaagtg gtctaagcca gaactctaat aacttattcg gaattaaagg aacgtataaa
     1681 ggtgagtctg tctccatggg gacaatggaa gcatccggct caacaaccgc taatttccgc
     1741 gtttatccta gttggaaaga atccattgaa gaccacacag ctttgattac tgaaaatgcg
     1801 cgctatcaag acgctgtcgg tgaaacgaac taccgcaaag cactgcaagc tattaaagac
     1861 ggtggttatg cgactgatcc agattacgtt tctaaactag tagcaattat tgaacgttac
     1921 aacttagata aatacgatat catttacgat aaaatcgaat ctaatcaatc cttagcagca
     1981 attggaacag tagctgaaaa taaagaacaa gaggttattt ggtcggcacc gtacaataca
     2041 gaaaatgcta ataaaatcgg gaccctcgaa aattacttag ggcgtaactt agaaatttcc
     2101 tgggaagcta aaacagaaaa aggtctatgg tactttattc gcgagaacaa caaagatatt
     2161 ggttggataa atagtaatgc cttaaaaatc agctatcatc aaaaagaaga tgaaaatgtt
     2221 catttaacca aatatgtaga tgatttaagc gcacatgtat atcgtctacc aagccctgaa
     2281 aaacaattcg ataatggaac tatcgcaaaa tacgatagaa aagcccttga agtagataaa
     2341 aaaatcactc gcggcggcta tgcttggttc cgaatttcag aaggcgagaa agtaattggc
     2401 tgggttcgcg cggataagtt gaatgatcgc ctttatgatc gcatcacaga acaaacttct
     2461 tacgatggct atgctctagt aagtaaatct gcaactgata acgtatggac tgcaccattc
     2521 aacacaaaaa acgcagaaaa attagcacca tttgcagatt atgataacga aaaactagaa
     2581 ctagtgactc gagctaaagc cggaaataca ctttggtatc agtttaaagt agatggaaaa
     2641 cttgttggat gggctagcga aaaagactta aatgtatttt atactcccgc taaagaagaa
     2701 ccagtaaaac aagtcgctta cgtgaaagac ccaacagcaa aactttataa caaacctgta
     2761 gaatcaacaa gtactaaccc aaaagcagtg ggcttctatt atggaaaatt attagcagtg
     2821 gataaaacag caaccattct tggtgaagat tggttgcatc ttaaagacag acaaaattca
     2881 ctaggatgga ttaaagctat cgacatcaat agttaaataa aaaaagggtc tgcatttacg
     2941 cagaaccttt tttcgtttat acattcagtt tgcgactagc catccatttc accatttctg
     3001 gatccgcatg tgagaagaac tggctttccc cttgatctag gctggcaatt tctcccttat
     3061 ctgcctccgt caattcaaaa tcaaatatag ccagattttg cgccattctt tctggtttta
     3121 cagatttagc taagacgata atatcttgct ctactagcca acgcaaaatt acttgagcgg
     3181 ccgattttcc atatttcgca ccaattttcg ttaaaactgg gttattaaaa atatcatttt
     3241 tcccttccgc aaacggtgcc catgcttcta ttgcaacccc ttcttttctt aaaacagcta
     3301 gattcgctgc ctgttgttgg aaaggattaa cttcaatttg gttgacttgc ggagttactt
     3361 cattgaacgc agctaggtca attacgcgat ccgggctaaa attcgatacg ccaattgctc
     3421 taatttttcc tgatgcttgt aattcctcca tcgctatcca tgccccgtat acatcgttga
     3481 aaggttgatg aattagcagc aaatcaatgt aatccaaccc taaacgtttt aacgaccggt
     3541 caaatgagct cataacacct ttataactta cattttccac ccatattttt gtcgtaatga
     3601 atagttcttt gcgatcgacg ccggatgcca caattccgcg acctacagct tcttcattca
     3661 tataactttg cgccgtatca atgtgacgat agcccgtttc aatcgcatct tttactgctt
     3721 gttccgcttc agcagcatct gtaatttgat atgtcccaaa tcctaaaata ggtacttcta
     3781 caccattgtt taatttcact gttttcattt gaaaatcctc ctcttatctt taaaatttgt
     3841 cccgtttcca taatttttct acattatctg catttaattc gccagcttta aactgcgcaa
     3901 tgtgactatc gtacgaatcg attttgtaca cgagtagttc tctgaccttc ttcatctcgg
     3961 ctaatttttc gtctaattct tttagttggt caaccagtac ttgtttttgc gccgcttcga
     4021 cattttgcgt ctctctgagc tgcgcaagtg tcgcaaactc aattaacgat tctaccgata
     4081 atcccgcatt ccgtaaattc ttcacgagat aaacccagtt caagtcactc gttttatagt
     4141 cccggtaacc actttcgtta cgatggactg gcggaataac accgacccgc tcataataac
     4201 gcaacgtatc tactgttaaa ccaaacatat cagccgcttg tttgatattc atcctccatc
     4261 acctcgtttc gttctttaca tatagaatta taaaccctgg agttcacacc aaggcaagga
     4321 atttgagttt atttttttga gaaaagaaaa aactctctgc ggacgagaga gttttatttg
     4381 tttagcagga tgattttttg tacgtatttt gggtctattg gggctggcga ggtttcttgg
     4441 attgggaaat cgttggttaa aataattttt acgtcatcgt ttttgtttaa gtcggttatt
     4501 tttattttat ttcccgtttc gtcgtaatat ttatctacga tgtcaaagcg tattgtggct
     4561 tccggattat acttatcctt tttttctttg aaattattaa ttagaattgc atccgtttca
     4621 acttgttcta ttgtgccggt tgcttcggtg gcttgtgttt ggttttcgga ggttgagcat
     4681 gctgttacaa agagtaatgt gcaaaaaata aaaatgattg agggtttttt catggtgtgg
     4741 ggctcctttt tatctctctt gttttaatcc agtaaatatt gacacttaaa tcatagcata
     4801 aaatgtactg aataactaaa gtcataccga aatttccaaa ctgattaatc attaaataga
     4861 aaactaactg atttaataaa tgatcatata tggcacattt ttaaaaaaac aaggttaatc
     4921 atgttataat agccattctg tatatttata tctaaacaca aaaggagccg gaaaagatga
     4981 aaaaaagagg tttattgttg gtaagtgttt taatgctttt catttttttg acagtagcat
     5041 gcgggagttc tgaagacaat gaagaaagtg gagaaataag tacgaaagaa attgaactta
     5101 ccgttgacga ccctattata ccaaccgatg aaaacggtga agcaactata gagggaactg
     5161 tagatcctaa atccaaatta accattgatg gtaaagccgt aaaaaaagat gacagcggga
     5221 gatttactta tacttacagt ttacctaacg ataatgttgc agaagttgat gtcaaacttc
     5281 tagcggtcag aaaaaattac aaagatgaaa agtacactat aactattact aacaattcaa
     5341 aagcatataa cgacaacatg gttaaacaag aggcaataca aaaagaggaa gccgagaaag
     5401 ctgaaaagga acgtaaagaa gcggaggaaa aagcaaaaca agaagaagaa gctgccgctg
     5461 caaaagctgc aacgactgat gaaaacactc cttctgatga taccgtatat ggtactttag
     5521 ccagtaaaga tactttaaca aaagagggag atgcatttta taaagatgaa gcacttgatg
     5581 tactctattc tacagtagaa aacgatgaaa tttttcaagt acttatacaa ttaggcgacg
     5641 aaagtacgat tcgaaaagat ttagataaaa atcatttaac agaattagca cgagattata
     5701 tggaatctga tgccactctt atacaaactg tctccgatga atcttttgtt tatgaatctc
     5761 catctataaa taaaacatat acagtagatt atatgttaaa cgatgatggt tatgttattg
     5821 cggtttatgt tacacaagca aagtgactaa aaaaaacaaa acctttaagc tatacaactt
     5881 ttaattaaaa gtatactatt acaaaaaagc ccttaagaac ttttttgttt gataaataga
     5941 atagcgactc aatgaaactt gcttttcatt gagtcgtttt ctatatagct ccactaaaca
     6001 aaaaaagcac cagcaaaagc tgatgctttg aaacgacata ttaacgtttt gagaaatata
     6061 cagataaatt ctaagtgtat tgaaaacatg gtaatccgtt tatatcaacg ttttgggaat
     6121 tgttatatgg ataaagatgt atggaaaagg attgaaattg acattacttg aaccaatttg
     6181 caccaaaatg atagatgtta gttgaataca attaagagaa ctaatttatt acattataaa
     6241 ttaactgtaa gt
//
LOCUS       DASDXX010000154         6236 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.154, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000154 DASDXX010000000
VERSION     DASDXX010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6236
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.154"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..700
                     /locus_tag="U0280_002272"
     CDS             <1..700
                     /locus_tag="U0280_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272197.1"
                     /translation="IKGSDYKNTVDSAVYTMDDAANISAFEKEAKKVDSIDWDTFKLD
                     ANDTLYQQMIGPINSVASFSKNVVYIVSIAGALILGLLVMMQVRDRKYEMGVLLAIGE
                     KRGKLIAQFFVEILIVALVSFGLAAASSHYVAQLAGNQLLAQQNSSTTETTSSTENRG
                     PGGGQGGPGGFGESVSNLTKNTEQIKELDIQVTLEDMLKMGGIGIGIAFISVLLPAAL
                     VLRMNPKTILTKQE"
     gene            709..1404
                     /locus_tag="U0280_002273"
     CDS             709..1404
                     /locus_tag="U0280_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272198.1"
                     /translation="MTKVLTFENISYWYKTKEESILSDINYDFEAGVFYTVVGSSGSG
                     KTTFLSLAGGLDTQKEGDIFYKGSSLKSIGLQQFRNKYVSIVFQSYNLLTYMTALQNV
                     TTAMEITHVNQPDKKAFALSMLEKVGITEDMARQKVLTLSGGQQQRVSIARALCCETE
                     LIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAKVSDVKLTLKNGSF
                     VEKKQSTNSLINS"
     gene            1711..4350
                     /gene="alaS"
                     /locus_tag="U0280_002274"
     CDS             1711..4350
                     /gene="alaS"
                     /locus_tag="U0280_002274"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM2272199.1"
                     /translation="MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSG
                     VATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKE
                     GAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWD
                     IGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYT
                     PLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFK
                     VIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGK
                     IMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADI
                     FKLYDTFGFPVELTEEYAEDHGLKVDHAGFEAEMKEQRDRARSARADVKSMQVQGELL
                     ANLTEKSAFVGYNSTEHVSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVA
                     DKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNH
                     TATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE
                     QINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLF
                     KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQAD
                     LREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDK
                     KIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAG
                     GKNPAELGTALDYVSTWVKEQQA"
     gene            4442..4714
                     /locus_tag="U0280_002275"
     CDS             4442..4714
                     /locus_tag="U0280_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HEM2272200.1"
                     /translation="MDSKDQTMFYNFGDDSIEEDVKKLMKQVYVALEEKGYNPVNQIV
                     GYLLSGDPAYIPRHKDARSMIRRLERDEIIEELVKAYLKNNEIGEK"
     gene            4711..5127
                     /gene="ruvX"
                     /locus_tag="U0280_002276"
     CDS             4711..5127
                     /gene="ruvX"
                     /locus_tag="U0280_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEM2272201.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDR
                     VKELVLEYEVEKVVVGLPKNMNNTIGPRAESSKIYAEVLESRIGLPVVLWDERLTTSA
                     AERTLIEADVSRKKRKEVIDKLAAVMILQSYLDTTN"
     gene            5143..5445
                     /locus_tag="U0280_002277"
     CDS             5143..5445
                     /locus_tag="U0280_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HEM2272202.1"
                     /translation="MAEEHNHNHEEENIIWITNEEGKEEAYEILFDFDSEDFDKSYVL
                     YFPAGKGEDEEIEILASSYIQDEEGKQGQLKPVETDEEWDMIEEILATFLADEDEE"
     gene            complement(5491..6117)
                     /locus_tag="U0280_002278"
     CDS             complement(5491..6117)
                     /locus_tag="U0280_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEM2272203.1"
                     /translation="MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIM
                     LFGGFMAEAGKLNFWLVVFAGIAGNFVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHL
                     DKAELWFGRYGARAVFFGRVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLT
                     WLGYSLGSNWSVVEKYTRPISYLMLALVIAIVVYLAYKVWNKRARNAK"
BASE COUNT         2184 a         1115 c         1282 g         1655 t
ORIGIN      
        1 aattaagggt tccgattata aaaatacagt agactcagct gtttatacga tggatgatgc
       61 ggctaatatt tctgcttttg aaaaagaagc aaaaaaagtt gatagcattg attgggatac
      121 atttaaatta gatgccaatg atacgcttta tcaacaaatg attggcccga ttaatagcgt
      181 agcatctttc tctaaaaatg tggtttatat tgtgagtatt gccggagcac taatcttagg
      241 cctactcgtg atgatgcaag tgcgcgaccg caaatatgaa atgggtgtac ttttggcaat
      301 tggtgaaaaa cgtggcaaat tgattgcgca attctttgtg gaaattttaa ttgtagctct
      361 ggtttccttt ggcctagccg ctgcaagtag tcactatgta gcacaattag cgggcaatca
      421 attattggcg caacaaaatt catctactac tgaaacaaca agttcgacag aaaaccgtgg
      481 tccaggtggt ggacaaggag gtccaggtgg attcggtgag agcgtgagca acttgacgaa
      541 aaacaccgaa caaatcaaag aattagacat tcaagtaaca ttagaagata tgctgaaaat
      601 gggcggaatt ggtatcggaa ttgcctttat ctcagtcctt ttaccagctg cactcgttct
      661 tcgtatgaat ccaaaaacaa ttctaactaa acaggagtag gtgacgatat gaccaaagta
      721 ttaacgtttg aaaatatttc ttattggtat aaaacgaaag aagaatctat tttaagtgac
      781 atcaattatg attttgaagc gggtgttttt tatacagtag tcggcagttc tggctcagga
      841 aaaacaactt tcttatctct tgcaggagga cttgatacgc aaaaagaagg ggatattttc
      901 tataaaggta gctcactcaa aagtattggc ttacaacagt ttagaaataa atatgtatcg
      961 attgtgttcc aaagttataa tctgttgacc tatatgaccg cactacaaaa tgtcacaact
     1021 gcaatggaaa ttacccatgt taatcaacca gataaaaaag cctttgctct aagtatgctg
     1081 gaaaaagtag gtatcacaga agacatggca cgccaaaaag tattgacgtt aagcggtggc
     1141 caacaacaac gggtttcgat agcgcgggct ctctgctgtg aaacggaatt aattgtagcg
     1201 gatgaaccaa ccggaaattt ggatgaacgt actagtaaag aagtagttac tttattccaa
     1261 gatttagcgc ataaagaagg taaatgcgtt attatggtga cgcatgatcc cgagattgca
     1321 aaagtgtccg atgtgaaact aacgcttaaa aacggaagct ttgttgaaaa gaaacaatca
     1381 acgaatagtc taataaacag ttgacattta gccatccgtt ctttataatt tagtttattg
     1441 ttgaatagaa attgatacat gataggaata tgattttggt ttccacgtga ttagagagtt
     1501 ttcccatggc tggaaggaaa accacgcttg caccaaaatt gctctcccat tagatgatcc
     1561 gtcttatcca cgttaacaga taacggaaga ggtaatgata caagtctata tcattgcaaa
     1621 cagggtggta ccgcgatttt actgaaatcg tccctgtgag caatcatata ggcttttttt
     1681 gttgttaaaa ccaaaaggag gaaataaaaa atgaaacaat tatcaagcgc tgaagtaaga
     1741 cagttatttt tagatttctt taaagaaaaa gggcatacta tcgaacctag tgcaccactt
     1801 gtgccaaata atgatccgac aattctttgg attaacagtg gtgtagcaac catgaaaaaa
     1861 tactttgacg gttccgttat tccagataat ccaagaatgg cgaacgctca aaaatcaatc
     1921 cgtacaaatg acattgaaaa cgttggtaaa acagcgcgtc atcatacatt ctttgaaatg
     1981 ctaggaaact tttctatcgg tgattatttt aaagaagggg cgattgtttt tgcttgggaa
     2041 ttcctaacga gccctaaatg gattggtttt gatccagata aattgtatgt gactgtgtat
     2101 ccagaagatg aagaagcgaa aacgttatgg cgcgaaaaaa ttggtttaag tgatgatcat
     2161 atcgtcgaaa ttgaagataa tttctgggat atcggtattg gaccaagtgg cccagacagc
     2221 gaaattttct atgaccgtgg acctgctttc ggtgacgatg caagtgatcc agaattatat
     2281 ccaggcggag aaaatgagcg ttatttagaa atttggaact tagtattttc tcagttcaac
     2341 cacaatccag atggaactta cactccgcta ccaaaacaaa acattgatac agggatggga
     2401 cttgaacgaa tggtttccat catccaagac gcaccaacta actttgaaac agatttattc
     2461 atgcctatta ttcgtgaagt tgaacaaatc gctggcgtga aatatggcca ttctcaagaa
     2521 aatgatgtgg catttaaagt gattgctgac catattcgta ctgtagcatt tgcaatcggt
     2581 gacggcgctt taccatccaa cgaaggacgc ggatatattt tacgtcgttt acttcgccgt
     2641 gctgttcgtt atgcaaaagt cctaacaatc aacgaaccat tcatgtacaa attagtacca
     2701 gtagttggga aaatcatgaa tagtttctat ccggaagtag aaaaccaaac agactttatc
     2761 caaaaagtca ttcgtacaga agaagaacgt ttccacgaaa cattaaacga aggtctagca
     2821 attttggaaa caatcctaaa aactgcgaaa gaaacaaatg aacaaattat caaaggcgca
     2881 gacattttta aattatatga tacattcggc ttccctgtag aattaacaga agaatatgca
     2941 gaagaccacg gcttaaaagt ggatcacgct ggcttcgaag cagaaatgaa agaacaacgt
     3001 gaccgtgctc gctcggctcg tgctgatgta aaatcgatgc aagtccaagg cgaactactt
     3061 gctaatttaa ccgaaaaaag tgcatttgtt ggctataatt caacagagca tgtttcagaa
     3121 atcttgtatt taatccaaga tgacacgctt gtggaggaag ttgcagctgg aagtgaagca
     3181 caagtcatct tcaaagaaac accattttat gcagaaagcg gcggacaagt tgctgacaaa
     3241 ggaaccatcg agagcgaaac tggtcttgct tatgtagaag atgtacaaaa agcgccaaac
     3301 aaacaaaatt tacaccgtat ttctgtcaaa gaaggcgtat taaaaacagg cgacacagtg
     3361 aaacttgctg ttgataaagt aaaacgtcgc gaaacaatca aaaatcatac agcaacacac
     3421 cttttacacc gcgcactcaa agacacatta ggcgagcatg ttaaccaagc tggatctctt
     3481 gtttcaccgg atcgtttacg ttttgacttc tctcattttg gtcaaattac agaagaagaa
     3541 ttaacgaaaa tggaagaaat cgtgaatgaa aaaatctggg aacaaatcaa tgttgtgatt
     3601 gaagaaatgc caatagcaga agcaaaagaa cttggcgcta tggcactatt tggcgaaaaa
     3661 tacggcgata tcgtacgagt tgtacaagta ggcaaataca gcattgaact atgtggcggt
     3721 gtccatgtgc gtaatacagc tgatattggt ctattcaaaa tcgtatccga aacaggtatc
     3781 ggagcgggaa ctagacgtat cgaagctgtt actggcaaag aagcctatcg ctttgtaaca
     3841 gaacaagaaa acacattaaa acaggcagcg agtctactaa aaacaacaac caaagaaaca
     3901 ccgcaaaaag tagaacaatt acaagctgac ttacgtgaag tgaaacgcga gaatgaatca
     3961 ctattaagta aattagcgag tgcagcaagc gcggatattt ttgaatcacc agaagaaatc
     4021 ggcggcgtaa aagtgattgc aaaacaagta aatgcaaaag atatgaacca attacgtcaa
     4081 ttcgtggata actggaaaga taaaaaaatt ggaggcattc ttgttttagg cgctgttcaa
     4141 ggcgataaag taaacttaat ctccgcagtc tctgaagaag caatcaaagc aggttaccat
     4201 gcaggtaaat tattaaaaga agtggcaaca cgttgcggcg gtaatggtgg tggacgtcct
     4261 gatatggcac aagctggcgg taaaaatcca gcagaactag gaacagccct tgattacgtt
     4321 tctacttggg taaaagaaca acaagcataa atttcatcaa agtgcctcat ttttctttgt
     4381 tatttccgtt cacatagtgt aaaatgaaag gagatacatg aaggaatgag gtgcttcgat
     4441 tatggattca aaagatcaaa caatgtttta caacttcggc gatgattcaa ttgaagaaga
     4501 tgtaaaaaaa ttaatgaaac aagtctacgt tgctcttgaa gaaaaaggct ataatcccgt
     4561 aaatcaaatc gttggctatt tactttcagg cgatccagct tatattcctc gtcacaagga
     4621 tgctagaagt atgatacgtc gtttagaacg agatgaaatt atcgaggaac ttgtcaaagc
     4681 gtatctgaaa aataacgaaa ttggtgagaa atgagaataa tgggtttaga tgtcggctcg
     4741 aaaacagtcg gcgtagcgat aagtgatcca cttggttgga ccgcacaagg tgtggaaacc
     4801 attcagattg acgagaatag aaagcaattc ggctatgacc gcgtaaaaga gctcgtgctt
     4861 gaatacgaag tggaaaaagt cgtagttgga ctacctaaga atatgaataa cactattgga
     4921 cctcgtgctg aaagttccaa aatatatgct gaagtacttg agtcaagaat tggactccct
     4981 gttgtacttt gggatgaacg tttgaccact tctgccgctg aaagaacttt gattgaagca
     5041 gacgtttcgc gtaaaaaacg aaaagaagtg attgataagt tagctgcagt aatgatttta
     5101 cagtcctatc tggacactac taattaattt gaggtgaatt taatggcaga agaacataac
     5161 cataatcatg aagaagaaaa tattatttgg atcacaaacg aagaaggaaa agaagaagct
     5221 tacgaaattc tttttgattt tgattccgaa gactttgaca aatcttatgt tttatatttc
     5281 ccggctggca aaggggaaga cgaagaaatc gaaatccttg catctagcta tatccaagat
     5341 gaagaaggca aacaaggtca acttaaacca gttgaaacag atgaagaatg ggatatgatt
     5401 gaagaaatcc ttgcaacatt cttagctgac gaagacgaag aataaaaatt aaaaaagcat
     5461 gtcctgacaa aaactgtcaa gacatgcttt ttattttgca tttctagcgc gtttattcca
     5521 tactttgtaa gcaaggtaga caacgatggc aataaccaaa gctaacatta aatagctaat
     5581 tggtcgtgta tatttttcca caacgctcca attggaacct aatgaataac caagccatgt
     5641 cagaaaaata ttccacggaa tgcagcctaa aatcgtatat ataacaaatt tccagacatt
     5701 cattttggca attccagccg gtaaagagat aaatgttcgg atgactggca aaacacggcc
     5761 gaaaaataca gctcttgctc cgtaacgacc aaaccataat tccgctttat ccaagtgctt
     5821 cacatttaag aatatatact ttccgaattt caatactaaa gctctaccac cgaatttacc
     5881 gatgtagtaa gcaatcagtg aaccgacgaa gttaccagca ataccagcaa aaacaacgag
     5941 ccagaagtta agtttcccgg cttccgccat aaatccaccg aatagcataa taacttcact
     6001 tggtagcggt atacaaacac tttcaatcag cattccgagg aaaatacccc agtgcccaag
     6061 cgagtctact aaccacatcg tgaaatcttg caaactttgt attaatgtat gtaacatcca
     6121 aaagactcct tcaatattta attaattggc agaagcaagt ctttgactga ttctgtcttg
     6181 ttcgttaaat cacgctattt attataccga aaaaacataa aaacgtcact ttttaa
//
LOCUS       DASDXX010000155         6184 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.155, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000155 DASDXX010000000
VERSION     DASDXX010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6184
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.155"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..135)
                     /locus_tag="U0280_002279"
     CDS             complement(<1..135)
                     /locus_tag="U0280_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HEM2272204.1"
                     /translation="MFKRILKSYDYAFIAVFIVLCLFGLIMIYSASWSLAIGKGLPAD
                     Y"
     gene            complement(317..598)
                     /locus_tag="U0280_002280"
     CDS             complement(317..598)
                     /locus_tag="U0280_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaN family protein"
                     /protein_id="HEM2272205.1"
                     /translation="MANKKIDHREEAVELLKQDAKRILQLIKVQMDNLTLPQCPAYEE
                     VLDTQMYGLSREINFATRLGLIEPEEGKKLMSTLEKELSTLHELSMSKK"
     gene            804..1034
                     /locus_tag="U0280_002281"
     CDS             804..1034
                     /locus_tag="U0280_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaI family protein"
                     /protein_id="HEM2272206.1"
                     /translation="MNAKCILCERVDELDNREFKTKQLRNKPIRMYLCPECEHRVAIN
                     TISRVNSGHFNFHKPVVMSNSELKNLIESAGK"
     gene            complement(1066..1944)
                     /locus_tag="U0280_002282"
     CDS             complement(1066..1944)
                     /locus_tag="U0280_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5068 domain-containing protein"
                     /protein_id="HEM2272207.1"
                     /translation="MMKKRIIILAVLVVLLIGGVVIGVYASGNSAKDNNESKTTAKKA
                     TSTPKKAIDTEKKETTTKEATTKDSVTDDKGVVTKGSSDVEKNAPAKNNSSATDKSNS
                     PTTPAFSLSSTGFKTSNVSSVLGGTVTTTYLSSAPSFEKIFENLTIEVNQYKVEHVVG
                     ANKAVSASNPESYLANKNGYVITLDISIKNTSAKDKMYKADQITLIGANEFVGGSLDN
                     FVPSNFHLIGSKADPNIFTAGKTARGLLTFTMTEAVYNDLAADSKIGVPNPDKFDASV
                     SEANAGDDVVASFPVK"
     gene            complement(2119..3957)
                     /gene="typA"
                     /locus_tag="U0280_002283"
     CDS             complement(2119..3957)
                     /gene="typA"
                     /locus_tag="U0280_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEM2272208.1"
                     /translation="MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERA
                     MDNNDLERERGITILAKNTAIKYEDTRVNIMDTPGHADFGGEVERIMKMVDGVLLVVD
                     AYEGTMPQTRFVLKKALEQNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQL
                     EFPVVYASAINGTSSYDSDPAEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDY
                     NDYVGRIGIGRVFRGTMHVGQTVALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGD
                     LVALAGMEDIFVGETVTPFDHQEALPLLRIDEPTLQMTFVTNNSPFAGREGKHVTSRK
                     IEERLLAELQTDVSLRVEPTASPDAWVVSGRGELHLSILIETMRREGYELQVSKPEVI
                     IREIDGVKCEPVEDVQIDTPEEFMGSVIESISQRKGEMKNMINDGNGQVRLQFMVPAR
                     GLIGYTTDFLSMTRGYGIINHTFDSYQPIQKGRVGGRSRGVLVSMETGKSTTYGTMQV
                     EDRGTIFIEPGTDIYEGMIVGENNREGDIAVNIVKAKQMTNIRSANKDQTNVIKKPRH
                     LSLEESLEFLNEDEYCEVTPESIRLRKKILNKNEREKAAKRSKTAE"
     gene            complement(4149..4922)
                     /locus_tag="U0280_002284"
     CDS             complement(4149..4922)
                     /locus_tag="U0280_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEM2272209.1"
                     /translation="MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNM
                     DKETEAFFVQQIKDHFPDHRLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFA
                     ISLAVYEDGIGQLAYIYDVARDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANL
                     SVTRKFPTMWEAVKASRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVE
                     ELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP"
     gene            5053..5667
                     /locus_tag="U0280_002285"
     CDS             5053..5667
                     /locus_tag="U0280_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YktB family protein"
                     /protein_id="HEM2272210.1"
                     /translation="MTFKGFSKKDFKTMQIPGLEARMNGIQTDIQPKFRAVGEELTTY
                     LSAKLGDEMFLHIARHQRRSVNPPESTWLAICHDKRGYKKHPHFQVGLFDNYLFIWLA
                     FIYENEESAKIANRFLKEKKLLADLPDNFAISPDHTEEKTYPVHDGQLKATLERFRDV
                     KKGEFLVGKIYLPDDSHLSPGKDFIKEAEMVLDELIPLYKASLQ"
     gene            5868..>6184
                     /locus_tag="U0280_002286"
     CDS             5868..>6184
                     /locus_tag="U0280_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2272211.1"
                     /translation="MHQIFKSDENGKLIELEEVTRNCWINIVAPTSEEINKIADNYEI
                     PLEFLEDPLDKDESARIERDDDSDSVLIVCDFPVVDEDDIHYASFETIPMGIIITKDY
                     FIT"
BASE COUNT         1830 a         1206 c         1077 g         2071 t
ORIGIN      
        1 ataatctgcc ggtaagcctt taccaattgc taaagaccag ctggcactat agatcataat
       61 aagcccaaat aaacatagca cgataaatac cgctataaat gcataatcat aagattttaa
      121 aattcgttta aacatcggca tcgtccaatc cctgagaagt tactatccca tcttgttttc
      181 tattcttcct attataaagg aaaagacctc caaatgaaaa gaagaatcgc ctccttcttt
      241 tggctcattt tttaatcttt cgctggcaaa caaaaaaaga tgtcagaaaa aatcagacat
      301 cttttcaatt gattcattat tttttactca tggacagttc atgtaaagtg gacaattctt
      361 tttccagtgt agacattagt ttcttgcctt cttctggttc aattagtcct aggcgggttg
      421 caaagttaat ttcacgtgat aaaccataca tttgtgtatc aagaacttcc tcatatgctg
      481 gacattgcgg taatgttaga ttatccattt gaactttaat caactgtaag attcgttttg
      541 cgtcttgctt taaaagctcc actgcctctt ctctgtgatc tatcttttta tttgccatca
      601 cagaaccccc tatcatacgc caaaagtagc gctttatttt catctcaagg aaaaacctta
      661 agtaaaagtt aatactagat agtactagta tagcataatt tatttaccac gcaagcacga
      721 tctaattaaa atttttgaaa aattcacttt tactcgcctt tttcgataat catgctataa
      781 tacttgtgtg aggtgaagac aaattgaacg caaaatgtat cttgtgcgag cgtgtagatg
      841 agctagacaa tcgcgaattt aaaacaaaac aattacgtaa taaacctatt agaatgtatc
      901 tatgtcctga atgtgaacat cgagtagcta ttaacactat cagtcgcgtt aattctggtc
      961 atttcaattt tcataaacca gtagtaatgt cgaatagtga gttaaagaat ttaatagaaa
     1021 gtgctggaaa atagagaaaa tccgcccttt atcgggcgga tttttttatt ttactgggaa
     1081 tgaggcaact acatcatcgc ctgcattagc ttcagaaaca cttgcatcaa atttatcagg
     1141 atttggaaca cctatttttg agtcagctgc taaatcattg tacacagctt ctgtcattgt
     1201 aaatgtaaga agcccacgag ctgtttttcc agcggtgaaa atatttggat ctgctttact
     1261 tcctataaga tgaaaattag aaggaacaaa attatctaag cttcctccta caaattcatt
     1321 tgctcctata agtgtaattt ggtctgcttt gtacatttta tcttttgcag aagtattttt
     1381 aatggaaatg tctaaagtga ttacatagcc gtttttattt gctaaatagc tttctggatt
     1441 acttgcacta actgctttat tcgcaccaac aacatgctct actttatatt gattcacttc
     1501 aatcgttaaa ttttcaaaga ttttttcgaa tgatggggca ctcgacaaat acgttgttgt
     1561 tacagttcca ccaagaacag aagatacatt ggaagttttg aagcctgtac tagataacga
     1621 aaaagccggt gtagttggac tattgctttt atctgttgca ctactattat ttttggccgg
     1681 tgcgtttttc tctacatctg agcttccttt tgtgactaca cctttatcat ccgttacgga
     1741 atcttttgtt gtcgcttctt tggttgttgt ttcttttttc tctgtgtcaa ttgctttctt
     1801 aggtgtagat gtggcttttt tagctgttgt tttgctttca ttgttgtctt ttgcagagtt
     1861 tccgcttgca taaacaccga ttacaactcc tccgataaga agtaccacta atactgcaag
     1921 aataattata cgttttttca tcatactaac caccttttct acttacttct aatataccaa
     1981 atagcttttc atattacaat agtgttacaa acacattatt ttattccctt ttccagcaaa
     2041 ttaaagcata aaaaaaccaa atagttttta aaggatattc ctaccactta aaaaccattt
     2101 ggccgattca aatatatatt attcagcagt ttttgaacgt tttgctgctt tttcacgttc
     2161 gtttttgttt aggatttttt tacgtaaacg gatggattct ggtgttactt cacagtattc
     2221 atcttcgttt aggaattcta atgattcttc tagtgataaa tgacgaggtt ttttgattac
     2281 gtttgtttgg tctttgttag cagaacgaat gttagtcatt tgttttgctt tcacaatgtt
     2341 tacagcgata tcgccttcac gattgttttc cccaacgatc ataccttcgt aaatatccgt
     2401 accaggttct ataaaaatag taccacggtc ttctacttgc attgttccgt aagtagtaga
     2461 tttacctgtt tccatggata caagaacacc acgactacgt ccgccaacgc gtcctttttg
     2521 gattggttgg tagctatcga atgtgtggtt gataatacca taaccacgag tcattgaaag
     2581 gaaatcagtt gtataaccga ttaagccacg agctggaacc atgaattgta aacgaacttg
     2641 gccgttaccg tcgttaatca tgtttttcat ttcgccttta cgttggctaa tagattcaat
     2701 aacagaaccc atgaattctt ctggagtatc aatttgaaca tcttctactg gttcacattt
     2761 cacgccatca atttcacgga tgattacttc tggtttagaa acttgtaatt cataaccttc
     2821 gcgacgcatt gtttcgatca gaatggataa atgaagctca ccacgaccag aaactaccca
     2881 agcgtctgga gaagctgttg gttcaacgcg taaagataca tccgtttgaa gttctgcaag
     2941 taagcgttct tcaattttac ggcttgttac gtgtttacct tcacggcctg cgaaaggact
     3001 gttatttgta acaaaagtca tttgcaatgt tggctcatca atacgtaaaa gtggaagtgc
     3061 ttcttggtga tcgaaaggtg ttactgtttc accaacgaaa atgtcttcca ttcccgcaag
     3121 tgctactaag tcacccgctt ttgcttcttt aatttcgtca cgttttagtc cgaagaaacc
     3181 gaacattttc gttacacgga attgttttac tgtgccatca agtttaatta aagcaactgt
     3241 ttgtcccacg tgcattgttc cacggaatac gcggccaata ccgatacgac caacatagtc
     3301 attataatca agtaatgata cttggaattg taatggttcg tcgctattat caactggagc
     3361 cgggatatgt tcgataattg tgtctaaaag tggtttcatt gtttcttttt gttctgctgg
     3421 atcagaatca tagcttgaag ttccgttgat tgcagaagca taaacaactg ggaattctaa
     3481 ttgatcgtcg ttcgcaccta attcgatgaa taattctaat acttcatcaa caacttcttc
     3541 tgggcgagca aaatcacggt caattttgtt tactacaacg atcggtgtta agttttgttc
     3601 tagtgctttt tttagtacaa aacgtgtttg aggcatagta ccttcatacg cgtccactac
     3661 taaaagaaca ccatctacca ttttcatgat acgttctact tctccaccga aatcggcgtg
     3721 tccaggtgta tccatgatgt ttacacgtgt atcttcatac ttaatcgctg tatttttcgc
     3781 taaaattgta ataccgcgtt ctctttctaa atcattgttg tccattgcgc gttctgcaac
     3841 tgtttcattg tcgcggaatg tgcctgactg gcgtagtaat tggtctacta gagttgtttt
     3901 accatggtca acgtgggcaa taattgctac attacgaata tcatttctta aattcaatct
     3961 tgtttcctcc taaattaaaa atccaaacat ttatcgtgaa gattagccaa aagaaagagg
     4021 aaaatagatt tattttcctc cgtcgctatc gtctcgttta aatcaactta cctattatag
     4081 catagctgag cggatttggc acgattttta ttttctgaaa acaagttttt ttatgttgag
     4141 cgctttcttt aaggcaggta gttatctaat aaggtttgat ggatttttgg cgatgctaca
     4201 atagaacttc ctttttctaa catattgatt ttttcaccat taatccgtgt cactttcccg
     4261 cctaattctt cgacgataat ttttccagca gctatatccc acggggctaa attagcagaa
     4321 agataggctc ccgctcgtcc agtagcaaca tccatatatt ccagtgaagc tgctccgtgt
     4381 aatcgtaatc ctctagaagc ttttaccgcc tcccacatgg ttgggaattt tcttgtcacg
     4441 ctcaaattag caattaatag cgtatctttt aggtctattg ctgggtcaag tttagggata
     4501 gttctgccgt ttactgtagc accttttcct ttttctccaa aatacagctc atcgcgtgca
     4561 acgtcataaa tataagcaag ctgccctatt ccatcttcat aaactgcaag tgaaatcgca
     4621 aaatcgcgtt gctgttcaac aaaattcaat gtcccgtcaa ttgggtcaag aatccaaacc
     4681 actccatcta aatctgttac atctgacgcc attccttctt caccaaataa acgatggtca
     4741 ggaaaatggt ctttaatttg ttgaacaaaa aaagcttcgg tttctttatc catattcgtc
     4801 actaaatcat ttcgaccgga tttgacatca atgtctagtg tttctttgaa agattgttta
     4861 attttcgctg cggcttccat gatccataac cttgctaaat aatctatttt ttcgctgtcc
     4921 ataaacacac ctcttcgcac tctttttgtt tattttatca caaaaatgaa ttatctgaat
     4981 agaacaagat tctttcactt agaacttaac ttccgtataa tgaaactata tgcaaaatta
     5041 ggaggaaaac agatgacttt taaaggattt agtaagaaag attttaaaac aatgcaaatt
     5101 cctgggcttg aagcacgtat gaacggaatt caaacggata tccaaccaaa attcagagct
     5161 gttggggaag aattgactac ttatttaagt gccaagcttg gcgatgaaat gtttttacat
     5221 attgctcgtc accaaagacg ttcagttaac ccacccgaaa gcacttggct ggccatttgc
     5281 catgataaac gtggatataa aaagcaccct catttccaag tgggtctatt cgataattat
     5341 ttattcattt ggctcgcttt tatttatgaa aatgaagaaa gcgcgaaaat cgccaatcgc
     5401 ttcttgaaag aaaagaaatt attggctgat ttaccggata actttgccat ttctccagat
     5461 cacacagagg aaaagacgta tccggtacac gacggacaac taaaggccac gcttgaacga
     5521 ttccgtgatg tgaaaaaagg agaattctta gttgggaaaa tttatctacc agatgatagc
     5581 catttatccc cagggaaaga cttcattaaa gaggcagaaa tggtccttga cgagctaatt
     5641 ccgctctata aggcttccct tcaataaaag atgtacaaat gactataatc taggtataat
     5701 ggtagagttg tgaattacta tggtttgaag gagttgagga acgtgaaaaa ggagcagcaa
     5761 acagcaagtg accctggtcc acatcgaagt attcatacag gtgatttttc acgggaacga
     5821 aactctaacc gcgtgaaatt tacctgttaa aaaaggaggt aaaaagcatg catcaaattt
     5881 tcaaatcaga tgaaaacggc aaattaattg aattagaaga agtgacgcgc aattgttgga
     5941 ttaatattgt tgctccaact tccgaagaaa ttaataaaat tgccgataac tacgaaattc
     6001 cactagagtt cttagaagat ccactagata aagatgaaag tgcccggatt gaacgcgatg
     6061 acgactcgga ttccgtttta atcgtctgtg actttccggt agttgatgaa gatgatattc
     6121 attacgcttc attcgaaacc attccaatgg ggataattat tacaaaggat tattttatta
     6181 caat
//
LOCUS       DASDXX010000156         6127 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.156, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000156 DASDXX010000000
VERSION     DASDXX010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6127
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.156"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            177..803
                     /gene="isdC"
                     /locus_tag="U0280_002287"
     CDS             177..803
                     /gene="isdC"
                     /locus_tag="U0280_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme uptake protein IsdC"
                     /protein_id="HEM2272212.1"
                     /translation="MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGD
                     SDSVSMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGSAVSVTSKNTANDTR
                     KVSFPVSTLSSPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDT
                     ATPATKSDSSNKVANPKSSDSSQMFLYGIIFVAAGTGLVLLKRRAIFK"
     gene            816..2525
                     /gene="hbp2"
                     /locus_tag="U0280_002288"
     CDS             816..2525
                     /gene="hbp2"
                     /locus_tag="U0280_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin/hemoglobin-binding protein Hbp2"
                     /protein_id="HEM2272213.1"
                     /translation="MKKLWKKGLVAFLALTLIFQLIPGFANAADSRLKDGGEYQVQVN
                     FYKDNTGKTTKESSEADKYIDHTATIKVENGQPYMYLTITNSTWWQTMAVSKNGARPE
                     KPAQADVYQDRYEDVQTVSTDAAKDTRVEKFKLSSLDDVIFSYMHIKVDAISYDHWYQ
                     VDLTIDPSTFKVISEPAITTPVTLSDGIYTIPFVAKKANDDSNSSMQNYFNNPAWLKV
                     KNGKKTVAMTVNDNKTVTALKTNLAGALQDVKVVSEDKDANTRIVEFEVEDLNQPLAA
                     HVNYEAPFNGSVYKGQADFRYVFDTTKATAASSYPGSDETPPVVDPGETKPPVTKPDP
                     GTTNPPVTTPPTTPSKPAVVDPKNLLNNHTYSIDFDVFKDGTTETSMMESYVMKPALI
                     KVENNQPYVYLTLTNSSWIKTFQYKANGVWKDMEVVSGDINKNTRTVKYPVKDGRANT
                     DVKTHVLIEDMPGFSYDHEYTVQVKLNAATIKDITGEDVTLKEPVKKDILNTGNVANN
                     NNAGPKLAKPDFDDTNSVQKTASSTEKNAKTNDSSSMAWYVTLFGASFLYLAYRLKRK
                     RLS"
     gene            2612..3484
                     /gene="isdE"
                     /locus_tag="U0280_002289"
     CDS             2612..3484
                     /gene="isdE"
                     /locus_tag="U0280_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     IsdE"
                     /protein_id="HEM2272214.1"
                     /translation="MRKMAVISLMLLLFLVGCGKEEAAQKPEQKSEKEPKIVATTVAI
                     TEIMDKLDLPLVGIPTSSKKLPERYADVKETGSPMGPDLEIIRMLKPDMVLSTKTLEA
                     DLKAGFEGADLKADFLDFTSIASMQTEIKKLGAEFDRKEEAAKLNGDLTNEIDKVKSS
                     VAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQS
                     ANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGMTASLNA
                     PEALQEMEKMLYDN"
     gene            3474..4463
                     /locus_tag="U0280_002290"
     CDS             3474..4463
                     /locus_tag="U0280_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2272215.1"
                     /translation="MTIKQKSSFGAVIILLIGTILWAVQAGSLSMSIPAFLSGVFSGG
                     NEMVNVVIDLRFPRIIIALLAGAALSVSGLLLQAVMRNPLADAGVIGISAGAKFFSFV
                     IILFLPELYFWLPLFSFIGGALAFFLVFLFSYRSDFNPLRFIIIGIAINAVFTGLSDA
                     LSSQVALVSSQSASSAASLAMKKWSDVETLLIYVTIGLICALLLAKWCNVLGLENKMA
                     RGFGVPVNKTRIWLALIAVLLASITTAVVGVIAFVGLLVPHIARKLVGGNYQILVPFS
                     ILFGALLLLFADTLGRTLFQQMEIPASVIMLIIGGPFLIFLMRKGDFYGSKGR"
     gene            4444..5223
                     /locus_tag="U0280_002291"
     CDS             4444..5223
                     /locus_tag="U0280_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272216.1"
                     /translation="MEVRDVNFSYNGTESTLKNVSFTIQKNKINTIVGPNGSGKSTLL
                     EILARLLSPDSGDVLLEGKSIFEWKAKEFAQNVAIVHQNNVLPNELTVKELLYFGRLP
                     YKNWRMTRTKADDLAVEQALMQTELTEKAEKFVDSLSGGERQRVFIATALVQDTPILL
                     LDEPTTFLDMYFQLEILELVKRLNQEKNLTIVMILHDLNQALMYSDHLIVMKNGKVVA
                     KGVPGELLTTELIAETYGVVAKVLNDANTGKYIVPQKRKEF"
     gene            5227..5967
                     /gene="srtB"
                     /locus_tag="U0280_002292"
     CDS             5227..5967
                     /gene="srtB"
                     /locus_tag="U0280_002292"
                     /EC_number="3.4.22.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class B sortase"
                     /protein_id="HEM2272217.1"
                     /translation="MKIKSFLGKSLTLVVLVVFLFSGWKIGMELYENKHNQTILDDAK
                     AVYTKDVATTNVNGEVRDELRDLQKLNKDMVGWLTIADTEIDYPILQSTDNDYYLHHN
                     YKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLAAHPTFS
                     YESGLANYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSMYKLNVKVSGKD
                     RIITLSTCDTEKDYEKGRMVIQGKLVTK"
BASE COUNT         1965 a          887 c         1390 g         1885 t
ORIGIN      
        1 tattcatggt ttttttgcgt ttttaatttg tgaaaaagca atctgttgtt gacaatgata
       61 atcattatca attaaaatga taattaacgt atccttttac ataaactttt actccacttt
      121 tattagtggg ggttttttat aaatagtagt ttttattaaa gaagggagat ttaagtatga
      181 agaaagtttt agttttggct gcttttattg ccttattcag tttttcgttt ctttctacgg
      241 gattaacggc acaagctgct cttaaggatg gcacctattc ggttgattat acggtactac
      301 aaggggatag tgattccgta tctatggcga atgactattt tgataagcct gcaacggtaa
      361 ctgtaaatgg aggcaaatct actgttagtt tgcaagtgaa ccatagtaag tggattactg
      421 gtttatgggt cgaaggtagt gcggttagcg tgacttcgaa aaatacagcg aatgatactc
      481 gaaaagtgtc gtttcctgtg tcgactttaa gtagtcctgt taatgcaaaa atcaaagtag
      541 atattgatga tgacgattta aattatcatc atgagtatca aatcaagtta cgttttgatg
      601 aaggttctgc taaagcatta gctggcgcgg taaagtcttc tgataataac gatacagcaa
      661 ccccagcaac aaaaagtgac tcaagtaata aagtagcaaa tccgaagtct agtgattcta
      721 gccaaatgtt tttatatgga attatttttg ttgcagcagg gacagggtta gttttactta
      781 aaagacgtgc gatttttaaa taaaggggga ttatgatgaa gaaattatgg aaaaaaggtt
      841 tagtagcttt cttggctttg acacttattt ttcaattgat acctggtttt gctaatgcgg
      901 ctgattctcg tctgaaagat ggcggggaat accaagttca agtgaatttt tataaagata
      961 atacagggaa aacaacgaaa gaatcttcag aggcagataa atatattgac catacagcaa
     1021 cgattaaagt agaaaatggt caaccttata tgtacttaac aattacaaat agtacttggt
     1081 ggcaaacaat ggcggtttca aaaaatgggg ctcgtccaga aaagccagca caagcggatg
     1141 tttatcaaga tcgttatgaa gatgttcaaa cagtgagcac agacgcagcg aaagatacgc
     1201 gtgtagagaa attcaagctt agttctttag atgatgttat tttctcttat atgcatatta
     1261 aagtagatgc aattagttat gatcactggt atcaagtgga tttaaccatt gatccaagta
     1321 ctttcaaagt tatttcagaa ccggctatta caacacctgt gactctttcg gacggaattt
     1381 acacgattcc ttttgtagcg aaaaaagcaa atgatgatag caactcaagc atgcaaaatt
     1441 attttaataa tcctgcttgg ctgaaagtga aaaatgggaa gaaaactgtt gcaatgacag
     1501 taaatgataa taaaacagta acagctttaa aaacaaatct tgctggagct ttgcaagatg
     1561 tcaaagtagt ttctgaagat aaagatgcaa acacgcgtat tgtggaattt gaagtggagg
     1621 atttaaatca accacttgcg gctcatgtta attatgaagc gccgttcaat ggttctgtat
     1681 acaaaggaca agcagacttc cgttatgtgt ttgatacaac gaaagcaact gcggctagtt
     1741 cgtaccctgg tagtgatgag acgcctcctg tagtagatcc aggcgaaaca aaaccaccag
     1801 taacaaaacc tgatccaggt acaacgaatc caccagtgac tacgccgcca acaacaccaa
     1861 gtaaaccggc agtagttgat cctaaaaatt tactgaataa ccatacgtac tccattgatt
     1921 ttgatgtatt taaagacgga acaacggaaa cttctatgat ggaaagctat gtgatgaaac
     1981 cggctttaat caaagtagaa aataaccaac cttatgttta tttaacttta acaaacagta
     2041 gctggattaa aactttccag tataaagcaa atggtgtttg gaaagatatg gaagttgttt
     2101 ccggagatat caacaaaaat acgagaaccg tcaagtatcc tgtaaaagat ggcagggcta
     2161 atacagatgt aaaaacgcat gtattaattg aagatatgcc aggcttctct tacgaccatg
     2221 agtatacggt tcaagtaaaa cttaatgcag caacaattaa agatattacc ggggaagatg
     2281 taacgttaaa agaaccggtg aaaaaggata ttttaaatac tggcaatgta gcgaataaca
     2341 ataatgctgg gccaaaattg gcaaaacccg attttgatga cacaaattct gttcaaaaaa
     2401 cggcaagtag cacagaaaaa aatgcgaaaa cgaatgattc atcaagtatg gcatggtacg
     2461 ttacgttatt tggagcttcc ttcctttatt tagcttatcg attaaaacgt aaaagattga
     2521 gttaataaaa ctagtaaaag cgagttaggt tgggggtttc ctttgcttaa ctcgctttac
     2581 cgattttatt ttataaatgg gggaattagt gatgaggaaa atggctgtca tatctttgat
     2641 gttattactt tttttagttg gctgtggaaa ggaagaggcg gctcaaaagc ctgaacaaaa
     2701 atcggagaag gagccaaaaa ttgtggcgac tacggtagcg attacggaaa ttatggataa
     2761 acttgatttg ccactcgttg gaattccgac tagttctaaa aaacttccgg agcgttatgc
     2821 agatgtaaag gaaactgggt cgcctatggg gcctgatttg gaaattattc ggatgttgaa
     2881 gccagacatg gtcctttcaa cgaaaacgct agaagcggac ttaaaggctg ggtttgaagg
     2941 ggccgattta aaagcggact ttctagactt tacgagtatt gcctcgatgc aaacagaaat
     3001 taaaaaactt ggagcagaat tcgatcgtaa agaggaagca gctaaattaa atggtgattt
     3061 aacgaatgag attgataagg tgaagtcgag cgtggcgaaa aagaaaaagc caactgttct
     3121 tattctgatg ggggttccgg gcagctactt agttgtaacg gaacatgcgt atattggtga
     3181 tttggtcaaa cttgctggtg gagaaaatgt cattaaggac caaaaagtag aatatttagc
     3241 ttctaataca gaatacttac aaagtgccaa tcctgatatt attttgcggg cggctcatgg
     3301 tatgcctgct gaagtggtta aaatgtttga cgaggaattt aaaacaaatg atatttggaa
     3361 acattttgat gcggtgaaaa ataatcgggt gtatgatttg gatgaaaatt tatttggtat
     3421 gacagcgagt ttgaatgcac cagaagcact acaggaaatg gaaaagatgc tttatgacaa
     3481 ttaagcaaaa aagttctttt ggggctgtaa ttattttatt gattgggact attttgtggg
     3541 cagttcaggc gggaagtttg tcgatgtcga ttccagcttt tttgagtggg gtttttagtg
     3601 gcggaaatga gatggtgaat gtcgtgattg atttgcgatt tccgcgaatt attattgccc
     3661 tgctagctgg tgcggcgcta tcggtttcag ggttgttact tcaagctgtg atgcggaatc
     3721 cgcttgctga tgctggggtg attgggattt ctgcgggtgc gaaatttttt agttttgtga
     3781 ttattttatt tttaccggaa ttatattttt ggttgccact tttttctttt attgggggag
     3841 cactggcttt ttttctagtc tttttgttta gttatcgttc tgattttaat ccgcttcgtt
     3901 ttattattat tgggattgcg attaatgcgg tttttacagg gctgagtgat gcgttatctt
     3961 cgcaagtggc gcttgtttct agtcagtcgg ccagtagtgc tgcaagtttg gcaatgaaaa
     4021 aatggtccga cgtggaaact ttattgatat atgtaacgat tggactgatt tgcgcgcttt
     4081 tacttgctaa atggtgcaat gtgttggggc ttgagaataa gatggctaga ggctttggtg
     4141 tgccggttaa taagacacgt atttggctgg cattgattgc tgtactcctt gcgtcaatta
     4201 ccacggcggt agttggtgtt attgcgtttg ttggtttact tgtaccacat attgccagaa
     4261 aactagttgg cggaaattat caaatacttg tgccgttttc aatattattt ggggctttat
     4321 tgctactttt cgcggatacg ctaggcagaa cgttatttca gcaaatggaa atcccggcat
     4381 ctgtgattat gcttattatt ggtggtccat tcttaatctt tttaatgcga aagggtgatt
     4441 tttatggaag taagggacgt taattttagt tataatggaa cagagtctac cttaaaaaat
     4501 gtctcattta cgatccagaa aaataaaatc aatacgattg ttgggccaaa tggtagtggg
     4561 aaatctactt tattagaaat tttggctaga cttctttcgc ctgattctgg ggatgtttta
     4621 ctggaaggga aatcgatttt tgaatggaaa gcaaaagaat ttgcgcaaaa tgtagcgatt
     4681 gttcatcaaa ataacgttct tccgaatgaa ctaacggtga aggaattgct ttactttggt
     4741 cgtctacctt ataaaaattg gcgaatgact cggacgaagg cggatgatct ggctgttgag
     4801 caggctttga tgcaaacgga gctaactgaa aaagcggaga aatttgttga tagtctttct
     4861 ggaggagagc ggcagcgtgt ttttatagca acagcattgg ttcaagatac acctattttg
     4921 ctgttggacg agccgacgac atttctggac atgtattttc aactagaaat tttagagtta
     4981 gtaaaacggt taaatcaaga aaaaaatttg actattgtaa tgattttgca tgacttaaac
     5041 caagcgttga tgtatagtga ccatttgatt gtgatgaaaa atgggaaagt ggttgcaaaa
     5101 ggagtaccag gagaattact aacaacggag ctgattgctg aaacttatgg tgtagttgcg
     5161 aaggttttaa acgatgcgaa cactgggaaa tacattgttc ctcaaaagcg aaaggagttt
     5221 taaagagtga aaataaaatc gtttttgggg aaaagtttga ccttggttgt gttagtggtt
     5281 tttctttttt ctggatggaa aattggaatg gaactgtatg aaaataagca taaccagaca
     5341 atcctagatg atgcgaaagc tgtttacaca aaagatgttg ctactacaaa tgtgaatggt
     5401 gaagtacgtg atgagcttag agatttgcaa aaattaaata aagatatggt tgggtggctg
     5461 acgattgcag atacggaaat agattatcca attttgcaaa gtacggataa tgattactat
     5521 ttacatcaca attataaaaa tgaaaaagca cgagcgggca gtatttttaa agattatcgg
     5581 aatacgaatg agtttttgga taaaaatacg atcatttatg ggcataatat gaaagacgga
     5641 tccatgtttg cggatttacg taaatacttg gacaaagatt ttttggcggc tcatccaacg
     5701 ttttcctatg aatcgggctt ggcgaattat gaagtggaaa tctttgctgt gtatgaaacg
     5761 acgactgatt tttattacat tgaaacagaa tttccggaaa caactgattt tgaggattat
     5821 ttacaaaaag tgaaacaaca atctatgtat aaattaaatg taaaagttag tggaaaggac
     5881 cgaattataa cactttcaac ttgcgataca gaaaaagatt atgaaaaagg acggatggtt
     5941 attcaaggaa aattagtaac aaaatgagaa agcaccaaaa tataataaca tttggcgctt
     6001 tttccttttt tggaaagggt gcgaacgatg aaactatatg aactaaccga taattattta
     6061 aaagtacaag aatttttgga agaaaataat actgatgctg tgaaagatac gttagatgcg
     6121 cttactg
//
LOCUS       DASDXX010000157         6040 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.157, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000157 DASDXX010000000
VERSION     DASDXX010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6040
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.157"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            78..1271
                     /locus_tag="U0280_002293"
     CDS             78..1271
                     /locus_tag="U0280_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEM2272218.1"
                     /translation="MNRRERRKHKRRKNMIIVLSTVFLLFIATSWMIYEFKSKQEQTV
                     SAPTKKKAATATNPPENAATNEPEETKEPEPVEEKPKETIVKNQEIDNYLQKIGFSGS
                     ALVVRDGETIIQKGYMYANRDEKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTN
                     DPISKYIPDFPNGNKILVKNFMNHTSGIVGRPKLTSNMTPDQIIKAIEKRGIKSQPGK
                     WDYLDANYAVVGYLVEKVSGQPLATYLQENIFTPAGMKHTGYYQKDVDGGKNVSTGYK
                     IDENGVFQSPKLADLTKLYGAGDISMSTTDMYLFDKALMDKKLISEASLKKMFTSGSK
                     STYGMGFYVDPGSYNSHGVVTGWDVSNSVSHTGRTYVILFSNVQNHIASFGKVNNDIY
                     GFLNK"
     gene            complement(1312..2232)
                     /locus_tag="U0280_002294"
     CDS             complement(1312..2232)
                     /locus_tag="U0280_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2272219.1"
                     /translation="MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTD
                     TMDRKVEVPTTPKRIVALQNVSEMEILGVKPVGTTDYYITTYPEATKGTESVGNDKPS
                     IEKIANLKPDLIIISDYQKDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKE
                     KWDKDYAASSKEAKATLKDAGVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTD
                     AAKANKETKAISSEAIPEYAAGADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQV
                     YKVDNTKWSDYSASAQLYQMEDAVKQITGK"
     gene            complement(2343..2693)
                     /locus_tag="U0280_002295"
     CDS             complement(2343..2693)
                     /locus_tag="U0280_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HEM2272220.1"
                     /translation="MTISKIMEIGPLVPAFEEEKIVILFGPTATNELREISVIHEFQD
                     VPNNALTKGNTLLIGEQAYTIEEVGSDANKNLEELGHISVYFRSGQNEVLPGAIVVSP
                     EIFPTITVGDSIQF"
     gene            complement(2712..3698)
                     /locus_tag="U0280_002296"
     CDS             complement(2712..3698)
                     /locus_tag="U0280_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HEM2272221.1"
                     /translation="MYQSIHVNKGQGGWGVGLDITPSEPRTKVVSITGGGIHPVALKI
                     AELSGAEAVDGFKNSIPEEEMMCVVIDCGGTARIGVYPMKRIPTVDVLPSSPSGPLAK
                     HITEDIFVSGVKPEDIEVRDRSTEPGKPFDREKFKEDYAKIKEDQEEASQLKEGFLVK
                     FSRGIGKAMGVFYQAGRDSVDMLIKNIIPFMAFISMIIGIINYTGIGKLIANTLSPLA
                     GSLWGMLLIAFICSLPFLSPILGPGAVIAQVIGVLIGSQIAIGAIPVTYALPALFAIN
                     AQAGCDFIPVGLSLAEAKPKTVQFGVPAILYSRMITGVLAVVIAWVFSIGMY"
     gene            complement(3719..4240)
                     /locus_tag="U0280_002297"
     CDS             complement(3719..4240)
                     /locus_tag="U0280_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HEM2272222.1"
                     /translation="MNYIEWFGTNFIGLFEAGGKQFVSFMTGIVPLLIVLLTFTYSII
                     AFIGEERVNRAIQFSAKNMILRYTLMPVLSVLMLTNPMAYTFGRFVKEHQKPAFYDSV
                     VSFLHPVTGLFPYANAGELFVYLGIANGVVEAGYSMSSLAVRYFLAGIVVILMRGVIT
                     ESITKFLMRKEKV"
     gene            complement(4265..4645)
                     /locus_tag="U0280_002298"
     CDS             complement(4265..4645)
                     /locus_tag="U0280_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HEM2272223.1"
                     /translation="MNIVLIASLIFIAQTGLAFFQVRYYQHHMNKVADKYAGKTGYYL
                     YSEMERLKFRTSAVAILVVNENRVVHECQILTGKTVFAKFKTFTNYHHKDLSEILTDL
                     SSKNKNTIQEKAIIKTVNSCMKAL"
     gene            complement(4700..5950)
                     /locus_tag="U0280_002299"
     CDS             complement(4700..5950)
                     /locus_tag="U0280_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2272224.1"
                     /translation="MTLYRQLLARENENNPIRVGVIGAGQMGFGMISQIAAIPGMSIV
                     GISDIHVEAAQKAADAYNATATKKEKILLSNDFKEIIHSDLVEVIVDATGVPEVGAKI
                     SLETLLAKKQLVLLNVEIDITIGPLMKKLYDSAGLVYTGSDGDEPAAITELYEFSKSM
                     GMEVLVAGKGKNNKLKISANPDSCQAEADGKNMASHMLAAFQDGTKTMAEMNLLSNAI
                     GYVPDVVGMHGISGDVDSVIKDLDLKDQGGILNKFGVVEYVDGLAPGVFVIVKGQNEG
                     VSHELSYLMKKGDRDHHILYRPYHLASLETPLTIAKAVLNHDHAIVPMGAPVSETVAV
                     AKKDIAAGEKLDGIGGFCVRGVLETHVDMATNGHIPIGLISGEVVARRNIKAGTFITD
                     EDVSLDESTTVWKLRKLQDETFNK"
BASE COUNT         1897 a         1171 c         1103 g         1869 t
ORIGIN      
        1 aatttgggat attttctatt aatacattct cttttgggaa agtcatttaa cgattagact
       61 agaccaggag tgatgaaatg aatcgacgcg aaagacgtaa acacaaaaga cgcaagaaca
      121 tgattatcgt gttgagtact gtatttctac tgtttattgc cacaagttgg atgatatacg
      181 aattcaaaag taaacaagag caaacagtat ccgcacctac taagaagaaa gcagcaaccg
      241 caacaaaccc accggaaaat gcagcaacta atgagcctga agaaacgaaa gagcctgaac
      301 cagtagaaga aaagccaaag gaaacaattg taaaaaatca agaaattgat aactatttac
      361 aaaaaattgg ttttagtggt tcggcactgg ttgttcgcga tggagaaact atcatacaaa
      421 aagggtatat gtatgcaaat cgtgatgaaa aagtattgaa tacaccagat actttgtttt
      481 atattggctc ttctcaaaaa gcaatcatag caacggcact tttacaatta gaagaaaaag
      541 gtaaaataaa tacgaatgat ccaatttcga agtatatacc tgactttcct aatggtaata
      601 agattttagt gaagaacttt atgaatcata catctggtat agttggacga ccaaaattaa
      661 cgagtaatat gacaccggat caaattatta aagctattga aaagcgagga attaaatcac
      721 aacctgggaa atgggattat ttggatgcta attatgctgt agtaggttat cttgtagaaa
      781 aagttagtgg gcaaccttta gctacctatc ttcaagaaaa tatatttacc cctgcaggaa
      841 tgaagcatac aggatactat caaaaagatg ttgatggggg aaaaaacgta tcaacaggct
      901 ataaaattga tgaaaatgga gtctttcaaa gtccaaagct tgcagactta acgaaattat
      961 atggtgcagg ggacattagt atgtctacaa cggatatgta tttgtttgac aaagcattga
     1021 tggataaaaa attgatttct gaagcaagtt tgaaaaaaat gttcacatca ggaagcaaat
     1081 caacttatgg aatgggattc tatgtggatc caggtagtta taatagtcac ggagttgtga
     1141 ccggttggga cgtatctaat agtgtcagtc atacaggaag aacttatgtt atattattct
     1201 ccaacgtcca aaaccacatt gcttcattcg gaaaagtgaa taatgatatt tatggtttct
     1261 taaataaata ataaaaaaaa ccgattctat ttgtagaatc gggttttttt attatttacc
     1321 agtaatttgt tttacagcat cttccatttg ataaagttga gcagaggcac tgtagtcact
     1381 ccatttagta ttatccactt tatacacttg gtttttcttc acagctggaa tatctttcca
     1441 aacacctttt agcatttcat ccacagaatc ggtattgcca tcagctggca ttaagataaa
     1501 gagacgatct gctcctgctg catattcagg aattgcttca ctagaaatag cttttgtttc
     1561 tttgtttgct ttagcagcat ctgtcggtgt gaaacctgcg ccggagtata agccgtcaaa
     1621 gacttttgca tcgtgcacat agatttcttt gccataaaat tgaattactg ccgctttttc
     1681 gttcgcaaca ccagcatctt tgagtgttgc ttttgcttct ttagagcttg ccgcgtaatc
     1741 tttgtcccat ttttcttttt ctgctttttt atttaagaga ttggcaatgt tcgaaagttg
     1801 tttgtccgga gtatcaccaa aatgcgtgat ataaacagga gccacttttt ccaagttctc
     1861 taaaagatcc ttttggtaat cactaataat aattaagtct ggttttaaat tagcgatttt
     1921 ttcaatacta ggtttgtcat taccaacact ttcggtccct tttgttgcct cagggtatgt
     1981 agtgatgtaa taatcagttg taccaacagg tttaacgcca agaatttcca tttcacttac
     2041 attttgaagt gcgacaattc ttttcggtgt tgttggaact tctactttac ggtccattgt
     2101 atcagtgacc gtttttgttg cggattcctt ttctttgctt gagtctttat ccgaagaact
     2161 gccacaagcg gttaatacta ctgctaaaag cacagtcatc aaaatagcag cccatttatg
     2221 cttttggtac attgtgtatt tcctccctaa ttgaaaatga ttttcattat cgttacaaaa
     2281 gtaattatat cgaaaacagg gaggattgac aaggtgaaat gtagcacaaa aaatttttat
     2341 gtttaaaatt gaatactatc gccaaccgta attgttggaa aaatttctgg agaaacaaca
     2401 atagctcccg gtaaaacttc attttgtcct gagcggaaat agacggaaat atggccaagt
     2461 tcttcgagat ttttgtttgc gtctgagccg acttcttcta ttgtatacgc ttgttcacca
     2521 atgagtaacg tgttcccttt tgtaagggcg ttattcggta catcttggaa ttcgtgtata
     2581 acagatattt cgcgtaattc attggtagca gttggtccaa ataagataac gattttttct
     2641 tcttcaaaag cggggacaag tggcccgatt tccataattt tacttatagt catagcaaat
     2701 tcctcctaaa attaatacat accgatactg aatacccatg cgataacaac agcaaggaca
     2761 ccagtaatca tccggctata aagaatagct ggaacgccga actgaaccgt ttttggctta
     2821 gcttctgcaa gagagagtcc tacggggata aagtcgcaac cagcttgagc attaattgca
     2881 aatagtgctg gtaaggcgta agtaactgga atagcaccaa tcgcaatttg agaaccaatc
     2941 agaacgccga ttacttgagc gataactgct ccaggaccga gaataggtga aagaaatggc
     3001 aaactacaaa taaaagcaat taataacatt ccccagagtg atccagctaa aggagagagc
     3061 gtattcgcaa ttaatttccc aatcccagtg taattaataa taccgataat catactaata
     3121 aaagccataa acggaataat atttttaata agcatatcca cagaatcacg ccctgcttga
     3181 tagaacacac ccattgcttt accaatgcca cgagaaaatt tcacaaggaa accttctttt
     3241 aattggcttg cttcttcttg atcttcttta atcttggcat aatcttcttt gaatttctct
     3301 ctgtcaaatg gtttcccagg ttcagtgctt ctgtctcgaa cttcaatatc ttcaggtttg
     3361 acgccagaaa caaaaatatc ttctgtaata tgttttgcga gcggacctga tggagaagaa
     3421 gggagcacat cgactgttgg aatacgtttc atcggataaa caccaattct cgcagtgcca
     3481 ccacaatcaa taacaacaca catcatttct tcttctggaa ttgaattttt aaaaccatcc
     3541 acggcttcag ctccagataa ttcggcaatt ttcagtgcta caggatgaat accaccacca
     3601 gtaatagaaa caacttttgt tctcggttcg ctcggagtaa tatctagtcc gactccccaa
     3661 ccgccttgac ctttattcac atgaattgat tgatacattt catttgcctc cttctatttc
     3721 agactttttc ttttcgcatt aagaatttcg taattgattc tgtaatcaca ccacgcatta
     3781 atataaccac gattccagct aggaagtaac gaactgcaag gcttgacata ctatatccag
     3841 cttcgaccac accattagca atgcctagat aaacgaataa ttcaccagca ttcgcatatg
     3901 gaaataatcc tgtaactggg tgcaaaaacg atacaacgga gtcataaaaa gctggtttct
     3961 gatgctcttt aacaaaacga ccaaatgtat aagccattgg atttgttagc atcagtacgg
     4021 ataaaacggg cattaaggta tagcgcaaaa tcatgttctt ggctgaaaat tggattgctc
     4081 ggttgactcg ctcctccccg ataaaggcga taatcgagta agtaaaggtt aaaaggacaa
     4141 ttaaaagagg gacaattcct gtcataaaac tcacaaactg tttgccgcca gcctcaaata
     4201 ggccgataaa gtttgttcca aaccattcaa tataattcac taggaaacac tcctttttag
     4261 ttatttaaag cgctttcatg caactgttga ctgttttaat aattgctttt tcttggattg
     4321 tattcttatt tttactacta agatccgtca atatttcgga taaatcttta tgatgatagt
     4381 tggtgaaagt cttgaacttt gcaaaaacag tctttccggt taaaatttgg cattcatgta
     4441 caactcggtt ttcattcact accagaatgg ctacagcact tgtgcgaaat ttgagtcgtt
     4501 ccatttcgga ataaagataa taaccagttt tcccagcata tttatccgca actttgttca
     4561 tatgatgctg ataatacctc acttggaaaa aagcaagacc tgtctgagcg atgaaaatga
     4621 gggaagcaat aaggacaata ttcatttact tttcctcctt agagggtggg aagacaaatc
     4681 acttcccacc aagttgaaat tatttattaa atgtttcatc ttgcagtttt ctaagtttcc
     4741 aaacagtagt ggattcatct aatgaaacgt cttcgtcagt aataaatgtg ccagctttga
     4801 tatttctgcg ggctactacc tcaccgctaa tcaagccgat aggaatatga ccattcgttg
     4861 ccatatcgac gtgagtttcc agtacaccgc gtacacagaa accgccaatg ccatctaatt
     4921 tttcaccggc agctatgtct tttttagcaa ccgcaaccgt ttcagaaact ggtgcgccca
     4981 ttggaacaat agcgtgatcg tggttcaaca cagcttttgc aatggttaga ggtgtttcaa
     5041 ggctagctag atgataagga cgataaagaa tgtgatgatc ccggtcgcct tttttcatga
     5101 ggtagctaag ttcgtgacta acgccttcgt tttgcccttt gacgataacg aatacgccag
     5161 gagccaaacc gtctacatat tctacaacgc caaatttgtt taaaatacca ccttggtctt
     5221 ttaagtctag atctttgatg accgaatcaa cgtcacctga aataccatgc attccaacaa
     5281 cgtctgggac ataaccgata gcattagaaa gtaaattcat ttctgccatt gtttttgttc
     5341 catcttggaa agcagctagc atgtgagacg ccatattttt cccatcggct tccgcttgac
     5401 agctatcagg gttagcgctg attttaagtt tattattttt ccctttacca gcgacaagga
     5461 cttccatacc catagatttg gaaaattcgt aaagttcagt tatcgcagcc ggttcgtcgc
     5521 catcagagcc agtatatacg agaccagcgc tgtcatatag ttttttcatt agtggtccga
     5581 tagtaatatc aatttctaca ttaagtaaaa cgagttgttt tttagcaagt aaagtttcta
     5641 gggaaatttt tgcgccgact tctggaacac cagtagcatc aacaatcact tctacaagat
     5701 cagaatgaat aatttcttta aagtcattag ataatagaat tttttctttt ttggttgctg
     5761 tggcattgta agcatctgcg gctttttgtg ctgcttctac atgaatatcg ctaataccaa
     5821 cgatactcat acctggaata gcggcgattt gcgaaatcat accgaatccc atttgaccag
     5881 cgccgataac accaacgcga atcggattat tttcgttctc acgagcaagt aactgtctat
     5941 ataaagtcat ttcaagttcc tcctagtaat cgttttcatt tattaaaata aaactccgga
     6001 taaagctatt ttatcctaac aaatgaattt tgtaacattt
//
LOCUS       DASDXX010000158         6038 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.158, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000158 DASDXX010000000
VERSION     DASDXX010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6038
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.158"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            3..695
                     /locus_tag="U0280_002300"
     CDS             3..695
                     /locus_tag="U0280_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009927821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272225.1"
                     /translation="MFLVGCGNEKNDIQVTNTNDKSNFKEKEEAQMKLTETEITPNDK
                     GDFSIMGVVDEGASVYIESEEAEVNSSGMFVASSNYTGSEEIQYTVTAKEAGKTDNVQ
                     IVTILPPTLKEYSVGDTQEIGGIKVTLTSVEKTNERNQFDDTKPKNVVKISYKVENNS
                     GSEYFVDSDIDVYDSKGTMGERYPLDNTTGKIPNGKNMNADFHAGVNESGNIEIIFNL
                     FSDANLTFHAKI"
     gene            761..1963
                     /locus_tag="U0280_002301"
     CDS             761..1963
                     /locus_tag="U0280_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2272226.1"
                     /translation="MVKKVKGRRYEGSIEQRSKNSWRMRVTVGYDYKGTPIRADRTTR
                     TKNERERERELRNFITELEQNGYTAPARMTFKAFVENEYMPKHAQNNLEVKTWTEYYK
                     SIVARAYPAFGGVQMDKITTLHIVNLVAKLQKPGARLDVKPTDSDEKKNKPLSPRSIR
                     NIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYTPAEIELLNAALVKEPLR
                     LQVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVAKAGEGLLLKESTKNDVA
                     GIVSIPAWLTNLIETYISNEVLDLKTEGKWTNHKFLFANMEGKPIRPDSIYQRWKRFL
                     ERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHVLKDTHKDA
                     ASDFENPF"
     gene            complement(2070..2142)
                     /locus_tag="U0280_002302"
     tRNA            complement(2070..2142)
                     /locus_tag="U0280_002302"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2107..2109),aa:Lys,seq:ctt)
     gene            complement(2230..3186)
                     /locus_tag="U0280_002303"
     CDS             complement(2230..3186)
                     /locus_tag="U0280_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HEM2272227.1"
                     /translation="MTASVFVAGKLLPETMEALSEWDVKAFSGEENITEAELIKNVTE
                     VDAIICPLSSPISAKVLESAKNLKIVANIGAGFDNIDVKKAQELGIAVTNTPDVSTEA
                     TAELTLGLILDVARRISEGDRLCRETPEQFKGWAPTFFLGTELSGKTLGIIGLGRIGQ
                     AVAKRAAAFGMKIIYSGHHPKEAAKEWNAEFVSQEELLKRSDVVTIHAAYSPSLKYLL
                     NETTLKTMKSSAFLINAARGPVVEEAALIKALEAGVIAGAALDVFEFEPKIGEDLAKL
                     DNVVLTPHIGNATVETRTAMGKIAIANVEAVLAGKAPLHSVY"
     gene            3317..3955
                     /locus_tag="U0280_002304"
     CDS             3317..3955
                     /locus_tag="U0280_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEM2272228.1"
                     /translation="MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEI
                     FEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIG
                     VNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDL
                     NKAQFLNCALNGVDLSSCIFESITAMPQDLKGVSIDFSHAPALMPLFGIRVK"
     gene            complement(3977..5029)
                     /locus_tag="U0280_002305"
     CDS             complement(3977..5029)
                     /locus_tag="U0280_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transcriptional activator/DNA
                     repair protein Ada"
                     /protein_id="HEM2272229.1"
                     /translation="MITNQRDIDKYYDMLVEKNSNYEGVFFVGVKTTGILCRPTCPAK
                     KPLKENCEFFSTAKEALLASYRPCKRCEPLSNPTKLSPAVKLLVDAIEKNPEKKWTDK
                     DFDELSISANTARRQFKKQFGMTFIEYARSRRLGLAFKHIRGGNSIINAQIESGYESG
                     NGFRDAFSKTMGEVPHKSNDITILYSAWLETKLGSMLAISDDDSLLLLEFVDRKGLET
                     EIKKLRVRLNAAITPEKTIIIQQIEAELAQYFNGALIDFKTPIRYIGSDFQQSVWNEL
                     RRIPIGETISYKSLAEKLGRPTASRAVARANGANQLSLIVPCHRVINTNGALGGYGGG
                     LARKEWLIKHEKMVPR"
     gene            complement(5026..5799)
                     /locus_tag="U0280_002306"
     CDS             complement(5026..5799)
                     /locus_tag="U0280_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HEM2272230.1"
                     /translation="MTKNFKKLKSLHELPTPLILYNCWDVASARAIQQGGAPVIATSS
                     YAIAESLGAVDGEHLTFDEMFLVISRIAKNVSLPLTVDIETGYARNLEELAQNVERLL
                     AIGVCGVNLEDQLIGVTNPGLCSTEEQCDKIETIKETAAKMSTEIFINARTDVFFQGR
                     DETVDLLEEAIDRAKAYKEAGADAIFIPGLLLPKLIRAFVEKSPLPVNVMRMDGMLSN
                     EDLQKIGVKRISYGPFSFFQANLAIQLEVERIFEGGKAL"
BASE COUNT         1805 a         1239 c         1169 g         1825 t
ORIGIN      
        1 gtattttttt agtaggttgt ggaaatgaaa aaaatgatat acaagttaca aataccaatg
       61 ataaaagtaa tttcaaagaa aaagaagaag ctcaaatgaa gttaacagaa acagaaatta
      121 caccaaatga taaaggcgac tttagcataa tgggcgttgt cgatgaaggt gcatctgttt
      181 atattgagtc agaagaagca gaagttaatt catcggggat gttcgttgct tctagcaact
      241 acaccggctc ggaagaaatt caatatactg ttacagctaa agaagctgga aaaactgata
      301 atgtacaaat tgtaactata cttccaccca ctctgaaaga atacagcgtt ggtgatacac
      361 aagaaatcgg cgggataaaa gtaactttaa ctagtgttga gaaaacgaac gaaagaaatc
      421 aatttgatga taccaagcct aagaatgtag ttaaaataag ttataaagtt gaaaataatt
      481 ctggctctga gtactttgtc gattctgaca ttgatgtata cgattctaaa ggtacaatgg
      541 gcgaaagata cccattggat aacacaaccg ggaaaatacc aaacggaaaa aatatgaacg
      601 cagacttcca tgcgggagtt aatgaaagtg gaaatattga aataatcttc aacttatttt
      661 ctgatgcaaa tttaacgttc catgcaaaaa tttaaaagag agcctctggg cttttctttt
      721 taccgaaaaa agaacgtatg tgcgaaagga ggacttattt atggtaaaaa aagtaaaagg
      781 taggcgttat gagggttcta ttgaacaacg tagcaaaaat tcatggcgta tgcgcgtgac
      841 tgtaggctat gactacaaag gtacgccgat tcgggctgac agaacgacgc gaacaaaaaa
      901 tgagagggag cgagaaagag agttaagaaa tttcatcaca gaattagagc aaaatggata
      961 tacagctcct gcaagaatga catttaaagc atttgttgag aatgagtata tgccaaaaca
     1021 tgcacaaaat aacctagaag ttaaaacctg gacagaatac tacaaatcta tagtagcaag
     1081 agcttaccca gcctttggcg gcgttcaaat ggataaaata actacacttc atatagttaa
     1141 tttagtcgca aaattacaaa agcccggcgc aagattagat gttaaaccta cagattcaga
     1201 cgaaaagaaa aataagccac tttcgccacg atctatcaga aatatttatt ttgcgataaa
     1261 ttcagtattt gaaactgcgg ttgagtggaa agtaatccca attaaccccg cagagggtgt
     1321 aaggcttcca aaaacaacta aaagaccgcc tactatttat actcctgctg aaattgaatt
     1381 gttaaatgca gctctagtga aagagccact tagattgcaa gtaatgattt atatagcgct
     1441 gatttcaggt tgtagagaag ctgaattagc agcattagaa gtaaaacacg tgaacttaat
     1501 agaagatgag ctaacattcg aacaaacgct agttgcaaaa gcaggagaag gtttacttct
     1561 taaagaatca actaagaatg atgtagctgg gatagtttct atacccgctt ggttaactaa
     1621 tttaatagaa acatatataa gcaatgaagt tttagaccta aaaactgaag ggaaatggac
     1681 caatcacaaa tttttattcg ccaacatgga aggcaaaccg attaggcctg attcgattta
     1741 tcagcgttgg aaacgatttt tagaaagaca caacttgccg gtgattcgtt ttcatgattt
     1801 gcgtcacaca tctgctacac ttttattgaa caaaggtaga gatataaaaa ttatccaaga
     1861 gcggcttaga cataaatcta gtgtgaccac ttcaaacatt tatgcacatg ttttgaaaga
     1921 tacgcacaaa gatgcagcta gcgattttga gaaccctttt taagctttct gccccacctc
     1981 tgccccactt aataaaaaaa ggcaatttta aactaaaatt tcacaaacaa aaaaccgctt
     2041 aaacgctttg tttaggcggt ttttatatat gggttgtgag ggtttcgaac ccccgacccg
     2101 ctgattaaga gtcagctgct ctaccaactg agctaacaac ccgttgtcgt attccgacaa
     2161 aaaatattat accataattc agcgataaaa cacagccgca gccactcgct gcggctatat
     2221 ttttcggtat taataaacag aatgtagtgg tgcttttcct gctaagacag cttcaacatt
     2281 tgcaatggct attttgccca ttgctgtgcg tgtttccaca gttgcgtttc cgatatgggg
     2341 tgttaatacg acattatcca gtttagccaa atcctcgcca atcttaggct cgaactcaaa
     2401 cacatccagc gcagcgccgg cgataacgcc tgcttctaat gccttaatca gtgcagcttc
     2461 ctctacaaca ggaccgcgag cagcattgat caaaaaggca cttgatttca tcgttttcag
     2521 tgttgtttcg ttcaacagat acttcaagct gggactgtat gccgcatgga ttgttacaac
     2581 atcgctgcgc ttcaataatt cttcctgact cacaaactct gcattccact ctttcgctgc
     2641 ttctttcgga tggtgcccag aataaataat tttcattcca aaagcagccg cacgttttgc
     2701 aacagcttgt ccgattcttc ctaatccaat aattccgagc gttttgccac ttaattcagt
     2761 acctaaaaag aacgttggtg cccagccttt gaattgctcg ggtgtttcgc ggcataatcg
     2821 gtcgccttct gaaattctcc gtgctacgtc caaaatcaat ccaagcgtta gttccgccgt
     2881 tgcttccgtt gacacatctg gcgtattggt cactgcaatg cccaattctt gcgctttttt
     2941 tacatcgata ttgtcaaaac cggcaccaat attcgccacg attttaagat tttttgccga
     3001 ttccaatact tttgccgaaa ttggggaaga aagcgggcaa ataatcgcat ccacttccgt
     3061 tacatttttt attaactctg cttctgtaat attttcctca cctgaaaaag ctttaacgtc
     3121 ccattcacta agagcttcca tcgtttctgg tagtaatttt cctgccacaa atacgctcgc
     3181 tgtcatcacg ttcactcctc aactgccatt tttattctac attcattgta atccgttttt
     3241 tatgaaaggt aaacgatttt ccgctccttt tcctagcaaa atacggtata atgaaagcgg
     3301 aagtgaggtc gatataatga aaaaaattac tgcgccgcgg attcctgatg gggatttgac
     3361 ggtttatccg aatgatacat attttattga agatattgga gaagttagtg agcaaatctt
     3421 tagaaaaaca acgctaactg gggaaatttt cgagcatttt catttagaaa cgattatttt
     3481 tgatggttgt gtttttgatt cggtttctct tgtaagtgcg aatttgactg atgttgtatt
     3541 taaaaattgc gatttatcga atttagattt aatgggcgca attattcacc gagttcgttt
     3601 tgaaaattgt aaattaattg gcgtgaattt tagtgatgct acgcttagaa attgcgtttt
     3661 cgttgattgt tatgcggatt atgttgcctt tcgttatgct aacttgaaat gggtggcgtt
     3721 tgaggcgggc gcgtatacga atagtgattt tagcggggct caactggtcg atacctattt
     3781 ggaacggctt gatttgaata aagcgcagtt tttaaattgc gcgctaaatg gtgttgatct
     3841 tagctcatgt atttttgagt ctatcactgc aatgccgcaa gatttgaagg gcgtgagcat
     3901 tgatttttcg catgctcctg ctttgatgcc gttgtttggg atacgggtta aataattgaa
     3961 aaaagatggt tccgcgttac cttggaacca tcttttcatg tttaattagc cattctttgc
     4021 gcgcaagacc gccaccgtag cctcctaatg ctccgttagt attgattaca cgatggcacg
     4081 ggacgatgag ggataattgg ttagccccat ttgctcttgc cacagctcga cttgctgttg
     4141 gccgccctag tttttctgcc aaacttttgt acgaaattgt ttcgcctatc ggaattcgtc
     4201 gcagttcatt ccagacactc tgttgaaaat ctgacccgat atagcgaatc ggtgttttaa
     4261 aatcaatcaa tgctccatta aaatattgcg ctaattcggc ttctatttgt tgaattatta
     4321 ttgttttttc aggtgtaata gccgcgttta agcgcactcg taatttttta atttctgttt
     4381 ccaatccttt tcgatcaaca aattccagaa gcaatagact atcatcatca gaaattgcga
     4441 gcattgatcc aagtttagtt tcaagccaag cggaatacaa aatggtgata tcgtttgatt
     4501 tatgaggaac ctcccccatc gtttttgaaa aagcatctcg gaacccattt ccagactcat
     4561 aaccactttc aatttgtgca ttaatgatcg aatttccacc ccgaatatgc ttaaaagcaa
     4621 gaccgagacg ccgcgaacgc gcatactcaa taaaagtcat cccaaactgc ttcttaaact
     4681 ggcgccgcgc tgtatttgcg ctaatggata attcatcaaa atctttatcc gtccattttt
     4741 tctctggatt tttctcaatt gcatcaacaa gcaacttcac agctggcgac aatttcgtcg
     4801 gattggagag tggttcacaa cgcttgcaag gccggtaaga tgcaagtagc gcctccttgg
     4861 ctgtactgaa aaactcacaa ttctctttta aaggtttctt cgccggacac gttgggcgac
     4921 aaagtattcc cgtcgttttc actccaacaa aaaatacgcc ttcataattc gaatttttct
     4981 ccactaacat atcataatat ttatcaatat cccgctgatt cgttatcaca aggctttccc
     5041 tccttcgaaa atccgctcaa cttccagctg aatcgctaaa ttagcctgaa aaaaactaaa
     5101 cggcccataa ctaattcttt tcacaccgat tttttgtaag tcctcgtttg agagcatccc
     5161 atccatcctc atgacgttga ccggaagcgg tgatttctcc acaaatgcgc gaattaattt
     5221 tggtaatagc agacccggaa taaaaatagc atctgcccca gcctccttgt atgcctttgc
     5281 cctgtcaatc gcttcttcca acaagtctac cgtctcatcc cgcccttgga aaaagacatc
     5341 tgtacgcgca ttgataaaaa tttccgtgct cattttcgcc gccgtttctt tgattgtctc
     5401 gattttatca cattgctcct cagtactgca taaccccgga tttgtaacgc caataagctg
     5461 atcttccaag ttcacaccac aaacaccaat cgctagcaac cgctccacat tctgagccag
     5521 ttcctctaaa tttctagcat acccagtctc tatatccacc gttagcggca aactcacatt
     5581 cttggcaatg cgcgaaataa ctaaaaacat ttcgtcaaaa gttaaatgct ccccatccac
     5641 agcgccgagt gactctgcaa ttgcataact gcttgtcgct attactggtg ctccgccttg
     5701 ttggattgct ctggcagaag cgacgtccca gcagttgtag aggattagtg gggtgggtag
     5761 ttcgtgtagg gattttagtt ttttaaagtt ttttgtcatt ggtttcaact ccatttgtta
     5821 ggatggagtt agtatagcag gtggggagat tggaggtacc aggaaaatta acatggatgt
     5881 tttttggtag atgtatgtag aactgtaaac tcttgcatac gctaagtagc ctaaaattct
     5941 cttcctcatc ttaagctact tgttcccgta tatagttaat ttcattctct ctttgaaatt
     6001 tgttgtagaa ttttgtcact tgtcttttta ttggtttt
//
LOCUS       DASDXX010000159         6025 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.159, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000159 DASDXX010000000
VERSION     DASDXX010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6025
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.159"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            142..1137
                     /gene="trpS"
                     /locus_tag="U0280_002307"
     CDS             142..1137
                     /gene="trpS"
                     /locus_tag="U0280_002307"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEM2272231.1"
                     /translation="MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEH
                     AITVPQDRLKLREQTRSLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGE
                     LERMTQFKDKSDGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAE
                     RFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKI
                     KSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETISTIEEKYVGKGYGDFKTDLAEL
                     VVAELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRR"
     gene            complement(1193..1609)
                     /locus_tag="U0280_002308"
     CDS             complement(1193..1609)
                     /locus_tag="U0280_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HEM2272232.1"
                     /translation="MKKLYETTVINTGGRSGEVHSPDNVFYFDISAPTELGGDGGGGT
                     NPEQLFAAGYGACFNSALELVLGKAGIEAKSTVTATVSLYSDPEDNGFKIGVVLEGTI
                     EGQDKEKTEALLKKAHEVCPYSKATRGNIDVEIKVG"
     gene            complement(1593..2045)
                     /locus_tag="U0280_002309"
     CDS             complement(1593..2045)
                     /locus_tag="U0280_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2272233.1"
                     /translation="MDTNTRILEEQLCFSVYNASKQFTKLYREALEPFQLTYPQYIAL
                     LVLWEVEEQTVSELGKRLALDSGTLTPMLKRMEHLGYVTRSRHPEDERRVYIRLTEKA
                     IKIQPDVLKSVDNCLQLLDFKELDYTQLLTKIQSLTKQLGGIENEKII"
     gene            complement(2167..3408)
                     /gene="fabF"
                     /locus_tag="U0280_002310"
     CDS             complement(2167..3408)
                     /gene="fabF"
                     /locus_tag="U0280_002310"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEM2272234.1"
                     /translation="MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPD
                     DFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVG
                     VWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTT
                     VTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETA
                     CRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNG
                     EGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGDHAKKLAISST
                     KSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVV
                     ISNSFGFGGHNATLVFKRIED"
     gene            complement(3611..4549)
                     /gene="fabH"
                     /locus_tag="U0280_002311"
     CDS             complement(3611..4549)
                     /gene="fabH"
                     /locus_tag="U0280_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase III FabH"
                     /protein_id="HEM2272235.1"
                     /translation="MNAGILGVGKYVPEKIVTNFDLEKIMDTSDEWIRTRTGIEERRI
                     ARDDEYTHDLAYEAAKVAIKNAGLTPDDIDLFIVATVTQEATFPSVANIIQDRLGAKN
                     AAGMDVEAACAGFTFGVVTAAQFIKTGAYKNIVVVGADKLSKITNWDDRTTAVLFGDG
                     AGAVVMGPVSDDHGLLSFDLGSDGSGGKYLNLDENKKIYMNGREVFRFAVRQMGEASL
                     RVLERAGLEKEDLDLLIPHQANIRIMEASRERLNLPEEKLMKTVHKYGNTSSSSIALA
                     LVDAVEEGRIKDNDNVLLVGFGGGLTWGALIIRWGK"
     gene            complement(4669..5796)
                     /locus_tag="U0280_002312"
     CDS             complement(4669..5796)
                     /locus_tag="U0280_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2272236.1"
                     /translation="MDRKCQLIMKKKFTQILLASVIVSSTLVPFVQAEAAGTSQTSVS
                     HAGMTLSQQQFIQSIANDAQDLQKEEKILTSVTLAQAILESNWGKSGLSTSANNLFGI
                     KGSYEGNSVSMGTQEFSSGKAYRTQADFRKYPDKKASLVDHAQLFVNGVSGNANLYSA
                     VIGETNYKEAAYAIQDAGYATDPAYAEKLISTIENYNLDQYDQIYDTVTSTENQLAYA
                     EIKDSSNETIWTKPYNTEGAEKIGSVKDYKNKSLRISQKAVTEKGTWYQLLNQGETIG
                     WVNSNAVEVFYTPKNETNVKLDKYITDSDQKIYAYPVEDNSKVVKNLNDYLGKELDID
                     RRADVKNEYWYRIKSDDGKVIGWSKADGFAENNPNKALEVK"
BASE COUNT         1746 a         1215 c         1014 g         2050 t
ORIGIN      
        1 ttatatagaa attttctatt gctaagagcc tttttaggta cttagggtgg caccgcggat
       61 aaccgttcgt ccctaacatt tatatgttgg gatggacggt tttttatttt cgctatcagt
      121 gaaaaaattg gaggaataaa catgaaaaaa gtaatatttt ccggaattca acctagtgga
      181 caattaactt taggaaatta tattggagct ttgaaacagt ttggtcagtt tcaagatgaa
      241 tatgaatgtt tttattgtat cgttgacgaa cacgctatta cggttccaca agatagatta
      301 aagcttcgtg agcaaacaag aagtttagca gctctttatt tagcagttgg actggatcct
      361 gaaaaagcga ctctttttat tcaatctgaa gttgcagcac atgctcaagc agcatggatt
      421 ttacaatgta acgtatatat tggcgaatta gaacgtatga cgcagttcaa agataaatca
      481 gatgggaaag caggtgtcag tgctggcctt ttaacttacc caccattgat ggcagctgat
      541 attttacttt atcaaaccga tttagttcct gttggcgagg atcagaagca acatatcgaa
      601 ttaactcgcg acttagcaga acgatttaat aaaaagcacg cagatatttt cacgatgcca
      661 gaagtattca ttcctaaaca aggcgcacga gtaatgtcct tacaagatcc aacgaaaaaa
      721 atgagtaaat ctgatgccaa tttgaaaaat gctatctttt tacttgaccc accagctacc
      781 attagaaaaa aaatcaaaag cgctgtaacc gattctagtg gtattattga atataataaa
      841 gaagaaaaac caggtgtgtc taacttacta actatctatt ctgttatcac tggcgaaaca
      901 atttctacta tagaagaaaa atatgttgga aaaggttatg gcgattttaa aacagattta
      961 gctgaattag ttgttgctga acttgagcca attcaagaaa ggtactatgc ttatctaaaa
     1021 tctgaggagc tggacactat attagacgca ggagcagaaa aagctgctcg cgtggctaat
     1081 aaaacattga agaaaatgga aaatggcgtg gggcttggcc gcaaacgcag aagataatat
     1141 aaaaaagcca atgactagtt gatctaagtc attggctttt tttatttaaa cattaaccta
     1201 ctttaatttc cacatcgatg ttaccacgag ttgctttaga atatggacaa acttcatgtg
     1261 cttttttaag tagtgcttct gttttttctt tatcttgtcc ttcgatagtt ccttctaata
     1321 cgacaccaat tttaaaaccg ttgtcttctg gatcactata taagctgaca gttgctgtta
     1381 ctgtgctctt tgcttcaatc ccagcttttc ctagaactaa ttctaacgcg ctattgaaac
     1441 aagctccgta tccagccgca aatagttgtt ctgggtttgt tccaccaccg ccgtctccac
     1501 caagttctgt tggcgcagaa atatcaaagt aaaatacgtt gtctggcgaa tgaacttcac
     1561 cacttcttcc acctgtatta atgactgttg tttcatataa ttttttcatt ttctattcct
     1621 cctaattgtt tcgttaacga ttgtattttg gtaagtaatt gtgtgtagtc taattctttg
     1681 aaatcaagta attgaaggca gttgtccacg ctttttaata cgtcaggttg tatttttatt
     1741 gctttttctg ttaagcgaat ataaacgcgg cgctcgtctt ccggatgacg actccgtgta
     1801 acatatccta aatgctccat tcgttttaac ataggtgtta aagttccact atctaaagcc
     1861 aacctcttcc caagttctga tacagtttgt tcttcaactt cccatagaac aagcaaagca
     1921 atatattgtg gataggttaa ttgaaacggc tctaaagctt cacgataaag tttagtaaat
     1981 tgtttggatg cattataaac agaaaaacat agttgctctt ctaatatgcg tgtattcgtg
     2041 tccaacatgt tctcctcctt ttaagttgtg tacaatttaa ttgtaaccaa tcataataat
     2101 gaaagctagt tttttgctca aaaaaagcct tacctcattt ttagaggtaa ggcttttgat
     2161 tatattttag tcttctattc ttttaaatac taaagtcgca ttgtgaccac caaagccaaa
     2221 agagttagaa attactacat ttacatttgc ctcacgtgct tcatttggaa cataatccaa
     2281 gtcacaaact tcatcttggt ttttcaaatg aatcgttggt gcaataatat tatcacgaat
     2341 agtcaatagg gcgaaaatag cttctattcc gccagacgca cctagagtat gtccagtcat
     2401 tgacttagta gaactaatcg ctaatttttt cgcatgatct ccaaagacag ttttaatagc
     2461 ttgtgtttcg tattcatcat tgtacggtgt acttgttccg tgggcattaa tataatctac
     2521 tttatcaggg gtaaggccag catcatcaat cgccattttc attgcgcgcg cagcaccttc
     2581 accgtttgga gctggagcag taatgtggta agcatctcct gttgcaccgt aaccaacgat
     2641 ttcagcgtaa atttttgccc cacgtgcttt tgcatgttcg tattcttcta aaataacgat
     2701 acctgcgcct tcaccaataa taaaaccatc acgatcttta tcaaacggac ggcatgcagt
     2761 ttctggatct ggatttaatg acaaagcttt attagcagta aaaccagcaa gtgacatttt
     2821 agtaatcggc gcttctgctc caccagtaat cattgcatca gcgtctccac gctcaataac
     2881 tttaaacgcg tcgccgattg agtttgttgc agttgcacaa gctgtaactg ttgtagaatt
     2941 aatgccttta gcaccaaaac gaatagaaac ctggcctgaa cccatatctg gaatcatcat
     3001 aggtacgaaa aacgggctaa ctcggcgatg accgcgattt aagaaaattt catattgtgt
     3061 ttcgaaagtt tccattccac caattcctga accaatccaa acaccaactc ggtttgcatt
     3121 ggaatcatca ataactaaac cagagtcttg cacggccatt tcagcacttg caattgcata
     3181 atgcgtaaaa cggtccattt tacgagcttc ttttttttct agatattttt ctacatcaaa
     3241 atcttttaat tctgctgcaa ttttaaccgg aaagtcatcc ggattaagtc ttgtcatttt
     3301 tgcaacacca ttaacacctt tttttgcgtt ttcccaagaa gtttccgcat catttccaat
     3361 aggtgtaaca gctccaatac cagtaacaac tactcttctc ttatccattt actcatctcc
     3421 ttattttgcg attcataaaa aacaacttct gtccaatgac agcagctagt ataaagttaa
     3481 ggctttattt aaaattaata atagtgcaca aacaaataaa ccaaaagcct gttccattat
     3541 aacataaata aaggaaagtt gtcctaacta aaataatcgt tagggcaact ttccttttta
     3601 aatttactgc ttacttaccc caacgaatga ttagggcgcc ccatgttagt ccgccgccaa
     3661 aacctacgag cagaacgtta tcattatctt taatacgtcc ttcttccact gcatcaacga
     3721 gcgcaagtgc gattgaagag gacgaagtat taccatattt gtgtactgtt ttcatcagtt
     3781 tttcttctgg taaattcaaa cgctcacgag aagcttccat aatacgaata tttgcttggt
     3841 gaggaattag taagtccaag tcttctttct caagaccagc acgttcaagt actcgtagtg
     3901 aagcttctcc catttggcga actgcaaagc ggaatacttc acgaccgttc atataaatct
     3961 ttttattttc atctaaattc aagtatttac cacctgatcc atctgaacct aagtcaaatg
     4021 aaagtaaacc atgatcatca gaaactggtc ccataactac agcacctgct ccatcaccga
     4081 ataatactgc tgttgtgcga tcatcccagt tagtgatttt agataattta tccgcaccga
     4141 caaccacgat atttttatat gcacctgttt taatgaattg tgctgcagtc actactccaa
     4201 aagtgaaacc agcacaagct gcctcaacgt ccataccagc agcgtttttt gctcctaagc
     4261 ggtcttggat aatattagca actgaaggaa atgtcgcttc ttgtgtaaca gttgcaacga
     4321 taaacaagtc aatatcatct ggtgtaagac cagcattctt aatggctacc tttgctgctt
     4381 catatgctaa atcatgcgta tattcgtcat cacgagcaat tcttctttcc tcaataccag
     4441 ttcgagttct aatccactca tcagatgtat ccataatttt ttctaaatca aagttagtta
     4501 ctattttttc aggtacgtat ttacctactc ctaaaattcc tgcgttcatg tgttctcctc
     4561 catatcaaac tacatcaggg tgaaaataaa ttttctcctg gttattttta tgacctggtg
     4621 ctaattttaa cagagaacta tcaattaagc aattggattg ctactttttt attttacttc
     4681 taacgcttta ttaggattgt tttcagcaaa accgtctgct tttgaccagc cgattacttt
     4741 cccatcgtct gacttaatac ggtaccaata ttcatttttc acatctgcac gacggtcaat
     4801 atctaattct ttccctagat aatcattaag atttttgact acttttgaat tatcttctac
     4861 tgggtaagca tagatttttt gatccgaatc ggtgatatat ttatctagtt tcacatttgt
     4921 ttcatttttc ggggtataaa aaacttctac agcattactg tttacccatc caatagtttc
     4981 gccttgattt agaagctgat accatgttcc tttttctgtg acagcttttt gagaaattcg
     5041 aaggctttta tttttgtaat ctttgacgct acctattttt tctgcgccct ctgtattata
     5101 tggttttgtc caaattgttt cattgctaga atctttaatt tccgcatatg ctaattggtt
     5161 ttctgttgat gtcactgtat cgtaaatttg gtcatattga tccaaattgt aattttcaat
     5221 agttgaaatg agtttttctg cgtatgctgg gtcagttgca taacctgcat cttgaattgc
     5281 gtatgctgct tccttatagt ttgtttctcc gatgaccgct gagtaaagat ttgcattacc
     5341 agatactccg ttaacaaaaa gttgggcatg atcgactaaa gatgcttttt tgtctggata
     5401 ctttctgaaa tcagcttgtg tgcggtaggc tttcccgctg ctaaattctt gcgttcccat
     5461 tgaaacggaa tttccttcat agcttccttt aattccaaac aggttgttag ctgaagttga
     5521 taagccactt ttaccccaat tggattctag aatagcttgt gctaaagtga cactcgtcaa
     5581 tattttttct tctttttgta gatcttgtgc atcatttgct atggattgta taaattgttg
     5641 ttgtgataaa gtcattcctg cgtgacttac tgaagtttgg ctcgttcctg ctgcctccgc
     5701 ttgaacaaaa ggtactagtg tagaacttac gatgacgctt gctagtaaaa tctgcgtgaa
     5761 tttctttttc attatcagtt ggcacttcct atccaaatta gttagttccc ccaatttaaa
     5821 tggctctgtc tctgttaacc ttcttcattc tagcattttc attctgagag cctactaatt
     5881 ttttgatgaa aaatttatca taaagtaagc aaaatggcta ttttagaggg ttcacacata
     5941 cctatttaca tttgacaata ttatgtcgtt acacatttac cccttaatac tactattctt
     6001 cgttgaagtt tcatttcctt ccttt
//
LOCUS       DASDXX010000160         5982 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.160, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000160 DASDXX010000000
VERSION     DASDXX010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.160"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..799)
                     /locus_tag="U0280_002313"
     CDS             complement(<1..799)
                     /locus_tag="U0280_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1963 domain-containing protein"
                     /protein_id="HEM2272237.1"
                     /translation="MEQLFDILPSEWAERFLETEKERIELHFKDVGKLSLLQSKAGGR
                     GYLPREQGYPVTEEGKPLSLLTQINFSEMPQMENYPEFGLLAFYVDYQDDLYGLNFEN
                     PTSQEGFRVFFFDDLGSESLTAEEQDAFFEDVAKSDFYPVVNGEFKIAGQVSDQILLQ
                     DSFDFENEFGSNFYELADQIFAEDEDKSEALYQLGKECSQIGGYPFFTQEDPRMYTEN
                     PHHDTLLFQLASEDFDESRMAIMWGDCGVGNFFINKQDLINRDFSNIM"
     gene            complement(884..2095)
                     /locus_tag="U0280_002314"
     CDS             complement(884..2095)
                     /locus_tag="U0280_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2272238.1"
                     /translation="MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETT
                     WLHEAAAGTIEPEKLMYPLDKVVNNTKTTFIQDTVVKINKDEKTVTLDANGDISYDYL
                     LIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGG
                     AGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLE
                     DRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIEASGFEAGR
                     GRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVK
                     GETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGV
                     LASKGKFKFYK"
     gene            2545..3540
                     /locus_tag="U0280_002315"
     CDS             2545..3540
                     /locus_tag="U0280_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2272239.1"
                     /translation="MDEKTKIYDITIIGGGPVGLFAAFYAGMRNASVKIIESLPQLGG
                     QLSTLYPEKYIYDIPGYPAVRAQELVNNLIQQMKPFDPTIALEEAVQSVEKQVDGTFE
                     IITKKDTHYSKAVIITAGNGAFEPRRLDLPEAEQYEGKNIHYFINDLSRFSGRRVAVC
                     GGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNNLEKSSIAIKTPFIPTEVLGN
                     GDKLTHITLQEVKGDTRETLEIDDFIINYGFVSSLGPIKNWGLELERNSIVVNSKMET
                     SIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE"
     gene            3628..4257
                     /locus_tag="U0280_002316"
     CDS             3628..4257
                     /locus_tag="U0280_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2272240.1"
                     /translation="MNVLVIGANGKIGRLLVEKLAMEKGFFVRAMVRKAEQVSELEKL
                     GAKPIIADLKKDFHYAYDEIEAVIFTAGSGGHTPASETINIDQNGAIKAIETAKEKGV
                     RRFIIVSSYGADNPENGPESLIHYLKAKQAADEELKRSGLDYTIVRPVGLSDDPATGK
                     IAEVSEKPTTTIPRADVADFISEALSEKSSFYKTYTIESGDTPIKHFFD"
     gene            complement(4303..4536)
                     /locus_tag="U0280_002317"
     CDS             complement(4303..4536)
                     /locus_tag="U0280_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzB family protein"
                     /protein_id="HEM2272241.1"
                     /translation="MNPIVEFCVNNLASGADAAFAKLDADDSLDVIEYDCLTYCDLCA
                     TSLFALVDGEVVRGETAEELVANIYTFLEENPF"
     gene            complement(4558..4884)
                     /locus_tag="U0280_002318"
     CDS             complement(4558..4884)
                     /locus_tag="U0280_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzD family protein"
                     /protein_id="HEM2272242.1"
                     /translation="MVNEAKLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP
                     FVVEYVDIFNPPNEKALADMANKIVEEDYMYPVIVVDGEIIAEGNPRLKDIYQVMTDR
                     GYLATM"
     gene            complement(5125..5307)
                     /locus_tag="U0280_002319"
     CDS             complement(5125..5307)
                     /locus_tag="U0280_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272243.1"
                     /translation="MCGGRILREGLHARFTRMHIWPVTRFASNGPNKNTFLRLRKERA
                     LSTGKVERQLGCAPNC"
BASE COUNT         1850 a         1328 c          996 g         1808 t
ORIGIN      
        1 acataatgtt agaaaaatca cgattgatta aatcttgctt gttgatgaaa aagttaccga
       61 caccgcagtc cccccacata attgccattc tactctcatc aaaatcctca gatgctaatt
      121 gaaacaaaag cgtgtcatga tgcgggtttt ctgtatacat acgcggatct tcttgtgtaa
      181 aaaaaggata tccgccaatt tgactacatt ctttacccag ttgatataat gcttcagatt
      241 tatcttcatc ctccgcgaaa atttggtcag ccagctcata aaaattactt ccaaattcat
      301 tttcaaaatc aaagctatct tgtaatagaa tctgatctga aacttgccca gctattttaa
      361 actcaccatt aacaacgggg taaaagtccg actttgctac atcttcaaaa aatgcatctt
      421 gttcttcagc agttaagctc tcacttccca agtcatcaaa gaaaaacact cgaaaacctt
      481 cttggctcgt tggattttca aaattaagtc cgtacaaatc atcttgataa tccacataaa
      541 aagcgagtaa gccaaattcc ggataatttt ccatttgtgg catttctgaa aaattaattt
      601 gtgttaataa agacagcggt ttaccttctt cggtcactgg atagccttgc tctctcggca
      661 agtaaccacg cccaccagct ttactttgca acaatgaaag cttaccaaca tccttaaaat
      721 gcagttctat acgctctttc tctgtttcta aaaatcgttc ggcccattca ctaggaagta
      781 tatcaaaaag ttgttccatg acttaccttc tttctttttt tctaattata acatgaaaaa
      841 agcgccatat ctgacaaaag cagatacagc gcttcttgaa tttttattta tagaatttga
      901 atttcccttt acttgccaag acgcctgaac caccaattag taatagcgcg cggtcatcaa
      961 tgactttttt cataacggaa gctggatagc ctttcaagtt tttaccgaaa acgacaccaa
     1021 ttgcatcgtt atcgcctaga gagcaaactg ttcctttttc atgataaaca aagtcttgta
     1081 gatctgtttc gcctttaact aatttagcta agttcactgc agccacatcg gcttgttgca
     1141 ttgcgatttg ggcagttggt gggaatggac ggtcgtttgc tgggttgatg attagtgagc
     1201 agtcaccaac aattaaaatt tcctcgttac caggaacagt taaattgttg tttactttca
     1261 cacgaccacg accagcttca aagccagatg cttcaattac gctattgcca cgaacacctg
     1321 cagcccaaat aatggttgct gctttgattt cacgaacttc attttcactt tccgcatatt
     1381 ttacgccatc agcggtagct tctttgactg gtttaccgac atggaattct acgccgcgat
     1441 cttccagtac accaacacca taatcaacca gtttcgcatc aaattgtggt aatacttttg
     1501 gagctgcttc catacaataa atgcgcactt tttcgcgagg cacatcgtac tctttcacta
     1561 gttctggaat gcgattagtt aattccccaa gaaactcaat tccagtaaag ccagcgccac
     1621 caacgataat tgttaataat tcatcgcgtg gatctgtttt ccatttagca aattgcgctt
     1681 caatgtgcgc acggattttt ttgacggatt ctacacttgt aatagtgaag gcatattctt
     1741 tcaaaccact gattccaaat gtttctgctt ctgacccaag agcaattaat aaatagtcat
     1801 agctgatatc gccatttgca tctagtgtga ctgtcttttc gtctttatta atttttacta
     1861 cagtatcttg gataaatgta gttttcgtat tgtttacgac tttatcaagt ggatacatta
     1921 gtttttctgg ctcaattgtt ccagctgctg cctcgtgtaa ccaagtcgtt tcgtggtgat
     1981 agtcattctt attcactaga acgatttcgg cttccaagtt tctttgttgt aacttgcgta
     2041 aagtttttag tcccccgtat cctgctccga gaatgacaat ttttggttta ctcatctgtt
     2101 atcacatcta ctttccctta tatttttctt cacaaaaaaa attgcattaa gaatttctta
     2161 ctgcacctat gtagattgcg ctaaaaatct actgcaaaca atgaataaag tgaaaatggt
     2221 aagtaccaat atattcccta tttcacagct tacaaactat atcatagact ttttcacatt
     2281 cattttcaag aaagcgaact caagggttta agcttctttg tagcatggtt cgagtggtat
     2341 acgatttttt tcacaataaa gctttgagat ggcttgattt tcgtaaatat cttttatttg
     2401 atggataatt ggtctagttc attattatac tatttttatt gcagcaatcc cgtaaacatt
     2461 cttttttcat aatctatgct aaaatatgct tattgcaact ttagcgattt catagggaaa
     2521 ttacgaacta gggggtgatg tattttggat gaaaaaacaa aaatttatga tatcacgatc
     2581 attggtggtg gaccggttgg gctatttgct gcgttttatg ccggaatgcg caatgcgagt
     2641 gtgaaaataa tagaaagttt accgcaatta ggtggacaac tttccacgct ttatcccgag
     2701 aaatatattt atgatattcc gggctatcct gctgtacgcg cacaggaact tgttaataac
     2761 ttgattcaac aaatgaaacc atttgatcca accattgcgc tagaggaagc ggttcaaagc
     2821 gtagaaaaac aagttgatgg cacatttgaa atcatcacga agaaagatac acattacagt
     2881 aaagctgtta ttattaccgc tggaaatggc gcatttgaac caagacgttt ggatcttcca
     2941 gaagcagagc aatacgaagg gaaaaacatt cattatttca tcaatgattt aagtcgcttt
     3001 tcggggcgtc gcgttgccgt ttgtggtggt ggggattccg cagtggactg ggcactcatg
     3061 cttgaaaaag ttgccagttc tgtcgcgatc gttcatcgtc gtaatgcttt tcgtgcgcac
     3121 gaacatagcg tgaacaattt agaaaaatct tccattgcca tcaaaacacc atttatccca
     3181 actgaagtac tcggtaacgg cgataaatta acgcatatta ctttgcaaga agtcaaaggt
     3241 gatacaaggg aaacactgga gattgacgat ttcatcatta actatggttt cgtttcttcg
     3301 cttggtccaa ttaaaaattg gggcctagag ctagaacgca attcgattgt cgttaattca
     3361 aaaatggaaa cgagtatccc aggaatttat tgtgcaggtg atatttgcac gtatgacggt
     3421 aaagtaaaac taatcgcgac cggattcggt gaagctccaa cagctgttaa taacgcgatg
     3481 aatttcattg atccaaaaac acgcgtgcaa ccaatgcact ccacatcttt attcgaataa
     3541 caaccgaaac cacgaggcga cttgtggttt tattttttac tcaccgggaa aagttctttg
     3601 tagatatttt ttaggaggag attagcaatg aatgtactcg taattggcgc aaatggcaaa
     3661 atcggccgtc ttttagtaga aaaacttgcc atggaaaaag gctttttcgt ccgagcaatg
     3721 gttcgaaaag ccgaacaagt aagcgaactt gaaaaacttg gcgctaagcc gattatcgcc
     3781 gatttaaaaa aagatttcca ctatgcctat gatgaaattg aagctgttat tttcacagca
     3841 ggatccggtg gtcatacgcc cgcttccgaa actatcaaca ttgaccaaaa cggcgccatc
     3901 aaagccatcg aaactgctaa agaaaaaggt gtacgtcggt tcatcattgt tagctcttat
     3961 ggcgccgaca atccagaaaa cggtcccgaa tccctcatcc attatttaaa agccaaacaa
     4021 gcagccgatg aagaactaaa aagaagcggt ctcgactaca ccatcgtccg cccagttggc
     4081 ctttcagatg atccagctac tggcaaaatc gctgaagttt ccgaaaaacc tacaacgact
     4141 atcccgcgcg ctgatgttgc agattttatt agtgaagctt tatccgaaaa atctagtttc
     4201 tataaaacct ataccatcga aagtggcgac acacccatta aacatttttt tgattaataa
     4261 aaagcgatga gccaaattac gcgctcatcg cttttttcta tattaaaacg gattctcttc
     4321 caaaaatgta tatatattcg caaccaattc ttctgctgtt tctccgcgga ccacttcccc
     4381 gtccactaaa gcaaacaaac tcgtcgcgca taaatcacaa tatgtcagac aatcatattc
     4441 aatcacgtct aaactatcat ccgcatctaa tttcgcaaaa gctgcatctg ccccgctcgc
     4501 caaattattc acgcaaaatt ccacaatcgg attcatttcc acttgcctcc tagactgtta
     4561 catcgttgcc aagtaaccac ggtcggtcat tacttgataa atatctttca accgaggatt
     4621 gccttccgcg ataatttcac catcaaccac aatgactggg tacatataat cttcctcgac
     4681 aattttattc gccatatccg ctaaagcctt ctcattcggc ggattaaaaa tatccacata
     4741 ctccaccaca aacggctgcc ctgaaaactt ccgaccaatt gcagctcgaa gccattcctc
     4801 tgtttccttc gaggatggcg ctccgacaca actcgcacaa atagtcgttg aaccataaac
     4861 atataatttc gcttcattta ccatcacgct tcacctcact attattgtac aaaaacccac
     4921 caaaaaaagc gactaagctg tttcacgaag cataactatt aaattttatg aatttttata
     4981 aagatatgaa ttgacacgaa tttacagata tattataata tttccaatac attgctaatc
     5041 tttaaagcag tagtgtatta atatgataaa ttatctctag gttgtacccg tgatttcacg
     5101 gtcaacatat aagtaacact ccctttaaca attgggcgcg caacccaatt gtctttcaac
     5161 cttaccagtt gaaagagcac gttcctttct gagccttagg aacgtgtttt tgtttggccc
     5221 gttcgaagca aagcgagtta cgggccaaat atgcatgcga gtgaaacgag catgtaatcc
     5281 ttcccgtaaa atgcgccctc cacacaacct ttcacccagc atcaaaatcc ttccaccatc
     5341 tatcgaaaac ccacactccc attcacccgt tcgaagcaaa gcgagttacg ggccaaatat
     5401 gcatgcgagt gaaatgagca tgtaatcctt cccgtaaaat gcgccctcca cacaaccttt
     5461 cacccagcat caaaatcctt ccaccatcta tcgaaaaccc acactcccat tcacccgttc
     5521 gaagcaaaac gaattacggc ccaaatatgc atgcgagcat gtaattcttc ccgaaaaata
     5581 tatcctccaa acaaatactt ttcaatactt tcagaataat ataaaatcat tgcccaattt
     5641 atatgttata tatatccatc tacatccttt taacgtctgt ctattgaaga aaaacctagc
     5701 tctatcaaca cattcccatc gtaaaacagt actaaaaaca attatgtcga aaccttgaac
     5761 ctcactctat tttaagtaaa tcccatcaaa aaaaccatgc ttaataaaga ttcctcatga
     5821 tattataact ttgcttagaa atgtattcgg ttggaaatac tactttaatc aattaatttt
     5881 gttgttgaaa tagttaattt taacgaataa ataattacga atacatttca aaaaaacaag
     5941 gaggaaatta aacatatgca aaaagcaatc aaaataatgt ta
//
LOCUS       DASDXX010000161         5970 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.161, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000161 DASDXX010000000
VERSION     DASDXX010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5970
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.161"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..134
                     /locus_tag="U0280_002320"
     CDS             <1..134
                     /locus_tag="U0280_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HEM2272244.1"
                     /translation="QLAKGQKGVIDIEVGSYFQSYYQQNAEKKAAEEAAKEKKETNE"
     gene            499..1779
                     /gene="ftsA"
                     /locus_tag="U0280_002321"
     CDS             499..1779
                     /gene="ftsA"
                     /locus_tag="U0280_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEM2272245.1"
                     /translation="MGDSEIYVSLDIGTASVKVIIAEMADDRLNIIGVGNVESSGIKK
                     GIIIDIDKTVESIKKAIEQAERMVGVEISQVIVGVVSSQVHLEACRGIVAVGSENREI
                     TDEDVWNVMDAAQVVPLSPEREIINTIPDQFVVDGLTGITDPRGMIGVRLEMEGTLIT
                     GSKTILHNTLRCVERAGLEISDIALQPLAEASISLSEDDKEFGTALVNVGAGTTTVSV
                     FEQGRLTYTGVIPVGGDNITKDLSLGLNTSTANADRVKLDHGYAFYDDASPDEVFAID
                     VIGSDQKQHFTQVEVADIIEARMEEIFQLVVEELTRVGKTHLPGGYVLTGGSMAIPGA
                     IDLAGKTLAAHVRLAIPDYIGVREPSFTTAVGLIKYAYQMAELEGRDVSSSASEPRYD
                     DEAPKQKQPKPKQKKSDDEKVSTKMKNFFGAFFE"
     gene            1846..3021
                     /gene="ftsZ"
                     /locus_tag="U0280_002322"
     CDS             1846..3021
                     /gene="ftsZ"
                     /locus_tag="U0280_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM2272246.1"
                     /translation="MLEFDTSSESLATIKVIGVGGGGNNAVNRMIEHGVQGVEFISVN
                     TDAQALNLAKAETKLQIGTKLTRGLGAGAVPEIGKKAAEESREQIEEALKGSDMVFVT
                     AGMGGGTGTGAAPVIAQIAKEMGALTVGVVTRPFGFEGPKRTKQALTGTEAMKEAVDT
                     LIVIPNDRLLQIVDKNTPMLEAFREADNVLRQGVQGISDLIAVPGLINLDFADVKTIM
                     TNRGSALMGIGIATGENRAAEAAKKAISSPLLETSVDGAKGVLMNITGGSNLSLYEVQ
                     EAAEIVSSASDEDVNMIFGSVINDELKDELIVTVIATGFDEEKQAQQQAQANRRPNQS
                     IQVNRPNYAVQDEQQNDYAQNAPQQANAPVHEQQAEPQQNSSDVDVPAFIRNRNRRG"
     gene            3140..3829
                     /locus_tag="U0280_002323"
     CDS             3140..3829
                     /locus_tag="U0280_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEM2272247.1"
                     /translation="MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITE
                     LYDLGIRHFGENRADVFQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR
                     SSLAKEIEKRATKPVKCFLQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMA
                     PITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVG
                     RALVSDDNMEV"
     gene            3833..4291
                     /locus_tag="U0280_002324"
     CDS             3833..4291
                     /locus_tag="U0280_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEM2272248.1"
                     /translation="MGLSNKFKSFFFLDEEEEYYEEEVAREPEPMQKKTKKEKPNKNR
                     FYAVEEDDAKVVSMQGAQFSSRMVLAEPRVYAEAQELADYLKEYKSVVVNLQRISHDQ
                     ATRIVDFLSGTVYALGGDIQRVGNNIFLCTPDNVEVDGSISEMLDEQNFM"
     gene            4314..4604
                     /locus_tag="U0280_002325"
     CDS             4314..4604
                     /locus_tag="U0280_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEM2272249.1"
                     /translation="MQSILYQVVEIILFIIRWLPTLMFIYFLMSWFPGARESKIGQFL
                     ARIFEPILEPFRRIIPPIGMFDISSLVAYFIFQYAMRVLTGLIQVYVIPMLF"
     gene            4729..5505
                     /locus_tag="U0280_002326"
     CDS             4729..5505
                     /locus_tag="U0280_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM2272250.1"
                     /translation="MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRF
                     ITETVIGGYDEINVQFFGGVAHAERRRALIYPDYYTPTEADFEIALFHIRYPVKFTTL
                     THQKILGTLMSLGMKRDIFGDILNNGTEWQLLVESTMKDYLTLQLEKIGKVNVMLEET
                     DLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENP
                     DFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEIGYLK"
BASE COUNT         2016 a          963 c         1293 g         1698 t
ORIGIN      
        1 ctcaacttgc taaaggacaa aaaggagtta ttgatattga agtaggttct tatttccaaa
       61 gttattacca acagaatgcc gagaaaaagg cagccgaaga agcagctaaa gagaagaaag
      121 aaacaaatga ataatatttt tttcttctcg ccaatttttg gcaaatttat agataacaga
      181 tgtttcaaaa aggtaacaaa acgatgacct caagtcagga gatgccaaca cttgttcgct
      241 ttttgaataa aatgaaaaaa atatcttaag aatttgccaa aaaatgttct ttgtgctttt
      301 attaccttct ttcttagtgt agactgtaaa taagtgattt tgtatgttag gcagaatggg
      361 caatcattct acactgacgc cataaaaata aagaaatttc atagcttttc aagaaagtta
      421 aaaaaccggc ttttgctcgg tataaaaaaa tgaaataaat acatgttaaa tgactagaat
      481 aaaaggaggt gccgataaat gggtgatagc gaaatttatg taagtttaga cattggaaca
      541 gcttctgtga aagtaatcat cgcagaaatg gctgacgata gactcaatat tatcggtgtt
      601 gggaatgtcg aatcttccgg gattaaaaaa ggaattatta tcgacataga caagactgta
      661 gaatccatta aaaaggcaat tgaacaagca gaaagaatgg ttggcgttga aatttctcaa
      721 gtaatagttg gggtagtatc gagtcaagtg catttagaag cttgccgagg aattgtggca
      781 gtaggtagcg aaaatcgtga aattacagat gaagatgtct ggaatgtaat ggatgccgct
      841 caagttgttc ctctatctcc tgaaagagaa attattaaca ctattccaga tcaatttgtt
      901 gtagatggat taactgggat tacagatcca cgtggaatga ttggtgttcg tctagaaatg
      961 gaaggcacat taatcactgg ttcaaaaaca attttacata atacattacg ttgtgtggaa
     1021 cgtgcaggcc ttgaaatttc tgatattgct ttacaaccac ttgcagaggc atccatttcc
     1081 ttatcagaag atgataaaga atttggaaca gcactcgtga atgttggagc aggaactaca
     1141 accgttagcg tgtttgaaca aggacgacta acttatactg gtgtcattcc agttggtgga
     1201 gataatatca cgaaagactt atcacttgga ctaaacactt ctactgcaaa tgccgatcgc
     1261 gttaaattgg atcatggcta tgcattttat gatgatgctt ctccagatga agtttttgct
     1321 attgatgtta tcggtagtga ccaaaaacaa cattttacac aagtagaagt agcagatatt
     1381 atcgaagcgc gtatggaaga aattttccaa ttagtagtgg aagaacttac tcgtgtcggt
     1441 aaaacgcatc ttccaggagg ttatgtacta actggtggtt cgatggctat tccaggagca
     1501 attgatttgg ctggaaaaac cttagcagcg catgttagac tagcgattcc tgattatatt
     1561 ggtgttcggg aaccttcctt tacaaccgca gtaggcttaa ttaaatatgc ttatcaaatg
     1621 gctgaattag aaggacgcga cgtaagcagt tcggcaagcg aacctcgtta cgacgatgaa
     1681 gcaccaaaac aaaagcaacc taaaccaaaa caaaagaaat cagatgacga aaaagtatca
     1741 acgaaaatga agaatttttt cggcgcattt tttgaataaa agcgaatagc tgatagtcca
     1801 gcaagaaaat cgtatcgtat aaatcggcaa ataggaggca ataatatgtt agaatttgac
     1861 actagttcag aaagtttggc aacaattaaa gtaatcggtg ttggcggtgg cggtaacaac
     1921 gctgtaaacc gtatgattga gcatggtgtt caaggagtag aatttatctc cgttaataca
     1981 gacgctcaag cacttaactt agcaaaagca gaaacaaaat tacaaatcgg tacaaaatta
     2041 acacgtggtt taggcgcggg agctgtacct gaaattggta aaaaagctgc agaagaaagc
     2101 cgcgaacaaa ttgaagaagc tttaaaaggc tctgatatgg tattcgtaac tgctggaatg
     2161 ggcggtggaa ctggaactgg tgctgcacct gttatcgctc aaatcgcaaa agaaatgggc
     2221 gccctaactg taggtgttgt tactcgacca tttggttttg aaggaccaaa acgtacgaaa
     2281 caagccttaa ctggaacaga agcaatgaaa gaagcggtag atactttaat tgttattcct
     2341 aacgaccgtc tacttcaaat tgtggataaa aacacgccaa tgcttgaagc tttccgtgaa
     2401 gcagataatg ttttacgtca aggtgtacaa ggtatttctg atttgattgc cgttccaggt
     2461 ttaattaact tagactttgc cgatgtgaaa acaattatga ctaatcgtgg ttctgccctt
     2521 atgggaatcg gtattgcaac tggtgaaaac cgtgctgctg aagctgcgaa aaaagcaatt
     2581 tcttctccac ttcttgaaac ttccgttgac ggagcaaaag gtgtcctaat gaatattaca
     2641 ggtggatcta acctaagtct ttatgaagta caagaagcag cagaaatcgt atcaagtgca
     2701 tcagatgaag atgtaaacat gattttcggt tctgttatta acgacgaatt aaaagatgaa
     2761 ctgattgtaa ctgttattgc aacaggtttt gatgaagaaa agcaagcgca acaacaagcg
     2821 caagcaaatc gccgtccaaa tcaatctatc caagtaaatc gtcctaatta tgctgtacaa
     2881 gacgaacaac aaaatgatta cgcgcaaaat gcgccacagc aagcaaatgc accagttcat
     2941 gaacaacaag ctgaaccaca acaaaatagt tcagatgttg atgtaccagc atttatccgt
     3001 aaccgtaacc gtcgcggata atacttataa cataatttca cccggccact tttgaagcat
     3061 tgccaagtga ccgggtatct gattataaca agaagcgttt taaataaagc acttcgggaa
     3121 ttatataagg tgataaaaaa tgacaaaaca agctaattta caaaaagtaa cggcacaaat
     3181 agagcgtgcc tgtgaagaaa gtaatcgtca gccggaagat gtaacgttag tagctgttac
     3241 aaaaacgatt gatgtagctg gaatcacaga gctttatgat ttaggtatcc gtcactttgg
     3301 tgaaaatcgt gcagacgttt tccaagaaaa aacagtagca cttgcagata aagaagacat
     3361 ttgttggcat tacattggtt ctttacaaac acgtaaagta aaagatgttt taccaaaaat
     3421 cgattatttg cattcgcttg accgatcatc gctagcaaag gaaatcgaaa agcgagctac
     3481 taaaccagtg aaatgtttcc ttcaagtgaa tatttctggt gaggaaagca aacatggatt
     3541 ttccaaagaa gaggcgctat cttttttaca agaagcgaat tttacgttca ttgagattgt
     3601 tggtttaatg acaatggcac ctattacaaa tagcgacata gagctgcatc acgtatttca
     3661 tgagttaaag caattgcagc aagaaattca cgcgcttcag ttaaacaata ttccatgtac
     3721 agagttatct atggggatga cgaatgatta tggagttgca attacggaag gtgcaacatt
     3781 tatacgagta ggaagagctt tggtgagtga cgataatatg gaggtgtaac aaatgggact
     3841 atcgaataaa tttaagtcat tctttttctt agatgaagaa gaggaatatt atgaagagga
     3901 agtagcgagg gaaccagaac ctatgcaaaa gaaaacgaag aaagaaaaac caaataaaaa
     3961 tcgtttttat gctgtagaag aagatgatgc gaaggtggtt agtatgcagg gagctcagtt
     4021 ttctagtcgt atggtacttg ctgaaccgcg tgtgtatgca gaggcacaag aacttgcgga
     4081 ttatttgaaa gaatataaat ctgttgttgt aaacttgcaa cgtattagcc atgatcaagc
     4141 gacacgtatt gtcgatttct tgagtggaac agtatatgca ttaggtggag atattcaacg
     4201 cgttggcaat aatattttct tatgtactcc agacaatgtg gaagtggatg gctctatttc
     4261 cgaaatgctc gatgaacaaa actttatgtg atgaagtaga ggtgtgagct agattgcaaa
     4321 gtattttata tcaagtggtg gaaatcattt tgtttattat cagatggttg ccaacactca
     4381 tgtttattta tttcttgatg agctggtttc ccggtgcaag agaatcaaaa atcggccaat
     4441 ttttagctcg tatttttgaa ccgattttag agccttttag aaggattatt ccgccgattg
     4501 gtatgtttga tatttcgtcc cttgtggctt atttcatttt ccaatacgcg atgagagttt
     4561 taaccggttt aattcaagtg tatgtcattc caatgctatt ttaaaaagcg cgcccgtttt
     4621 caaaatgggt ggcttttttt attaataagc aagattagcc tagtagcagc tgttttcatg
     4681 gtataatagg gctaaagact cggaacggat tgaaagggag aaattaggat ggatggaatt
     4741 tatcagcatt ttcgcgcgga agaatacgca tttattgata agattttagg gattacgatg
     4801 caagttgaga atgaatacac gccacaactt acggatttct tggatccgag gcagcgtttt
     4861 attaccgaaa cagttatcgg tggttatgat gagatcaatg tacaattttt tggtggagtg
     4921 gcgcacgcag aacgacggcg cgcactgatt tatccagatt attatacgcc gacagaagcg
     4981 gattttgaga ttgctttgtt ccatatacgc tacccggtaa aattcacgac cctcacacat
     5041 caaaaaatcc ttggaacact gatgtcgctt ggaatgaagc gtgatatttt tggagatatt
     5101 ttaaataatg gcactgaatg gcagttatta gtagaaagta caatgaagga ttatttaaca
     5161 ttacaactag aaaaaatcgg gaaagtaaat gtgatgttag aggaaacgga tttagctaat
     5221 gctgtttatg ccccggtcgt ttgggaagaa atgggcttaa ctgtttctag tatgcgactt
     5281 gacgtgatta ttagtaatgc acatcatatt tctagacaga aggcgaaaca attggttact
     5341 gcgggactag taaaagtcaa ctggaaaaca gtggaaaacc cggattttga atgtgaagaa
     5401 gaagatgtat tgtctgctcg cggatatggt cgggtaaaag tactatcaac tggcggcaga
     5461 acgaaaaaag ataaaattag gattgaaatt ggctatttaa aataaaaacg aaagcagttg
     5521 ctgctttcgt ttcagatata gtaatgagta gtacctaatg tcatatgttg tcaaatggtc
     5581 ttatgttatt attaaatatg aaaagagagt catgcgctaa gatgactctc aagtataagc
     5641 ccatttaagg tggcagctag cttaatagat tataaaaata accactaaac cgaccaaagt
     5701 ttatgagtgg ttattttttg ttattttgac tgttcaatag caacaccagg gttgcaaaag
     5761 acagtgcttc ataaacagtc atgggttatc ctttccaggc aatcctaaca aaaatattca
     5821 tagcatcacc ctttcttgtt gaaagagcta gccaccacca taaacttgct tactcttttt
     5881 gtatagcatt gaaactcttt tggaaaaagg gtaaatgcta tggttatgta ctaaaaatat
     5941 tttttatcgc gagtttctac aaaacaacga
//
LOCUS       DASDXX010000162         5928 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.162, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000162 DASDXX010000000
VERSION     DASDXX010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5928
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.162"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..861
                     /locus_tag="U0280_002327"
     CDS             <1..861
                     /locus_tag="U0280_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2272251.1"
                     /translation="QFEPFNSTAIPYDAVDDYLSATYQAVHNQFVASAKIYEYGKALN
                     PDLMIGTMLADCTAYPFSCDPDDIVLAMKRNRMEYFFADVQFQGEYPQYALNYFDENN
                     IHIEITEDDKAILQKNTMDYLALSYYYSQMVDSKKNDLDPASITPNPHLKANPWGWAV
                     DPKGLYNALSQYWDRYHKPIIIAENGFGMYDKLENGEIHDDYRIDYLSAHLKEMKRAM
                     YDGVEIIAYCAWGPIDIVSCSSAQMEKRYGFIYVDLDNEGNGTGKRIKKDSFSWYKKV
                     IESNGEDLEA"
     gene            934..2832
                     /locus_tag="U0280_002328"
     CDS             934..2832
                     /locus_tag="U0280_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2272252.1"
                     /translation="MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINE
                     ATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILY
                     ISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI
                     KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIE
                     TQKTLIRKHSKEYEISKKIAKILSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGE
                     LDQFVDKKIIEALKSVLANVEETYLIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLS
                     LLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEI
                     GLLIEDYHDLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSI
                     FIHPLLTTKDIKKISNRIQTKKKILENHLRGQQIDRYIVRSLYANQIDPSELTPAKIR
                     EQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVSIMTLQE
                     PIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKL
                     KMMMEESE"
     gene            3125..4696
                     /gene="abc-f"
                     /locus_tag="U0280_002329"
     CDS             3125..4696
                     /gene="abc-f"
                     /locus_tag="U0280_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HEM2272253.1"
                     /translation="MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTT
                     LMEVIAGAKEATSGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKAIQHAMRQNPSVLLA
                     DEPTSNLDVESVKHLERQWSDFHGALIIISHDRTFLDALCTEIWEIKNQKIHVYKGNY
                     HAYLEQKQQQENQAELVYKEFKNKKQQLQASQTHHEIEAGRIVKPGKRLNNKEASAFK
                     AGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKMITPDNRVIKKGNTILSVKET
                     TYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYF
                     DQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLL
                     LSMLLVSDANFLILDEPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLL
                     VIENNEMTFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAML
                     EQDYQEIITKRQQFS"
     gene            4818..5858
                     /locus_tag="U0280_002330"
     CDS             4818..5858
                     /locus_tag="U0280_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM2272254.1"
                     /translation="MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQ
                     FIARVIPKNKFLAVIVGSLIGVFFPSCECGIVPIVRNLLAKGVPLHAGIAFMLTAPII
                     NPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASE
                     KVAVPATNLALAGGPSESTTTNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQ
                     KIWHTVQHAVDEFFSVGKYLVFGALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAF
                     VLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMMLGAFKAKFVLLIVTS
                     VTIVVFLYALVI"
BASE COUNT         2095 a         1151 c         1083 g         1599 t
ORIGIN      
        1 caattcgaac catttaactc tactgcgatt ccatatgatg ccgtcgatga ttatttatcc
       61 gctacgtatc aagctgttca taaccaattt gttgcaagtg cgaaaattta cgaatacgga
      121 aaagcgctaa atcctgattt aatgattggt acaatgctcg ctgattgcac agcctatcca
      181 ttctcctgcg atccagatga tatcgtactc gcaatgaaac gcaaccgcat ggaatatttc
      241 ttcgcagacg tgcagttcca aggcgaatat ccacagtatg cgcttaatta ctttgacgaa
      301 aataatattc atatagaaat cacagaagac gacaaagcca ttttacaaaa aaacaccatg
      361 gattatttag cactttccta ttattattcc caaatggtgg actccaagaa aaatgatttg
      421 gacccagctt cgattacacc aaacccgcat cttaaagcta atccgtgggg ctgggcagtc
      481 gatccgaaag gcttgtataa cgcattgtcg cagtactggg acagatatca taaaccaatt
      541 atcattgccg aaaatggttt tggaatgtat gacaaattag aaaatggcga aatccatgat
      601 gattaccgga ttgattattt atccgcgcat ctaaaagaaa tgaaacgcgc catgtatgac
      661 ggcgtagaaa ttatcgcata ttgcgcttgg ggaccgattg atatagttag ttgctcctcc
      721 gcacaaatgg aaaaaagata cggtttcatt tacgttgatt tagataacga aggaaacggt
      781 acaggcaaaa gaattaaaaa agacagcttt tcatggtata aaaaagtaat agagtctaat
      841 ggggaagact tagaagctta atgtaacaga gcgccagttg tggtagttga tagctaatac
      901 aactggcttt cgatatatag ggggtaacaa aaaatggata ctcaaaaaga aatactagct
      961 tatttgcata aacaggaaaa taagtgggtt acctcaaatg agttagcagc tttttgcgag
     1021 tgtacaacac gaaccattcg caacaacatt tctaaaataa atgaagcgac accgaattta
     1081 attcgttctg caaaacaagg ctatcaaatc aaccagcgta ttccatttga acttcagaca
     1141 gaaagtgatg taacagaacg aaagtcaaaa ctcttactcg aattaattaa aaactctact
     1201 aaaggcgttg acctgtttga acttgcggat attttatata tttcagaagt aaccttaaaa
     1261 aaagacatcc aacaattaaa aaacgaacta aaagaagccg atgtccaaat cgtcaccagt
     1321 aaagaccgaa tcaaattaat cggaaaagaa cgtgccaaac gaaaatatat gatttccttg
     1381 ctatatgaag aaggcggata ccgtgaaagt atcaaaagtc gcattcaaga aatgattgaa
     1441 tttgtttcta tcgataaact gcaaaacatc gtaaaagaag ttttaacgga agaatccatt
     1501 acaaccaatc aatattcgat gatgaacatt gtcttacatt acgccattag catcgtccga
     1561 attcaacaag gaaatacact cattgaaacc caaaaaacac tcatccgaaa acactccaaa
     1621 gaatacgaaa tatcgaaaaa aattgctaaa attctctcgg aagaatacca aatccatttt
     1681 tcagaggcag agacaaaaca actcggactt ttatatgttg gcttgcaaaa tgaacaatct
     1741 gctaatgcca atcatggcga actggaccaa tttgtcgata aaaaaatcat cgaagcactt
     1801 aaaagcgtgc tcgccaatgt ggaagaaacc tatctcatcg atctccaaaa tgagcaactt
     1861 tttatcaagc tagcgattca cgtccaaagc ctatactatc gctcacgtta caaagcgtac
     1921 accagaaatt taagcttact tgatattaaa acgtcttacc cagtaacttt tgatattgct
     1981 gtttacattt cttctttgct acaagaaaaa ctagcgattg actttaacga agatgaaatt
     2041 tcttttatcg cgctgcatat cggctctttt ctagaaagtg aaaaccgaga ttatattcgc
     2101 ttagaaatag gcctacttat tgaggattat cacgatttaa gaacaaatat gctgaaaaaa
     2161 ctgcgcgcac gatttgaaaa tgaagctacc atcaaactga tagaaaacga ggactctgaa
     2221 gaaaattttg atatcatttt aacaacaaac cgagatattg ctcttgaaaa agcgggttcc
     2281 atttttattc atcccttact aacgacgaag gatatcaaga aaatcagcaa tcgaatccaa
     2341 acaaagaaaa aaatcttgga aaatcacttg cgaggtcaac aaattgatcg ctacatcgtt
     2401 cgttccctct acgccaacca aattgacccc tcagaactga cacccgcaaa aatcagagag
     2461 caaatgattt ctaaaatgga aaaacaaacc ttcgtcacgc cggaatttaa agaaaaagtc
     2521 gaaaaaaggg aacgaatggc gccaacaagc ttcccatccg gcattgctat accacattct
     2581 atcaagaatg atgcccttca aagtggtgta tctataatga cgctacaaga gccgatttat
     2641 tggaatgacg tcaaaataaa aataattgct ctcgtcgcca tcagcaaaaa agatgcaaca
     2701 gagttcaatg atttttttga aaagtttgta gaaatcgtct ccgaaccgat taatactaaa
     2761 cgtttatcaa tggccgaaag tttcgaggag ttcatccaaa aactaaaaat gatgatggaa
     2821 gaaagtgagt aaatggccac acataagccg tgtaattcta tttacacggc ttataaaggt
     2881 tgaagtgacg ataaaattac gctataatat aaccatcaaa cgaaaaggag tgttatctta
     2941 agccaatgaa attctaatcc tgtattatat gaaaaaatga agaaagctat ccaattctcg
     3001 gatagaaact attttttcgg acgggattcg tatgttcatt tcgcatgata actctttgct
     3061 acaggccttt ttttggcgta gcctcgcgga ttcctctctg aaaatattca ggaggttatt
     3121 ttttatgtct acaatcgaaa taaatcaatt aaaaatagaa gtagcagata gagttttagt
     3181 agaaattcct catctgctag ttagtaaaaa agcaagaatc ggcatcatcg gtcaaaatgg
     3241 tctaggaaaa acaacgctaa tggaagtgat tgctggcgct aaagaagcaa catctggcac
     3301 ggtgactacc caaggaaaac ttgcttacat caaacaactt tccactgata caagtacgaa
     3361 aagcggcggc gaaaaaacaa gaaaagcaat tcaacatgcg atgcgccaaa acccaagtgt
     3421 tctcctagca gatgaaccga caagcaacct cgatgtcgaa agcgtcaaac atttagaacg
     3481 tcagtggagc gatttccacg gtgcgctcat aattatatcg catgaccgta cctttttaga
     3541 tgcactttgt acagaaatat gggaaatcaa aaaccaaaaa attcacgtat acaaaggaaa
     3601 ctaccacgcg tatttagaac aaaaacaaca acaagaaaac caagcggaac tcgtatacaa
     3661 agaatttaaa aacaaaaagc aacaactaca agcctcccaa acacaccatg aaatcgaagc
     3721 aggtcgcatt gtcaaacctg gaaaacgcct aaacaacaaa gaagccagcg cgtttaaagc
     3781 cggaaaaggc acacaacaaa agaaacaaca cagtaccatc aaagctttag aaaaacgaat
     3841 tgaacggctc ggcaatgtcg aaaaaccaca tacaactaaa ccaatcaaaa tgatcacccc
     3901 agacaatcgc gtcataaaaa aaggtaatac gatactaagt gtcaaagaaa caacctacga
     3961 gatcgcagga cgaaaactat ttgaaacaaa agctttttct attaaagcag gggataaagt
     4021 ggcgctaatc ggtgaaaatg cgagcgggaa aactacattt ttaaaagaaa taatccaaga
     4081 aaatcctaat ctcctatgta atccccaagc gaaaattgct tatttcgacc aagaattgaa
     4141 tggattaaac caaacgaaat ccctgttaga aaacatctcg gaaattagcg ttcaaaccaa
     4201 gcaagtaaac agagaagtac taggtagcat gcattttaaa gaaagcgatt tgcataagga
     4261 agtgcgcatg ctctctggcg gggaacgagt gaagttgctg ctcagtatgc tcctcgttag
     4321 tgacgccaat ttcttgattc ttgatgaacc aaccaactat ttggatatct atgcaatgga
     4381 agcgctggaa acgttaatca aacaatttgc ggggacagta ctattcgttt cgcatgatag
     4441 aacttttgtt aaccacgtgg cagaacaatt actcgtcatc gaaaataatg aaatgacttt
     4501 ccaccggatg actttcgcgg aatatgaaga aagtaaagcg ccaagtcgca tcacagaaga
     4561 agataagttg attttagaaa tgcgcatgtc agaaattgca gccaagctta tgcaaccgaa
     4621 tttaaagccc acagaaaaag ccatgctcga acaagattat caagaaatta tcacaaaaag
     4681 acaacaattt agttaaattg ttgtcttttt attcaagcta aataaaaaat atagtcattt
     4741 atattttact tgatttctgc aaaagatagg cttagaatca aatagttatt aaaaagagta
     4801 aagaaagaag gaatcccatg tttagtcatc ttccggattc attcctccaa atgaatacca
     4861 tttttatttc tattttgatt gaggcactgc cgtttgtatt aattggagta tttattgctg
     4921 gctttattca aatgtttata tcagaacaat ttattgcccg tgttatcccc aaaaataaat
     4981 ttctagcagt cattgttggc tcgcttattg gtgtattttt cccttcctgt gaatgtggca
     5041 ttgttcctat cgttcgtaat ttactggcaa aaggggtacc gcttcatgct ggtattgcct
     5101 tcatgcttac cgctcctatt atcaacccag tagtattatt ttcaacgtat gttgcatttg
     5161 gtagtacgtg ggaagttccg ttgctacgtg ttgcgggaag tcttgtagta gctctcgttg
     5221 tcggaaatat tatcgcttat ttttataaag gaactggact caaagagcgc tttttaaaat
     5281 atgaagcagc tagtgaaaaa gtggccgttc cagcaacaaa tctagcgctt gctggtggtc
     5341 cttctgaaag tacgacaact aatttccaag tcctaacaag cgacggagca cttacagaag
     5401 acgctcataa aggacacgcg caccaccatc acggtgagga gcacgcgcat acaaaaatga
     5461 cattgagtca aaaaatatgg cataccgtac aacacgcagt cgatgaattc ttctctgtag
     5521 gtaaatacct tgtgtttggg gctttaattg ccgcagcgat gcaaacatac attaaaacat
     5581 ccacacttgt ttccataggt catggtccga ttttatccat cttacttatg atggttcttg
     5641 cctttgtatt gtccctttgc tctgaagctg atgcctttat tggcgcttct ttccgtagtg
     5701 ttttctccac acaatccatc gttgcatttt tagtgttcgg cccaatgctt gatattaaaa
     5761 atctaatgat gatgttagga gcatttaaag caaaatttgt cttattaatt gttactagtg
     5821 taacgattgt tgtcttttta tacgccttag ttatttaacc gaaagaaggt gaaagtatgt
     5881 ttcgcgtttt tattttattt ggatttggtt tttatttgat gcagttac
//
LOCUS       DASDXX010000163         5749 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.163, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000163 DASDXX010000000
VERSION     DASDXX010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5749
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.163"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..235)
                     /locus_tag="U0280_002331"
     CDS             complement(<1..235)
                     /locus_tag="U0280_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEM2272255.1"
                     /translation="MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGY
                     AETAFLTESNCADYKLEYFTPKEEVDLCGHATIG"
     gene            complement(262..738)
                     /gene="ybaK"
                     /locus_tag="U0280_002332"
     CDS             complement(262..738)
                     /gene="ybaK"
                     /locus_tag="U0280_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HEM2272256.1"
                     /translation="MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPA
                     QIFKTLVLTGDKTGNIVACIPADKTLHLKHLAKISGNKKCELIAVDTLEKLTGYIRGG
                     CSPIGMKKLFPTFIDNSAESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMIKEE"
     gene            862..1512
                     /locus_tag="U0280_002333"
     CDS             862..1512
                     /locus_tag="U0280_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5105 domain-containing protein"
                     /protein_id="HEM2272257.1"
                     /translation="MKKGLFSMVLVLAMVLVLSACGASRVEPKKAGEITVNAVVYNKD
                     TDKVKDVYGEDGSKFEKEFETSFKESFISTFTASFSSDVNLDKQVDEFYDALRKQVNE
                     KTSYTTKVTNDDKESPEIQFAVKGLDMKGVQTELVEELTKAATADPSLATDDQKMAEK
                     TMEIYTKAVQNADAVSEAKTVTLKLKADPDDDSLWKMENDMAFMQELTTAFFMGGM"
     gene            1618..2508
                     /locus_tag="U0280_002334"
     CDS             1618..2508
                     /locus_tag="U0280_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEM2272258.1"
                     /translation="MNTIKIALIQQKAVPNNKEANLKLAIKYIKEAHEKGADLVLFPE
                     MWSNGYAPPFEDAFNHPLATDFDNERTKWLNEAITEDSAYFLTLKELAKELKIGICAT
                     YLSKTEQKPQNTAIIIDRKGEIILDYAKVHTCDFSLEILLQSGEEFKVCEFDGIKLGG
                     MICYDREFPESARVLMLKGAEIILVPNACDMNPARLNQLNSRAFENMVGVAMANYPGE
                     KWGRSTAFSPIVFDENGDYRDNTIIETDDVSEGIFIAEFNLDEIRTYRENETWGNAYR
                     KPQTYTDLISLDVEAPFKRN"
     gene            complement(2543..3244)
                     /locus_tag="U0280_002335"
     CDS             complement(2543..3244)
                     /locus_tag="U0280_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HEM2272259.1"
                     /translation="MVLLGALVNGLGILIGSVIGMKLHNIPERMKDTVMKGMGLSVIV
                     LGIQMAFKTSNSLIVILSICFGAVIGEWLNIDYHLNQLGHWIERKVGAKGKSNVSKGF
                     VTATLIFVIGAMGIIGALDSGIRGNHDVLYTKSVMDGFIALLLSTTLGWGVMLSAIPV
                     FLFEGIIALFATQINQFVPADLMALIIKELTATGGIMILAIGLNLLGLTKIRVANLVP
                     GILVVALIVTGLYYF"
     gene            complement(3359..4000)
                     /locus_tag="U0280_002336"
     CDS             complement(3359..4000)
                     /locus_tag="U0280_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2272260.1"
                     /translation="MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDI
                     NILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVG
                     GAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFE
                     PGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNERFTVAGK"
     gene            complement(4084..5004)
                     /gene="rarD"
                     /locus_tag="U0280_002337"
     CDS             complement(4084..5004)
                     /gene="rarD"
                     /locus_tag="U0280_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HEM2272261.1"
                     /translation="MENKQNGQLGGIIAGALAYVCWGVLPIYWKLVTNVPPMEILAYR
                     IIWSFIFMLFLIVCLRKASMVFQETKDVLLKPKTLIAIIAAAFLVTANWYLFIYTVNS
                     GHVTEASLGYYINPLVNVLLATVILKERLSRGEIIAVISATIGVLILTWHLGSVPWAA
                     IGMAVTFSLYGLIKKVVSVSVWTGLTLETMIITPFALIYVIFFATNGLMQYAAQTNII
                     LVGAGVVTAIPLLLFATAAKKISYTMVGFLQYIGPTLMLALGVLLFKESFDHIQLFAF
                     MFIWLALIIFTISHIYSAAKIKQLANAAKK"
     gene            complement(5113..5643)
                     /locus_tag="U0280_002338"
     CDS             complement(5113..5643)
                     /locus_tag="U0280_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEM2272262.1"
                     /translation="MTVEKWNVDPAHSSIEFQVKHMMVSKVKGAFSDFTADIEMDPED
                     LTSAKLNFYVAAASVDTRQAQRDGHLKSEDFFNVEKYPNVTFSATKITADGDDEYEVT
                     GDLTIRDVTKPLTLEVSYEGTGKDPNTGNMVAGFEAKGKFNRKDFGLNYNAALETGGV
                     LIGDEVKLNIQIEASK"
BASE COUNT         1861 a         1117 c         1056 g         1715 t
ORIGIN      
        1 tgccgattgt cgcatgacca cataaatcga cttcttcttt cggagtaaaa tattctaatt
       61 tataatcagc acagttagat tcagttagga aagcagtttc cgcatagcct aattgttttg
      121 caatggccat tttttgagca gtggcgagtg ttggttcgtt caatacgaca cccgccttat
      181 ttccaccttt attattctta ctaaatgcac ttgcaacata aacagataaa ttcataaaaa
      241 taaaactccc ttgtaaaaac tttattcttc cttaatcatc gcaaactccg cacgtactac
      301 ttttttcaaa tcagtagggg ctagttcgat ttgtaatcct ctttttccag ccgaaatcag
      361 tatagtatca agcgattcag cgctgttatc aataaacgtt ggaaataatt tcttcattcc
      421 aatcggcgaa catccaccgc gaatatagcc agtcagcttc tctaacgtat ctaccgcaat
      481 caattcacat tttttattac cgctaatctt tgccaaatgt tttaaatgca aagtcttatc
      541 ggcaggaatg cacgctacaa tatttcctgt tttgtcacca gtcaggacta atgttttaaa
      601 aatctgtgcg ggattattcc ctgtttctgc cgcaacatga agcgcatcaa gggaatcctc
      661 gctccaggca tactcacgta attcatagtt taccttctgt ttatctaaaa tccgacacgc
      721 atttgtcttt ttattcaagt ctttcacctc aattaattca gaaatatgta taatttatga
      781 cactttttgt gaaatagttg gcttttccct tttcattctg tacaatgaag tggaattcaa
      841 ataagaaagg gagatttact aatgaaaaaa gggttattta gtatggttct tgtgctagca
      901 atggtacttg tattaagtgc atgtggcgca tcaagggtag aaccaaaaaa agcaggagaa
      961 atcacagtta atgccgtagt ctacaacaaa gatacggata aagtaaaaga tgtatatggt
     1021 gaagatggtt ctaaattcga aaaagaattt gaaactagtt ttaaagaaag ctttatcagt
     1081 acatttacag caagcttttc tagtgatgta aacttagaca aacaagtgga tgagttttat
     1141 gatgcacttc gcaaacaagt aaacgaaaaa acttcgtata ctactaaagt aacaaatgac
     1201 gacaaagaaa gtccagaaat tcaattcgct gttaaagggc ttgatatgaa aggcgttcaa
     1261 acagaattag ttgaagaatt aacaaaagca gcaacagctg atccatctct tgcaacagat
     1321 gatcaaaaaa tggctgaaaa aacaatggaa atctatacga aagctgttca aaacgcagat
     1381 gcagtatcag aagctaaaac agttacactt aaattaaaag cagatccaga tgacgattct
     1441 ttgtggaaaa tggaaaatga catggcattc atgcaagaat taacaacagc attctttatg
     1501 ggcggcatgt aagcttttat atggcaaaac accaataact ttcgggttgt tggtgttttt
     1561 ttgtttccaa gaataaatgt tataataaca taaagattta ctaatgggag gcgctatatg
     1621 aatactataa aaatcgcatt aatccaacaa aaagcagtac caaataataa ggaagccaat
     1681 ttgaaattag ccattaaata tataaaagaa gcgcatgaaa aaggagcaga tttagtactt
     1741 ttccctgaga tgtggtcaaa tggttatgcg ccaccttttg aagatgcttt taatcatcca
     1801 ctagctactg attttgataa tgaaagaacc aagtggttaa atgaagctat cacagaagac
     1861 agtgcgtatt ttttgacact gaaagaactt gccaaagagt tgaagattgg catttgcgct
     1921 acgtatttgt ctaaaacgga acaaaaacca caaaatactg ctattattat tgaccgaaaa
     1981 ggagaaataa ttttagacta tgccaaagtc catacgtgtg atttttcttt agaaatatta
     2041 ctacaaagtg gcgaggaatt taaagtttgt gagtttgatg gtattaagct ggggggcatg
     2101 atttgctatg accgcgagtt tccagaaagt gccagagttc tcatgttaaa aggggcagaa
     2161 attatcctcg ttccaaatgc ttgtgatatg aatccagcca gacttaatca actaaattct
     2221 cgtgcttttg aaaacatggt tggcgtagcg atggcaaact atcctggcga aaaatggggc
     2281 agatccactg ctttttcccc gattgttttt gatgaaaatg gggattaccg cgataatacg
     2341 attattgaaa cagacgacgt ttcagaaggt atttttattg ctgaatttaa tttagacgag
     2401 attcgaactt accgggaaaa tgaaacgtgg ggaaatgcct accgaaaacc gcaaacatat
     2461 acagatttaa taagtttaga tgtagaagcg ccatttaaac gaaattaaaa aaacagagat
     2521 gagcgattct ctgttttttc ttttaaaaat aataaagccc ggtaacaatc agcgcaacga
     2581 ctaaaatccc cggaacaagg ttcgcgaccc gaatcttggt taaaccaagc aagtttagac
     2641 caattgccaa aatcataatc ccgcctgtag ccgttaattc ctttataatt agtgccatca
     2701 ggtctgccgg aacgaattga ttaatctggg ttgcgaataa cgcgataatg ccttcaaaga
     2761 gaaacactgg aatcgcagaa agcataacgc cccaaccaag tgtcgtacta agaagtaggg
     2821 cgataaatcc atccatcacc gatttcgtat aaagtacatc atgattgccg cgaatgccgc
     2881 tatcaagcgc accaataatc cccatcgcac caatcacaaa aataagtgta gctgtcacaa
     2941 agccttttga aacattactt tttcccttgg caccgacttt acgttcaatc cagtgcccga
     3001 gctgattcag gtgataatct atattaagcc attccccaat aacggctcca aaacaaatac
     3061 ttaaaatgac aataagcgag ttgctcgttt taaatgccat ttgaatgcca aggacgataa
     3121 cggataaacc catccctttc atgaccgtgt ctttcatacg ttcagggata ttatgtaatt
     3181 tcatgccaat aacagagcca atcaaaatcc caagcccatt cactagcgca ccaagtagaa
     3241 ccattttctt cctccctttt tttacatata gcaatagtat acaggaagtt ttcgccaatt
     3301 gggagtttta ttttgtacaa aaaagtcgaa ggatcaaagt gatccttcga ctttaagtct
     3361 attttccggc tactgtaaag cgttcattta agtgattagg tcgttcaatt tcatctaaaa
     3421 cagcaattgc atagtcttcc atactgataa aactattacc atcgctacca aataagagat
     3481 gatcttttcc tatttgatag tctccagtgc gttcgccggg ctcaaacatg gcagaagggc
     3541 taatgtaagt ccaactgaat tctgcttgat gtgattttaa atgctctaat tgtttcgctt
     3601 gcgcacgtgc agttggatag taaggcgctt cccgtaggcc cttggactct aaaagcgtgt
     3661 ttccgtcttc atcaatttgc agactagctg ctccgccaac gacaagtaag cgcggagaca
     3721 cagttccatt taaaacagaa attaagtgat caagggaagt gacatgtttt tctgcttcgt
     3781 ctggactgat gccataagca tcaacaacga cattttggtc tgataaatct gaaagagtta
     3841 aatcaaaaat atctttttgt aaaatattaa tatctttgtg tgtttgcgtg attttcccgg
     3901 cgtttctaac aatggctgtt acttcgtgac cgcgattttt tgcttcttct aaaattctcg
     3961 aaccagctcg gcccgtagca ccaatgatac caattttcat gaaaaaagcc ccctattcat
     4021 ttttatggaa tagattctcg tttgatagaa gaattattcc cgaaagaggg gactgggaaa
     4081 catttatttt tttgcggcgt ttgctaattg tttaattttg gctgcggaat aaatgtgaga
     4141 aatcgtgaaa ataatcagtg ctaaccaaat aaacatgaat gcaaacaatt gaatatgatc
     4201 gaaactttct ttaaatagta atacgccgag tgcgagcatt aatgttggtc cgatatattg
     4261 caggaagcca accattgtat agctaatttt tttcgcagca gtggcaaaca gaaggagtgg
     4321 tatagctgta acgacaccag cgccaactaa aataatattg gtttgtgccg cgtactgcat
     4381 taatccattg gtcgcgaaaa agattacata aataagcgcg aatggcgtaa taatcattgt
     4441 ctcaagggtt aaaccagtcc aaacagatac ggaaacgact tttttaatta gcccataaag
     4501 cgagaaagta accgccatac cgattgccgc ccaaggaaca gatccaagat gccatgtgag
     4561 gattaaaaca ccgatagtag cagaaataac agcaataatt tcgccacgac tcaagcgctc
     4621 ttttaagata actgttgcga gaagtacgtt tacaagtgga ttgatgtaat aaccaagact
     4681 tgcttcggtc acatgcccac tattcaccgt ataaatgaat aaataccagt ttgctgtcac
     4741 taaaaaagct gccgcaataa tcgcaatcag cgtttttggt ttaagcaata cgtccttagt
     4801 ttcttgaaaa accatcgaag cttttcgcaa acaaacgatc aaaaataaca taaaaataaa
     4861 agaccatata attctatagg ccaaaatctc cattggtggg acatttgtga ctagcttcca
     4921 gtaaatcgga aggacacccc aacatacata agcgagagcg ccagcgatga ttccgcctag
     4981 ctgtccattt tgtttatttt ccatagcgat gttagccccc tttttttaaa caatagaact
     5041 attttagctt aaaaggggga ataaagctac aaaaaaaact acgaataggc tagctattcg
     5101 tagtttctac aattatttgc ttgcttcgat ttggatgttt aatttcactt cgtcgccaat
     5161 aagtacgcca ccagtttcta acgcagcatt gtaattaagg ccaaagtctt tgcggttgaa
     5221 tttacctttt gcttcaaagc cagctaccat gttgccagta tttggatctt ttcctgttcc
     5281 ttcgtagctt acttctagtg taagaggttt ggttacgtcg cgaatagtta agtcaccagt
     5341 cacttcgtat tcatcatcgc cgtcagctgt aatttttgtt gccgaaaaag tcacgtttgg
     5401 atatttttct acattaaaga agtcttcgct tttcaaatgt ccatcacgtt gcgcttgacg
     5461 agtgtcaaca gaagcggctg caacgtagaa gtttaatttt gcagaagtta aatcttctgg
     5521 atccatttcg atatccgctg tgaaatcgct aaatgcacct tttacttttg ataccatcat
     5581 gtgttttact tgaaattcga ttgaactatg cgctgggtct acgttccatt tttctactgt
     5641 cattgtttca ttcctccaaa tatgtttttt tataaaagca ttctctttta atctagccta
     5701 aatcctaaga aattaaacct gagaaaaaat acttttacgc cttagaaaa
//
LOCUS       DASDXX010000164         5718 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.164, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000164 DASDXX010000000
VERSION     DASDXX010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5718
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.164"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1118)
                     /locus_tag="U0280_002339"
     CDS             complement(<1..1118)
                     /locus_tag="U0280_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEM2272263.1"
                     /translation="MGLNIPPKPESSLWTDDQWKAIQAEGNNVLVAAAAGSGKTAVLV
                     TRIIEKLINESANLNVDELLIVTFTNASAAEMKFRIGKGLEEALAQNPDSTHLKRQVA
                     LLNYASISTLHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIE
                     NNEPFFHLVESFTGDRSDAELHALISKLYDFSRANPDPNIWLEEMVDFYNTEETTSIT
                     ELPYFPIIKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSW
                     NSWGQLKKAIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREE
                     INYLSDLEKMKPDIKTLSRLVKKFAENFFEEKQQRGVL"
     gene            complement(1120..4593)
                     /gene="addB"
                     /locus_tag="U0280_002340"
     CDS             complement(1120..4593)
                     /gene="addB"
                     /locus_tag="U0280_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddB"
                     /protein_id="HEM2272264.1"
                     /translation="MTLQIIAGRSGTGKTTYLMDEVSVKIKQNSKTYIFIVPDQMTFQ
                     METSFLNKENLEGMLGTQIFSFSRLAWKILQETGGLSKTFLSQTGIEMVIRKAALDQR
                     DKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVKSATNLSTSVNNKIHDISIIY
                     QKYEELLADKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIGALMRK
                     CDKVTVSLALNVPEIKHGLDEYSMFKASTEAYYALLELAKLNGINVEEDKFFLENKRA
                     KTESLAFLANAWGHNKFMAFKEEPHNLSVHQANNRRAEIEGVAREIRQLTLNGYRYQD
                     MAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEP
                     IFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST
                     NVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVE
                     RLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEETLDLNSFVEIIATGLD
                     ALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQKDNGILSDQDRDAL
                     RAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKG
                     QFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYN
                     SYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQH
                     FAQYGLKLEERGHFQLQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLA
                     MTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLK
                     GDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYYGLA
                     LQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSKM
                     KGLILSDPVAVSLMDTTLEKGKSSNIVPAEIKQNGELSARSKTATREEFDKMRHFVRH
                     KYQEAGNKILDGAVSINPYKLKERTPCQFCGFRSFCGFDPSLASNQYRHLTNEKTETI
                     LAKMDIEGGGQ"
     gene            complement(4743..5099)
                     /locus_tag="U0280_002341"
     CDS             complement(4743..5099)
                     /locus_tag="U0280_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465793.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IDEAL domain-containing protein"
                     /protein_id="HEM2272265.1"
                     /translation="MVICKSLDFGKVVFSSCFLFFLSILQFFKIVINMSEGVVVVEMR
                     DFSNSLMNQVGVLKGEKELTNVFIECFLTMLLEERKLEQLRAEIDKALDNRNKAEFMK
                     LTEKMNKIQQEMLAFD"
     gene            5230..>5718
                     /locus_tag="U0280_002342"
     CDS             5230..>5718
                     /locus_tag="U0280_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HEM2272266.1"
                     /translation="MKKEQISTQFYEVNPHTMIIFPKKSGSIVYSEIYEVDSHYTSKF
                     TPFELIKTSCNFFGSSYEGRKEGTKHLIGVTHKPPIIIDPVTSTYVFPTVAPSSTECI
                     WIFPQHIKDYHAIGFNHTLITFSNMETFEIDMSLASFNNQIARTSMLHMKFSQKMRIM
                     ESN"
BASE COUNT         1715 a         1131 c          797 g         2075 t
ORIGIN      
        1 tccaatactc ctctttgctg tttttcttca aagaaatttt cagcaaattt tttcactaat
       61 ctactcaagg ttttgatgtc tggtttcatt ttttctaagt cagataaata atttatttct
      121 tctcgtgaaa accaatcagt tgcgatattt ttaatttctt tttttgctgc atctcgaaat
      181 ttctttgctt cctctacata ttcttcatcg taatcacttt tattttttag tgttggaata
      241 cgcttaaaat caatactttc aatagccttt ttcagctgtc cccagctatt ccagctcaat
      301 tctgttattg cttcaatttg agctaaatca ttttctaacg tagctaaata aggtacaggt
      361 ccattatttt catttgcata atctatcgca tttaataaat aatttttagc ttgattaact
      421 cttaattcaa tatcttcttt aataattgga aaataaggta attctgtaat cgaagtagtc
      481 tcttctgtat tataaaagtc caccatttct tctaaccata tattcggatc tggatttgct
      541 cttgagaaat catatagctt agatattaac gcgtgaagct cagcatccga cctatctcca
      601 gtaaaagact ctaccaagtg aaaaaacggc tcattgtttt caatactgta ttcttgttca
      661 agcaaatttt ctagaacctc atcacgaatc atactacttt cgattggctc aattaagcga
      721 aaatttggat caatatctgc atcaaaataa tattttctaa taatttctaa gcaaaaagag
      781 tggagagtgg aaatagaagc atagttaagt aaagccactt gcctttttaa atgggtagaa
      841 tctggatttt gagctagagc ttcttccaag cctttcccaa ttctaaactt catttcagca
      901 gcagatgcat tagtaaaagt tacgattagc aactcgtcaa catttaagtt cgctgactca
      961 tttattaact tctcaataat tctggttact aatacagctg tcttccctga accagcagca
     1021 gcagctacaa gcacattgtt cccttcagct tggatagctt tccactggtc atctgtccat
     1081 aaagaacttt ctggttttgg cggtatattt aatcccatgc tactgtcccc ccccttcgat
     1141 atccattttt gctaaaattg tttctgtttt ttcattggtt aaatgtctat attgattgct
     1201 tgctagagat ggatcaaatc cacaaaatga acgaaaacca caaaattggc aaggtgttct
     1261 ttcttttagt ttatatgggt taatggaaac tgctccatca agtattttgt tcccagcttc
     1321 ttggtattta tgacgtacaa agtgacgcat tttatcaaat tcttctcttg tcgcagtttt
     1381 tgacctcgca cttaattcac cattttgttt tatttctgct ggaacaatat tagatgattt
     1441 acctttttca agtgtcgtat ccatcaatga tacagccaca ggatcagata aaattaatcc
     1501 tttcatttta gaattttttt gtaattcttt tgcgatagcc tcatcactta actctttctc
     1561 cgcttgtaca tattgattat gcatatggaa atatagtact ccagctggtt ctgccgtttt
     1621 gccaatcatt ttttgtgcat ttgtaactac aatatccaaa tacgtcagca tttgaagcgc
     1681 taagccataa taaacttccg taagagccaa atcatgtgaa ctcgatttat aatctataat
     1741 gcgtaggaat gtccgatctt cttgttctgc catatcaatc ctatcaattc gaccttgtaa
     1801 aagaagttca ctattcgctt ggagcgaaat ttttaatggc ggaatgtctc cttttaagcc
     1861 aaaatcaact tctaagccga ctggacgaaa tgcactactt tttgcttgtt catttagtac
     1921 tgtcgttgcc ctcgttatga tttgaagcaa tttatactga atatattcca ttcttttgga
     1981 gctaagtagt atctcatgct gaattttagg cgctaggaaa gtcattgcta atttcgccat
     2041 ttgtctacat tcttggtctg ttaaactgcc ccaatccaga ttatttcttt ttaattctgc
     2101 tgaaatccat tccattgctc catggaaaat ttcacccata tctacagctt gtagctgaaa
     2161 atgacctcgt tcttctaatt ttaaaccata ttgagcaaaa tgttgaaatt cgcaactgaa
     2221 aaatttctcc attctcgaga cactcgcatg gattgtttct ccaaataagt ttttggcagt
     2281 tttttcttgt agtggttttg ttttattttc gtaatacaaa ctagataaca cttgtttagc
     2341 cattctagat tcttttccat tttcaaaata actattatag gcatcccacc atacactaga
     2401 tagtggataa cctcgtttgt acatttgtaa ttgactcgtc aacaaaccta atgttgcttg
     2461 cttagaacga atataactac tttgttccgc atcacttaat aaacctgggt ctgttaaata
     2521 aaccgattcg cttaattttt taaattggcc ttttattttc cttaaataat tggattcact
     2581 tagcacttta ccttcttcat ccgcagcagg gtaactaaga aatagtttat cactaggcaa
     2641 acttattatt ttatacgcca ataaatcttc ttctccaata ttatttttag cagatggctt
     2701 caaattacta acctcagcac gcaaggcatc cctatcttga tccgaaagaa tcccgttatc
     2761 cttttggcga agcggcataa caccatcgtt cattccaatt gcaaaaatca ctttcatatc
     2821 tagtaatttc gcattctcca tatcagataa aactacttga tctaaggaag gtggcaaaag
     2881 tgaaaattca agggcatcta gcccagtggc aataatttct acaaaactat ttaagtctaa
     2941 agtttcttca cctaaaactt ctacaaattc atccaaaagc gccgaaatag cgctccatgc
     3001 ttgctcgtgc tcacgtgcaa gttctagata accctgctcc tctgctcttt gtctccatga
     3061 ttccaatcgt tctacagcat ttacttgttc taaaaaatga taaagagcta aagcaaattc
     3121 catccctgtt tttgctttct ttagatttaa ctctaaagtt gaaagtgggt ttactataag
     3181 acttctcatt tcgttaataa ttgattgcgt ttgaatttct tcatctgttt gaggtaacac
     3241 attagttgat agcccacgaa tcttccgata aatccaatcg ccttcttttt cccatttcca
     3301 tttattttga atgccatttt ctaatacata gttctctaga atatccgctt tacgtctaag
     3361 aacacttgat ttttcggcaa caccaaagaa aaactctgtc ttaactgctt gaaagattgg
     3421 ttcatacttc caattaaaca aaatagcatc taagctagaa cggataaact caataaatgg
     3481 gtgtttcgac atagctcttt ttttatcaat aaagatggga atattatatg actccatcac
     3541 tgtttcacat aaaacgtcat aatctccgag atttcttgtc aaaatagcca tatcttgata
     3601 tctgtatcca tttaatgtga gttgacgaat ttcacgagca accccttcta tttcagcacg
     3661 tctgttgttc gcttgatgaa cacttaagtt atgaggttct tctttaaaag ccataaattt
     3721 attgtgaccc caagcatttg ctaaaaatgc taatgattct gtttttgccc gtttattctc
     3781 taagaaaaac ttatcttctt ctacattaat accatttaat tttgccagct ctaataaagc
     3841 atagtaagcc tccgtacttg ctttaaacat gctgtattca tctaatccat gcttgatttc
     3901 gggcacattt aaagctaaag aaactgttac tttatcacat tttcgcatta atgcaccaat
     3961 gactgtcagc tcttgttgcg agaaagaagt aaagccatca atgactattt ccgtctgatt
     4021 taaataatca ctttctgtaa ttttttccgc aagtaatctc aagtaatctt cattttcgag
     4081 gaatttatct gccaataatt cttcatactt ttgatagatt attgatatat cgtggatttt
     4141 attgttcaca cttgtagaca ggttagtagc gcttttcacc atatcttcta tagaaacttc
     4201 ttcttgtttc atttctttaa ataaattcgc taactctgca tagaaacctt ttctagacgt
     4261 agctctagaa aagattttta gtttgtctct ttgatcgagt gcagcttttc taataaccat
     4321 ttcgattcca gtttgactca gaaaagtttt agataaccca cccgtttctt gaagtatttt
     4381 ccatgctaaa cgactaaaac taaatatttg agtcccgagc attccttcta aattttcttt
     4441 gtttaaaaag cttgtctcca tttgaaacgt catttgatcc ggaacaataa agatgtatgt
     4501 cttagaattt tgtttaattt ttacgctaac ttcgtccatt aaataagttg ttttacctgt
     4561 gcctgatcta cctgcaatta tttgaagtgt cataccctca ccaccgaaca tatgttttta
     4621 tttagtttac catatttgag caatctgtcc agaacttttt tcgaagcatt ttttgcttga
     4681 aaatttataa aacagctcaa aaaaactaag atagctctta ctatcttagt ttttcatata
     4741 ttctagtcaa aagctagcat ttcctgttga attttattca ttttttctgt aagtttcata
     4801 aattccgctt tgttcctatt atcgagagct ttatcaattt cagctctaag ttgttctaat
     4861 tttctctctt ctaggagcat cgtcaggaag cattcgataa aaacgtttgt taattctttt
     4921 tcacccttaa ggacacccac ctgattcatc aacgaattag aaaaatcacg catttccacg
     4981 actaccactc cttcactcat atttattaca attttgaaaa attgtaatat actaagaaaa
     5041 aacagaaaac agcttgaaaa tacaacttta ccaaaatcta atgacttgca aattaccatg
     5101 tgctataatg acaaaaaata actcataact aactttgatg cttagtcgtt acttagaagt
     5161 tttgcttatt aggcaataac tctaggtttc ttcttagaca taaatacaaa catagaggag
     5221 ttgaatgaaa tgaaaaaaga acaaatcagt actcagtttt atgaagtaaa cccgcacaca
     5281 atgattattt ttccaaaaaa atctggaagt atagtctatt cagaaattta tgaagttgat
     5341 tcccattata cttctaaatt taccccgttt gaactaatta aaaccagctg taactttttc
     5401 ggatcaagct atgagggacg caaagaggga actaaacact taattggtgt tacccataag
     5461 ccacccatta tcattgaccc agtcacttct acttatgtat ttccaactgt agcacctagt
     5521 tcaacagaat gtatttggat tttcccacaa catattaaag attatcatgc aattggattt
     5581 aaccacactt taataacatt ttctaatatg gaaacctttg agattgatat gtctttagca
     5641 tcttttaata atcagattgc tagaacctcc atgttacata tgaaattttc tcaaaaaatg
     5701 cgtataatgg agagtaat
//
LOCUS       DASDXX010000165         5663 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.165, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000165 DASDXX010000000
VERSION     DASDXX010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5663
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.165"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..737
                     /locus_tag="U0280_002343"
     CDS             <1..737
                     /locus_tag="U0280_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HEM2272267.1"
                     /translation="FSAMIAAFLLAIIQLIMVFRDEDIGAKTEHMGHTHDGENTILKK
                     IMVYGLLSYALIAGFLFPVATLDSTIVSAKGFHFPKNNAAGDDPYAQNQFLRPDTSGY
                     FGETDYEKMMAKEKAEIIDQNPIKVNDSNYLMTMEILYNYPGEFTGKQIEFTGFVYND
                     EVTQDNNLFLFRFGIIHCVADSGVFGMLVQMPEKTDLKNDTWLTVKGTITQEYYSPFK
                     MNIPSVQVESYKEVAKPKSVYVYRKY"
     gene            826..1746
                     /locus_tag="U0280_002344"
     CDS             826..1746
                     /locus_tag="U0280_002344"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HEM2272268.1"
                     /translation="MNDYNHYFHFPREEWRKLEVSKDQILTAEELEEIRGLNDRISLQ
                     DISEIYLPLIKLIAIQYHEAIFIHGEKMEYLKKKESRAPFIIALAGSVAVGKSTTARV
                     FKLMLDRWFSKTRQVELVTTDGFLYPNKVLEERGIMDKKGFPESYDRDRFAKFLTDLK
                     ANKEDVEIPLYSHFTYDVLDETRVIHNPDIVIIEGINVLQADQHESLFPSDFFDFSVY
                     MDANEADIKKWYLERFFMLRETAFQDESSYFHPYTKISKQEAETFALGVWDTINGVNL
                     KENIEKTKYRADLVLQKGTDHLISDIYLRK"
     gene            1862..2584
                     /locus_tag="U0280_002345"
     CDS             1862..2584
                     /locus_tag="U0280_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272269.1"
                     /translation="MSEIAIKVSNLDVKIGKKQILTNMTLEIEKGEIFGLIGPSGAGK
                     TTLVKTIIGMEKATNGTTEVLGKAMPNLPVISKIGYMAQSDALYTDLTAKENLDFFAS
                     LYSIKGAAKKDRMNYAATLVNLQQDLTKKVNNYSGGMKRRLSLAISVLADPDVLILDE
                     PTVGIDPELRKTIWAELGDLKANGKCILVTTHVMDEAEKCDRLAMIRNGQIIAVGTPQ
                     ELSSKTSSGKLEDAFLEFGGKH"
     gene            2584..3699
                     /locus_tag="U0280_002346"
     CDS             2584..3699
                     /locus_tag="U0280_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272270.1"
                     /translation="MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTV
                     KPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAKIKDANLDAFFKQNGEKLEVTYE
                     NSEPSLSKEIGLKLQKAMMTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLS
                     ISTNYVYGDKGTTFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKR
                     IELELGYLIGFGIFALLQSILVAVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGIL
                     LSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHIMPLYYGANALTSIM
                     VKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV"
     gene            3722..4378
                     /locus_tag="U0280_002347"
     CDS             3722..4378
                     /locus_tag="U0280_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2272271.1"
                     /translation="MDAEGDIIRQMLDLTEKETKMSEKQRRIVAASIELFAEKGYAGT
                     STNEIAKKAGVAEGTIFRHYKTKKDLLMAITMPTLIGGVIPFLAQSFVKEVFESEYPD
                     FQSFIREIIVNRFDFAKENGKVIKIYFMELFYHDELRIQFSEIFMTHVKGQFDQMIDY
                     YKERGEIVDMPNSTIMRALITNIVGFMLTRFVVMPDVEWDDAKEIDDTVAYIMRGLGK
                     "
     gene            complement(4410..>5663)
                     /gene="ltaS"
                     /locus_tag="U0280_002348"
     CDS             complement(4410..>5663)
                     /gene="ltaS"
                     /locus_tag="U0280_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid synthase LtaS"
                     /protein_id="HEM2272272.1"
                     /translation="TKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVT
                     PFINSFFKDQNTLSFTNFFHQTGQGKTADSEMLLENSLYGLPQGSAFTTKGQNTYESA
                     SAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKP
                     FFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYL
                     DESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRV
                     PLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRN
                     GDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYA
                     PDGFKKVDPSKYNYNKKKSTDSSDK"
BASE COUNT         1823 a         1020 c         1127 g         1693 t
ORIGIN      
        1 ctttttctgc gatgatagcc gcatttctac ttgcgattat tcagctcatt atggtgtttc
       61 gcgatgaaga tattggtgca aaaacagaac atatggggca cacccatgat ggcgaaaata
      121 ccattttgaa aaaaattatg gtgtatggtt tactttctta cgccttgatt gcaggttttc
      181 ttttccccgt cgcaacactt gattcgacca ttgtttcggc aaagggattt catttcccaa
      241 aaaacaatgc agctggtgat gacccatacg ctcaaaatca atttttaaga ccagatacga
      301 gtggctattt tggggaaacc gattatgaaa aaatgatggc gaaagaaaaa gcggaaatca
      361 tcgatcaaaa tccaatcaaa gtcaatgata gtaattactt aatgacgatg gaaattcttt
      421 ataattatcc aggggagttt actgggaaac aaatcgaatt taccggtttt gtttataatg
      481 atgaagtcac ccaagataat aacttgtttt tgttccgttt tggaataatt cactgtgttg
      541 ccgattctgg tgtgtttgga atgcttgttc aaatgcccga aaaaaccgat ttgaaaaacg
      601 atacatggct tacagtaaaa ggaaccatca cccaagaata ttattctccg ttcaaaatga
      661 acatcccgtc tgtacaagta gaaagctata aagaagtagc aaaaccaaaa tcagtttatg
      721 tttatcgtaa atattaaatc gctacttgcg gatttatgca gcttgcgtta tccttaaata
      781 aagctgttta cgttttcacg aatgaattaa aggatggaac attgaatgaa tgattacaac
      841 cactactttc atttcccacg agaagaatgg cgcaagctgg aagtgagtaa ggaccaaatt
      901 ttaactgcag aggaactgga agaaatacgt ggtttaaatg accgaatttc tttacaagac
      961 atctctgaaa tctatttacc actaataaaa ctaattgcga ttcaatacca tgaagcgatt
     1021 tttattcatg gcgaaaaaat ggaatactta aagaaaaaag aatcgcgtgc accatttatt
     1081 attgcattag caggaagtgt ggctgttggg aaaagtacga cagcgcgtgt tttcaaatta
     1141 atgcttgatc gctggttctc caaaaccaga caagtagagc ttgtgacgac agacggcttt
     1201 ctttatccta acaaagtttt agaagagcgc ggtatcatgg acaaaaaagg cttccctgaa
     1261 agctacgacc gcgaccgttt tgccaagttt ttaaccgact taaaagcaaa taaagaagat
     1321 gtcgaaattc cactttattc gcatttcact tatgatgttt tagacgaaac ccgtgtgatc
     1381 cataatccag atatcgtcat cattgaagga atcaatgttc ttcaagcaga tcaacatgag
     1441 agcctgtttc caagtgactt ctttgatttc tccgtttaca tggatgccaa tgaagcggat
     1501 attaagaaat ggtatttaga acgtttcttc atgcttcgcg aaacagcttt ccaagatgaa
     1561 agttcttatt tccacccata tactaaaatt agcaaacaag aagcagaaac atttgcactc
     1621 ggggtttggg atacaatcaa cggcgtcaac ttaaaagaaa acattgagaa aacaaaatat
     1681 cgagccgact tagtgcttca aaaaggcaca gatcatctca tttcagacat ttatttacgc
     1741 aaataaccga atgcagatag aaggaaactt cttgatgcat tcggtttttt ctttacattg
     1801 gagaaaatcc gagtacaata gaaagtgagt aatcactcat ttgaaaaagg gagggaaagc
     1861 aatgtcagaa atagcgatta aagtttctaa tttagatgtg aaaattggaa agaaacaaat
     1921 cttaaccaat atgactctcg aaatagaaaa gggcgagata tttggcttaa tagggccatc
     1981 cggtgcagga aaaacaacac tcgtgaaaac catcatcgga atggaaaagg caacgaatgg
     2041 cacaactgag gttttaggaa aagcaatgcc aaatttacca gtcattagca aaattggtta
     2101 catggcccaa tcagacgcac tttatacgga tttaacagcc aaagaaaact tggatttttt
     2161 cgcttcacta tattccatca aaggtgcagc caaaaaagac cgaatgaatt atgcagccac
     2221 tttagttaat ttacaacaag atttaactaa aaaggtgaac aattattcag gagggatgaa
     2281 acgcaggctg tctctggcca tttctgtcct tgctgaccca gatgtcctaa ttttagatga
     2341 gccaacagtc ggtattgatc cagaactaag aaaaacgatt tgggcagagc taggcgatct
     2401 aaaagcgaac ggtaaatgta tccttgtgac gacacacgtg atggatgaag ccgaaaaatg
     2461 tgatagactt gccatgatca gaaatgggca aataatcgct gtagggaccc cacaagagct
     2521 ctcaagtaaa acgtcatctg gtaagctaga agatgccttt ttagagtttg gagggaagca
     2581 ctaatgcgaa tatttgccat tgtcaaacgc atcattaacc aatttcgccg tgataaacgg
     2641 acgcttgccc taatgtttct tgcgccactt ttacttatca cactgctcac ttatttattc
     2701 gaaggtgaca cagtgaagcc agttgttggt gtaagcgggc tttctgactc catggtaaaa
     2761 gaactgaaag caaatgattt aaccatcaaa acttactcgg aaaataccga tgtaaccgct
     2821 aaaattaaag atgccaacct cgacgctttt tttaaacaaa acggtgaaaa actcgaagtc
     2881 acctatgaaa atagtgaacc aagcttgagt aaggaaatcg gattaaaact acaaaaagca
     2941 atgatgacgg agcaacaggc acaagtgaaa aagcaagcga aagcaaccgg tgagtcactt
     3001 gctaaagctg gtattgatcc aaacaccatt ccttcactta cacaaagccc agaaaagctc
     3061 agcatctcaa caaactacgt atacggagat aaaggtacta cctttttcga cacaatcagc
     3121 ccgattttca ttggcttttt cgtattcttt ttcgtatttc tgattgccgg tatttctttc
     3181 ttgagagaac gaacaacagg cacgcttgaa agacttatgg caaccccaat taaacgtatc
     3241 gaacttgaat tagggtattt aataggtttt ggtattttcg cgttactaca gtctatctta
     3301 gtcgcagttt tctccatcca agtacttggc atgatgcaaa acggctcctt attctatgtg
     3361 ttacttatta cattaacact cggcatggtt tctctagcgc taggaatttt actttctact
     3421 ttcgcaaata atgaatttca aatcgttcaa tttattccta tcgttattgt gccacaagtc
     3481 ttattttgtg ggattttccc gctcgatggc atggcagatt ggctcgtgtg gattgcccat
     3541 attatgccgc tttactacgg cgcaaatgca ctaacatcca ttatggtaaa aggagaagga
     3601 ttcgcttcgt ttgcaactga tttctacatt ttactaggat ttgtgctcgt atttgttata
     3661 ttaaatattt ttgctttgaa aaaataccgc aaagtttaaa tgaaacagga ggagataaga
     3721 cgtggatgca gaaggagaca ttatccgtca aatgcttgat ttaacggaaa aagaaacaaa
     3781 gatgagtgaa aagcagcgcc gaattgtcgc tgcttccatc gaactgtttg cagaaaaagg
     3841 ctatgccgga acttcaacga atgaaattgc taaaaaagct ggggtcgcag aaggcaccat
     3901 ttttagacac tataaaacga aaaaagattt actaatggcg attaccatgc caacgcttat
     3961 cggtggtgtg ataccatttt tggcacaaag ctttgtcaaa gaagtgtttg aaagtgagta
     4021 tccagatttt cagtcattca ttcgggaaat catcgttaat cgctttgatt ttgccaaaga
     4081 gaatggtaag gtcatcaaaa tttactttat ggaactgttt tatcacgatg agttaagaat
     4141 acagttttca gaaattttta tgacacatgt caaagggcaa tttgatcaaa tgattgatta
     4201 ttataaagag cgcggggaaa ttgttgatat gccgaacagc acgattatgc gcgctcttat
     4261 cacgaatatt gtcggattta tgctaacaag gtttgtcgtg atgcccgacg tggagtggga
     4321 tgatgccaaa gaaattgatg atacggtggc gtatattatg agaggtttag gtaagtaaaa
     4381 aagagtccag atattctgga ctctttttct catttatcgg atgaatcagt tgattttttc
     4441 ttattgtaat tgtatttact tggatccact tttttgaaac catcaggagc atagaaacgt
     4501 aacaagtcac cttgtagtac agaatctgaa agctctaatt cttttgctac tttttctttt
     4561 gtttctttca tttcttttgt ttccgtagca attggttccc cagtttgttg attatacatg
     4621 ttaccaccaa tcattgaata ggtaggagtt atataatcac catttcggaa tggaacaagt
     4681 tgtttatggt ctttagaaag taaatctgta ccaaattgta agtactcttt attatcaaca
     4741 ccaagtaagt gaagtaatgt cggaagtaag tcaacttgac caccgtattg ttcttgaacg
     4801 ccaccttgaa caccaggaac gtgaatcatt aaaggaacac gctgcgcttg ggcattttca
     4861 aaagtgttgt aatctttacc aagaattttt gtcattgctt cttcatggtt gtcggaaata
     4921 ccataatggt caccgtacat gataatgaca gagttatcgt aaagaccaga tttcttcaag
     4981 taatcaacaa agctcttcac agattcgtct aaataacgag ctgtttggaa atacgtatct
     5041 acagatgaat cgcctgttgt tgccggagca atcgaagcat ctttctcatc aattggataa
     5101 gggaagtggt tcgtaagcgt aataaatttc gtgtagaacg gttgttgtaa tgacgataga
     5161 tattcttcgg attccttaaa gaatggttta tctttaagtc cgtagttaga aacatctgct
     5221 tcgttcatat cgtagtaact agcatcaaag aaattatcgt aaccaaattg tttataaatt
     5281 tcatcacgat tccagaagct cttatagtta ccgtggaata cagcacttgt atagccttgt
     5341 tggcctaaaa tagcagatgc agattcataa gtgttttgcc ctttagttgt aaaggcagaa
     5401 ccttgaggca agccgtaaag cgagttctca agtaacattt cggagtcagc tgttttacct
     5461 tgacctgttt ggtggaagaa gtttgtaaag cttagtgtat tttggtcttt aaagaaagag
     5521 ttaataaacg gcgttacttc ttctccattt aatttgtaat ttactaggaa ttgttggaaa
     5581 ctctctaaat ggatataaat gacgtttttg ccttttgctt taccaaaata ttccggattt
     5641 ggcgcggcat atttggattt ggt
//
LOCUS       DASDXX010000166         5532 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.166, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000166 DASDXX010000000
VERSION     DASDXX010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5532
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.166"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            126..899
                     /locus_tag="U0280_002349"
     CDS             126..899
                     /locus_tag="U0280_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2272273.1"
                     /translation="MKKYVVITGASSGIGYATAKGFAKRKNNLILIARREANLLKLKN
                     EIEKEVPEIEVLIKAIDLTKIDRLEKLFSELDPYFIETWINNAGLGYYSEVKNQSLTK
                     TLQLLHLNIEALTVLSVLYVRKYHDQSGTQLINVSSAGGYTMVPAAATYCASKFYVSS
                     FTEALSLELRESCSPLQAKVLAPAATKTEFGQKANDVSDYDYDKKFNNYHTSDEMAQF
                     LLDLYDSDKIVGMIDRKAFSFTLTENLFSYANQASSNQK"
     gene            complement(962..2035)
                     /locus_tag="U0280_002350"
     CDS             complement(962..2035)
                     /locus_tag="U0280_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2272274.1"
                     /translation="MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGD
                     YIDPSLITKFEKETGIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENL
                     LIPLDHSKLPNEKYLDPRFMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFDTWNA
                     LFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVG
                     DEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVD
                     GAHKFINFMLKPENAAINAEYVGYATPNEKAVKLLPKEISSDERFYPDMDELNNLEVY
                     DNLGKRMLSYYNELFLEFKMYRK"
     gene            complement(2032..2838)
                     /locus_tag="U0280_002351"
     CDS             complement(2032..2838)
                     /locus_tag="U0280_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272275.1"
                     /translation="MKKSKWGTIYLVLVFVILYAPIFYLIFYSFNKGGTMHNFSGFTL
                     GYYKEVFQDTRLLIIVLNTFVIALLSSVIATIIGVCGALAIKFMPKPFAKNSLLSLNN
                     VLIVSPDVIIGASFLIFFTILGVKLGFISVLVSHIAFSIPIVVLMILPKLQEMSPTLM
                     DAARDLGASQWQVLSKVILPYIMPGVLAGFFMALTYSLDDFAVTFFVTGNGFSTLAVE
                     IYSRARQGISLSINALSTLIFLFTIILVIGYYFINQRNTSKNIRTGATKE"
     gene            complement(2835..3644)
                     /locus_tag="U0280_002352"
     CDS             complement(2835..3644)
                     /locus_tag="U0280_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272276.1"
                     /translation="MNRRTRTVYLVPYVLWILLFVVAPILLIVYYSFFDVDGNFTVDN
                     YIHFFTPVYLKMTASSFWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWIN
                     LLLKAYAFIGIFGTYGAANQFLEIIGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNA
                     IEEINPTLIQASRDLGASSLTTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAG
                     NRVITLGTAIEEHFLVTQDWGMGSTIGVFLIIAMILIMFLTGSKKKRGARK"
     gene            complement(3644..4738)
                     /locus_tag="U0280_002353"
     CDS             complement(3644..4738)
                     /locus_tag="U0280_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272277.1"
                     /translation="MTETIIRFENVTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCG
                     KTTILRLIAGFLEASEGQIYLGDKVINQIPANKRPVNTVFQDYALFPHLNVYENVAFG
                     LRIKKLKKDAIDEKVKEALRFVNLKGYEKREISEMSGGQRQRVAIARAIVNEPEVILL
                     DEPLSALDLKLRTEMQYELRDLQKRLGITFIFVTHDQEEALAMSDEIFVLNKGEIQQS
                     GTPIDIYDEPINKFVADFIGESNIVNGKMIQDFEVEFVERRFECVDQGFRPNEVVEVV
                     IRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGCIDTDGNEWLVHTTRKVRVGDKIGL
                     AFEPEAIHVMRLGETEEEFDKRLDSYDEVQ"
     gene            complement(4754..5296)
                     /locus_tag="U0280_002354"
     CDS             complement(4754..5296)
                     /locus_tag="U0280_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272278.1"
                     /translation="MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSI
                     ETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWLVPESNEKEM
                     EPVLLEIEANSCFKSFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQ
                     IINRSNEQATLILVATESYL"
BASE COUNT         1772 a         1145 c          912 g         1703 t
ORIGIN      
        1 gatatttata aggaaatgtt gagtgcacga gatattaaat aatttttgct cgtataagaa
       61 gagttgacat ggtgttaact ccagcattta tagttactcc atactaaatg ctaggaggaa
      121 ttgccatgaa aaaatatgtt gtcatcacag gtgcgagttc cggcatcggc tatgctaccg
      181 ctaaagggtt tgcaaaacgc aaaaataatc tcatcttaat tgccagaaga gaagctaatt
      241 tgttgaagtt gaaaaatgag attgagaagg aagtacccga aattgaagtc ctaatcaaag
      301 cgatcgattt gacaaaaata gaccgtttag agaaattatt ttctgaattg gatccttatt
      361 tcattgaaac atggataaat aatgctggtc taggatatta tagtgaagtt aaaaaccaga
      421 gcctaactaa gactttacaa cttcttcatt tgaatattga agcattaaca gttctatcag
      481 tcttgtatgt tagaaagtat catgaccaat caggtacaca gctaattaat gtttcttcag
      541 caggcggcta tacgatggtt cctgccgcag caacttattg tgctagtaaa ttctatgtta
      601 gttcctttac tgaagcatta agtttggaac tacgagaaag ctgctctcca cttcaagcaa
      661 aagtattagc accagctgct accaaaaccg aatttggaca aaaagcaaat gatgtaagcg
      721 actatgacta tgacaaaaaa tttaataatt atcatacaag tgatgaaatg gcccaatttt
      781 tattggattt gtatgacagc gacaaaattg tcggcatgat tgataggaaa gcattctcat
      841 ttactttgac tgaaaatttg ttttcatacg caaatcaagc ctcttctaat caaaaataag
      901 gaattgtaaa aaaaagactc ttgtatcata atacaagagt ctaattgttt gagatgaagc
      961 tttatttccg atacatctta aactccaaaa ataattcatt ataatacgac agcattcgtt
     1021 taccgaggtt atcatatact tctaaattat tcagttcatc catatccgga taaaaacgtt
     1081 catcactaga aatttctttt ggtaacaatt tgacggcttt ttcatttggt gttgcatagc
     1141 cgacatattc agcgttaatt gcggcatttt ctggttttag catgaagtta ataaatttat
     1201 gcgcgccatc gacatttttc gccgtttttg gaatgaccat gttgtcgaac cataaattcg
     1261 agccgtcttt tggaattacg tattctaaat cttcattttc acttaacatt tccgccgctt
     1321 ctccggagaa agtaaccgcg acacccgcct cattgtccgc catgagaagt ttaatctcat
     1381 cgccaacaat tgcttttaca ttcggtgtca tcgtttctag cttgtctctg gcagcttgta
     1441 ggtgagcttt attcgtatcg ttcagtgagt aaccgagact attcagccca agccccatca
     1501 cttcacgcgc cccatcaatc agcaaaattt ggtttttcaa ttcgggatca aatagcgcat
     1561 tccacgtatc gaaattttta tccgggaaca tttctttatt ataaataatg ccaagcgttc
     1621 cccagaaata aggcatcgaa tatttattat catcatcaaa cgataaatcc ataaaacgcg
     1681 gatcaaggta tttttcattt ggtaatttgg aatgatcaag tgggatcaac aaattttctt
     1741 ctttcatttt gctaatcgcg taatcacttg gcaccgcaat atcaaaggtc gttccacctt
     1801 gctcaatttt cgtcatcatc gcttcattag aatcaaatgt ttggtaaatg accttgatgc
     1861 ctgtttcttt ttcaaattta gtaatgagcg atggatcaat gtaatcgccc cagttataaa
     1921 tagtcagcgt attgctccca gcatagccct cagagcggtt catcgttgtt gcaagtagca
     1981 tcattaggag tgcgacaaca atgactggca caaaaatttt cagcagttgc ttcattcttt
     2041 cgtcgccccc gtccgaatat ttttacttgt attacgttgg ttgataaagt aataaccgat
     2101 cacgagaata atcgtgaata agaaaatcag tgtcgacaaa gcattgatag aaagcgaaat
     2161 cccttgtcta gctcgggaat aaatttccac tgccaatgtc gagaagccat ttccagttac
     2221 aaagaacgtc accgcaaaat catctagcga gtacgttaat gccatgaaaa atccagctaa
     2281 aacgcctggc ataatatacg gcaaaataac cttagaaaga acttgccact ggcttgcacc
     2341 taagtcgcgc gccgcatcca ttaacgtcgg gctcatttct tgcaatttcg gcaaaatcat
     2401 caatacgaca atcggaatac taaaggcaat atgcgacact aggacggaaa taaaccctaa
     2461 ttttacgcct aaaatcgtga agaaaatcaa gaaactagca ccgataataa cgtccgggct
     2521 aacaatcaac acattattca aacttaaaag cgaatttttc gcgaatggtt ttggcataaa
     2581 tttaatcgcc agcgccccgc aaacgccgat aatagttgca atcaccgaag aaagcagcgc
     2641 aattacaaat gtatttaaaa caataattag taggcgcgta tcttggaaaa cttctttata
     2701 atagccaagc gtaaagccac taaaattatg catcgtgccg cctttattaa acgagtaaaa
     2761 aatcaaatag aaaatcggcg catataaaat cacaaaaaca agcactaaat aaatcgtacc
     2821 ccatttactt ttcttcattt acgcgcacct cttttctttt tcgagcctgt taggaacata
     2881 attaaaatca tcgcaataat taaaaatacg ccaattgtcg aacccattcc ccagtcttgc
     2941 gttactagga aatgctcttc aatcgctgtt ccgagcgtaa tgacgcggtt tcctgcaatt
     3001 aatcgtgtaa tcataaagag tgatagtgct ggaataaaaa cagcctgaca ccctgatttc
     3061 acgccatcag cagtgagcgg gaaaatcacc cgtctaaatg ttgtcaaact agatgcgcct
     3121 aaatcgcgcg acgcttgaat caacgtcgga ttaatttcct caattgcatt aaaaatcggt
     3181 aatatcataa acggaataaa aatataggtc gatacaaata agaaactaaa atccgtaaat
     3241 aaaatctgtt tcgaaccaat tccaattatt tccaaaaatt gattcgccgc cccgtatgtc
     3301 ccaaaaatcc caataaaggc atacgcttta agcagcaaat taatccaagt tggtaaaata
     3361 ataagtagca accacaattg tttatgtttt agtttcgtta ataagtaagc cgttggatac
     3421 gaaatcaaca acgtaaaaac agtaattaaa aatgcgtacc agaacgaact agccgtcatt
     3481 tttaaatata caggcgtaaa aaagtgaata taattatcta ccgtaaaatt gccatctaca
     3541 tcaaaaaaag aataataaac aattaataaa atcggcgcga ctacaaaaag taaaatccaa
     3601 agtacataag gaacaaggta aactgtacgg gtgcgtctat tcatcactgc acctcatcgt
     3661 agctatcaag ccgcttatcg aattcttcct ccgtttcccc gagacgcata acatgaattg
     3721 cctctggttc aaacgctaag ccaatcttat cacccacacg aacttttctc gttgtgtgaa
     3781 caagccattc atttccatca gtgtcgatac aacctacttc ataatgcaca ccacggaaaa
     3841 gcatccagtc tacggttact tgcagttgac ctttttcagc cgaagtaatc tctaaatctt
     3901 ccggacggat aactacttcc acgacttcat ttgggcggaa accttggtcg acacattcaa
     3961 aacgtctttc cacaaattcc acttcgaaat cttgtatcat tttgccatta acaatgttcg
     4021 attcgccgat aaaatctgcg acaaatttat taattggctc gtcgtaaata tcaattggcg
     4081 taccactttg ttgaatttcg cctttattta acacaaaaat ttcatcactc atcgcaagtg
     4141 cttcttcttg atcatgtgtc acaaaaataa acgtaattcc aagacgcttt tgcaaatcgc
     4201 gcaattcata ttgcatttcc gtacgtagtt ttaaatcaag cgctgatagt ggctcatcaa
     4261 gtaaaataac ttctggttca ttgacgattg cccgtgcaat cgcgacacgt tgtctttgtc
     4321 caccagacat ttcgctaatt tctctttttt cgtagccttt taagttaaca aagcgcagtg
     4381 cttcttttac tttttcgtca attgcatctt tttttagctt tttaatacgc agaccaaaag
     4441 ccacattttc atacacattt aaatgtggaa ataacgcata atcttggaaa acggtattta
     4501 caggacgttt attggctgga atttggttaa ttactttatc ccctagataa atttgtccct
     4561 ctgaagcttc taaaaatcca gctattaagc gcaaaatggt cgttttcccg caaccagatg
     4621 ggccaagtaa agtataaaac ttcccttttt ctatttcaaa gctgacattg tcaagcactg
     4681 gtggatcatt atcaaattgt tttgttacgt tttcaaaacg aataattgtt tctgtcacaa
     4741 tcatttacct cccttataaa tatgactctg tcgctactaa gatgagtgtc gcttgttcat
     4801 tcgatcgatt aattatttga tgttcatctg cggcgtggaa ataaattgct tccccttttt
     4861 tggctacata ctcatttcga ccaagcagca cggtcacttc cccttttagc acgtaggcaa
     4921 aagtttctga aagtgatggt tcgaagcttt taaaacagct atttgcctct atttcaagta
     4981 gcactggttc catttctttt tcattcgatt ctggaacaag ccacttaatt ctgtaacctt
     5041 tttcttcatc ttcaaagaaa gtatgctcta gttctccgta aattactttt tgattgtgtt
     5101 cttcttcatc aaagaaatct ttcggagtag aacctaacac ttccaaaata gcaaataacg
     5161 tttcgataga aggagaactc aaatctcgtt ctagctgaga aatatatccc ttcgtcaaat
     5221 ccgttcgttc gcctaattct tcttgtgtca aattcttact gagcctaaga ttttttatgc
     5281 gtttgccaat ttccatgtca atgtcctttc tttcaagttt agtgatagta aacctcaagt
     5341 cacagaagtt tactaatatt aaacacgaag tttacttaca gcaagctaca ttatacaaca
     5401 aagcttccac atgaacaata gtttttttga atttccctaa gatagacaac gtttattttt
     5461 agtgctaaaa tttctttaat aaaacagctt aggtggcaga tattcatgaa aaaatatcgc
     5521 ttttcagaac tc
//
LOCUS       DASDXX010000167         5345 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.167, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000167 DASDXX010000000
VERSION     DASDXX010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5345
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.167"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..195
                     /locus_tag="U0280_002355"
     CDS             <1..195
                     /locus_tag="U0280_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272279.1"
                     /translation="LFFPTKDGLLKIHAYGFNPCGSWGEVFATIGDQTICVKGFNRHK
                     TIVRATKMIISATANRKNEF"
     gene            500..733
                     /locus_tag="U0280_002356"
     CDS             500..733
                     /locus_tag="U0280_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkuJ family protein"
                     /protein_id="HEM2272280.1"
                     /translation="MSQLLGIIQRLHAMQEDESAETQARRFEKNGTPVCEVKFFQASN
                     SFEVEIYGDNSKYQFDDIDMTAIEIFETLQENE"
     gene            935..1387
                     /locus_tag="U0280_002357"
     CDS             935..1387
                     /locus_tag="U0280_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM2272281.1"
                     /translation="MISNRFGQFIDNELADSMISAEKVAHVQLGNNLEHALLVLTKCG
                     YSVIPVLDFEFKLHGLISAAMITDAILGLERIEFERLEDLKVEDVMQTDFPVIKDFNN
                     NERIVHLLVDHPFVCVVDADHHFEGIVTRRVVLKQVNRYIHLQVEENR"
     gene            1384..2262
                     /locus_tag="U0280_002358"
     CDS             1384..2262
                     /locus_tag="U0280_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2272282.1"
                     /translation="MIVTEYELLVCLAEELNMRKSAEKLFLSQPALSQRLQTIESRWN
                     TKIFIRTQKGLLLTPEGEAIVRHASSVIEREHTIQEKLEAMEGVVRGTLRIACASVVA
                     QMWLPRVLKAFSRTYPNVQISLVTGWSSEVTQQLAAGNVHIGIVRGSSTWKSVQKPLF
                     NDKLILVDTEITKIEEVFQTNRPFIQFRSDSNYYQVIQDYWQRNFGKMPRQAMLMDQM
                     ETSRQMALNGIGFAILPEVTMIGYTDKINKIPLTEKDGSILSRETNLLTYEQSLSLPQ
                     VKAFLEITDKFLEQVK"
     gene            2310..3020
                     /gene="dapD"
                     /locus_tag="U0280_002359"
     CDS             2310..3020
                     /gene="dapD"
                     /locus_tag="U0280_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HEM2272283.1"
                     /translation="MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFIT
                     GNAGTIFGEWAVVEPFLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRD
                     QVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEP
                     PSAQPVVVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKK
                     LDAKTASKTEIMQELRQL"
     gene            3084..4199
                     /locus_tag="U0280_002360"
     CDS             3084..4199
                     /locus_tag="U0280_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HEM2272284.1"
                     /translation="MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVK
                     KWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIA
                     LGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKV
                     GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDP
                     MDSAVITIGRIHGGEIQNVIAETAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQC
                     EVEFHPGSDYYQVDNDPVETEAFIHFLEEQYPESYVPARSAMTGEDFGYFLSEIKGFM
                     FWLGVDSEYSLHHAKLSPKEEAIPFAIDVLIHFLESK"
     gene            complement(4243..5088)
                     /locus_tag="U0280_002361"
     CDS             complement(4243..5088)
                     /locus_tag="U0280_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEM2272285.1"
                     /translation="MNLLKKWFSSIDWDQFWNHIISVGIKIAILIALYFIFRVVGNKI
                     IRSFFRKYRQQQAVSVGRADTLESLISNFYGYVLFFTFAILLLQNFMDVTAIIASAGV
                     ASLAIAFGAQGLVSDVVTGFFILLERQLDVGDTITIGLVNGTVEALGLRTTQVRDFDG
                     TLHFIPNRQIMVVSNHSRGNMRVMVDIQISPHEDPEKAIKIIGEVCDVAAKENKNIVE
                     PPVVLGVQNIDATNMIIRVVGKAVNGEQYSVQRDLLKDIREALAENEIELPLNFVSTF
                     GPNNN"
BASE COUNT         1751 a          926 c         1102 g         1566 t
ORIGIN      
        1 ctcttttttc caacaaaaga tggcttgcta aaaatacatg cttatggctt taatccctgt
       61 ggttcatggg gcgaagtatt tgcaacaatt ggtgatcaaa caatatgcgt taaaggtttc
      121 aatcgccaca aaaccatcgt acgagcgaca aaaatgatta tcagtgctac tgctaatcgg
      181 aaaaatgaat tttaattatc aaagactgta ggaaggttaa tcccttttta tagtcttttt
      241 tttggataaa ataacggcaa agtagaacaa atcatgtctt ttaggttaat ttaaaataat
      301 ttctttttct gaatatttcc agaacccttg cgttatacgt gcggtttgcg ataaaatttg
      361 gtagtatagt gaaagaaata agatatggcg aaaaaaccag atatgaggaa atatgtaaaa
      421 aagcattgcc acgcgcgtat aatagcaagg tatgccaatt tttgcacgtc agatggtgga
      481 tttgagagga gagtgtaaga tgtctcagtt attgggaatt attcaacgtt tacatgcaat
      541 gcaagaagat gagtctgctg aaacacaagc aagacgtttt gaaaaaaatg gtacgcccgt
      601 gtgcgaagta aagttttttc aagcttctaa ctcatttgaa gtagaaatct acggcgacaa
      661 tagtaaatat caattcgatg atattgatat gactgctatc gaaatttttg aaacgctaca
      721 agaaaacgaa taacatggta aagatcggat aagccggtgg tttacttagg gggctgtgaa
      781 tttatattca cagctttttt tgttttcaag cactaaatga aagaaattag accaaatagt
      841 atggtagaat aggagatgga aaagtttcga tttattttaa aaagttgaaa gaaacttcgt
      901 agagcttgaa aataaaggaa gaggaagatt ctaaatgatc tcaaatagat ttggacaatt
      961 tattgataat gaactagctg attcgatgat ttccgctgaa aaggttgctc atgtacagct
     1021 tggtaataat ttagaacatg cattacttgt tttaactaaa tgtggttatt cagttattcc
     1081 tgtactagac tttgaattta aactccatgg attaataagt gcagcaatga ttacggatgc
     1141 cattcttgga ctcgaacgta tcgaatttga acgattagaa gacttaaaag tagaggatgt
     1201 catgcaaacg gatttcccag taatcaaaga ttttaacaat aacgaacgaa ttgtgcactt
     1261 acttgtggac catccttttg tatgtgttgt agatgctgac caccattttg aagggatagt
     1321 aacaagacgt gttgttttaa aacaagtcaa tcgttatatt catttgcagg tggaggaaaa
     1381 tagatgattg taacagaata tgaattactt gtttgtttag cagaagagct taatatgcgt
     1441 aaaagtgcgg aaaaactatt tttaagtcaa ccggccttat cgcaacgctt acaaacgatt
     1501 gaaagtagat ggaataccaa aatttttatt cgtacacaaa aaggcttact gcttacacca
     1561 gaaggagaag ctattgttcg tcatgcgtct agtgtcattg aacgagagca cactattcaa
     1621 gaaaaactcg aagcgatgga aggcgttgtc cgcggaacat tacgaattgc ttgtgcaagc
     1681 gtagtggcgc aaatgtggct tcctcgggtt ctgaaagcat tttcaagaac gtaccctaat
     1741 gtgcaaattt cacttgtaac tggctggagc agtgaagtta cgcaacaact cgctgctgga
     1801 aatgtccata tcggcattgt ccgtggaagc tccacatgga aaagtgttca aaaaccgtta
     1861 tttaatgaca aattaatttt agtagacaca gaaattacca aaattgaaga agttttccaa
     1921 actaatcgac catttattca atttcgcagt gattcgaatt attaccaagt tattcaagac
     1981 tactggcaac gaaatttcgg aaaaatgcca cgccaagcaa tgcttatgga tcagatggaa
     2041 acctctagac aaatggcctt aaatggtatt ggttttgcaa ttttaccgga agtgacgatg
     2101 ataggctaca cagataaaat caacaaaatt cccttaacgg aaaaagatgg ctcgatttta
     2161 agccgggaaa ccaacttgct gacctatgaa cagtcactca gtttaccaca agtgaaggcg
     2221 tttttagaaa taacagataa attccttgaa caagttaaat agctatggca aaatagaaaa
     2281 cagaacgtat cggaagggga caaaaattca tggaacaaat ggatgcacat caaattattt
     2341 cttttattca aaatagcaag aaagcaacac ctgtaaaagt ttaccttaaa ggggacttag
     2401 aaaaaattga tttccctagt gatgttaaaa ctttcattac tggaaatgcg ggaactattt
     2461 ttggagaatg ggcagttgtt gagccatttt tagaagcaaa taaagcgaat attgaagatt
     2521 atgttatcga aaatgatcgt cgtaactcgg ctattccttt gttagatatg aaaaatatta
     2581 acgcacgtat tgagccaggc gcagttattc gcgaccaagt aactattggt gataatgctg
     2641 taattatgat gggagcaagc attaatattg gttctgttat cggtgacggt acgatgattg
     2701 atatgaatgt tgttctaggc gggcgcgcaa cggttggtaa aaattgccat atcggtgcag
     2761 gttctgtgct tgctggcgta gtggaaccac catccgcaca accagttgtc gtagaagata
     2821 atgttgttgt aggcgccaat gtggttgttt tagaaggtgt acgtattgga gaaggcgcag
     2881 tcgtagcagc tggcgcaatc gttacaaaag acgtagctcc tggaacagtt gtggctggga
     2941 ttcctgcacg tgaacttaaa aaattagacg caaaaacagc ttctaaaact gaaatcatgc
     3001 aagaacttcg tcaactttaa aaattaaagg gaactgtttc gtctgttggc gaagcagtcc
     3061 ttttttagaa ggagagaatc gctgtgttaa atgaatttat tgccattcga cgagagttac
     3121 accaaattcc tgaaacaggt tataaagagc ttaaaaccca agcctattta ttagactata
     3181 ttagcaaatt accgagtgaa catttagaag tgaaaaaatg gcgtacgggg attttggttt
     3241 tagtaaaagg aactaatcca gaaaaaacaa ttggttatcg taccgatatt gatgcgttgc
     3301 caattacaga agaaactggg ctgccttttg catcaaaaca tcctggcaat atgcatgctt
     3361 gtgggcacga tttacatatg agtatcgcgc ttggtgtatt gacgcatttt gcgagtaaac
     3421 cagccaaaga taatttgctt ttcgttttcc agcctgccga agaaggtcca ggtggtgcaa
     3481 aacccatcat ggaaagcgct gaatttgccg agtggcgacc ggatagcatt tatgggcttc
     3541 atatcgcacc agaatacaaa gtcggagaaa ttgcaattaa gccaggttta ctttttgcga
     3601 atacatcgga actttttatt tcgtttaaag gaaaaggtgg acacgcggcg tatcctcatt
     3661 tggcgaatga tatggttgtc gcagcaagtg cgtttgttgg gcaaatgcaa acgattataa
     3721 gtcggaatat tgatccaatg gatagtgcag ttattacgat tggccgaatt catggcggag
     3781 aaattcaaaa tgtcattgcg gaaactgctt atttagatgg aaccattcga acgctttccc
     3841 ctgaaacaat ggagattgtt tggactcgtt tgaaacagct agcgaaaggc tgggaagaag
     3901 cttaccaatg cgaagttgaa tttcatcctg gctcggatta ttatcaagtg gacaatgatc
     3961 cagttgaaac agaagcattc atccactttt tggaagaaca atatccagaa agttatgtgc
     4021 cagctcgttc ggcgatgact ggagaagatt ttggttactt tttatccgaa attaaagggt
     4081 ttatgttttg gttaggcgtg gattccgagt acagtttgca tcatgcgaaa cttagtccaa
     4141 aagaagaagc tattccattt gcaattgatg tattaatcca ctttttggaa agtaaataaa
     4201 aagacgtcaa ttcgttctca aaaggagcga attggcgtct ttttaattat tatttggtcc
     4261 gaaggtgctg acaaaattaa gtggtaactc gatttcgttt tctgcgagtg cttcgcgaat
     4321 atctttgagt aagtcacgtt gaacagaata ctgctcgccg ttcactgctt taccgactac
     4381 gcggataatc atgtttgttg cgtcaatgtt ttgcacacct aatacaacag ggggctcaac
     4441 gatattttta ttttcttttg cagctacgtc acaaacctca ccgataattt taattgcttt
     4501 ttccggatct tcatgtggac taatttgaat gtccaccatc acacgcatat taccgcgcga
     4561 atgattacta acgaccataa tttgcctgtt aggaatgaaa tgaagcgtgc catcaaaatc
     4621 acgtacctgt gttgttctaa gtccaagtgc ttctactgtt ccattaacta gtccaatggt
     4681 aatcgtatca ccaacatcaa gttgacgttc aagtaaaata aaaaatccag tcacaacgtc
     4741 actaacaagt ccttgcgcac caaaggcaat agccaaactc gccaccccag cacttgcaat
     4801 aatcgctgta acatccataa agttctgtaa taataaaatc gcaaaagtga agaataaaac
     4861 atagccgtaa aaattagaaa tcaagctttc taacgtgtcc gcgcgcccaa cagaaactgc
     4921 ttgttgttgc cgatatttgc ggaagaaact acggataatt ttattcccaa ccacgcggaa
     4981 aataaaataa agagcaatta aaatggcgat ttttattcct actgaaataa tatgattcca
     5041 aaattggtcc cagtcaatag aactgaacca ctttttgagt aaattcatct tctggtccac
     5101 atcctttgaa agttctccat ccatttcatc tcccccttcc taaatgaaat gtccttttct
     5161 attctaacaa atattttata aaaatgctgt ttttaaaata aattatcccc agaaaatgcg
     5221 cttttttcgt gaaaaatcct ccttttttac aaaaaaaatt aaaaaactgt cagccgctgt
     5281 tgttgtaaga tggaggcgct ttctaaaatg tgcaaaatag cgcaaaccaa actgtatgat
     5341 gtgaa
//
LOCUS       DASDXX010000168         5311 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.168, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000168 DASDXX010000000
VERSION     DASDXX010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5311
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.168"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..573)
                     /locus_tag="U0280_002362"
     CDS             complement(<1..573)
                     /locus_tag="U0280_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEM2272286.1"
                     /translation="MTNCLLCFQPVRQSASWEISWLFEPLPICCDACLAGFEKLTGLL
                     CKNCSKESLDDVCEDCRSRTHFLDSNKSIYRYNDFAKDYMKKFKFQGDYEIGAIFKKE
                     LRNFLSEKKEKIVPIPVSEMRKVERGFNQTTAILKQSGILYEELLAKKHTEKQSKKTK
                     RERLASEQTFYFSGKEIYESTEVILFDDIYT"
     gene            complement(566..1885)
                     /locus_tag="U0280_002363"
     CDS             complement(566..1885)
                     /locus_tag="U0280_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2272287.1"
                     /translation="MDIFPGRLYQEREIESKEGLREVVAIESNKCFRCGNTDVQLFGK
                     MSCALCKREDCIYCRNCIVMGRVNSCQKLYYQHARLLLETKEVLLRWEGALSAGQRKA
                     SNAIVVNLKAKTDMLLWAVAGSGKTEMMFEGMDWALRQGFRICVASPRVDVCLELLPR
                     LKEAFPSIDIVCLYGDSKDNYQGEQFVIATTHQLIRFYEAFQVIFIDEVDAFPYAKDP
                     FLEYAVMKARTKEGSTIIITATPEKKWQEECVRGKRNFVKIPGRYHRKKLPVPRTCWI
                     GPWKKNLAKGKITPKLIQWMNDVKKKDQPALIFFPEIDAMNKFANALENKGYASPVTV
                     HSADELRKEKVEWLRKGKIKLLLTTTILERGVTFTDVQVAVFGSEARIFTEAALVQIS
                     GRAGRKLSHPTGDVCFFHYGKTIEMKQAISHIQKMNQQGVIEGMLDD"
     gene            complement(2081..2932)
                     /locus_tag="U0280_002364"
     CDS             complement(2081..2932)
                     /locus_tag="U0280_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM2272288.1"
                     /translation="MNEKIAVVTDSTTYLPNEVKEQLRINVVPLSVIIDGKSYREGEE
                     LSAADFYRKVKEAENFPTSSQPAPGDFIHLFEQLKEQGFDTVISIHLSSGISGTFQNA
                     ASAGELIEGLNVVAYDSELSCMAQGMFVVKAAEMALANEPLDQIIQKLDKIKQAQDAY
                     FMVDDLNNLQRGGRLNGAQALVGSLLQIKPILHFNDKQIVLFEKVRTQKKALKRIEDI
                     LQKAVQNKTAEKAYVIHGNDLAKGEAWLAQLEAKFPEVTFELSYFGPVIGTHLGEGAL
                     GLTWSIK"
     gene            complement(2953..3639)
                     /gene="degU"
                     /locus_tag="U0280_002365"
     CDS             complement(2953..3639)
                     /gene="degU"
                     /locus_tag="U0280_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DegU"
                     /protein_id="HEM2272289.1"
                     /translation="MALKIMIVDDHQLFREGIKRILELEDSFEVVAEAENGKNIVAKV
                     REYKPDIVLMDINMPTVNGLDATEMLVRQFPSIKVIVLTIHDTDEYVTEALRAGAVGY
                     LLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKM
                     PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVT
                     AIKHGWVYIR"
     gene            4024..4659
                     /locus_tag="U0280_002366"
     CDS             4024..4659
                     /locus_tag="U0280_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEM2272290.1"
                     /translation="MLDHYLTIHSDGKHEIIIEKSRFICHIKRATTETEAQTFIQEIK
                     KEHRDATHNCSAYIIGENDQYQKAHDDGEPSGTAGVPMLEVLKKKSLKNVAVVVTRYF
                     GGTKLGAGGLVRAYGNAVSEAIQAIGIVECKLATIVECSFAYPLLGKIENALELKAYQ
                     IDKKEFTEKVVLHIFVDNDELQDFFNWITEISNGQLEYKEGPQKYREKDVT"
     gene            4661..5206
                     /locus_tag="U0280_002367"
     CDS             4661..5206
                     /locus_tag="U0280_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272291.1"
                     /translation="MSTNVFIQLPDTILTKRTILKKTSIADATTLFDIWSDDEVAQFM
                     NIEKFSTILQAEEMIQAIENEPNACRYTIFTTDDSLHAIGSLGINDINKTNQTIEIGY
                     ELAKSHWRQGFMFEILTTFLTTVKPYLPYKVLTAKVLPDNVASIKLLKKLGFELTTTG
                     QELDLHSGRICEISNYRMLLK"
BASE COUNT         1612 a         1118 c          815 g         1766 t
ORIGIN      
        1 ggtgtaaata tcatcaaata atattacttc tgttgactca taaatttctt ttccagaaaa
       61 gtaaaatgtt tgttcagatg ctaatcgttc cctctttgtt tttttagatt gcttttctgt
      121 atgctttttg gctaaaagct cttcatatag gatgccagat tgttttaata tcgcggttgt
      181 ttgattaaat ccacgttcta ctttccgcat ctcgcttact ggaattggta caatcttctc
      241 tttcttttct gatagaaagt tccttaattc ctttttgaaa atagccccta tttcataatc
      301 cccttgaaat ttaaacttct tcatatagtc tttggcgaaa tcattgtaac gataaatgga
      361 tttattacta tctaaaaaat gtgttctact tcggcaatcc tcgcagacat catctaagga
      421 ttctttacta caatttttac atagtaagcc agttagtttt tcaaatcccg ctaagcatgc
      481 atcacaacaa attggcaaag gttcaaataa ccaacttatt tcccaactgg cgctttgcct
      541 aactggctga aaacaaagta agcaattagt catctagcat cccttctatc actccttgtt
      601 gattcatttt ttgaatgtgg gagatagctt gcttcatttc tattgtttta ccgtaatgaa
      661 aaaagcaaac gtctccagtc ggatgagata atttcctacc tgcccttcct gaaatttgaa
      721 ctaaagcagc ttccgtaaaa atacgagctt cacttccaaa caccgctact tgcacatctg
      781 taaaagtaac acctctctct aaaattgtag ttgttaataa cagcttgatt ttcccttttc
      841 gtagccattc cactttctct ttacgcaatt catcggctga atgaactgtc actgggctgg
      901 catagccttt attttcaagt gcatttgcaa atttattcat agcatcaatt tctggaaaga
      961 aaattaaagc cggctgatct ttcttcttca catcattcat ccactggata agcttaggag
     1021 ttattttccc tttagctaga ttctttttcc acgggccaat ccagcacgtt ctcggcacag
     1081 gcagtttctt tcggtgatat cgtccgggaa ttttcacaaa attacgtttt cctcttacac
     1141 actcttcttg ccactttttc tctggggttg ctgtgattat tattgttgaa ccttcttttg
     1201 ttctggcttt cataacggca tattctaaaa aaggatcttt cgcataagga aatgcatcta
     1261 cttcatcaat aaaaataact tgaaacgctt cataaaagcg aataagctga tgggtcgtcg
     1321 ctatcacgaa ctgctctcct tggtagttat cttttgagtc tccatataga caaacaatat
     1381 ctatgctagg gaaagcttct tttaaacgtg gaagaagctc taaacaaaca tccactctcg
     1441 gagaagcaac acaaattcta aaaccttgtc gcaaagccca gtccattcct tcaaacatca
     1501 tctccgtttt tccagatccg gcaactgccc atagcaacat atccgttttt gcttttaaat
     1561 taacgactat cgcgttggat gcttttcgct gtcccgctga caaagctcct tcccacctca
     1621 ataatacttc ctttgtctct agtaataacc tagcatgttg atagtataat ttttggcaac
     1681 tatttactcg tcccatcaca atgcaatttc tgcaataaat acaatcctct ctcttacata
     1741 atgcacagga cattttgcca aataactgca catccgtatt tccacatcga aagcatttgt
     1801 ttgattctat tgctactact tctcttaagc cctctttact ctctatttca cgttcttgat
     1861 aaagccttcc cgggaagatg tccatctgta ttcacctccc cttagttata cactttttct
     1921 ttttttattg cagaaacgaa atccttgttt tcgaccgcat acttataaac aaaacaagta
     1981 tttcttttag acgaaaacga gtatttttgc catccaaaac tactgaaaaa acaaatttag
     2041 tctccatgaa aaaaatctcc agcttttagc tggagatttt ttattttatt gaccaagtta
     2101 agccaagcgc accttcaccc aagtgagttc caatgactgg accaaaataa cttaattcaa
     2161 atgttacttc tgggaatttc gcttctagtt gtgcaagcca tgcttcaccc ttcgctagat
     2221 cattgccatg aatgacataa gctttttctg ccgttttgtt ttgaacggct ttttgaagaa
     2281 tatcttcaat tcgtttcaat gccttttttt gcgttctaac cttttcaaag aggacaattt
     2341 gtttatcatt aaaatgaaga atcggtttaa tttgaagcaa gctaccaaca agggcttgtg
     2401 ctccattcaa acggccgcca cgctgtaaat tatttaaatc atctaccata aaataagcat
     2461 cttgtgcctg ttttatttta tctagttttt ggataatctg gtccagcggc tcatttgcca
     2521 aagccatttc agctgcttta actacaaaca ttccttgcgc catgcaagaa agctcagaat
     2581 cataagcgac gacatttagc ccctcaatta actctcctgc tgaagccgca ttctgaaacg
     2641 ttccactaat accgcttgat agatgaatac taattacagt atcaaaacct tgttctttca
     2701 gctgttcgaa caagtgaatg aaatctcctg gggcaggttg agaggaagtt gggaaattct
     2761 cagcttcttt tacttttctg taaaaatcag ccgcagataa ctcctcacct tcacgataag
     2821 attttccgtc aattattaca gaaagtggca cgacattaat tcgtagctgc tctttcactt
     2881 catttggcaa ataagttgtg ctgtcagtaa ccactgctat tttttcgttc atatagtccc
     2941 cctgatattt ctttagcgaa tatataccca gccgtgcttg attgccgtta ccaccgcttg
     3001 agtcctatca ttcactttca ttttttgtaa aatactactt acatggtttt ttactgtttt
     3061 ttcactaatg aaaagtgtct ccccaattcc gcggttactt tttccatcgg taagaagttg
     3121 caatacctcg cactctctat gcgttaagat gtgtagtggc attttgactt caggttgttg
     3181 gtagccataa acaccttgag aagtgttagt gcttgctaaa tggcggtatt cacgaattaa
     3241 tttaatcgct acacgtggat gaatatacgc gcctccatta tcaacaattt ttacagcttc
     3301 tacaagttca tgggcatcca tttcttttaa taaataaccg actgctccag ctctaagcgc
     3361 ttctgttaca tattcatctg tatcatgaat agtcaagacg attactttga tgctaggaaa
     3421 ttgacgtact agcatttcag ttgcatctag tccgttgaca gttggcatat taatatccat
     3481 taaaacaata tctggtttat attcgcgaac ttttgctacg atatttttac cattttcagc
     3541 ttccgctacg acctcaaaag aatcttccaa ctctaaaatt cgcttgatac cttcgcgaaa
     3601 caactgatga tcatctacaa tcatgatttt gagtgccata atgactactc ctccttcact
     3661 tatctaattt caccaagcct ctttgcaatc gaaaacatca tcctttttaa gtagcaaaac
     3721 cgcttaacct tataatccct gccataaaat tggcaattaa acatttctct tttaagtact
     3781 atttactcaa acttacctat tttcaacaca aactatacct tgattatact gcatagccca
     3841 agaaaattac tcctatatgc ctataaaatg taattgaaaa ccagtctaaa gtaatagtag
     3901 tttttattat aacacgaatt tgccgtcact tcacccactg cacttagaaa aatatctata
     3961 caatcgcttt gctttcggat aaaataaaag caggctaaat gcatcaactt atggaggttc
     4021 cttatgttgg atcattattt aaccatccat agcgatggaa aacacgaaat aattattgaa
     4081 aagtcccgct ttatctgcca cattaagcga gctacaacag aaactgaagc acaaaccttt
     4141 attcaagaaa tcaaaaaaga gcatcgtgat gctacccata attgttctgc ttatattata
     4201 ggagaaaatg accaatatca aaaagcgcat gacgacggag aaccaagtgg aacagctggc
     4261 gttccaatgc tagaggtctt aaaaaagaag tctttaaaaa atgttgctgt tgtagttact
     4321 cgttattttg gaggaacaaa actaggtgca ggcggcttag tccgcgcata tggtaatgct
     4381 gttagtgaag ctattcaagc aatcggtatt gtcgaatgca aactagccac tattgttgaa
     4441 tgctcttttg cttatccact tttaggaaaa atcgaaaatg cgcttgaact aaaagcatat
     4501 caaatcgaca aaaaagagtt cactgaaaaa gtagtacttc atatttttgt tgataacgac
     4561 gaactgcaag attttttcaa ctggatcact gagatttcaa atggacaact tgaatataaa
     4621 gaaggaccac aaaaatatag agaaaaggat gtcacttagt atgtccacaa acgtatttat
     4681 ccaattacca gatactattc ttactaaacg aactatatta aaaaaaacct ctattgcaga
     4741 tgctactaca ttatttgata tttggtctga tgatgaggta gctcagttta tgaacatcga
     4801 aaaattctct actattcttc aagcagaaga aatgattcaa gcaattgaaa atgaaccaaa
     4861 tgcttgcaga tacaccattt tcacaactga tgattcttta catgcaattg gttcgcttgg
     4921 aattaatgat attaacaaaa cgaaccagac aatcgaaatt ggctatgaac tagcaaaaag
     4981 tcattggcgc caaggtttta tgtttgaaat tttgacaaca tttttaacca ctgtaaagcc
     5041 ctatcttccc tataaagtgc ttacagcaaa agttctacca gataatgtag cttcaatcaa
     5101 actactgaaa aagcttggtt ttgagcttac cacaactggg caagaactag atttacattc
     5161 tggtaggatt tgtgaaatca gtaattatcg aatgctactg aaataggaca aatattacat
     5221 ttttgaaaga tatcatcttt tttgtatttt ttttcgagta atttctgtat aataacatca
     5281 aagtttaaaa attaaagaaa ccgtaaatcg g
//
LOCUS       DASDXX010000169         5274 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.169, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000169 DASDXX010000000
VERSION     DASDXX010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5274
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.169"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..591)
                     /locus_tag="U0280_002368"
     CDS             complement(<1..591)
                     /locus_tag="U0280_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HEM2272292.1"
                     /translation="MNNSDLAKEVVKLVGGKENILSVIHCVTRLRFKLRDENLAETEK
                     IKALKGVMTVVKSGGQYQVVIGDHVSYVYDEVIRVLGIKPDDAPQDNPEQEHKSIFNK
                     FVELISGIFMPVLGLLAASGILKGFLTAAVTMGLINTSAGVYEVLYAASDALFYFMPI
                     ILGFSAGKVFKTNQYLSAAVGAALVYPTLVDMYSSGA"
     gene            complement(588..2051)
                     /locus_tag="U0280_002369"
     CDS             complement(588..2051)
                     /locus_tag="U0280_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase"
                     /protein_id="HEM2272293.1"
                     /translation="MKKHYQIAIDQSTSGTKVLLFKVGELVDRLDKKHRQLYPKKGWV
                     EHNPIEICQNVRTLIADILAKHDLIPADIERLALTNQRETIVAWDKQTGKPLYNAIVW
                     QCNRTKELCETLKKAGYEKRIKQLTGLKIDSYFSASKMKWLLENSSAVRDAASRNQLA
                     FGTMDAWLLFSLTDDSNYFTDRTNASRTLLYDIEKNDWSDELLELFGVKRAYLPEVKQ
                     SAGSFGSYQEIPIHSVMADSEAALYGQGCDAFGAVKATLGTGCSVMMQIGENRLPEND
                     AILTTLAWDVAGVNQFALEGIIRSCGDTLVFLSEQLELFNDYDTACKRAFQLPCNEGV
                     VLIPGQLGLGSPYWNTDIRAEILGLTREHTKWHIIRAGFTSIAFQIKAVIDQMELMTG
                     QNIKRLQVDGGLTKQHELMQYLADVLKAEVAVSPAEELSAIGAIEIADNKLQNKRTIA
                     KLYQPNITHTHALEDFQEWEKQVKSSILKLQKVRNFK"
     gene            complement(2048..2995)
                     /locus_tag="U0280_002370"
     CDS             complement(2048..2995)
                     /locus_tag="U0280_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HEM2272294.1"
                     /translation="MNKIANRQVMCEVLMKEATRNDSNLVVLTSDSRGSASLGAFAEK
                     FPERLVETGIAEQNIVGIAAGLAHSGKRAFVASPACFLSMRSIEQVKVDVAYSDTNVK
                     LIGISGGVSYGALGMSHHSLQDIAVTRAIPNLEVILPADRLETEAVFDYLLQSNRPAY
                     VRLGRNAVEDCYAEKPVFQIGKAGTLRKGNDVSILATGEMVRVALDAREELKLKGISA
                     RVLNFSTIKPFDQGAVEAALAETKLLISIEEHSIYGGLGAAVSEVVSSSPTSIRHLIL
                     GIPDEPAIAGTSQEIFDYYGLSATGIVATVMKNLGDERR"
     gene            complement(2988..3812)
                     /locus_tag="U0280_002371"
     CDS             complement(2988..3812)
                     /locus_tag="U0280_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2272295.1"
                     /translation="MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALYYGV
                     LNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRLIGHPNN
                     KVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAAN
                     YKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEVDGNDPDKLQAIFKT
                     VNVTGKPRLIIAKTIKGYGVKIAENAAKWHHYVPSSEEYEIAMKDLEERMEACRHE"
     gene            complement(3827..5230)
                     /locus_tag="U0280_002372"
     CDS             complement(3827..5230)
                     /locus_tag="U0280_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose/L-arabinose isomerase family protein"
                     /protein_id="HEM2272296.1"
                     /translation="MEAVKIGFAPTRRSIFSAPDAVKYANLTRDKLNELNIEFVDIAE
                     FNEDGLLYDDADMMKIAAKFKKAGIQGLFLPHTNFGTEYVCARLAKELDVPVLLWGPR
                     DERPDENGVRLRDTQCGLFATGKILRRFQVPFTYMTNCRLSDPEFERGIRDFIAVCNT
                     VKTFQNMRILQIGPRPFDFWTTMCNEGELLEKFNIQLAPIPLPELIKEIRSVSSEQIE
                     EVDGTVEYCHGCAIVKIKEVDLRMVAALKVAMKNLATKYGCSAIAIQCWTALQDEIGI
                     MPCAANAMLIDEGIPVVCETDIHGAISCLLIEAANLGRNKSFFADWTVRHPDNENGEL
                     LQHCGLFPFSVAKDKPAIGYPLAFDSPGAVEAEAKGGELTLCRFDGDNGEYSLLLGKA
                     RGIEGPYTKGTYLWIEVDNLKRLEEKIVSGPYIHHVSGIHADVVPILYEACKYIGIKP
                     DLYDPIEEDIKAYLRGE"
BASE COUNT         1523 a         1246 c          804 g         1701 t
ORIGIN      
        1 agctccgctg ctatacatat caacaagcgt cgggtaaaca agtgctgcac caaccgcagc
       61 agaaagatat tgattcgttt taaatacttt ccctgctgaa aacccaagta taattggcat
      121 aaagtaaaag agggcatcac ttgctgcgta aagaacttcg taaacaccag ctgaggtatt
      181 aattagtccc attgtaactg ccgctgtcag gaatcctttc aaaatacctg aagctgccaa
      241 tagacccagt actggcataa atattccaga aattaattca acaaacttat taaaaatact
      301 tttgtgttct tgttcagggt tatcttgcgg cgcatcatct ggtttaatcc ctaatactcg
      361 aatgacctca tcataaacat aactcacatg atcaccgata accacttggt attgtccacc
      421 acttttcaca accgtcataa caccttttaa ggctttgatt ttttctgttt ctgctagatt
      481 ttcatcacgt aacttaaacc gtagtcttgt cacacagtga attacactca aaatgttttc
      541 ttttccacca acaagcttta caacctcttt tgcaagatcc gaattattca tttaaaattc
      601 ctcaccttct gtaattttag aatactgctt ttcacttgtt tttcccattc ttgaaaatct
      661 tccaaagcat gtgtatgagt gatatttggt tggtacaatt ttgctatcgt tctcttattt
      721 tgtagtttat tgtcggcaat ttcaatagca ccaattgccg aaagttcttc cgcgggactg
      781 actgccactt ctgcttttaa aacatctgct aaatattgca tcaactcatg ttgctttgtt
      841 aatccaccgt ctacttgtaa gcgcttaata ttttgacctg tcattaactc catttggtca
      901 ataacagcct taatttgaaa tgcaatactt gtaaaaccgg cacgaataat atgccatttt
      961 gtatgttctc gtgtgagacc aagaatctct gctcgtatat ctgtattcca ataaggcgaa
     1021 cctaaaccta attgtccagg aattagcaca acaccctcat tgcatggtaa ttgaaatgct
     1081 cgcttacaag ctgtatcgta atcattaaat agttctaatt gttcggataa aaaaaccaat
     1141 gtgtctccac aagaacgaat aattccttct aacgcaaact ggttcacgcc tgcaacatcc
     1201 caggcaagag ttgtcaaaat agcatcgttt tcaggtaatc tgttctcacc aatttgcatc
     1261 ataacagagc atcctgtccc aagcgtcgcc ttcactgccc caaatgcatc acagccttgt
     1321 ccataaagtg ccgcttctga atcagccatc acactatgaa tcggtatctc ctgataactt
     1381 ccaaaacttc cagcagattg cttcacttct ggtaaataag cacgtttaac tccaaaaagt
     1441 tcgagtaact catctgacca atcatttttt tcaatatcat aaaggagtgt gcggctggcg
     1501 tttgttcggt ctgtgaaata attactatca tccgtaagcg aaaataacaa ccaagcatcc
     1561 attgtgccaa atgccaattg attacgactt gctgcatccc gcaccgcaga actattttcc
     1621 aataaccact tcattttaga agcagaaaaa taagaatcaa ttttcaatcc ggtaagctgt
     1681 ttaattcttt tttcataacc agcttttttt aatgtttcgc aaagttcttt tgttcgatta
     1741 cattgccata caatcgcatt ataaagtggc ttgcctgttt gtttatccca agctacaatt
     1801 gtttcccgtt gattcgtcaa agcaagtcgc tcgatatccg ctggaattaa atcatgtttt
     1861 gccaatatgt ccgcaattaa tgtacggaca ttttgacaaa tttcgattgg attatgctct
     1921 acccagcctt tcttcggata caactgtcga tgctttttat ctaaacgatc tacaagttca
     1981 cctactttaa acaataatac tttcgttcca gatgtgcttt gatcaatagc gatttgatag
     2041 tgtttcttca tcttctttcg tctccaaggt ttttcataac tgtagcaaca ataccagtag
     2101 cagataagcc ataataatca aagatttctt ggctcgttcc agcgatagca ggttcatctg
     2161 gaattcctaa gatcaaatga cgaatacttg ttggcgaact acttaccact tcactcactg
     2221 ctgcacctaa gccaccataa atactatgtt cttctatgct aataagtagt tttgtttcag
     2281 ctaatgccgc ttctactgct ccctggtcaa atggtttgat tgttgaaaaa ttcaatacgc
     2341 gtgcgctgat tcctttcaac ttcaattctt cccttgcatc aagtgcgact cgtaccattt
     2401 caccagttgc taaaattgac acatcgtttc ctttcctaag ggttccagct ttcccaattt
     2461 gaaatactgg tttttctgcg taacaatctt ctaccgcatt tctgccaaga cgaacgtacg
     2521 ccggccgatt tgattgaagc aaatagtcaa aaacagcttc cgtttccaga cgatcagctg
     2581 gtagaatgac ttctaaatta ggaatcgctc tagtaacagc aatatcttga agcgaatgat
     2641 ggctcatacc aagtgcacca taactaacac caccgctgat accaatcaat tttacattcg
     2701 tgtctgagta agccacgtct acttttacct gttcaatact gcgcatactt agaaaacatg
     2761 ctggtgaagc gacaaaagct cgcttgccac tatgtgctaa gcctgctgca attccaacaa
     2821 tattttgttc ggcaatccca gtttcaacta gtcgctctgg aaatttctca gcaaaagccc
     2881 ccagtgaagc ggatcctctt gaatcacttg ttaaaacaac taaattacta tcgttacgag
     2941 ttgcttcttt cattaaaact tcacacatta cttggcggtt cgctatttta ttcatgacgg
     3001 catgcctcca ttctttcctc taaatctttc atagctattt cgtattcctc actgcttggt
     3061 acgtaatgat gccatttagc agcattttca gctattttaa ccccataacc ttttatcgtt
     3121 tttgcaataa ttagacgagg ttttccagtc acattaactg ttttaaaaat cgcttgtagc
     3181 ttatccggat catttccatc cacttcgata acatcccaac caaatgcgcg ccacttatct
     3241 gccaaaggtt ctacactcat tacatcttct gttcgaccgg agatttgtaa ggaattccga
     3301 tcaataatcg cagtcaaatt atctaattta taatttgctg cagccattgc gccttcccag
     3361 acagacccct ctgcaagttc cccgtccccc atgagtgtat aggtgtgata acttttccca
     3421 tccattttag cagctaatgc catacccacc gaaacagata aaccatggcc gagcgaacct
     3481 gtgttcattt caattccagc tactttatta tttggatgcc cgattaaacg cgagccaaat
     3541 gcggagaaat cagccaattc ttcttttgca aaaaaccctt tatctgctaa aactgcccaa
     3601 agaacttcga cagcatgtcc tttactttga acgtaacgat cacgatctaa agcttctgga
     3661 ttttccggat taacattcag cacaccatag taaagcgcca caagaatatc cgcacatgat
     3721 aaatctgaac cagtatgtcc cgtttttgca tcatatatca tttttagaac atcttttcta
     3781 atttcaaacg attttaactt taattcactc atttttactc ctttctctat tcaccgcgta
     3841 aataagcttt tatatcttct tcaattggat catagaggtc tggctttatg ccaatgtatt
     3901 tgcatgcttc ataaagaata gggaccacat ctgcatggat accactaaca tgatgaatat
     3961 atggtcctga aacgattttt tcctctaatc gtttcaaatt atctacctca atccaaagat
     4021 atgttccttt tgtatacgga ccttcaatac ctctcgcttt acccagtaac aaggaatatt
     4081 cgccattatc accatcaaaa cgacataagg ttaattcgcc acctttcgct tccgcttcga
     4141 ctgcaccagg tgaatcaaat gctaacggat agccaattgc cggtttatct tttgcaacag
     4201 aaaacggaaa cagtccacaa tgttgtagca attcaccatt ctcattatct ggatgtctaa
     4261 cagtccaatc tgcaaaaaaa cttttatttc tgcccaaatt tgccgcttcg attaataaac
     4321 aagaaattgc tccatgaata tctgtttcac aaacaactgg aattccttca tctatgagca
     4381 tcgcgtttgc agcgcaaggc ataataccaa tttcatcttg aagtgcagtc caacattgga
     4441 tggcaatcgc actacaacca tattttgttg ctaaattttt catcgcaact ttaagagcag
     4501 caaccattcg taagtcaact tctttaattt taacgattgc acaaccgtga caatattcga
     4561 cggttccatc cacttcctct atttgttcgc tagatacgct acgaatttct tttattaatt
     4621 ctggaagcgg aattggagct aattgaatat tgaatttttc tagcaactct ccttcattac
     4681 acatcgttgt ccaaaaatca aatggccgtg gtccaatttg taaaatccgc atgttttgaa
     4741 atgtttttac cgtattacaa actgcaatga aatctcgaat tcctcgttca aactctggat
     4801 cagatagacg gcaatttgtc atataagtaa atggtacttg aaaccgacgt aagatttttc
     4861 cagttgcaaa caaaccgcac tgcgtatctc gaagtctcac accattttca tcaggtcgtt
     4921 cgtcacgcgg accccaaagc aatactggta catctaactc tttagcaagt ctcgcacaaa
     4981 catattccgt tccaaaatta gtatgtggta aaaacaaacc ttggattcca gcctttttaa
     5041 attttgctgc aattttcatc atatctgcat catcataaag caatccatct tcattaaatt
     5101 ctgcaatgtc cacaaattca atatttagtt cgtttagttt atctcgtgtg agattcgcat
     5161 atttgactgc atctggtgca ctaaatatac ttcgccttgt cggcgcaaac ccaattttaa
     5221 ccgcctccac cttctaacca cctttttagt ttagtaatta ttttagttct cata
//
LOCUS       DASDXX010000170         5261 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.170, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000170 DASDXX010000000
VERSION     DASDXX010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5261
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.170"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            491..2782
                     /locus_tag="U0280_002373"
     CDS             491..2782
                     /locus_tag="U0280_002373"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEM2272297.1"
                     /translation="MKWGLQMTTYIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLE
                     DYKRKVFNFVEKKEDYAADELVDYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASK
                     NRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNG
                     LYLLATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMT
                     VATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRST
                     GAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIESFLDLRLN
                     NGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDESKGEG
                     TFREKYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNPNKHEGM
                     VYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVAEEGT
                     LERLIEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIAWDSEE
                     AEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEYFARRNYNSPEWQELA
                     KEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDLNL
                     STYPYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNE
                     GLKTTYYVRSNDIDVEECEWCSS"
     gene            2838..3887
                     /locus_tag="U0280_002374"
     CDS             2838..3887
                     /locus_tag="U0280_002374"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEM2272298.1"
                     /translation="MANQKEQLTRIKILEPLFPNRSTSIINGETSGILNWNDIPYPSF
                     YRAYKELSTNYWIPDEVDMKSDAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIYNI
                     AEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPTIIKRNE
                     PIMDAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISF
                     INRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETEWSEEVLQGIE
                     GIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRN
                     SSYKKTNMDNGFDDL"
     gene            3884..4321
                     /locus_tag="U0280_002375"
     CDS             3884..4321
                     /locus_tag="U0280_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM2272299.1"
                     /translation="MRILLAYDSLSGNTKMVADEIEEILQSEGHEVVSFRVSPLAEYP
                     LDEDFDLYVLGAWTVDYGRTPPDMKDFIAELAVKPENVAIFGTGETQWGMEFYCGAVD
                     RMAKYFGTSYPTLKIEQMPHTEQDVADIDNWVKKILALRSGIK"
     gene            4318..4644
                     /locus_tag="U0280_002376"
     CDS             4318..4644
                     /locus_tag="U0280_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2272300.1"
                     /translation="MTSIEIKSPEEFQAHINGEELVYVDYWKDNCPNCKMLDLSFAEF
                     KNSEIASKVKVLKVKLEEMGENFFFDRDVQQTPTLVLYKGGEEIHRLNGFIPPNKIEE
                     AVSLNA"
     gene            4753..5052
                     /locus_tag="U0280_002377"
     CDS             4753..5052
                     /locus_tag="U0280_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEM2272301.1"
                     /translation="MKQLQAEITAFLKERDWLDQYNHPKDLAISLSLEAAELLECFQW
                     KTDEIALKENREELLKEVADVLIYALQIAESMGADGEELVRMKLAENRRRTWPKK"
     gene            complement(5095..>5261)
                     /locus_tag="U0280_002378"
     CDS             complement(5095..>5261)
                     /locus_tag="U0280_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272302.1"
                     /translation="GLVLLLIGLIGFGFSFSITGLIGFGVCIISIILVIAGIFAMIRS
                     KKRRKRSYSY"
BASE COUNT         1857 a          871 c         1050 g         1483 t
ORIGIN      
        1 aatggaatga caaaattatc ccgtttgtta actaacaaaa tccagcgtta atcttacatt
       61 tttgtcagaa aggtaacaaa agtgagttta aaagattgtg aagttacaaa acatcctttt
      121 tttaactact aaatatagaa actagcgaaa aaataggcac tagaagtagt agcattttta
      181 tacttgaaat atgctcgaaa acacacaagt gccggaaaaa atttttttat ttgctgaaaa
      241 ccttgttgta atcattgttt agacactttt cgtaataaaa ccagagtact atatcttgca
      301 ttcacaatga aaaagttata ctatatatag tatcgaaagc gaaatattgc ttcatcgcct
      361 tttaactttt atcaggggaa tttgctcctt taaaagttaa tttttttgct ccatggaacg
      421 accacaatag ttcagcggac gaataaaaag cgcaaagtga atcagatatt tttacaacga
      481 ggaaaaaagg atgaaatggg gattgcaaat gacaacttac atagtaaaag acgggggaaa
      541 cagaaagcta ccttttgaca aaagccgatt ggatggatat ttagagaaaa tccatgaaga
      601 atttccgaaa cttgatttgg aggattacaa acgtaaggtt tttaattttg tagagaagaa
      661 ggaagattat gcggctgacg aattagtcga ttatttaatt agggaagcag aagctcgtac
      721 tgatattcat attcctgaat gggaacattt cgcagcacgc ctttatttaa ataaattata
      781 taaaaaagca agtaaaaatc gtttctataa tgatgatgat aaatatggtt cgtacgttgg
      841 actacaagag agtctaggcg aacgtggtat ttattctggc aatattctaa aaaattattc
      901 taaagaagat ttgattgcag cagggaaatt aattgaccct gaaaaagata aattattcac
      961 ttataatggt ttgtatttac ttgcgactcg ttacttagcg actgactctg aacgtaatgt
     1021 gtatgagttg ccacaagaac gttggttaac tatcgcactt tatttaatgc aaaatgaacc
     1081 aaaagaaaaa cggatgaaac tagtagaaga agcttactgg gctttaagta atttatatat
     1141 gactgttgca acaccgacac ttgcaaatgc tggaaaagtt ggcggtcaat tgtctagttg
     1201 tttcattgat actgtagatg atagcttgca aggtatttat gacagtaata cagacgtcgc
     1261 tagagtttct aagcacggtg gtggtgttgg cgcatatctt gggtatgttc gttcaacagg
     1321 agctgctatc cgcggcgtca aaggcgcaag tggtggcgtt attccttgga ttaaacaatt
     1381 aaacaatact gcggttagcg tagatcaatt aggtcaacgt aaaggcgcga ttgcagttta
     1441 tttagatgtt ttccataaag atatcgaatc tttccttgat ttgcgattaa acaatggtga
     1501 ccaacgttta cgcgcacatg atgtattcac tgcagtttgt atccctgata ttttcatgga
     1561 agctgtagaa cgtcgtggcg agtggtattt gtttgatcca catgaagtaa aagcgaaaaa
     1621 aggctggtac ctacaagatt tctacgatga atcaaaaggt gaaggtactt tccgtgaaaa
     1681 atatgaagaa ctagtagcag atgaaacaat tagcaaaaaa attgttaaag ctattgatat
     1741 catgaaacgt attatgatga gtcaattaga aacagggaat ccattcatgt tttaccgtga
     1801 tgaagtaaac agaatgaacc ctaataaaca tgaaggcatg gtgtattcta gtaacttatg
     1861 tacagaaatc atgcaaaata tgagcccaac aaaaatgatt caagaaatta tttctggaga
     1921 tcaaattgtt atcacaaaac aagcgggaga ttttgttgta tgtaacttat cttctgttaa
     1981 cctaggtcgt gcggttgttg ctgaagaagg tactttagaa cgtttaatcg aagtagaagt
     2041 acggatgtta gataacgtta tcgacttaaa cgaactacca gtaccacaag ctactatcac
     2101 gaaccaaaag taccgttcta tcggacttgg aacatttggt tggcaccatc tgcttgctct
     2161 taaaaatatc gcttgggact cagaagaagc ggagaaatat gccgatgaat tatatgaaca
     2221 aattaactat ttagctattc gcgcaagtaa caaactagcg caagaaaaag gtgcttataa
     2281 agtctttaaa ggcagtgatt ggaatactgg agaatacttc gcgcgtcgta actataattc
     2341 acctgaatgg caagaattag caaaagaagt agcagaaaaa ggtttgcgta atgcatatct
     2401 tgtagctgta gcaccaaata tgagtacagc tcaaattgct ggatccactg cttcaatcga
     2461 cccaatttac agtgcattct actatgaaga gaaaaaagat taccgtcgtc cagttattgc
     2521 accggactta aacttaagca catacccata ctacgaaaaa ggtgcttaca aagttgacca
     2581 attcgcaagc gttcgtcaaa acggtcgtcg tcaacgtcac gtagaccaat cactaagctt
     2641 taacttctat gtaccaagtg gtatcaaagc aagtaaacta cttgaactac acatgacggc
     2701 ttggaatgaa ggacttaaaa caacttacta tgttcgctct aacgatatcg atgttgaaga
     2761 gtgcgaatgg tgctcaagct gatacatctc taaaatactt tacacttagt acaaaatgaa
     2821 agggagggct tgcctagatg gctaaccaaa aagaacaact gacacgtatt aaaattttag
     2881 aacctttatt tcctaatcgt tctacttcaa tcataaacgg agaaactagt gggattttaa
     2941 attggaatga catcccgtat ccttctttct accgtgcgta taaagaactt tctactaact
     3001 actggattcc agatgaagta gacatgaaaa gcgatgcaaa acaatatccc gctctttcag
     3061 aacaagaaaa atatgctttt gatgcaatca ttggcttgct agcaacactg gattctccgc
     3121 aaacacgttt tatttataat attgcggaat atattaccga tccagctgtt catgcaaacg
     3181 cagcgattat cgcgcaacaa gaagtcattc ataatgagag ttattcctat gtacttgcat
     3241 ctattaccaa tttacaagaa caaaatcgcg tatttgaact tgcgagaaca catccgacaa
     3301 tcatcaaacg taatgagcca atcatggacg catatgatga cttcatgaat aacaaaacag
     3361 gtgaaacact tgtaaaagca ttaattcaat cttctatttt agaaggaatt aatttctata
     3421 gtggttttgc ttacttctac aatcttgttc gtcaaaataa aatgactgga acagggaaaa
     3481 taattagctt tatcaatcgt gatgaacttg ctcactcgaa gttcatttca gaagtaatcc
     3541 gggcaatcct tggtgaaaac ccagaattac aaacagaaga gctagtagaa tacacacatg
     3601 atgctttccg ccacgctgtt gaacttgaaa cagaatggtc tgaagaagtg ttacaaggta
     3661 ttgaaggtat tgatgtggaa gaaatggttg actacgtgaa atatcgggcc aacaaaatgc
     3721 taggaatgct tggtattcca gaactttatc caggacatag tgataacaca atgacatgga
     3781 ttaaagcata cgcagataac tttacagaaa caaaaaccga ctttttcgaa atgcgcaatt
     3841 caagctataa aaaaacgaat atggataacg gattcgacga tttatgagaa ttttgttagc
     3901 ctatgattct ctaagtggta atacgaaaat ggtggctgat gaaattgaag agattttaca
     3961 aagcgaagga catgaggttg tgtcctttcg cgtatctcct ctagccgagt atccgcttga
     4021 tgaggatttt gacttgtacg tgttgggggc atggacagtc gactacggaa gaacaccgcc
     4081 ggatatgaaa gattttatcg cggaactagc cgttaagccc gagaatgtag ccatttttgg
     4141 tactggggaa acacaatggg gtatggagtt ttattgcgga gctgttgacc gaatggcaaa
     4201 atacttcggc acaagctacc cgactttaaa aatagaacaa atgccacaca cagaacaaga
     4261 tgtggctgat atagacaatt gggtcaagaa aattttagcg ttaaggagtg gaatcaaatg
     4321 acaagtattg aaattaaatc acctgaagag ttccaagctc atataaatgg agaagaatta
     4381 gtatatgtag actattggaa agataattgt cctaattgta aaatgcttga tctttctttt
     4441 gctgaattca aaaactctga aatcgcaagc aaagtgaaag tattaaaagt aaaattagaa
     4501 gaaatgggcg aaaatttctt ttttgaccgt gatgtacaac aaacgccaac acttgtactt
     4561 tacaaaggcg gcgaagagat ccaccgttta aatggattta ttccaccaaa caaaattgaa
     4621 gaagcagttt cattaaacgc gtaatttaat gagagtagca ggtctccttg taaataggtg
     4681 gcttggtgct cattttttta caagtacttg cgatattttt cacaaataaa ttcttctaaa
     4741 ggagttaaaa tagtgaaaca actacaagct gaaattactg cttttctaaa agagcgtgat
     4801 tggctagatc aatacaatca tccaaaagat ttggcaattt cattgtcact tgaagcagca
     4861 gaattacttg aatgctttca gtggaaaaca gatgaaatag cgttaaaaga aaatcgtgaa
     4921 gaacttttaa aagaagtagc tgatgtgctt atctatgctc ttcaaattgc agagagtatg
     4981 ggggcggacg gcgaggaact tgttcgaatg aaattagcag agaatcgtag gagaacttgg
     5041 ccaaagaaat aaaaaaagct gctttaccaa atgatgataa ggcagctttt tattttaata
     5101 agaataagaa cgtttacggc gttttttgga acgaatcatt gcaaaaattc ctgctataac
     5161 taagataata gaaatgatac atacaccaaa accgataagt ccggtaatgc taaacgaaaa
     5221 gccaaaacca atcaaaccaa tcagaagtaa cactaagcca g
//
LOCUS       DASDXX010000171         5242 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.171, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000171 DASDXX010000000
VERSION     DASDXX010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5242
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.171"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(5..1264)
                     /locus_tag="U0280_002379"
     CDS             complement(5..1264)
                     /locus_tag="U0280_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM2272303.1"
                     /translation="MKRFKKVGIVSAVLVMALSLAACGGGKDTSKSGSSDEKTLTVSV
                     DAGYKDYVNKIKGDFEKDNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIG
                     SLGQQGHLAEVKLGNKDDYDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKAPAT
                     FKDLETLSKDSRFAFTSEKGKNTGFLAKWTDFYFSYGLLAGYGGYVFGDEGTNPKDIG
                     LNNKGSVEGITYATKWFQDVWPKGMQDNKSADDFIQDQFVKGKAAAILGGPWSAANYK
                     EAKINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWLDYVTNQKNQETLY
                     DMTNEVPANLKARDTAKSKNDELTNAVIEQYKNAQPMPNIPEMSEVWTGAENLMFDAA
                     SGSKTPQQSADDAVKVIEDNVTQKYTK"
     gene            complement(1477..3252)
                     /locus_tag="U0280_002380"
     CDS             complement(1477..3252)
                     /locus_tag="U0280_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glycosidase"
                     /protein_id="HEM2272304.1"
                     /translation="MEKAGIYHQPASSYAYSYDAKTLHIRIRTKRLDISEVTLIAADP
                     YLWKDGKWQSESYTMRKIAETEEHDYWFFAITPEHRRLQYGFLLTDTEGETTFYGGRG
                     FFEPTEANLATMDYYFKFPFIHAVDTFEAPEWVGNTIWYQIFPERFANGNPAISPENA
                     LPWGSKDPNTTDFFGGDIEGIIEHLDYLAELGINGVYLTPVFEAPTNHKYDTVDYKKI
                     DPHFGDKETFRKLVQEAHKRGIRIMLDAVFNHIGDTSAEWQDVVLNEEKSAYRDWFHI
                     HSFPVRQNENGNIEGEPTLSYDTFAFTTHMPKLNTANPEVQKYLLDIATYWIREFDID
                     GWRLDVANEVDHAFWKEFKKAVQAEKEDIYILGEIWHDSWIWLLGDEFHAVMNYPFTQ
                     TIIENFIEEKITPEQMVSGINEQYMRYPNQVNEVMFNMLDSHDTARILTRANNDEDKV
                     KQALAFMFAHTGSPCIYYGTEIGMDGGNDPGCRKCMEWDETKQNQDMLAFTKQLIALR
                     KDNQAIITSGELTWLGASSETGITAFSKELNGEKLHFLFNQAKEDKDFTISFENTATD
                     IWNNRAVTENLVVPAKGFLVVKENS"
     gene            3510..4145
                     /locus_tag="U0280_002381"
     CDS             3510..4145
                     /locus_tag="U0280_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2272305.1"
                     /translation="MENTLSFKKQGYWLFSSAIIIGVLFLLLPHIISNIGVLEFIGAF
                     FNALCMGVIAFIILKAEFLDWFKHFSFKWILIGAPALIIISSIFNIAWAYFAGSTTEN
                     GINSVLTWSYVFTSIPFMLLGEELLSISLLYAAWKKWNWKFWQASLLCSLLFATWHLT
                     SYDFNFLQCIITLAPARLILNYLFKKTNSIWVTFIVHFIFDFIAFLPILLK"
     gene            complement(4181..5146)
                     /locus_tag="U0280_002382"
     CDS             complement(4181..5146)
                     /locus_tag="U0280_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2272306.1"
                     /translation="MATLADVAKRANVSKMTVSRVINHPDQVSDELKMLVYSAMEALE
                     YVPNYAARALVQNRTQVIKFLILEEIDTVEPYYMNLLTGISRELDKYYYSLQLVTQRS
                     RNIGAYDGLIVTGIRDKDYDLGLLDIDKPVIFYGENKRGYDSIDVDNKKGTALATEHM
                     VEIGFSRIVFLGIDLLDEQFMKSRLEGYEEIVKEHGLEPESYFIANSSSVAEEKAFEL
                     LRYNSEKIAIVCASDRIAIGVVRAAAAFGRRFGENIAVTGFDGVFLDRISSPKITTVQ
                     SPVVEMGEELAKMLLAKINDHGKPQGNLLFTPELLIRASTTGKEE"
BASE COUNT         1474 a         1100 c          825 g         1843 t
ORIGIN      
        1 attattattt agtatatttt tgcgttacgt tatcttcaat tacttttact gcatcatctg
       61 ctgattgttg cggtgttttc gaaccagaag ctgcatcaaa cattaagttt tcagcacctg
      121 tccaaacttc cgacatttct ggaatatttg gcattggttg cgcatttttg tattgttcga
      181 taacagcatt agttaattca tcattttttg atttcgctgt atcgcgtgct tttaagttag
      241 ctggtacttc atttgtcata tcatataaag tttcttgatt tttttggtta gttacataat
      301 ccaaccattt ttgagctaca tctttgtttt tagaatagtt acttacaacc caacctttac
      361 cgcctgcaaa tggagagtat tctttgccat tgtttagtgt cgggattttt gctacgccgt
      421 aattaatttt tgcttctttg tagtttgctg ctgaccatgg accgcctaga attgctgctg
      481 ctttaccttt aacaaattga tcttggataa agtcatctgc actcttattg tcttgcatac
      541 cttttggcca tacatcttgg aaccattttg ttgcataagt aattccttca accgaacctt
      601 tattgtttaa accgatgtct tttggattcg taccttcatc gccgaataca taaccgccgt
      661 atcctgcaag tagtccgtaa gagaagtaga aatcagtcca ttttgctaag aaaccagtat
      721 tttttccttt ttcagaagtg aaggcaaaac gagaatcttt agaaagtgtt tctaaatctt
      781 tgaaagttgc tggagctttg tcgagtaaat ctttattata gtaaagtact agagtttcaa
      841 taattgctgg agcgccataa attttatcgt caatggttac ttgtttttgg tctttttcat
      901 cgtaatcgtc tttatttcca agttttactt ccgctaaatg tccttgttgg cctaagcttc
      961 caattctatc aaatgcggac atcattacgt ctggagcagt tccagccggg ccatcaagtg
     1021 gcaatgcttc taatgtttcg aacatgtctt tttcgactac ttttactttc acgtcattat
     1081 ctttttcaaa atcacctttt attttgttca cgtagtcttt gtagcctgcg tcaacggaaa
     1141 ccgttaatgt tttttcatca gatgagccag atttactagt gtcttttcca ccaccacatg
     1201 ctgctaagct taaagccatt actaaaaccg ccgaaactat tcccactttt ttgaaacgct
     1261 tcatttactt ttcctcctct ttatgaaaaa agtcgccctt tactgtctga tttctaagtc
     1321 cccatctttt ttcaattctt tttaaagttt gtgaattagg ttaacctatg catttattat
     1381 atgctgattt cgaaagcgtt tacaaggaga tttcacatgt taccgataac aacatttttt
     1441 cggtaaacat gtgaaaaatt cctttacgcc attgatttag ctgttttctt taacaacaag
     1501 aaatcctttt gctgggacaa caagattttc tgttacagct cggttgttcc aaatatctgt
     1561 cgctgtattt tcaaatgaaa ttgtgaaatc tttatcttct tttgcttgat tgaaaaggaa
     1621 atgcagtttt tcaccattta attctttaga aaatgctgta atgcccgttt cgctacttgc
     1681 acctagccaa gttaattcgc cggatgtgat aattgcttgg ttatcttttc ttagggcaat
     1741 taattgtttc gtaaacgcta gcatatcttg gttttgcttc gtttcatccc attccataca
     1801 cttacggcaa cctgggtcat ttcctccgtc catgccgatt tcagttccgt aataaataca
     1861 cggcgaacca gtgtgcgcga acatgaaggc aagcgcttgt ttcactttat cctcatcatt
     1921 attagcacga gttaaaatac gcgccgtatc atggctatca agcatattaa acattacttc
     1981 attcacttga tttgggtagc gcatatattg ttcattaata ccagaaacca tttgctccgg
     2041 tgtgattttt tcttcaataa agttctcaat aatcgtttgt gtaaatggat agttcattac
     2101 ggcgtggaat tcatctccaa gtaaccaaat ccacgaatca tgccaaattt caccaagaat
     2161 ataaatatct tctttttccg cttggacagc ctttttaaat tctttccaga aagcatgatc
     2221 tacttcatta gcaacatcta agcgccaacc atcaatgtca aattcgcgaa tccagtaagt
     2281 tgcaatatcc agtagatact tctgaacttc tgggttagcc gtatttaatt ttggcatatg
     2341 cgtcgtgaaa gcaaatgtat cgtaagaaag tgttggttct ccttcaatat tgccattttc
     2401 attttgacga acagggaaac tatggatgtg gaaccaatca cgatatgcag atttttcttc
     2461 atttaagaca acatcttgcc actctgctga agtatcgcca atgtgattga acaccgcatc
     2521 taacataatg cgaatcccac gtttatgcgc ttcctgaact aattttctaa acgtttcttt
     2581 atctccaaaa tgtggatcaa tttttttata atcaaccgta tcgtatttat gattggttgg
     2641 tgcttcaaac acaggtgtca aataaacccc attaatacca agctctgcta aataatctaa
     2701 atgctcgata attccttcta tatccccgcc gaaaaagtct gttgtgttcg gatctttact
     2761 tccccacggc aaggcatttt ccggagaaat agccggattc ccatttgcaa aacgttctgg
     2821 gaaaatctgg taccaaatag tattcccaac ccattcaggc gcctcaaaag tatccaccgc
     2881 atggataaat ggaaatttaa agtaataatc catcgtagct aaattagcct cagttggctc
     2941 aaagaaacca cgtccgccgt aaaatgttgt ttctccttct gtatctgtta gtaaaaagcc
     3001 atattgaaga cgtctatgtt ctggtgtaat tgcaaaaaac caataatcgt gctcttctgt
     3061 ttctgcgatt ttgcgcattg tataagattc actttgccat tttccatctt tccataagta
     3121 agggtcggca gcaattagag taacctcgct aatatccaag cgtttcgttc taatccgaat
     3181 atgtagtgtt ttagcgtcat aactataagc atagctactc gctggttgat gataaatccc
     3241 tgctttttcc attttttctc ctcctatatc acctatcgtt ctatttcaaa ttagcatttc
     3301 cattaaagcg tttgcaacct tttctcgctc gttaacggta acaagatttt ctaactattt
     3361 catattcttt caacataata tagaagaaag ccaattctcc ctcctccttt aaagtgacaa
     3421 attagtaact ttactgattt aaagtaaaga gctataataa ctcatggact aatgaaatct
     3481 atcgaaaaaa ggtctaaaag gaggataaaa tggaaaatac tttaagcttt aaaaaacaag
     3541 ggtattggtt attttccagc gcaatcatta ttggtgttct ttttcttctt ttgccacaca
     3601 tcatttccaa tattggagtg ttagaattta taggtgcttt ttttaacgcc ctatgcatgg
     3661 gggttattgc ttttatcata ctaaaagcag aattcctcga ttggtttaaa cattttagtt
     3721 tcaaatggat cctcatcggt gctccagcat taattattat cagctctatt ttcaacattg
     3781 cttgggctta cttcgcgggc agtactactg aaaatggtat caacagtgta cttacatggt
     3841 cttacgtttt cacaagcatc ccgttcatgc ttcttggcga agaactacta tccattagct
     3901 tactctatgc cgcttggaaa aaatggaact ggaaattctg gcaagcttcc ttgctctgct
     3961 cgttactatt tgcgacgtgg catctgactt cctatgattt taacttctta caatgtatca
     4021 ttactttagc acctgctaga ctcattttga actacttatt taagaaaaca aactcgattt
     4081 gggttacttt catcgttcac ttcatttttg atttcatcgc atttttaccc attttactca
     4141 aataaaaaaa cgctaggaat aaagattcct agcgttttta ttactcttct tttccagttg
     4201 tagaggctct tatcagtaat tcaggagtaa ataataggtt tccttgaggt tttccgtgat
     4261 cattaatttt cgcaagtaac atcttcgcga gttcttcccc catttcaacg acgggagatt
     4321 gaacagttgt aatttttggc gatgaaattc tatctaaaaa aacaccatca aaccctgtta
     4381 cagcaatatt ttcaccaaaa cggcgaccaa aagcagcggc agcacgaaca accccaatgg
     4441 caattcgatc tgatgcgcaa acaatcgcaa ttttttctga gttatagcgt agtaattcaa
     4501 atgctttttc ttccgcgaca ctggaactat tcgcaataaa ataactttcc ggttccaaac
     4561 catgttcttt cactatttct tcatagcctt ctaggcgcga tttcataaac tgttcatcta
     4621 ataaatcaat tcccaaaaag acgattcgcg aaaaaccgat ctctaccata tgctctgttg
     4681 cgagcgcagt ccctttttta ttatctacat caatagaatc atagccacgt ttattttcac
     4741 cataaaaaat aactggttta tcaatatcta aaagtcctaa atcataatct ttgtcgcgta
     4801 ttcccgtgac aataagcccg tcataagctc cgatattcct ggatctttgc gtaacgagtt
     4861 gaagcgaata gtagtattta tctaactccc gactaattcc tgttaataaa ttcatataat
     4921 atggttcaac tgtatcaatt tcttctaaaa tcaaaaattt aataacttgc gtcctatttt
     4981 gaacaagcgc ccttgcagca taatttggta catactctaa ggcttccatt gcactataaa
     5041 caagcatttt cagttcatct gagacttgat ctggatgatt aataacccgt gaaactgtca
     5101 ttttggagac atttgcccgt ttcgcaacat ctgctaaagt cgccatctcc aacctcctcc
     5161 attcataatc ttccttattg taccatcttt tacacaaaaa aaaataagaa ttaacccaca
     5221 aaaaaagcat tctcattaaa ag
//
LOCUS       DASDXX010000172         5233 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.172, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000172 DASDXX010000000
VERSION     DASDXX010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5233
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.172"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..537
                     /locus_tag="U0280_002383"
     CDS             <1..537
                     /locus_tag="U0280_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272307.1"
                     /translation="IYSRAKKFIRTRYQLRSFAELTTMRRYLLYAYLEKSGFSTRADL
                     EKLIRFIHSEMAEEKKNYQPLSTVVGVFIAAFLAILGGTFLFLMDDVVERLIAAVLIM
                     VMAILLYIVGTFIMSIIRSKSENNTKKERVLTKEIIAIQTAMLVSENTSYHPFLAMER
                     KIAENDFLKEIITSRSFL"
     gene            573..1220
                     /locus_tag="U0280_002384"
     CDS             573..1220
                     /locus_tag="U0280_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2272308.1"
                     /translation="MTTKRKETRESVCYREIKKKIRNGELKPGDRLIENTLSQQLEIS
                     RTPIRKAIGMLAADGYVEYNDFRGAFVRDSIINKERYFEMTEIIGLFLKQAIQKIRTK
                     KIAFNKMRVVAKLVEIEREQPTDPATYFEYEKWFVSDLLTYMKNNYYLKISDDFFNNI
                     QEFGDEEVIKIAQNACVKTIANIQRFIDALDVQDYDKCIAIIDQVIDAHVLVAYR"
     gene            complement(1261..2250)
                     /locus_tag="U0280_002385"
     CDS             complement(1261..2250)
                     /locus_tag="U0280_002385"
                     /EC_number="1.3.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acryloyl-CoA reductase"
                     /protein_id="HEM2272309.1"
                     /translation="MKSFQALFIEKEADNTSLHFRETTIDNLPENEVTIEVHYSGINY
                     KDGLAVLPDGKIVSEYPFIPGIDASGVVVHSKSDQFQVGDEVIVTSYDFGVSYFGGYS
                     EFIRVPAAWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTPDAGKIAVSGATG
                     GVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVLREAFQPEKVRALDKQLYA
                     GAIDCVGGKPLSYLLTAVQYGGAVTTCGMSAGGKLDTTVFPFILRGIQLFGIDSVLCP
                     MPKRERIWNRLATDFKLTNLESLVTEVGFSELPEALHQVMNGGVTGRYLVKIK"
     gene            2429..3358
                     /locus_tag="U0280_002386"
     CDS             2429..3358
                     /locus_tag="U0280_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM2272310.1"
                     /translation="MGKALLIVNPSSGKEKGKTYQGKTEEVLKKRYDEVEVRLTEKAG
                     DATEFASWAAEQGFEAVIAMGGDGTLNETINGLAIHEKRPDFGFIPLGTVNDLARSVG
                     IPLKPEKAIQALEKAIAVPMDIGRIGDQYFMNVLAIGMIAQAVDQVSVEQKTKFGSVA
                     YFLEGLKAFNRNELLHFKIEYDEEVWEGEAALVVAGLTNSVGGMESWAPDAKIDDGYL
                     HIIILTKLGLLDAANMIPQLIRGNLKNSDGVVYIKTKKLTIDASGDDLSINVDGDPGP
                     GVPAEIEVLGSHLNILAPKKSSKKRFGPFILKK"
     gene            3398..3730
                     /locus_tag="U0280_002387"
     CDS             3398..3730
                     /locus_tag="U0280_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272311.1"
                     /translation="MEEELEVIHKGLANAKNGFKAVPGKLYLTATYIVHKPNDYFDEE
                     INIPLNRVAKIRGVRTKILGKELLSNILEIDMISGVKYQFVVNKQKKWLEAVSEVLES
                     RGESEKLG"
     gene            complement(3768..4634)
                     /locus_tag="U0280_002388"
     CDS             complement(3768..4634)
                     /locus_tag="U0280_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2272312.1"
                     /translation="MTILAFDLGGTAVKFGVLTTAGEILEKGKFKTPDNLDEMLQSLM
                     DVKANYDYTFQGAAFSCPGAVNNETGIIGGASAIPYIHNFPFKQLLEEKLGLPVTMEN
                     DANCAALAEVWIGAAKDKQDIIFMILGSGVGGAVIRGGKVHHGANLHGGEFGYMLMDR
                     DGRTLSELGTVVNAATRIAERLEVPKASIDGLRAFELRAEGNKIAKEELDTMFYYLAR
                     SIFNLQYALDPELVVIGGGVSERADFIQELTEYVAKVKASVPIATISPTVVGCHFGND
                     ANLIGATAFHLA"
     gene            4793..5176
                     /locus_tag="U0280_002389"
     CDS             4793..5176
                     /locus_tag="U0280_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272313.1"
                     /translation="MEIKVQKKLTDGRIAFSSEYGECVGIWADEDPEPSRVYTVEITI
                     PDMISAELLHESEEKHCALEIDEEGLVHVIGKLEDYEEDGFAVLRLEESIICFDTKFS
                     EEIEMLHGRFVEFVIPEIKLSNVGI"
BASE COUNT         1735 a          983 c         1028 g         1487 t
ORIGIN      
        1 atttacagtc gagctaagaa attcatcaga acacggtatc aattgcggag ttttgctgaa
       61 ctaacaacca tgcgccgcta tttattatat gcttatttag aaaaaagtgg ttttagtaca
      121 cgagctgatt tggaaaaatt aattcgtttt attcattctg aaatggcaga agaaaagaaa
      181 aattatcaac cactcagtac tgttgtgggc gtttttatag cagcattttt agcaatttta
      241 ggcggtacat ttctattttt gatggatgat gtggtggagc ggcttatcgc agcggttcta
      301 atcatggtaa tggcaatttt actttatatt gtaggcactt ttattatgtc gataattcgc
      361 tctaaatcag aaaataatac gaaaaaagaa cgggtattaa caaaagaaat tatagcaatt
      421 caaacggcaa tgcttgttag tgagaatact agttaccacc catttttagc gatggagaga
      481 aaaatagctg aaaacgattt tttgaaagag attattacat cacgatcctt tttataaaca
      541 caaggttata gacatattta ggaggcagaa taatgacaac caaacgcaaa gagactagag
      601 aaagtgtttg ttatcgggaa atcaaaaaga agattagaaa cggggaacta aagccaggcg
      661 atcgtttaat tgaaaataca ttatcacaac aattagaaat tagtcgtacg ccgattcgaa
      721 aagcaatcgg gatgcttgct gcagatggat atgtggaata caacgatttt cgaggtgctt
      781 ttgttcggga cagcattatt aataaagaac gttactttga aatgacagaa attattggtt
      841 tgtttctaaa acaagctatc caaaaaatcc gtacaaaaaa aatagccttc aataaaatgc
      901 gagttgttgc aaaattagtc gaaattgaac gcgaacaacc aaccgaccca gcaacttatt
      961 tcgaatatga aaaatggttt gtgagtgatt tactaaccta tatgaaaaat aattactatt
     1021 tgaaaattag cgatgatttt tttaataata ttcaagaatt tggtgatgaa gaagtcatta
     1081 agattgcaca aaacgcttgt gttaaaacaa tcgctaacat ccaacgtttt attgatgcgt
     1141 tggatgtaca agattatgac aagtgcatag cgattattga tcaagtcatt gatgcccatg
     1201 ttttagtcgc ttatcgttaa aaaagcattg tccttactac ttaaggacaa tgctttttat
     1261 ttattttatt ttcactaaat atctaccagt cacgccaccg ttcattactt ggtgaagagc
     1321 ttcaggtaac tcagaaaagc ccacttctgt tactaagctt tctaaattag ttaatttgaa
     1381 atctgtcgca agtctattcc aaattcgttc tcgttttggc atcggacata aaactgaatc
     1441 aataccgaat aattgaatac cacgcaaaat aaatggaaag acagttgtat ctaattttcc
     1501 accagcagac ataccgcatg tagtaactgc cccgccatat tgaacagctg ttaggaggta
     1561 tgaaagaggt tttccaccaa cacagtcaat ggccccggcg tatagttgtt tgtctaatgc
     1621 gcgcactttt tcaggttgaa aagcttctct taaaactatt tcagatacac cgaatttttc
     1681 taggaattcc tttgcatcgc tttttccaga agaagctaca acagagaagc ctcgtttgga
     1741 aagtatggct gagcttaaac tacctacacc gcctgttgca ccacttacag cgatttttcc
     1801 agcatcgggt gttacgccac taaattcaag cgcatcgacc gagagtgctg ctgtaaagcc
     1861 cgctgtgcct agtatcatcg cttcttttaa tgatagacca tctggcaaag gaacaaccca
     1921 agcagctgga acgcgaataa actcactata tccaccaaaa tagctcactc caaaatcata
     1981 actagtgaca ataacctcat cgcctacttg aaattggtca gatttagaat ggacgaccac
     2041 accacttgca tcaataccag gaataaaagg atactcgctc acaattttcc cgtctggaag
     2101 tacagccagt ccatctttgt agttaatacc agaataatgt acctcaatcg ttacttcatt
     2161 ttctggcaag ttatctatag tagtttctct aaaatgaagg gaagtattat ctgcttcttt
     2221 ttcaatgaaa agtgcttgaa atgatttcat tttttaaatt cctccacaac tcaattttgt
     2281 gttccccttc actttacgac ttttttcgcc attttacaag gctgtgactg gtacaaatcc
     2341 ccatttcaag gtaaactaga atagagaaga tgccgatatt ttgtgtaaat ttataaatag
     2401 aattttttgg caagaaaggg tgagtgcgat ggggaaggca ctattgattg tgaatccatc
     2461 atcaggtaaa gaaaaaggaa aaacttatca aggaaagaca gaagaagtac taaaaaaacg
     2521 ttatgatgag gtggaagttc gcctgactga aaaagcaggg gatgcaacag aatttgcttc
     2581 ctgggctgct gaacaaggct ttgaagcagt aattgcgatg ggcggagacg ggactttaaa
     2641 tgaaaccata aacggacttg caatccatga aaaacgacct gactttggct tcattccact
     2701 tggaacagtc aatgatttgg ctcgttcggt aggtatacca ttaaaacccg aaaaagcgat
     2761 tcaagcatta gaaaaagcta ttgcagtgcc gatggatatt ggccggattg gcgaccaata
     2821 ctttatgaac gtcctagcta tcggtatgat tgcgcaagct gtcgaccaag ttagcgtcga
     2881 acaaaaaacc aaatttggct ccgtagcata ctttttagag ggcctgaaag catttaaccg
     2941 caatgaatta cttcatttta aaatcgaata tgacgaggaa gtttgggaag gggaagctgc
     3001 gctagttgtg gctggcttaa ctaattcagt tggtgggatg gaatcatggg cgccagatgc
     3061 aaaaattgac gatggctacc tgcatattat tattctaacg aaacttggct tgcttgatgc
     3121 agccaatatg atcccgcaat taattcgcgg taatttaaaa aacagtgacg gtgtagttta
     3181 tattaaaacc aagaaactta ccattgatgc aagtggagac gatttaagca tcaacgtcga
     3241 tggcgaccca ggtccaggtg taccagcaga aatcgaagtg cttggcagtc acttgaatat
     3301 ccttgcaccc aaaaaaagca gcaagaagcg cttcggccca ttcatactta aaaagtaacc
     3361 tacaataatt gtagaagaat aaggagatga aagctttatg gaagaagaat tagaagtcat
     3421 tcataaaggt cttgccaatg cgaaaaatgg ttttaaagca gtccccggaa aactttattt
     3481 aacagcaacg tatattgtcc acaaaccaaa tgattacttt gacgaagaaa tcaatattcc
     3541 gctgaatcga gtagcaaaaa ttcggggtgt ccgcaccaaa atccttggaa aagaattact
     3601 ctccaacatt ttagaaatag acatgatatc cggagtaaag taccaattcg ttgtaaacaa
     3661 acagaaaaag tggctggaag cagtttctga agtattagaa agccgcggtg aatcagaaaa
     3721 attaggatag aaagaagctg gcacgaaaaa agtgaccagc ttctttttta tgctaaatga
     3781 aatgcagttg caccaatgag attggcatca tttccaaagt gacagccaac aacagtaggg
     3841 ctaatagtcg caattggtac agacgctttt actttcgcca catattcggt caactcttga
     3901 ataaaatcag cccgctcact tacaccacca ccaatgacga ctagttcagg atcaagtgcg
     3961 tactgcaaat taaatatact tctcgcaaga taataaaaca tcgtatctag ctcttctttt
     4021 gcgattttat ttccttccgc acgtaattca aatgcccgaa gaccgtctat actagctttt
     4081 ggaacttcta aacgctcggc tattctcgtc gcagcattta cgactgtacc aagctcgcta
     4141 agtgtgcgtc cgtcgcggtc catcaacata taaccaaatt caccaccatg caaattggcc
     4201 ccgtgatgta ccttgccacc gcgaataact gcgccaccaa ctccacttcc aagaatcata
     4261 aaaataatat cttgcttgtc tttcgccgcg ccaatccaaa cctctgctaa agctgcacag
     4321 ttggcgtcat tttccatcgt aacaggaagc cccagttttt cttcaagtaa ttgtttaaaa
     4381 gggaaattat gtatgtaggg gatggcactc gcgccgccaa tgataccggt ttcattatta
     4441 accgcacctg gacaactaaa cgcagctcct tggaatgtat aatcgtaatt tgcttttaca
     4501 tccataagcg attgcagcat ttcatccaaa ttatccgggg ttttgaattt acctttttct
     4561 agaatttctc cagctgttgt taacacgcca aacttcactg ctgttccacc taaatcaaat
     4621 gcaagtatcg tcattaccca atctcctttt taatagaaaa gtatatactt atcatacttt
     4681 taaacaatac aaatgacaaa taaaaagtga aaatactttg ctaaaaatta acgtcctttt
     4741 ctattttgtg ctataataaa gcaagaattt gaagcgcagg aggaaatggt tagtggagat
     4801 aaaggttcaa aagaaattga ctgacggcag aatcgctttt agtagtgaat atggtgaatg
     4861 cgttggtata tgggccgatg aagacccaga accaagtagg gtttacacag tagaaattac
     4921 aataccggac atgattagcg cagaactgct acacgagagt gaagagaaac attgtgcatt
     4981 agaaatagac gaagaaggct tagttcacgt aattgggaag ttagaggatt acgaggaaga
     5041 tggctttgca gtgctccgct tagaagaaag tattatttgt tttgacacga aattcagtga
     5101 agaaatcgaa atgctccatg gaagatttgt tgaatttgtt attccggaaa taaaattaag
     5161 taatgttggt atatagattg aaatgaaaga ggcaggaaac agatagtgag agtttcctgt
     5221 cttttttttg tta
//
LOCUS       DASDXX010000173         5220 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.173, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000173 DASDXX010000000
VERSION     DASDXX010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5220
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.173"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..384
                     /locus_tag="U0280_002390"
     CDS             <1..384
                     /locus_tag="U0280_002390"
                     /inference="COORDINATES: protein motif:HMM:NF018914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain protein"
                     /protein_id="HEM2272314.1"
                     /translation="NNLTSELEERERRAAAEIPIDLNVSPLITYEGSLGLLNTFQRED
                     LFHWESELSRPIVNFAIYHASMRGARGYPLIKDILCKWHQNNIKNLSEAVAFEKEQKS
                     KAQIKGGAYVRGGKRTNQQNQNFDW"
     gene            332..1153
                     /locus_tag="U0280_002391"
     CDS             332..1153
                     /locus_tag="U0280_002391"
                     /inference="COORDINATES: protein motif:HMM:NF013828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM2272315.1"
                     /translation="MSVEENEPINKIKISTGDREPLTFGNIQFVENRTCRDCGNEYPV
                     YSRNGIEADFCINCDNNRVQKDMQKRYEETERQRPNRLMKEFSFVPDEIKSQSFKTFK
                     PETTEEHEALQQVLHFVKSFPNDQTLVLAGSVGTGKTHLAYSAAREIIKKGYIVIFVT
                     VPELLESIRSTFKNADLSETEVKRIYKEADLLILDDIGAEYIKDYGNGSWAAEIIFDI
                     VNARTTKSTIYTTNLAGKDIEEHYGGIQGKRIVSRMKKNSTAIKLTGKDRRTSEW"
     gene            1153..1344
                     /locus_tag="U0280_002392"
     CDS             1153..1344
                     /locus_tag="U0280_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272316.1"
                     /translation="MVEATQVEYIGFSGPEAAHVIIWKLLDKKIAKTMCYTAEEVEEQ
                     LKLHAWKFDGYEVLSDENF"
     gene            1331..1552
                     /locus_tag="U0280_002393"
     CDS             1331..1552
                     /locus_tag="U0280_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272317.1"
                     /translation="MKTFKIWLKIYWISGLCQNRSFEVEARTFKEAFDNAEKMVPRKK
                     VKKIKHLQGDIVGYIFEPPTKGANNFETN"
     gene            1509..1748
                     /locus_tag="U0280_002394"
     CDS             1509..1748
                     /locus_tag="U0280_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272318.1"
                     /translation="MSRQRKELIILKRIEYVEIIKKIPGTPFRLGGIYEIERMGSANA
                     RVRINNSIYQVPKEALQVVEQVERERWEENDKIHD"
     gene            1729..2166
                     /locus_tag="U0280_002395"
     CDS             1729..2166
                     /locus_tag="U0280_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HEM2272319.1"
                     /translation="MIKFTINIPPHPQERPRFRNAGNFVQTYDPPKSKEYKKKIANVA
                     KMYAPGTPISTPIKIKLIFFVPIPKSKSKAWKQRAVLGQEFPAVRPDIDNFTKAVLDA
                     LNGIMFSDDGKIVELIAYKRYSDLPRTEVSITELVSEVQTKLF"
     gene            2187..2807
                     /locus_tag="U0280_002396"
     CDS             2187..2807
                     /locus_tag="U0280_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272320.1"
                     /translation="MINCYAEVRNVQVKPNDTVEIKLVVGVEELSGQNEELMKLVGRE
                     VNTSLESNQISYREKVDPETREPVLKYIVHKDGTVAMYSQEKLDLELEELPEEERSSV
                     INKSEIDEYILACDSGPMTIPGGIFEGKEVLQKLSEGEDIEDLAKFYGTPVKEMQDTL
                     DEYRKFVAAKAKAWQEWKNNSEQTADSEEQESENDGQATLEFETEE"
     gene            2848..3228
                     /locus_tag="U0280_002397"
     CDS             2848..3228
                     /locus_tag="U0280_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272321.1"
                     /translation="MPSEELNLFDLMDYYPEQAAKKKRKEEALKPIKTHRNDRIDYPA
                     ARAEIERILGKKVTTVCGYYDHPINKELRWIFNFEIGFCYINDKCQLYEMQPGLEGFR
                     YRGKVHEEVFYNADDRKRATTTIE"
     gene            3188..3364
                     /locus_tag="U0280_002398"
     CDS             3188..3364
                     /locus_tag="U0280_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272322.1"
                     /translation="MQTIEKELLQRLSDRRIGVQHQIASLVHTEKCTLLEALKMTDKE
                     IDSTFNEMRMELDS"
     gene            3376..3798
                     /locus_tag="U0280_002399"
     CDS             3376..3798
                     /locus_tag="U0280_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272323.1"
                     /translation="MTTVEKLSIREQALNKMLTEMNEAHSGAEDVIHNWLCNQVEEAI
                     FEGIMKDDRSISGAVKYCSSRASKHQAEGVAMIDDKTVFSWVRKYFISEKVSKSIVKA
                     TVKATATKPEKTKVKAKKKPKKTTAQEGYEQLDLLDFL"
     gene            3795..5156
                     /locus_tag="U0280_002400"
     CDS             3795..5156
                     /locus_tag="U0280_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HEM2272324.1"
                     /translation="MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNR
                     KNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLV
                     NFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKY
                     LEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTIN
                     AKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVR
                     FQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEV
                     EEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKT
                     TIIFVRDKQDLEKSFYTLEYKNGQIYQLRGKHNCDPTKDVQEAANKWAKLLKSKTKVL
                     QHS"
BASE COUNT         1972 a          778 c         1153 g         1317 t
ORIGIN      
        1 aataacttaa ctagtgaact agaagaaaga gagcggcgag cagcagcaga aatccctatt
       61 gatttaaatg tatctccctt aatcacctac gaaggtagtc taggtctatt aaatactttt
      121 caaagagagg atttatttca ctgggaatcg gagttaagtc gaccgatagt caattttgct
      181 atttaccacg caagtatgag aggcgcacgt gggtatccgt tgataaaaga catcctgtgc
      241 aaatggcatc aaaataatat aaaaaatctt tcagaggctg tcgcatttga aaaggaacaa
      301 aaaagtaaag cacaaataaa aggtggtgct tatgtccgtg gaggaaaacg aaccaatcaa
      361 caaaatcaaa atttcgactg gtgatagaga gccactgact ttcggaaaca tccaatttgt
      421 agaaaatagg acttgtaggg attgtggaaa tgaatacccc gtttactcaa gaaatggcat
      481 tgaagcagat ttttgcatca attgtgacaa taatcgagtt caaaaagata tgcagaaacg
      541 ctacgaagag acagagagac agcgacctaa cagactgatg aaagaatttt ctttcgttcc
      601 tgatgagatc aaatcgcaat cttttaaaac atttaaacca gaaacgacag aggagcatga
      661 agctttgcaa caagttcttc attttgtaaa gtcatttcct aatgatcaga ctttagtgct
      721 agctggttct gtaggaactg gtaaaactca tttagcatat tctgcagcaa gagaaatcat
      781 aaaaaaaggt tacatcgtca tttttgttac cgttccagaa ttgttggaaa gtattcgttc
      841 cacttttaaa aacgcagacc tttcagaaac ggaggtaaaa cgaatttata aagaagctga
      901 tttactgatt ttagacgaca ttggggctga atatattaaa gactacggaa acggtagctg
      961 ggcagcagaa ataatattcg atattgtgaa cgctcggaca acgaagtcga cgatttacac
     1021 tacaaatttg gcaggaaaag atattgagga acattacggt ggcattcaag gaaaacgaat
     1081 tgtatcccgt atgaagaaga atagtacagc aataaaatta actggcaagg ataggaggac
     1141 aagtgaatgg taatggttga agcaacacaa gtagaatata ttggcttttc tggtccggaa
     1201 gcggcgcacg ttattatctg gaagctatta gacaagaaaa tagcgaaaac gatgtgctac
     1261 acggccgaag aagtcgaaga gcagctaaag ctgcacgctt ggaaatttga tggttatgag
     1321 gtcttgagtg atgaaaactt ttaagatctg gctgaaaatc tactggattt ctggcctttg
     1381 tcaaaataga agttttgagg tagaagctag aactttcaaa gaagcatttg ataatgcaga
     1441 aaaaatggtt ccacggaaaa aagtgaagaa aataaaacat ctgcagggag atattgtagg
     1501 ttacattttt gagccgccaa cgaaaggagc taataatttt gaaacgaatt gagtacgttg
     1561 aaatcattaa aaaaattccc gggacacctt ttagattagg agggatatac gaaatagaac
     1621 gaatgggttc agcaaatgca cgtgtgagaa ttaacaacag tatttatcag gtgccaaaag
     1681 aagcactaca agtagttgaa caagtggaac gtgaacggtg ggaagaaaat gataaaattc
     1741 acgattaata ttcctccaca tccacaagaa cgaccgcgtt ttagaaatgc aggcaatttc
     1801 gtacaaacgt acgacccgcc taagtcaaaa gagtacaaaa agaaaatagc aaatgtggca
     1861 aaaatgtatg cgccaggaac gccaataagc acgcctatta aaataaaatt aattttcttt
     1921 gtgccaatcc ctaaatcaaa atctaaagcc tggaagcagc gagcggtcct tggccaagag
     1981 tttccagctg taaggccaga tattgataat ttcacaaagg ctgtgctaga cgcattaaac
     2041 ggcatcatgt ttagtgacga tggaaagatt gttgaattaa tcgcttataa gagatattca
     2101 gacttaccta gaacggaagt tagcataaca gaattagttt cagaagttca aacgaaatta
     2161 ttttaaaaaa attggaggaa caagaaatga ttaattgcta cgcagaggtt agaaatgtac
     2221 aggtgaaacc gaatgacacg gttgaaatta aactagttgt tggtgtagaa gaattatctg
     2281 gccaaaacga ggaacttatg aagctcgtag gtagagaagt aaatacttct ctcgaaagca
     2341 accaaatatc ttaccgtgaa aaggttgatc cagaaacacg agagcctgtt cttaagtata
     2401 ttgttcacaa ggacgggact gtagcgatgt actcgcagga aaagcttgat ttagaattag
     2461 aagaattgcc cgaagaagag cgttctagcg tgataaacaa atcagagatt gatgaatata
     2521 ttctcgcttg tgatagcgga cctatgacca ttcctggagg gatttttgaa gggaaagaag
     2581 tgcttcaaaa attatcagag ggtgaagaca tagaggattt ggctaagttt tatggaacgc
     2641 cggttaaaga aatgcaagac actttagatg aatatcgtaa attcgtagct gccaaagcaa
     2701 aagcgtggca agaatggaaa aataattctg aacaaacagc tgatagtgaa gaacaagaat
     2761 ctgaaaatga tggtcaagca actttagagt ttgaaaccga agaataaaat gctgggcggg
     2821 aaaccgccct tgtaaagagg tgaggaaatg ccatcagaag aattaaattt attcgattta
     2881 atggattact atcctgagca ggctgctaaa aaaaagcgaa aggaagaagc cttaaaaccg
     2941 attaaaactc atagaaacga tagaatagat tatcctgcgg caagagccga aatagagcgg
     3001 attttaggta agaaagtaac tacggtttgc ggatattatg atcaccctat taataaagaa
     3061 cttcgttgga ttttcaattt tgaaatagga ttttgctaca tcaatgataa atgtcaacta
     3121 tacgaaatgc aaccgggttt agaagggttt cgatatcgcg ggaaagtaca tgaggaggtt
     3181 ttctataatg cagacgatag aaaaagagct actacaacga ttgagtgata gaagaatagg
     3241 agttcaacat cagattgctt cacttgtgca tacagagaag tgcacgttgc tagaagcttt
     3301 aaaaatgaca gataaagaaa tcgattcaac atttaatgaa atgcgaatgg agctagatag
     3361 ttaggaggat gaataatgac aactgttgaa aagttaagca taagagagca agcgctcaat
     3421 aaaatgttaa cggaaatgaa tgaagcacat tccggagccg aggatgtgat acataactgg
     3481 ctctgtaatc aagtagaaga agcgattttt gaaggcatta tgaaagatga tagaagtatt
     3541 agtggggcgg ttaaatactg ctcctcaagg gcttcaaagc atcaggcgga aggtgtggcc
     3601 atgattgatg acaaaactgt cttttcctgg gtgagaaagt attttatatc agaaaaagtg
     3661 tcgaaaagta ttgtaaaggc tacagttaaa gcaactgcaa caaaaccaga aaaaacgaaa
     3721 gttaaagcta agaaaaaacc gaaaaaaaca actgcgcaag aagggtatga gcaattagat
     3781 ttgcttgatt tcttatgaag agagaagcgc aaaactatat tgataataaa ttaaaaccac
     3841 caaaagcgtt ctttgaatgg tgtttctcac aaattccaac ttacaagtgg tccaacaaaa
     3901 aagaaactat tctagcttcc aatcgaaaaa actgcagtgt tattgaacag aagttaagaa
     3961 aaaactctag attgacattt tttggtaaat tgaacgtgtt cggtattgtc ttagttacat
     4021 cgaaaagaat tgagatacaa agttacgcgt tctggaatcg agtagtggaa ggaaaagaaa
     4081 taattgaatt tgatctagtc aattttgaac aatttgctga aggggaacac gtaaaggttg
     4141 caagtagcga cggcaagatg tggtttggtt taattccagt atacggtggg atgtctggcg
     4201 gaccttactc aatgattcag ttgtttgaaa atgactggaa agaaaaaatt cgaagtaaat
     4261 cagagcttaa gtacctagaa atcccgcact tagactttaa agaaattgaa actatatata
     4321 aatatagagt tgaaattgaa tttttgcaga aaattaaagc aagacaattg gccaaggaag
     4381 ttatgtatcc cgtaacacaa tatacaaatg gatcgtttag aaaaacggta gacatgcgaa
     4441 caattaatgc gaagtggttg aaagaaaaca agcccttctt taagaattcg gacagaggtt
     4501 ttatggaatt tgaattagca agaagaatac agaagcggcg aggaaaggta gtttctggaa
     4561 ttgaaaaata tcttgattac cgtgctatca acaaaatccc agaaggagta ggaatagttc
     4621 gctttcagaa ttggattatt aagaataaag tggattttag ctactaccta gattatctaa
     4681 acctaatgcg agacttaaat attgcaatcg atagcgaaaa cataattatg cctaaaaatt
     4741 tagtaatagc tcatgataac gcggtcaaat tactgtacca aatgaaacat gaagttgaag
     4801 aacaacaata taaagtgcga tttgagaaga taaaagactt agaaaaaacg atagataatt
     4861 acgcttttat tgtacctaag caagcatcgg acttattaac agaaggcaaa gcattaagcc
     4921 attgcgtagg cggtagtaat tatattaaac aacacattga agggaaaaca acgattattt
     4981 ttgttcgtga taagcaggac ttagaaaagt ctttttatac gctcgaatat aaaaatggcc
     5041 aaatttacca actgcgaggg aagcataatt gtgacccaac taaggacgtg caagaggctg
     5101 caaataagtg ggctaaatta ctaaaaagta aaacaaaagt attacagcat agttgaaata
     5161 ggagggtgaa gcatgagaga gagtgagttt agaggtaaac gaatagacaa cagagaatgg
//
LOCUS       DASDXX010000174         5210 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.174, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000174 DASDXX010000000
VERSION     DASDXX010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5210
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.174"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            141..2216
                     /gene="ftsH"
                     /locus_tag="U0280_002401"
     CDS             141..2216
                     /gene="ftsH"
                     /locus_tag="U0280_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEM2272325.1"
                     /translation="MNRFFRNAIFYVIIFLVIIGIVASFNSNKEAAKDISYSEFVSKL
                     EDGKVKSVEIQPDRSVYTINGEFKSSDKSSDDKKTGLGQSKTSSTAFTTYALNSDTSL
                     GDLQKTLDKEDVKTTIVPAKQNSGWVTFLTSIVPFVIIFILFFFLMSQSQGGGGGKVM
                     SFGKSKAKLYNDDKKKVRFTDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLL
                     VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCII
                     FIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPA
                     LLRPGRFDRQIMVDRPDVKGREAVLRVHARNKPLAKSVDLKAIAQRTPGFSGADLENL
                     LNEAALVAARSDKKEIDMSDLDEASDRVIAGPAKKNRVISEKERRTVAYHEGGHVIVG
                     MVLDEAEVVHKVTIVPRGQAGGYAVMLPKEDRFLMTKAELMDRITGLLGGRVAEEVTF
                     GEVTTGASNDFERATELARRMVTEWGMSDKIGPLQFTSGNGQVFMGRDFGSDKGYSDK
                     IAYEIDTEVQSLIRYCYDRAKTIITEHQEQHKLIAETLLKVETLDARQIRSLFDDGVM
                     PPDIDTIDVEAEYPSEKDEEVAGKSFEEEKEELKEEEKIEEPKEEPKEVTSEDAPNIE
                     QTPNDKKDE"
     gene            2332..3111
                     /locus_tag="U0280_002402"
     CDS             2332..3111
                     /locus_tag="U0280_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEM2272326.1"
                     /translation="MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVL
                     NFFSYANLTPSDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTGLNLKVDN
                     PREIGSDRIVNAVAASEEYGTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEA
                     LYNRAAKLPRVDIAESNQIIGKSTVASMQAGIFYGFVGQCEGIIAEIKKQSNASPVVV
                     ATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK"
     gene            3127..4011
                     /gene="hslO"
                     /locus_tag="U0280_002403"
     CDS             3127..4011
                     /gene="hslO"
                     /locus_tag="U0280_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEM2272327.1"
                     /translation="MSDYLVKALAYDGMARVYAAVTTETIKEAQRRHDTWSVSSAALG
                     RTMTGTLFLGAMQKEDQKITVKIEGDGPIGPIVADSNAQGQIRGYVTNPHVHFSELNE
                     AGKLDVRRGVGTSGMLSVVKDLGFGENFTGQTPIVSGEIGEDFTYYLATSEQINSSVG
                     VGVLVNPDDTIEAAGGFMLQLLPGATDEIIDEIEKNLTALPTVSRMIEAGETPESILA
                     KLAGGEDKLQILEKIPVSFECNCSKERFGSAIISLGKEEIRSMIEEDHGAEAECHFCR
                     NTYDFSEEELEKLYEEAK"
     gene            4127..5053
                     /gene="cysK"
                     /locus_tag="U0280_002404"
     CDS             4127..5053
                     /gene="cysK"
                     /locus_tag="U0280_002404"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEM2272328.1"
                     /translation="MTIANSITDLIGKTPIVKLNRLPEAGSADVYVKLEFQNPGGSVK
                     DRIANAMIESAEKSGALKPGDTIIEPTSGNTGIGLAMVAAAKGYQAIFVMPETMSLER
                     RKLLQAYGAKLVLTPGPDGMKGAIAKAEELAKENNYFVPQQFHNPANPAVHEETTGPE
                     IVEAFGKDGLDAFIAGVGTGGTVTGVGHVLKKNYPDVKIYALEPEESPVLSGGSPSPH
                     KIQGIGAGFVPDTLDTKVYDGILKVSSEDALETAREVAKKEGILVGISSGATVKAALD
                     LAKELGAGKKVLAIVASNGERYLSTPLYNFED"
BASE COUNT         1761 a         1015 c         1112 g         1322 t
ORIGIN      
        1 aagcgaaacg gatgtgtttt ttaataatca ggggaagaaa aaattgtttc taaatctgct
       61 attagccaaa aacaactttt aaaggggtaa aagtccagaa aaagtaagaa tccaagctct
      121 tgcgtgggag gaggtaagga atgaacaggt tttttagaaa tgcgatattt tatgtcataa
      181 tattccttgt tattatcggg attgttgctt catttaactc aaacaaagag gcagccaaag
      241 atattagcta ttcagaattt gtgagtaagt tagaagatgg taaagttaaa tccgtagaaa
      301 tacagccaga ccgtagtgtt tatacaatca atggggaatt taaatctagc gataaaagtt
      361 ccgacgataa aaaaactggt cttggacaaa gcaaaacaag cagcactgct ttcacaacat
      421 acgctttaaa cagcgatact tcactaggcg atttgcaaaa aacgcttgat aaagaagacg
      481 tgaaaacaac aatagtacct gccaaacaaa acagcggttg ggttacattc ctaacttcta
      541 ttgtaccttt tgtaattatc ttcatcctct tcttcttcct aatgagccag tctcaaggtg
      601 gcggcggtgg taaagtaatg agctttggta aaagtaaagc caaactttac aacgacgaca
      661 agaagaaagt tcgcttcaca gatgtagctg gagcagacga ggaaaaacaa gaacttgttg
      721 aagtagtaga attcctaaaa gatccgcgta aatttgcgga cctcggcgct cgtattccaa
      781 aaggtgtcct tttagtaggt cctccgggta ctggtaaaac cttgctagct cgtgcggttg
      841 ccggtgaagc aggcgtgcca ttcttctcta tctcaggttc agactttgta gaaatgtttg
      901 tcggtgtcgg tgcaagccgt gtccgtgatt tattcgaaaa tgcgaagaaa aatgcaccat
      961 gtatcatttt cattgatgaa attgatgcag taggtcgtca acgtggagca ggaatgggcg
     1021 gcggtcacga tgaacgtgaa caaaccctaa accaattact agttgaaatg gatggtttcg
     1081 gtggcaatga aggtatcatc attattgcag caactaaccg tgcagacgta cttgacccag
     1141 cacttcttcg tccaggccgt tttgaccgcc aaatcatggt tgatcgtcca gacgtaaaag
     1201 gccgtgaagc agtacttcgc gttcatgctc gtaacaaacc acttgctaaa agtgttgatt
     1261 taaaagcaat cgctcaacgt acaccgggat tctctggtgc cgatttagaa aacttactga
     1321 atgaagcagc actcgttgcc gcacgttccg ataagaaaga aatagatatg agtgacctcg
     1381 atgaagctag tgaccgcgta attgccggac cagctaagaa aaatcgagtt atctctgaaa
     1441 aagaacgccg cacagtcgca tatcatgaag gtggtcacgt tatcgtcgga atggtacttg
     1501 atgaagcgga agttgtgcat aaagttacca ttgttcctcg tggacaagct ggtggttatg
     1561 ccgtaatgtt accaaaagaa gatcgcttcc taatgacgaa agctgagtta atggaccgta
     1621 tcactggttt actcggtgga cgcgtagccg aagaagttac ttttggtgaa gtaacaactg
     1681 gtgcaagtaa tgactttgaa cgtgcaaccg aacttgctcg ccgcatggta actgaatggg
     1741 gtatgagtga caagattgga ccacttcaat tcacttctgg taacggtcaa gtatttatgg
     1801 gccgcgattt cggtagcgac aaaggatatt ccgataaaat cgcctacgaa attgatacag
     1861 aagttcagag cttaatccgc tactgttatg accgcgctaa aacaatcatt acagaacacc
     1921 aagaacaaca caaacttatc gcggaaacat tactaaaagt agaaacttta gatgctcgcc
     1981 aaattcgttc cctatttgat gacggtgtaa tgcctccaga tatcgatacg attgacgtag
     2041 aagcagaata tccttccgaa aaagacgaag aagtagcagg taaatctttt gaagaagaaa
     2101 aagaagagtt aaaagaagaa gaaaaaatcg aagaaccaaa agaagaacca aaagaagtaa
     2161 cttcggaaga tgctccaaac attgagcaaa caccaaacga taaaaaagac gaataaaatc
     2221 aaagaggctg ggctttccca gtctcttttt tgaagctata ttattcggat tttcctataa
     2281 aacatgttat gatacgttag aaaaatcttc taaaggacgg tatttaaact tatgatactt
     2341 gtaatagacg ttggaaatac taactgtact gtcggagttt atgaaaaaca aaaacttctg
     2401 aaacattggc gcatgacaac agatcgtcac cgcacatccg atgaattagg aatgacagtc
     2461 ttgaactttt tttcttatgc gaatttaact ccttctgata ttcaaggaat tattatttcg
     2521 tccgtcgttc caccgattat gcacgcaatg gaaacaatgt gcgtacgcta ttttaatatc
     2581 cgaccattaa tcgttggtcc aggaataaaa accggcttaa acctcaaagt cgataatcct
     2641 cgcgaaatcg gatctgaccg aatcgtaaac gccgtagcag catcagaaga atacgggaca
     2701 ccggttatcg tagtcgattt tggcactgcg accacatttt gctatatcga tgaatcaggg
     2761 gtataccaag gtggcgccat cgctccaggg attatgattt cgaccgaagc tctatacaac
     2821 cgcgctgcta aactaccacg cgtagatatt gctgaatcaa accaaatcat cggcaaatcc
     2881 accgtggcat ccatgcaagc gggcatcttt tatggtttcg tcggccaatg cgaagggatt
     2941 atcgcagaaa tcaaaaaaca atccaacgca agcccagtag tagttgcaac aggcgggctc
     3001 gctcggatga taacagaaaa atcttctgca gtagatattt tagatccatt tttaacatta
     3061 aaaggtctag aacttctata tagaagaaac aaaccaacta cagaaaaata aaaggagttt
     3121 tatataatga gtgattattt agttaaagcg ttagcctacg atggcatggc gcgtgtatat
     3181 gcagcagtaa caaccgaaac aatcaaagaa gcacaaagaa gacatgatac atggtccgtc
     3241 tcatccgccg cacttggtag aacgatgaca ggaacacttt tccttggagc aatgcaaaaa
     3301 gaagaccaaa aaataactgt aaaaatcgaa ggcgacggcc caatcggtcc aatcgtagct
     3361 gatagtaacg cgcaaggtca aatcagagga tacgtaacaa atccacacgt tcacttcagc
     3421 gaactaaatg aagctggaaa acttgacgtc cgccgcggcg ttggaacatc cggaatgctt
     3481 tcagttgtaa aagatttagg ctttggagaa aatttcaccg gacaaacgcc aattgtttca
     3541 ggtgaaattg gtgaagattt tacgtattac ctagcaacat ctgaacaaat caattcctcc
     3601 gttggtgtag gagtacttgt taacccagat gatacaatcg aagcagctgg cggtttcatg
     3661 ttgcaattac tccctggtgc gacagatgaa atcattgatg aaatcgaaaa aaatctgacg
     3721 gctctaccaa cagtttctag aatgattgaa gcgggcgaaa ctcctgaatc gattttagct
     3781 aaacttgcag gcggcgaaga taaactacaa atcttagaaa aaatccccgt ttcctttgaa
     3841 tgtaactgct ccaaagaacg ctttggcagt gcaataattt cacttggaaa agaagaaatt
     3901 cgttccatga tagaagagga tcacggcgca gaagcagaat gtcatttttg tcgtaacact
     3961 tacgattttt cagaagaaga attagaaaaa ctatacgaag aagctaaata aagaaaaagg
     4021 agcacctaat tggttgctcc tttttaaaag aggttaaact tgacaaaaca ggtcggaatt
     4081 aattaaacta gatgaaagac ctaaaataga taggagtgct ttaataatga caattgcaaa
     4141 ttcaatcact gatttaattg gaaagacacc tattgtgaaa cttaatcgtt taccagaagc
     4201 aggaagcgcg gatgtatacg taaaattaga attccaaaat ccaggtggca gcgtaaaaga
     4261 ccgtattgct aacgcgatga tcgaaagcgc tgaaaaatct ggtgcattaa aaccaggcga
     4321 tacaatcatt gagccaacta gtgggaatac tggtatcggc ctagcaatgg tagcagcagc
     4381 aaaaggctac caagcgattt tcgtaatgcc agaaacaatg agcttagaac gtcgcaaatt
     4441 acttcaagct tacggtgcaa aattagtttt aacaccaggt ccagacggca tgaaaggcgc
     4501 aattgctaaa gcggaagagc ttgcaaaaga aaataactat tttgttccac aacaattcca
     4561 caacccagca aatccagctg tccatgaaga aacaactgga ccagaaatcg ttgaagcttt
     4621 cggtaaagat ggcttagatg ctttcatcgc gggagttgga acaggtggaa cagtaactgg
     4681 tgtaggacac gtacttaaaa agaactaccc agatgttaaa atctatgctc ttgaaccaga
     4741 agaatcccca gtacttagcg gtggttctcc atcacctcat aaaatccaag gtatcggtgc
     4801 aggcttcgtt ccggatacat tagatacaaa agtgtatgac ggcattctaa aagtttcaag
     4861 tgaagatgct ctagaaacag cacgtgaagt agcgaaaaaa gaaggtatct tagtaggtat
     4921 ttcttccgga gcaactgtta aagcagctct agaccttgca aaagaacttg gtgctggcaa
     4981 aaaagtacta gcaatcgttg caagtaacgg cgaacgctac ctaagcacac ctctttataa
     5041 ttttgaagat taataatcag agagcctaga ttttctaggt tcttttttta tgaaaagaaa
     5101 taaatgcatt tcttactatt ttctaatcaa acgcacagcg gaaactttct tttcttggtt
     5161 aatatatagt cataagctaa caacaagcaa aacattttca ttctttcccc
//
LOCUS       DASDXX010000175         5172 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.175, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000175 DASDXX010000000
VERSION     DASDXX010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5172
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.175"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1028
                     /locus_tag="U0280_002405"
     CDS             <1..1028
                     /locus_tag="U0280_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM2272329.1"
                     /translation="DITVIESESGRAQEYVQKDPEAAADVFITPNDRLGQLVESGAVY
                     QLTKYTDDIKKNNTPTSIQAATYQDKMYGFPVTAEAMFMYYDKRVFSEDDIKTFSGIT
                     SKGKLGINLAEAGADYRETPWFIANGTYLYGENGEDPYGTTFNTPEGVQVLNWIGELK
                     NNPNVVAVNADEISALRSGKINAVFSGVWNKDAIREVLGENMGVAVYPKADFGSGQVD
                     MMAFQGSGIYCVNAFTKSPLDAMELADYITNADVQEKAFKELGKIPSNLEARTSSTVE
                     KDDVAKAVIDMTSGKHSVLMPKIPEMNVFWQHMNPLLVDTYKGKIKKEDYPEALDKLV
                     KDITPAK"
     gene            1046..2383
                     /locus_tag="U0280_002406"
     CDS             1046..2383
                     /locus_tag="U0280_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2272330.1"
                     /translation="MMVKKNYFNIFKNGSVSTRLSYVIMGAGNLAHKQIAKGLLFLFS
                     ELAFLFFLVFYGITLIQGMATLGTVNQSWNFDKSLGIMVRTPGDNSMLMLIYGIMTVV
                     ICVLFLFLYLANIRSACQVEGFQRENKKIPTFKEDLKSLLDNKFHVTLLTIPMIGVVV
                     FTIMPLVYMISLAFTNYDHEHLPPRNLFGWVGFVNFKNVLNGDISSTFFPVLGWTLIW
                     ALLATATCFFFGVLLALLINHKGVKFKKFWRTIFVITMAVPPFVSLLVMQNLLHAAGP
                     LNTMLLNWGIIAEPIPFLTDALLAKVSVIFVNMWIGIPVTMLIATGILMNLPKDQLEA
                     ARMDGGNSFHLFRYITFPQILTVMLPSLIQQFIGNINNFNVIYLLTGGGPSNSNFYGA
                     GDTDLLVTWLYKLTVEAADYNLASVIGIVTFILSAAFSLFAYTRTNSYKEGSN"
     gene            2385..3215
                     /locus_tag="U0280_002407"
     CDS             2385..3215
                     /locus_tag="U0280_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2272331.1"
                     /translation="MKRATVWPNLLLIVLGCIWIFPIIWIVLTAFRAESGQFVSYIFP
                     KEYTLDHFAYLFENHENFPFMLWVKNTMIVAVCSCLLSTFITVSMAYVLSRLRFRFKK
                     TMLKTALVLNMFPAFMSMIAVYYILKAFGLTQSLTALVLIYSSTAALTFYIAKGFFDT
                     IPKSLDESAMMDGATKLSIFTKITLPMSKPIIVYTALMAFMLPWMDFIFAKVIMGDNV
                     PKYTVSIGLYSMLNQTTANTMYTTFAAGCILIAVPITILFIYLQKYYVEGITSGAVKG
                     "
     gene            3230..4927
                     /locus_tag="U0280_002408"
     CDS             3230..4927
                     /locus_tag="U0280_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM2272332.1"
                     /translation="MEITETKEWWKESVVYQIYPRSFQDSNGDGIGDIRGIIERLPYL
                     KDLGINVIWLCPVYKSPMDDGGYDISDYYEIDPMFGTMSDMDELIEKAEKLGIKILMD
                     LVVNHTSDEHEWFEKAIADPKSKYRDYYIFREGVNGNPPNNWRSYFGGSAWEAVPGEE
                     NMFYLHAFSKKQPDLNWENIVVRNECIQMINWWLEKGLGGFRIDAILNLKKRIEYGTF
                     PADGEDGLVFIGHWILNQPGIEEWLKEIDERTFKKHNAFTVAEADVPEERLSEFIGEN
                     GHFRMVFDFSYTDIDTPETGEWFKNSEWTVKELKEKIITNELVTQRNGWGAKYLENHD
                     QPRSINKYLPQEYQDDRSKKMLGTLFMMLHGTPFIYQGQEIGMSNTRMESIDDYNDIA
                     THDQYHRAILSGMSPEEALEGMYRRSRDNSRTPMQWNNQKNAGFSDSDEIWLKANPNY
                     LDINVEQEQIDDNSVLNFYKKLIHLRSDSSKYKEVAVYGELLPVESSDEVIAYKRKTD
                     DAELLIIVNFSDSENQLCIEGTYEQVLANVALPEMVENVLEIPAYTGAVFSRVLEVD"
     gene            4928..>5172
                     /locus_tag="U0280_002409"
     CDS             4928..>5172
                     /locus_tag="U0280_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM2272333.1"
                     /translation="MQIKNKAMLITYSDSLGKNMEELSKVMETYFEDAVGGIHLLPFF
                     PSTGDRGFAPSDYTTVDSDLGSWEIIEKLGEKYYLMF"
BASE COUNT         1620 a          754 c         1160 g         1638 t
ORIGIN      
        1 atgatattac ggttattgaa tctgaatctg ggcgagcaca agaatatgtt cagaaagatc
       61 cagaagctgc ggcggatgta tttataactc cgaatgaccg tctaggacaa ctggtagagt
      121 ctggtgcggt ttaccaattg acaaagtata cagatgatat taagaaaaat aatacaccaa
      181 cctccattca agctgctaca tatcaagata aaatgtatgg tttccctgtg acggcggaag
      241 cgatgtttat gtattatgat aagcgcgttt tttcagagga tgatattaaa actttttctg
      301 gaataacgtc taaagggaag ctcggaataa atcttgcgga agctggcgcg gattatcgtg
      361 aaacaccttg gtttattgca aatggtacat atctttatgg tgagaacggc gaagatcctt
      421 atgggacaac ctttaacact ccagaaggcg tccaagtatt gaactggatt ggtgagctga
      481 aaaataatcc taatgttgtc gctgtaaatg cagatgagat tagtgcgctt agatccggta
      541 aaataaatgc cgtttttagt ggggtttgga ataaagatgc gatacgagaa gttttaggtg
      601 aaaatatggg agtggcagta tatccgaagg ccgattttgg aagtggtcag gtagatatga
      661 tggctttcca aggaagcggg atatactgtg tgaacgcatt tactaaatcg ccattagatg
      721 cgatggaact agctgattat attactaatg cggatgtgca ggaaaaagct tttaaagagt
      781 tagggaaaat tccgagcaat ttagaggcac gaactagttc tacagtagaa aaggacgatg
      841 tggcgaaagc agttattgat atgacatccg gaaagcactc cgttttaatg ccgaaaatac
      901 ctgaaatgaa cgttttttgg caacatatga acccgctatt agtagatact tataaaggca
      961 agattaagaa agaagattat ccagaggcgc tcgataaatt agtcaaagat attacaccag
     1021 cgaaatagga aagtaggtta agtatatgat ggttaagaag aattatttta atatttttaa
     1081 gaatggttct gtttctacga gattatctta tgtaattatg ggggctggta atttggccca
     1141 taagcaaatt gcgaagggac ttctatttct ttttagtgaa cttgctttct tgtttttcct
     1201 tgtgttttat ggcattacct taattcaagg tatggcgaca ttagggacag ttaaccaatc
     1261 gtggaatttt gataagagtt taggtattat ggttcgaaca ccgggcgata attccatgct
     1321 gatgctaata tatgggatta tgacagttgt tatttgtgta ctatttctct tcttgtacct
     1381 tgctaatatt agaagcgctt gccaggtgga gggcttccag cgggaaaata aaaaaatccc
     1441 aacatttaag gaagacttaa agagtttgct agacaataaa tttcatgtaa ctttactgac
     1501 gatcccgatg attggggttg tggtgtttac gataatgcca cttgtttata tgatttcttt
     1561 ggcttttacc aattatgatc atgaacattt accgccaagg aatttatttg gatgggtagg
     1621 atttgttaac tttaaaaatg tgctaaatgg tgatatttcc agtacgttct ttccggtgct
     1681 tggatggaca cttatttggg cgcttttagc tactgctact tgtttctttt ttggcgtatt
     1741 gcttgcactt cttattaatc ataagggtgt taaattcaaa aagttttggc gcactatctt
     1801 tgttataact atggcggtac ctccgtttgt gtcacttctc gtaatgcaga acttgttgca
     1861 tgcagcagga ccgcttaata cgatgttact taattgggga attatagctg agccgatacc
     1921 atttttgaca gatgctttgc tagcaaaggt atccgtcata tttgtcaata tgtggattgg
     1981 gattccggta actatgttaa tcgccacggg gattttaatg aatctaccga aagatcaatt
     2041 ggaagcggcg cgaatggatg gaggtaacag ttttcattta tttagataca taactttccc
     2101 tcaaatctta acggtgatgt tgccaagtct gattcaacaa tttattggaa atataaataa
     2161 ctttaatgtg atctatctct tgactggtgg aggaccttcg aatagtaact tctatggtgc
     2221 tggggatacg gatttgctcg tgacatggct ttataaatta acagtagaag ctgcggatta
     2281 taatttagct tcggttattg ggattgtaac attcattctt agcgcggcat tctcgttatt
     2341 tgcctacaca cgtacaaatt cttataaaga agggagcaac tgaaatgaaa agagctacag
     2401 tatggcctaa tctattgttg atagtgctcg ggtgtatctg gatattcccg attatctgga
     2461 ttgttttgac agcttttaga gcggaaagtg gacaatttgt ttcgtatatc tttccgaaag
     2521 aatatacgct agatcatttt gcgtacctat ttgaaaatca tgaaaatttt ccttttatgt
     2581 tatgggttaa aaatacaatg attgttgcgg tgtgttcctg tttattgagc acttttataa
     2641 ccgtttcgat ggcttatgtg ttatctagac ttcgctttag atttaaaaag acgatgttaa
     2701 aaacagcgct agttttaaat atgtttcctg cttttatgag catgatagca gtttactata
     2761 ttttgaaagc atttggatta acgcaatctc taacggcgct tgtgttaatt tattcatcta
     2821 cagctgcatt aactttttat attgcaaaag gattttttga tacaatacca aaatctttgg
     2881 acgaatcggc aatgatggac ggggcgacga aattaagtat ctttacaaaa ataactttac
     2941 caatgtctaa gcctattatt gtatacacag ctttaatggc atttatgttg ccttggatgg
     3001 attttatttt tgctaaagtg attatgggag acaatgtgcc taaatataca gtgtcgatag
     3061 gtttatattc catgttgaat caaacaacgg caaatacaat gtatacaacg tttgcggctg
     3121 gctgtatatt gattgcggta ccaattacaa tactgtttat ttatttgcaa aaatattatg
     3181 ttgaaggcat tacaagtggt gctgttaaag gataggagat agattaatag tggaaataac
     3241 agaaacgaaa gaatggtgga aagaatcggt agtgtaccaa atctatccgc gtagttttca
     3301 agattcaaat ggggatggta ttggagatat tagaggaatt atagaacgac ttccttattt
     3361 gaaagattta ggtattaatg tgatttggct ttgtcctgtc tataaatcac ctatggatga
     3421 tggtggttat gacatttctg attactatga gattgatcca atgtttggaa cgatgagtga
     3481 tatggatgaa ttaattgaga aggcagaaaa attaggaata aaaatattga tggatttggt
     3541 ggtaaaccat acatctgatg aacatgaatg gtttgaaaaa gcaatagctg acccaaaaag
     3601 taaatatcga gattattata ttttccgaga gggtgtaaat ggaaacccgc ctaataattg
     3661 gcgttcttat tttgggggat ctgcgtggga agccgtacca ggtgaggaaa acatgtttta
     3721 cctacatgct ttttctaaaa aacagccaga tttaaactgg gaaaacattg tagtgcgtaa
     3781 tgaatgtatc caaatgatta actggtggct tgaaaaaggt ttaggtggct ttagaattga
     3841 tgccatttta aatttgaaga aaagaattga gtacggtact ttcccagcgg acggggaaga
     3901 tggcttggtt ttcatcggtc attggatttt aaatcagccg ggaattgaag agtggctcaa
     3961 ggagattgac gaacggacat ttaaaaaaca taatgcattt actgtggctg aggcggatgt
     4021 gcctgaagaa agactttctg aatttatagg tgaaaatggt catttccgta tggtgtttga
     4081 ttttagctat acagatattg atactcctga aacaggcgaa tggttcaaga attcagaatg
     4141 gacagtaaaa gaattaaaag agaaaataat taccaatgaa ctggtgacac agcgaaatgg
     4201 ttggggggca aaatacttag aaaatcatga tcaaccgcgt tcgataaata agtatttacc
     4261 tcaagaatac caagatgatc gtagcaaaaa aatgctaggc acgttattta tgatgttgca
     4321 cggtacgccg ttcatttatc aaggacaaga gattggtatg agtaatactc ggatggaaag
     4381 tatagatgat tataacgata ttgcgacgca cgatcaatac catcgcgcaa ttctctctgg
     4441 aatgagtccg gaagaagcgc ttgaaggaat gtatcggcgt agtagggata attcaagaac
     4501 accgatgcaa tggaataatc aaaagaacgc tggtttttcc gactcagatg aaatttggtt
     4561 gaaagcaaac cctaattacc ttgatattaa cgtagagcag gaacaaatcg atgataattc
     4621 cgtattgaat ttttataaga aattaatcca tttaagaagt gattctagta aatataaaga
     4681 agtggctgtt tatggagaat tactgccagt agaatcaagt gatgaagtta ttgcttacaa
     4741 acgtaaaaca gatgacgctg agctcttaat catcgtgaat ttttctgatt ctgaaaatca
     4801 attatgcatt gaaggtactt atgaacaggt acttgctaat gtagcgttgc cagaaatggt
     4861 agaaaatgtc cttgaaatac ctgcatatac aggtgccgtc ttctcaaggg ttttggaggt
     4921 agactgattg caaattaaaa ataaagctat gttaattact tattctgata gtttagggaa
     4981 aaatatggaa gaattatcca aggtgatgga aacttatttt gaagatgctg ttggcgggat
     5041 tcacttattg ccgttctttc catccactgg agatcgaggg tttgcgccaa gtgattacac
     5101 aacagtagat agcgacctag gttcttggga aataatcgag aaattaggcg aaaagtatta
     5161 tttaatgttt ga
//
LOCUS       DASDXX010000176         5162 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.176, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000176 DASDXX010000000
VERSION     DASDXX010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5162
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.176"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            20..4780
                     /locus_tag="U0280_002410"
     CDS             20..4780
                     /locus_tag="U0280_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cna B-type domain-containing protein"
                     /protein_id="HEM2272334.1"
                     /translation="MLKHNWQKVFVVMVAVALIFQLVPWSNIFAGAEENQTKTTQQIA
                     QSDEQKGADENKTTVTSDNRETTKNLVNGKQLLKGSVDWNFTNKVTDANGNTKQTYAP
                     GDSLKFSISLAIPSYSESVLDETYTFWIQKDFFQGDKVTFVNPAIDGLTPRQNVFTDD
                     SMKNSIGTKTINGVEYIGYTLKFNQSPEALAKYEDEPLTNAKFDMFATINTTITTKDD
                     YKAIVIEDDKDVDISNIEVPVTPPTPDTDNGVLTASKAIDSAWRLDKDTGKYLKVATS
                     STNYTPEKDDLVFYYVYATNNSAENAVLEKMVDELPAGFSIITEGSPEWQALSTASGS
                     SLQRGWVASADQTNLAPGATRYELPFSPAQTISKNGGGIYKTIAAKVTDPTKDLTNVT
                     KSPTKGGEGKSGSVTPSGKDVYDMAITTKISSTYDKNNKYIGAVSSTTTPVSISEGST
                     VGVTYTAINQGNYTKDVVVYAYVPAGYELNNDTSDFKTTNDKWKYETTVPSGGGVWSD
                     IKVYSITLSGGMASGATATATMYMKAIGMPDDGTYSAVDFYMAGEIGSFSNFNGDSTL
                     DGAITDVDSTPDMNPGNDLISNVDGSTVKPIDGFQKEKPHVVKENAKSTATLQDEDDF
                     DFDYVTFIKTPEVIPSEGKVFEKTRLSAADAEKTARNMIGSDIMGSALKDYTPLADDG
                     RITSPKTYMVYEMNINPSGVEDTLNSSFTDTLPKGLKMLEYDIAGLNSSNKHIYGFTT
                     NKFEGTPKFTNADGQDVIVYQKGLYSEKQVCIANPTLNDVGVRYFGNNADKMGVTGSV
                     TKDARTLTLNFGQPAADPMYSETKAAYKVYMIVVIDPDEIDYSSIMQNKATYTYNDKV
                     ITSYENSEMYWDAGGGTAYAKKYVLDNKTNAYLSGSQYNVATPDADGNLSVGYKIRVR
                     SAYEFDKSSINIGDIIAADNFKSISNVEVNGYEASPNTGFQIDGELENPVPLAADKYA
                     VEAKATANTLDITNPVDIPQMQLYNVLFKVNYQKVKYGAKLVNQAAGSEVATVVPLNL
                     NLLKQDDISKTALTGYEFKAYYADENGKADLTKPVKDTNSNEIVMTDSSGAANFIPTG
                     YKTTSKNQEWKVVLVETKTPTGYESNENKEYPVTVKSDANGNLSIPATTETNLEITNN
                     DHGATTATIDNHADVKMIDVNGAKTWTGDTEADRPDSIEVQLLQDGVAYGSPITVTKA
                     DDWKYEFKNVPETNADGNKYTYTVLENTVTNYTSAVTGLDINNTLIKPDVKMINLDGQ
                     KTWKNDTENDRPASIEIQLQQNGQDYGFPVTVTKDNDWKYEFKNLPETTNDGAAYNYT
                     IVEKAVPGYATKVDGMNVINTKIDAPKTTVSGEKTWKNDTAKDRPDYIEVQLLQNGQT
                     YGDPVKVTKENDWKYSFKDLPKTDANNNAYRYSVTEIAVPGYKTTTDGMNLTNTKVTD
                     EKNVTTASGTKTWVGDNEKTRPASIEVQLLQNGKAYGTPIKVTAKSNWKYNFTNLPEK
                     DKTGEKYSYTVSEKQVSGYSVKVKGMDLTNTKVTKTTPKDTPKNTPKDTHSTNKPSKT
                     KKLPGTGDTNGMLLFAGGLVLLFLGLHLRRKSTK"
     gene            4877..5152
                     /locus_tag="U0280_002411"
     CDS             4877..5152
                     /locus_tag="U0280_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272335.1"
                     /translation="MKEELLQAIEVGEPVLLVTAIGYIVGIVETKGELIRLNDVYINC
                     VSASRVNRFSRGLAVNVNQVIGMQLLSKSEKDEMIGGWKAYVAPTAG"
BASE COUNT         1958 a          948 c          995 g         1261 t
ORIGIN      
        1 tagcaaaagg agaattatca tgctaaaaca caactggcaa aaagtattcg ttgtaatggt
       61 tgcggttgcg cttatttttc aattggttcc gtggtctaat atcttcgccg gagcagaaga
      121 aaatcaaaca aaaacaaccc aacaaatagc acaatcagat gaacaaaaag gagcagatga
      181 aaacaaaaca accgtaacat ctgacaatag agagacaact aaaaatctag ttaatggaaa
      241 gcaattacta aaaggctctg ttgactggaa ttttacaaat aaagtaactg acgcaaacgg
      301 gaatacaaaa caaacttatg caccgggaga ctcactcaag ttttcaataa gtttggcaat
      361 cccatcctat tcagaatcag tattggatga aacttataca ttttggatac aaaaagactt
      421 ctttcaagga gacaaagtaa catttgttaa tccagcaatt gatggattaa caccgagaca
      481 aaatgttttt acagacgact ccatgaaaaa ctcgattgga acaaaaacaa taaatggtgt
      541 cgagtatatt ggttacacgc tcaaatttaa ccaaagccca gaagccttgg caaaatatga
      601 agatgagccg cttactaacg ctaaatttga tatgtttgca acaataaata cgactattac
      661 aacgaaagat gactataaag ctattgtaat tgaagatgat aaagacgtag atattagtaa
      721 tattgaagtc cccgtgacac caccaactcc cgatacagat aatggtgtac tcaccgcgtc
      781 taaagcaatc gattctgctt ggcggttaga taaagacact ggaaaatatc ttaaagtcgc
      841 tacatcatct acaaactata cacctgaaaa agatgatcta gttttctatt atgtgtatgc
      901 tacgaacaat tcagcggaaa atgccgtttt agaaaaaatg gtagatgaat taccagctgg
      961 tttttccatt attacggaag gctcaccaga atggcaggcg ttatcaactg catctggctc
     1021 ttcgcttcaa cgcggctggg tagcttcagc agaccaaaca aaccttgccc ctggcgcaac
     1081 taggtacgaa ttaccatttt ccccagctca gacaatctcc aaaaatggtg gcggtattta
     1141 taaaacgatc gcagcaaaag taacagatcc aacgaaagat ttgactaatg ttactaaaag
     1201 cccaactaaa ggcggcgaag gtaaatctgg ttctgtaacg ccaagtggga aagatgttta
     1261 tgacatggca attacgacaa aaattagttc cacttacgat aaaaacaata aatatattgg
     1321 tgctgttagt agcacaacta cgcccgtttc tatatcagaa ggaagcacag ttggcgtaac
     1381 atatacagcg attaatcaag ggaattatac aaaagatgtt gtcgtttatg cctatgtacc
     1441 agcaggttat gaactaaata atgatacatc tgatttcaaa actacgaatg ataaatggaa
     1501 atacgaaaca accgtaccta gtggtggcgg tgtgtggagt gatatcaaag tttactccat
     1561 tacactttct ggaggcatgg catcaggtgc aactgcaact gcgaccatgt acatgaaagc
     1621 tatcggcatg ccagatgatg ggacttatag cgcagtagac ttttacatgg ctggagaaat
     1681 cggttcattt tctaacttta atggtgattc tactttagac ggagcaatta ccgatgtaga
     1741 ttcgacgcca gatatgaatc caggaaatga tctgattagc aatgttgatg gttctactgt
     1801 aaaacctatt gatggcttcc aaaaagaaaa accccatgtt gtaaaagaaa atgctaaatc
     1861 aacagcgact ttacaagatg aagatgattt cgattttgat tatgttacgt tcattaaaac
     1921 accagaagta attccatcag aaggaaaagt gtttgaaaaa acacgtctat cagcagctga
     1981 tgcagaaaaa acagcgcgca atatgatagg tagcgacatc atgggttctg ccttgaaaga
     2041 ctatacgcct cttgccgacg atggtagaat tacttcacca aaaacatata tggtctatga
     2101 aatgaacatt aacccatctg gagtagaaga cacactaaat tcttcgttca cagatacact
     2161 tccaaaagga ttgaaaatgc ttgaatatga tattgctggt ttaaattcta gcaataaaca
     2221 catttatggt tttacaacga acaaatttga aggtacaccg aaattcacaa atgcagacgg
     2281 acaagatgtt attgtttatc aaaaaggctt atattccgag aaacaagttt gtattgccaa
     2341 ccctacttta aatgacgttg gagtaaggta tttcggaaat aacgcggata aaatgggtgt
     2401 aactggttcc gtaacaaaag atgcacgtac actaaccctt aattttggac aaccggcagc
     2461 tgacccgatg tatagtgaaa caaaagcagc ttataaagtg tatatgattg tggtaattga
     2521 tccagacgaa attgactaca gcagtatcat gcaaaataaa gcaacataca cttacaacga
     2581 taaagttatt acttcttatg aaaatagcga aatgtactgg gatgctggtg gcggtacggc
     2641 ctatgcgaaa aaatatgttt tagataataa aacaaatgca tatttaagtg gaagccaata
     2701 taatgtagct actcctgatg cagacggtaa tttgtcagtt ggctataaaa ttcgagtaag
     2761 aagtgcctat gaatttgata aatcatctat aaacattgga gatattattg ctgcagataa
     2821 ttttaaatct atctctaatg tagaagtaaa tggttatgag gcaagtccaa acacgggctt
     2881 ccaaattgac ggggaacttg aaaatcctgt accacttgct gcggataagt atgcggtaga
     2941 agcaaaagca actgcaaaca cattagatat cacaaaccca gttgacattc cacaaatgca
     3001 actatataac gttcttttca aagtgaatta tcaaaaagtg aaatacggcg cgaaactagt
     3061 taaccaagca gcagggtcag aagttgcaac tgttgttcca ttaaacttaa atcttctaaa
     3121 acaagatgat ataagcaaaa cagcattgac aggctatgaa ttcaaagctt attatgcaga
     3181 tgaaaatgga aaagcagatt taacgaaacc ggtcaaagat acaaatagta atgaaattgt
     3241 tatgacagac tcatccggcg cagcaaattt catcccgaca ggttataaaa caacttctaa
     3301 aaatcaagaa tggaaagtag ttcttgttga aacaaagaca ccaactggtt atgaatcaaa
     3361 tgaaaataaa gagtatccag ttacagtgaa aagcgatgcg aatggcaact tatccattcc
     3421 agccactaca gaaacaaacc ttgaaatcac caataatgat cacggcgcaa caacagcgac
     3481 tattgacaac catgcagacg tgaaaatgat tgatgtgaat ggcgcgaaaa cttggactgg
     3541 tgacacagaa gcagatcgcc cagattccat cgaagtacaa cttttgcaag acggtgtagc
     3601 atacggtagc ccaattactg taacaaaagc agacgactgg aaatacgaat tcaaaaatgt
     3661 tccagaaaca aatgcagatg gaaataaata cacgtataca gttttagaaa atacagttac
     3721 taactataca agtgctgtca caggtcttga tattaacaac acgttaatca aaccagatgt
     3781 aaaaatgatt aatcttgacg gacaaaaaac atggaaaaac gatacagaaa atgaccgtcc
     3841 cgcatccatc gaaattcaac tgcaacaaaa tgggcaagat tacggtttcc cagtaacagt
     3901 tacaaaagat aacgattgga aatacgaatt taaaaaccta ccagaaacaa ccaatgatgg
     3961 agcggcttac aattacacga ttgtcgaaaa agcagttcca ggctatgcaa ccaaagtcga
     4021 cggaatgaac gtcatcaaca cgaaaataga tgcaccaaaa accactgtct ctggtgaaaa
     4081 aacatggaaa aacgacacag ccaaagaccg tccagactat atcgaagtac aacttttaca
     4141 aaatggacaa acttatggtg atccagtcaa agtaacgaaa gagaacgact ggaaatatag
     4201 cttcaaagat ctacctaaaa ccgatgctaa caacaacgct tatcgttact ctgttactga
     4261 aatagcagtt ccaggctaca aaacaaccac agatggaatg aacttaacca atacaaaagt
     4321 aaccgatgag aaaaatgtaa ctacagcgag cggcacaaaa acttgggtgg gagacaatga
     4381 aaaaacacgt cccgcatcca tcgaagttca acttttacaa aacggtaaag catacggaac
     4441 accaatcaaa gtaacagcaa aatcgaattg gaaatacaac tttaccaacc ttccagagaa
     4501 agacaaaaca ggtgaaaaat acagctatac tgtatctgaa aaacaagtat ctggctatag
     4561 tgtaaaagta aaaggtatgg acttaacgaa tacaaaagta acaaaaacga caccaaaaga
     4621 tacaccaaaa aatacaccaa aagatacaca ttctaccaat aaaccaagta aaacgaaaaa
     4681 attacctgga actggtgata cgaatggtat gttgctattt gctggtggat tagtactatt
     4741 attcttaggt ctacacctta gaagaaaaag taccaaataa agaaaacagc cgatccgagt
     4801 aagcttggat cggtttttct tttgaataaa gttaaaatcg ggtatacaaa taaaaatgaa
     4861 ataagggggc ttcatgatga aagaagaatt actgcaagca atcgaagtcg gcgagccagt
     4921 tttacttgta acagcaatcg ggtatattgt aggaattgtg gaaacaaaag gagagcttat
     4981 tcgcttaaat gatgtgtata tcaattgtgt ttcagctagc agggtaaatc gtttcagccg
     5041 aggcttagct gtgaacgtca atcaagtcat cggtatgcaa ctattaagta agtcggagaa
     5101 agacgaaatg attggcggct ggaaggcata cgtggcacct acagctggct aagctatgat
     5161 at
//
LOCUS       DASDXX010000177         5129 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.177, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000177 DASDXX010000000
VERSION     DASDXX010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5129
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.177"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..744)
                     /gene="pepC"
                     /locus_tag="U0280_002412"
     CDS             complement(<1..744)
                     /gene="pepC"
                     /locus_tag="U0280_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM2272336.1"
                     /translation="MHTELTFEQLESFSRKWRENPDKLVFQASIIKNGIKAATENPAS
                     KVSIQPVFSHEVATDKVSNQQQSGRCWMFAALNTFRHKLNGTLGLKDFELSQNYTNFW
                     DKLEKANYFLENIIETASEDEDSRLVSWLLDTPQQDGGQWDMLVSIIEKYGVVPKSAM
                     PETFQSSKSADLNHLLNERLRTDAVILRNAIAEKKDTADLKEEMLAEVYQLLVMTLGE
                     PPKVFDFEYRNKDNEFKQELQITPKDFYER"
     gene            962..1714
                     /locus_tag="U0280_002413"
     CDS             962..1714
                     /locus_tag="U0280_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2272337.1"
                     /translation="MLNAERKQLIMESIEKLGVIKLQELVEGLATSESTIRRDLIELE
                     EQGLIQRVHGGAKLVKLHNQEPSMNEKSFKNIQSKKVIAVYCASLVEENDCIYLDAGS
                     TTLELITHLANRNITVVTNGLTHIEELVRQNIDAYLLGGKMKVHTKAIIGAVALDNIQ
                     NYHFDKAFIGTNAMHPEHGYTTPDMEEAFVKRAAKERADRVFVVADHTKFNEVNFSKM
                     FSIEEATIVTDYIPSAVKESFIQKTKIIEVEK"
     gene            1711..2634
                     /gene="pfkB"
                     /locus_tag="U0280_002414"
     CDS             1711..2634
                     /gene="pfkB"
                     /locus_tag="U0280_002414"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HEM2272338.1"
                     /translation="MIYTITLNPSIDYIVQIDQLNLGGLNRMKQDYKLPGGKGINVSR
                     VLNQLNVPSLATGFLGGFTGNFIKDWLQNEGVKTGFVTVKDDTRINIKLKHGEETEIN
                     GLGPAISEKEINGFLKVMDKVTANDIVILSGSVPPSLGNDFYNKIIQICKEKKAEFMI
                     DTTGQELLDALPNHPILIKPNHHELADLFGVKLGSVEELIPYGKKCLELGAQHVIVSM
                     AGDGALLFTGEDVYFADALKGELKNSVGAGDSMIAGFVGTFDKTRDPVKAFAAGVATG
                     GATAFSTDLAQKELIDELLPQVKITKITGRN"
     gene            2636..4534
                     /locus_tag="U0280_002415"
     CDS             2636..4534
                     /locus_tag="U0280_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2272339.1"
                     /translation="MRITDLLSKDVMIMSLQATTKEAAIDEMIASLKSNGKINDEVLF
                     KEAIMNREAQSSTGVGEGIAMPHAKTKAVNEPTVVFAKSEKGLDYDALDGQPAHLFFM
                     IAAPDGANATHLETLAALSRLLVHPAFVQSLRDAKTPEEVINLFNNEQEDAEETVVAP
                     TSTNETGKSVVAVTACPTGIAHTYMAAEKLQETANKLGVRIKVETNGSRGVENRLTDK
                     EIAEADGVIIAADVQVDMPRFDGKHLIAKPVAAGIHKPEELIKEAISGNAPIYKAEEG
                     SQATESADGLSIGQQIYKHLMSGVSHMLPFVIGGGIAIAIAFMLDQMLGVPQDQLAKL
                     GSYNEIPALLKQIGDVAFGFMLPVFAGYIAYSISDRPGLVAGFVAGGVASVGGAGFLG
                     ALVGGFLAGYAVELIKLALKKLPKTLDGIKVVLFYPVLSVLIVGLLMLLLNVPMSALN
                     TWLNDFLNSLSGTNAVILGLLLGAMMAADLGGPINKAAYIFATGTLAASVATGGSAIM
                     AATMAAGMVPPLATFVATLIFRNKFTAQERDAGLTNSILGASFITEGAIPFAAADPLR
                     MIPSFIAGSAITGAVVMFLNIKVLAPHGGVFVIFLVSQPWFYIIAIIIGTLISAGLIG
                     VLRKKPTV"
     gene            4640..4987
                     /locus_tag="U0280_002416"
     CDS             4640..4987
                     /locus_tag="U0280_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272340.1"
                     /translation="MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPI
                     FILAKLAEILGTTTDFLLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSEDELL
                     MLKRIADAIENKK"
     gene            complement(5042..>5129)
                     /locus_tag="U0280_002417"
     CDS             complement(5042..>5129)
                     /locus_tag="U0280_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HEM2272341.1"
                     /translation="TLAAEPRRYYSTMLPNNEDPNEPQDPEQ"
BASE COUNT         1720 a          857 c         1023 g         1529 t
ORIGIN      
        1 gcgttcataa aaatctttag gtgtaatttg taattcttgt ttaaattcat tgtctttatt
       61 tcgatactca aaatcgaata ctttaggtgg ttcgcctaga gtcataacca agagttgata
      121 gacctcagca agcatttctt ctttcaaatc tgcagtatct ttcttctcag caatagcatt
      181 tctcaaaata accgcatccg tacgaagtct ttcatttaat agatggttta aatcagcaga
      241 cttactactt tgaaacgttt caggcatagc tgactttgga accactccat atttttcaat
      301 aattgaaact aacatatccc actgcccacc atcttgttgg ggtgtatcaa gcaaccacga
      361 aactaatcga ctatcttcat cctcacttgc tgtttcaatt atattctcta aaaagtaatt
      421 tgctttctca agtttgtccc aaaaattagt ataattctgt gataactcaa aatccttcaa
      481 accaagcgtt ccgtttaatt tatggcgaaa cgtatttaat gctgcaaaca tccagcatct
      541 tccactttgt tgttgattag aaactttatc tgtagcaact tcgtgggaaa agacaggttg
      601 aatgctaact tttgatgcag gattctcagt tgctgcttta atcccattct tgataatact
      661 agcttgaaat accaatttat ctggattttc acgccatttt cgagaaaaac tttctaattg
      721 ctcaaatgtt aattctgtat gcatgaataa ctcctcctaa aatgaaaatt atcttctaac
      781 caagtatact gctaaaaatt agaactgtat aagaaaaacg ctgaatgaat aattgtgaag
      841 gattatggcg atatacatgg tataatatga atgaatttga aaatgtgtga ttgtttttga
      901 atgaaaacgg ttgattttga aaggaaaaga tggtaaactg actttggatg gaggagtaat
      961 aatgttaaat gcagagcgta aacaacttat tatggagagt attgagaaac ttggtgtgat
     1021 taaattacaa gaattagttg aaggtcttgc tacctcagag tcaaccattc gccgtgattt
     1081 aatcgagtta gaagaacaag gattaattca gcgcgtacac ggcggggcga aacttgtaaa
     1141 acttcataat caagaaccaa gtatgaatga aaaatcattc aaaaacattc aaagtaaaaa
     1201 agtaattgct gtatattgtg caagcctagt ggaagaaaat gattgtatct atttagatgc
     1261 aggatccaca acattagaat taattactca cctagcaaat cgaaatatca cagtagtgac
     1321 aaatggatta acccatattg aagagcttgt tcgtcaaaat atagatgctt atcttttagg
     1381 cggcaaaatg aaagtgcata caaaagcaat tattggtgca gttgccttag ataacattca
     1441 aaactatcat tttgataaag ctttcattgg taccaacgcg atgcatccgg agcatggcta
     1501 cacaacacct gatatggaag aggcatttgt aaaacgtgct gcaaaagaac gtgctgatcg
     1561 cgtttttgtt gtagcagacc atacaaaatt caatgaagtg aatttttcaa aaatgttttc
     1621 aatagaagaa gcaactattg tgacagatta cattccttct gcagtaaaag aatcctttat
     1681 ccaaaaaact aaaataatcg aggtagaaaa atgatttata caattacttt aaacccatca
     1741 attgattata ttgtacaaat cgaccaatta aatcttggcg gtcttaatcg catgaagcaa
     1801 gattataaac tacctggtgg caaaggaatt aatgtcagca gagttttaaa tcaattaaat
     1861 gtaccaagtc ttgctacagg atttttaggt ggatttacag gcaattttat caaagactgg
     1921 ctacaaaacg aaggtgtgaa aactggcttt gtaacagtga aagatgacac tcgtattaat
     1981 atcaaactaa aacacggaga agaaacagaa attaatggtc tagggccagc tatttctgaa
     2041 aaagaaatca atggattttt gaaagtgatg gataaagtaa ctgctaacga tattgttatt
     2101 ttatctggta gtgtgcctcc ttcacttgga aatgattttt acaataaaat aattcaaatt
     2161 tgcaaagaaa aaaaagctga atttatgatt gatacaactg gtcaagaact gctagatgca
     2221 ttaccaaacc acccgattct aattaaacca aatcaccacg aactagcaga cctatttggc
     2281 gtgaaacttg gtagcgtaga agaacttatc ccatacggga aaaaatgttt agaattaggc
     2341 gcgcaacatg taatcgtgtc catggctggt gacggagcgc ttctatttac aggagaagat
     2401 gtttacttcg ccgatgcatt aaaaggggaa ctgaaaaatt ccgtaggtgc tggagactca
     2461 atgattgcag gctttgttgg gacttttgat aaaacgagag atcccgttaa agcttttgct
     2521 gcaggagttg caacaggtgg agctactgca ttttcaacag atttagccca aaaagaacta
     2581 atagatgaac tattaccgca agtgaagata accaaaataa cagggaggaa ctaaaatgag
     2641 aatcactgat ttattaagca aagatgttat gattatgtca ttacaggcaa cgacaaaaga
     2701 agctgccatc gatgaaatga ttgcttcgtt aaagagcaac gggaaaatta atgatgaggt
     2761 gctgtttaaa gaagctataa tgaaccgtga agcacagagt tctactggtg taggtgaagg
     2821 aattgcaatg cctcacgcga aaacaaaagc agtaaatgaa ccaactgttg tttttgctaa
     2881 gagtgaaaaa ggattggatt atgatgcttt agatggtcag ccagcacact tattctttat
     2941 gattgctgct ccagatggcg ctaatgcaac tcatttagaa actttagcag ctctttctag
     3001 attattggtt catccagcgt ttgtgcaatc gttaagagat gctaaaactc cagaggaagt
     3061 aatcaattta ttcaacaatg aacaagaaga cgcagaagaa acagtcgttg ctccaacctc
     3121 aaccaatgaa actggtaaat cagtcgtagc agttacagca tgtccaacag gaattgcaca
     3181 tacttatatg gctgcagaaa aattacaaga aactgctaat aaattaggtg tacgaatcaa
     3241 agttgagaca aatggctcta gaggcgttga aaaccgttta acagataaag aaattgcaga
     3301 agctgatgga gttattattg cagctgacgt acaagtagat atgcctcgtt ttgacgggaa
     3361 gcatttaatt gctaaaccgg ttgcagcggg aattcataaa ccagaagaac taattaaaga
     3421 agcaatttca ggcaatgctc caatttataa agcagaggaa ggtagtcaag ctacggagag
     3481 cgcagacgga ctttctatcg gtcaacaaat ttataaacat ttaatgagcg gtgtttctca
     3541 catgttgccg tttgtaattg gtggaggtat cgcaatcgcc atcgcgttta tgcttgatca
     3601 aatgttaggt gttcctcaag atcaactcgc aaaacttggt tcatataacg aaatcccagc
     3661 actattaaaa caaatcggtg atgttgcatt cggcttcatg cttccagtat tcgctggata
     3721 tattgcctac agtatatcgg atagaccagg acttgtagca ggttttgttg caggtggagt
     3781 agcatctgtt ggtggtgcag gcttccttgg agcacttgtt ggtggtttcc ttgcaggtta
     3841 tgcagtagag ttaattaaac tagcacttaa aaagttacca aaaacattag acggtatcaa
     3901 agtagtttta ttctatccag ttttatcggt gttaattgtc ggacttttaa tgttgctatt
     3961 aaatgtacca atgagcgcat tgaacacttg gttgaatgac ttcttgaata gtttaagcgg
     4021 aacgaacgca gttattttag gattactgtt aggtgcaatg atggcagcgg atttaggtgg
     4081 accaattaat aaagctgctt atatatttgc aacgggtaca ctcgcagcta gtgtagcaac
     4141 aggcggtagc gcaatcatgg cagcaacaat ggctgctggc atggtaccac cactagcaac
     4201 gtttgtagca actcttattt ttagaaataa atttacagct caagaacgtg atgcaggctt
     4261 aactaactct attttgggtg cttcattcat tactgaagga gctattccat ttgcagcggc
     4321 cgatccactt cgaatgattc cgagttttat tgccggaagt gctatcacag gtgcggtagt
     4381 aatgttctta aacattaaag tattagcacc tcacggagga gtttttgtta tcttccttgt
     4441 atcccaacct tggttctata ttattgcaat tattattgga acattaatca gcgcaggatt
     4501 aattggtgtt ctacgtaaga aaccaactgt ataaaatatg gaaatcgtct tttgaaacta
     4561 aaaaggcgat ttctttttag taatttctcg aattatttcc gaaaaattgc tatactggaa
     4621 gtgaagtgag gtgggcgtat tggaatttgg agaaaaatta attcatttaa gaaagaaaaa
     4681 taggttaaca caaaaacaac tggctgcgaa aatcgggaca actgcatcca caataagcaa
     4741 gtatgaaaat gataaccacc gaccgccaat ttttattttg gctaaattag cagaaattct
     4801 tggaacaaca accgattttt tattagatga tgtagctggt ttgcgagaaa agaattcggt
     4861 aaacgccttt cctttaattg gaaatcctga actcgagaaa tggtatttag aattacctta
     4921 tacatactca gaggatgagt tattaatgtt aaaacgaatt gcagatgcga ttgaaaataa
     4981 aaaataattt taaggagaag ccagctacta ttatgtaact ggcttttatt tggttttaaa
     5041 gttactgctc aggatcttga ggctcattag gatcttcgtt atttggaagc atggtgctgt
     5101 aataacgtct aggttcagca gcaagagtg
//
LOCUS       DASDXX010000178         5115 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.178, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000178 DASDXX010000000
VERSION     DASDXX010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5115
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.178"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            75..905
                     /locus_tag="U0280_002418"
     CDS             75..905
                     /locus_tag="U0280_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEM2272342.1"
                     /translation="MKKITPKAMCAWIPKREDETHKGDYGRVLIVAGNKQFGGAAIMA
                     AEACVKSGAGLTTVASDSVNRPALQTRIPECMFIDYENISSLSEQISQFDTILIGPGL
                     GLDAYAEEIFRLVLEKSTEQQQVIIDGDGITIYAKGENPHPAAKLTFTPHAGEWERLK
                     VLAPDAVTPTDVALAIDATIVLKGHRTKVYSGESAWQNMYGTPAMATGGMGDTLAGTI
                     CGLMAQTEKPITGTLAAVFLHSYIGEILAKKRYVVLPTEIAEELPTYLKIFSETDEHA
                     "
     gene            complement(943..1596)
                     /locus_tag="U0280_002419"
     CDS             complement(943..1596)
                     /locus_tag="U0280_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM2272343.1"
                     /translation="MKKTPFIISGIALLGFIFFMTGVMTGAKWIQHFDDYWNSIIRVG
                     ITNTKTTVISYLTDIGGVATICILTAVIVVIFVVIRKVDMAIWFGGIVLIGGALIPSI
                     IKNIVQRPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILA
                     FGLVIFIMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNQKLALWASRFKKA"
     gene            complement(1606..3219)
                     /locus_tag="U0280_002420"
     CDS             complement(1606..3219)
                     /locus_tag="U0280_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM2272344.1"
                     /translation="MGSKLLRGTFILTLGTLISKVLGILYVIPFYAIIGGDEPALLYN
                     FGYVPYQLFLSIATAGIPLAVAKYIAKYNAMEEYAVGRRLFKTGVYLMIFSGIVCFLA
                     MYGLAPTLARMQQLEGGYSLADGIQVIRAVSFALLIIPVMSLLRGFFQGYNSMGPSAV
                     SQVLEQVVRIMFLLAGTFIVMYVLDGNVVTAISIATFSAFVGAFASLLLLLWYFYKRK
                     PGLDRMLLEDRGTVKISIPTLYKDIILSAIPFIIVGSATSLYQLIDQFTLGRVLEYIG
                     ITPELVNSYVAIINFDVQKLIMIPGTLAIAFSMALVPLVTGAYVRKEYAQVKRQLNDV
                     FQILLFLTIPACFGIAMLARPLFTVFFSPSDNGTALLQLFAPIAILFSLFSVSAAVLQ
                     GIDEQRFTVLGLLLGLLAKSVLQMPLIMLFEAKGSIIATGIGYAVSCIFMLLIIKKYV
                     RFSFKVILRRTVLFFGMTALMGLVVIALYIMMSNFVSTDRKIPALMITIVCGGVGAIF
                     YGYMAFKLHLSDKLFGPRGTRLREKLRIR"
     gene            complement(3330..4943)
                     /locus_tag="U0280_002421"
     CDS             complement(3330..4943)
                     /locus_tag="U0280_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM2272345.1"
                     /translation="MSSKLMRGTAVLTAGTLLSKILGILYVIPFYWIAGGEQATILYQ
                     YGYVPYQIFLNIATAGVPLAVAKYISKYNSLNEYALSQRLYRSSTYLMIFTGIVSFLI
                     MYIFAPILAGMQEVSGGTSIEDITTVIRAVSFALLIIPVMSLLRGYFQGFHSMGPSAV
                     SQVIEQIARIVFLLASTYIVLHLIGGSLVTAMSLATFAAFVGAFFSLICLIWYYRKRK
                     PGIQKMIAGSDNKLRVSTFHLLKEISISAVPFIIVGMAMSLYQQIDLFTFARVLTYDG
                     MDGKTAEDLLSIFNFSVQKIIMIPGTLALAFSMTLVPLVAASFHKGRIREVHHHLTAV
                     FQVLLFLVVPACLGIALLADPLYTIFYGYNADGSMLLQFFAPFAIFFSLFSVTAAILQ
                     GIDEQRYTVLSLLLGLLTKSVLQMPLILLLGAKGGALATGLGYIVSVVFTVFIIKKYA
                     KYSFKYLFRRLILILGISAVMLLSVWLIYHGLILFLNPHARLTALVIVFVSAGFGAYI
                     YAFLAAKAGLLNYILGDRMYKIRKKLHLI"
BASE COUNT         1800 a         1065 c          886 g         1364 t
ORIGIN      
        1 aacatgattt atctgttctt tattttaccc ggttgagtag ataaaagcca gtgtcataag
       61 gaggttttac aaaaatgaaa aaaataacac caaaagcaat gtgcgcatgg attcctaaac
      121 gcgaagatga aacacataag ggtgactatg ggcgcgttct gattgtcgct ggaaataaac
      181 aatttggtgg tgctgctatt atggcggcag aagcttgtgt caaaagtggt gctggtttaa
      241 caaccgtggc ctccgatagt gtcaaccgac ctgctctcca aacaagaata cctgaatgca
      301 tgtttattga ttatgaaaat atctcgagtc tcagcgaaca aatcagccaa tttgatacga
      361 ttttaattgg tcctgggctt ggacttgatg cctatgcgga agaaattttt cgtttagttt
      421 tagaaaaatc aaccgaacag caacaagtaa ttattgatgg tgatgggatt actatttatg
      481 caaaaggaga aaatccccat cctgccgcga aactaacttt tacgcctcat gctggagaat
      541 gggaaaggct taaagtatta gcgccagatg ccgtaacacc aactgatgta gcgcttgcta
      601 tcgacgcaac gattgtttta aaagggcacc gtacaaaagt gtattctggc gagtctgctt
      661 ggcaaaatat gtacggaaca ccagcaatgg caacaggtgg tatgggtgat acgcttgccg
      721 gtacaatttg tggcttaatg gcgcaaactg aaaaaccgat taccggcact ctagccgcgg
      781 tctttcttca cagctatatc ggcgaaattt tggctaaaaa acgctatgtg gtacttccaa
      841 ccgaaattgc cgaagaatta ccgacttact tgaaaatttt tagcgaaact gacgaacatg
      901 cttaataaaa aatcctccct ttttgaaaga gaggattttt ttctatgctt ttttaaatct
      961 actcgcccat aatgctaatt tttgattcca aatgaagtaa catccaatgc cactgaaaag
     1021 tgctgcattg ccgattaaga atcctgcaac tacatcgctt ggaaagtgca cccctaagta
     1081 aacacgcgaa tacatgatga aaataaccag accaaaggct agaatgccaa ttgtaaatcg
     1141 aagccatctg cggctcacgt atagaattaa caagaaagca agcataccat aaaataccgt
     1201 agaaccggtc gaatgtccac ttggaaaact aaatccacct tgttcgatta atttatacgt
     1261 aggccttggt cgttgaacga tatttttaat aattgacggg ataagtgctc caccaattaa
     1321 aacaatacca ccaaaccaaa tcgccatatc tacttttcga atgacaacaa atataacgac
     1381 aatgactgct gttaaaatac aaatggtcgc gactccgcca atatccgtta gataagaaat
     1441 caccgttgtt ttcgtattcg taatgcctac acggataata ctgttccaat aatcatcaaa
     1501 atgttgaatc cactttgcac cggtcataac gcctgtcata aagaaaataa atccaaggag
     1561 agcgataccg ctaataataa atggtgtttt tttcatataa tcctcctagc gaattcttaa
     1621 tttttcacgc agtctcgttc cacgtggccc aaataattta tcggataagt ggagtttaaa
     1681 tgccatgtaa ccatagaaaa ttgcacctac cccgccgcaa acgattgtaa tcattaatgc
     1741 aggaattttc cggtctgttg atacaaagtt agacatcata atataaagcg caataactac
     1801 aagccccatt aaagccgtca tcccaaagaa aagtaccgtt cgccgtaaaa taactttgaa
     1861 cgaaaaacga acatatttct taataataag tagcatgaaa atacaagata ccgcatagcc
     1921 aattccggtt gcaataatgg atccctttgc ctcaaataac ataatgagcg gcatttgaag
     1981 aactgattta gccagtaaac cgagtaataa accaagtacg gtaaatcgtt gttcatcaat
     2041 cccttgaagg actgcagcag atacgctaaa taaggaaaat aaaatagcga ttggcgcaaa
     2101 aagttgtagt aatgctgtac cgttatcact tggcgagaaa aacaccgtaa atagcggtct
     2161 tgctagcatc gcaatcccaa aacaagctgg aattgttaaa aataataaaa tttgaaaaac
     2221 atcattaagt tgacgcttca cttgcgcata ttcttttctc acataagctc ccgtcactag
     2281 tgggacaagc gccatcgaaa acgcaatcgc gagtgtgccg ggaatcataa tcaatttttg
     2341 tacatcaaag ttaataattg ccacataaga attcactagt tccggcgtaa tgccaatata
     2401 ttccagtacc cgtcctaatg taaactggtc aatcaattga taaagggatg tagcagatcc
     2461 aacaataata aacggaatcg ccgaaagaat aatatcttta taaagcgtcg ggatagaaat
     2521 tttcacagtc cctctgtctt ctaaaagcat tcggtccagt ccaggttttc gtttgtaaaa
     2581 ataccaaaga agtaaaagta gacttgcaaa agcgccgaca aacgcggaga aagtagcaat
     2641 actaatagcc gttacgacat tcccatcaag tacatacatg acaataaatg ttccagcaag
     2701 taagaacata atccgaacaa cttgttctaa cacttgcgat acagcagaag gtcccatcga
     2761 attatatcct tggaaaaagc ctcgtagtaa actcattacc ggaataatta gtaaggcgaa
     2821 actaactgca cgaataactt gaatcccatc tgctaaacta taaccgccct ccagttgttg
     2881 catccgagca agcgttggag caagtccata cattgctagg aaacagacaa tgccggagaa
     2941 aatcattaaa tatacaccgg ttttaaataa acgtcgacct acagcgtatt cttccatcgc
     3001 attatatttt gctatatatt tagcaacagc cagcggaatc cctgcagtcg caatgcttaa
     3061 gaataattga tacggcacat aaccgaaatt atatagaagc gctggttcat ctcctccaat
     3121 aatcgcataa aacggaatca catacaatat tccgagcact ttagagatta atgtccctag
     3181 cgtcagaata aatgttcctc tgagcagttt tgaacccatc gtctaacttc ctttacatta
     3241 aattatatat ccttgtttac tttaccatta actcttttaa aaaaaaagaa caaacccaaa
     3301 taaatatcgg cttgttcttt acaaaaagtt taaatcaaat gaagtttttt acgaatttta
     3361 tacattcggt cccctaaaat atagtttaac agacctgctt ttgcagccaa aaacgcataa
     3421 atataggcac caaagccggc tgaaacaaaa acaataacta gtgctgttaa tcttgcatgt
     3481 ggatttaaaa ataaaatcaa gccatgataa atcaaccaga cactaagaag catcaccgca
     3541 ctaattccta aaataagtat aagccgtcta aataaatatt taaacgagta cttcgcatat
     3601 tttttaataa taaaaacggt gaatactacg gaaacaatat aaccaagtcc cgtagctaat
     3661 gccccacctt ttgcccctaa aagcaaaatt aatggcattt gcaacactga ttttgtcagt
     3721 aaaccaagta agagactaag aacagtgtac cgttgttcat caattccttg caaaatcgcg
     3781 gctgttacac taaataacga gaagaatatg gcaaatggcg caaaaaactg aagtaacatc
     3841 gaaccatctg cattataacc ataaaaaatg gtgtaaagcg gatccgctaa aagggcaatt
     3901 cctaaacaag ctggcacaac taaaaatagt aacacttgga aaacagccgt caaatgatga
     3961 tgaacttccc gaattcgccc tttatggaaa gatgccgcca ctaaaggcac aagtgtcatc
     4021 gaaaatgcca aggctaaagt tcccggtatc ataataattt tttgaacgga aaagttgaaa
     4081 attgaaagca aatcttccgc tgttttcccg tccataccat cgtaggttaa aacacgagca
     4141 aacgtaaata aatcaatttg ctgataaagg gacatcgcca ttccaacaat aataaatggc
     4201 accgcagata tcgaaatttc ttttaataga tgaaaagtcg aaacgcgcaa cttgttgtca
     4261 ctgccagcaa tcattttttg aatacccggc ttccgtttcc ggtaatacca aatgagacaa
     4321 atcaagctga aaaacgcacc aacaaaagcc gcaaaagtcg ctaaactcat cgctgtaaca
     4381 agacttccac caattaaatg taagacaata tacgtactag caagtaaaaa tacaattctc
     4441 gctatttgtt caattacttg tgacacggca gaaggtccca tcgaatgaaa tccttggaaa
     4501 taaccacgaa gtaaactcat tacaggaata ataagtaatg caaaacttac tgcgcgaata
     4561 accgtcgtaa tatcttcaat actcgttccg ccactaacct cttgcatccc cgcgagtatc
     4621 ggggcaaaaa tatacattat taaaaaacta acaatccctg tgaatatcat taaatacgta
     4681 cttgatctat acaatcgctg acttaaagca tattcattta acgaattata cttcgagata
     4741 tatttggcaa ctgctaaagg tactccagct gtcgcgatat ttaagaaaat ttggtaaggg
     4801 acatatccat attgatagag aatcgttgct tgttccccgc cggcaatcca gtaaaatgga
     4861 ataacatata aaatccctaa gatttttgaa agcaatgttc cagcggtaag cacagccgtt
     4921 cctcgcatta attttgaact cataatttct gttacctcga ttgatttttt cttttaagtc
     4981 tgtctgttaa atcgggttat gtaaaaatca ttcttacact actactttta tcgcattctt
     5041 ctaagattta aaatacaagt tacacttaaa gcaagtagta ctgctggtaa aataagcgaa
     5101 acaaagttca cacca
//
LOCUS       DASDXX010000179         5084 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.179, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000179 DASDXX010000000
VERSION     DASDXX010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5084)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5084)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5084
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.179"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            15..1151
                     /locus_tag="U0280_002422"
     CDS             15..1151
                     /locus_tag="U0280_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2272346.1"
                     /translation="MKFSRFRDSKLFFWTIEILAVVAILFVLLQMKYIFSPIGIIVST
                     LFMPILVAGFLFYLFNPLVLFLEKRKVPRLLSVILIFIAFITLVVLAVMQLGPTLADQ
                     VAELAKAIPGYWQDFEKWLQDLSNNSALKDLDIKQELEKLNISLPKIMSVVVDGVASS
                     FGAIVSFVSSFVMILVTVPFIVFYMFKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKT
                     ISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFIGAAPAVI
                     VALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIF
                     GMILGVPLYAVVKTIIVNVNRLIKLRRGQLAIDNNLPDPDTPKE"
     gene            complement(1194..1868)
                     /locus_tag="U0280_002423"
     CDS             complement(1194..1868)
                     /locus_tag="U0280_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2272347.1"
                     /translation="MGKKLSLYFVRHGQTYLNKNLRMQGWADTPLTPEGIEIVKESGR
                     GLAETEFVAAYSSDLHRTIATAGHLLKENKHAFGLTLEPLSEFRETFFGSYEGEKGDV
                     AWNEIAHHMGYANQEDLFKNADVRETMNGTKAADPTGDAEDFMTFWTRVEQGFLHVIN
                     RHRETGGNVLIVAHGNTIRNIVHELEPSMDEAVILDNASVTVLAYENGLFKLERLNDT
                     SHFKKA"
     gene            complement(1897..3246)
                     /gene="gorA"
                     /locus_tag="U0280_002424"
     CDS             complement(1897..3246)
                     /gene="gorA"
                     /locus_tag="U0280_002424"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEM2272348.1"
                     /translation="MEKHYDYIAIGGGSGGIASINRAAMHGAKCALIEPKFLGGTCVN
                     VGCVPKKVMWYGAQIKEAMDLYADAYGYQVDASFNFQKLVENREAYIERIRGSYKNGL
                     DNNKVEWIKGYAEFVDEKTLRVNGELVTADHILIATGGEPALPSIPGAEFGITSDGFF
                     ALKELPKKVAVVGAGYIAVELAGVLQQLGSETHLFVRKHAPLRNFDPLLTDTLTEIIE
                     QSDMTLHKHAVPQKVEKNPDGSLTLSLEDGRTETVDTLIWAIGRKPVIQGLQIEKAGV
                     KLLESGHIAVDKFQNTNVAGIYAVGDVTGHYELTPVAIAAGRRLSERLFNNKKDAHLN
                     YENIPTVVFSHPAIGTVGLTEPEAIEKYGKENIKVYTSSFTSMYTAITDHREPCRMKL
                     ICEGKTERVIGLHGIGYGVDEMIQGFAVAINMGATKADFDNTVAIHPTGSEEFVTMK"
     gene            complement(3282..3779)
                     /locus_tag="U0280_002425"
     CDS             complement(3282..3779)
                     /locus_tag="U0280_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine phosphatase family protein"
                     /protein_id="HEM2272349.1"
                     /translation="MANYINKERRQIDFDPFDLRIIAVPEVVAVQFKPRSEHTLLIRI
                     ADVGATYQPLKNESLFEAILPVHFNDINEEDDYWGLSDKEQAEMKLFNEVHRDLIYNF
                     VDEHPDFTQIVVHCHAGVSRSSAVAMAIAEHLRDTDTYEKLQVIKRYLPNPRVLAIMR
                     GEAYL"
     gene            complement(3910..4584)
                     /locus_tag="U0280_002426"
     CDS             complement(3910..4584)
                     /locus_tag="U0280_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEM2272350.1"
                     /translation="MAEKTIVEKLQLTKYKEAVILNQPNGADCFQNLANYEEKLADKQ
                     YDLIFDFVETLEELITFVQKVIAENKLAANGYLFFAYPKKGNKKFATYVHRDELMPAL
                     KTDEEGYVDGSTLKFTRMVALDETYTVVGLKEAAKLKAKGVKKNNPSADEYADHVPLV
                     AEFLADKGDLQAFYNNLATGYQRVWARYIYSAKQPATQEKRRLEMVDILSQGYKTKDL
                     YRQGKK"
     gene            complement(4699..5079)
                     /locus_tag="U0280_002427"
     CDS             complement(4699..5079)
                     /locus_tag="U0280_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM2272351.1"
                     /translation="MDLVKNGKVLELVHPNGNWTLIKEEGFSPVQITVAAVAACSGYV
                     YQTLLEKKRIEINDLSIHTDYEQDQESAVHVLTKINVTFTVDLVDKSNEAKAEKAVHL
                     VKDACPVAKSLDPSIEINEMVVFK"
BASE COUNT         1323 a         1083 c          921 g         1757 t
ORIGIN      
        1 aagaagggga gaatttgaaa ttttcacgat ttcgagatag taaattattt ttttggacaa
       61 ttgaaatttt agcggttgta gctattttgt tcgttctatt gcaaatgaag tacatatttt
      121 caccaatcgg catcatagtt tctacattgt ttatgccgat tttggtcgca gggttcctat
      181 tctatttatt taacccgctc gtattatttt tagaaaaaag aaaagtacct cgacttttga
      241 gtgttatttt aatttttatt gcctttatca cgcttgttgt tcttgcagta atgcaactcg
      301 gtccaacgct tgctgaccaa gtagctgaac tcgcaaaagc aataccaggt tactggcaag
      361 attttgaaaa atggctgcaa gatctctcga ataattctgc actaaaagat ttagacataa
      421 aacaagaact tgagaagctc aacatttcct taccaaaaat catgtctgtg gtcgttgacg
      481 gggtagcttc tagttttgga gccattgtct cctttgtctc tagttttgtt atgattcttg
      541 taactgtacc atttatcgtc ttttatatgt ttaaagatgg tcataagttc gttgagtcct
      601 ctggaagatt tttcccggca ggtattcgtt ctgaagcaaa acaaattatt aaagaaatga
      661 ataaaaccat ttctacttat attagttcac aagcgattga ttgtatgttt gttggtttat
      721 ttactttcat tggttattta attattggtc aaccgtatgc gcttctgttt ggttttattg
      781 caggtgcaac gaatattatt ccttatcttg gaccattcat tggagcagct cccgcagtta
      841 tcgtggcgct atttacttct ccagtccaag cactgctcgt tattgttgtc gtaacgattg
      901 tgcaacaaat tgactctaac ttactttctc catatattat gggtaaatca ctatcgattc
      961 acccactaac tattatcatt atcttgattg ttgctggaaa cttagcagga atctttggaa
     1021 tgattttagg tgttccactt tatgcggttg tgaaaacaat tattgtgaat gttaatcgtt
     1081 taattaaatt gcggcgaggt cagctggcga ttgataataa tcttcctgat ccggatacac
     1141 cgaaagaata aaaaaacgag ctttgggaaa ctagttccta aagctcgttt tttctatgct
     1201 tttttaaaat gggaagtgtc atttaaacgt tctaatttga ataagccgtt ttcgtaagct
     1261 agtacggtga cactcgcgtt atctaaaata accgcttcgt ccatggatgg ttcgagttcg
     1321 tggacgatgt tacgaatagt atttccgtga gcgacgataa gaacgttacc accagtttcg
     1381 cgatgacgat tgataacatg caagaaacct tgttctacac gtgtccagaa tgtcatgaaa
     1441 tcttccgcat ctcctgttgg gtcagctgct tttgtaccat tcattgtttc tcgtacatcg
     1501 gcatttttaa ataggtcttc ttgattcgca taacccatat gatgcgcaat ttcgttccag
     1561 gcaacatcgc ctttttcacc ttcgtaggag ccaaagaaag tttcccgaaa ttcacttaat
     1621 ggttctagtg ttaaaccaaa tgcgtgttta ttttctttta ataaatgccc tgctgttgca
     1681 atcgtacggt gtaagtcgct tgaatacgct gcaacgaatt ctgtttccgc aagtccgcga
     1741 ccactttctt tgactatttc aattccttct ggtgttagtg gcgtatcagc ccatccttgc
     1801 atgcgcaagt ttttatttaa gtaggtttga ccatgtctta caaaataaag tgataatttt
     1861 tttcccatta cgtacttcct cctccatcgt tgttttctat ttcattgtaa caaattcttc
     1921 ggatcctgtt gggtgaatcg caaccgtatt gtcgaaatcg gcttttgttg cgcccatatt
     1981 aatcgcaaca gcgaatcctt gaatcatctc gtccacaccg taaccaatcc cgtgcaagcc
     2041 gatgacacgc tctgttttcc cttcgcaaat taatttcatt cggcaaggtt cgcggtggtc
     2101 tgtgatggct gtatacattg aggtaaagct tgaagtgtac actttgatat tttctttgcc
     2161 atatttttcg attgcttctg gttctgttaa accgaccgtt ccaatagctg gatggctaaa
     2221 tacaacggtt gggatatttt catagtttaa atgtgcatct tttttgttgt tgaaaagacg
     2281 ttctgataaa cggcgccccg ctgcaattgc aactggagtt aattcataat gacccgttac
     2341 atcgccaact gcataaatcc ccgctacatt ggtgttttgg aatttatcta cggcgatatg
     2401 tccgctttct agaagtttta cgcccgcttt ttcgatttga agaccttgga tgacaggttt
     2461 acgtccgatc gcccaaataa gcgtatcaac ggtttctgtg cggccatcct ctaagctcaa
     2521 cgtcaaactg ccatctggat ttttttcgac tttttgcgga acggcgtgtt tatgcaacgt
     2581 catatccgat tgctcgataa tttcggttag tgtatctgtt aaaagtggat cgaaatttcg
     2641 gagtggcgca tgtttccgta caaataaatg cgtttctgag ccaagttgtt gtaatacacc
     2701 agctagttca accgcaatgt atcccgcgcc aacaaccgcc acttttttag gtagttcttt
     2761 taatgcaaaa aagccatctg aggtgatgcc aaattctgcg cccggaatgg aaggaagcgc
     2821 tggttcgccg cctgttgcaa ttaaaatatg atctgctgtc actagttcgc cgtttacgcg
     2881 caatgttttt tcatcgacaa attcggcata acctttaatc cattctactt tattattatc
     2941 cagcccattt ttgtaagaac ctcgaattcg ttcaatgtac gcttctcgat tttcgactag
     3001 tttttggaag ttgaagctcg cgtccacttg gtaaccatac gcatctgcgt ataaatccat
     3061 cgcttcttta atttgtgcgc cataccacat gacttttttc ggaacacaac caacatttac
     3121 acaagttcca cctaaaaatt ttggttcaat taatgcacat tttgctccgt gcatggctgc
     3181 gcgattaatc gaagcaattc cgccacttcc gccgccaatc gcaatataat cataatgctt
     3241 ttccatacaa aatctctcct aacatttctt cgttttcgtt tttataaata cgcttcgccc
     3301 cgcataatcg caagaacccg cggatttggt aagtatcgtt ttatcacttg aagtttttcg
     3361 tacgtgtccg tgtcgcgtaa atgttccgca atcgccatag caacagcgct acttcggctg
     3421 accccagcgt gacaatggac aacaatctgc gtaaaatctg ggtgctcatc cacaaaatta
     3481 taaatcaaat cgcgatgtac ctcgttaaat agtttcatct ccgcttgctc tttgtcacta
     3541 agcccccagt aatcatcttc ttcgttaata tcattaaagt gaacgggcaa aatagcttca
     3601 aaaagtgatt cgtttttgag tggctgatag gttgcgccga catccgcaat acgaataagt
     3661 aaagtatgct ctgagcgcgg cttaaactgc accgctacta cttctggtac ggcaattatc
     3721 cgtaaatcaa atggatcaaa atcaatttgg cgcctttctt tgttaatata attcgccatc
     3781 ctgcatgtcc ccttttccag tgcaacaaga ttttccttcg tcttattcct cttctattct
     3841 atcacgccta gacattttta cataaagaag cagtttcaaa cgcaaaaata accaaataaa
     3901 attatttggt tactttttcc cttgtcggta aagatctttc gttttataac cttggctcaa
     3961 aatatcaacc atctctaaac gtcttttttc ttgtgtcgct ggttgtttgg cagagtaaat
     4021 atagcgcgcc caaacccgct ggtatcctgt tgctagattg ttgtagaagg cttgtaaatc
     4081 acctttgtct gctagaaatt cggcgactag aggtacatgg tcggcgtatt catctgcgga
     4141 agggttattt ttcttaacgc ccttcgcttt tagttttgct gcttctttta gaccaactac
     4201 cgtgtacgtt tcatcgagcg cgaccattcg cgtgaatttg agtgtgctac cgtcgacgta
     4261 gccttcttca tcggttttaa gcgctggcat gagttcatcg cggtgtacat atgtagcgaa
     4321 ctttttattg ccttttttag gataggcgaa aaataaataa ccattcgcag caagtttatt
     4381 ttcagcaata actttttgca cgaacgtaat taattcttct agcgtttcca caaaatcgaa
     4441 aattaaatcg tattgtttgt ctgctagttt ttcttcgtaa tttgctagat tttggaaaca
     4501 atccgctcca tttggttgat ttaggataac tgcttcttta tatttagtca gttgtaattt
     4561 ttctactatt gttttctctg ccatattcca gcacctcgtt tgtattgttt ggtttcagta
     4621 tatagccttc cctttaagtt atcaagccaa actaaacaga aaaaagacca aacaccacgg
     4681 cttggtctat aaatcatttt atttaaaaac aaccatctcg ttaatttcaa tcgacggatc
     4741 taaacttttc gcaaccgggc aagcatcttt cactaaatgc accgcttttt ccgctttcgc
     4801 ttcattgctt ttatctacta aatccaccgt aaaagtaaca ttaattttcg ttaaaacatg
     4861 cacagcactt tcttgatctt gctcataatc ggtatgaatg cttaaatcat ttatctcaat
     4921 tcgttttttc tcaagtaatg tttgatagac atatccgcta caagcagcaa ccgcagccac
     4981 tgttatttga actggagaaa aaccttcttc tttaattaat gtccagttgc catttggatg
     5041 tacaagttct aacactttcc catttttcac taaatccatg attc
//
LOCUS       DASDXX010000180         5067 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.180, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000180 DASDXX010000000
VERSION     DASDXX010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5067
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.180"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..589
                     /locus_tag="U0280_002428"
     CDS             <1..589
                     /locus_tag="U0280_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEM2272352.1"
                     /translation="NTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNET
                     IMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTI
                     VESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAG
                     DDVKLVKGEIFNIKITTPYDLKVANAIIQERIAND"
     gene            582..1607
                     /locus_tag="U0280_002429"
     CDS             582..1607
                     /locus_tag="U0280_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEM2272353.1"
                     /translation="MINQVYRLVSERQFEVANVDESLTGDVVVVRPTHLSICAADQRY
                     YTGSRGKEMLSKKLPMALIHEGVGEVVYDATKEFKPGTKVVMIPNTPFENDPVIAENY
                     LRSSKFRSSGYDGLMQDYVFMRRDRVVALPDDINMKVAAFSELISVAVHAILRFEGKS
                     NANRESFGVWGDGNLGFITSLLLKNWYPDSKVYIFGKTPYKLDFFSFVDGAYAIDDVP
                     ADLVIDQAFECAGGMGSQYAVSQIIDVIKPEGTISLLGVSEYPIEFNSRMVLEKGLTV
                     YGSSRSGRVDFEKTVEFLSTNKRGVEYLQNLVGEVHTVHSIQDVIEAFEADLRSPWGK
                     SVMEWKI"
     gene            1750..3129
                     /locus_tag="U0280_002430"
     CDS             1750..3129
                     /locus_tag="U0280_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM2272354.1"
                     /translation="MKFAIIMPFYNAEKRLALSIDSIIKQSYSFLKHVEVLLINDGST
                     DGSGAIANRYATKYPNNIRVLTVPNGGPAKARNIGIHNVSEDTDFVGFLDADDIMSEN
                     MLASIVTFLNESNVSMLVPAFYYLDDFGSKKKISPHKLNYRFANGNRVADIEKEPEAI
                     HFYIGGTFLRYDCLKEFTFDESLYFAEDQLLITQFLLKYRSYGLIADAGYYYYRDLKQ
                     KGSLVSSSWKKPERYTPFLQKVYQTYLTDSKEIYGKVIPYVKYLIAYHAKLFFYKENT
                     YFREVLSESEQAIFVQELQKILQEVGASTIMELDTPLVVKEMMCSILQNGWPLQFETA
                     EKQDIPLVTVKENYRIGKTVAIELLLEEADIHDVKWVARTSFKEMPARLVKRKENQTI
                     WDVVVREKGTVEKAVFKLKPYQTKARLFYQDEEKDTPIADINIISSILGKLKRNRALK
                     RKFKQGGVS"
     gene            3129..4283
                     /locus_tag="U0280_002431"
     CDS             3129..4283
                     /locus_tag="U0280_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2272355.1"
                     /translation="MKLVQKVYYLLFRLVGFLPRKKDLVIFESFSGKQYSCNPRAIYE
                     YMEEHNPEYELLWSVNPKFVAVFEAYGVPYVKRFSISWLFKMGLAKYWISNSRLPLEL
                     PKPKKTIYVQTWHGTPLKKLGVDIDEVHIPGQTTEQYKADFVKEAQKWDYLISPNAYS
                     SAIFRRAFGFTGEMIESGYPRNDILFSTDKELKIANIKKELNIPEEKKVVLYAPTWRD
                     NDFYEAGRYKFDLKIDIAKMQEKLGNEIVLLVRMHYLVAEHFDFTQYGDFVRDASNHE
                     DIRDLYLVSDLLITDYSSVFFDYANLQRPMLFYTYDLAEYRDTLRGFYFDFEKNAPGP
                     LVETNEELMSELEKMLENPPKIEDSFLEQFCTWEDGHAAEKTVKIVFAEK"
     gene            4296..>5067
                     /locus_tag="U0280_002432"
     CDS             4296..>5067
                     /locus_tag="U0280_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2272356.1"
                     /translation="MKEVAIYIYMLAVKITGCLARIFPVKQKVVLLVSFPENSTAIIK
                     QMNEMKVTPKTVVFYDPRVDVTGFNFDFIQLKPKKIKHFISLMFHLNTAKVVITDNYF
                     VELAGLKERKNVTCIQIWHANGALKKFGWEDKAAQKRSARDKKRFQEVYRCFSKVLVG
                     SDEMAAIFQRSFLLEDSHMLKLGIPRTDNFFNQQQLKENAERTNTKLHLSNKKKLLYA
                     PTFRDEELHSTTLHLDIAKMKQALGNEYQLILKLHPSIS"
BASE COUNT         1684 a          739 c         1089 g         1555 t
ORIGIN      
        1 aaatactcga tttgataaaa ttcttatttc ctcaccaaaa gaatggatga accacgctga
       61 ggataatatt aaaaagtata tttctgatga tcgtattgta gtcattgaag gcggagaaga
      121 ccgcaatgaa acaattatga atggtattcg ttttgtggaa aaaacatatg gcttaacaga
      181 tgatgatatt atcgtgacgc atgatgctgt tcgtccattt ttaacacatc gtattattga
      241 agaaaatata gatgctgcac ttgaaacagg agcagtagat actgttattg aagcacttga
      301 tacaatcgtt gaatcaagca atcatgaggt gattacagat attccggtca gagatcacat
      361 gtatcaagga caaacaccgc aaagcttcaa tatgaaaaaa gtattcaatc actaccaaaa
      421 tctaacacca gagaaaaaac aaattctaac agatgcatgt aaaatttgtt tgcttgctgg
      481 cgatgatgtg aaattagtta aaggtgaaat tttcaacatt aagattacga cgccttatga
      541 tttgaaagta gcgaatgcga ttattcagga gcggatagcc aatgattaat caagtataca
      601 gacttgtgtc agagagacag tttgaagttg ccaatgtgga cgaatcatta acaggtgatg
      661 tggttgttgt tcgaccgact catttatcta tttgtgcggc agatcaacgt tactatacag
      721 gttctagagg gaaagaaatg ttatctaaaa aacttccaat ggcgcttatt catgaaggtg
      781 ttggggaagt tgtttatgat gcaacgaaag aatttaaacc aggtacaaaa gttgtcatga
      841 ttccaaatac accatttgag aatgatccag tcattgctga gaactattta cgttcgagta
      901 aattccgttc tagtggttat gatggtttaa tgcaggatta tgtgttcatg cgtcgtgatc
      961 gtgtggtggc actgccggat gatattaaca tgaaagtagc tgctttctca gaactgattt
     1021 ccgtggcagt tcacgctatt ttacgctttg aaggtaaaag taatgctaac cgggaatctt
     1081 tcggtgtgtg gggtgatggg aacttaggtt ttatcacttc tttactacta aaaaattggt
     1141 accctgatag caaagtttac atttttggga aaacaccata taaattagac ttcttttctt
     1201 ttgtggatgg tgcttatgca attgatgatg ttccggctga tttagttatt gatcaagcat
     1261 tcgaatgtgc tggaggaatg ggtagtcagt atgcggtgag tcaaattatt gatgtcatta
     1321 aaccagaagg aaccatttcc ttacttggtg tttcggagta tccgattgaa tttaattcac
     1381 gtatggtact tgaaaaagga ctaaccgttt atggaagtag tcgtagcggt cgtgttgatt
     1441 ttgagaaaac agtggagttc ttatcaacca ataaacgtgg ggtagaatat ctgcaaaatc
     1501 ttgttgggga agttcataca gttcattcca ttcaagatgt aatcgaagcg tttgaagctg
     1561 atttacgcag tccatggggc aagagcgtta tggagtggaa gatataataa aacattgggg
     1621 agtttaggct gtaagctaat gaatttgttt gctaaagtat tttaggaagc aagaaaatcg
     1681 aatgtaagta ttcgatggtc atttgctaaa tccttaactt cccagctttt atatggagag
     1741 ggaaaaagaa tgaaatttgc tattataatg cctttttaca atgccgaaaa aaggttagca
     1801 ctatccatag atagtataat taagcagtct tacagctttt tgaagcatgt ggaagtactg
     1861 cttattaatg atggaagcac ggatggaagt ggcgctatcg caaatcgtta cgctacaaaa
     1921 tatcctaaca atattcgcgt gttgaccgtt ccaaatggtg gaccggcaaa agcgcgtaat
     1981 atcggaatac ataatgtaag tgaagatact gattttgttg gttttttaga cgccgatgat
     2041 ataatgtcag agaatatgtt agcgagtata gttacatttc taaatgagtc taacgtttct
     2101 atgcttgtgc cagcttttta ttacttagat gattttggaa gtaagaaaaa aatttcacca
     2161 cataaattaa attaccgttt tgcgaatgga aatcgagttg ctgatattga aaaagaaccg
     2221 gaagcaattc atttttatat tggcggtact tttttacgtt atgattgttt gaaagaattt
     2281 acttttgatg agtcgcttta ttttgcggag gatcagttat taattaccca gttcttactg
     2341 aaatatcgga gctatggctt gattgcggat gcggggtatt attactatcg tgatctaaag
     2401 caaaaaggtt ctttagtaag ttcgtcttgg aaaaaaccag aacgatacac gccttttttg
     2461 cagaaagtat atcaaaccta tttaactgac tcgaaagaaa tatatggcaa agtgattccc
     2521 tatgtgaagt atctaattgc gtaccatgca aaattgtttt tttataaaga aaatacttat
     2581 ttccgggaag ttttaagcga gtcggagcaa gcgattttcg tgcaagaatt acaaaagatt
     2641 ttgcaggaag tcggagcaag tacgattatg gaattagaca cacctctcgt agtaaaagaa
     2701 atgatgtgct cgattttgca aaatggatgg ccgctgcaat ttgaaacggc tgaaaaacaa
     2761 gatattccac ttgtgacagt aaaagaaaat tatcgtatcg gcaaaacagt cgcgattgaa
     2821 ttacttctag aagaagcgga tattcatgac gtgaaatggg ttgctcgcac gtcttttaaa
     2881 gaaatgccag ctcggttagt caaacgaaaa gagaatcaaa ctatttggga tgtcgttgtc
     2941 agagaaaaag gcacagtaga aaaagctgta tttaaattaa aaccgtatca aacgaaagcg
     3001 cgtctttttt atcaagatga ggaaaaggat acgcctatcg ccgacataaa tatcataagt
     3061 agcatcttag ggaaattaaa acgaaatcga gcgttaaagc gaaagtttaa acagggggga
     3121 gtatcctgat gaagttagta caaaaagtgt attatttgtt gtttagatta gtgggatttt
     3181 taccgcgaaa aaaagattta gtgatatttg aaagcttttc aggtaagcaa tatagctgta
     3241 atccacgggc tatttatgaa tatatggagg agcataatcc ggaatacgaa ttattatgga
     3301 gtgttaatcc aaaattcgtg gctgtttttg aagcttacgg agttccttat gttaaacgtt
     3361 tttctattag ctggttattt aaaatggggc ttgctaagta ttggatttct aatagtagac
     3421 ttcctttaga actaccaaaa ccgaaaaaaa caatctatgt gcaaacttgg catggaacac
     3481 ccttaaaaaa attaggcgtg gatattgatg aagtgcacat tccagggcaa acaacggaac
     3541 agtacaaagc tgattttgta aaagaagcac agaaatggga ctacttaatt tctcctaatg
     3601 cttattctag tgctattttt agacgggcat ttggttttac tggagagatg attgagtcgg
     3661 gatatccgcg gaatgatatt ttatttagta ccgataaaga gctgaaaata gctaatatta
     3721 aaaaagagct aaatatccca gaagagaaaa aagttgtttt atatgcgcca acatggcgtg
     3781 ataatgattt ttatgaagct ggaagatata aatttgattt aaaaatcgat atcgcaaaaa
     3841 tgcaagaaaa attggggaat gagattgttt tacttgttcg catgcattat ttagttgcgg
     3901 aacattttga tttcacgcaa tatggtgatt ttgtccgcga tgcttcaaac catgaagata
     3961 tacgcgattt atacttagtg agtgatttgt tgattactga ttattcctct gtattttttg
     4021 attatgcgaa tttacagcgt cctatgcttt tttatacgta tgatttggcg gaatatcgtg
     4081 atacgttacg tggcttttac tttgattttg aaaaaaatgc tcctggtccg cttgtggaaa
     4141 cgaatgaaga attaatgagt gaacttgaaa aaatgcttga aaatccacct aaaatagaag
     4201 acagcttttt ggagcagttt tgtacttggg aagatggtca tgcagcagag aaaacagtga
     4261 aaatcgtttt tgctgaaaaa taggtggtgg gaattttgaa agaagtagca atttatattt
     4321 atatgcttgc tgttaagata actggctgtt tggcgaggat ttttccagtt aaacaaaaag
     4381 tggtactgtt agttagcttt ccggaaaatt ccactgcaat tataaagcaa atgaacgaaa
     4441 tgaaagttac gccaaaaacg gttgttttct atgatccaag agtggatgtg accggtttta
     4501 attttgattt tatccaatta aagccaaaaa aaatcaagca ctttatctcg ttaatgttcc
     4561 atctgaatac ggcaaaagtt gtcattacgg ataattattt cgtggaatta gctggattaa
     4621 aagaacgtaa aaatgtgacg tgcattcaaa tttggcatgc gaatggggca ttgaaaaaat
     4681 tcggctggga agataaagca gcgcaaaaaa gaagcgcgcg cgataaaaaa agatttcaag
     4741 aagtgtacag atgtttttca aaagtgctcg tcggatcgga tgaaatggca gcaattttcc
     4801 aaaggtcgtt tttactagaa gattcgcata tgttgaagct aggaattccg agaacggaca
     4861 atttcttcaa ccaacaacaa ttgaaagaaa atgccgaaag gacaaatacc aaattacatc
     4921 tttccaataa aaagaaatta ttatatgcgc cgacgttccg cgatgaggaa cttcatagta
     4981 ctacgcttca tttagatatc gcgaagatga aacaagcact cggaaatgag taccaattaa
     5041 ttttaaaatt acatccatct attagta
//
LOCUS       DASDXX010000181         5034 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.181, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000181 DASDXX010000000
VERSION     DASDXX010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5034
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.181"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(261..707)
                     /gene="perR"
                     /locus_tag="U0280_002433"
     CDS             complement(261..707)
                     /gene="perR"
                     /locus_tag="U0280_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEM2272357.1"
                     /translation="MAVSNATLKEAVDVLKKTGVRITPQRHAILEFLINSHTHPTADD
                     IYRALEGNFPNMSVATVYNNLRVFRDAGLIKELSYGDASSRFDFSTSNHYHAICNVCG
                     KIVDFQYPGLDEVEHFAAHMTGYEIDNHRLEVYGICPACKEKQSNN"
     gene            complement(790..1731)
                     /locus_tag="U0280_002434"
     CDS             complement(790..1731)
                     /locus_tag="U0280_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HEM2272358.1"
                     /translation="MNILFTLDVPEHLQTLQAEKFPEDTFYYESNDHFANLAEIDIIV
                     TYGSNITEAKIKQASNLKFIMVFSAGVDSLPREIIQERKIKVANVRGIHAVPMGEYAL
                     SFMLSHVKKATFFYQMQKEKNWASEEPITELAGKTLVVAGTGAIGAKVAEFAQAFDME
                     IIGVNTTGHPVKPFSKTYAMSDIEKVAPLADFFVSVLPHTDKTTAIYSLSFFRKMKDN
                     AVFINIGRGSAVELKVLEQASKEQLINHFYLDVVPEEPLSEDNYLWEASNVTITPHVS
                     GHSDKYLERSFKIWFENIKHLKENTKLRNEIDLNKGY"
     gene            1876..3174
                     /locus_tag="U0280_002435"
     CDS             1876..3174
                     /locus_tag="U0280_002435"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEM2272359.1"
                     /translation="MDHSMSKKLHDEALLHIVGGVNSPSRSNKGVGGGIPVTMERASG
                     AYFYDVDGNKYIDYLAAFGPIITGHAHPHITEAITKAAQNGVLYGTPTKHEITFAKML
                     KEAIPSLEKVRFTNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHFDLVLVEAGSGP
                     STLGIPDSAGVTKSTAEEVITVPFNDLASFKEALAVWSDQVAAVLVEPIVGNFGMVAP
                     EDGFLEAVNELAHANGSLVIYDEVITAFRFMYGGAQNYLGVIPDLTAMGKIIGGGLPI
                     GAYGGRIDIMEKVAPLGPAYQAGTHAGNPASILSGIACLEVLQEEGLYERFEKYGSML
                     KDGIEKAALKHGIAVTVNQIVGALTVYFTEDPVTNYAEAGATNGELFGRFFKGMLEEG
                     INLAPSKYEAWFITSAHSEADILETIQAVDTVFGKMVQDN"
     gene            3280..4368
                     /locus_tag="U0280_002436"
     CDS             3280..4368
                     /locus_tag="U0280_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM2272360.1"
                     /translation="MKFGARILKTGIAITLALFIAQLCNSPSPSLAGISAVFAIQPSI
                     YRSYRTILERAQGNVIGAIIAIIFGLYIGNDFILIGVASIICVALLMQFRLENTIGLA
                     VVTLIIVMDSPGNDFLEIALIRFGTIMLGLLAAFIVNLFFLPPKYEVSLFQLIYNTNS
                     EIVRWIKLNLRHAADFPLLKKDMEWMQKQLNQTRNLYGLYREERTFLKKNAISKGRKI
                     AVYRQMLLCSQKGFELLKIQHRYENDYLQLPPDKQELIRQHIDYLTDKHEQLLLTYID
                     KVSIDLEYVESHLAQDPQDLMQLFLREMRETEKDEYEDMMDKYHLMRIIASVFAYQET
                     IDYLEKLIHSFKLRHTKENQIDINVNEE"
     gene            complement(4410..4937)
                     /locus_tag="U0280_002437"
     CDS             complement(4410..4937)
                     /locus_tag="U0280_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEM2272361.1"
                     /translation="MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDH
                     TLVVEADGRKWVTREPSICYFHSDYWFNVISMIREDGIYHYCNLGTPFAVDEQALKYI
                     DYDLDIKVFPDGRFHLLDEGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFS
                     PDYIDIWYEKYKEYR"
BASE COUNT         1509 a          904 c          944 g         1677 t
ORIGIN      
        1 gtcgctttca tgcttgttat gcgaatgttt tcgtttgttt tttgcgactt ttaaatcata
       61 tcatttcagc aactatctgt caacaacttt ttgaatttat tttatgaata aaattcattt
      121 aaatcgctgc tatcgtagcg ccgaaaacta atatatcaag ttttgagata tatgtcaacc
      181 gaattatgca taaaattaaa taaaaatgaa aaaaattgca aaaaacacaa aaaaacacct
      241 agctaggcta agtgttttga ttaattattt gattgttttt ctttacaggc tggacatata
      301 ccatatactt ccagtctgtg attatctatt tcatatccgg tcatatgtgc tgcgaaatgt
      361 tctacttcat ctaaacctgg atattgaaaa tcaactattt ttccacacac attacaaatt
      421 gcgtggtaat gattagatgt agaaaaatca aatcgactag atgcatcgcc ataggataat
      481 tctttaatta gaccagcatc ccggaaaacg cgtaaattat tatatacagt tgctacgctc
      541 atgttaggga agtttccttc taaagcccga taaatatcat ccgcggttgg gtgtgtatgt
      601 gagttaatta agaattcaag tatagcatga cgctgaggag tgattcttac tcctgttttc
      661 tttaagacat ctactgcctc ttttagagtt gcattagaca ccgccatgca ctcccttcca
      721 aaaataatta ttatctttat aataccggaa ataacgctta actgtcaata gaatggcaga
      781 atttatagct taataacctt tattcaaatc aatttcattc cgtaatttgg tattttcttt
      841 tagatgtttg atattttcaa accaaatctt aaagctacgt tctaaatatt tatccgaatg
      901 tccagataca tgaggtgtga tagtaacgtt acttgcttcc cataaataat tgtcttcgga
      961 aagtggctct tcaggtacaa catctaaata aaaatggttt attaattgct cttttgatgc
     1021 ttgttctaaa acctttaatt caactgcgct acctcttcct atattgataa aaactgcatt
     1081 atctttcatt ttccggaaaa atgataagga ataaatagct gttgttttgt ctgtatgagg
     1141 taaaacacta acaaaaaaat ctgctaatgg agccactttt tcgatatcgg acatggcata
     1201 tgttttacta aagggcttca caggatgtcc agttgtatta acacctataa tttccatatc
     1261 aaatgcttga gcgaactcgg ccacttttgc tccaatggct ccagttccag ctactaccaa
     1321 agtttttcca gctaactctg ttattggttc ttcacttgcc caattttttt ctttttgcat
     1381 ttgatagaag aaagtggctt tttttacgtg tgataacatg aaagatagcg cgtattctcc
     1441 cattggcaca gcgtggattc cgcgtacatt agcaacttta atttttcttt cttgaattat
     1501 ttccctcggc aaactatcta ctcccgcaga aaaaaccatg ataaatttta aattgcttgc
     1561 ttgtttaatt ttggcttcag taatgttaga tccgtatgtg acgatgatat ctatctccgc
     1621 taaattggca aaatgatcat tgctctcata ataaaaagta tcctctggaa atttctctgc
     1681 ttgcaaagtc tgtaaatgtt ctgggacatc taatgtaaat aaaatgttca ttttgcgcca
     1741 cacttcctct ctttagctat atactaattt tatgcttttt ttcatttaac ggcaattaaa
     1801 ttgttttttc gattgcggca tcttattttt tcgcatagaa tataagaggt attaaaattt
     1861 tgaggagatg acgaaatgga tcattcaatg tcaaaaaaat tgcatgatga agcactttta
     1921 catatagttg gcggggttaa tagcccatct aggtcaaata aaggggttgg cggcggaatt
     1981 cctgtaacaa tggaacgggc tagcggcgct tatttttatg atgtggatgg gaataagtat
     2041 attgactact tagctgcgtt tggaccaatc attactggac atgcacatcc tcatattaca
     2101 gaagcaatta caaaagctgc gcaaaatggt gttttgtacg gaacacctac taaacacgaa
     2161 atcacttttg cgaaaatgtt aaaagaggcc attccttcac ttgagaaggt ccgttttaca
     2221 aattccggga cggaagctgt tatgacaacg attcgtgtcg ctcgcgctta tacaggcaga
     2281 gataaaatca ttaaattcgc tgggtgttac cacggccact ttgatttagt actcgtggaa
     2341 gctggttctg gaccttctac gcttggcatt ccagactccg ctggggtaac gaaatcaacc
     2401 gcagaagaag ttattactgt accttttaat gaccttgcat cgtttaaaga ggcattagct
     2461 gtttggagcg atcaagttgc tgctgtttta gtagaaccta ttgttgggaa ttttggaatg
     2521 gttgcgccag aagatggttt tttagaagct gttaatgaac tcgcacatgc caatggttct
     2581 ttagtaattt atgatgaagt tattacggct ttccgtttta tgtacggcgg cgcgcagaac
     2641 tatttaggtg ttattccaga tttgactgct atgggtaaaa ttattggtgg cgggcttccg
     2701 attggtgctt acggtggtcg gattgatatc atggaaaaag tagcaccact cggaccggct
     2761 tatcaggctg ggacgcatgc ggggaatccg gcatctattc tttcaggaat tgcttgtctc
     2821 gaagttttac aagaagaagg actgtatgag cgctttgaaa aatatggctc gatgctgaaa
     2881 gatggcattg aaaaagccgc gctaaaacac ggcattgctg ttacggttaa ccaaattgtc
     2941 ggtgctctaa ctgtttactt tacggaagat cctgtgacta attatgctga ggctggcgct
     3001 acaaatggcg agttattcgg tcgtttcttt aaaggaatgc tagaggaagg cattaatttg
     3061 gcgccttcta aatatgaagc atggttcatc acttccgcac actcggaagc tgatatttta
     3121 gaaacaatcc aagcagttga tactgttttt ggaaaaatgg ttcaagataa ctaggtaata
     3181 ttactttata aactggtgag aaacgttata atagaagaag aatgagcggg aaaacttaaa
     3241 aatcccgctc aaatagtcta tagaaaggaa taaccttcca tgaaattcgg agctagaatt
     3301 ttgaaaactg gtattgcaat cacattggcg ctttttatcg ctcaactttg caattcacct
     3361 tctccatctc tggcaggcat ttccgccgtt tttgctatcc aaccttctat ttataggtcc
     3421 tatcgaacta ttttagaacg ggcgcaaggg aacgtaattg gagccatcat tgcaattatt
     3481 tttggacttt atattggtaa tgattttatt ttaattggtg tcgcttcgat tatctgtgtt
     3541 gctttattaa tgcaattccg cttggagaat acgattggcc ttgcagtcgt gacactcatt
     3601 attgtaatgg attctcctgg taatgacttt ttagaaatcg cacttattcg ttttgggaca
     3661 attatgttag gtttacttgc ggcatttatt gtcaatctat tctttttacc accgaaatat
     3721 gaagtttcat tgtttcagtt aatttataat acgaatagtg aaatcgttcg ttggattaaa
     3781 ttaaacttgc gtcatgctgc ggacttccct cttctaaaaa aagatatgga gtggatgcaa
     3841 aaacagttaa atcaaacgcg taacttatat ggtttataca gagaagagcg tactttttta
     3901 aagaaaaatg ccatttcaaa agggcggaaa attgctgtat ataggcaaat gttgctttgt
     3961 tctcaaaaag gttttgagct tttaaaaatc caacatcgct atgaaaatga ttatttgcaa
     4021 ctgcctccag ataagcaaga gttaatcaga caacatatcg attacttaac ggataaacat
     4081 gaacaacttt tactgacata catcgataaa gtttcgattg atcttgaata tgtagagtcg
     4141 catttagcac aggatcccca agatttgatg cagcttttct tgcgtgagat gagggaaaca
     4201 gaaaaagatg agtatgagga tatgatggat aaataccatt taatgcgtat tattgcctct
     4261 gtttttgctt accaagagac aatcgactat ttagaaaaat taattcatag ttttaaactc
     4321 agacacacga aagaaaacca aattgatatt aatgtcaatg aagaataaac aaaaaacgag
     4381 cttggagata gactccaaag ctcgtttttt taacggtatt ctttgtactt ttcataccaa
     4441 atgtcaatgt agtcagggga aaacggacct tttttgtcca aaatccagtg gcttaacaca
     4501 tccacattat gtcgaagtat ccggtcaatt gagtctgggt acttcatttg gcgacggtgt
     4561 tgttcgtatt cgccctcatc aagcaaatga aaccttccat ctgggaaaac cttaatatcg
     4621 aggtcatagt caatgtactt aagcgcttgt tcatctactg caaatggtgt ccctagattg
     4681 cagtaatgat aaatgccgtc ttctctaatc atggaaatta cattaaacca gtaatcacta
     4741 tgaaaatagc agatagatgg ttcgcgcgtt acccatttac gtccgtctgc ttccacaact
     4801 aatgtgtggt cgtttccgcc gataataata ttctccgtag atttaagcac cactgtcttt
     4861 ttccaagtac gatgaagttt tccgttatgt ttgtagctct tgatttgtat tatttctttc
     4921 tctttgggta agtacatcct ttatcctact ttcctcatgt actatcaaaa tcattattat
     4981 tataacataa ggcaagactg caaaaaaaca atatcgtgct gaaacggaat attt
//
LOCUS       DASDXX010000182         5028 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.182, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000182 DASDXX010000000
VERSION     DASDXX010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5028
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.182"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..865)
                     /locus_tag="U0280_002438"
     CDS             complement(<1..865)
                     /locus_tag="U0280_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272362.1"
                     /translation="MIKLINVVKKFGKIEAVKGINLEVEKGSLFAFLGENGAGKSTTL
                     SMICTESEPTSGEIFIDDEKLTFKNRKLFRQKLGVVFQENVLDDLLTVRENLYNRASL
                     YGKTKAEITERLALVSSIMGIEDILNRRFEKLSGGQKRRAEIARAIMHDPEILLLDEP
                     TTGLDPKTRVSVWKIIDYLREELGMTVFLTTHYLEEAKDADQLAVIHKGKIIAQGTPA
                     NIRSRFSVDKIFFYDAKVAELQKIMKKMNLPFKVTNRTMRVDVIDENVEILAILNQAI
                     GFYDSFEVIKGN"
     gene            complement(862..1290)
                     /locus_tag="U0280_002439"
     CDS             complement(862..1290)
                     /locus_tag="U0280_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3021 family protein"
                     /protein_id="HEM2272363.1"
                     /translation="MSTKLIQFIQSACLIFSASIITMICSYIATGESETVAIRDIFIM
                     LGFSIVTTFIQQLLFNNSVKTKRAFYSRLFAFFLFIGAAILGLGWLLDWYHNIAGFMI
                     ILGFICVTFLVMHIFFSFRDVKFSNEINQKLAEMRERETK"
     gene            complement(1287..1742)
                     /locus_tag="U0280_002440"
     CDS             complement(1287..1742)
                     /locus_tag="U0280_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator
                     DNA-binding domain-containing protein"
                     /protein_id="HEM2272364.1"
                     /translation="MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISV
                     KKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIHWKLYELEEKFKESSFFRCSKSM
                     ILNIEWIEKIAPGFNGKFEAKLLNREKVIISRQYAKVLKQKLNMGGKRK"
     gene            complement(1875..2354)
                     /locus_tag="U0280_002441"
     CDS             complement(1875..2354)
                     /locus_tag="U0280_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEM2272365.1"
                     /translation="MNVHDFSEKAMNGKEIALSDYKGKVLLIVNTASKCGLTPQLEGL
                     EAMYKKLGGANFEILGFPCNQFLRQDPGSDEEILEFCQMNYGVTFQMFSKIKVKGKDA
                     SPLYKYLTEQTGGKKVEWNFAKFLIDENGEVVERFPSKMKPADFEDKVEALVAKVNN"
     gene            complement(2367..3419)
                     /locus_tag="U0280_002442"
     CDS             complement(2367..3419)
                     /locus_tag="U0280_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM2272366.1"
                     /translation="MSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIP
                     YHLNNKGGLIVTLPGKDDTKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIE
                     GEYCTIETSDGDLYSGTILMHQTSVHVYKDAGTAERNDKNMEVRLDVKALDADKVRAL
                     GIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENKLELPHTTHFLI
                     SNNEEIGYGGNSNIPSETVEYLAVDMGALGDGQTSDEYTVSICAKDGSGPYHLGLRKH
                     LVELAKSNNIDYKVDIYPFYASDASAAINAGNDIVHGLIGPGIDASHAYERTHRDSLY
                     HTEKLVYAYLFSNILK"
     gene            3560..>5028
                     /locus_tag="U0280_002443"
     CDS             3560..>5028
                     /locus_tag="U0280_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272367.1"
                     /translation="MEQTKVKAVTIAVFVATFMAAIEGTIVSTAMPTIVSQLDGIELM
                     NWIFSVYLLTSAVTVPIYGKLSDLYGRKNIFVIATIIFIIGSSLCGFAQNMEQLIIFR
                     AIQGIGAGGILPSTMTIIADVYPFEKRAKVLGFMGSAWGIAGVFGPLVGGFLVDQLSW
                     HWIFFINVPIGILTILLILLYLREKVEHVKLPIDYLGASLFTVALLGLLFALQRAGES
                     LNWIEPLVVILFAVSIVLFIAFYFVEKRAKDPIMPFVLFKNPVVLIGNLIGFLISAFL
                     IGINVYIPMWAQGMLGHGATIAGFMLAPLSVTWIIGSFIGGKLLMTLGNRHTVGIGVL
                     ITAASGLILALFPASTNDIFFYLNSAFMGFGFGIIFTTTTVTVQDAVPRFQTGIATAS
                     NTLFRTVGQTIGVAVFGTIFNSVLTSEFRDAAGSEVNRSNLNQLISPQTSGNVSADLV
                     DPLRDILYSGLHMVFWVMFACCIVSYFIHFILPKKHISG"
BASE COUNT         1429 a         1003 c          848 g         1748 t
ORIGIN      
        1 agttcccttt aatcacctca aaagagtcgt aaaatcctat agcctgattt aaaatagcca
       61 atatttcgac attttcatct atgacatcta cacgcatcgt tctgttagtc actttaaatg
      121 gtaaattcat ttttttcatt attttttgaa gttctgcaac ttttgcatcg taaaagaaaa
      181 ttttgtctac agaaaaacga cttctaatgt ttgctggtgt cccttgcgcg atgattttcc
      241 ccttatggat tacagccaac tgatccgcat ctttggcttc ttctaaataa tgtgtcgtta
      301 aaaacaccgt cattcctaat tcttctcgca aataatcaat aattttccat acactcactc
      361 tagtttttgg gtccagtccg gtcgttggct catctagcag caaaatttct gggtcatgca
      421 taattgccct agcaatttcc gcgcgacgtt tttgaccacc agacaatttt tcaaaacgcc
      481 gatttaaaat atcctcaatg cccataatag aagaaactag cgctaatcgt tccgtaattt
      541 ctgcttttgt tttcccatat aaactagcac gattatataa attttcgcgc accgtgagta
      601 agtcatccaa cacattttct tggaaaacaa cgcctagttt ttgtctaaat aatttacggt
      661 ttttaaatgt caatttttca tcatcaatga aaatttctcc cgaagttggt tcgctttctg
      721 tgcaaatcat gctaagcgta gtcgatttac ccgcaccatt ttcgcctaga aaagcaaata
      781 acgagccttt ttcaacttct aaattaatac ctttgacagc ctcgattttg ccaaattttt
      841 taactacatt gatcaatttt atcattttgt ctccctttct cgcatttctg ctagtttttg
      901 attaatttca ttactgaatt tcacatcacg gaagctgaag aaaatatgca ttacaaggaa
      961 agtcacacaa ataaagccca aaataatcat aaacccagct atgttatgat accaatccag
     1021 caaccaacca agccctaaaa ttgctgcgcc aataaagagg aagaaagcaa acaaacgact
     1081 gtaaaaagca cgtttcgttt tcactgagtt attaaataat aattgctgta tgaatgttgt
     1141 cacaatacta aaacctagca taataaaaat atcccggatt gcgaccgttt ctgattctcc
     1201 agttgcgatg taagagcaga tcatcgtgat aatagaggca gaaaaaataa ggcatgctga
     1261 ttgtataaat tgaattagtt ttgtactcat ttccgcttac ctcccatgtt taatttttgc
     1321 tttaaaacct tcgcgtactg ccgagaaata attacttttt ctcgatttaa aagtttcgct
     1381 tcaaatttac cgttgaagcc aggggcaatc ttttcaatcc attcaatatt taagatcatt
     1441 gatttcgaac atctgaaaaa agaactctcc ttgaattttt cttccagttc atataatttc
     1501 caatggattt cataaatttc tttttccgta taaacaaaaa tcttactttc gactgcctca
     1561 aaatataaaa tggcttttgg ttctagtaaa taagtggctc catccttttt gactgagatt
     1621 ttttcagctg actcttctat tcctattacc atgttcgtta cttcttctaa attatcggga
     1681 tggcaataca catccacttc accaactgct aaattattat tttgcttcac atggaatttc
     1741 atctggttgc ctcccttttt attttattat aaacgccatg tcaaaaacta caagctgatt
     1801 tcagtaacat gcatttttaa ctaactaaga tgcaaaaaac tcggtagtac tataatagca
     1861 ctaccgagtt ttccttaatt atttactttc gcaacaagtg cttccacttt atcctcaaaa
     1921 tctgctggtt tcattttaga tgggaaacgt tcaacaactt ctccattttc atcaattaag
     1981 aatttcgcaa agttccattc tactttttta ccacccgttt gttcggttaa atatttataa
     2041 agtgggctgg catctttgcc ttttacttta attttggaaa acatttggaa agtcacacca
     2101 taattcattt ggcaaaattc taaaatttcc tcatcactgc caggatcttg tcgcaaaaac
     2161 tggttacacg ggaaaccgag gatttcaaaa ttagcgccac ccaatttttt atacattgct
     2221 tcgagacctt ctaattgggg tgttaagcca catttactcg cagtattcac gatgagtaat
     2281 accttacctt tataatcact taaagctatt tctttgccat tcattgcttt ttcagaaaaa
     2341 tcatggacat tcatatggga ttcctcctat ttcaatatat ttgaaaataa atatgcataa
     2401 actaattttt ctgtatggta aagtgaatcg cggtgtgtgc gttcatatgc atggctagca
     2461 tcaatacctg gtccaatcaa accatggaca atatcattac cagcattaat tgccgcactc
     2521 gcatcagatg cataaaacgg ataaatatcc actttataat caatattatt gcttttagca
     2581 agctccacta aatgtttgcg caaaccaagg tgatacgggc cactaccatc ttttgcacaa
     2641 atagaaacag tgtattcatc agacgtttgt ccgtcaccaa gtgctcccat gtcgacagct
     2701 aaatattcca ccgtttcaga cggaatgtta gaattaccac catagccaat ttcttcatta
     2761 ttagagatga ggaaatgggt tgtatgagga agctccagtt tattttcgtg aatatgattg
     2821 attagttgta ataaaatcgc gacacttgct ttatcatcca aatggcgaga tttgatatat
     2881 tcatcattaa taatttgcac gcgcggatca aacgaaacaa aatcccctac ttctattcca
     2941 agcgcacgaa ctttgtctgc atctaatgct tttacatcta agcgaacttc catatttttg
     3001 tcattacgct cagcagtccc agcatcttta tagacatgga cagaagtttg atgcattaaa
     3061 atggtgccac tatacaaatc tccatcactt gtctcaatgg tacaatattc gccttcaatc
     3121 gcgttaaaac ggtagcctcc aattaaggtt aaaagtaatc gtccgtctgc tttaatttct
     3181 ttgaccattg cacccagcgt atccacatgg gcggttagca tacggtgttt cgtgtcgtct
     3241 ttcccaggaa gcgttacgat taatccacct ttgttgttta aatggtaagg gatttttgaa
     3301 gcatctaaat cttttgccag tttttcgatg attttccctg tattgccagt tgggcttggg
     3361 atagatgtta attctttaat tttttgcatt gtttcttttg tatttggttc gtatgacaaa
     3421 aaaattcctc ctttagttcg ctttcttcta ttatattata gcgcttatct tgaatatgcg
     3481 catttcttag gattaacttt tttcccaatt tagtcctttt atatgctata attcggtaga
     3541 cgaaaaggga gggaattttt tggaacaaac aaaagtaaaa gccgttacca tcgccgtatt
     3601 tgtcgcaaca tttatggcag ctattgaagg taccatcgtg agtactgcga tgccaacgat
     3661 tgtaagtcag ttggacggca tagagttaat gaactggatt ttttctgttt atttgctaac
     3721 atcagcagtg acggttccga tttacggaaa actgtctgat ttgtatggac gaaaaaatat
     3781 ttttgtgatt gcgacaatta tttttattat tggttcatca ctttgtggat ttgcacaaaa
     3841 tatggaacaa ttaattattt ttcgcgcgat ccaaggtatt ggagcaggtg ggattttacc
     3901 atctactatg acgattatcg cagacgtgta tccatttgaa aaacgagcaa aagtacttgg
     3961 cttcatgggt tccgcttggg gtatcgctgg cgtatttgga ccacttgttg gagggttttt
     4021 agtagatcaa ctttcatggc attggatttt ctttatcaat gtccctatcg gcattttaac
     4081 aatcctactt attttgcttt atttacgcga aaaagtggag catgtcaaac taccaattga
     4141 ctatttaggt gcctcgctct ttacggttgc tctgcttgga ttattatttg cgttacagcg
     4201 agccggggaa tcactcaact ggatagaacc gctcgtcgtt attctttttg ccgtttcgat
     4261 tgtgttattt attgcttttt attttgtcga aaaacgtgca aaagatccga ttatgccatt
     4321 tgtattattt aaaaacccag tggtgttaat tgggaactta attggtttct tgattagtgc
     4381 cttcctaatt ggaattaacg tgtatattcc aatgtgggca caaggaatgc ttgggcacgg
     4441 ggctacgatt gctggattta tgcttgcacc gctttcagtt acatggataa ttggttcatt
     4501 tatcggcggc aaacttttaa tgacgcttgg aaatcggcat acggttggca ttggcgtttt
     4561 aattactgct gcaagtggat taattttagc cttattcccc gcttccacaa atgatatctt
     4621 cttctattta aatagtgcat ttatgggatt tggttttggg ataatcttta caacaacaac
     4681 tgttaccgtt caagatgcag taccgcgatt ccaaactggt attgctacag cttctaacac
     4741 actgtttaga acagttggtc aaacaatcgg ggtcgctgtc tttggaacta tctttaactc
     4801 agttcttaca agcgaattcc gcgacgcagc tggcagtgaa gtaaatcgta gtaatctaaa
     4861 ccaactaatt agcccgcaaa cttctggtaa cgttagtgca gacctagttg atccgcttcg
     4921 agatatttta tatagcgggc ttcatatggt tttctgggtt atgtttgctt gctgtatcgt
     4981 tagttatttt attcatttta tcttaccgaa aaaacatatt tccggtga
//
LOCUS       DASDXX010000183         4954 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.183, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000183 DASDXX010000000
VERSION     DASDXX010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.183"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..533
                     /locus_tag="U0280_002444"
     CDS             <1..533
                     /locus_tag="U0280_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272368.1"
                     /translation="YIALILNDGSQNPKIYSIQGKGTFLNYFTLLDRSNNHFNFKTLS
                     GCSLYKYSKADMEYFLSMFPENFGFQFFIMKNQTTHIYFKSLMASSPASEKLKTTFSN
                     MALLHGVLSDDDTVILPQAIKTSHLLSYSNLSKSCFYKDLQHLKTTNQIEKKEKSWII
                     HDQELYAMIQNGQTSF"
     gene            complement(537..1343)
                     /locus_tag="U0280_002445"
     CDS             complement(537..1343)
                     /locus_tag="U0280_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM2272369.1"
                     /translation="MEMFLYGFMQRAFQASMIIAIIAPLLGVFLIIRRQSLMADTLSH
                     VSLAGVAFGLVLNVNPSVTTLIVVVIAALGIEYLRGVYATYSELSIAILMAGGLAVAL
                     VLMSLDQGGITTSVQQYLFGSIVTISKAQVQLLVILGIAIVVLFLVFKRFMFVLTFSE
                     DVAVAEGVPVRLISLLFSVVTGIAIAVIMPIAGALLVSALIILPAAIGMRISKGFLMC
                     VISAILIGLVGMFSGLVSSYQLGTPPGATITLMFIILFIISTVVLKMARK"
     gene            complement(1292..1996)
                     /locus_tag="U0280_002446"
     CDS             complement(1292..1996)
                     /locus_tag="U0280_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM2272370.1"
                     /translation="MKYIDIANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKST
                     LLRIILGILQPDKGSVTFAKKNADGGRLLTGYVPQQIASFNAGFPSTVLELVRSGRFP
                     NGKWFKRLTTKDHAHVEKALKSVEMWDYRHKRIGELSGGQKQRICLARMFATDPDILI
                     LDEPQTAMDKQSKIRFYDLLRHEAQVHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVS
                     WKCFSMDLCKEPSKHQ"
     gene            complement(2009..2950)
                     /locus_tag="U0280_002447"
     CDS             complement(2009..2950)
                     /locus_tag="U0280_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM2272371.1"
                     /translation="MKKWSFLVVTVLAFVLVLAGCGASNNKVSGDKDKLKVVTTFYPM
                     YDFTKNVAGDNASIEMLIDAGTEPHDYEPSAKDIAKIEAADVFVYNSEDMETWVPSVL
                     KSLDSKKLTVIYASKGIELVEGTEEEDHDHEHEEGHHHEHDPHVWLSPVLAEQEVTNI
                     QNGLTKADKTNADTYKKNAETYKEKLKTLDNKFKTAFEGAKQRDFVTQHAAFQYLAKE
                     YDLHQVAIAGLSPDQEPSPARLAELQKYVKENNISTIYFEEVASPKVAETLANETGAK
                     LEVLSPIEGITDKEQKKGMDYIAYMEQNLQALQKTIK"
     gene            3173..4828
                     /locus_tag="U0280_002448"
     CDS             3173..4828
                     /locus_tag="U0280_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2272372.1"
                     /translation="MHFLKKTLPIFAILTVLLLTACGNDNEKSTTKTSPDKIKFLETS
                     ELLTLNTTAEEDFASFTAQNQVFEGLYTLDQKDNFVPGVADGMPEISADQTKYTIKLK
                     KNAKWSDGSQVTADDFVYAWRRAVDPKTAPGYSALFKDSIKNATEINEGKLPVTDLGV
                     VATDPTTLEITLKKPVPYFISLLSFETFFPQKESFVKKQGDKYGTDSAHTLYNGPFVM
                     KDWGGNITNKWTYAKNDQYWDKDNVKVNEIDVQVAKDINAGVNLYNTNEADRVPLSGD
                     FAKQYKDKKDFQTEKDALISYLRMNQKRDGKATPLANNSLRHALNLAVDKKQLTDRIL
                     GDGSFPANGLLPKDFVQNPTTGADFRTDSGDHLVYNKEEALKYWKQAQKELGTDKVTI
                     ELLGDDQETTKTIFAYLKAQFEDNLPGVTIKVKNMPSKSATQLTSDGNYDLSLAAWMP
                     DFKDPWTYSSLFLSDYFNNHMSYNSPAYDKLVKSTDTTLATKPEERWNAFVASEKVLL
                     DDDAAILPLYQHQTAVLQRTDITGVQKHAFGSPYSYKFIRVEK"
BASE COUNT         1533 a         1038 c          882 g         1501 t
ORIGIN      
        1 gatatattgc tttgatttta aatgatggta gccaaaatcc caaaatctat tctattcaag
       61 gtaaaggaac atttttgaac tattttacat tactcgaccg aagtaataat catttcaatt
      121 ttaagactct ctctggatgt tcattatata agtattcgaa agcagatatg gagtattttc
      181 tttcaatgtt tcccgaaaat ttcggattcc aatttttcat aatgaaaaac cagactactc
      241 acatttactt taaaagctta atggcaagta gtccggcttc tgaaaaactt aaaacgacct
      301 tttcgaatat ggctttgtta cacggggttc tgagtgatga tgacacagta attcttcctc
      361 aagcaattaa aacaagtcat ctactttctt atagtaatct ttcgaaaagc tgtttttaca
      421 aagatttgca gcatctcaaa acaaccaatc agattgaaaa gaaagaaaaa agttggatta
      481 ttcatgacca agagctttat gcaatgatac aaaatggtca aacatcgttc taaaaatcat
      541 ttccgtgcca tttttaaaac aacggtcgaa ataatgaaaa gaatgataaa cattaaggta
      601 attgttgcgc caggtggggt tcctagttgg taggaagaca caaggccgga aaacattccg
      661 actaagccaa tcagaattgc actaataaca cacatcagga acccttttga aattcgcata
      721 ccgattgcag ctggtaatat aataagtgct gaaacgagta acgctccggc tattggcata
      781 ataacagcaa tcgcaatccc agtaaccaca ctgaataaaa gcgaaatcaa acgcacaggg
      841 actccttctg caactgcaac atcttcacta aaagtaagta caaacataaa ccttttaaac
      901 actaagaaca atactacgat agctattcct aaaattacca acagctgcac ttgcgcctta
      961 ctgattgtta caatcgaacc aaataagtat tgctgcacgc ttgttgtaat tccaccctga
     1021 tccaaactca tcaacactaa cgccacagca agtccaccag ccattagtat cgcaatggac
     1081 aactctgaat aagttgcata aaccccgcgc aaatactcaa tcccgagcgc cgcaataact
     1141 actacaataa gcgttgtcac actgggattc acatttaaaa ccaacccaaa ggccacacct
     1201 gcaagcgaca catgcgaaag cgtatccgcc ataagtgact gtcttcgaat aatcaagaaa
     1261 actcctaaaa gaggagcaat tatagcaatt atcattgatg cttggaaggc tctttgcata
     1321 aatccataga gaaacatttc catgacacat cctcctttct aataaggcga atatgcttat
     1381 cgacaaaatc ttccatttct tcactatcgt gcgttaccat taaaatcgct ttaccatgta
     1441 cttgtgcttc atgccttaat aaatcataaa aacggatttt actttgttta tccattgccg
     1501 tttgcggttc atccaaaatt aatatatctg ggtcggttgc aaacattcgg gccaggcaaa
     1561 tccgttgttt ttgaccacct gatagctcac cgatacgttt atgccgataa tcccacattt
     1621 ctacagattt caatgctttt tcaacatgcg catgatcttt tgtagtcagc cgtttgaacc
     1681 atttaccatt tggaaaacga cctgaccgta ctagttcgag aactgtactt ggaaaacccg
     1741 cattaaatga tgctatttgt tgtggtacat aacctgtcaa aagtcgcccg ccatctgcgt
     1801 tctttttggc gaaagtaacg gaacctttat cgggttgtaa aatgcccaaa ataatacgga
     1861 gcagtgttga tttagctgct ccgttttctc ctgttagtat aataaattct cccgcactca
     1921 cttgaaaaga aatgttttca agcactggtt cggattcgta tttaaaacca atattggcta
     1981 tatcgatgta tttcatttga tcgcttcctt attttattgt tttttgcaag gcttgtaagt
     2041 tttgttccat ataagcaata taatccatgc cttttttctg ttctttatcc gtaattcctt
     2101 cgatagggct tagtacttct agttttgctc ccgtttcgtt tgcaagtgtt tctgcaactt
     2161 ttggtgaagc tacttcttca aaataaatgg tgctgatatt attttctttc acgtattttt
     2221 gtaattccgc taatcgtgct gggcttggtt cttggtcagg tgaaaggccg gcgattgcca
     2281 cttgatgcaa gtcatactct tttgctaaat attggaaggc tgcatgttgg gttacgaaat
     2341 cgcgttgttt tgctccttca aaagctgttt taaatttgtt gtcgagtgtt tttaatttct
     2401 ctttatatgt ttctgcgttc tttttgtatg tatctgcatt tgttttatct gcttttgtaa
     2461 gaccgttctg gatattagtc acttcttgtt cggcaaggac tgggcttagc catacgtgag
     2521 gatcatgttc atggtggtgt ccttcttcgt gctcatgatc atggtcttct tcttcggttc
     2581 cttctactag ctcgattcct ttactcgcgt aaatcacggt taattttttc gaatctaagc
     2641 ttttaagtac gctcggcacc caagtttcca tgtcttcact gttataaacg aaaacatcag
     2701 ccgcttcgat tttggcaata tcctttgcgc ttggctcgta atcatgcggt tctgtccccg
     2761 catcaatcaa catttcaatg gaagcattat ctcccgcaac atttttcgta aaatcgtaca
     2821 ttggataaaa agttgtcact accttgagct tgtccttatc tccacttact ttattgttgc
     2881 tagcaccgca tccggccaaa actaaaacga acgccaacac tgttacaact aaaaatgacc
     2941 attttttcat attacctctc ctttttcgta atgattacga tttaaaactt aaagttacac
     3001 tatgtaaatt atgattgcgt atcgcaaaac gtaatcattc ttatttgcac aaaatatctt
     3061 atcacgggat tatttttgcg tcaagcagtt tttttgccaa atcattaact tgacttatct
     3121 tatcggaata cttataataa cgataaatac acagatagaa ggggagaaaa ccatgcattt
     3181 tttaaagaaa acattgccta tttttgccat tttgacagta cttttactta cagcttgcgg
     3241 aaatgacaat gaaaaatcta cgacaaaaac ttccccggac aaaattaaat ttcttgaaac
     3301 cagtgaatta ctgactttaa atacgacagc tgaggaagac tttgctagct tcaccgcgca
     3361 aaaccaagtc ttcgagggat tatacacact tgatcaaaaa gataactttg ttcctggggt
     3421 tgctgatgga atgccagaaa tcagcgctga ccaaacgaaa tacaccatta aattaaagaa
     3481 aaatgcgaaa tggtccgatg gttctcaagt aaccgctgat gatttcgtct acgcgtggcg
     3541 ccgtgccgtt gatccaaaaa ccgcacctgg atactccgcg ctcttcaaag attcgattaa
     3601 aaacgccact gaaatcaatg aaggcaaact acctgtaact gaccttggtg tcgttgctac
     3661 tgacccaaca acgcttgaaa tcacactaaa aaaaccagtt ccctacttca tttcacttct
     3721 ttcttttgaa acatttttcc cacaaaaaga aagctttgtg aaaaaacaag gcgacaaata
     3781 cgggacagat agtgcgcaca ctttgtacaa tggtcctttt gttatgaagg attggggcgg
     3841 caacattacg aataaatgga cttacgcgaa aaacgaccaa tattgggaca aagataatgt
     3901 caaagtaaat gaaattgatg tgcaagtcgc gaaagatatt aatgccggcg tgaaccttta
     3961 taatacaaac gaagctgacc gcgtgccact ttcaggcgat tttgcgaaac aatacaaaga
     4021 caagaaagat ttccaaacgg aaaaagatgc gctcatcagt tatttgcgca tgaatcaaaa
     4081 acgcgacggt aaagcgactc cacttgcgaa caattccttg cgtcacgcgc ttaatttagc
     4141 tgtcgataag aaacaattaa cggatcggat tctcggggac ggctcattcc cggcgaatgg
     4201 actgcttcca aaagatttcg tccaaaaccc aacaacgggc gctgatttcc gtacagatag
     4261 cggcgaccat ttagtttata acaaagaaga agctttaaaa tattggaaac aagcacaaaa
     4321 agaacttggc actgacaaag taacaatcga acttctcggc gatgaccaag aaacaacgaa
     4381 aaccattttc gcttatttga aagcgcagtt tgaagataat ttgcctggtg tgacgattaa
     4441 agtgaaaaat atgccttcga agagcgcgac acagctaact tctgatggta attatgactt
     4501 gtcactggct gcttggatgc ctgattttaa agatccgtgg acgtatagca gcttattctt
     4561 atccgattac tttaataacc atatgagtta caacagcccc gcttatgata aacttgtaaa
     4621 atcaactgat acaacacttg cgacgaagcc tgaagaacgt tggaatgcgt tcgtagcttc
     4681 tgagaaagtt ctgcttgatg atgacgcggc gatcttacca ctttatcaac atcaaacagc
     4741 agtgttgcaa cgtacggata ttaccggcgt gcagaaacat gcttttggtt cgccttatag
     4801 ttataagttt attcgggtgg agaagtaatt cgccagtttg gaaaaagcca gcaattttaa
     4861 aaattgctgg ctttttgatt tataaattct atctttgcaa gtaagcgtgt atcttattta
     4921 ctaacgacac caatcagata aatgaactta attt
//
LOCUS       DASDXX010000184         4953 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.184, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000184 DASDXX010000000
VERSION     DASDXX010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4953
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.184"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..230)
                     /locus_tag="U0280_002449"
     CDS             complement(<1..230)
                     /locus_tag="U0280_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 family protein"
                     /protein_id="HEM2272373.1"
                     /translation="MEFEDEKLLREVLLFAGSVDTKINDMSLEVIDFGNLRDYTKNEV
                     LLTLYWLEENGFLTRNNNIAEKRYTLTLKGELL"
     gene            complement(529..2334)
                     /gene="pepF"
                     /locus_tag="U0280_002450"
     CDS             complement(529..2334)
                     /gene="pepF"
                     /locus_tag="U0280_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM2272374.1"
                     /translation="MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEE
                     SEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYAHLKMDQDTANAKYQGLHSRAGS
                     LVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
                     LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRRE
                     AFLGVYSVYEGLKNTLASTLNGQVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLL
                     KSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFTYEEAKELVLEALKP
                     LGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAH
                     ELGHSVHSYYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNH
                     YLDGFKGTVFRQTQFAEFEHAIHQADQEGVALTADYLTETYFDINKKYYGEAMVYDAE
                     IGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAGSSDYPI
                     DVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK"
     gene            complement(2407..3522)
                     /locus_tag="U0280_002451"
     CDS             complement(2407..3522)
                     /locus_tag="U0280_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HEM2272375.1"
                     /translation="MIIIFTARNNMGETFTITKMNVERIKQEERLFCKSCASPVMIKA
                     GQIKIPHFAHEKTMKCAFASEGESEEHLAAKKQIMAWYCYQSIPVEVESYFPEIKRQA
                     DIFVNGKAVIEFQRSSISISEMIQRTMDYLSIGLEVHWILGQVVRKEKGRICLSAFQQ
                     AFIQSDKKLGYHFWHYSTEREICTLYYHLTFEKGNRFFASEMKFSMKAPFSEWKKKLA
                     RIITRHAYVKRDRELERQKICFYYAKFKKHGQFMQKLFNAGYYLHYLPKEIGVDLEEQ
                     FLVITPAVEWQFDLWEKFFKGLEKGDTFSECCFFESFQSVVTQILTIWLSPNESLKLG
                     KSYLSYLIGEGVLSTIPDNRYRVKRKMVFTNTRAAHI"
     gene            complement(3648..4301)
                     /gene="mecA"
                     /locus_tag="U0280_002452"
     CDS             complement(3648..4301)
                     /gene="mecA"
                     /locus_tag="U0280_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HEM2272376.1"
                     /translation="MEIERINEDTIKFYISYLDLEERGFNQEDVWYDREKSEELFWDM
                     MDELKYEEEFSPEGPLWIQVQALKHGLEVFVTKATIGGKGEDGFDVTLSSPDELAEEK
                     IEKLLEENFNPVKKEALGDDDTLEFILEFRDFEDAISLSRATGLENLVTKLYSYQGKY
                     YLNVEFPENKYDESNIDNAVSILLEYGLESNLTGYMLAEYGKVIFDVPALKQIRKHF"
     gene            complement(4534..4929)
                     /gene="spxA"
                     /locus_tag="U0280_002453"
     CDS             complement(4534..4929)
                     /gene="spxA"
                     /locus_tag="U0280_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HEM2272377.1"
                     /translation="MVTLYTSPSCTSCRKARAWLEEHDIPYKERNIFSEPLSLDEIKE
                     ILRMTEDGTDEIISTRSKTFQKLNVDLDSLPLQQLFELIQKNPGLLRRPIIIDEKRLQ
                     VGYNEDEIRRFLPRRVRTYQLREAQKMVN"
BASE COUNT         1548 a         1030 c          712 g         1663 t
ORIGIN      
        1 agtaattccc cttttaaagt taacgtatat cttttttctg caatattatt atttcttgtt
       61 aaaaagccat tctcttccaa ccaataaagc gttagtagta cttcattttt tgtatagtcc
      121 cgcagatttc caaaatcaat cacttcaagt gacatatcat taatcttcgt atctacactt
      181 cccgcaaaaa gaagtacttc tcgtagtaat ttttcatctt caaattccat ctttaatcct
      241 cctttaattc tgagttagta tcgtaataac gtaaaaagcc gtagcaaaat gccacggctt
      301 cttacagcgc aatcaaaagg agaaattcac acaatcaaat aaagggggta tttgtttgtg
      361 atttatttca cggttataat ataccatata aacgcttata attcaatagt tcacatacct
      421 atttttattt gtctatccta tgaatattgg catcactcaa acatacgaaa aaaaagactc
      481 gcagccatta tcgctacgat gtcttttttt agcaaatttc acaatatatt atttaactaa
      541 tttttctagt tcatctaatc tttgttcaaa tacttttagt gcatcatcca ccggattagg
      601 agttgccata tcaactcctg cttttttcaa cacatcgata ggataatccg aacttcccgc
      661 tttcaagaaa tcaatatagg cagtcaccgc ttcttggcct tctgttaaaa tcttcgcact
      721 caatgcagat gctgcagaaa aaccagttgc atattggaac acataataat tcatataaaa
      781 atgcggaata cgagaccatt cataaccgat ttcagcatca taaaccatcg cttctccgta
      841 atatttcttg ttaatatcaa aatatgtttc ggtcaagtaa tccgcagtca gcgccactcc
      901 ttcttgatcc gcttgatgaa tagcatgttc aaattcagca aattgggttt gacggaatac
      961 agtacccttg aatccatcca aatagtgatt caacaagtaa gcacgaactt ttggatcatc
     1021 atatttctta agaagataat cagttagtaa attttcattt gttgtcgaag caacctccgc
     1081 taagaaaatc gaataatcac cataaacaaa tggttggttt tttcttgtat aataactatg
     1141 cacactatgc cctaattcat gcgcaagtgt gtaaacatta ttaatattat cctgccaatt
     1201 gagtaaaata taaggactcg tactatacga accagaagaa taggctccac tacgttttcc
     1261 tttattttcc atcacatcaa tccaacgact atcaaatgct tcttttaaaa ttgcttgata
     1321 ttcatcacca agcggtttaa gcgcttcaag cacaagttct ttcgcttctt cataagtaaa
     1381 ctccaaatta acatcatcag aaagtggcgt ataaagatca tacatatgca attcctctaa
     1441 gccaagtaat tctttacgta acttcacata acgatgaagc aaatctgcat tcgcatttac
     1501 tgattttaac aaggaatcat atactgtttc aggaatatgg ttcccagaaa gagccgcttc
     1561 acgagctgac gtgtagccac gagtggaagc ataaaaatta gacttcttca cttgtccatt
     1621 caaagtagag gctaaggtgt tttttaggcc ttcataaaca gaatacacac caagaaacgc
     1681 ttcacgacga actcgcggat cattactttc caacaatttc ccgaaacgac catgagtaat
     1741 ttcgatatct tccccgttct catctttaat ggttggaaac ttcatatctg cattattcaa
     1801 ggtattaaaa gtattagacg aactgccaag cacttcacct gcgttagcta gtaaagcctc
     1861 ctctttctca cttaaaatat acggtcggct tagatttaac tcttctagta aatgcgcata
     1921 taattgtaaa tctttgttct catttaaaaa ttgttttaaa acgctttcgt ccatagctaa
     1981 aatttcagga tcataataag acagtgcaga cattagcttt gtaactaggc ttcctgcgcg
     2041 actatgtaaa ccttgatatt tcgcattagc tgtatcttgg tccattttca aatgcgcata
     2101 tacatataag ttactaatta aatcatatgc attatctcga aattgaagtg cttcatatag
     2161 tgtctggctg ctttccgata aacgcccttt aaattgctcg ctttcttctg tgattttttg
     2221 caaatctgta aatgcttgtt cccaagcttc atcgtttgga taaatcgtag ttaaatccca
     2281 agttagattt tctggtactt cttctcttaa aggtaatgca tttgttttac tcaatattaa
     2341 aacccccaac catagtcatt ttgtttttat tatgagccaa aataactaaa aaagcaaaac
     2401 agatgattat atatgtgctg ctcgagtgtt agtaaaaacc attttccgtt tcacacgata
     2461 tcgattatct ggtatggtag ataacacccc ttcaccaatc aaataagaaa gatatgattt
     2521 tcctaacttc aaactttcat ttggagaaag ccagatagtt aaaatttggg ttacaactga
     2581 ttgaaaactc tcaaaaaagc agcattcgct aaaagtatct cctttctcca gacctttaaa
     2641 aaacttttcc cacaaatcaa attgccattc aacagcaggt gtgataacta aaaattgttc
     2701 ttctaaatcc acacctatct ctttcggtaa ataatgcaaa taataaccgg cattaaataa
     2761 tttttgcata aattgtccat gttttttaaa tttagcataa taaaaacaaa ttttttgtct
     2821 ttcgagttct ctatctcgtt ttacataggc atggcgtgta ataattctag ctaacttctt
     2881 cttccattca ctaaaaggtg ccttcataga aaatttcatt tcacttgcga aaaaacgatt
     2941 tcctttttca aatgttagat gataataaag tgtacaaatc tctcgctcag tagaatagtg
     3001 ccaaaaatga taacccaatt tcttgtcaga ctgaataaaa gcttgttgga atgcagaaag
     3061 acaaatacgc cccttctcct tcctaaccac ttgcccgagt atccagtgaa cttctaatcc
     3121 aattgataag tagtccattg ttcgttgaat catttcacta attgaaatag aagaacgttg
     3181 aaattcaatt actgccttcc cattcacaaa aatatctgct tgtcgtttta tttctggaaa
     3241 ataactttcc acttccacag gaatactttg atagcaatac caggccatga tttgtttttt
     3301 agctgctaaa tgttcctcgc tctccccttc agaagcaaat gcacacttca ttgtcttctc
     3361 gtgggcaaag tgcggtattt ttatctgtcc tgcttttatc attactgggc ttgcacaaga
     3421 cttacaaaac agtctttctt cttgcttgat tcgttccaca ttcatcttag taatagtaaa
     3481 agtttctccc atgttatttc tggctgtaaa aataattatc actctcctat tagctcttta
     3541 atattattat tcgccaagga gcatccaaat tcctttctta tttttaaaat cacaaaaaag
     3601 ccccgtttgg ctatttttca gcacaaacgg ggctttaaaa tactatttta gaaatgtttt
     3661 ctaatttgct ttaatgcagg aacgtcaaag attacttttc cgtactcagc tagcatataa
     3721 ccagttaaat tcgactctaa accgtactca agcaaaatac taacggcatt gtcaatgtta
     3781 gattcatcat atttattctc aggaaattct acattcaaat aatactttcc ttgatacgag
     3841 tatagcttag ttactaaatt ttctagtcca gtcgctcgtg aaagagaaat agcatcttca
     3901 aaatcacgga actctaaaat aaactctagt gtatcatcgt ctccaagtgc ttctttcttc
     3961 actggattaa agttttcttc gagtagtttt tcgatttttt cttctgcaag ctcatctggc
     4021 gagctaagcg tgacatcgaa gccatcttcg ccttttccac caattgtagc ttttgttacg
     4081 aatacttcta agccatgttt taaggcttgg acttgtatcc agagcggacc ttccggagag
     4141 aactcttctt catatttcag ctcatccatc atatcccaga aaagctcttc acttttctcg
     4201 cgatcatacc aaacatcttc ttggttaaaa cctcgctctt ccaaatccag ataagagata
     4261 taaaacttga ttgtatcctc attaattcgt tcaatttcca tcgtcacact ctcccttcct
     4321 tcttagtcat tgacaatgaa gggtaaaact taattggtta aattcattgt agctcatatt
     4381 aagaaatagt accaccattt ttccttcgat ttgcttggtg gaatcttatc ttagctgaaa
     4441 agcgaaaaaa attcaagaac atttacttaa actacaaaaa aaagcgccaa gaatccaatt
     4501 gaatggaatc cttggcaacc acttttatca atcttagtta accatttttt gcgcttcacg
     4561 tagttgatac gtacgtacac ggcgcggtaa gaaacggcga atttcatctt cattgtaccc
     4621 aacttgcaaa cgtttttcat caataatgat aggacgtctt aataagccag gatttttctg
     4681 gattaattca aatagttgtt gcaaaggaag actatctaaa tccacgttca gtttttggaa
     4741 cgtttttgaa cgagtggaaa taatttcatc tgtaccatcc tcagtcatac gaagaatttc
     4801 tttaatttca tccaaactaa gtggctcaga aaaaatgttt ctttccttat aagggatatc
     4861 atgttcttcc aaccatgcac gagcttttcg gcaagatgtg caactaggtg aagtgtataa
     4921 cgttaccatt agacattcac actccttatc ggg
//
LOCUS       DASDXX010000185         4927 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.185, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000185 DASDXX010000000
VERSION     DASDXX010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4927
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.185"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            98..1624
                     /locus_tag="U0280_002454"
     CDS             98..1624
                     /locus_tag="U0280_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEM2272378.1"
                     /translation="MTIKKYEPLNLYTNFKKSAERYPEMPIHFDEELVTFPELGLHTT
                     YKKCEEAIIQKAAHLHKFGVRKEEKVIVYKSAKFDSYILAVAISYIGAVPIMVSPHLP
                     ASTIDIFVNRLDQPWLLFDSETSEKSHQLNNLPDSRLINAEQLFKAPLDGYTCEQEEL
                     PKDMIAYMTHTSGTTGVPKLIAHSANSMGWRTKYQRRILNFIKPRGLVAFHISPVHSR
                     FNIGVSSLMSLGFPLLPIANPTKANVEKVLREYKPYVLETHPNHFVQWASLAREKPDV
                     FQSIKFYHSTFDAINKETMAVFLRTSEYKKPIFLQIYGQSECGPMILRGHTLQSIETL
                     NARDMGIGVPGLTEVRIVDQDGNPVPAGVSGNIQMLSKGRALTYYKEEARFEENVYGP
                     WWDSGDYGMKDEQGRLFLQDRQVDLVETIDSTLAIEDKLLDTLTFLDEVVIIRGENGS
                     PQPIIAVHNDGEMNWDAWWKAVSDLPHMNEPMVMKYDEIPRTATMKVQRLQMERELKK
                     "
     gene            complement(1665..3434)
                     /locus_tag="U0280_002455"
     CDS             complement(1665..3434)
                     /locus_tag="U0280_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2272379.1"
                     /translation="MKSKGRLFLYVVLALSIVIGTNVFIKIDAHAAAAPPAAISQIFP
                     DDALATEIQTTLGKSSTAEVVTQTDLDTINSLTLTSKGISSLEGMNYLTNLGTLILTG
                     NQVSDISPLKGLTNLTMLQLSGNPISDISALSNLKNLQALDINDAQVTDITPLSGLTN
                     LKGLGLYNNQLENLSGVNSLHQLRSLNVSNNKLTNLDELQALSNLSVLYANENQINNL
                     QGLSNLNNLFLLDLSANQIVDTTPLAGLTKVQTLYVSNNQISDVTGISSLINLDWLDI
                     SQNKISNIRPLNSLTKLTIIQMTNQLIVNEPISFESTVTIPNLIKNIAEQTIDPDTIS
                     DNGVYANEAVTWNLPTYIPKVSYTFIERDTIGNATGNFSGTVEQPLVQYFKATFNIDG
                     QETTENVETGTLLQEPPTPVKEGYTFNGWYDAETGGTKWDFTADTMPANDITLYAQFS
                     INSYTATFDVDGVISTQAVEYQGLLEEPPAPTKDGYTFKGWYDAKTGGTKWDFTNNQM
                     PANDITLYAQFSKDASSGGDGGGTDEGGGNSENSTEGAPNTSDIDTINHIVLPATGDD
                     HVLFPIFIGTFLTSLALLTLRRK"
     gene            complement(3532..3942)
                     /locus_tag="U0280_002456"
     CDS             complement(3532..3942)
                     /locus_tag="U0280_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272380.1"
                     /translation="MDYIITTDLPNAEEFVKLRVDAGLSFRSIEVSRQALLKSVYFVG
                     LRSKEDNALIGMGRLVGDGIMFIVSDIAVLPEFQGNGYGKLIMTHIKNYIDSNLDKTA
                     CVTLLADVPADGLYKQFGFRESAPASIGMIYQMK"
     gene            complement(4008..4772)
                     /locus_tag="U0280_002457"
     CDS             complement(4008..4772)
                     /locus_tag="U0280_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2272381.1"
                     /translation="MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLE
                     ESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKEAIAKEAATLVKNNQTIILDASS
                     TALALAKELHGFSRLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
                     IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTA
                     SITAAENIDLLITDNKINKALYKKFQDAGLPVKIAE"
BASE COUNT         1473 a          965 c          872 g         1617 t
ORIGIN      
        1 tttttttaca atgatgtaaa tgttttctat tactactcct cattatttcc acaaagtgat
       61 ataatagcaa catcaaatat taaaggagca tcgccatatg acgataaaaa agtacgaacc
      121 acttaacctc tataccaatt tcaaaaaatc tgctgaacgc tatccagaaa tgcccatcca
      181 ttttgatgaa gagcttgtta cttttcctga attaggcctt cacactactt acaaaaaatg
      241 tgaagaggct attatccaaa aagcagctca tctacataaa ttcggtgtac gcaaagaaga
      301 aaaagtaatc gtatataaat ctgccaaatt cgattcttat attttagcag ttgcgatttc
      361 ttatattggt gccgtgccaa tcatggtttc cccgcatctt ccagcgtcta ctattgatat
      421 ttttgttaat cgccttgacc aaccttggtt actttttgat tctgagactt ctgagaaaag
      481 tcatcagtta aacaatttac cagacagtag attgatcaat gctgaacaat tgtttaaagc
      541 gccactagat ggctacacat gcgaacaaga agaattacca aaagatatga ttgcttatat
      601 gactcacact tctggaacaa ctggtgtgcc aaaattaatc gctcactctg cgaattcgat
      661 gggttggaga acgaaatacc aacgacgtat tcttaatttc atcaaaccaa gagggcttgt
      721 agctttccat atctcaccag tacattctcg ttttaatatt ggtgtttcat ccttgatgtc
      781 gctcggtttc ccgcttctgc caattgccaa tccgactaaa gcaaatgtcg aaaaagtgct
      841 acgcgaatac aaaccgtatg tgctcgaaac gcatccaaat cattttgttc aatgggcatc
      901 gcttgctcgt gaaaaaccag acgttttcca aagtatcaaa ttttatcatt ctacttttga
      961 tgcgattaat aaagaaacaa tggcggtttt ccttcgtact tccgaatata aaaaaccaat
     1021 tttcttacaa atttatggac aaagtgaatg tggtccgatg attttacgtg gtcatacgct
     1081 tcaatccatt gaaacgctaa atgcgcgcga tatgggaatt ggtgttcctg gtttaacaga
     1141 agttcggatt gttgaccaag atggtaatcc tgttccagct ggggttagtg gtaatattca
     1201 aatgctttcc aaaggtcgcg cgcttactta ttacaaagaa gaagctcgtt ttgaagagaa
     1261 tgtgtacgga ccttggtggg atagcggcga ttatggtatg aaagatgaac aaggccggtt
     1321 attcttgcaa gatcgtcaag tcgatttagt agaaacaatt gatagtacac tcgcaattga
     1381 agataaactg cttgatacgc tgactttctt agatgaagtt gttatcatcc gtggtgaaaa
     1441 cggtagcccg caaccaatta tcgcagttca taacgacggc gaaatgaact gggacgcatg
     1501 gtggaaagct gtttctgact tgccacatat gaacgaacca atggtgatga aatatgatga
     1561 aatccctcgt actgcaacaa tgaaagtaca acgtttgcag atggaacgag aattgaaaaa
     1621 ataagtttca aaaaagcagc tgcgttatgc agctgctttt tcctttattt tcttctaagt
     1681 gtaagtaatg ctaaactcgt aagaaatgtt ccaataaaga ttggaaaaag cacatggtca
     1741 tctcctgttg ctggtagtac gatgtggttt atagtatcta tatcactcgt attaggagct
     1801 ccctctgtac tattttcaga gttacctcca ccttcatcgg ttcctccacc gtccccacca
     1861 gaagatgcat ctttactaaa ctgggcatac aaggttatat catttgctgg catttgattg
     1921 tttgtgaagt cccattttgt tccaccagtt ttggcatcat accaaccttt aaatgtataa
     1981 ccatccttag ttggcgctgg tggctcttcc agtaaacctt gatactctac cgcttgagta
     2041 gaaatgacgc catctacatc aaaagttgcg gtataactat taatactaaa ctgggcatac
     2101 aacgttatat catttgctgg catcgtatcg gctgtaaagt cccattttgt tccacctgtt
     2161 tcagcatcat accatccgtt aaatgtataa ccctctttga ctggggttgg tggttcttgt
     2221 aaaagtgtcc ctgtttcgac attttccgtt gtttcttgcc cgtcaatatt gaaagttgct
     2281 ttaaaatatt gtactaatgg ttgttctaca gtcccactga aatttccagt tgcattacca
     2341 atcgtatcac gttcaataaa ggtatagctg actttaggaa tataagtagg taaattccat
     2401 gtaacagctt cattcgcata cacaccgtta tcgctaattg tatcgggatc aatcgtttgt
     2461 tccgcaatgt tttttattaa attaggaatc gttacagtgc tttcgaaact tatcggttcg
     2521 tttacgatta attgattagt catttgaata attgttagct tcgttaaact gtttaaaggt
     2581 ctaatgttac taattttatt ttggcttata tcgagccaat ctagatttat taaactcgaa
     2641 ataccagtta catcactaat ttgattgttt gatacgtata atgtttgtac cttagttaag
     2701 ccagcgagtg gagtagtatc cacaatttgg ttcgctgata aatcaagcaa gaaaaggtta
     2761 tttaaattac ttagcccctg aagattgtta atttggtttt catttgcata tagaacgctt
     2821 aaattgctta gcgcttgtag ctcatctagg ttcgtaagct tattattact aacatttaag
     2881 gagcggagtt gatgtaaact atttactcca ctaaggttct ccaattgatt attatataag
     2941 cctaaaccct ttagatttgt taaaccgctc agtggcgtga tgtcagtaac ttgcgcgtcg
     3001 ttaatatcta gagcttgtaa gtttttcaag ttactaagtg cgctaatgtc gctaatcgga
     3061 tttccactca gctgaagcat ggtcaagtta gttaagcctt taagtggcga aatatcgctt
     3121 acttgattac cagttaaaat taaagttcct aaattggtca agtagttcat accttctagg
     3181 gagctgatac ctttagaagt aagggttaat gaattaatag tatctaaatc tgtttgagtg
     3241 acaacctctg ctgtactaga ctttccgagt gtagtttgaa tttctgtcgc taaagcatca
     3301 tcgggaaaaa tctggctgat tgcagctggt ggtgcagcgg ctgcatgtgc gtctattttt
     3361 ataaatacat tcgtcccaat aacaatcgac aacgccaaaa caacgtacaa aaacagtctc
     3421 cctttggatt tcatcttgct ccccctgaca aaaagtttaa tagtatcttg ttcccatttt
     3481 cttatcacca gaaacataaa aaaacagctt gagggcgtcc ccgagctgtt ttcatttcat
     3541 ttggtaaatc attccgattg aagctggtgc ggactctcga aaaccaaatt gtttgtataa
     3601 accatctgct ggtacatcgg caagtaatgt aacacaagca gttttatcta aattcgaatc
     3661 tatatagttt ttaatatggg tcataattag ttttccataa ccattacctt gaaattccgg
     3721 aagcactgct atatcagaaa cgatgaacat aattccatca ccaacgagcc gccccatgcc
     3781 aataagtgca ttgtcctcct tcgaacgtag ccccacaaaa tacacactct tcaacagagc
     3841 ctgacgtgaa acttcaatag atcggaaact aagaccagca tctactcgaa gtttaacaaa
     3901 ttcctccgca tttggtaaat cagttgtaat aatataatcc attttcaatc tcctatcaaa
     3961 aaaatctctt tgaaccaatt gtcgcccaaa gagtttcaat ttctatttta ttccgcaatt
     4021 ttgacaggaa gtcctgcatc ttggaatttt ttatataatg ctttatttat tttgttatct
     4081 gtaattagta aatcgatgtt ttctgctgct gtaatgcttg cggtggagat tacgcccatt
     4141 tttgtatgat ctaaaagtgc gatcaatttg ttagtacgtt tagcaagaag tcgttttagt
     4201 tcagtttcat aaatgttgaa atcagttaag ccttcttcca ttgtaaaacc ttttgctgac
     4261 ataaaacata aatcggcatg gatgttttca attaaattcg cgccaagaat cccttccagt
     4321 gtaaaagagt tcgtcgtcac aatcccgcca gttaaaataa cgctgatatt cgggttgtct
     4381 tttagttcga ttgctgtata aagtccgctt gttatgacag tcagccttga aaaaccatgt
     4441 aactcttttg caagcgccag tgcagtcgag ctggcatcta ggataattgt ttgattgttt
     4501 tttactaaag ttgccgcttc tttcgcaatc gcttcttttt cttcgatgtt gcgaataatc
     4561 cggtcattaa aattagtaaa tttctcttcg ctctttaaaa gtaccgcacc cccgtgtact
     4621 tttttaatca tcccgctttc ttctaatgaa gataaatcat ttcggatggt actaatcgag
     4681 acatccaaga tacgacttaa ttctggtaca gttattttgc tattttggtc tagtagatga
     4741 attattttgt tttgtctttc aaatggaaac atccgctcgc cctcctttta cctatcaatg
     4801 atttctttat gtatatacat attacccaaa aaaataacaa aacacaaata tattttataa
     4861 aacacaacaa aagatagcac tttacaataa aaaacaagta tgttaggata taaatagcaa
     4921 ttaaaca
//
LOCUS       DASDXX010000186         4875 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.186, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000186 DASDXX010000000
VERSION     DASDXX010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4875
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.186"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1064
                     /locus_tag="U0280_002458"
     CDS             <1..1064
                     /locus_tag="U0280_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464953.1"
                     /note="Members of the family are the ATP-binding subunit
                     of ABC transporters for substrates such as betaine,
                     L-proline or other amino acids, choline, carnitine, etc.
                     The substrate specificity is best determined from the
                     substrate-binding subunit, rather than this subunit, as it
                     interacts with the permease subunit and not with substrate
                     directly; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="betaine/proline/choline family ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2272382.1"
                     /translation="MKMINRLIEPTEGKIFINDKDIMAEDPVKLRRSIGYVIQQIGLM
                     PHMTIRENIVLVPKLLKWSEEKKQERAKELIKLVDLPEEFLDRYPYELSGGQQQRIGV
                     LRALAAEQNLILMDEPFGALDPITRDSLQEEFKNLQKELGKTIIFVTHDMDEAIKLAD
                     RIVIMKAGEIVQFDTPDEILRNPANSFVEDFIGKDRLIEAKPDVTQVAQIMNTNPVSI
                     TADKSLQAAITVMKEKRVDTLLVVDEGNVLKGFIDVEQIDLNRRTATSVMDIIEKNVF
                     YVYEDTLLRDTVQRILKRGYKYIPVVDKDKRLVGIVTRASLVDIVYDSIWGTVEDATE
                     NQEEQADSKTTEPEMKQEG"
     gene            1068..1724
                     /locus_tag="U0280_002459"
     CDS             1068..1724
                     /locus_tag="U0280_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272383.1"
                     /translation="MDAIVTFFQENGHNLLVQTWQHLFISLSAVILGIAVAVPTGILL
                     TRSPKVANFVIGVVSVLQTVPSLAILAFIIPFLGVGTLPAIIALFIYALLPILRNTFI
                     GVRGVDKNLIESGRGMGMTNWQLIINVEIPNSISVIMAGIRLSAVYVIAWATLASYIG
                     AGGLGDFIFNGLNLYRPDLILGGAIPVTILALVVEFALGKLEYRLTPKAIREAREGGE
                     "
     gene            1726..2652
                     /locus_tag="U0280_002460"
     CDS             1726..2652
                     /locus_tag="U0280_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2272384.1"
                     /translation="MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATT
                     ESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVGPL
                     GEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR
                     KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALG
                     YSTDGRIPTYNLKLLKDDKKFFPPYDASALATDEILKKHPELKTTINKLKGKISTEEM
                     QKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN"
     gene            2667..3338
                     /locus_tag="U0280_002461"
     CDS             2667..3338
                     /locus_tag="U0280_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272385.1"
                     /translation="MDTLKQLIDYYQTNGSYVMEEFWRHFLMSAYGVIFAAIIAIPLG
                     VYIARKKRLAGWVIQIANIIQTIPALAMLAVLMLIMGLGTNTVVLSLFLYSLLPILKN
                     TYTGIRNVDGALLESGKAMGMTKWQVLRLIEMPLALSVIMAGIRNALVIAIGVAAIGT
                     FVGAGGLGDIIVRGTNATNGTAIILAGAIPTAVMAILADVLLGWVERTLNPVKNKRKS
                     LTEAL"
     gene            3451..4797
                     /locus_tag="U0280_002462"
     CDS             3451..4797
                     /locus_tag="U0280_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEM2272386.1"
                     /translation="MKKDKTERTKQSWRKAQNAPSLSEVNNSVAIPKNAKFFRKLFAF
                     MGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGR
                     DLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLLFGIPLIWGVCITAL
                     DIFLVLFLQHKGFRYIEVIVITLMVTILVCFGAEMVMSHPDMQAIAKGFIPQSEIVTN
                     PAMLYIALGILGATVMPHNLYLHSSIVQTRQYARTKEGKKEAIRFSFIDSTFSLTIAL
                     LINASILILAAAAFYTTGQHNVAGIEDAYKLLNPTLGSSIASTVFAVALLASGQNSTL
                     TGTLAGQIVMEGFLNIRLKPVVRRLLTRVLAIVPAVIITALYGANGINELLIFSQVIL
                     SMQLSFAVIPLVMFTSDKQKMGEFVNPTWLKIISWAVAIFIAVLNIYLLFYTLTSL"
BASE COUNT         1553 a          877 c          955 g         1490 t
ORIGIN      
        1 caatgaagat gattaaccgg cttattgaac ctacagaagg aaaaatattt attaatgata
       61 aagacatcat ggcggaagat cccgtcaaac taagacgttc tattggttat gttattcagc
      121 aaattggctt gatgccacat atgacgattc gtgaaaatat cgtccttgta ccaaaattac
      181 ttaaatggtc cgaagagaaa aaacaagaac gggcaaaaga attaattaaa ttagtagatt
      241 taccagaaga gtttttggac cgttaccctt acgaattaag tggtggacag cagcaacgta
      301 tcggtgtttt aagagcgctt gcagcagagc aaaacttaat tctgatggat gaaccttttg
      361 gagcactaga tccaattact cgtgattccc tacaagaaga attcaaaaat ttgcaaaaag
      421 aacttggcaa gacgattatt tttgttaccc atgatatgga tgaagcgatt aaactggcgg
      481 accgtatcgt cattatgaaa gctggtgaaa ttgttcaatt tgatactcca gatgaaattt
      541 tgcgtaaccc tgcgaattcg tttgtagaag atttcatcgg taaagatcgc ttaattgaag
      601 cgaaaccaga tgttacacaa gtagcacaaa tcatgaacac aaatccagtc tctattacag
      661 cggacaaatc actccaagct gcgattactg tcatgaaaga gaaacgagta gatacattac
      721 ttgttgtcga tgaaggtaac gtgttgaaag gatttatcga tgtagagcaa attgatttaa
      781 atcgtcgtac ggcaacttct gtcatggata tcatcgagaa aaatgtcttt tatgtgtatg
      841 aagatacctt gcttcgcgat actgtacaac ggattctaaa acgcggctat aaatacattc
      901 ctgtagtgga taaagataaa cgacttgtcg gaattgttac tcgtgccagc ttagtggata
      961 tcgtgtatga ctccatttgg ggtacggtag aagatgcgac agaaaatcag gaggaacagg
     1021 cggattccaa aacgacagaa ccagaaatga agcaggaggg ataagctatg gacgcaattg
     1081 ttacattttt ccaagaaaac ggccataact tgcttgttca aacatggcaa catttattta
     1141 tctccctatc tgctgttatt ttaggtattg cggttgcagt accaactggg attttactta
     1201 cacgctcacc aaaagtagca aattttgtaa ttggtgttgt tagtgttttg caaaccgttc
     1261 cttctcttgc cattttggcg tttattattc cgtttcttgg tgttggtact ttaccagcga
     1321 ttattgcgtt atttatttac gcacttttac caattttacg aaacacgttt attggtgttc
     1381 gaggagtcga caaaaattta atcgaatctg gtcgaggcat ggggatgacg aattggcaac
     1441 taattattaa tgtcgaaatt cctaactcca tctccgttat tatggctggt attcgtttat
     1501 ctgcagtata tgttatcgct tgggcaacac ttgcttctta cattggagca ggtggactag
     1561 gagactttat ttttaatggt ttaaacttat accgcccaga tttaattctt ggtggggcaa
     1621 ttcctgttac cattttagcc cttgtagtag aattcgcgct tggaaaatta gaatatcgtc
     1681 taactccaaa agccatccgt gaagctcggg aagggggaga ataacatgaa gaaaaaattt
     1741 atcgcgttat tcagcgtatt actactaact agttctcttt tcttatctag ctgttcttta
     1801 ccaggacttg gaggcagttc caaagatact attcgcatcg gtgcaatggc aacaactgaa
     1861 tctcaaatcg tttcgaatat tttaaaagaa ttaattgaac atgatactgg cctaaaagta
     1921 gaaatcgtca acaaccttgg atcaactatc gttcagcacc aagcgatgtt aaatggggat
     1981 gtagatatta ctgcaacaag atataccggt acagatttag ttggtccact tggtgaagaa
     2041 gcaattaaag atccagaaaa agctttagca gctgttaaga aaggttttga agaacgtttc
     2101 caccaaacct ggtttgattc ttacggcttt gctaatacgt atgtgtttat ggtacgccaa
     2161 gacactgcga aaaaatacaa tttaaacacc gtaagtgata tgcgaaaagt agaaaatgag
     2221 ctcacagctg gtgtcgataa ttcttggatg gaacgtgaag gcgatggcta taaagcattt
     2281 tcaaaagcct atgatattga attcaagaaa atatttccaa tgcaaattgg cttaatctac
     2341 acagcgctta aaaacaatca aatggatgtg gcgcttggtt attcaacaga cggacgtatc
     2401 ccaacttaca atttaaaact attaaaagat gataaaaaat tcttcccacc atatgatgct
     2461 tcagctctag caacagatga aattttaaag aaacatccag aattaaaaac gactatcaat
     2521 aaattaaaag gtaaaatttc gacagaagaa atgcaaaaac ttaattatga agcggatggc
     2581 aaattgaaag aaccgtccat cgtagcgcaa gaattcttgc aaaaaaataa ttactttgaa
     2641 ggtaaaaact aaggaggtgc caaaagatgg acacattaaa acaattaatt gattattacc
     2701 aaacaaatgg aagttatgtc atggaagagt tctggcggca tttcttgatg agtgcttacg
     2761 gagttatctt cgcagcaatc atcgcaatac cgctcggagt atatattgca agaaaaaaac
     2821 gcttagctgg ctgggttatc caaatcgcta atatcatcca aacaattccg gcactagcaa
     2881 tgttagccgt acttatgctt ataatgggct tagggacgaa tacagtcgtc ttatccttat
     2941 tcctatattc tttactacca attctaaaaa acacctatac gggcattaga aacgttgatg
     3001 gcgcactttt agaatctggt aaagcgatgg ggatgacaaa atggcaagta ctacgcctca
     3061 tagaaatgcc actcgcatta tctgttatta tggcaggtat tcgaaatgca cttgttattg
     3121 ctattggtgt agcggcaatt gggacattcg ttggagcggg aggtctcggt gatattattg
     3181 tacgcggaac aaatgcaaca aatggtactg ctatcatttt agctggtgct atcccaaccg
     3241 cagttatggc catattagcc gatgtacttc tcggttgggt cgaacgcaca ctaaacccag
     3301 ttaaaaacaa aagaaaatca ctaactgaag ccttataaaa atatacgaaa acacaaccta
     3361 tcatttctat aaaacggttg tgtttttcgt ttgacaaaga atgtttcccg tagtaaactt
     3421 tttatcataa acgaaagaag gtcagggagc atgaaaaagg ataaaacaga acgtacaaaa
     3481 caaagctgga gaaaagcaca gaatgctccc agcttaagcg aagtaaataa ttccgtagct
     3541 attcctaaaa acgcaaaatt tttccgtaaa ttatttgcct ttatggggcc aggtgcactt
     3601 attgcggtcg gctatgtcga tccagggaac tgggcaactt ctattgccgg cgggtcagaa
     3661 tttggttaca cattgttatc cgttatttta atttctaata ttctagccgt tttattacaa
     3721 tcacttgcat caaaattagg cattgtcacc ggtcgcgatt tagcccaagc ttcaagtgat
     3781 cacttttcta aaccatttgg attcgttctt tggattttag ctgaattagc gattatagca
     3841 acagatatcg cagaagtcat cggtagtgcg attgcgctta atttactatt tgggattcca
     3901 ttaatttggg gagtttgtat tactgcatta gatatttttc tcgtattatt tttacaacat
     3961 aaaggtttcc gctacataga agttattgtt attactttaa tggttacgat tcttgtatgt
     4021 tttggtgcgg aaatggtgat gtctcatcct gatatgcaag caatagcaaa aggttttatt
     4081 ccacaatcag aaattgttac taatccagct atgctttata ttgcacttgg tattcttggg
     4141 gcaacagtga tgccacataa tttatatttg cattcatcta ttgttcaaac cagacaatac
     4201 gctcgaacaa aagaagggaa gaaagaagcg attcgttttt cctttatcga ttccactttt
     4261 tctttaacga ttgcattatt aatcaatgca tcgattttaa ttttagcggc tgccgctttt
     4321 tatacgaccg gtcagcataa tgtcgctggt attgaggatg cttacaaatt actcaatcca
     4381 acacttggaa gcagtatcgc cagcactgtt tttgcagtag cattactcgc atcagggcaa
     4441 aattctactt taacaggaac attagctggt caaatcgtca tggaaggttt ccttaatatc
     4501 cgtttaaaac cagtagtgcg ccgtttgtta acacgtgtac ttgcaatcgt tccagctgtt
     4561 attatcacag cactttacgg ggcaaatggt atcaatgaac tactcatttt tagccaagtt
     4621 attctatcaa tgcaattatc gttcgcagtt atcccattag ttatgttcac aagtgataaa
     4681 caaaagatgg gcgaattcgt caatccaaca tggttaaaaa tcatttcttg ggctgtcgcc
     4741 atttttattg cagtcttaaa catctacttg ttattttata ctttgacgtc attataaata
     4801 agggaagaag acaataatta tattatgtaa acaattaaaa ataattttct catttctttc
     4861 cctcgaaatt ttcat
//
LOCUS       DASDXX010000187         4767 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.187, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000187 DASDXX010000000
VERSION     DASDXX010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4767
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.187"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(79..216)
                     /locus_tag="U0280_002463"
     CDS             complement(79..216)
                     /locus_tag="U0280_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014092656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272387.1"
                     /translation="MTKVILTIFAIIVPAFLGFILAYQIYKKKTATYMPLKNEFVHWA
                     K"
     gene            367..1080
                     /gene="treR"
                     /locus_tag="U0280_002464"
     CDS             367..1080
                     /gene="treR"
                     /locus_tag="U0280_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HEM2272388.1"
                     /translation="MNKKNKFFDIYLELEQDITSGVYPAGTLLPSENVLAKRFSVSRE
                     TIRKALVLLLENGCIQKLQGKGSIVIDRERYSFPVSGLTSFKELQKSEHMNATTEVIR
                     NERTTLPDRIADFAGLPHGSNCLAILRVRYLEGEATILDYDYLLDKTEPIANEILEDS
                     LYQYLENEKGYEISYAQKEITVEPLNAEDKKYLALHGDTHVVVVKSTVFLKDTTLFQY
                     TESRHRLDKFRFIDFARRR"
     gene            complement(1111..2757)
                     /gene="treC"
                     /locus_tag="U0280_002465"
     CDS             complement(1111..2757)
                     /gene="treC"
                     /locus_tag="U0280_002465"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HEM2272389.1"
                     /translation="MTKFAQKTIYQVYPKSFYDTTGDGTGDIPGITAKLDYLQKLGIE
                     MIWLNPFYPSPQNDNGYDIADYTAVDPLFGTMDDVTTLIKEAKKRNIGIMIDLVLNHT
                     STEHPWFKKALAGDPFYRDFYYFRPAKADGSPPTNWVSKFGGNAWEKLPDSSEYYLHL
                     YDVTQADLDWANPNVREALFDVVNFWIDKGVEGFRLDVLNVIAKPKFLEDDFEGDGRR
                     FYTDGPGIHAYLKELHERTFGDKPIITVGEMSSTDIDNCIRYSNPDEKELSMVFHFHH
                     LKVDYPDGEKWRLADVNFENLKSIFHTWQVAMSEENGWDALFWNNHDQPRALGRFASD
                     KPEHYYHSATLLGATIHFMRGTPFVYMGEEIGMMNPKFPTIDDYVDVETLNHFDILQK
                     NGLSEQEVMAIIKERSRDNSRTPMQWDDSQNAGFTTGTPWLKVADNASEINVQAALSN
                     KTSIFYFYQKLIALRKEYPVIQTGDYTPYWTDEDLIIAYKRSNEITSLLSIHHFGSTT
                     KKIQLPNEFLNAKVLLSNYERQTISSELELAPYETLTLIR"
     gene            complement(2776..4260)
                     /gene="treP"
                     /locus_tag="U0280_002466"
     CDS             complement(2776..4260)
                     /gene="treP"
                     /locus_tag="U0280_002466"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HEM2272390.1"
                     /translation="MVDYTKDASALLELIGGKENISSVTHCATRMRFVLQNPDNADVE
                     AIEDIPAVKGTFTQAGQFQVIIGNDVAIFYNEFSKISGVEGVNKEDAKVDAKKNMSIL
                     QRLLAGLAEIFTPLIPAIVVGGLILGFRNVIGDIKFLEDGTKTIVDVYPFWAGVYSFL
                     WLIGEAVFHFLPVGITWSIAKKMGTTQILGIVLGLTLVSPQLLNAYSVVETKAGDIPV
                     WDFGFAQVQMIGYQAQVIPAIMAGFLLAYLEIWLRKFIPNAISMIFVPFFALVPTVLA
                     AHVILGPIGWKIGDAISNVVYAGLTGGLSWLFAALFGFLYAPLVVTGLHHMTNAIDLQ
                     LMSQFGGTNLWPMIALSNIAQGSAVLAIIFLHRGNEKEEQVSIPATISCYLGVTEPAM
                     FGINLKYLYPFVAAMIGSAIAAVVSVSSGVMANSIGVGGLPGILSINPKYYAVFAVCM
                     LITIVVPFILTVLFRKYNILNKVDTAPIRTFGKKEYRESAKTTN"
     gene            4378..>4767
                     /locus_tag="U0280_002467"
     CDS             4378..>4767
                     /locus_tag="U0280_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2272391.1"
                     /translation="MKHVRTAAIITHQNKILLHSNQEEDYWTLPGGAVENESTKEGLK
                     REMKEELGEDVAILELSIIAENRFLYRGEEIDSIEFYYAVKLLPESSLLNQPTFTKIE
                     EFGQYGEEAYKLHFKWFDIDKLKNITIL"
BASE COUNT         1562 a          924 c          878 g         1403 t
ORIGIN      
        1 aacactaata acaattttga tgacaagtgg tttttcactt tctgtttttt tcaatttgtt
       61 ttcctcctta atgtgcgctt atttagccca atgtacaaat tcatttttta atggcatata
      121 agtggctgtt tttttcttat agatttggta agcaagtata aatccgagaa acgcaggaac
      181 gataattgca aaaatagtta aaataacttt agtcatagaa aatacctcct cttaaatcaa
      241 aacacatgtt cagaccttac tactaatagt gtaccaaatt tcacgtgatt ttggtaataa
      301 agcgagctag caaatttcgg ttacaattat gggtaaatgt gctacaatag ccttgggtga
      361 gtaaatttga ataaaaaaaa taagtttttt gacatttatt tagaattaga gcaagacatt
      421 acatcaggcg tttatccagc aggcacacta cttccaagtg aaaatgtcct ggcgaagcgt
      481 ttttcggtat cccgtgagac cattagaaaa gcacttgtat tattgcttga aaacggctgt
      541 attcaaaagc tccaaggaaa aggatcgatt gtcattgacc gagaacgcta ttcttttcca
      601 gtctctggtt taactagttt taaggaatta caaaaatccg aacatatgaa tgcgacaacg
      661 gaagtcatcc gaaatgaacg aaccacttta ccagatcgaa ttgctgattt tgctggtctt
      721 ccgcacggct caaactgctt agctatcctc agagtgcgct atttagaagg agaggcaact
      781 attttggatt acgattattt attagacaaa actgaaccaa ttgcgaatga gattttagaa
      841 gactctttgt atcaatactt agaaaatgag aaaggctatg aaatcagtta tgctcaaaaa
      901 gaaataaccg tggaaccgct gaacgccgaa gataaaaaat acttagcatt acatggtgat
      961 acgcatgtag ttgtcgtaaa aagtaccgtg tttttaaaag atacaacact ttttcaatac
     1021 acagaatcgc gtcaccgact ggataaattc cgttttatag attttgcaag aagacgctaa
     1081 aaagcctgag aattgtttct caggcttttt ttatcgaatt aaagttaatg tttcataagg
     1141 tgctaattcc agctcagaac tgattgtttg acgttcataa ttagaaagaa gtactttagc
     1201 atttaaaaac tcatttggta gttgaatttt tttcgtagtc gagccaaaat ggtgaatgga
     1261 aagaagcgaa gtaatttcat ttgaacgctt ataggctata atcaaatctt catccgtcca
     1321 atatggcgta taatcacccg tctgaatgac agggtattct ttccgtaatg caataagctt
     1381 ttggtaaaaa tagaaaatgc tcgttttatt agataaggct gcttgaacat ttatttcact
     1441 tgcattatcc gctactttta gccatggagt accagttgta aagccagcat tttgcgaatc
     1501 atcccattgc ataggtgtcc gactattatc tcgcgaacgc tctttgataa tcgccataac
     1561 ttcttgctca ctaagtccgt ttttttgtaa aatatcaaaa tggttgagcg tttccacatc
     1621 cacataatca tcaatcgtag gaaattttgg attcatcatc ccgatttctt cccccatata
     1681 aacaaacggt gtcccgcgca taaagtgaat cgttgcgcca aggagggttg ccgaatgata
     1741 ataatgttcc ggtttgtcgg aagcaaagcg accaagtgct cgaggttggt catggttgtt
     1801 ccagaaaagc gcatcccatc cattttcttc tgacatcgcg acttgccacg tatggaaaat
     1861 agattttaag ttctcgaaat tcacatccgc taaacgccat ttttctccat caggatagtc
     1921 taccttcaaa tgatggaaat gaaaaaccat cgataattct ttttcgtctg gattactata
     1981 acgaatgcag ttgtcaatat ctgtagagga catttctcca accgttataa ttggcttgtc
     2041 gccaaaagtt cgttcatgta gttcttttaa gtaagcatgt attcctggtc catctgtata
     2101 aaaacggcgg ccgtcgcctt caaaatcatc ttctaaaaac ttaggtttgg caatcacatt
     2161 taatacatct aaacgaaaac cttccacgcc tttatcaatc caaaaattca cgacatcaaa
     2221 gagtgcctcg cgtacattcg gattggccca gtctaaatca gcttgcgtaa catcgtataa
     2281 atgcaaatag tactcagagg agtcaggcaa tttttcccaa gcattaccac cgaatttgga
     2341 aacccaattt gttggagggg aaccatcggc ttttgctggg cggaaatagt agaaatcacg
     2401 atagaatgga tcaccagcaa gcgctttttt aaaccaagga tgctctgttg aagtatgatt
     2461 caatactaag tcaatcataa taccaatatt tctttttttc gcttccttga taagcgttgt
     2521 cacatcgtcc atcgtaccaa ataaaggatc aaccgcggta tagtcagcga tatcatagcc
     2581 gttatcattt tgcggagaag gataaaatgg attcagccaa atcatctcaa ttccgagttt
     2641 ttgtaaataa tcaagcttgg cagtgatacc gggaatatcc ccagtaccat cgccagtcgt
     2701 atcataaaag gatttcggat acacttgata aattgttttt tgagcaaact ttgtcataaa
     2761 gggaagcctc actttttagt tggttgtttt tgcagattca cgatactcct ttttaccaaa
     2821 cgtacgaatt ggtgcagtat ctactttgtt taaaatatta tatttgcgga ataatacagt
     2881 tagaatgaaa ggaacaacaa tcgttattaa catacatact gcaaaaacgg cgtaatattt
     2941 agggttaatg gacaagattc caggtagtcc tccgacacca attgagttag ccataacacc
     3001 actagataca gaaaccacag ccgcaattgc cgaacctatc atggcagcta caaatggata
     3061 taagtatttt aaattaatcc cgaacatcgc aggttccgta acaccaaggt aacaagaaat
     3121 agttgctgga attgaaactt gttcttcttt ttcattgcca cgatgtaaga aaataattgc
     3181 tagaacagcg gacccttggg cgatgttaga aagtgcaatc atcggccaga gattcgttcc
     3241 accaaattga ctcattaatt gtaagtcgat ggcgttggtc atatgatgca gtcccgtgac
     3301 aacgagcggg gcatatagga agccaaatag tgcggcgaat aaccaactta gtccaccagt
     3361 caagccagca taaacgacgt tcgaaatcgc gtcgccaatt ttccaaccaa ttggtccaag
     3421 aataacatga gctgcaagaa cagtaggtac gagagcaaag aatggaacga aaatcatcga
     3481 aatggcattt ggaataaatt tacgcaacca aatttcgaga taggctagta agaatccggc
     3541 cataatggca ggaataactt gcgcttgata cccaatcatc tgtacttgag caaagccaaa
     3601 gtcccaaact ggaatatcgc ctgcttttgt ttcaacaacg ctataagcat ttagtaattg
     3661 cggggaaaca agcgttaaac caaggacaat cccaagaatt tgtgtggttc ccattttttt
     3721 cgcgatggac catgtaattc caactggtag gaagtggaat acagcctcac cgataagcca
     3781 taagaaacta taaacaccag cccaaaatgg ataaacatcc acaatcgttt tcgtgccgtc
     3841 ttctaaaaac ttaatatctc caattacgtt acggaaaccg agaataagac ccccaacaac
     3901 aattgctgga attaatggag tgaatatttc agctaaacca gcaagtaaac gctgaagaat
     3961 actcatattt ttcttcgcat ctactttggc atcttcttta ttgacacctt ccacaccact
     4021 aatttttgaa aattcattat aaaaaatagc tacatcatta cctataatta cttgaaattg
     4081 accagcttgt gtaaatgtcc cttttactgc tggaatgtct tcgatggctt caacatcggc
     4141 attatctgga ttttgcaaaa caaaacgcat tctcgtagca caatgtgtga cagatgatat
     4201 attttctttg ccaccaatta actctaaaag agcgcttgca tcttttgtat agtcaaccat
     4261 aaaacttcct ccttttttaa cttgtatata caagttgttc gccattacta tactataaat
     4321 aatttgaaag cgcaaccact ttatttgtgc taaaataaaa aagaaggagg agtggccatg
     4381 aaacacgtta gaactgcagc aattatcacg catcaaaaca aaattttgct ccactcaaac
     4441 caagaagaag attactggac acttccgggc ggtgcagtgg aaaatgaatc aacaaaagaa
     4501 ggattaaaac gtgaaatgaa agaagaactc ggggaagatg tggctatttt agaattgagc
     4561 attattgcgg aaaatcgctt tttatatcgc ggcgaagaaa tagatagtat tgagttttat
     4621 tatgcggtta aactgttacc agagagcagt ttacttaatc aacctacatt tacaaaaata
     4681 gaagaatttg gtcaatacgg ggaagaggca tataaactgc attttaaatg gttcgatata
     4741 gacaagttga aaaatatcac catttta
//
LOCUS       DASDXX010000188         4765 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.188, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000188 DASDXX010000000
VERSION     DASDXX010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4765
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.188"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(208..1704)
                     /gene="lysS"
                     /locus_tag="U0280_002468"
     CDS             complement(208..1704)
                     /gene="lysS"
                     /locus_tag="U0280_002468"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEM2272392.1"
                     /translation="MSNENHEELNDQLIVRREKVDTLREEGIDPFGEKFIRSISPEEI
                     ETKFADKSKEELEEAAIEVSVAGRIMTKRVKGKVGFTHIQDRFHQLQIYIRKDAIGED
                     AYAVFKLADLGDIIGIKGTIFRTNTGELSVKATEFTLLSKSLRPLPDKYHGLKDVEQR
                     YRQRYLDLITNEESQNRFVMRSKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFI
                     THHNALDMELYLRIALELHLKRLIVGGMDKVYEIGRVFRNEGTSTRHNPEFTMLESYA
                     AYEDYEDVMDLVEGLVSTVCKQVNGTTEITYGEYNVDLTPNWRRIHMADAVKEYVGVD
                     FWNVTSDEEARELAKKHNVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISP
                     LAKKNKEDDRFTDRFELFIVGREHANAFSELNDPIDQRERFEAQMKEREQGNDEAHGM
                     DADFLEALEYGLPPTGGLGIGIDRLVMLLTDAPSIRDILLFPTMKRRD"
     gene            complement(1819..2814)
                     /gene="dusB"
                     /locus_tag="U0280_002469"
     CDS             complement(1819..2814)
                     /gene="dusB"
                     /locus_tag="U0280_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEM2272393.1"
                     /translation="MFKIGNVEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMIS
                     DKGIAYRNAKTLDMLYIDEKEKPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGC
                     PVNKIIKCEAGAKWLLDPNKVYDMVAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAA
                     ERAGAAAVAMHGRTRVQMYEGSANWDVLRDVKRELKIPFMANGDVRTPEDAKRILEHT
                     GADGVMIGRAALGNPWMIYRTVKFLETGELLPEPEPREKMQTAMLHLNRLVELKGENI
                     AVREFRQHAAYYLKGARGSTRAKVAANQATKQSEMEAILNEFVLQYEEKALAKQD"
     gene            complement(2890..3369)
                     /gene="folK"
                     /locus_tag="U0280_002470"
     CDS             complement(2890..3369)
                     /gene="folK"
                     /locus_tag="U0280_002470"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEM2272394.1"
                     /translation="MAKAFLSIGTNLGERLENLNDALSGLAASDKIKITNVSSVYETD
                     AVGYEDQAAFLNIAVEIETDFPPVDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYD
                     DVKIDTEKLKIPHPYMKERAFVLIPLIEISPEKSNLVDNPAILEEQGVRKIKNQVNW"
     gene            complement(3362..3736)
                     /gene="folB"
                     /locus_tag="U0280_002471"
     CDS             complement(3362..3736)
                     /gene="folB"
                     /locus_tag="U0280_002471"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEM2272395.1"
                     /translation="MDKIYLNELVFYGYHGVLAEETKLGQTFRVSLILGLSTKKAGIS
                     DSVDDTVSYAEVYETVKEIVEGTPFKLIEALAEKIATEVLTGYPLLEEVTVKLIKPNP
                     PIPGHYDSVAVEIERKRSDLNG"
     gene            complement(3750..4565)
                     /gene="folP"
                     /locus_tag="U0280_002472"
     CDS             complement(3750..4565)
                     /gene="folP"
                     /locus_tag="U0280_002472"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEM2272396.1"
                     /translation="MKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAE
                     DGAAIIDVGGISTRPGFSEVTPEEELNRIIPVIKAVRTKLPDIWISVDTWRAEVAEKA
                     ILAGANMINDQWGAKKEPKIAEVAAKYNVPICLMHNRENTQYDNFLEDVKKDLLESVA
                     IAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVL
                     GTTPEDRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITKL"
BASE COUNT         1286 a         1033 c          834 g         1612 t
ORIGIN      
        1 tagtcaacaa agtcaagatg ttttttcaaa aaaatttaat ttcttgatga gcattttgcg
       61 tttgtttaac tggaacgttt ataaatatat catgttttta tagggattgc aagcatattt
      121 tgagaaaaag tttctctttg gcaaatttgt ttttttctga gaaaaaaaca aaatccagaa
      181 ccgatataat cagctctgga tttttaatta gtcgcggcgt ttcatagttg ggaataatag
      241 gatatcacga atagacgggg catctgttaa tagcattact agacgatcga tacctattcc
      301 aagtccacca gtcggcggta gaccgtattc taaagcttca aggaaatctg catccattcc
      361 gtgcgcttca tcattacctt gctcacgttc tttcatttgc gcttcaaaac gctctctttg
      421 atcaattgga tcgtttaatt ccgagaatgc atttgcatgt tcacgaccaa cgataaataa
      481 ttcaaaacgg tcagtaaaac ggtcatcttc tttgtttttc ttcgctaatg gtgaaatttc
      541 caccggatgt ccgtaaacaa aggttggttg aataagcttt tcttctacgt atgtttcaaa
      601 aaactcatta agaatgtgcc cgtatgtcat gtgctccgtt actggcacat tatgtttttt
      661 agctagttcg cgtgcttctt catcggaagt tacgttccag aaatccactc cgacatattc
      721 ttttacagca tctgccatgt ggatacggcg ccagtttgga gttagatcta cattgtattc
      781 accgtatgtt atttctgttg ttccatttac ttgtttgcat actgtagata ctaaaccttc
      841 taccaaatcc ataacatctt cgtaatcttc gtatgctgca taggattcta acattgtaaa
      901 ttctgggtta tgacgcgtgg aggttccttc attacggaaa acgcggccga tttcgtatac
      961 tttatccatc ccaccaacga ttaggcgttt taagtgtagt tctaaagcaa ttcgtaaata
     1021 taattccata tcaagtgcat tatggtgcgt aataaatggt tttgcagcag caccaccagc
     1081 aattgtatga agcactggag tttctacttc taggaatcct tgattatcca tgtaatcacg
     1141 agtgtatttc aagattttac tgcgcatcac aaaacgattt tggctttctt cgtttgtaat
     1201 taagtctaaa tagcgttgac gatagcgttg ttctacgtct tttaagccat gatatttatc
     1261 aggaagtgga cgtaatgatt tggaaagcaa agtgaattcc gttgctttaa cagaaagttc
     1321 acctgtatta gtacggaaaa tagtcccttt tataccaata atgtcaccta gatccgctaa
     1381 tttgaagact gcataagcat cttcgccaat cgcatcttta cggatataga tttgtaattg
     1441 atggaaacgg tcttgaatat gtgtgaaacc tactttgcct ttcacacgtt tcgtcataat
     1501 acgacctgct acagaaactt caatagcagc ttcttcaagt tcttcttttg atttatcagc
     1561 gaattttgtt tcaatttctt ccgggctgat ggaacggatg aatttttcgc caaaaggatc
     1621 tatgccttct tcgcgtaatg tgtccacttt ttcgcgacgg acgatgagtt ggtcatttag
     1681 ttcttcatga ttctcgttac tcatataggt acactcctat tctattcatt tctacagatg
     1741 tttccattat acgctttttt ggtctggttt ttctagtata aatttaaaaa ttgccccgaa
     1801 atctcgaggc aatcctaatt agtcttgttt cgctaatgct ttttcttcat attgaagaac
     1861 aaattcattt aaaattgctt ccatctctga ttgttttgtc gcttggttag cagccacttt
     1921 cgcgcgagtg cttccgcgag ctccttttag ataataagct gcgtgttgtc taaactcgcg
     1981 aactgcaatg ttttctcctt ttagctcgac taggcgatta aggtgaagca tggcagtttg
     2041 cattttttcg cgtggttctg gttctggaag aagttcgcct gtttctagga atttcaccgt
     2101 gcgataaatc atccatgggt ttccaagtgc agctcgacca atcattactc catctgctcc
     2161 agtatgttct aaaattcgtt tggcatcttc tggtgttctc acgtccccat ttgccatgaa
     2221 cgggattttc agttcgcgtt ttacgtctct aagcacatcc cagttcgcgc taccttcgta
     2281 catttgcaca cgagtacggc cgtgcattgc aacagctgca gctccggcac gttcagcagc
     2341 aagtgcattt tcgatagcaa agacatgttc ttcgtcccaa ccaatacgca tttttactgt
     2401 taccggttta tcaacagcgt ccactacagc agctaccatg tcatacactt tatttggatc
     2461 aagtagccat ttcgctccag cttcacattt gataattttg tttaccggac agcccatatt
     2521 aatatcaata atatctgccg ttgtattttc agctacgaat ttcgcagctt ctacaagcgt
     2581 ttctttctca ccaccaaaaa tttgtaagct caatggtttt tctttttcat caatatatag
     2641 catatcaagc gttttagcat tgcggtatgc gattcctttg tcgctaatca tttcacagca
     2701 aacgagacct gctccgaatt ctttgaccgt taaacggaat gcggaattgg atataccggc
     2761 cattggcgcc acaactactt ggtttttaat ttctacgtta cctattttaa acattaatgg
     2821 taaacccctt cctcttaaat tgcgctagtg atatgttatc ataatcagtt ttttctgcaa
     2881 gtgccaattt taccagttga cttgattttt tattttccga acaccttgtt cttccaaaat
     2941 ggctggatta tctacaagat tgcttttttc tggtgaaatc tctattaatg gaatcagcac
     3001 aaaagcgcgt tctttcatat aaggatgtgg gattttcagc ttttctgtat cgattttaac
     3061 atcatcatat aataaaacat cgatatcaat gagtcgcgga ccccacttaa ataatcgaac
     3121 tcgccccaat tcaagttcga gcgcaaggca aaaatctagt aaatcaactg gcggaaagtc
     3181 cgtttcaatt tctacagcga tatttaaaaa tgccgcttga tcttcgtaac ctactgcgtc
     3241 tgtttcgtat acactagata cgttggtaat tttaatttta tctgaagcag ctaaaccact
     3301 tagtgcgtca tttaaatttt ctaaacgttc gccaaggttt gtaccaattg atagaaacgc
     3361 cttagccatt caaatcactt cttttacgtt caatttccac tgcaacagaa tcataatgtc
     3421 ccggaatcgg aggatttggt ttaataagtt ttacagtcac ttcttctaat agaggataac
     3481 cagttaaaac ttccgttgca attttttcgg caagcgcctc gattaatttg aatggcgttc
     3541 cttccactat ttcttttacc gtttcataaa cttctgcata gctgactgtg tcgtctacgc
     3601 tatccgatat tcctgctttt ttagtagaaa ggccgagaat aagcgatact ctaaacgttt
     3661 gtcctagttt tgtttcttcc gccaaaactc catggtatcc gtaaaacact aattcattta
     3721 aataaatttt atccaactaa agcacctctt tataattttg taatatctaa tttgccagta
     3781 atcgcatctg tcattcgtac catgcgcgca atgggaagta catcgtgtac acgagtaatt
     3841 gtgcaacctt tcgaaaatcc gtaaactgta gttgctccag ttccttccat tctatcctct
     3901 ggagtagttc ctaagacgag accaattgtc gactttctac tcgtaccaag taaaacctcg
     3961 taaccaagcg ccactatctc atcaatgcgt cgtaacactt ctaaattctg cgcaggtgtc
     4021 ttaacaaaac cgaaacccgg atcaagaata atatgttcat ctggcacgga tgccgcttta
     4081 gcaattgcaa cactttctaa taagtctttc ttcacatctt ccagaaaatt atcgtattgc
     4141 gtgttttctc ggttgtgcat caaacaaatt ggcacgttat atttcgcagc tacttccgca
     4201 attttcggtt cttttttggc accccattga tcatttatca tattagctcc tgctaaaata
     4261 gctttttcag ccacttcggc acgccaagta tcaacagaaa tccatatatc cggaagtttt
     4321 gtcctaacag ctttaatgac aggaataatt cgattaagtt cttcctcagg cgttacctct
     4381 gaaaaaccag gccgagtaga tattccacca acgtcaataa ttgctgctcc atcttctgcc
     4441 atttgtaacg ctcgagccac agcttcttcc acttgcatat atttcccgcc atccgaaaaa
     4501 gagtctggcg taacattcag tatccccatg accataccta agtgatccct tttccacttc
     4561 ttcaagccca aacacctctt tccgagattt attatagcag aattcagtga ttttagcgca
     4621 caaaaaaacc gatgcggaaa agggagtaaa ccgcatcggt caaaaaggga gtttgggatc
     4681 ttcattctaa aaagggggga gaagaatgaa aatgttttgc ttgttgttag cttatgacta
     4741 tatattaacc aagtttttgg tggat
//
LOCUS       DASDXX010000189         4760 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.189, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000189 DASDXX010000000
VERSION     DASDXX010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4760
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.189"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..235
                     /locus_tag="U0280_002473"
     CDS             <1..235
                     /locus_tag="U0280_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272397.1"
                     /translation="NHAQSSGPFNVKMGNLGFELLTKPKFNYLIFPDQGIGKHNKTKQ
                     DFMQLGVEESSQEIVEMLEQAVFKEINDTLGGK"
     gene            237..815
                     /locus_tag="U0280_002474"
     CDS             237..815
                     /locus_tag="U0280_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2272398.1"
                     /translation="MATIVEDFDATRVTNVGTKFTGDTASIAFGCLGSIEGETELLEL
                     VKKCEGVETKKKTTPQKMTLTLTGHVKVDVLRDIFGLSNEGLKVGVYSYGADSLSKPF
                     ILTADVLDEFEAQTKLIAFSNCVAATGLKVTVENGADEVAEIELEFTAMIDDNRKCYY
                     EAIVSELDATGRDAFVKQWHTNFTPEMVVATP"
     gene            936..1298
                     /locus_tag="U0280_002475"
     CDS             936..1298
                     /locus_tag="U0280_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272399.1"
                     /translation="MEFTIDFLDGTKAQLDSNVTMLTLYRLQNEGEGAVDGKFLKGFM
                     QKEADLDPISIAQAMYAAYRQATDKKKAKNFEEFMENYQMDLEIDMQIYFAIVTKRAR
                     DEFAKQFKKKTGSSKGKK"
     gene            1481..4561
                     /locus_tag="U0280_002476"
     CDS             1481..4561
                     /locus_tag="U0280_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEM2272400.1"
                     /translation="MANNQAKVTFKVFNQDFNRAMAEMNADSKKLRQELKLEQEQLKN
                     TGSETDKLAADLNGLQKQYDVASQKTKETAQQLEKVKTKFGENSTEASRMESALKSAQ
                     ITEQQLANKIELTTDALEKAKSAETGRVASLNKLQSEQSNLEAQSEKLASEYKLESAA
                     MEGTATEAEKLARAEKYLADQTNVAEQKIKNMEQQLELVKQEYGENSTEALKMETSLN
                     EAKMSVSKLGNELTEFKNDSNNAGQGMDELNNKMSGAVMMEAAEHIAAVGEKLKEIGQ
                     YALEAFREVDEGLDTIITKTGATGKAGEDLSNVFDNIAGNSKFEFQQIGDAVGELNTQ
                     FGFTGKELEKNSMKLLKFSDINGSDVTNSTMKAKQALEAYGLENKDLSMVLDSVTYVA
                     QGTGQSVDDIFDKAVKGAPQIEALGLSFADGAQLMGNLDKAGVDSSATLSSLTKASVV
                     YAKENKTLAQGLSELEGKISGAKTETEKINLAAEVFGSKGAPRMVKAIEDGRLSLDGL
                     AGTAEMASGTVSKIFEATLDPIDRQDVALNNVKMAMADLGNSIAEVLAPILDALSSVL
                     QKVSEWFNGLPAPVRQVTVVIGLLLIGFTALLPVITAIVAMIGILGTAMLGVVGIIAA
                     IVAGIAILVVGFKWLWDNCEGFRNFWIGLWEWIVAAFKAAWEYIQPGLQSIGDALKKF
                     WEEYGPTIIGALQAVWDFIVGFVAWLEPLWTFLWEGLKSTLKFAWDAILAIVQFALDY
                     LGGLIDFWAGIFTGDWDRVWKGIQEMTSAALEAIKGIFFALVRWIDNILKSLGIDMGA
                     IWKSITDATKTAWKWISDYIVNPIRDANNRAKLILAAFKAAFKITFDVIRDNIANTWS
                     KVEDKIIKPVKNAYDKVKNIVDDIKDTFKNLKIKFPKIEMPPMPHFSLKGKFSLKEMT
                     VPKLDVSWHKNGGFFNSASVIGIGEAGPEAAVPLVGKRMDPFADAVSNRMLSSLPSMA
                     QGKISENNNDVKVEINMNNNLYGAADEDRLVNKVKREITNSMNSKTTAWGGRTS"
     gene            4558..>4760
                     /locus_tag="U0280_002477"
     CDS             4558..>4760
                     /locus_tag="U0280_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2272401.1"
                     /translation="MNYQIFIDDVSCNDYDLCVAERPLLKTPEQDVEIREIRGRNGAF
                     IIPFAYKNVEEEISFNFLDDSKS"
BASE COUNT         1699 a          654 c         1067 g         1340 t
ORIGIN      
        1 aaatcatgcg caatcgtctg gaccttttaa tgtgaaaatg ggaaatttgg ggtttgaatt
       61 attaacaaaa cctaaattca actatttaat ttttccagat caagggattg gaaaacacaa
      121 taaaacaaaa caagacttta tgcaattagg tgtagaagaa tcatctcaag aaatagtaga
      181 gatgttagaa caagcagtat ttaaagaaat aaatgatacc ttaggaggta aataaaatgg
      241 caacaattgt tgaagatttt gatgcaacaa gagtaacaaa tgtaggtacg aaattcactg
      301 gtgatactgc aagtattgca tttgggtgtc taggttctat tgaaggtgaa acagagttac
      361 tcgaattagt aaaaaaatgt gaaggtgttg aaacgaagaa aaaaacaacg ccccaaaaaa
      421 tgacactgac gttgacaggt catgtaaaag tagacgtgtt acgagatatt tttggtttat
      481 caaatgaagg tttgaaggta ggagtttact cgtatggtgc tgacagttta agtaaaccat
      541 ttattttaac agcggatgtg ttagatgaat ttgaagcgca aacaaaatta attgcattct
      601 caaattgtgt ggcggcaaca ggattaaaag taacagtaga aaatggtgca gatgaagtag
      661 ctgaaattga attagaattc actgctatga ttgatgataa tagaaaatgt tattatgaag
      721 caattgtatc agagcttgat gctactggtc gcgatgcatt tgtaaagcaa tggcacacaa
      781 atttcacacc agaaatggtt gttgccacac cctgaaactc cccttgaatt gcctttggaa
      841 aatgaatctg gcatagggga cgactcagaa gaaacaactc aagattagac ggggtaaatt
      901 atcccgtctt ttttatttgc ataggaggaa ttttaatgga atttacaata gattttttag
      961 atggaactaa agcgcaatta gactcaaatg tcacaatgtt aactttatat cgattgcaaa
     1021 acgaaggtga aggtgctgtc gatgggaaat ttttaaaagg ttttatgcaa aaagaagcag
     1081 atttagaccc tatttcaatt gcacaagcaa tgtatgcggc gtatagacaa gctacagaca
     1141 aaaaaaaagc aaagaatttt gaagagttta tggaaaatta tcaaatggat ttggaaattg
     1201 atatgcaaat ttatttcgca attgttacga agcgagctag agatgagttt gcaaaacaat
     1261 tcaaaaagaa aacaggtagt tcaaaaggaa aaaaataaaa ctgccggaca tcattattga
     1321 atgtgtagag gatttgtaca ctttatatct ctatgtgttt gaactaaatc gtgatgatat
     1381 ctggcaactg cccttaacat ccgttcagat gatagcagag aaaaagactg caattgaaaa
     1441 ctggacaaat tatgagaacg aaaaggcagg tgggaaataa atggcaaaca atcaagcgaa
     1501 agttacattt aaagttttta atcaggactt caatagagcc atggcagaaa tgaacgctga
     1561 tagtaaaaaa ttgagacaag aattaaaact tgaacaagaa cagttaaaaa acactggatc
     1621 agaaactgat aaattagcag ctgatttaaa tggtctacaa aagcaatatg atgtagctag
     1681 tcaaaaaaca aaagaaacag cgcaacagct agaaaaggta aaaacaaaat ttggagaaaa
     1741 cagcacagaa gcaagtcgga tggagtcagc tcttaagagc gcgcaaataa cagaacaaca
     1801 acttgctaac aaaattgagc ttactactga tgctttagag aaggcaaaat cagcagaaac
     1861 tggtagagtt gcttctttga ataaattgca atcagaacaa tctaatttag aagctcaatc
     1921 ggaaaaattg gcaagcgagt ataaattaga gtcggctgcg atggaaggta ctgctacaga
     1981 agctgaaaag cttgctagag ctgaaaagta tcttgctgat caaacaaatg tagctgaaca
     2041 aaaaattaag aatatggaac aacagctaga attagttaaa caagaatatg gtgaaaatag
     2101 tacagaagct ttgaagatgg aaacatcatt aaatgaagca aagatgtctg tgtcgaaact
     2161 aggcaatgag ttgactgaat tcaagaatga ctctaacaat gccgggcaag ggatggatga
     2221 attaaataat aaaatgtctg gtgcggttat gatggaagcg gcagagcata tcgcagctgt
     2281 aggagaaaaa ctcaaggaaa ttggtcaata tgcacttgaa gcttttcgtg aagtagatga
     2341 aggtctggac acaatcatta caaaaacagg tgcgaccgga aaagccggag aagatttatc
     2401 aaatgtattt gataacattg caggcaattc taagtttgag tttcaacaaa ttggtgatgc
     2461 tgtgggtgag ctcaacactc aatttggatt tacaggtaag gaattagaaa aaaattctat
     2521 gaaactgttg aagttctctg atataaatgg ttctgatgtt actaacagta ctatgaaggc
     2581 gaaacaggca cttgaagctt atggattgga aaataaagat ttatccatgg ttcttgattc
     2641 ggtgacttat gttgcgcaag ggacaggtca aagtgtcgat gacatatttg ataaggctgt
     2701 caagggtgca ccacagattg aagcattggg tctatcattt gcggatggtg cacaattaat
     2761 gggtaatttg gacaaagctg gtgtcgattc aagtgccaca ttatctagtt tgacaaaggc
     2821 tagtgttgtg tacgcaaaag aaaataaaac tcttgcgcaa ggtttatctg aattagaagg
     2881 taaaatttcg ggagctaaaa cagagactga aaaaattaat ctagctgcgg aagtttttgg
     2941 ttcaaagggt gcgccacgaa tggtaaaagc tatagaggac ggtcgtttaa gtttagacgg
     3001 tcttgcagga acggcggaaa tggcttcagg aacagtgtct aaaatatttg aagcaactct
     3061 tgaccctata gaccgacaag atgtcgcttt gaataatgtg aaaatggcaa tggctgattt
     3121 ggggaactct attgcagagg tacttgcgcc aattctagac gcgctttcat ctgtcttaca
     3181 aaaggtgtca gagtggttca atggactacc tgcccctgtc cgacaagtga cagttgtaat
     3241 tggactgttg ctaataggtt ttaccgcatt gctcccagtc ataactgcga tagttgctat
     3301 gattggcatt ttaggaacag cgatgttagg cgtggtaggc attatagcag cgatagttgc
     3361 tggaattgct atattagtcg ttggattcaa atggttgtgg gataattgcg aaggttttcg
     3421 gaatttctgg ataggattgt gggaatggat tgttgcggct ttcaaagcag cttgggaata
     3481 tattcaacca ggtttacaat ctattggaga tgcacttaaa aagttctggg aagaatatgg
     3541 tccgacaatt attggagcgt tgcaagctgt ttgggacttt attgtaggct ttgttgcttg
     3601 gttagaacca ttgtggacat ttttatggga aggtttaaaa agtacactta aatttgcatg
     3661 ggatgcaatt ttagctattg ttcaatttgc tttagattat cttggtggtt tgattgactt
     3721 ttgggcaggg attttcacag gtgactggga tagagtttgg aaaggtattc aagaaatgac
     3781 tagtgctgct ttggaagcta tcaaaggtat attctttgca ctggttaggt ggatagataa
     3841 tattctaaag tctttaggaa tagacatggg tgctatttgg aaaagcatca ctgatgctac
     3901 aaaaacagca tggaagtgga ttagtgatta cattgttaat cctattagag atgcaaacaa
     3961 tagagccaaa cttattttag ctgcctttaa agccgccttt aagattactt ttgatgtaat
     4021 acgagataat atagcaaaca cgtggtcaaa agtagaggat aaaattataa aaccagtgaa
     4081 aaatgcatat gataaagtta aaaacattgt tgacgatatt aaagatacat ttaaaaatct
     4141 aaaaataaaa tttcctaaaa ttgaaatgcc tccaatgcca cattttagtt tgaaaggtaa
     4201 atttagttta aaagagatga cagttcctaa attggatgta agctggcata aaaatggagg
     4261 tttctttaac tcagcatctg tcattgggat tggagaagct ggtccggaag ccgctgtgcc
     4321 tcttgttggg aaaaggatgg acccttttgc tgacgctgta tcaaatagaa tgctttcatc
     4381 gctacctagt atggcacaag ggaaaatatc tgaaaacaat aatgatgtca aagttgaaat
     4441 taatatgaat aataatttat atggtgctgc tgatgaagat agattagtca ataaagtgaa
     4501 acgcgaaata actaatagta tgaattctaa aacaacagca tggggaggta gaacttcgtg
     4561 aattatcaaa tctttataga tgatgtctca tgtaatgatt atgatttatg tgttgcagaa
     4621 agacctttgc taaaaacacc tgaacaagac gttgaaatta gagaaattag aggaagaaat
     4681 ggtgctttta ttatcccgtt tgcatataaa aatgtagaag aagagatttc atttaatttt
     4741 ttagatgatt ctaagtcatt
//
LOCUS       DASDXX010000190         4678 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.190, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000190 DASDXX010000000
VERSION     DASDXX010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4678
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.190"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..953)
                     /gene="recA"
                     /locus_tag="U0280_002478"
     CDS             complement(<1..953)
                     /gene="recA"
                     /locus_tag="U0280_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEM2272402.1"
                     /translation="MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLA
                     LDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYA
                     KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
                     HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYST
                     VRLEVRRAEQLKQGTDVMGNKTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMA
                     AEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEIS"
     gene            complement(1226..2470)
                     /locus_tag="U0280_002479"
     CDS             complement(1226..2470)
                     /locus_tag="U0280_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEM2272403.1"
                     /translation="MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVG
                     DNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQILAAHLQKQLVEDEYHMNKINE
                     YFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
                     FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNE
                     VVVRITATAKTKEEASRLVKETEEEILRREGTFLYGYGEVSLSELVTAMLLEKELTIS
                     AAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSPQVIKEKGVVSAECA
                     KEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDR
                     NHNRRRAVKQGFQLIKQFLDAN"
     gene            complement(2538..3116)
                     /gene="pgsA"
                     /locus_tag="U0280_002480"
     CDS             complement(2538..3116)
                     /gene="pgsA"
                     /locus_tag="U0280_002480"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEM2272404.1"
                     /translation="MNLPNKLTVIRIFMIPIFVILCVVPFDWGSVTWLDSTIPVTSLV
                     ATIIFIVAALTDWFDGHLARKYNLITNFGKFADPMADKLLVAAAFIILVEMHIAPSWV
                     VILIISRELAVTGLRLLLVEGGEVLAAGQLGKIKTFTQMIAIPLMLLNNFPFAWTGIR
                     VDLVFLYVCAFFAVWSGIDYFYKNRGVFKGSM"
     gene            complement(3207..4136)
                     /locus_tag="U0280_002481"
     CDS             complement(3207..4136)
                     /locus_tag="U0280_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272405.1"
                     /translation="MTELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVM
                     PGKFYARAFIKQYAEAVGLDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQ
                     SVGNQANTRNRFFDILPKILIALFIVFILFIVWFFLLNKQDNSTEKVKTDTNNPTVKV
                     EDSTKSKDTSKDTEKKDTTTNKDKSTETKDKKEDTTKEVEVTKGGTSGNATTYTVKNT
                     DKMTLSLSATGDSWIGVSDANGSTIQNETLSTQNPSAEIDLGDNKTVSIVIGNSPVTT
                     VKINGKQLELAPDLVKQVLTINLEASDTSSDAE"
     gene            complement(4187..>4678)
                     /locus_tag="U0280_002482"
     CDS             complement(4187..>4678)
                     /locus_tag="U0280_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2272406.1"
                     /translation="DAFIHAAGHAHYGLFQDTTDINITELWNVHMYMPMRLIRTFMPK
                     LMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPG
                     VVETKMMDQFSDEEKEILRQEIPLNRFAQPEEIAEIVAFLTSKKASYITGEVLRLNGG
                     WLM"
BASE COUNT         1350 a          977 c          747 g         1604 t
ORIGIN      
        1 gaaatctcat cacgaatatc tgtatgttct tttagatatt gttttgcgtt ttcacgacct
       61 tggccgatac gttcttcttt gtaagaatac catgaaccac tcttattgat tacatccact
      121 tcagcggcca tatcaacaag ctcgccttca cgtgaaatac cttcaccgta catgatatcc
      181 acttcagcaa tacggaatgg aggagctact ttgtttttta caactttaat ttttgttttg
      241 ttacccatta catctgtacc ttgcttaagt tgttctgcac gtcttacttc taaacgtaca
      301 gtcgaataga atttaagcgc acgaccacca ggtgtaatct ctgggttacc aaacataaca
      361 ccaacttttt cacgaatttg gttaatgaaa atagcaatgg tttttgattt attaataaca
      421 ccggaaagtt tacgcaatgc ttgggacatt aaacgtgctt gtagcccaac gtgtgcatca
      481 cccatctccc cttcgatttc agcacgtggt acaagtgctg caacggagtc aattactagc
      541 atatctacag caccacttct aactaatgct tctgcaattt ctaatgcttg ctctcctgta
      601 tcaggttgag atagtaataa ttcatcaata tttacaccta ggtttttagc ataagctgga
      661 tctagtgcgt gttctgcatc gataaatgca gctgttccgc cttgtgcttg tacttccgca
      721 atagcatgaa gtgcaacagt tgttttaccg gaactctctg gcccgtatac ttcaataata
      781 cgtccacgtg gatatccgcc gactcctaaa gcaatatcta atgctaatga gccactagaa
      841 atagtagata tattttggtc tgaatgttcc cctaatttca taatggaacc tttaccgaat
      901 tgtttttcaa tttgttttaa agcttggtct aatgccgctt gacgatcatt cacattgttg
      961 cctccttcaa taaatatcct aatagctgtt tttctacttc ttctctctca aaaaacagtc
     1021 agaatgtttt cctaaaatta ctataacgca ttttagagcg agaagcaagc aaaaagcgaa
     1081 catttattcg tattttttat tttgtgtaag caccggttgc tttcttcctc attataacgg
     1141 gattttcagc tttcgtctaa cactttttta ttgctcattt ccgttttttc tgcagatttt
     1201 tttccttttc ttctagaaaa aaagactaat ttgcgtctaa aaattgttta attaactgaa
     1261 atccttgttt tactgcacgg cggcgattat ggtttcgatc tcttccatag acaaactgaa
     1321 aagcctctgt ttcataacct ttaacgctta gtccaatcca aatagtgcca gcaggatgac
     1381 cttctaaact atctggacct gcaacacctg taaaactgat tccaatatcc gtcttacaaa
     1441 ggcggcttac attttcagcc atttccttcg cacattccgc actaacaacg cctttttctt
     1501 ttattacttg gggagatact tgtaatatag attgttttgt ttcttcactg tatgtcacca
     1561 taccaccttt gaaaattttc gaaatgccag gaaagcgggc aatttctgct tggaacaaac
     1621 cagcagtgaa actttctgcg gcagagatgg taagttcttt ttcaagtaac atcgccgtaa
     1681 ctaattcaga caatgacacc tctccatatc catataaaaa ggtaccttct cggcgcaata
     1741 tttcttcctc ggtttccttc acaagtctgc ttgcttcttc ttttgtttta gctgtcgctg
     1801 tgatacggac cacaacttca ttatcaccag catatgtcgc aatcgtcggg ttgacttgcg
     1861 tgacaatcaa atcatttaaa tcagcagcta attgtgactc tccaattcca aaaaagcgca
     1921 taattttgga ttctaaaatg ttttgatcgc cactttcgct taaaagtaat gggttagcat
     1981 agcttgtaaa cattggtttc atttcagatg gtggacctgg tagcaaaacg taagtatgat
     2041 tgttttctct taagtacatt ccagccgcaa agccaaaatc attatttaat acgatggaat
     2101 cttcaataat aaccgcttgt aatttattat tttcggtcat agtcctattc ctagaagtga
     2161 aatactcatt aattttattc atatggtatt catcttccac taattgcttt tgtagatgag
     2221 cagccaagat ttgttttgta atatcatcct cagtcggtcc aagtccgccg gtaaagatta
     2281 aaatgtcact tcggttttca gcgatttcga ttacttcttt taaacgtgtt gggttatctc
     2341 caactaccgt atgatgatat acatatattc cgtcagcagc taattcttgt gaaataaacg
     2401 cagcattaga attaacaatt tgccctagta atagttctgt tcctactgca atgatttctg
     2461 cacttgccat cttgccccat ctccaattcg attttttgta tagaaaaaag cacacaatgg
     2521 tatgcttttt tcatttatta catagaccct ttgaaaacac cacgattttt gtagaaataa
     2581 tcgatacctg accatactgc aaagaatgca catacataca agaacactaa atccacacga
     2641 atacctgtcc aagcaaatgg aaaattattt aataacataa gcggaatagc aatcatttgt
     2701 gtgaatgttt taattttacc aagttgacca gctgcaagta cttctccgcc ttcaactaaa
     2761 agtaagcgaa gaccagtaac agctagttca cgactaataa taagaataac tacccaagat
     2821 ggagcgatat gcatttctac aagaataata aatgcagctg ctacaagtag tttatcagcc
     2881 atcggatcag caaatttacc gaagttagta atcaaattat acttgcgagc taaatgtcca
     2941 tcaaaccagt ctgtaagagc cgctacaatg aaaataatag ttgctactaa actagttacc
     3001 ggaatagtgg aatcaagcca agtaacgctt ccccagtcga atggcactac acaaagaatg
     3061 acaaaaattg gtatcataaa aattcggata accgtcaatt tattaggtaa attcatcttt
     3121 ttctctcctt ttttacattt gaaaagtatg taattataaa aaatgttggc gaaatctaat
     3181 gagtagattt cgccatataa aacaaattat tcagcatctg agctagtatc acttgcttct
     3241 aaattaattg ttaatacttg tttaacaaga tcaggtgcaa gttctagctg tttaccattg
     3301 atttttacag ttgtaacagg agaatttccg ataacgatag aaaccgtctt gttatcacct
     3361 aaatcaattt ctgcagaagg attttgggtt gatagtgttt cgttttggat tgtactacca
     3421 ttcgcatcgg aaacgcctat ccaagaatca ccagtggcgc taagtgacag agtcattttg
     3481 tccgtatttt tcactgtgta cgtagtggca ttaccagacg tccctccttt agtcacttca
     3541 acttctttgg ttgtatcttc ttttttatcc tttgtttctg tagatttatc tttgtttgtt
     3601 gtcgtatctt ttttctcagt gtctttactt gtatccttgc tttttgtcga atcttctact
     3661 tttactgtag gattatttgt atctgttttc actttttccg tggaattgtc ttgtttatta
     3721 agcaagaaaa accaaacaat gaaaagaata aacacaataa ataaagcaat aaggattttt
     3781 ggtaagatat caaaaaaacg attacgagta ttcgcttgat tacctacaga ttgtgcaggc
     3841 atcggatttc ttttactttg tacccgtgtt ggctcattat ttactacttc ttgttgcggt
     3901 gtttccggaa cttcgctttc aaactcgtcg aaaagtgttg cgctatctag cccaactgct
     3961 tctgcgtatt gtttaataaa tgcccttgca taaaatttgc caggcattac agcataattt
     4021 ccttcttcaa tcgctaccaa ataacgtttt tgaattttcg ttacttgttg caagtcgtct
     4081 aaactgagtc ctttttcacg tctagcttgt ttcagtttat caccgagttc tgtcaaaatt
     4141 aaacacctac cattactaat ttcaaatttc cattttttta ctaaaattac ataagccaac
     4201 cgccatttaa gcgcaaaact tctccagtga tatagcttgc ttttttactt gtcaaaaatg
     4261 ctacaatttc tgcaatttct tctggttggg caaaacgatt taaagggatt tcttgacgaa
     4321 gaatttcttt ctcctcgtcc gaaaactgat ccatcatttt tgtttctaca acccctggtg
     4381 taactgcatt aactgttatt ccagaaagtc ccacctcttg acttagcgca cggcaaaagg
     4441 ctatttgcgc accttttaca gttgaatacg ctacttccat tgatgcacca acttctcccc
     4501 atatagaact aatgaaaata attcttcctt ggctactttt cattaatttg ggcataaaag
     4561 tgcgaattaa tcgcattggc atatacatat gcacattcca taattcagta atatttatat
     4621 ctgtagtatc ctggaataaa ccataatggg cgtgccctgc tgcatgaata aaggcatc
//
LOCUS       DASDXX010000191         4674 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.191, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000191 DASDXX010000000
VERSION     DASDXX010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4674
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.191"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(81..1448)
                     /locus_tag="U0280_002483"
     CDS             complement(81..1448)
                     /locus_tag="U0280_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HEM2272407.1"
                     /translation="MFDLMDNLLGVQSFGELNKDMPTTLFVTDADGNILISNKFTALT
                     VGMSLEELLRCNVRDLVEDGVYNDSVTLEAIRTKQKKTKVINTKKGFSIRSTSTPILY
                     PDGTVHLVVTMSDETQPDSFKTWRGEAISGNKESLLLEDYKENDGTVIVAESVAMKQI
                     VRVCNQIAPFDSKVLLYGESGTGKEVLSRYIHEKSEQAAGPFISINCAAIPKALFESE
                     LFGHEKGSFTGADIEKPGMLELADGGTLFLDEISEMPLELQAKMLRVLETGEVRRLGS
                     TTETKRRFRLISATNRNLGEMVEKGTFRRDLYYRINVVPVHIPALRERPQDIIGLARQ
                     FIQKFNQKYQKDFQLSGDKTKELLSHNWPGNVRELRNQIERLVVMSGNKEVTVAEIDD
                     FALDLHFKEQTKKDSLYLKDYLQDVEKHFILRVLEESNGNVTKAASVLGIHRSVLYRK
                     LKTLH"
     gene            complement(1554..2627)
                     /locus_tag="U0280_002484"
     CDS             complement(1554..2627)
                     /locus_tag="U0280_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEM2272408.1"
                     /translation="MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAG
                     LLGFALMIFGIPISNNVIVDLRHIPIIMVGFYGGPIPAIVSAVIITASRFLISVNSAA
                     MMAGVIMMLIGIITALFSKRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINM
                     FIFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMD
                     DGSRQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFS
                     IVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFK
                     SADEALYKAKLTGRNRVCIADEN"
     gene            complement(2806..3567)
                     /locus_tag="U0280_002485"
     CDS             complement(2806..3567)
                     /locus_tag="U0280_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2272409.1"
                     /translation="MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQ
                     KTVALIEKEQGTSLAVVANVTKQDDIESMINKATETYGTLDILVNNAGIMDNFVPAGE
                     LTDELWDKVFAINTTGVMRATRKALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASK
                     HAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDQFGQERAMIGMGTNPRA
                     GDASEIAKVALFLASDDASFVNGTVITADAGWTAY"
     gene            3751..4314
                     /locus_tag="U0280_002486"
     CDS             3751..4314
                     /locus_tag="U0280_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2272410.1"
                     /translation="MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTF
                     YKHYRDKEELLDSIIDEVLADLQKAYQDPYTHKTPFSIQTLTPSMIKIFDHVYGHQAF
                     YTQVIKSTIRPSFQNQVCDVIRELILNDFDYSADSSSIEPLLLASYQAHAIFGMIVFW
                     AEESFAHSPAFMSEQLLHIIQTKNPIL"
     gene            4420..>4674
                     /locus_tag="U0280_002487"
     CDS             4420..>4674
                     /locus_tag="U0280_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEM2272411.1"
                     /translation="MNDHRILNALSYFSILFAPVIVPVLIWIFAKSEDVTHHAKVALL
                     THIIPTIAGVLCFSSVFVTALTNGGLLANVSFFVTGSLFIF"
BASE COUNT         1395 a          992 c          718 g         1569 t
ORIGIN      
        1 aaaatgatgg tttttacaaa cagaagtcgc gaaaatgcaa caaaaaaggc ctaatcgcaa
       61 aatccgatta ggccttctat ttaatgaagt gtttttagtt ttcgatataa aacagagcgg
      121 tgaattccaa gcacactggc cgcttttgtc acgtttccat tactttcttc gagtactcgc
      181 aatataaaat gtttttccac gtcttgcaaa taatctttca aataaagtga gtcttttttt
      241 gtttgttctt taaaatgtaa gtctagtgcg aaatcatcta tttctgcaac agtcacttct
      301 ttatttccag acataacaac taatcgctca atctggtttc taagttcacg aacatttcct
      361 ggccaattat gagaaagtaa ttctttcgtt ttatcgccac ttaactgaaa atctttttgg
      421 tatttttgat tgaatttttg tatgaactga cgtgcaagac caataatatc ttgcggtcgc
      481 tctctgagtg ctggaatgtg aaccggcaca acattaatac gataatataa atcacgccta
      541 aatgttcctt tttcaaccat ttccccaagg tttcgattgg tcgctgaaat cagtctaaag
      601 cggcgtttcg tttcggttgt tgaaccaagc cttcttacct ctccagtttc aagcactcgg
      661 agcattttcg cttgtagctc tagtggcatt tcagaaattt catctaaaaa taatgtgcca
      721 ccatcagcta gttcaagcat cccgggtttt tcaatatccg caccggtaaa tgaacctttt
      781 tcatgtccaa aaagctcaga ttcaaataat gcttttggga ttgccgcaca gttaatcgag
      841 ataaaaggtc cagcagcttg ttcacttttt tcatgaatat agcgcgacaa gacttcttta
      901 ccagtaccgg actccccgta taataagact ttactgtcaa acggagcgat ctggttgcac
      961 acacgaacta tctgcttcat cgcgacgctc tctgctacta tcacagtgcc atcattttct
     1021 ttataatcct caagaagaag cgactcttta ttccccgaaa ttgcctcacc acgccatgtt
     1081 ttaaaactat ctggttgcgt ttcatctgac atagtaacaa ctaaatgcac cgtgccatca
     1141 ggataaagta ttggcgtaga agtcgagcgg atgctaaaac ctttcttcgt attgatcact
     1201 tttgttttct tttgttttgt gcggattgct tctagtgtga cagaatcatt gtatacaccg
     1261 tcttccacta ggtctcttac attacaacga agcaattctt cgagcgacat tccaactgtg
     1321 agcgcagtga atttattaga aattaaaata ttaccatctg catccgtgac aaaaagtgtc
     1381 gttggcatgt ccttatttaa ttcaccaaat gactgtactc ccagcaagtt atccattaag
     1441 tcaaacatta aaagctcatc cttttggact agtttcctag ttatttgctc atcattacac
     1501 aatctattat aacataagct atctcctaga agtactcgtt tttttgcgac aagctaattt
     1561 tcatctgcaa tacatactcg gtttcgcccg gttaattttg ctttatacag cgcttcatca
     1621 gcagatttaa ataatccttc acttgtatta gcaccatctt tactactgct aaccccaacg
     1681 gaaattgtaa ttttcactag ttttccactc ggtatcataa aatcgtgatc ttccgtttct
     1741 tttcgcactt gttcagcaaa aaaattacct ttttcaatcg gacaatctaa taagacaatg
     1801 gaaaattctt ccccgccgtt tctaaatgcc tcagaaccat ctgatgtgtt tcgttttaaa
     1861 ataatagcta attgtttcaa aatggcatca ccagcgtcat ggccgtatgt atcgttaata
     1921 tttttaaagt aatcaatatc gattaacatt aatgtcactt gcctacttcc atcgtccatt
     1981 acatggttga ttttttcatc aaattgcctt acatttgata accgcgtcag ataatcgagc
     2041 gtagagtctt gttcgtattt ttgaaacaat tgctttgatt taatcatatt cttcattaaa
     2101 cctgcggaaa cagcgccaat tacaagcgcg atcgatacaa atataaacat atttatccag
     2161 aagtctggct cttttgctaa aatcaaatgt aagttaacga ctacaaaacc acacgcaata
     2221 atattcaaaa taaaaacgcc ccaaatatta tatttttcta agcgtttgct gaaaagagct
     2281 gttataatgc caatcagcat catgattaca ccagccatca tcgctgcaga attcactgaa
     2341 attaaaaatc gtgaagctgt aataatgacc gccgaaacaa ttgccggaat gggcccgcca
     2401 taaaaaccca ccataataat agggatatga cgcaaatcaa caattacatt atttgaaatc
     2461 ggtatcccaa aaatcattag cgcaaatcct agtagccctg cccatacgcc tatcaccatt
     2521 tttctattta tcgataattc tttcgtaatt ggttctttat agactaaaga aataatataa
     2581 aatcctgcga gtaatatcgc tgcattactt accaactgtt gaaccaaaaa gcatccccgc
     2641 ctttcacttt gttatttaat accccattat gctcacaact attcattctc tctacacaaa
     2701 gaaacaaccc ctaaacgcga agttgttaaa aaatatccat ctttctattt tctcataaaa
     2761 aatccgcaaa agaaaataat tctctcatgc ggatttttta tatttttagt aagctgtcca
     2821 accagcgtct gctgtaatta ccgtcccgtt tacaaaacta gcatcatccg aagctaaaaa
     2881 tagagctact ttggcgattt cagaagcatc accagctcga ggatttgttc ccattccaat
     2941 catagctcgt tcttgcccaa attgatctgg agcataaata gtagtaccaa tatttgtatt
     3001 tacagctcca ggtgctatag cattacagcg aatattttta ttagcatact ggaaaccaac
     3061 attttttgta aaaccaacga cagcatgttt agaagctgta tacgctgccc ctgctcttga
     3121 accaaacaaa cctccagcag atgcgatatt aacgataaca ccttgtcctt tttcttcaaa
     3181 gatatgaagt gcttttctag ttgctcgcat tacaccagtt gtatttatcg caaacacttt
     3241 atcccaaagt tcatcagtta attcgccggc tggaacaaaa ttatccatga tgcccgcatt
     3301 gtttactaaa atatctaacg tgccgtatgt ctcagtagct ttgttaatca tgctttcaat
     3361 atcgtcttgt ttcgtgacat tcgcaacaac cgcaagtgat gtaccttgtt ctttttcaat
     3421 taacgctact gttttttgtg ccgcttctaa atttaaatcc gcaacaacaa ccttcgcccc
     3481 ttctttcgca aaaagaatcg caatttgttg ccccattcca gacgctgcac cagttactac
     3541 ggctactttt ccatttaatt tccccattgt tatttcctcc ttcacttttg ttacgctaaa
     3601 aaggataaaa tttctctcct tcttatttta attatagctc cgatataaag cgctatcaat
     3661 atgtaaagaa agcctgtttt gttgattaag caacactttt gcgttatatg tatagtagta
     3721 ggaaattttc tcggatggga gtttcaaatg atggatagaa ggattaaaaa aacaaaacaa
     3781 gccttaaacc aagctttatt tactcttctt gatgaaaaaa cttttcaaca gattacgatt
     3841 acggatattg ttacagtagc agatgttaat cgaggcacgt tctataaaca ttaccgtgac
     3901 aaagaagaac ttttagatag tattattgat gaagtgctgg ctgatttaca aaaagcgtat
     3961 caagaccctt atacacataa gacgcctttt tccattcaaa cacttacacc ttccatgata
     4021 aaaatttttg atcatgtata cggtcatcaa gctttttata cacaagttat aaaatcgaca
     4081 atccgtccca gttttcaaaa tcaagtttgt gacgttattc gggaactgat tttaaatgac
     4141 tttgattatt cagctgacag ttcgagtata gagcccttgt tacttgcatc ttatcaagca
     4201 catgcgattt tcggcatgat tgttttttgg gcagaagaaa gttttgctca ttcaccggcg
     4261 tttatgtcag agcaacttct tcatattatt cagactaaaa atccaatctt ataattctta
     4321 catatttgtt atattatttt ccttctttgt aacttgaaac gagggcttca taatcctagt
     4381 cttgctataa taaagacatc ttagaaaggt gtgttgatta tgaatgatca tcgtatttta
     4441 aatgctttaa gttattttag tatcctattt gcacctgtta ttgtgccagt attgatttgg
     4501 atttttgcta aatcagagga tgttactcat catgctaaag ttgcattact aactcacatt
     4561 attccgacta tcgctggtgt tctatgtttc tccagtgttt tcgttacagc tttgacaaat
     4621 ggcggcttac tcgcaaatgt atcatttttc gttaccggta gcttatttat attt
//
LOCUS       DASDXX010000192         4665 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.192, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000192 DASDXX010000000
VERSION     DASDXX010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4665
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.192"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            12..584
                     /locus_tag="U0280_002488"
     CDS             12..584
                     /locus_tag="U0280_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272412.1"
                     /translation="MLKLYKKEQNQILYAKYWINNDKAIVHFGKIGKVGQKEETSNYL
                     EKYKSKAAFHEAFINRFVPQSYSENPPNENFWILIQYPLKSLTRTKRDIWLKDRVTDV
                     LNDDLGWKGLGIVDGFDIGQTANPNKQFALNIFCVVVDEEIGIKVIKSALRNNNCDYT
                     RVKIASRPFSDDAEYALNFSAKKKDVTFYV"
     gene            complement(658..729)
                     /locus_tag="U0280_002489"
     tRNA            complement(658..729)
                     /locus_tag="U0280_002489"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(694..696),aa:Arg,seq:cct)
     gene            complement(858..1850)
                     /locus_tag="U0280_002490"
     CDS             complement(858..1850)
                     /locus_tag="U0280_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEM2272413.1"
                     /translation="MFGTTTIGIDLGTANILVYSKEKGIILNEPSVVALNTNDGTVLA
                     IGQEAKEMIGKTPTSISAVRPMKDGVIADFDLTSGLLREIMRRISVSGVRKPNVVVCT
                     PTGATSVERRAISDAVRSTGARSVVLIEEPVAAAIGADLPVAEPVANVIVDIGGGTSE
                     IAIISYGGVVSSTSIRTGGDHMDEEIIQYIRKNYNLLIGQTTAERIKMELGYAPIEHV
                     TQTADIRGRDLLTGLPKTIQVSSTEIQSALAETLQRILEAIRNTLELCPPELSGDIVD
                     RGIILSGGGSLLQGFRDWLVQEIDVPVHMAPSPLESVAIGTGRSLVFADKLAKN"
     gene            complement(2068..3327)
                     /locus_tag="U0280_002491"
     CDS             complement(2068..3327)
                     /locus_tag="U0280_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272414.1"
                     /translation="MKFSTWDINLKVRLFGEALLDISFWMVFPFLTIYFSESIGRELT
                     SLLLIISQVLAVFTALLGGYFADNFGRKRMMSISVIGEGFGFLVFAIGALHVVDSPYL
                     SFAGFAIASVFMAFYQPASQAMIADVVPPEHRTHIYSVFYMMINIAVVIGPILGSVLF
                     YNFTTETLLAIVCADLLLLFLLQKFGHETAPLLVNPDLQKEAVRKSIGAVLMEQLKNY
                     KIIFKDKIFFLYIVAGIIVSQSFMQLDLLFPLYIKEVIGASNLFVFHFTGEQLFGVIV
                     SINGFFVAALTVVVTRWMSHFREKFVFMNSSFLYAIAIFLFGISTGPWGAICAIILFS
                     FAELMTVGLQQTFVSQLAPEDKRAMYFSAAGLRYTLGKVIAPLAITLSTLIGYTGTFT
                     IIGILALISGLIYYYMYSEFEKQRQVS"
     gene            complement(3431..4663)
                     /locus_tag="U0280_002492"
     CDS             complement(3431..4663)
                     /locus_tag="U0280_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEM2272415.1"
                     /translation="MTVFSEKLEKYAELIVKVGVNVQPEQKVVIMAPVDAAPLVRLIS
                     KYAFEVGAEDVIMDWRDEELGALRYKNAPLRVFESAPVHRVAEKTELAKEGACFISIT
                     SEDPDLLNGVDSNKIATFQKTMGGAMSEFRELMQANVVSWTVVAAASQGWAAKVFPDL
                     TPAEQMETLWEAIFETTRINTENPVETWKNHDQTLAAKAESLNEKQFTSLHYTAPGTD
                     LTIGLPKNHLWVGAGSKNKKGHEFMANMPTEEVFCCADKLKVEGYVSSTKPLSYAGNI
                     IDDFKITFEKGRIVGVEAASGEEILKDLIATDEGSHYLGEVALVPDPSPISQSGILFY
                     NTLFDENASNHLAIGSAYAFNVKGGEEMSREELEAAGVNNSLTHVDFMIGSSEMDIDG
                     VTESGEVVPVFRKGDWAF"
BASE COUNT         1558 a          962 c          854 g         1291 t
ORIGIN      
        1 gaggtgaaaa catgttaaag ctatacaaaa aagaacaaaa tcaaatcttg tatgctaagt
       61 actggataaa taatgataag gcaattgtgc acttcggtaa aattggtaaa gtaggacaga
      121 aagaagaaac cagcaactat ctggaaaaat acaagagcaa agctgcgttc catgaggcgt
      181 ttattaatcg atttgtccca caaagttata gcgaaaatcc tccaaatgaa aatttctgga
      241 tattaattca atatccgctc aaaagtttaa caagaacaaa acgtgatatt tggctgaaag
      301 atcgagtaac agatgtttta aatgacgatt tggggtggaa aggtttaggg attgtagatg
      361 gttttgacat aggtcaaacc gcgaatccta acaagcaatt tgctttaaat atattttgtg
      421 tcgttgttga tgaagaaata ggtattaaag tgattaaatc agctctaaga aataataatt
      481 gtgattatac tagagtaaaa attgcttcca gaccattttc ggatgatgct gaatatgcgt
      541 tgaatttttc agcgaagaaa aaggatgtaa ctttttatgt atgaataaag ttttgaaata
      601 agaacgataa aaaatccgaa agtcttgatt tatcaagtgc tttcggattt ttctgagcgc
      661 ccatacgcgg aatcgaacca cgaactagcc cttaggaggg gcttgttata tccgtttaac
      721 tatatgggct tattataaaa ttatctgact ccagaaagcc agacaccaga aataagttta
      781 ccagaaataa ggggtttcag caagataaag aagcatctgg ctgcaagggt taccatgcga
      841 ccagatgctt actgcaatta atttttagct aatttatctg caaaaacgag ggatctacct
      901 gtgccaattg caacggattc caaaggactt ggagccatat gtacagggac atctatttct
      961 tgtacaagcc agtcgcggaa accttgaagt agggagccac caccacttaa aataatgccg
     1021 cgatcgacaa tatcaccact taattctggg gggcaaagtt caagcgtatt ccgaatagct
     1081 tctaatatac gttgtaatgt ttcagctaaa gcgctttgga tttccgtaga gcttacttgg
     1141 attgtttttg gtaagccagt aagcaaatcg cgaccacgga tatccgcagt ttgtgttacg
     1201 tgttcgatcg gcgcataacc aagctccatt ttaattcgtt ctgctgttgt ttgaccgatt
     1261 aaaaggttgt aatttttgcg gatgtattga atgatttctt catccatatg atcgccacct
     1321 gtgcgaatcg aagtgcttga aaccacaccg ccgtatgaaa taatcgcaat ctcacttgtg
     1381 ccgccaccaa tatctacaat tacgttagcg acaggctcag cgacaggtaa atcagcacca
     1441 attgcagctg caacaggttc ttcaattaaa acgactgaac gagcaccagt tgatcttacc
     1501 gcgtctgaaa tagcgcgacg ctcgactgac gttgcaccag ttggggtaca aacgaccaca
     1561 ttgggctttc tcacaccact aactgaaatc cggcgcataa tctcgcgcaa aagtccgctc
     1621 gttaaatcaa aatcagcaat aacaccgtcc ttcattggtc ttacagcaga aatcgaagtc
     1681 ggcgttttac caatcatctc ttttgcttcc tggccaatcg caagtaccgt tccatcattc
     1741 gtatttagcg cgaccacaga aggttcattc agtataatgc ctttttcttt actgtaaact
     1801 aaaatattcg cagtacctaa atcaattcca atagttgttg ttccaaacat tctcacacct
     1861 aactttctat taaaaatagc gagtaaattc taggtgtaca actaacagta tagacttttt
     1921 tcaccatata agcattattt aaacatggat gaaatgaaaa ggtaatttaa aatggcgata
     1981 tgacaggtat tttcggtgtt tcgtaaataa atcgtaaaaa aagtaatcaa acaaaaacga
     2041 ctatccagag tagatagccg ttttttatta ggaaacttgc cgctgttttt caaattctga
     2101 atacatatag taataaatga gcccgctaat gagcgctaaa ataccaataa tagtaaatgt
     2161 cccagtatag ccaattaaag tcgaaagtgt aatcgcaagt ggagcaatga ctttacccag
     2221 cgtataacga agtccagcag cagagaagta catcgcccgt ttatcctctg gagctaactg
     2281 tgaaacaaag gtttgttgca agccaacagt catcagttcc gcgaagctaa agagaataat
     2341 ggcacaaatc gctccccacg gtcctgtcga aataccaaat aagaaaatcg caatcgcata
     2401 gagaaaagaa gaattcataa agacaaattt ttctctaaaa tggctcatcc agcgagtgac
     2461 aacgacagta agcgctgcaa caaagaagcc attaatagaa acaataaccc cgaacaattg
     2521 ctcacctgta aaatgaaaca cgaacaagtt agaggcgccg ataacttctt taatatatag
     2581 tgggaaaagt aaatccagtt gcataaacga ctgagaaaca ataatcccgg caacaatata
     2641 aagaaagaaa atcttgtctt taaaaataat cttatagttt tttagctgtt ccattaaaac
     2701 agcaccaata ctttttcgaa ccgcttcttt ttgtaaatca ggattaacta aaagaggggc
     2761 tgtttcgtga ccaaattttt gcaataaaaa tagtaataat aaatccgcac aaacaattgc
     2821 aagtagtgtt tctgtcgtga aattataaaa taaaaccgaa ccaagaatgg ggccaataac
     2881 gaccgcaata ttaatcatca tatagaacac cgaataaata tgcgtccgat gctcaggagg
     2941 aaccacatcg gcaatcatcg cttgacttgc tggctgataa aacgccataa aaacactcgc
     3001 aatcgcgaaa ccagcaaaac tcaagtaagg agaatccaca acatgaagtg cacctattgc
     3061 aaaaacaaga aaaccaaaac cttctccaat gacagaaata ctcatcatcc gtttacgacc
     3121 aaagttatcc gcaaaataac cgccaagcaa agctgtgaaa accgccaaaa cttgcgaaat
     3181 aatcagcaaa aggctcgtca gctcgcgccc aatactttcc gaaaagtaaa tcgttagaaa
     3241 ggggaagacc atccaaaaag aaatatcgag tagtgcttcc ccaaaaagcc ttacttttaa
     3301 attgatgtcc catgtactaa atttcatcca atgcacctcg ctctcttttg taaaaaataa
     3361 acaaacgaaa acccttgaaa gccaaaagct acaagggttt tacgcaaaag gcataagttt
     3421 taaaaaagga ttagaacgcc cagtcgcctt tacggaaaac aggaacaact tcaccagatt
     3481 cggttacacc atcaatgtcc atttcagaag aaccaatcat gaaatcaacg tgtgttaaac
     3541 tattgttcac accagctgct tctaactctt cacgagacat ttcttcgcca cctttaacat
     3601 taaatgcata cgcactacca attgctaagt ggttagaagc attctcatca aatagtgtat
     3661 tgtagaataa aatgccggat tgggaaatag gggaagggtc tggaactaga gccacttcac
     3721 ctaaatagtg ggagccttca tcagtcgcga ttaaatcttt caaaatttct tcgccggatg
     3781 ctgcttctac acctacaata cgaccttttt cgaaagtgat tttgaagtca tcgataatat
     3841 ttcctgcata actaagtggt ttcgtactag aaacataacc ttccactttt agtttatccg
     3901 cacaacagaa tacttcttct gttggcatat tggccataaa ttcatgtcct tttttattct
     3961 tactgccagc gccaacccaa agatggtttt ttggaagacc aattgtaagg tctgttccag
     4021 gagccgtata atgtaaagaa gtaaattgtt tttcatttaa actttctgct tttgcagcaa
     4081 gtgtttgatc gtgatttttc caagtttcta ccgggttttc tgtattgata cgagttgttt
     4141 caaaaatagc ttcccaaagt gtttccattt gttctgctgg agttaaatct gggaatactt
     4201 ttgctgccca cccttgtgaa gctgctgcaa caactgtcca acttacaaca tttgcttgca
     4261 ttaactcgcg aaactcgctc attgcaccac ccattgtttt ctggaatgtc gcaattttgt
     4321 tgctatccac gccgtttagt aaatccggat cttcggaagt gatggagata aaacaagcgc
     4381 cttctttggc aagttctgtt ttttctgcaa cacggtgaac cggagcactt tcaaaaacgc
     4441 gtagtggagc atttttgtaa cgtaatgcgc ctaattcttc atcgcgccaa tccataatga
     4501 catcctctgc accaacttca aaagcatatt tggaaataag gcgaacaagt ggagccgcgt
     4561 caactggagc cataattacc actttctgtt caggttggac atttacccca acttttacaa
     4621 tcaattctgc atacttttct aacttttcac taaatactgt cataa
//
LOCUS       DASDXX010000193         4464 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.193, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000193 DASDXX010000000
VERSION     DASDXX010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.193"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            337..2142
                     /gene="glmS"
                     /locus_tag="U0280_002493"
     CDS             337..2142
                     /gene="glmS"
                     /locus_tag="U0280_002493"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEM2272416.1"
                     /translation="MCGIVGYIGTNNAKGILLEGLEKLEYRGYDSAGIALQNKDLVTV
                     VKEKGRIADLASLVPSDAFGTTGIGHTRWATHGKPNHENAHPHQSKSGRFTMVHNGVI
                     ENYTLLKEEYLKNHSFVSDTDTEVIVQLIELFAAELSTKEAFKKALSLLHGSYAICLI
                     DQTDTETLYAAKNKSPLLIGKGENFNVIASDAMAVLKETDEFVEIMDKEIVIVTKDGF
                     TLETLEGEEISRASYTAELDASDIEKGTYPHYMLKEIDEQPAVTRKIIQAYQNEAGEI
                     NVDQTILDEILSSDRIHIVACGTSYHAGLVGKNLIEKMVKIPVEVHVSSEFGYNLPLM
                     SKKPLFIFITQSGETADSRQCLVKVKELGYRTLTLTNVPGSTLDREADHSMYLYAGPE
                     IAVASTKAYTAQISVLAVLAVSLGREIGDAEALSINLAAELGIVATAMEAMVSSKEVI
                     EHIAGEYLATSRNAFFLGRNIDYFVAMEAALKLKEISYIQAEGFASGELKHGTIALIE
                     DGTPVLALITQESINWNIRGNVNEVLARGAKTCVFAMENVAQPGDRFVIPQVHPLLTP
                     LASVIPCQLLAYYAALHRDCDVDKPRNLAKSVTVE"
     gene            2255..2995
                     /locus_tag="U0280_002494"
     CDS             2255..2995
                     /locus_tag="U0280_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272417.1"
                     /translation="MEVSHVTLEPNKDSRPAVLTIGKFDGVHIGHQTILNTALSIKKE
                     NEILTAISFSPHPLWALKQIEIYREMLTPRMEKERWLAHYGVDHLIETAFTPRYAETT
                     PEEFVRDHLTNLNLSHIVVGSEFNFGKGRDSDVDLLRDLCKPYDIGVTSVPVIETNQT
                     KISSTNIRAFIRRGHFQEAEELLGHPWYITGIVENGEMTGLDDYVLPATGTYQTDSGI
                     VNVTNNRTIEVGLSDGLQQLHMKNELSE"
     gene            3078..3557
                     /locus_tag="U0280_002495"
     CDS             3078..3557
                     /locus_tag="U0280_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272418.1"
                     /translation="MKIPTTLKHKPVIVVENYEEVDGKNAYHSDAKGLSLGLAQWNDR
                     GKVDISAKVWRHTGDKWSRQSEELPLHRVLDLAILIARTKVHFKDAYRLPHFYDKENP
                     MLDRIGLQGDALTIAVCEDNEYIDEDMQLFEQVLKNDDELLSERLKTLSKLLQEAGY"
     gene            3571..3909
                     /locus_tag="U0280_002496"
     CDS             3571..3909
                     /locus_tag="U0280_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM2272419.1"
                     /translation="MNKDNRKELIRAYKEKSPDAGVYRFISTKSGKSLIDNTMDLKGI
                     ANKLAFGVKIGAGNMLPPEMAKEAKEYGIDTIQFEILEKVDIKPEMTKEDIKEENDVL
                     LSLWLEREDI"
     gene            4054..4458
                     /locus_tag="U0280_002497"
     CDS             4054..4458
                     /locus_tag="U0280_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2272420.1"
                     /translation="MNPRKSEFVLTLIAGITGIIAGITGIAGGGLLAALSGSEELSNA
                     TAMTAADSEALAAAGGLTVIFSIIALVLGIALIVFAVLIKRNAKVFGILTLVAGVVGF
                     FLVGLLWIVPGVLAVIAGIMCLARKVPTDTFS"
BASE COUNT         1511 a          797 c          912 g         1244 t
ORIGIN      
        1 acatattatt gtaaaatgaa tttgtttcct tgaaaagtag tgaaggagga tcgtacaatt
       61 aaatagaagc gccagaactg attggaacga aaatacttga aggtgaaatc cctgaaaagt
      121 aaacagtcag ttgacgagga ggagattaat cgaagtttcg gcgggagtct cccggctgtg
      181 catgcagtcg ttaagtctta cttacaaatc acttgggtga ccaagtggac agagtagtaa
      241 tgaaacatgt tttttaccct ccaaggaaac caaaaaatgt agagggcttg aaattggata
      301 agtctgccct caagtttatt attggaggaa tttactatgt gtggaatcgt tggatatatt
      361 ggaacaaata atgcaaaagg cattttatta gaaggacttg aaaaattaga ataccgcggc
      421 tatgactctg cgggaatcgc tttgcaaaac aaagacctag taacagtagt taaagaaaaa
      481 ggacggattg cagaccttgc gagccttgta ccaagtgatg cattcggtac aacaggaatc
      541 ggacatacac gctgggcaac gcacggtaaa ccaaatcacg aaaacgccca cccgcaccaa
      601 agcaaatctg gtcgttttac aatggttcat aacggcgtaa tcgaaaacta taccctttta
      661 aaagaagaat acttaaaaaa tcattcattt gttagtgata cggatacaga agtaatcgtt
      721 cagcttattg aactctttgc agcagaactt tcgactaaag aagcattcaa aaaagcgtta
      781 tcgttacttc atggttctta cgcgatctgc ttaattgacc aaaccgatac agaaacacta
      841 tacgcagcaa aaaacaaaag cccattacta atcggaaaag gcgaaaactt caacgttatt
      901 gcaagtgatg caatggctgt tcttaaagaa acagatgaat tcgtggaaat tatggataaa
      961 gaaatcgtta tcgttacaaa agacggtttt acattagaaa cattagaagg ggaagaaatt
     1021 agccgcgcga gctacactgc tgaattagat gcatctgaca tcgaaaaagg cacatacccg
     1081 cattatatgt taaaagaaat cgatgaacaa ccagcagtaa cacgtaaaat catccaagct
     1141 taccaaaatg aagctgggga aatcaatgtc gatcaaacaa ttcttgatga aattttatct
     1201 tctgaccgta ttcatattgt cgcttgtggc acgagctatc atgctggttt agtcggaaaa
     1261 aatttaatcg aaaaaatggt gaaaattcct gtagaagtac atgtttctag tgaatttggc
     1321 tataatttac cgctaatgtc taaaaagccg ttattcattt tcattaccca aagtggggaa
     1381 acagctgata gccgccaatg tcttgtaaaa gtgaaagaac ttggttaccg gacgctgaca
     1441 ttaacgaacg taccaggctc tacgcttgac cgtgaagcgg atcattcgat gtatctctat
     1501 gctggacctg aaattgcggt tgcatcaaca aaagcatata ccgcacagat ttcggtttta
     1561 gcagtacttg cagtttcact tggtcgcgaa attggtgatg ctgaagcgct tagcattaat
     1621 ttagctgctg aattaggtat cgttgcaact gcaatggaag caatggtttc tagtaaagaa
     1681 gttatcgaac atattgcggg cgaatactta gcgacttctc gtaacgcctt cttcttaggt
     1741 agaaacatcg attatttcgt agcgatggaa gcagcactta aactaaaaga aatttcatat
     1801 attcaagcag aaggttttgc aagtggggaa ttaaaacatg gtactattgc gcttattgaa
     1861 gacggcacac cagttttagc gcttatcacg caagaatcta tcaactggaa tattcgcgga
     1921 aatgtaaatg aagtcttagc gcgtggagca aaaacttgtg tatttgcaat ggaaaacgtt
     1981 gcgcaaccag gtgaccgctt tgttattccg caagtgcatc cattattaac accactagcg
     2041 agcgttatcc cttgtcaatt attagcttat tacgcagcac ttcaccgtga ctgtgatgtc
     2101 gataaaccaa gaaacttagc aaaaagtgtc acagtagaat aaagtattca agaccttttc
     2161 gaaattagaa aaggtctttt tttatgtaat caataaattt gcacgacgcc cttgttatac
     2221 tataaactta gagaggaatg ggggaaatca gccaatggaa gtatcacacg taacactcga
     2281 accaaataaa gatagccgcc ccgcagtttt aacaatcggc aaattcgacg gggtacatat
     2341 cggccatcag accattttaa atacagcctt atccataaaa aaagaaaatg aaatattaac
     2401 cgctattagt ttcagtccac atccgctttg ggctttaaaa caaatcgaaa tataccgcga
     2461 aatgctcaca ccaagaatgg aaaaagaacg ttggctcgcg cattacggtg tcgatcattt
     2521 aatcgaaaca gcattcacac ctcggtatgc ggaaacgaca ccagaagagt ttgtcagaga
     2581 ccatttaacc aatttgaatt tatcgcatat cgtcgttggt tctgaattta attttgggaa
     2641 agggcgcgat tctgacgtag atttactccg ggacctatgc aagccctatg atattggtgt
     2701 cacatctgtc ccggttattg aaacaaatca aaccaaaata agttccacca acattcgagc
     2761 gtttattcgg cgcggtcatt ttcaagaagc ggaagagctc ttaggccatc cgtggtatat
     2821 tactggaatt gtagaaaatg gtgagatgac tggcttagat gattacgttc tcccggcaac
     2881 aggtacgtat caaacagact caggaatagt gaatgtaacg aacaatcgta ccatcgaagt
     2941 cggattgtca gatggacttc aacaattaca tatgaaaaac gaactttccg agtaattagg
     3001 aaagtttttc tttacatttt ataaaattag taatatacta atttagtaaa ttactaaaaa
     3061 ttaaaaggag aaatcttatg aagattccaa ctaccttaaa acataaacca gtaatcgttg
     3121 ttgaaaatta tgaagaagta gatggcaaga acgcttacca ttctgatgcg aaaggacttt
     3181 cgctcggact tgcacagtgg aatgatcggg gtaaagtaga tatttcagcc aaagtatggc
     3241 gtcatactgg tgataaatgg tcacgccaat ccgaagaact tccgctacac cgtgtgcttg
     3301 atttggccat tttaattgct agaaccaaag tccatttcaa agatgcttac cgcttacctc
     3361 atttttatga caaagaaaat cctatgcttg atcgcatcgg tttgcaagga gatgcgctga
     3421 ctattgctgt ttgtgaagat aacgaatata tcgatgagga catgcaattg ttcgaacaag
     3481 ttttaaaaaa tgatgatgaa ctcctcagcg aacgcctcaa aacattaagc aaactattac
     3541 aagaagcagg ttattaagga cgtgaaataa ttgaataaag acaatcgtaa agaactaatt
     3601 cgtgcatata aagaaaaatc tcccgatgcc ggcgtttacc gttttatcag tacaaaaagt
     3661 ggtaaatcct taattgataa cacaatggat ttaaaaggaa tcgccaataa acttgctttc
     3721 ggagtgaaaa ttggagcggg aaatatgcta ccaccagaaa tggcaaaaga agcaaaggaa
     3781 tatggtattg acaccattca atttgaaatt cttgaaaaag tagatattaa gcccgaaatg
     3841 acaaaagaag atattaaaga agaaaatgat gtactcctta gtttatggct agaacgtgaa
     3901 gatatctgag acctttcact tgaaaggtct ttttttatta aaattgtaca ataaaaagat
     3961 aattgcaata aaatacacga aatgtctaca ttttctagca aaattaatgt tatactaata
     4021 aatgactatt ttaaaaggga ggtttatatc ataatgaatc caagaaaatc agaatttgtt
     4081 ctaacattaa ttgcgggaat tacaggtatt attgctggta ttactggaat cgcgggcgga
     4141 ggtttacttg ctgctctttc tggcagtgaa gaattatcta acgcaactgc gatgactgct
     4201 gctgactctg aagcacttgc tgctgcaggt ggtttaacag taattttctc tataattgct
     4261 ttagtgcttg gtattgcttt gattgttttt gctgtattaa ttaaacgcaa tgctaaagta
     4321 ttcggtatct tgacgctagt agctggtgtt gtaggtttct tcttagtagg attactatgg
     4381 atcgttccag gtgtacttgc tgttattgca ggtattatgt gcctagcgag aaaagtacca
     4441 actgacacat ttagctaatc ttaa
//
LOCUS       DASDXX010000194         4427 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.194, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000194 DASDXX010000000
VERSION     DASDXX010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4427
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.194"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..524)
                     /locus_tag="U0280_002498"
     CDS             complement(<1..524)
                     /locus_tag="U0280_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEM2272421.1"
                     /translation="MVKELEIEFRNLLTKEEYDTLIESFRVKEEDFFEQTNYYLDTAN
                     FGLKERHSALRIRQLETQYQLTLKTPEARGLMETTQILGEDQASAIISGANIPVGPVR
                     DTLKELGINHEDLQVFGSLKTIRAEKDYKKGLLVFDKNFYGSISDFDLEYEVSDYDKG
                     KEVFDKLLKEYQIT"
     gene            complement(541..1008)
                     /locus_tag="U0280_002499"
     CDS             complement(541..1008)
                     /locus_tag="U0280_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2272422.1"
                     /translation="MILTLLQNGDYETARTQALAELKNNSDNAELHYYAAWAHDALGK
                     EDAAIPFYEKAIQLGLPVDSRKEAYIGLGSTYRITGQPEKASLLFQTALQEFPDNNAL
                     RTFSVMAKYNQGLEKEALQEALILLTQTTSDADILSYKKAIQFYAQDLDATFH"
     gene            1167..1835
                     /locus_tag="U0280_002500"
     CDS             1167..1835
                     /locus_tag="U0280_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM2272423.1"
                     /translation="MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGR
                     VKPVASILDKANQKHIALDHLVEEMQDIAGLRMMCQFVDDIEVVVRLLRQRNDFRIVE
                     ERDYITNKKPSGYRSYHVVIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKY
                     QGEFPEAINKRLKRAAEAAFQLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMP
                     KKNK"
     gene            1867..2661
                     /locus_tag="U0280_002501"
     CDS             1867..2661
                     /locus_tag="U0280_002501"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM2272424.1"
                     /translation="MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGG
                     DGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEANKLVKLVAKGEYQKVSYPL
                     LKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT
                     TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQ
                     ISVDHLSILHRDVQEIRYEVSAKKIHFARFKSFPFWRRVHDSFIED"
     gene            2680..3570
                     /locus_tag="U0280_002502"
     CDS             2680..3570
                     /locus_tag="U0280_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM2272425.1"
                     /translation="MFLEWKVETEEDGLLLRTFLKSKHISKQLLTAVKFGAEGKIEVN
                     NKEQNVLYHVKVGDKVRLTFPTEQQNERLLAEYTDLDIIFEDDFLLIINKPAGMASIP
                     SQYHPNGSVANFVKGHYETQGLTNAIHIVTRLDRETSGLMLIAKNRFAHARLSTFLQK
                     GLLKRRYQAFTSGVLVEQKGSIEAPIGRKEVSIMERFVTPEGKYAKTNYEVLARYRAF
                     DHVAIQLETGRTHQIRVHFSYIGHPLIGDDMYGGDTNLLKRQALHSCHLHLVHPLTEK
                     YMAFDLPLPADMEEIIQKSK"
     gene            3648..>4427
                     /gene="fabI"
                     /locus_tag="U0280_002503"
     CDS             3648..>4427
                     /gene="fabI"
                     /locus_tag="U0280_002503"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEM2272426.1"
                     /translation="MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDR
                     AKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKTGKLSGLAHCIAFANK
                     DFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVE
                     NYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEE
                     RAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHII"
BASE COUNT         1413 a          724 c          936 g         1354 t
ORIGIN      
        1 ttggtgattt gatattcttt aagtagtttg tcaaaaacct cttttccttt atcataatca
       61 gacacttcat actctaagtc gaaatctgat atagaaccat aaaaattctt atcaaacaca
      121 agtaagcctt ttttataatc tttttctgcg cgaattgttt tgagtgaacc gaaaacctgt
      181 aagtcttcat gattgattcc tagttctttt aacgtgtcac gaactggtcc aactggaata
      241 tttgctccag agatgatggc acttgcttgg tcctcgccaa gaatttgagt agtttccatc
      301 agtccacgtg cttctggggt tttgagtgtt aattggtact gtgtttctaa ttgtcgaatt
      361 cgaagagcgg aatgacgttc ttttaacccg aaatttgctg tgtctaaata ataatttgtt
      421 tgctcaaaga aatcttcttc tttcactcga aaactttcta ttaatgtatc gtattcttct
      481 ttggttagta ggttacgaaa ttcgatttct agttctttga ccatgatagt tcagctccct
      541 ttaatgaaat gtcgcatcta aatcttgcgc ataaaattga attgctttct tgtaacttaa
      601 aatgtctgca tcactcgttg tttgtgtcaa gagtattaag gcttcctgca aagcttcttt
      661 ttctaagcct tgattgtatt tagccataac tgaaaaagtg cgcaaggcat tattatctgg
      721 aaattcttgt aaagcggttt ggaaaagcag gctagctttt tcgggctgcc ctgtaatccg
      781 gtaagtacta ccaaggccta tatatgcttc tttacgagaa tcaactggaa gaccgagctg
      841 tatggctttc tcataaaagg ggattgcagc atcttcttta ccgagtgcgt catgggccca
      901 tgctgcataa taatgaagtt ctgcgttatc ggagttgttt tttaattcag caagtgcttg
      961 agtgcgcgca gtttcgtaat cgccgttttg aagtaatgtt agaatcattt tcatcctcct
     1021 tttagttgtc gtttgaatgc ttcggtttta ttttaccacg ggattgaaaa aaaggttact
     1081 ttaagcaagg tggattaact gcttttgtgt taaaataaaa ctgatgttgc ataaatttaa
     1141 tcatgaatat acttgaggtg agcgatttga atcattggga agacttttta gcgccataca
     1201 aacaggctgt ggaagaactt aaaattaaac ttaaaggaat gcgttcacaa tttgagcttg
     1261 aaaataatca ttcgccaatt gaatttgtta caggccgagt gaagccggtt gcgagcatat
     1321 tagataaggc caatcaaaag catattgcac tagatcactt agtagaagaa atgcaggata
     1381 ttgcgggact ccgtatgatg tgccaatttg tagatgatat tgaagtagta gtgcgccttt
     1441 taagacagcg gaatgatttt cgaattgtag aagaacgcga ttatattaca aacaagaaac
     1501 ccagtggtta ccgctcctat cacgttgtta ttgagtaccc agtggaaaca attcaaggag
     1561 aaaagaaaat cttagctgaa atccaaatta ggacacttgc aatgaatttt tgggcaacga
     1621 ttgagcattc ggtaaactac aagtatcaag gcgaatttcc agaagcaatc aataaacgtt
     1681 taaagcgcgc tgctgaggct gcttttcaac tagatgagga aatgtcgcaa attcgcgaag
     1741 aaatacaaga agcgcaagtt tatttttctc aaaataaaga cgtatcaaag gataaaaaag
     1801 cagtgcatca agtaatgcca aagaaaaata agtaattagt tgtaggaata ggggcgaata
     1861 gaaataatga aatatatgat tacttccaaa ggggacgaaa aatccgattt gctgcgacta
     1921 aatatgatcg caggttttgg ggaatatgac atggaatatg atgacgtaga gcctgaaatt
     1981 gttatttcta ttggtggaga tggaacgttt ctgtctgctt ttcatcaata cgaggaacgc
     2041 ttggatgaaa ttgcctttat agggattcat actggtcatc taggctttta tgcggattgg
     2101 agaccagctg aggcaaataa attagttaag cttgtagcaa aaggagaata tcagaaagtt
     2161 tcctatcctc ttctcaaaac aaccgtgaaa tatgggattg gcaaaaaaga agcaacatat
     2221 ttagcgctta atgaatcaac tgtaaaaagt tcaggaggcc cttttgtagt agatgttgtg
     2281 attaacgata ttcattttga acgatttcgt ggagatggcc tttgtatgtc aacacctagt
     2341 ggaacaacgg cttacaataa atcgctaggt ggggcactta tgcatccttc tattgaagca
     2401 atgcagttaa cagagatggc atcgattaat aatcgagtgt accggacaat cggtagccca
     2461 ctagtttttc cgaaacatca tgttgttagt ttacaaccgg ttaatgacaa ggactttcaa
     2521 atttctgtag atcatttgag cattttgcac cgggatgtac aagaaattcg gtatgaagta
     2581 tctgcaaaaa aaattcactt tgccagattt aaatcatttc cattttggcg tcgtgtacac
     2641 gattcgttta ttgaagatta agctagcagg agggagcatg tgtttttaga atggaaagtc
     2701 gaaacggaag aagatggact cttacttcgc acgtttttga agagtaaaca tatttcgaaa
     2761 caattattaa ctgccgtgaa atttggggca gaggggaaaa ttgaagtaaa taacaaagaa
     2821 caaaatgttt tgtatcacgt aaaagtaggc gataaagtga ggcttacttt tccaacagag
     2881 caacaaaatg aacgattgct tgcggaatat accgatttag atattatttt tgaagatgat
     2941 tttttattaa ttatcaataa accagctggt atggcttcta ttccatcaca atatcatcca
     3001 aatggatccg ttgcaaattt tgtcaaaggg cattatgaaa cgcaaggact gacgaatgct
     3061 attcatattg taacaagact cgatcgtgag acgtctgggt taatgttaat cgccaaaaat
     3121 agatttgctc atgctagatt aagtacgttt ttgcaaaaag gattactaaa acggcgctat
     3181 caagcattta catcaggagt tttagtagaa caaaagggtt cgattgaagc gccaatagga
     3241 cgcaaagaag tgagtataat ggaacgtttt gttactcctg aaggtaaata tgccaaaaca
     3301 aattatgagg ttctcgcgcg ctatagagca tttgaccatg tggctattca acttgagaca
     3361 ggaagaacac accagattcg tgtgcatttc tcttatattg gacatccgct tattggcgat
     3421 gatatgtacg gaggagatac gaatttgttg aaaagacaag cgctgcactc atgtcatctg
     3481 catttagtcc accctttgac agaaaaatat atggcgtttg atctaccttt accagcagat
     3541 atggaagaga taattcaaaa atcgaagtaa taagagtttt aaaaagttat ttggtcatgt
     3601 aaaatggaag aagcgaacaa atcgcatcaa ttttaggagg aaagaacatg aatttatcat
     3661 tagagggaaa aacatatgtt gtaatgggag tagctaataa gcgtagtatt gcttgggcaa
     3721 ttgcgcgttc actaaatgaa gctggagcga aacttgtatt tacatatgcg gacgatcgtg
     3781 cgaaaaaaag cattacagaa ctagtacctt cattaagcga agtaaatcaa aatccactta
     3841 tcttagcttg tgatgtaaca agtgaagaag ctattacaga aacatttgaa acaattaaag
     3901 ataaaactgg caaacttagt ggcttagcac attgtattgc tttcgctaac aaagactttt
     3961 taactggaga ttatttagaa gtagatcgta aaagcttctt acaggcacat gaaattagtg
     4021 cttactcatt cacagctgtt gctcgtgcac taaaacactt agaaatgttg acagaagatg
     4081 caagtttact aacattaact taccttggtg gggaacgtgt agtagaaaac tataatatta
     4141 tgggtgtagc aaaagcttct ctggatgcaa gtgttcgata ccttgctatg gacttagggg
     4201 caattggtgt tcgtgtaaat gctatttctg caggaccaat cagaacggta tctgctcgtg
     4261 gcgttagcgg tttctctgat tctatttcac tagtggaaga aagagcccca ctaaaacgtg
     4321 cgacacaagc ggaagaagtt ggcgatacag catattactt attcagtaat ttatctcgag
     4381 gcgttactgg cgaagtaatt catgtagata gcggttatca tattatt
//
LOCUS       DASDXX010000195         4411 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.195, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000195 DASDXX010000000
VERSION     DASDXX010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.195"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..98)
                     /locus_tag="U0280_002504"
     CDS             complement(<1..98)
                     /locus_tag="U0280_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463581.1"
                     /note="essential for production of a quorum sensing
                     autoinducing peptide; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HEM2272427.1"
                     /translation="MSNFTAKVPLSERMADVLISKDRWKDDEEGYL"
     gene            complement(355..966)
                     /locus_tag="U0280_002505"
     CDS             complement(355..966)
                     /locus_tag="U0280_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEM2272428.1"
                     /translation="MYRKLATVGMTVLLVGALSACSFNDDKDTSSNNSSNETTSSKSS
                     NNESSSDSLQNKSFDMSYEDAINAFKDKHSDAEISSVELEKSLGKYVYKVDGISNDNE
                     YEMKFNAETKEQLSDETDRLDREDAGGVEKENEKLSLDGIKSPKEAMDKAVSEQAGDV
                     TSWKIERELDTTYYEVTVKQDNNKYEIKLNAKTLEILQTEQDD"
     gene            complement(1119..1358)
                     /gene="rpsR"
                     /locus_tag="U0280_002506"
     CDS             complement(1119..1358)
                     /gene="rpsR"
                     /locus_tag="U0280_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEM2272429.1"
                     /translation="MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKIL
                     PRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK"
     gene            complement(1402..1938)
                     /gene="ssb"
                     /locus_tag="U0280_002507"
     CDS             complement(1402..1938)
                     /gene="ssb"
                     /locus_tag="U0280_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM2272430.1"
                     /translation="MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGER
                     EADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQF
                     LEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
                     PFASDGKPIDISDDDLPF"
     gene            complement(1994..2287)
                     /locus_tag="U0280_002508"
     CDS             complement(1994..2287)
                     /locus_tag="U0280_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEM2272431.1"
                     /translation="MARKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEW
                     GKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIKEEA"
     gene            complement(2566..3798)
                     /gene="arcA"
                     /locus_tag="U0280_002509"
     CDS             complement(2566..3798)
                     /gene="arcA"
                     /locus_tag="U0280_002509"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HEM2272432.1"
                     /translation="MKMEQALNITSEIGKLQTVLVKRPGSELENITPEYLESLLFDDI
                     PYLKMMQKEHDFFAKTMKDSNIEVLYLEKLAAEALREANNKESFLTKMIKESNQMDES
                     ALYVRDYLMSFDEEEMIRKLMSGLKKSEIPERKKKHLNEMMDEQYPFFLDPLPNLYFT
                     RDPAAVIGNGVTINRMFQPARRRESMFIELILKHHPRFSNQEIPVWSGRGEPFSLEGG
                     DELVLNEETVLVGVSERTDARAVERLAESLFSRSPKIKRVLAVEIPETRSFMHLDTVF
                     TMVNFAQFTIHPAIQNQQGELNIYILEKSENGLEITPRRDFQRVIAEVLDEPEIDFIP
                     CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSR
                     GRGGPRCMTMPLVRENLK"
     gene            complement(3877..>4411)
                     /locus_tag="U0280_002510"
     CDS             complement(3877..>4411)
                     /locus_tag="U0280_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEM2272433.1"
                     /translation="LVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGD
                     TVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAP
                     FVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVI
                     PMVVSFIKSKMDKKSAE"
BASE COUNT         1289 a          926 c          679 g         1517 t
ORIGIN      
        1 tttaaataac cttcttcatc atctttccag cggtctttcg aaatcagcac atccgccatt
       61 ctttctgaca aagggacttt tgcagtaaaa ttactcaact aattcacctc cactaatatt
      121 ttacaacgaa tttacccata ataaccaaaa atgtaatgaa atgtccgatt cttgtcatga
      181 acgaccaaaa aagagcaaaa ttgccgattt tttggataca tttcagaata ttcaatcgtg
      241 taaaaaggac tgtatgatag gtttaaaaac ccatattaat attttattta agtaagttta
      301 ttcattaaaa aagccaactg taaaagaatg ttcacagttg gcttttccat tttattaatc
      361 gtcttgttcc gtttgaagaa tttctaaagt ttttgcattt agtttgattt cgtatttgtt
      421 attatcttgt tttactgtca cttcataata agttgtatct aattctcttt ctattttcca
      481 acttgttacg tcaccagctt gttcagaaac agccttatcc atggcttctt ttggtgattt
      541 aattccatct aagctaagtt tttcgttttc tttttcaact ccacctgcat cttctcggtc
      601 aagtcgatct gtttcatcac ttagttgttc ttttgtttca gcattgaatt tcatttcgta
      661 ttcattatca tttgaaatcc catcaacttt atagacatat tttcccaagc ttttctctaa
      721 ttcaacgcta gatatttctg catcactatg tttgtctttg aatgcgttaa tcgcgtcttc
      781 ataactcata tcgaagcttt tgttttgcaa gctatctgat gaactttcat tattactgct
      841 tttgctacta gtagtttcat tgctgctatt atttgatgat gtatccttat catcattaaa
      901 actacatgct gataatgctc ctactaataa taccgtcatc cctactgttg ctaattttct
      961 atacataatt gtttccccct gtgcattttt ttacttctat ataagaataa catgaataaa
     1021 tagcattaac ttccttctta ggtcctaggt tcacatgatc caaggtctaa tttatgaaaa
     1081 aacagtctag aaatgaattc tagactgtta aaattaattt atttttcttc agcaacaaat
     1141 ggtagtaatg ccatttggcg tgagcgtttg atagcaacag taagtttacg ttgatattta
     1201 gcgcttgttc cagttacacg acgaggtaaa attttaccac gttcggaaac gaatttttta
     1261 agaagttcta catctttata gtcgatatgc gtaataccat tggaagtaaa gtaacatact
     1321 tttttccgac ggcgtccgcc tctgcgtcct ccagccattg aaagttcctc ctatcttaaa
     1381 gttcaaaccg ctaaaatgaa tttagaatgg caaatcgtca tcagaaatgt cgattggctt
     1441 accatcactt gcaaaaggat cattattagt ggattgataa ttttgatttt gagattgttg
     1501 ctggtcctgt ccgaatccac cgttatttgt aggtgcttgt ccgaagttat ttccaccgct
     1561 attataatta ttgttgttat tgccactttg atagttattt ccgccaccgc cattagaatt
     1621 acgcggttca aggaattgaa cactctctgc tacaatttca gtcacataaa cacgtttacc
     1681 gtcgttcccc tcgtaattac gagtttgaac acggccatca acgcccgcca tgcttccttt
     1741 cttcaggaaa ttagcaacgt tttctgccgg tttacgccaa acaacacaat taataaagtc
     1801 agcttctcgt tctccttgtt ggttagtgaa agtgcgattt acagctaatg taaaagtcgc
     1861 aacagccaca ccagctggag tgtaacgtaa ttcaggatct tttgttaagc gtcctacaag
     1921 tactacacga ttcatcatgc aaaaccaacc tcctctcgtt tagtaaatca aggtcctagc
     1981 cttgaatgaa ttcttatgct tcttctttaa ttaccatatg acgaatgata tcatcagaaa
     2041 ttttagctaa acggtcaaat tcgttgatag aatctgcttt atcagcgttt aatttcacga
     2101 tgtggtaaaa accatcacga tagtcattga tttcgtatgc taagcgacgt ttaccccatt
     2161 cttttgattc gatgatctcc gcaccatttt cagttaagat tccgtcaaag cgttctacaa
     2221 cagctttttt ctcatcttct tcaatgtttg ggcgaatgat gtacataatt tcgtactttc
     2281 tagccatcta ctctacacct ccttgtggtc ttaagcggct ctgatatagc atgaaaccat
     2341 accatatccc tgaaattcag actgccttta gcaagcctta aaatcaagag cgagcaagga
     2401 ataatttata attactcaca ataaaatatt atatcatagc gctaactaac cagcaagata
     2461 tttctcgaaa attctggttt gaaaacacta tagcacatct caaaatagcc ggcaatactt
     2521 tttacgaaag tcttgttttg caggggaatt ctcgttttta aagacttatt ttagattttc
     2581 tctaacaagc ggcatcgtca tacatcttgg ccccccgcgg cctctagaaa gctccgaact
     2641 aatcacttca tgaaccttaa tacccgcact tcttaacaga tcgtttgata cttgatttcg
     2701 atcatatgta attacttctc caggagcaat tgctaacgtg tttgccccat cattccactg
     2761 ctctcgcgcc gaaacaatta catcttctcc gccacaagga ataaaatcaa tttctggctc
     2821 atccaaaacc tccgcaatca cgcgctgaaa atctcttcgc ggagtaattt ctaatccatt
     2881 ctcacttttt tctaaaatgt atatattaag ttctccttgt tgattttgaa ttgctggatg
     2941 aatcgtgaac tgtgcaaaat taaccatggt gaaaaccgtg tccaaatgca taaatgacct
     3001 tgtttcagga atttcaacag ctaaaactcg tttaattttt ggagaacgac taaataaact
     3061 ttctgcaagc cgttcgactg ctcgtgcatc cgttcgctca gatacaccga caagaacagt
     3121 ctcttcattt agaactaact catctccacc ttctaaagaa aacggctctc cgcgccctga
     3181 ccataccgga atttcttgat tactaaaacg aggatgatgt ttcaaaatca gctcgataaa
     3241 catcgactct cgccttctag ctggctggaa cattctatta atcgtcacac cgttaccaat
     3301 aacagctgct ggatctcgag tgaaatacaa atttggtaat ggatctagga aaaatggata
     3361 ttgttcgtcc atcatttcat ttaagtgttt ctttttgcgt tcggggattt ctgatttttt
     3421 taaaccggac ataagttttc taatcatttc ttcctcgtca aaagacatca aataatctcg
     3481 tacatatagc gcactttcgt ccatttgatt ggattcttta atcattttcg ttaaaaaaga
     3541 ctctttattg ttagcttctc gtaatgcttc agcagctagt ttttctaagt agagtacttc
     3601 gatgtttgaa tctttcattg ttttagcaaa aaaatcatgt tccttctgca tcatttttaa
     3661 atacggtata tcatcaaata ataaagattc taggtattct ggtgtgatat tttcgagttc
     3721 agaacccggc ctctttacaa gaactgtttg gagtttgcca atttcagatg taatattcaa
     3781 tgcttgttcc attttcatca cctcttccta actaattacc ccaaaagttt gtcatgtatg
     3841 cgagagattt cccgggaaat aaaaaaagca cagagattat tctgcgcttt ttttgtccat
     3901 tttactttta atgaacgaaa ctaccattgg gataacggaa actacgataa ttccgattac
     3961 tactaacgag aagttgtctt taacgattgg gaagttcccg aagaagtaac ccgcgagcgt
     4021 acaaagtaat acccaaacag ttgcccctaa aatattataa tttaagaaat aacgataatt
     4081 catacggctt gctccagcta caaatggcgc gaacgtgcga ataaaaggca tgaacctagc
     4141 aataaaaatt gtttttccac catgtttatt gaagaacgcc tccgcttttt ccattttttc
     4201 tttatttatt agtttcccaa accagctatc ttctggtatg gatgttccaa tctttttacc
     4261 gatatgatag ttcactgtat cgcctagaac tgctgctaac cataaagtaa taattagcgg
     4321 aacaatatgt aaaatcgaac catctaatac agataatgca ccggctgcga atagtaatga
     4381 atctcctggt aaaaatggaa atactaccaa t
//
LOCUS       DASDXX010000196         4373 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.196, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000196 DASDXX010000000
VERSION     DASDXX010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4373
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.196"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            226..603
                     /locus_tag="U0280_002511"
     CDS             226..603
                     /locus_tag="U0280_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2272434.1"
                     /translation="MKFDDSKPIYKQIVHYIHTEIVTGIYNAGDKLLSVRELATKLEV
                     NPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLG
                     INKEKIIAWVKKVEEVEVNVSGK"
     gene            587..1276
                     /locus_tag="U0280_002512"
     CDS             587..1276
                     /locus_tag="U0280_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272435.1"
                     /translation="MLVGNNIAKSYPNKLVLQNVDFEAKPGDMIVLTGENGSGKTTLL
                     DMLASLKKPDSGTLELDNEVFTTNDIRQQIAYLNNELYAKKSTTIEDYMKQHGLLFEN
                     MELDKWDRLLAGWRINKRLKLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMA
                     RSEVMKAIISETNPDAITIISSHHLEGTEKLYSKLWLIKDNTLKTIETETYREETGNA
                     LIDFYKEEMNK"
     gene            1273..1977
                     /locus_tag="U0280_002513"
     CDS             1273..1977
                     /locus_tag="U0280_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272436.1"
                     /translation="MTKMITFYLKQISPILLIGLAIILGLNFLGFTMNLLEGTDLLFR
                     AIRGTTVMSLILVLITTWKITKLDTSKENVTLASLSGFSETKKFFGKLFAAYLSAITV
                     ILLQSAFIWYYGFETGRMEAGDALSFVSGTLMMFLFIAMFVCYFVIPVGWLKDHVKAS
                     SLQKAAVILLLFAILIVNLLAEYYLHIYNGPGIISILPNGHFDISLLSIVWNVGLCSV
                     IAGSYIYMKSKKMDTI"
     gene            1992..3992
                     /locus_tag="U0280_002514"
     CDS             1992..3992
                     /locus_tag="U0280_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2272437.1"
                     /translation="MLEIKHLKKSYKLGKKNETPVLKDINVTIQDGEFAAIIGKSGSG
                     KSTLLNIISGLDTDYEGKVLYNGEDLQDIDLDAYHFNHIGFIFQSFHLVNHMSVIENV
                     KVPLYLNPELAESDRNARALDLLKQVGLEDFASKKPTQLSGGQKQRVAIARSLANNPD
                     MIIADEPTGALDSVTSDEIIKLLKDLAAKGTTVIVVTHDLNIADQTDAVLRLADGEVI
                     SFERKKEVVQKVTHKNEKKLRLNWWATAKISFKSFFNRKFRNLLVALGTSIGIIAILL
                     AFGLGNGVNQSLSKIFGTTFSPNQITTYYKEDGGSKSPEPTTPLTSSEIKKIKQLYED
                     ENITEIYERTTVQGIKFEYDGEYLKGISGEMQEANFKPSRYEDLTVKDEYLLSGKMVT
                     SDETGAVIPSSVARAILGKKDSDELTKSDGDKLIGKKITLVYAGRNSDTKNTVKTETI
                     ISGITNPSKEGFARGFDVSTKTMNDFIKTTGIEKPILSVDAFTKTTAEAEEIVEKYED
                     DKDWANYSITNANAFVDTFSQFTDIIVYLIAFIAGLSLAVAGVMIAIVLYIGVVERTR
                     EIGVFRAIGYRKRHIRGLFMMEASYIIILANVLSSLVAMKIAKIASPILETKIGFEDM
                     IHISFWNFLVTLAITITIGFIFSIYPSNKAAKLDAAEALRSE"
     gene            4021..>4373
                     /locus_tag="U0280_002515"
     CDS             4021..>4373
                     /locus_tag="U0280_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272438.1"
                     /translation="MKKPLKISLIVVGIAVVIFAGVMLSYRFIKSMDVTENAEINKSA
                     TGDHVLLATQGSKFKDSVMDQVKKDMEGKNVHVSIIDTTKLDKVKADDYDKVVLFTTV
                     QSDDIPENVTTFMND"
BASE COUNT         1561 a          668 c          861 g         1283 t
ORIGIN      
        1 ttatacgcta tttctttaaa aaaaatatta tgaacagttt gtgacgttat ctagattggc
       61 ttattgtata catttttaat ttaaaaaatt ttttaagcaa taaaaaacgc attttagata
      121 tatgtaatgt ataaatgaag cgattttcct ttgatatagt acattcatag ccagtgtgac
      181 ctatgtggta cggtgatacg gacagacagg cgaaaggagg aaattatgaa gtttgatgat
      241 agtaaaccca tttataaaca aatcgttcat tatattcata cagaaattgt tacaggaatt
      301 tacaatgctg gtgacaagct actatctgta agagagttgg caacaaagtt agaagtaaat
      361 ccgacaacca tccagcgagc ttatgcagaa ctggaagaaa cggaaattat ttacaccgtt
      421 cgaggtactg gtaaatattt gacagaagat aagaggagaa ttgagcaatt ggaaaatgac
      481 atcgcaaaac aacttaccga aaattttatt agtgaaatga gtaaattagg aattaataaa
      541 gaaaaaatta tcgcttgggt gaaaaaagta gaggaggtag aagtaaatgt tagtgggaaa
      601 taatatcgct aaatcctatc caaataaatt agtcttacaa aatgtagact tcgaagcaaa
      661 accaggcgac atgatcgtgc tcactggtga aaatggtagc gggaaaacga ccttgctaga
      721 tatgttagca agcttgaaga aaccggatag tggcacattg gaattagaca atgaagtatt
      781 tactactaat gatatccgcc agcaaatcgc ttatttaaat aatgaacttt acgctaaaaa
      841 aagtactact atagaagatt atatgaaaca acatggtttg ctttttgaaa atatggagtt
      901 agataagtgg gaccgattac ttgctggatg gcgaattaac aaacgactaa aacttggcga
      961 actatcaaca ggtatgttaa tgaaagtgaa aattggtagt gtgttagcaa gaaaagccaa
     1021 attgtatctt tatgatgaac cttttgcgag tatcgatatt atggctcgtt cagaagtaat
     1081 gaaagctatt attagcgaaa caaatccaga tgctatcacg attatttctt cccaccattt
     1141 agaaggaacc gaaaaattat atagcaaact gtggttaatt aaagataaca cgttaaaaac
     1201 tattgaaaca gaaacttatc gcgaggaaac aggcaacgca ttaatcgatt tctataagga
     1261 ggaaatgaac aaatgacaaa aatgattact ttttatttaa aacaaatcag tcctattctt
     1321 ttgattggac ttgcaattat cttggggctg aactttctgg ggttcacgat gaatctgcta
     1381 gagggaacgg atttgctttt tagagcaatt cgaggaacga cggtaatgag cctaattcta
     1441 gtgcttatta cgacttggaa aatcacgaaa ctcgacacat cgaaagaaaa tgtaacactt
     1501 gcttctcttt ctggattttc agaaacaaag aaatttttcg gaaaactatt tgctgcttat
     1561 ttatcagcaa ttactgtaat tttacttcaa agtgccttta tttggtatta cggttttgag
     1621 acaggacgaa tggaagcagg cgatgcgtta tcgtttgttt ctggaacgtt gatgatgttt
     1681 ttatttatcg ctatgtttgt ttgttacttt gttattccgg tagggtggtt aaaagatcat
     1741 gtgaaggcga gttctcttca aaaagcggca gttattctac ttctctttgc tatcctaatt
     1801 gtcaatttac tagctgaata ctacttgcat atttataacg gccctggaat catttccatt
     1861 ttacctaatg gacactttga tatttccctt ctatctattg tttggaatgt aggcttatgt
     1921 tcagttattg caggcagtta catctatatg aaatctaaaa aaatggatac tatttgaaag
     1981 taggagaata aatgttagaa attaaacacc ttaaaaaatc ttataagtta ggaaagaaaa
     2041 acgaaacacc agttttgaaa gatattaatg tgaccattca agacggagaa tttgcagcaa
     2101 ttataggaaa aagtggtagt gggaagtcta cgttgctaaa tattattagt ggacttgaca
     2161 ctgattatga agggaaagtt ttatacaatg gggaagattt acaggatatt gatttagatg
     2221 cctatcattt taatcatatc ggctttattt ttcaaagctt tcatctagtc aatcatatgt
     2281 ctgttattga aaatgtaaaa gttccattat atttgaatcc tgaattagca gaaagcgatc
     2341 gaaatgcgag agcgcttgat ttgctgaaac aagtggggct agaagacttt gctagcaaaa
     2401 aaccaacaca actatctggt ggacaaaagc aaagggtagc gattgcaagg tctctcgcta
     2461 ataatccaga tatgattata gccgatgaac caactggagc actggatagt gttacttcag
     2521 atgaaattat taaactgctt aaggatttgg ccgcaaaagg gacaaccgta atagttgtaa
     2581 cccatgattt aaacattgca gaccaaactg atgcggtatt acgcctagca gatggagaag
     2641 taatttcatt tgaaagaaaa aaagaagttg tccaaaaagt tacccacaaa aacgaaaaaa
     2701 agttaagact aaactggtgg gctactgcaa aaatttcttt taaaagtttt ttcaatagaa
     2761 aattccgaaa tttgctcgta gcacttggca cctcgattgg aattatcgct attttattag
     2821 catttgggct tggaaatgga gtaaatcaaa gtctttcaaa gatttttggg acaacttttt
     2881 cacccaatca gattacgact tattataaag aagacggtgg ctcgaaatca cctgaaccta
     2941 ccactccatt aacgagtagt gagatcaaga aaattaagca actgtatgaa gatgaaaata
     3001 ttacagagat atacgaacgc actactgtcc aaggaattaa gtttgaatac gatggcgaat
     3061 atttaaaagg tatttctggt gaaatgcaag aagccaactt taagccatca cgctatgaag
     3121 atttaaccgt caaagatgag tatcttctaa gcgggaaaat ggtgacaagt gatgaaaccg
     3181 gagcagtcat cccgtcaagt gtagcaagag ctattcttgg aaaaaaggat tctgatgaat
     3241 taacaaaaag tgatggtgat aaactcattg gtaaaaaaat aaccttagtt tatgccggaa
     3301 gaaacagtga cacaaaaaat acggttaaaa cagaaacaat tatatccggt attaccaacc
     3361 catctaagga aggttttgct agaggatttg atgtttccac aaaaacaatg aacgacttta
     3421 ttaaaacaac tggtattgaa aaaccgattt tatctgtaga tgcattcaca aaaacgacag
     3481 cagaagcaga agaaatcgtg gagaaatatg aggatgacaa agactgggcg aattattcga
     3541 ttactaacgc gaatgctttc gtagatacat ttagccagtt taccgatatt attgtgtact
     3601 tgattgcctt tattgcaggt ctttcgcttg cagttgctgg cgtgatgatt gctatcgtgc
     3661 tttatatcgg tgtggtggaa cgaacaagag aaatcggtgt attccgagcg attggttatc
     3721 gtaaacgcca tattcgcgga cttttcatga tggaagcaag ttatattatt attttagcta
     3781 atgtgctatc aagtcttgtc gccatgaaaa ttgcaaaaat agccagtccc attttagaaa
     3841 cgaaaattgg ctttgaagat atgattcaca tttcgttctg gaatttcctt gttacactcg
     3901 caataacaat tactattggc tttattttct cgatttatcc aagtaataaa gcagcaaaat
     3961 tagatgcagc agaagcttta agatcagaat gacccaacta acagaaaaga ggaatttaac
     4021 atgaaaaaac cactaaaaat cagcttaatc gtcgtaggaa tcgccgtagt catatttgca
     4081 ggagtgatgc tatcctaccg ttttattaaa tcaatggacg ttacagaaaa tgccgaaata
     4141 aataaatcag ctacaggaga tcatgtatta ctggcaactc aaggtagtaa attcaaagac
     4201 agtgtaatgg accaagtgaa aaaagacatg gaaggcaaaa acgtacatgt ttcgattatc
     4261 gatacaacaa aattagacaa agtaaaagca gatgattatg acaaagttgt tctattcacc
     4321 acagtgcagt ccgatgatat tccagaaaac gtaaccactt ttatgaatga taa
//
LOCUS       DASDXX010000197         4308 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.197, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000197 DASDXX010000000
VERSION     DASDXX010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.197"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            102..1817
                     /gene="ezrA"
                     /locus_tag="U0280_002516"
     CDS             102..1817
                     /gene="ezrA"
                     /locus_tag="U0280_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HEM2272439.1"
                     /translation="MYYMLIGFIIVVIAVIGAGYILKRKHYQRINELEEKKIKLRERP
                     VIDELSKVKKLKLTGQTEALFESWRSSWDEIETRLFPDLEEVLLEAEMNTDRYKFRSA
                     THAENDIEQMLVVIEKQMDQILGGLKELLISEEKNAKESRATKEKFAELRREVLTRGF
                     KLGETLPYIETKLSELSESLNSYDSLTDQGDHLEAREIVIVVQKEMQVIEAQMERIPS
                     LLHETDTILPEEMTKLRAGYEEMVRKGYYLAQMELDKEISRMKNQIDKMKKNVINLDL
                     DEAEQGVEELHNEIDLFYDTLEHEAEARHFVKENHSPTSDKLQRQNAVSDALAEQITE
                     VKQTYHVAEDDLAVYLKTSAKLSEAKENFEQLTALIASGEIAYSAAQDTLKEIDAALI
                     TISAEQDKFAEELRSLRKDELEARDDAERMRRAIITLDRKMERERLPGLPEEYLSLRE
                     HMGESINALEKRLEEKPLNMKAVSQDWRIAEEDLTHLTEKAEEMMENVRLVEHVIQYA
                     NRYRLRNKELADELVQAENHFYNDYQYKKALEIAVTALEKVETGAFKKVEKAYESKVS
                     VDDIE"
     gene            1945..3084
                     /locus_tag="U0280_002517"
     CDS             1945..3084
                     /locus_tag="U0280_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2272440.1"
                     /translation="MIYFDNSATTKPNAAVLETYTKVASNYFANPSSLHRFGAKSKEL
                     LDASRKQIAAMVSALPEEIIFTSGGTEGNNLAIKGLVYSYQNRGKHIVTSSIEHPSVR
                     MVMEELEQEGFTVTYLPVDKNGVIKMEALKAALTDETILVSIMGVNNEVGSIQPLHEI
                     GEMLKLLEHTFFHVDFVQGIGKIPLALNENAIDLLTFSGHKFHALRGTGILFKRKNVH
                     LHSEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRKEALIEIRDYLLTEIAQM
                     SDMTVHTKQSVAAPHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLK
                     AMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK"
     gene            3086..4297
                     /gene="thiI"
                     /locus_tag="U0280_002518"
     CDS             3086..4297
                     /gene="thiI"
                     /locus_tag="U0280_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HEM2272441.1"
                     /translation="MEFDRMLIRYGELSTKGKNRKQFVTKLAQNVKRAMTDLPEVRIH
                     GERDRMYIILNGADYQLAEERLKPIFGIQSFSPAVRVNLDVEEVKAAALALVQDAHEE
                     NGTFKVAARRSHREFPLDSNEINQEIGAYVLQNMEDLTVNVKNPDVKLTIDVRKEGVF
                     LSCRTILGAAGLPVGSSGRAMLMLSGGIDSPVAGYLAQKRGVEIEAVHFHSPPYTSEQ
                     AKQKAVDLAAKLAKYSGQVQMHIVPFTEIQEVIKQQIPESVIMTVTRRMMLRITDELR
                     RRRNGLAIVNGESLGQVASQTLESMLAINAVTATPIIRPVVSMDKNEIIQIAQKIDTY
                     NLSVQPFEDCCTIFTPPSPKTKPKLDKIEHYESFTDFEALIAKALDNIETISVNVAET
                     AQVKDEFADLF"
BASE COUNT         1503 a          702 c          957 g         1146 t
ORIGIN      
        1 tatactacat atggaaagat gtacataatt gaaaagatgt atgagcagca cgagtgtggc
       61 tgtttttctt tcacaagtta acgttgatgg gaggattttg gatgtactac atgttaatcg
      121 gctttattat cgtagttatt gcagtcattg gtgcaggcta catattaaaa agaaaacatt
      181 accaaagaat aaacgagtta gaagagaaaa agattaaact cagagagcgg ccggttattg
      241 atgaactttc aaaagtgaaa aaattaaaac taacaggtca gacagaagcg ctttttgaat
      301 catggcgttc gtcctgggat gaaattgaaa ctagattatt tcctgattta gaagaagtgt
      361 tattagaagc agagatgaac acggaccgtt acaagttccg ttctgctaca cacgctgaaa
      421 atgatattga gcaaatgctc gttgtaattg aaaagcaaat ggatcaaatt cttggtggac
      481 taaaagagct acttattagt gaagaaaaaa atgccaaaga aagtcgtgcc acgaaagaaa
      541 aatttgcgga gttgcgccga gaagttttga caagaggatt taaacttgga gaaacgttac
      601 catatattga gacaaaacta agtgaactgt cagaaagctt aaatagctat gattcattaa
      661 ctgaccaagg tgatcattta gaggcacgag aaatcgttat agtggttcaa aaagaaatgc
      721 aagtaatcga agcgcaaatg gagcgaatcc cgtcattact gcatgaaaca gataccattt
      781 tgccagaaga aatgactaaa cttcgcgctg gctatgaaga aatggtgcga aaaggttatt
      841 atttagctca aatggagtta gataaagaga tttctcgcat gaaaaatcaa attgataaaa
      901 tgaaaaaaaa tgtaattaat cttgatttag atgaagcgga acaaggagta gaagaattac
      961 ataatgaaat cgatttgttt tatgatacgc ttgaacacga agcagaagct cgccatttcg
     1021 tgaaagaaaa tcatagccca acttctgaca agttacaacg ccaaaatgcc gtttcagatg
     1081 cacttgctga acaaattaca gaagtaaaac aaacctatca tgttgctgaa gatgatctag
     1141 cggtttattt aaaaacgagc gctaaattga gtgaagcaaa agaaaacttt gaacaattaa
     1201 ctgctctaat tgctagtggt gagattgcct actcggcagc gcaagataca ttgaaagaaa
     1261 ttgatgcagc gcttattacg attagcgctg agcaggacaa attcgctgaa gaattgcgtt
     1321 ctttgcgtaa agatgaacta gaagcgcgtg atgatgctga acggatgcgt cgtgcaatta
     1381 ttacactaga tcgcaaaatg gaacgagaac gtttgccagg tcttccagaa gagtatttat
     1441 cgctacgaga gcatatgggg gaatccatta atgcgcttga gaaacgtttg gaagagaaac
     1501 cgctaaatat gaaagcagta agccaagatt ggcgtattgc agaagaagat ttaactcatt
     1561 taactgaaaa agccgaggaa atgatggaga atgttcgctt agttgagcat gttatccaat
     1621 atgctaaccg ctatcgattg cgtaacaaag aacttgcaga tgaactcgtt caagcagaaa
     1681 accatttcta caatgattat cagtataaaa aagcattaga aattgctgta accgcgctgg
     1741 aaaaagtgga aacaggagca tttaaaaaag tcgaaaaagc gtatgaatca aaagtaagcg
     1801 tcgacgatat tgaataaaaa cgtaaaaaca ggtatttcta tttttataat aggaatcctg
     1861 tttttttatg aaaatagtag ttggaaagtg ttggaattat gataaaatgg agagtggaat
     1921 attggggagg agaatttagt ttttatgatt tatttcgata atagtgcgac aacaaagcca
     1981 aatgcggccg tacttgaaac atatacaaag gtagcgagta attattttgc taatccttct
     2041 tcgctgcatc gttttggtgc taagtcgaaa gagctgcttg atgcatcaag aaaacaaatc
     2101 gctgcgatgg tgagcgcttt gccagaagaa attattttta catctggtgg cacagagggg
     2161 aataatttgg cgattaaagg gctcgtttat agttaccaaa atcgcgggaa acatattgtt
     2221 acctctagca tcgagcatcc ttctgttcgt atggtaatgg aagaacttga gcaggaaggt
     2281 tttactgtca cgtatttacc agtagataaa aacggcgtca tcaagatgga agcattgaaa
     2341 gctgcactca cagatgaaac gattttagtg tctattatgg gcgtgaacaa tgaggtggga
     2401 agcatccaac cactgcacga aattggcgaa atgctaaaat tgcttgaaca tactttcttt
     2461 catgtagatt tcgttcaagg tatcggaaaa ataccacttg cacttaatga gaatgctatt
     2521 gatttgctca ctttttcagg gcataaattt catgctctac gtggaaccgg aatacttttt
     2581 aaacgaaaaa atgtgcattt gcattcagaa attcttggtg gtgggcagga aatgggctac
     2641 cgcagtggaa cagaaaattt agctgggaat gttgcgctgg caaaagcatt acgactaacg
     2701 ctcgaaaatg agccacgaaa agaagcatta atcgagattc gcgattattt actaacggaa
     2761 attgcgcaaa tgtctgatat gacagttcat acgaaacaaa gtgtcgcggc tccgcatatc
     2821 gtttgttttt cggcaaaagg gcatcgtggg gaaattttag tacatgcttt agaaaaagaa
     2881 gatatttaca tttccaccac tagtgcgtgt tcttctaagc agaagctagc aagcagcacg
     2941 ttaaaagcga tgggtgtgac ggacgaagaa gcaacaggag cagtacgtgt tagcttatcg
     3001 tatgaaaatc gtttatctga agcgaaaatt tttattcaaa aactgcaaga aatcattgaa
     3061 aatctaaata aagtggtgaa ataaattgga atttgatcgt atgttaatta gatacggaga
     3121 gttatctaca aaaggaaaaa acagaaaaca atttgtgaca aagttggcgc aaaacgtcaa
     3181 acgtgcaatg acagatttgc cggaagttcg tattcacgga gaacgtgacc gaatgtatat
     3241 tattttaaat ggggcagatt atcagctcgc agaagaacgt ttaaaaccga ttttcggaat
     3301 ccaatccttt agtccagctg tacgcgtcaa tttagatgta gaggaagtaa aagccgctgc
     3361 acttgcctta gtacaagatg cgcatgagga gaacggaaca tttaaagtcg cagcaagacg
     3421 tagccaccgc gagtttccgc ttgattctaa tgaaatcaac caagaaatcg gtgcttatgt
     3481 attacaaaat atggaagatt taacggtcaa tgttaaaaat cctgatgtaa aactaaccat
     3541 tgatgtgcgt aaagaaggcg tatttttatc atgccggaca attcttggtg cagctggtct
     3601 gccagtaggt tcatcgggtc gtgcaatgtt aatgctttcg ggaggtattg atagtccggt
     3661 tgcaggctat ttagcccaaa aacgtggcgt agaaattgaa gcagttcatt ttcatagccc
     3721 accgtataca agtgaacaag cgaaacaaaa ggcggttgat ttagctgcaa aattggctaa
     3781 atacagcgga caggtacaaa tgcacatcgt tccatttaca gagattcagg aagtgatcaa
     3841 acaacaaatt cctgaaagtg tgattatgac cgtaactcgt cgaatgatgc ttcgaattac
     3901 ggatgaactt cgtcgcagga gaaacggttt agcgattgtt aatggcgaaa gtttagggca
     3961 agttgccagc caaacattgg aaagtatgct agcaattaac gccgtaacag cgacaccaat
     4021 cattcgtcca gtcgtatcca tggataaaaa tgaaatcatt caaatcgcgc aaaagattga
     4081 tacgtataat ttatcagtgc aaccatttga agattgctgt accattttca cgccaccatc
     4141 tccaaaaaca aaaccaaaac tagataaaat cgagcattac gaaagtttca cagattttga
     4201 agcgttaatt gcgaaagcat tagacaacat tgaaaccatt tctgtgaatg tagcggaaac
     4261 tgcacaagtc aaagatgagt ttgctgattt attttaagat taaccgtt
//
LOCUS       DASDXX010000198         4182 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.198, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000198 DASDXX010000000
VERSION     DASDXX010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.198"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1588
                     /locus_tag="U0280_002519"
     CDS             <1..1588
                     /locus_tag="U0280_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2272442.1"
                     /translation="LESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLT
                     TEGMFKNCSNLMEVDLSGLDTSAVTTMWDMFNSCRALEELDVSHFDTSSVTNMSYMFY
                     DNRNLEVLDVSNLDTGSVTNMYAMFEDCTSLEELDVSHFDTSSVTDMYRVFNGCEKLK
                     KLDVSNFDTSSATAMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSN
                     FDTSSVTNMAAMFSDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAAS
                     STDMFTGTTSLSYLFVSHNVSNFNGLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTG
                     YRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTN
                     KFDFSLPATVSATLYAKWVENYTVVIPASISLNEATELKVEGINRGSKTLSVGLNYEE
                     TTISESNKLTLANTADTTVQCLAPLSWDGSETNPKKAILTLAPGSEITEGDAVMEIES
                     PENIQAGKYTGNLVFSINYE"
     gene            1724..3481
                     /locus_tag="U0280_002520"
     CDS             1724..3481
                     /locus_tag="U0280_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2272443.1"
                     /translation="MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSL
                     DTSNIIAEEVAQEKPAEVEQLEEIPITDELMQNPDVLEQPVADSDDTDLTVVSSGDFW
                     TIYRNTVNNEYSLCMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFEAYFRGTVFT
                     VLESVRIEQCNLSGVTSFDMAFYNSGIEKVIIRDNDYPTAPSLLATTYMFSLCRNLSE
                     LDLSGLDTSAVTNIYGMFQNCISLEELDLSNFDTSSVTNMYSTFSGCRSLEKLDVSNF
                     DTSSVTNMQFMFEKCSSLEELDLSNFDTSSVTTMSYMFQLCPALKSLYLDNFTDAAIM
                     TGMFGGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPTGY
                     RKGAFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWDEIVPVKEGHYFDGWYLNQDCTNK
                     FDFSLPADASITIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTAM
                     SVSESNKLTLANTADTTVQCLAPLSWDGSETNPEKAILTLAPGSEITEGDAVMAIEAP
                     ENIQAGKYTGNVVFSIKYE"
     gene            3547..4020
                     /locus_tag="U0280_002521"
     CDS             3547..4020
                     /locus_tag="U0280_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uracil-5-)-methyltransferase"
                     /protein_id="HEM2272444.1"
                     /translation="MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWN
                     GKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLW
                     ISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV"
     gene            4040..>4182
                     /locus_tag="U0280_002522"
     CDS             4040..>4182
                     /locus_tag="U0280_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272445.1"
                     /translation="MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYT
                     LVVP"
BASE COUNT         1360 a          647 c          918 g         1257 t
ORIGIN      
        1 acttgagagt gtgagaattg aacgttcgaa tctatctaga gtgacgtctt ttgcactcgc
       61 attttatggt tcaggaattg aaaaagttat cattagagat aataattatc cgacagcacc
      121 atctttactc actacggaag gtatgtttaa aaattgttcc aaccttatgg aggttgattt
      181 gagtggtctt gatactagtg cggtaactac tatgtgggat atgtttaaca gctgtagggc
      241 acttgaggaa ctggatgtaa gtcattttga tacgagttca gtaactaata tgtcttacat
      301 gttttatgat aatagaaacc ttgaggtgct ggatgtaagc aaccttgata ccggttcagt
      361 aactaatatg tatgccatgt ttgaagattg tactagtctt gaagagctgg atgtaagtca
      421 ttttgatacg agttcagtaa ctgatatgta tagagtgttt aatggctgtg aaaaactgaa
      481 gaaactagat gtaagtaatt tcgataccag ttccgctact gcaatggttc aaatgtttag
      541 aaattgtagc gcccttgaga agttggatgt aagtaatttt aatacgagct tagtaactga
      601 tatgcgtgcc atgtttgctg gttgtactag tcttgaagcg ttagatgtaa gtaattttga
      661 tacgagttca gtaactaata tggctgccat gttttctgat aatgaaaaac tggagaagct
      721 tgatttaagt acctttgata ccagttcagt gactaacatg ggtaccatgt ttaaaaattg
      781 tacagcgtta aaatctttat ttctagataa ttttacacat gcagcaagct cgacagatat
      841 gtttactgga acaacctctt tatcttactt gtttgtcagt cacaatgtaa gcaattttaa
      901 tgggttagaa aatacaagct ggtatgacga aaagaattgg gtacagtttt ctaatctctc
      961 gcaactacag acatatcacc ggaaacaaag tgaacctaca ggctacagaa aaggtgcctt
     1021 cctttcctta acaatggatg cgatgggtgg agaatttgaa gatgcggaag aacaaaaagt
     1081 acaaaataaa atttctgggg agtactggga agaagtgatt ccagtaaaag aaggacatta
     1141 ctttgacggg tggtatcttg atcaaaattt cactaacaag tttgacttct cattgccagc
     1201 aactgtttca gcaaccctct acgccaaatg ggtagaaaat tatacggtgg ttattccagc
     1261 gtctatttcc ttaaatgaag ctactgaatt gaaggtagaa gggattaatc gtggaagtaa
     1321 aactttatcc gtaggtttga attatgagga aacaaccatt tctgagagca acaagctaac
     1381 cttggccaat acggcagaca caacagtcca atgtttggcg ccactgagtt gggacgggtc
     1441 agaaactaat ccgaaaaaag cgattttaac cctcgctcca ggttcggaaa taacagaagg
     1501 cgatgcagtc atggaaatag aatccccaga aaatatccag gctggaaaat atacggggaa
     1561 cttagtattt tcgattaatt atgaataact ttgctaagca agccatagaa ttttaagaag
     1621 ttaaaatttt atggccggaa aagcttttcg actcctctat aattaaattg cagctagaaa
     1681 gttcggcatc tagaaactaa ttaggaaaga aggaggggag ctgatgaaaa agttttccat
     1741 gcgagtggtc cttattattt ctgtgctttt tattgctttt gggagcgcta atgtttctat
     1801 cgcacaagaa agggacacaa cgaataagct tccagaagag gagctaggtt ctctggatac
     1861 ctctaatatc attgcagaag aagtcgcgca agagaaacca gccgaggtgg agcaactaga
     1921 agaaatccca attacggatg agttgatgca aaatccagat gttctggagc agcctgttgc
     1981 tgattccgat gatacggatt taacagtggt cagctcaggt gatttttgga cgatttatcg
     2041 taatactgtg aacaatgaat atagcttgtg tatgtttggt aacgtgccaa gcagtagacc
     2101 aaccgcttgg aatagttatt tgaaaagcat taaacatata gagattgaag aagctacgct
     2161 gacaggaagt tttgaagcgt attttagagg tactgttttt acagtacttg aaagtgtgag
     2221 aattgaacag tgtaatttgt ctggagtgac gtcttttgac atggcatttt ataattcagg
     2281 aattgaaaaa gttattatta gggataatga ttatccgaca gcaccatctt tactcgctac
     2341 tacgtatatg ttttccttat gtcgtaatct tagtgagctt gatttgagtg gccttgatac
     2401 gagtgctgta actaatatat atggcatgtt tcaaaattgt attagccttg aggagttaga
     2461 tctaagtaat tttgatacca gttccgttac taatatgtat tccacgtttt cgggttgtag
     2521 atcacttgag aaattggatg taagcaactt tgatacgagt tcagttacaa atatgcagtt
     2581 catgtttgaa aaatgtagta gccttgaaga attagatcta agtaattttg atacaagttc
     2641 agtgactact atgtcttaca tgtttcaact ttgtccagcg ttaaaatctt tatatctgga
     2701 taattttacg gatgcagcaa ttatgacagg tatgtttggt ggaaccacct ccctaaccta
     2761 cttgtttgtc agtcacaatt taagtacttt taataactta gaaaatacaa gctggtatga
     2821 tgaaaagaat tgggtgcagt tttcgaatct ctcgcaacta cagacatatc acaggcaaca
     2881 aagcgaacct acaggctaca gaaaaggtgc cttcctttcc ttaacgatgg atgcgatggg
     2941 tgggcagttt gaagacgcgg aagaacaaaa agtacaaaat aaagtttctg gggagtactg
     3001 ggatgagata gttcctgtga aagaaggaca ttattttgac gggtggtacc ttaatcaaga
     3061 ttgtaccaat aagtttgact tttcattgcc cgctgatgca tcaataacta tctacgcaaa
     3121 atggatagaa aactatacag tgattattcc agcttctatt tctttaaatg aaacttctga
     3181 attgaaagtg gaagggatta atcgaggaga taaaaatttg tccgtgggat taaatcgaac
     3241 agcaatgtct gtttctgaaa gcaacaagct aactttagcc aatacggcag acacaacagt
     3301 ccaatgtttg gcaccactga gttgggacgg gtcagaaact aatccagaaa aagcgatttt
     3361 aacccttgcc ccaggttcgg aaataacaga aggcgatgca gtcatggcta ttgaagcacc
     3421 agagaatatc caggcaggaa aatatacagg gaacgttgtg ttttcgatta agtatgaatg
     3481 atgtaaatta accagactag tgattatgtc acagtcctgt ggttatgaat aaattggagg
     3541 ttacctatga agaagaaaag agtagtgatt atatccttac tactattgtt agtaagtgtc
     3601 attggaatca gtagttattt tctattcaag gataaaataa atctgttgga tgtagaccat
     3661 tctgccgttg attggaacgg aaaaaaacag aaggatacaa gtggagaaga aaatacaatt
     3721 gccattccag ggtttgaaaa agtaacgttg tatgcaaatg aaacaacaca agcagtgaat
     3781 ttccataatc cggaaattaa tgattgttac ttcaaaatat cgcttattca tccggatggt
     3841 tcggttctat ggatatctga tttaatcgaa ccgggaaaag gtatgtattc cattgaatta
     3901 gaaaaaacgt tagcggtagg cgaatatgaa aatgcagtat taaaatatga atgtttttct
     3961 ttaaacgatc agtcaccttt aaacgggtct gaaataaatt taaaattagt tgtcgtctag
     4021 acaaaggagg aaatttttta tgaataaatt agtattaagt acgttaagtg tagcagcaat
     4081 gggtatggtg ttttttagcg gagggacagc ctacgctgca gataaagaag gaaatacagt
     4141 agtggaatat tctgttgaag gggattatac cctcgttgta cc
//
LOCUS       DASDXX010000199         4169 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.199, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000199 DASDXX010000000
VERSION     DASDXX010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.199"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            100..1947
                     /locus_tag="U0280_002523"
     CDS             100..1947
                     /locus_tag="U0280_002523"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464375.1"
                     /note="catalyzes the hydrolysis of a monocarboxylic acid
                     amid to form a monocarboxylate and ammonia; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEM2272446.1"
                     /translation="MKRRILLTITAVCTVFSIVGGYVFFTSQQTTTSENKSAVSKKKP
                     PTTKNEKPKQPPNKLTLGKNKENSHLEKNFGGKQLQVEGIDDRAFQSSLKKRTEIKLK
                     PEKAPPKKQDIKPVKPIPSKPEKEEDSSSPIYEKARIMTPINNQLDKLDLAVLEAKEP
                     LIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLTLNAITEINPTIIAEAEQ
                     LDKDNSANKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGEDATIVENLKANGAL
                     ILGKTNMSEWAAGMDEELPNGYSGKKGQSKNPYSSDLDPSGSSSGSATGATSDFAAIA
                     IGTETNGSIIIPASAQSAVGYKPSQGLINNKGIIPLSSRFDTPGPLTRTVNDAYLTTN
                     ALINTTSNPPLSTDSLQGKRIGLLADGESNEETAVIKKIKYDLKKAGAIIIEGVAVGE
                     FEQLDTDYALLLNADFKHDLNQFLNVNNAPMTTLESIIQFNQTNPARNMKYGQSELVK
                     SQQSTTTKLQADSLASNLIQEAQNELDSMLQKDKLDAVVTIGMGGSVTFLAPIAGNPE
                     LTIPAGYDEETNQPISLTFITARNSDTTLLNMGYSYEQQSKNRKSPNLK"
     gene            complement(1995..2723)
                     /locus_tag="U0280_002524"
     CDS             complement(1995..2723)
                     /locus_tag="U0280_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2272447.1"
                     /translation="MTKLKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKST
                     FLRCMNNLEEITAGEVVVDDFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITL
                     APVELKKMDKEAAKSNALRLLEQVGLREKAEEFPNQLSGGQKQRVAIARALAMDPDIM
                     LFDEPTSALDPEMVGEVLGVMKELAKGGMTMMIVTHEMGFAREVGDRVIFMDGGYIVE
                     EGKPADIFDNPTNERTISFLDKVL"
     gene            complement(2716..4158)
                     /locus_tag="U0280_002525"
     CDS             complement(2716..4158)
                     /locus_tag="U0280_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM2272448.1"
                     /translation="MKKFSRFILMMAIACVAAFIFTGNGLNAKAAEETYLIGTDTTFA
                     PFEFEKDGEHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSIT
                     DERKQKFDFSDPYFDSGVVMGILKDNDEIKTYDDLKGKKVAVKTGTEGYAFAEKIKDK
                     YDFDIVVFDDSAQMYDDVKTRNSVACFDDYPVLAYGVQTGNGLKIVTEKEKGNSYGFA
                     VNKGKNQELLEKFNAGLVNIKASGEYDKILENYLGKNAIKENTTEKGFMGIIKSSWPA
                     LLSGLWLTIRLAVVSLIIAFIIGITFGFMKVSNSKILRGIATVYVDIFRGTPLIVQAF
                     FFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGLPH
                     KKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTW
                     TWLIIGIMYLIVITILTKISDRLERRLRND"
BASE COUNT         1372 a          853 c          697 g         1247 t
ORIGIN      
        1 cctttttaaa aaatttttta gttttcacaa aattgtcact gatttacttt ttttgatgct
       61 atataattaa attacatatt taaacatcgg aggaatcgca tgaaaagacg cattttatta
      121 acaatcaccg cagtttgtac agtttttagt atcgtcggtg gctacgtatt ctttacgagt
      181 caacaaacta ctacatcaga aaataaaagt gctgtttcta aaaaaaagcc accaaccaca
      241 aaaaatgaaa aaccaaaaca accaccaaac aaattaacac ttggcaaaaa taaagagaac
      301 tcccatttag aaaaaaactt cggaggtaag caattacaag tcgaaggtat agacgaccga
      361 gctttccaaa gttcgctcaa aaaaagaacc gaaattaaac tgaaaccaga aaaagcacca
      421 ccaaaaaaac aggacattaa accagtaaaa ccaataccaa gcaaaccgga aaaagaagaa
      481 gattcatcta gtcccattta tgaaaaagcg cgtattatga cgccgattaa taatcaatta
      541 gataagttag atttggctgt tcttgaagca aaagaaccac ttatcattgg tgctgatgtt
      601 acaaaactcc aacaactcat tgcgacaaaa caacttagct acaaagaatt agccggtatt
      661 tatttaaatc gaatcaagaa atatgaccaa aatggcctaa ctctaaatgc aataaccgaa
      721 atcaacccca ctattattgc ggaggcagaa caactagata aagataattc agccaacaaa
      781 tctgctttat acggtatgcc agtcctttta aaagataaca tcggcacaaa agaactcccc
      841 acaagtgctg ggactgttgc tttaaaagat tgggtaatcg gggaggacgc tacaattgtt
      901 gaaaatctaa aagcaaatgg tgctttaatt ctcggaaaaa ccaatatgtc tgagtgggca
      961 gctggaatgg acgaagaact tccaaacggc tactcaggta aaaaaggcca aagcaaaaat
     1021 ccttattcgt cggacttgga tccctctggt tcgagttctg gatccgctac tggagcaaca
     1081 agtgattttg cagcaattgc aatcggtaca gaaacaaatg gttcgattat tatacctgcg
     1141 tctgctcaat ctgctgttgg gtataagcca tctcaaggtt taataaataa caaaggtatt
     1201 attcccttat caagcagatt tgatacaccc ggaccactaa caagaactgt taatgatgcc
     1261 tatttgacga caaatgctct aataaatact acttccaatc caccgctttc tacggattct
     1321 cttcaaggta aacgtatcgg tcttttagcg gatggcgaaa gcaatgaaga aacagcagtt
     1381 ataaaaaaaa taaaatatga tttgaaaaaa gcaggtgcta ttatcattga aggtgttgca
     1441 gtaggtgaat ttgaacagtt agatactgat tatgccttat tactaaatgc tgactttaaa
     1501 catgatttga atcagttttt gaatgtgaac aacgctccca tgacgacgtt agaatcaatt
     1561 attcaattta atcagaccaa cccagcgaga aatatgaaat acggccaatc cgaacttgtc
     1621 aaatcacaac aaagcacaac tacgaagcta caagcagaca gtttggcgag taatttgatt
     1681 caggaggcgc aaaacgaact tgactctatg cttcaaaaag ataaactgga tgcggtcgta
     1741 acaattggca tgggaggttc cgtgacgttt ctagcaccca ttgcaggaaa cccagaactg
     1801 actatcccag ctggctatga tgaagaaaca aatcaaccga ttagcttaac ttttattaca
     1861 gctagaaata gtgatacaac cttattaaat atggggtatt cctatgaaca acaatcgaaa
     1921 aacagaaaaa gtcctaattt aaagtaaaaa aagcaagatg cttttggaaa ttccaaagtc
     1981 atcttgcttt ttgtttataa tactttatct aagaaactaa tcgttctttc gttggttggg
     2041 ttatcaaaaa tatcagccgg cttgccttct tcaacaatat agccaccatc cataaagata
     2101 actcggtcgc caacttcacg agcaaaaccc atttcgtgtg taacaatcat catcgtcatg
     2161 ccgcctttag ctaattcttt cataacgcct aaaacttccc ctaccatttc tggatcaagc
     2221 gctgacgttg gctcatcgaa caacataata tcaggatcca ttgcaagtgc tctcgcaatc
     2281 gccacccgtt gtttttgtcc accagacagt tgattaggaa attcttctgc tttttctcgt
     2341 aagccaactt gttctaataa acgtaaagca ttacttttcg cggcttcttt atccattttt
     2401 ttcaattcaa caggtgctaa tgtgatattt tctaaaacag acaaatgcgg gaaaagatta
     2461 aaatgttgga aaaccatgcc gatattttcg cgaactttat tgatgtccac ttttttatcc
     2521 gtaatattaa aatcatcgac cactacttcg ccagcagtaa tttcttccaa gttattcata
     2581 caacgaagaa atgtactttt accagatcca gaaggtccga tgacacaaac tacttcgcct
     2641 tcttttactt ctatatcaat gccttttaag acttcatttg cgccaaaact ctttttcagt
     2701 ccagttactt taagtttagt catttcgtaa tctcctttct aaacgatcgg atattttcgt
     2761 taaaatggta ataacgataa ggtacataat tccgatgatt agccatgtcc aagtactttc
     2821 gaatgtacgc gccataatga ttttacccga ttgtgttagt tcgacgagtc caatggccga
     2881 cataattgat gtatctttaa gcgtgataac aaattggtta ataaaggatg gaatcatcat
     2941 tcgaattgct tgcggtagaa caactttcat catagctttt ttatgtggta aaccaagact
     3001 tcttgctgct tccatttgtc ctttgtcgac tgattgaata ccaccgcgaa cgatttcgac
     3061 catgtaggca ccggcgttca agcttagcgc gataaccccg gctaagaata caggcatcct
     3121 gaaatcaagt gctgctggaa taccaaagta gaagaagaat gcttgtacaa ttaatggtgt
     3181 tccacggaag atatcgacat aaacagtcgc aatcccgcgc aagattttgc tattgctcac
     3241 tttcataaat ccgaatgtaa tcccaataat gaaggcgatt attagcgaaa ctacggctaa
     3301 tctaatcgtc aaccacaaac cggataatag tgctggccaa gaagatttaa taattcccat
     3361 aaagcctttt tcagttgtat tttctttaat cgcattttta cctaagtagt tttctaaaat
     3421 tttatcatat tcgccgcttg ctttaatatt aactaatcca gcattgaatt tctctaaaag
     3481 ttcttgattt ttgcctttgt tgacagcaaa accataggag tttccttttt ctttctcagt
     3541 aacaattttt aaaccgttac ctgtttgaac gccgtaagct agtacgggat aatcatcaaa
     3601 acatgctaca gaatttcttg ttttaacatc gtcatacatt tgagctgagt catcaaacac
     3661 aacgatatca aagtcgtatt tatctttgat tttttctgcg aaggcgtaac cttctgtacc
     3721 tgttttaaca gctacttttt ttccttttaa gtcgtcgtaa gttttgattt cgtcgttatc
     3781 tttcaaaatc cccataacga caccagaatc aaagtatgga tcggagaaat caaacttttg
     3841 cttacgttcg tctgtaatac tcatcccagc gataacaccg tctacttggt tagcttctag
     3901 tgcttgtacc gctgcattga atcccattgc tttaatttca tatttaaaat tttggtcttt
     3961 tgcaattgct tttaggatgt ccatatcaat tccgacatgt tctccatctt tctcaaattc
     4021 aaaaggtgca aaggttgtgt ctgtaccaat caagtaagtt tcttccgcag cttttgcatt
     4081 taacccgttt cctgtgaaaa taaatgcggc aacacaagcg attgccatca ttagtatgaa
     4141 gcgtgaaaat ttcttcatat tgtgtcctc
//
LOCUS       DASDXX010000200         4139 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.200, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000200 DASDXX010000000
VERSION     DASDXX010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.200"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..965)
                     /locus_tag="U0280_002526"
     CDS             complement(<1..965)
                     /locus_tag="U0280_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase
                     membrane domain-containing protein"
                     /protein_id="HEM2272449.1"
                     /translation="MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFI
                     LRVIGVPGITDANLGEVFSSPVAVIMLLILALLILLFIYYELGFFIMMAIYQLRGESY
                     TVFKIIQRLNVKAKYFLSYQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
                     KTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLL
                     KWVLIIVAIGFLVSIIATIMMLPLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQ
                     GIIAQLLVKNAFAIEGQPALVTRNQFPHKKRFIIVAIIVFIIFSS"
     gene            1072..1314
                     /locus_tag="U0280_002527"
     CDS             1072..1314
                     /locus_tag="U0280_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272450.1"
                     /translation="MHPIEQLLANNNTTTTDVESNTRLKEGSLQKIIDKDIRTSDISL
                     RILSQIAIFLNTGADIIAKQLSDIEVVNDLVFLIED"
     gene            complement(1311..1844)
                     /locus_tag="U0280_002528"
     CDS             complement(1311..1844)
                     /locus_tag="U0280_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272451.1"
                     /translation="MEIRELKNGQIIMIREATKEDSSNIITYLNEVAGETDYLSFGQG
                     EFAFSIAEEAEYIEENDKNPGSVMLLCFIDDELASISQLMGHMKKRELHTSELAISIR
                     KKYWGLGIGTICMGELIKYAKSSEYLKLIYLEAVSENKRAINLYKKFGFIEAGEIPAL
                     MQVDSRYLDVTMMYLVI"
     gene            complement(1939..2880)
                     /locus_tag="U0280_002529"
     CDS             complement(1939..2880)
                     /locus_tag="U0280_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEM2272452.1"
                     /translation="MKAVVIENYGGKEELKEKEVAMPKAGKNQVIVKEAATSINPIDW
                     KLREGYLKQMMDWEFPIILGWDVAGVISEVGEGVTDWKVGDEVFARPETTRFGTYAEY
                     TAVDDHLLAPLPEGISFDEAASIPLAGLTAWQALFDHAKLQKGEKVLIHAGAGGVGTL
                     AIQLAKHAGAEVITTASAKNHELLKSLGADQVIDYKEVNFKDVLSDIDVVFDTMGGQI
                     ETDSYDVLKEGTGRLVSIVGISNEERAKEKNVTATGIWLQPNGEQLKELGKLLANKTV
                     KPIVGATFPFSEKGVFDAHALSETHHAVGKIVISFNK"
     gene            complement(2883..3332)
                     /locus_tag="U0280_002530"
     CDS             complement(2883..3332)
                     /locus_tag="U0280_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2272453.1"
                     /translation="MGVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEIL
                     FHIQQTPGQSQNRLREKLYIDSASITRHLKRMEAQGLIVRKKQDENKRYTYLFLTSAG
                     EAELATLLLEKEKFQNGALEAFSEEEVSALLKSVTKMMNNVEKMEEK"
     gene            3501..4127
                     /locus_tag="U0280_002531"
     CDS             3501..4127
                     /locus_tag="U0280_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HEM2272454.1"
                     /translation="MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDL
                     FEADLPYYDVTMMSGLHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNF
                     SIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSL
                     SYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF"
BASE COUNT         1308 a          849 c          645 g         1337 t
ORIGIN      
        1 aaactactaa aaataatgaa aacgattatc gctacaataa taaatcgctt tttatgcggg
       61 aactggttgc gcgtcacaag tgctggttgt ccttctatag caaaggcgtt cttcactaat
      121 aattgcgcaa tgattccttg aaaaattcca gcggcaaaga aacctatcac ttgtagtatg
      181 gttaaagtaa tacccgctat aaacaccgca attcccggag ttattttttc tattaagaga
      241 agcggcaaca tcataatcgt tgcgataatc gatactaaaa agccaatcgc aacaattatt
      301 aaaacccatt ttagtaacat gaaaaataag tttttttgcg ggtatttcca actttttcgg
      361 atagccccac ttatttttag tgatttgtct tcaatgaaat agggcaaagc aaacacaagt
      421 ctggcgctaa tatagaaaat aatcgcaatt gcaataacat acagccacgt tcccgtcgtc
      481 gttttcatta attcatccgt aataaaatgt ggtaaataga ggttttctgt tatcgtaatt
      541 ggtaaagata atcctgcaat gggcaaaagt aaaaagaaat atagcagaaa ataaattgct
      601 tgataactaa gaaagtattt cgcttttaca ttgagtcttt gtatgatttt gaaaacggta
      661 tagctttctc cccgcaattg ataaattgcc atcattataa agaaacccag ttcataatat
      721 ataaacagta aaatgagtaa agctaaaatc agcagcataa taacggcaac aggactcgaa
      781 aaaacttctc caagattggc gtctgtaatt cctggcactc cgatgactcg gagaataaag
      841 aaaaagaaat aataaataaa tggccccatc acaaatgcct gtaagattgt taataataag
      901 gttactttga gataatctgt cttaaactga tacaatactt taaaaatgtc ttttaaatca
      961 ttcatttgct tctccctttt ttgtttaatt ttcaaggctt tatagtttat ccaagaagca
     1021 aatttagtta taattaattc ataaagttaa ctattgaaac gaggtgaaat gatgcatccg
     1081 attgaacaat tgttagcaaa taataacact actaccactg atgttgaatc caatactcgc
     1141 ttaaaagaag gctctttaca gaaaattatt gacaaagata ttcgtacttc tgacattagc
     1201 cttcgtattc ttagtcaaat tgctattttt cttaacactg gagccgatat tatcgcgaag
     1261 caacttagtg atatagaagt agttaatgat ctagtctttc ttattgaaga ctaaataacc
     1321 aaatacatca tggttacatc taaataacgg ctgtccactt gcattaacgc tggaatttca
     1381 ccagcttcga taaatccaaa ttttttgtac aaattaattg cgcgtttatt ctctgataca
     1441 gcttctaaat agataagctt taaatactcg ctacttttag cgtattttat taattcaccc
     1501 atgcaaattg tgccaatacc cagaccccaa tatttcttcc gtatcgaaat agctagttca
     1561 gaagtatgta attctcgctt tttcatatgc cccataagtt gagaaatact cgcaagttca
     1621 tcatcaataa aacataacaa cataacagag cctgggttct tatcattttc ttctatgtat
     1681 tcagcttctt ccgctatact aaacgcaaac tcaccttgac caaatgataa ataatctgtc
     1741 tcaccagcta cttcatttaa ataagtaata atattactag agtcctcttt tgtagcttcc
     1801 cgaatcatta ttatttgccc attcttcaat tctcttattt ccatctagac accacctttt
     1861 ttgctattat agcccatcta acttattcca gcaaacaaca aaaaaagcta gatgatagca
     1921 tctagctttc cgaaaatctt atttattaaa tgaaatgact atttttccaa ccgcgtggtg
     1981 cgtttcgctt aatgcatgtg catcaaaaac acctttttca gagaatggga aagttgcgcc
     2041 gacgattggt ttaaccgttt tattagcaag caatttgcca agttctttca gctgttcgcc
     2101 gtttggttgc aaccaaattc cagttgctgt tacatttttt tctttcgcac gttcttcatt
     2161 tgaaataccg acgatactaa ctaaacgccc tgtgccttct tttaatacgt cataactatc
     2221 tgtttcgatt tgaccaccca ttgtatcgaa caccacatca atatcagaaa gaacatcttt
     2281 aaaattaact tctttataat caatgacttg gtctgcgcca agagatttta gtaattcatg
     2341 gtttttcgca ctagctgttg tgattacttc tgctcctgca tgtttggcaa gctgaatcgc
     2401 caacgtccca acaccaccag caccagcatg aatcaagact ttttcacctt tttgtaattt
     2461 cgcgtgatcg aacaatgctt gccaagcagt taagcctgca agtggaatcg atgctgcttc
     2521 gtcaaaacta attccttctg gaagtggtgc aagcaagtga tcatctaccg ctgtatattc
     2581 agcatacgta ccaaaacgcg ttgtctcagg gcgtgcgaat acttcatcgc cgactttcca
     2641 atctgttacg ccttctccaa cttcggaaat aacacccgct acatcccatc ctaaaataat
     2701 cgggaattcc cagtccatca tttgttttaa gtatccttca cgaagtttcc aatcaattgg
     2761 gttaattgat gtcgctgctt ctttgacaat cacttgattt ttacccgctt ttggcatagc
     2821 tacttctttt tcttttaatt cttctttgcc accataattt tcaattacaa ctgctttcat
     2881 ttttacttct cctccatttt ctctacatta ttcatcattt ttgtgactga tttaagtaac
     2941 gcactaactt cttcttctga aaaggcttct agcgccccgt tctgaaattt ttctttttcc
     3001 aaaagtaaag tggctaattc cgcctcaccc gctgatgtta aaaataaata cgtatagcgt
     3061 ttgttttcat cttgcttttt ccgaacaatc agcccttgcg cttccattcg cttcaaatga
     3121 cgggtaatac ttgccgaatc aatataaagc ttctctcgta gtcgattttg actttgacct
     3181 ggtgtttgtt gaatatgaaa tagaatctct actttcgtaa aactcatatt cgtttgttgt
     3241 tcaaatacat ggctaatttc cttggataat aagtgcatcc ggtaaagtaa ttcagatcgt
     3301 tctgtacatg gtttcagcgt tttcaccccc atagttgata cgtcaaatga tatatcaact
     3361 attatacgct tcctttccaa aagcacaaaa tatctgctca aacattagcg gctaattttt
     3421 tgtaagcaat atacttgctg tttatcgtga aaatgggcta cacttaatag ataattcaaa
     3481 aaaaatggag gcaagatgta atgacaaacg tacttttcat caaagcaaat ggtttacctg
     3541 ccgaacgctc agtcagcgtg gcactatatg aaatctttct aacggaatac aaaaagtccc
     3601 atccggacga taatgtaaca gaacttgatt tatttgaagc ggatctacct tattatgatg
     3661 taacaatgat gagtggatta cataaagaag cagctggaga aacactaagc ccagaagaaa
     3721 aacgcttagc tgatattgct aacagctact tagatcaatt tttagctgca gacaaaatcg
     3781 tcatggcgtt cccactttgg aacttcagta tcccagccca atttttaaca tacttattct
     3841 atttaaatca agctggcaaa acatttaaat acactgcaaa cggccctgta ggtttagttg
     3901 ctgataaaaa aattgccctg cttaatgctc gcggtggcat ttactctgac ggaccaatgc
     3961 aaagcttcga aatgtccctg agctatgtaa aaaatgtgtt agctcacttc ggtatctctg
     4021 agccagaaat ggttatcgta gaaggtcata acgcaaaacc tgatcaagca aaagacatta
     4081 tctctgcagg agcaaaagaa gcagtagaat tagctaaaat cttttaataa aaaaaccgt
//
LOCUS       DASDXX010000201         4077 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.201, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000201 DASDXX010000000
VERSION     DASDXX010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.201"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            57..1133
                     /locus_tag="U0280_002532"
     CDS             57..1133
                     /locus_tag="U0280_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272455.1"
                     /translation="MKKAIMAATIFVLLLATLSGCSSPKSDFTAALQKTAENRQYTTN
                     VTFQVNNLSESYIKKLGPEIDLNQLKKSNIQYKISVDSDSASSYSASSIHWKGKKPLD
                     LTIHALQNSDDGKAYIPVSDFYDASDSISSLLPDSAARIFNQVLDQNKDLESKYLNLF
                     ETIQNFSNQTIDTETVDRQAKVLKKMEETAGIAIYSYLNDLDDQHFTSKDNGDIVLKL
                     SKNEISDLVNSVITKLDDNGSVVALIGEIDGSTQKAAKKKWNNAQKSIQSSLKALTEN
                     KAQTLDFKLTLTPDSKKGFSKAIITTNFEDTKTKDLMDFTTTIDMLDYEKVPPMPKGK
                     EIVSKKELDKAISDGLKLYLSSAQ"
     gene            complement(1175..2005)
                     /locus_tag="U0280_002533"
     CDS             complement(1175..2005)
                     /locus_tag="U0280_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2272456.1"
                     /translation="MKKVLGFIFTLSLVLVLTACGGSSDKASSSKDDNQLVVGASNTP
                     HAQILEQAKPILKDKGIDLKIVKYTDYVMPNKALEEGDLDANYFQHKPYLELEEKEKG
                     YKFADVGAIHIEPMGIYSKKVKDIKDLKDGAQVLLSNSKSDWPRVIGIFVDNGLLTLK
                     DGVKPQDATFDDIKDNPKNLKFKYDFDPAYLMTAYNNEEGDVVAINSNFVVDQGLNPS
                     KDAIAIESKDSPYANIVVTTEKKKDDKNIKELVKVLHSKEIQDYITKEWDGAVVPVDK
                     "
     gene            complement(2070..2744)
                     /locus_tag="U0280_002534"
     CDS             complement(2070..2744)
                     /locus_tag="U0280_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272457.1"
                     /translation="MTKLQELFPNVDFQMMWVATQETLYMTLVSLFAVFLLGIVLGLL
                     LFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGTVIGPKAALPA
                     LIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVT
                     AISLVGFTAMAGVIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGDFLT
                     KRTDKR"
     gene            complement(2741..3763)
                     /locus_tag="U0280_002535"
     CDS             complement(2741..3763)
                     /locus_tag="U0280_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM2272458.1"
                     /translation="MITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGK
                     STLIRMFNGLELPSAGTVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAEN
                     IAFPLEIAGVRGEKRRFRVNELIRLVGLEGKENAYPSELSGGQKQRVGIARALANNPK
                     VLLCDEATSALDPQTTDEVLELLLDINKRLHLTIIVITHEMHVIRKICNRVAVMENGK
                     VVELGDVLDVFRHPQEKVTQRFVRQVTDSDETEELIHLLLDNYAEGKIVKLLFMSENA
                     TQPVISQVAKENDVMLNVLHGNLTQTQNGAYGTLYVQVLGTEDAINASLTQLRQLKVE
                     TEVLER"
     regulatory      complement(3853..3971)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
BASE COUNT         1273 a          809 c          699 g         1296 t
ORIGIN      
        1 gcaacataat aacttttttg taataaacga ttacttattg aaggagaatt taaaatatga
       61 agaaagcaat aatggctgcg accatctttg tattgctttt agccacgtta tccgggtgta
      121 gctcccctaa atctgacttc actgccgcct tgcaaaaaac agctgaaaac cgacaatata
      181 caacaaatgt gacattccaa gtaaataacc tctcagaaag ttacataaaa aaacttggtc
      241 ctgaaatcga cttaaatcaa cttaaaaaat cgaacatcca atataaaatt tctgttgata
      301 gtgattccgc atcttcctac agcgcatctt ctattcactg gaaaggaaaa aaaccacttg
      361 atttaacaat acatgcactt caaaacagcg atgacggaaa agcttatatt cctgtatctg
      421 atttctacga cgcttctgat agcatctcca gtttattacc ggattcagca gctagaattt
      481 tcaaccaggt actagatcaa aacaaagact tggagtcgaa gtatttaaac ctattcgaaa
      541 caattcaaaa tttttccaat caaacaattg atacagaaac tgtagaccgc caagcaaaag
      601 tattgaaaaa aatggaagaa actgccggca ttgcgattta tagttatcta aacgacctag
      661 atgaccaaca cttcacttca aaagataatg gtgacatcgt cctaaaatta tctaaaaacg
      721 agattagcga tttagttaat tccgttatca ccaaacttga tgataacgga agtgttgtag
      781 cacttattgg agaaattgac ggtagcactc aaaaagcagc aaagaaaaaa tggaacaatg
      841 ctcaaaaaag tatccaatca tccttaaaag ctctaacaga aaacaaagca caaacattag
      901 atttcaaatt aacattaact cctgacagca aaaaaggatt tagtaaagcg attatcacta
      961 ctaattttga agataccaaa acaaaagact taatggactt cacaacaacg attgatatgc
     1021 tagactacga aaaagttcct ccaatgccaa aaggaaaaga aattgtatcc aaaaaagaat
     1081 tagataaagc catttccgat ggactgaaat tatatttaag tagcgctcaa taaaaaaatc
     1141 cttttaccga aacggtaaaa ggattttttc tattttattt atccactgga acaacagcgc
     1201 cgtcccattc tttcgtaatg taatcttgaa tttcttttga atgaagtact tttactagct
     1261 ctttaatgtt tttatcatct tttttctttt ctgttgttac aacgatattc gcataaggag
     1321 agtctttact ttcgattgca atagcgtctt tagaagggtt taagccttga tctacaacaa
     1381 agttagagtt aatcgctaca acgtcgcctt cttcgttatt gtaggcagtc atcaagtaag
     1441 ctggatcaaa atcgtatttg aatttcaagt ttttcggatt gtctttaata tcatcaaaag
     1501 ttgcatcttg tggtttcacg ccatctttca gcgttaatag tccgttatcc acaaaaatac
     1561 caataacacg cggccaatca gattttgagt tagaaagtaa aacttgcgcg ccgtctttta
     1621 gatctttaat gtctttaact tttttagagt agatacccat tggttcgatg tgaatcgcgc
     1681 caacatcagc aaatttgtag cctttttctt tttcttctag ttcaagatat ggtttatgtt
     1741 ggaagtagtt agcatctaaa tcgccttctt ctagcgcttt attaggcata acgtaatctg
     1801 tatatttaac aattttcaag tcaatccctt tatctttcaa gattggtttt gcttgttcta
     1861 agatttgggc atgtggtgta ttggacgcac ccactaccaa ttggttatcg tctttactag
     1921 atgaagcttt atctgaggag ccaccgcaag ctgtaagtac taaaactaaa cttaatgtga
     1981 aaatgaaacc aagaaccttt ttcatgaaat tctctccttt tttgcgggga ttccgcgttt
     2041 ttttatataa atttcttcat atacattggt tagcgtttgt cggttcgttt tgttaagaag
     2101 tcgccgataa actggaaaat aaagacgata attaagataa taattgtcgc aagtactgtt
     2161 acatcaggtt gtccacgttg gaacccttca agataggcag tattcccaag accgcctgcg
     2221 ccaatgacac cagccatcgc ggtaaaacca acgagcgaaa ttgctgtcac tgtgataccg
     2281 gaaataatcg ctggtaaggc ttctgggatg agcactttac caataatggt aaacatgttc
     2341 gcgcccatag atttggctgc ttcaataact cctttgtcca cttcacgaaa ggcaatttct
     2401 accatccgac cataaaacgg agcagcagag ataatcaaag ctggaagtgc cgctttcggc
     2461 ccaattacag ttccgacaag cgattttgtc atcggtaata gtaatacaat taaaataata
     2521 aaaggaatcg agcggaacac attgactaaa atggctgtaa tccagtaaag aatgcgcgct
     2581 ccggcatgtt ttttattgtt agttaaaaat agtaataatc ctaacacaat cccgagtaaa
     2641 aaaaccgcaa ataatgaaac aagcgtcatg tataatgttt cttgtgttgc gacccacatc
     2701 atttgaaaat caacatttgg aaataattct tgtaatttcg tcatcgttct aacacttccg
     2761 tttctacttt aagttgacgt agctgtgtta gactcgcatt tatcgcatct tctgtaccta
     2821 aaacttgtac ataaagcgtt ccgtatgcgc cattttgcgt ttgcgttaag ttcccgtgga
     2881 gaacatttag cataacatca ttttcttttg ctacttgaga aatgactggt tgagttgcat
     2941 tttcgctcat aaagagtaat ttaacaattt ttccttctgc ataattatcg agtaatagat
     3001 ggattaattc ttctgtttcg tctgaatcgg taacttggcg gacgaagcgc tgcgttactt
     3061 tttcttgtgg gtgacggaaa acatctaaaa catcgccgag ttcaacaact tttccgtttt
     3121 ccattactgc gacgcgatta catattttcc ggataacgtg catttcatgg gtgataacga
     3181 tgatagttaa atggaggcgt ttgttaatat ctaggaggag ttctaaaact tcatcggtag
     3241 tttgtggatc tagtgcggaa gttgcttcat cacaaagcaa tacttttggg ttgttcgcca
     3301 gcgctcttgc gataccgaca cgctgctttt gaccgccgct tagctcagat ggataggcat
     3361 tttcttttcc ttccaagcca acaaggcgga tgagttcatt tactcgaaag cgtctttttt
     3421 caccgcgaac acctgcaatt tctaatggaa acgcaatatt ttctgccaca gtgcgggacc
     3481 ataataaatt aaaatgttga aaaatcattc caatttgctg acgagctttt ctgagtttac
     3541 tgccacgaat ctggctaatg agtagattat ctacttcaac cgttccagca cttggtagtt
     3601 ccagtccgtt aaacatccgg attagcgtac ttttaccagc tccagaatat ccaactactc
     3661 caaaaatctc gccttgttca atttctaaat cgacatgatc gactgcgaga actttattgt
     3721 ttctggacgt gtattctttt acaacgtttt gtaacgtaat catctctatc accttttcta
     3781 cattctgata tacaaaaaag cctttctgct gatgagcaga aaggcagcat tttttcaaat
     3841 ggactaactt ccttctcatc tttcagaaca attagttgtt ctgcatgact tagcacctta
     3901 aacacataat gaattattgt ttaggttgct gggtttcaca gggcatttcc ctccaccact
     3961 ctggataaga tttctacata ttattaaatc acttcatttg tgactatagt gacgtttctt
     4021 gttttttcat attaccttgt ctagtagact ttgtcaataa ctttctcact tatgtta
//
LOCUS       DASDXX010000202         4064 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.202, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000202 DASDXX010000000
VERSION     DASDXX010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.202"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            55..597
                     /locus_tag="U0280_002536"
     CDS             55..597
                     /locus_tag="U0280_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1269 domain-containing protein"
                     /protein_id="HEM2272459.1"
                     /translation="MKKEKTVLIMNFDEESISYQAFSEMKRLHQERKIIGYQMAVVKH
                     EPGNKLVAQDFLDFTGADKNMKDSLIGMLIGILGGPFGILIGWMVGAIVGSMRDAGEV
                     KDALNVFERTLKTIPEGSTGVILIATEQELANVNDVAMDELHGRVQRMDEAIVAQEIK
                     SAQETEGKAKDSAKKHWFSK"
     gene            824..1624
                     /locus_tag="U0280_002537"
     CDS             824..1624
                     /locus_tag="U0280_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM2272460.1"
                     /translation="MDVESSPLMQKIDYSTRKKIDLVNNSILRYIVRAMLACLFLTLG
                     TAVAVMIGDKVDHFAPGLGKITYAFMFSWSLVMIIYMNAELGTSNMMYMTTGVYQKIV
                     KPGKALQILLLCIVCNLLGGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKAPLQIF
                     VEGIFANIVVNTAVLCTLRMKDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFA
                     SGGTLAAMTAGNVTVNLVLALLGNFVGGGLVIGLGYAWLNRTKSIYKD"
     gene            complement(1662..2768)
                     /gene="metX"
                     /locus_tag="U0280_002538"
     CDS             complement(1662..2768)
                     /gene="metX"
                     /locus_tag="U0280_002538"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEM2272461.1"
                     /translation="MTLQQKELFQKSPLLLENGETLSPVLVGYETYGTLSASRDNCIL
                     LEHALTGTAHAAKHFESDAPGWWDDYIGPGKTIDTDKYFLVCTNVFGGCSGTTGPSSI
                     NPKTGEPFRLQFPGFSIKDIIKVQRELLEQLGVTRIVSVIGGSMGGMQATEWAIDYAD
                     ITDSIINIASPLAAGPDAIGYNLIMRMAILNDPDFNGGNYVGQPEGGLATARMVGMMT
                     YRTSELFSKRFERFTVAESSPAAFSKEHFQIESYLQYQGDTFVERFDANSYLYLTKAI
                     DLFDVTAPAKDDLPAFAKIKIPYLLIGITTDQLFRIHDLRRGYELLKEWDVPVTYHEV
                     ASEYGHDAFLVEKEVPKFEPLIRSFLSNLPVKSI"
     gene            complement(2785..4062)
                     /locus_tag="U0280_002539"
     CDS             complement(2785..4062)
                     /locus_tag="U0280_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEM2272462.1"
                     /translation="MSNEYKFETIQVHGGHTPDGDTHSRAVPIYQTTSYTFDSPEHAA
                     ALFGLQETGNIYTRIMNPTTAVLEERLTLLEGGIGAVATASGMAAITYSILNIAGSGD
                     HIVAAATLYGGTHTLFSHTFKTFGIDVTFVDPNEPENFEKAIKDNTKAVFIETIGNPD
                     INIVDIEKVAEIAHASDIPLIVDNTFATAYLNRPFDFGADIVVYSATKFIGGHGVAIG
                     GAVIDSGKFNWANGKFPKLVVPDDSYNGLSYTNDVGAAAYITKLRVSLLRDTGAALSP
                     FNAFLLILGLETLSLRLEQHVKNAKQVANFLNDHPKVAWVNYPGLSDNKYHELAQKYL
                     PKGPGSIFTFGVKGGYEAGKKVIESVELFSHLANVGDAKSLIIHPASTTHQQLSEEQQ
                     LTAGVKPESIRLSIGIENADDIIQDLTKALEQI"
BASE COUNT         1217 a          779 c          839 g         1229 t
ORIGIN      
        1 tacgataaat agtatctgaa tataatactt tatgaggcga gaggggtaca acagatgaaa
       61 aaagaaaaaa cagtgttaat tatgaatttc gatgaagaaa gcatttctta ccaagctttt
      121 tctgaaatga aaagattaca ccaagaacgc aaaatcattg gttatcaaat ggcggttgta
      181 aaacatgagc caggaaataa acttgttgca caagattttc ttgattttac tggtgccgat
      241 aaaaatatga aagatagcct tattggtatg ttaattggta ttttaggcgg tccatttggt
      301 attttaattg gttggatggt cggcgcaatc gttggttcca tgcgagatgc tggcgaagtg
      361 aaagatgctt taaatgtatt tgaaagaaca ttaaaaacaa ttccagaagg ttctacaggt
      421 gtcatcctta ttgcgacaga acaagaatta gcaaatgtaa acgacgtagc aatggatgag
      481 ttacacgggc gtgtgcaacg tatggatgaa gctatcgtag ctcaagaaat caaaagcgca
      541 caagaaacag aaggaaaagc aaaagattct gctaaaaaac attggtttag taaataaaaa
      601 tatttcaaac gaggacagag aaatctgttc tcgttttttg tgttttaaga gtgtgaaaac
      661 ggggaaatta acaacataaa acacccagat agaaaaaaat tcaagatggt aacgcttaac
      721 tcatttttat tttctgaaaa ctatttgcat caaattaaaa acatgctaca ataaacaagt
      781 tgtgaatttc acaagaaaat tttttgtttg gagatgaaat aatttggatg tggaaagtag
      841 tccattaatg cagaaaattg attatagtac gcgcaaaaaa attgatttag taaataatag
      901 tattcttcgt tatatcgtgc gcgcgatgtt agcatgttta ttcttgacac tagggactgc
      961 ggtcgctgta atgattggtg ataaagttga tcatttcgct ccaggacttg gtaaaatcac
     1021 gtatgcattt atgtttagtt ggtcgctcgt tatgattatt tatatgaatg ctgagcttgg
     1081 tacttctaac atgatgtata tgacaactgg tgtttatcaa aaaattgtta aaccaggaaa
     1141 agcattacaa attttgcttt tatgtattgt ttgtaattta ttgggtggaa ttcttgccgg
     1201 gtacttagtt tccctaacat ccgttttcca taatttacct gctgaccatt tcttatttac
     1261 tgctgttagc ggtaagcttg aaaaagcgcc actacaaatt tttgtagaag gtattttcgc
     1321 caatattgtt gtaaatacgg ccgtgctttg tacacttcga atgaaagatg atgctggtaa
     1381 agtcattgcg atgattttca ttattttcat ctttgcattc ttaggatttg agcacgttat
     1441 cgccaacttc tcctctttct cattagcatt tttcgcttct ggtggaacac ttgctgcaat
     1501 gacagcgggc aatgtgaccg tcaatttagt acttgcttta cttgggaatt ttgtaggtgg
     1561 aggccttgtt atcggactcg gctatgcttg gcttaaccga acgaaatcaa tttataaaga
     1621 ctaattaaag gagaccccgg aaattttccg aggtctcttt tttatatact tttaacaggt
     1681 aaattactta aaaatgaccg aatgagcggt tcgaatttcg gcacttcttt ttcaactaga
     1741 aaagcgtcat gaccgtattc ggaggccact tcatgataag taaccggcac atcccattct
     1801 tttaaaagct cgtaaccgcg gcgcaaatca tgaattcgga aaagttgatc tgtcgtgatg
     1861 ccaatgagca aatacggaat tttaattttc gcaaaggcag gcaaatcgtc tttcgcggga
     1921 gcagtaacat cgaataaatc aattgccttt gttaaatata agtagctatt cgcgtcaaat
     1981 cgctcgacaa aagtatcccc ttgatattgc aaatacgatt caatttgaaa atgctctttt
     2041 gagaaagcgg caggagaaga ctcggcgaca gtgaaacgtt caaagcgttt cgagaaaagt
     2101 tcgctcgtcc ggtaagtcat catcccaacc attcgcgcag tagcaagtcc gccctcaggt
     2161 tgaccaacat agttgccccc attaaagtca gggtcgttca aaattgccat gcgcataatc
     2221 aagttgtaac caatcgcatc aggtccagca gcgagcgggg aggcgatatt gataatgcta
     2281 tccgtgatat cggcataatc aatcgcccat tccgtcgcct gcataccacc catcgatccg
     2341 ccaatcactg aaacaattcg cgtaacccca agttgctcca aaagttcacg ctgcacttta
     2401 ataatatctt taatcgaaaa acctggaaac tgtaagcgga aaggctcgcc agtttttgga
     2461 ttaatcgaag aaggtccagt cgtgccacta caaccaccaa atacattggt gcaaaccaga
     2521 aaatatttgt ctgtatcaat cgttttcccc ggaccaatat aatcatccca ccaaccagga
     2581 gcgtcactct caaaatgttt cgccgcatgt gccgtcccag taagggcgtg ttctaataaa
     2641 atgcaattat cgcgtgaggc ggaaagtgtc ccgtatgttt catagccgac taaaacaggg
     2701 cttaatgttt ctccattttc aagtagaaga ggactttttt gaaatagttc tttttgttgt
     2761 aaggtcactt ctcttcactt cctcctaaat ttgctctaat gctttcgtta aatcttggat
     2821 aatatcatcg gcattttcga ttccgataga taggcgaatg gactctggtt tcacgccagc
     2881 tgttaattgt tgttcttcgc ttagttgttg atgggtcgtg gaagctggat ggatgataag
     2941 cgattttgcg tcgccaacat tcgctaaatg cgagaataat tccacggatt caatcacttt
     3001 tttaccagcc tcgtagccac ctttaactcc aaatgtgaaa atggagccag gtccttttgg
     3061 taaatatttt tgggctaatt cgtggtattt gttgtcgctc aaacctggat aattcaccca
     3121 agctactttt ggatggtcat ttaagaaatt ggcaacttgt ttcgcatttt tcacgtgttg
     3181 ctcaaggcgt aaggatagtg tttctaggcc taaaatgagt aagaaggcgt tgaacggaga
     3241 aagtgctgcg ccagtatcac gaaggagtga gacgcgtagt ttggtaatat aagccgccgc
     3301 gccaacgtca tttgtataag acaaaccatt gtagctatca tctggtacca ctagctttgg
     3361 aaatttgcca tttgcccagt taaatttacc tgagtcaata accgcaccac caattgcaac
     3421 cccgtgacca ccaatgaatt ttgttgccga gtaaacgacg atatctgcgc caaaatcaaa
     3481 cgggcgattc aaataagcgg tcgcgaatgt gttgtcaacg atgagcggga tatcggatgc
     3541 gtgcgcaatt tctgctactt tttcgatatc gacaatatta atatcaggat tcccaattgt
     3601 ttctataaaa acagctttcg tattatcttt aatcgctttt tcaaaatttt caggttcatt
     3661 agggtcaaca aacgttacgt caatcccaaa agttttaaac gtatgggaaa atagcgtgtg
     3721 cgttccgcca tagagtgttg cggctgcgac gatatgatct ccggaacccg caatatttaa
     3781 aatagagtaa gtaatagcag ccatcccaga agccgttgca accgcaccaa taccgccttc
     3841 aagtagcgtt aaccgttctt ctaaaacagc tgtagtcgga ttcataattc gtgtataaat
     3901 atttccagtt tcttgtaaac caaataaggc tgcggcatgt tccgggctat caaatgtgta
     3961 tgacgtcgtt tgataaattg gtacggctct agaatgcgta tctccgtccg gggtgtgtcc
     4021 gccgtgtact tgaattgttt cgaatttata ctcattactc ataa
//
LOCUS       DASDXX010000203         4031 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.203, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000203 DASDXX010000000
VERSION     DASDXX010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.203"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            13..1020
                     /gene="ccpA"
                     /locus_tag="U0280_002540"
     CDS             13..1020
                     /gene="ccpA"
                     /locus_tag="U0280_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HEM2272463.1"
                     /translation="MNVTIYDVAREANVSMATVSRVVNGNPNVKPVTRKKVLDVINQL
                     GYRPNAVARGLASKRTTTVGVIIPDISNVFYAELARGIEDIATMYKYNIILSNSDENE
                     DKELQVLNTLLGKQVDGIIYMGERISEQLQEEFDRSPAPVVLAGAVDMENKFASVNID
                     YKQATKEAVKRFVDNGHKQIAFVSGSLNEPVNREMKLAGYKEALEEAGISYQEDYIIE
                     AKYNYNAGVKVWAELSALSKKPNAVVVADDELAIGILNAALDAGIKVPEDLEVMTSNN
                     TKLTLMSRPQLSTIVQPLYDIGAVAMRLLTKLMTSEEVDEKTVILPHSEKLRGTTKEK
                     K"
     misc_binding    1074..1282
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            1342..2601
                     /locus_tag="U0280_002541"
     CDS             1342..2601
                     /locus_tag="U0280_002541"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEM2272464.1"
                     /translation="MNIIDELEWRGAIYQQTDEEGLRKWVEEKQISLYCGIDPSGDSM
                     HIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLR
                     VQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRLEVG
                     ISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDLIRKKQGENAKAFGL
                     TIPLLTKADGTKFGKSEGGAIWLNPEKTTPYEFYQFWINTDDRDVVKYLKYFTFLTEA
                     EIDELAKQVETEPHLRAAQKTLAAEMTKFVHSEEALEQALKISKALFSGDVKALTADE
                     IEQGFKDVPTFVAEDTEANLVDWLVTLGIEPSKRQAREDVANGAIYINGERQQDLEKI
                     MDASDRIENKFTIVRRGKKKYFLVSYK"
     gene            complement(2701..3303)
                     /gene="rpsD"
                     /locus_tag="U0280_002542"
     CDS             complement(2701..3303)
                     /gene="rpsD"
                     /locus_tag="U0280_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEM2272465.1"
                     /translation="MARYTGPSWKVSRRLGISLSGTGKELERRPYAPGQHGPTQRKKI
                     SEYGLQQAEKQKLRHMYGLTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLG
                     LARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF
                     VPEYVTFDAEKLTGSLNRLPERSELAAEINEAFIVEFYSR"
     gene            complement(3515..4003)
                     /locus_tag="U0280_002543"
     CDS             complement(3515..4003)
                     /locus_tag="U0280_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEM2272466.1"
                     /translation="MIEIKKMTGTKEENYALALKQVQAMIAGEPNLIANLSNVSSILN
                     QALSDINWVGFYLLEKETNQLVLGPFQGLPACIRIPLGKGVCGSAASDQKTYIIENVH
                     DFPGHIACDAASNSEIVLPIVKNNQLLGVLDIDSPLFNRFDEVDQLWLEKIRDAITQE
                     IN"
BASE COUNT         1314 a          682 c          865 g         1170 t
ORIGIN      
        1 gagtgaatag agatgaatgt aacaatttat gatgttgcaa gagaagcgaa tgtttctatg
       61 gcaacggtat ctcgggtagt gaacggcaat ccgaatgtta aaccagtaac aagaaaaaaa
      121 gtactagatg ttattaatca attagggtat cgtcctaatg ctgtagctag aggcctagcg
      181 agcaaacgta caactacagt tggtgttatt attccagata tttctaacgt gttttatgca
      241 gagcttgctc gtgggattga agatattgcg acaatgtata aatacaacat tatcctcagc
      301 aattcggacg aaaatgagga taaagaactt caagtactta acacgcttct tggtaaacaa
      361 gtggacggaa ttatttacat gggcgaacgt atttcagaac aattacaaga agaatttgac
      421 cgttctccag cgccagtagt tttagcagga gccgttgata tggaaaataa atttgcttct
      481 gtaaacatcg attacaaaca agcaacaaaa gaagcggtga aacgttttgt agataatggt
      541 cataagcaaa tcgcttttgt aagtggttct ctaaacgagc cggtcaatcg cgaaatgaaa
      601 ttagctggtt acaaagaagc attagaagaa gctggaattt cttatcaaga agactacatt
      661 attgaagcga aatataacta caatgcaggt gtaaaagttt gggcagaatt aagtgccttg
      721 tctaaaaaac caaatgcagt ggtagttgca gatgatgaac tagctattgg tattttgaat
      781 gccgcgcttg atgctggaat caaagtccca gaagacttag aagtaatgac aagcaacaat
      841 acgaaattaa cattaatgtc acgcccgcaa ctttcgacaa tcgtacaacc tttatacgat
      901 atcggcgccg tggctatgcg tctactaaca aagttgatga cgagtgaaga agtagatgaa
      961 aaaacagtta tcttaccaca tagtgaaaaa ctacgtggta cgactaaaga aaaaaaataa
     1021 gttgacagca tttttaacgg tatgttataa atgtatgtat acttttcata acgaaaatga
     1081 ctatgaacgg acgaagtagt tgcttattct tattcctaga gagctagtgg ttggtggaaa
     1141 ctagtagagg taagtagacg aattacatcc cggagtcacg ctgcgcagga taatggcgca
     1201 gccggtgttg agccgttatt ttttgaagta ggatttattc ctaaaagtag ggtggtacca
     1261 cgttaattaa tacgtccctt cgctaaactg tttagcggag gggcgttttt tatgtccaaa
     1321 aataaaagga gaatgatgaa aatgaatatt attgatgaat tagagtggcg cggagctatt
     1381 taccagcaaa cagatgaaga aggattacgc aaatgggtag aagaaaaaca gatttctttg
     1441 tactgcggga ttgatccatc tggagactcg atgcatattg gtcatttaat tccattcatg
     1501 attttacgcc gtttccaaaa cgctgggcac cgtccgatta ttttagttgg tggagcgaca
     1561 ggaactattg gcgatccgag tggtaaaaag gaagagcgta agttacaatc aatggaacaa
     1621 attagtaaaa atgtggaaag tttgcgcgtg caacttggaa agatttttga ttttgaaggt
     1681 aattctgcgg cgagcatggt gaacaactat gattggacaa aagatgtgag tatccttgat
     1741 ttcttgcgtg actatggaaa agaattcaac gtgaacacga tgctttcaaa agatatcgtt
     1801 gctagtcgtt tagaagtagg gatttcattc acggagttcg cttaccaaat tttacaagcg
     1861 atggacttta atcacttata tgaatttaat gattgccgtt tgcaaattgg tggtagtgac
     1921 cagtggggga atattactgc tggacttgat ttgattcgta aaaaacaagg cgaaaatgcc
     1981 aaagctttcg gtttaacaat tcctctttta acaaaagctg atggaacgaa atttgggaaa
     2041 tcagaaggcg gggcaatttg gttaaatcca gaaaaaacaa cgccatatga gttttatcaa
     2101 ttctggatta acacagatga tcgtgatgtt gtgaaatacc tgaagtactt tacattccta
     2161 acagaagcag aaattgatga gttagcaaaa caagtagaaa cagaaccgca tttacgagct
     2221 gcacaaaaaa cgttagcggc agaaatgacc aaatttgtgc atagtgaaga agcgttggaa
     2281 caagcactta aaatttcaaa agcactattt agtggtgatg taaaagcgct gactgcggat
     2341 gaaattgaac aaggcttcaa agacgttccg acatttgttg cagaagatac ggaagcaaac
     2401 ttggtagatt ggttagtaac acttggtatc gaaccttcca aacgtcaagc gcgtgaagat
     2461 gttgcaaatg gagctattta cattaatggg gaacgtcagc aagatttaga aaaaatcatg
     2521 gatgcaagtg accggattga aaataaattt acaattgtga gacgcgggaa gaaaaaatac
     2581 ttcttagttt cttataaata atagggaaag cactcgtttt taaagacgag tgcttttttg
     2641 tgcataaaaa aaccttacaa acacaaccga agtcatgcat tgtaaggttt ttagctctaa
     2701 ttaacggctg tagaattcta cgataaatgc ttcgttgatt tcagcagcaa gttcagaacg
     2761 ttctggtaga cggttaagag aaccagttag tttttctgca tcgaaagtta cgtattcagg
     2821 cacgaagctt gaaacttcta agctttcagc gattgcagag tttttagcag atttttcacg
     2881 aacagagatc acttgaccaa cagatacttg gtaagaaggg atatctacgc gtttgccatc
     2941 tacagtgatg tggccatggt ttacgagttg acgagctgca cgacgagtgc gagcaagacc
     3001 aagacggtaa acgatgttat caaggcgttg ttctagtaag atcatgaagt tctcaccatg
     3061 tttaccttgt aatttaccag ctttgttgaa cgtgtttttg aattgacgtt cagttaatcc
     3121 atacatatga cgcaattttt gcttttcagc ttgttgcaaa ccatattctg agattttttt
     3181 acgttgagtt gggccgtgtt gacctggagc atacggacga cgctctaatt ctttacctgt
     3241 tccagaaagt gaaattccta aacgacggga aactttccag cttggacctg tataacgagc
     3301 cataagagac tcctcctttt atttgttttt ggtataaaac aaacgtgacg taaaaccaaa
     3361 tcagggcagt ttaccttcat ataccatcac catagcagcc gccggttacg tgatatacca
     3421 cagaattaca tctgggggta aacaacacac tcattcattt tactcaagct gcattttaca
     3481 catcttccag tatagtatag ttactagtag cttgtcaatt tatttcttga gtaatcgcat
     3541 cacggatttt ttctagccat aactggtcca cttcatcaaa acgattaaaa aggggactat
     3601 caatatcaag cacgccaagc agttgattat tttttacaat tggtagaacg atttctgaat
     3661 tagaagctgc atcacaggcg atatgtccag ggaaatcatg cacattttcg attatatacg
     3721 ttttttgatc tgaggcagca gaaccgcaca cacctttacc tagtggaatg cgaatgcaag
     3781 caggcaaacc ttggaagggg ccgagtacta attgatttgt ttctttttca agtaaataaa
     3841 atccaaccca attaatatca gaaagtgctt gatttaatat agaagaaaca ttacttagat
     3901 tcgcaattag atttggttcg ccagcaatca ttgcttgtac ttgttttaaa gcaagtgcat
     3961 aattttcttc ttttgttccg gtcatttttt tgatttcaat cattttttta tccccacatt
     4021 tcttttcaaa t
//
LOCUS       DASDXX010000204         4010 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.204, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000204 DASDXX010000000
VERSION     DASDXX010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4010
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.204"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(129..1058)
                     /locus_tag="U0280_002544"
     CDS             complement(129..1058)
                     /locus_tag="U0280_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF561 domain-containing protein"
                     /protein_id="HEM2272467.1"
                     /translation="MSLTEMLQIKYPILQGAMAQIATYELASAVSNAGGLGIIASGGM
                     SADTLREQIRLCKEKTTKPFAVNIMLMMPNCPELVDVIIEEDVRVVTTGAGTPKPFME
                     KFKAAGIKVIAVIPSVKIAQKMEEIGVDAVVAEGTEAGGHVGETTTMALVRQVVSAVN
                     IPVIAAGGIADGHGMAAVYALGASGVQIGTLFLVAEECPVPASFKQAVLDATDTSTTV
                     TGRRNGAPVRSIKNPMIQKYVELENENASRDKLEELTLGSLRKAVHEGDVENGSVMAG
                     QICGMLKEIRSTSDIIESLMKESKQVASNLVIQ"
     gene            complement(1080..2303)
                     /locus_tag="U0280_002545"
     CDS             complement(1080..2303)
                     /locus_tag="U0280_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HEM2272468.1"
                     /translation="MTKEINRWGVLIGSVGVLLCTGAVYAFSVFAGPLSAAHGWTIPQ
                     VMMAFTINAAIGPIPTILGGILTDKGKAKWAILIGGILFGLGFALTGFATSTTMLYLS
                     YGVLAGLGQGFAYSGCLSNTIRLFPDKRGLASGLITAGMGGATIIAAPIANHLIETYN
                     VMTAFKIMGAVYIAVVIGCSFLIRVAPAGYAPKGWTPPANNAAGMVNVPWTGMVRTVT
                     FYLILLMLGIGAFSGLMIASNASLIGQNMFGLTAASAAAYVSIYSLSNCLGRVVWGAV
                     SDRLGRSNTLMIIYTVIALSLLALATLQSVVGFVIGIIGLGLCFGGTMGVFPSIVMEN
                     YGPKNQGVNYGIVFIGYSTAAFFAPKMAAQIAGQNGGDFTQAFYIAIALAAVGLCINI
                     VYKLREKKQPTKELA"
     gene            complement(2300..3883)
                     /locus_tag="U0280_002546"
     CDS             complement(2300..3883)
                     /locus_tag="U0280_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HEM2272469.1"
                     /translation="MSKVIKASEAAKLLKDGDTVAFSGFGLACVNEEMAIAVEKRFLE
                     EGAPRNLTVMHASALGDRREKGMSHWGHEGLIKRWIGGIAIASPKMAKLIEEDKCEAY
                     NLPQGVITQLYREIAAKRPGVITKIGMGTFVDPRIEGAKMSASSKDNLVELLTIHDEE
                     WLFYPSFPIQVALIRGTVADEFGNLTLEKEGLHMEVLPIAQAVRNSGGIVIAQVESVA
                     KKGSLNPKDVRVPGILVDHIIISEPENHFQTENTQYNPAFSGHIQVPLGDIEPLPLDD
                     RKVIARRSAAELEPQTILNLGVGIPVNVSTVAAEEGVSDQLILTTEAGSVGGVPAGLA
                     DFGHAYNSEAIVDHHSQFDFYDGGGLDLSVLGLAQTDESGNVNVSKFGSRVAGCGGFI
                     NISQSAKKLIFAGTFTAGGLKTRVADGKLEILQEGKAKKFIKQVQQITFSGEYASTTD
                     QIILYVTERAVFRLENGKMVLTEIAPGVDLEKDILGQMEFEPVIASDLKVMDSGMFSE
                     QWGGLKTIIEKQTREGVSI"
BASE COUNT         1164 a          940 c          681 g         1225 t
ORIGIN      
        1 caagccttat cgctgtcatc attacagctg ttctacttat ttatttgatg gtagacttaa
       61 caaaaatgta tcgacgtaaa taaaaaaaga gtcagcaaaa tccaccagga tattactgac
      121 tctttttatt attgaatcac taaattgctt gcaacttgtt tagattcttt catgaggctt
      181 tcgataatat cactagtgga acgaatttct tttaacatac cacaaatttg tccagccata
      241 actgaaccat tctcaacgtc accttcatgt actgcttttc taagagagcc aagtgttaat
      301 tcctctaatt tgtctctgga ggcattttcg ttttctagtt caacatattt ttgaatcatt
      361 gggtttttaa tacttctaac tggcgcacca ttgcgacgac ctgttacagt cgtgcttgta
      421 tccgttgcgt caagtaccgc ttgtttaaag ctagctggaa ccggacattc ctcagcaaca
      481 aggaaaagtg tgccgatttg gacaccgctt gcgcctaacg cataaacagc tgccattccg
      541 tgaccatctg caataccgcc tgctgcaatg acaggaatat ttactgctga aacaacttga
      601 cgaacgagtg ccatcgttgt tgtttctccg acatgtcccc ctgcttctgt cccttctgca
      661 acaacagcgt ccacaccgat ttcttccatt ttttgagcaa ttttcacaga cgggataacg
      721 gcgataactt taattccagc tgctttaaat ttttccataa atggtttagg cgtgcctgcc
      781 ccagttgtaa caactcgcac atcttcttca ataataacat cgacaagttc tggacaattt
      841 ggcatcatca gcatgatatt tacagcgaac ggttttgttg tcttttcttt acaaaggcga
      901 atttgttctc gtaatgtgtc tgctgacatt ccacctgatg cgataattcc tagcccacct
      961 gcatttgata ccgcggaagc taattcatat gtggcaattt gtgccattgc cccttgtaaa
     1021 attggatatt tgatttgtag catttcagtt aaactcattt tcttttctcc tctctatttt
     1081 tacgctaatt ctttagttgg ttgttttttc tcacgtaatt tataaacaat attaatgcaa
     1141 agtcctacag cagcaagtgc gatagctata tagaaagctt gtgtgaagtc gccaccgttt
     1201 tgaccggcga tttgcgctgc catttttggt gcaaagaagg ccgctgtgga ataaccaatg
     1261 aagacgattc cgtagttgac gccttgattt ttcggaccgt aattttccat aacgatagac
     1321 gggaaaacgc ccattgttcc accaaagcaa agtccaagtc caataattcc gataacaaat
     1381 ccaacaacag attgaagcgt tgcaagtgct agtaaagata aagcaatcac tgtatagata
     1441 atcatcaatg tattagatct acctagacgg tcagatacag cgccccaaac tactcgacct
     1501 aaacagttgc ttagtgaata aatactaacg taagcagcag ccgatgcagc cgtcaagcca
     1561 aacatatttt gaccaattaa ggatgcatta gaagcaatca tcagaccgga aaatgcgcca
     1621 atacctagca ttaaaagaat cagataaaaa gtaactgttc gaaccattcc cgtccaaggt
     1681 acatttacca taccagctgc attattagca ggcggtgtcc aaccttttgg tgcataacca
     1741 gctggtgcga cgcgaataag gaaactacat ccaatgacaa ctgcgatata aacagctccc
     1801 ataattttaa atgctgtcat tacgttatat gtttcaatta agtggttcgc aatcggtgca
     1861 gcaatgattg tcgctccacc cattcctgca gtaataagtc cagaagcaag accacgttta
     1921 tctgggaaaa gacgaatcgt gttactaaga catcctgaat acgcaaaacc ttgcccaagc
     1981 ccagcaagga caccataaga caaataaagc atcgtcgttg aagtagcaaa tcctgttaac
     2041 gcaaaaccaa gcccaaacag gattccccca attaaaatag cccattttgc tttcccttta
     2101 tccgttaaaa tcccacctaa aatagttgga atcggtccaa tcgcagcatt aattgtaaat
     2161 gccatcataa cttgcggaat tgtccaacca tgagcggcac ttagcggtcc agcaaaaaca
     2221 ctaaatgcat ataccgcacc ggtacaaagc agaacaccaa cagagccaat taagactccc
     2281 caacggttta tttcttttgt catatagata ctccctctct tgtttgtttt tcaataatag
     2341 tttttaagcc gccccattgt tcactaaaca taccgctatc cattactttt aaatcactcg
     2401 caataacagg ttcgaattcc atttgtccaa ggatatcttt ttctaaatct actcctggcg
     2461 cgatttctgt tagaaccatt ttgccatttt ctaaacggaa tacagctcgc tctgtcacat
     2521 agaggatgat ttggtcggtc gttgaagcgt attcgccact aaatgtgatt tgttgaactt
     2581 gtttgataaa ctttttagct tttccttctt gtaaaatctc taattttccg tcagctacac
     2641 gcgtctttaa tccacctgct gtaaaagttc cggcaaaaat taattttttc gctgattggg
     2701 agatattaat aaatccaccg cagccagcaa ctcttgagcc aaacttgctg acattcacat
     2761 taccggattc gtcggtttgc gccaaaccaa gtacggataa atcgagtcct ccaccatcgt
     2821 aaaaatcgaa ctgcgaatga tgatcgacaa tagcttcact gttataagca tgaccgaaat
     2881 ctgctaaacc tgctggaaca ccaccaacag aaccagcttc cgttgttagt attaattgat
     2941 cactcacgcc ctcttccgct gctacagttg atacgttcac cggaattcct acacctaaat
     3001 ttagaatagt ttgtggttct agttctgctg ctgaacgacg cgcaattact ttacggtcat
     3061 ctaacggaag tggctcaata tctccaagcg gaacttgaat atgccctgaa aaagctgggt
     3121 tgtactgtgt attttcagtt tgaaaatgat tttccggttc tgaaataata atatgatcaa
     3181 ccaaaattcc tggaactcta acatctttag gattaagcga tccttttttc gcaacagatt
     3241 ctacttgagc gattacaatt ccgcctgaat ttcgaactgc ctgtgcaatt ggtaagactt
     3301 ccatatgtaa gccttctttt tctaacgtta agttcccaaa ttcatcagcc acagttccgc
     3361 gaatgagcgc aacttgaatt gggaaacttg gataaaatag ccattcttcg tcgtgaatcg
     3421 tcaatagctc tactaagttg tctttagaac tcgcggacat ttttgcccct tcaatacgtg
     3481 gatctacaaa tgttcccatg ccaatttttg taatcacgcc tggccgttta gctgcaattt
     3541 cacgatacag ttgcgtaatt acaccttgtg gtaaattgta tgcttcacat ttgtcttctt
     3601 caattagttt cgccatttta ggagaagcaa tcgcaattcc gccaatccag cgtttaatta
     3661 atccttcatg tccccagtga ctcattcctt tttccctgcg atcaccaagc gcactagcat
     3721 gcataactgt tagattacgc ggtgcccctt cttctaaaaa acgcttttca accgcgatag
     3781 ccatttcttc attaacacaa gctaaaccga aaccactaaa agcaacagta tcgccatctt
     3841 ttaataattt tgctgcttca ctagctttta ttacttttga caaattcctc actcctcatt
     3901 gttcaattat tcacatatat ttgtaatgac atgcagttct ttataaagca acttccgtgc
     3961 caacatcaaa aatggctcta taaagcactt tataaattca aatattattt
//
LOCUS       DASDXX010000205         4003 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.205, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000205 DASDXX010000000
VERSION     DASDXX010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.205"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            308..2023
                     /locus_tag="U0280_002547"
     CDS             308..2023
                     /locus_tag="U0280_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HEM2272470.1"
                     /translation="MIDKRLFQLVEKKSLVLLILFRVLSLGLMIGLWFVFAQQLTYYL
                     EGQSVDWLWLIGTVLVVLVGKAILTKLAEKQIYQASAELRLSMRRAVMEKAFRLGNNE
                     GQLPASTLTQLAVDGIEQLEIYYSRFLPQLFYCLIASLMIFGSLVGFAWQPAIVLLIC
                     MPMIPIVIMAVMKIAKRILSGYWSDYTNLGTKFHENLSGLSILKAYNQDKYKQEEIVS
                     DAERFRKATMSLLSMQLNSITIMDIISYSGAALGIGMSLIMFTNGNISMTGMLMFLLL
                     SAEFFIPMRQLGSLFHVAMNGISACSKLFAYLELKEQVYGSEELAKPLEKMEVRHLTY
                     TYEEGKAKALQDISVNFNKGSFSALVGKSGSGKSTFVRVLLNQLPGYQGEIVWNDVPL
                     ASLSGETIRKQAVLVDNHGYLYANRIRENLLIGNPAANDSDLWNVLEQVSLADFVRKL
                     PEQLNENLEENGSNLSGGQRQRLLLARALLCQAEVYVFDEITSGVDLESEKIILLVLQ
                     KLAKEKIVLFISHRLYNVLDADQVLVFDAGKLLEVASPERLQQESNYFKNYFLEEEAL
                     LKGGA"
     gene            2025..3671
                     /locus_tag="U0280_002548"
     CDS             2025..3671
                     /locus_tag="U0280_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272471.1"
                     /translation="MSEWTIIGWLLKFVKPLRGKMVLAILLGIISNLSVIMISLIGTY
                     GIITVILQQHLNPYKWLFVMVACGVVRGLARYSEQYLNHDIAFRLLAIIRERIFATLR
                     KLGPARLSGKKSGDLVAAITTDVEALEVFFAHTISPVFIALGTTIVTVGFLASYDVGL
                     ALILLLGQILVGVVLPVISYKRNKKIGTAYQQEFVGLNQMVMESIASLQDIFQFKLGE
                     ERLSKLETQGEKLNKQYKKRIKQGSELQIFGEWVLIGTATLILVLGSLWQLPLETVLI
                     GTVLSLSSFGSVLALNALGTALLTTFASGKRLYTLTEEKPVVLFNGQLELSDFESVEL
                     DKVSFSHDGKQPLLNEISLALPKRKWLGIGGESGSGKSTLVKLLMRYWDPKGRIKLND
                     NALPEITESSLHRLEGVMEQSTFLFEDTLGNNIRLGKKDATLEEVKEAARKAAIDTWI
                     ETLPEGYDTIIGGQSRNLSDGERQRIGLARLFLHDAPLLLLDEPTSNLDYINEQAILN
                     TLRSEIQDKTVLVISHRATTLDLAEEQLFIENGALKRAAK"
     gene            complement(3708..>4003)
                     /locus_tag="U0280_002549"
     CDS             complement(3708..>4003)
                     /locus_tag="U0280_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2272472.1"
                     /translation="KKNYLYCTAVIQTTGKVSYEQLVEHLEALRAKTVKEPGCVLFEI
                     VPLESALGRFALWEIWQNQEAFYYHHEQNYTKEFFAAELDTVEFFESSEKVNL"
BASE COUNT         1240 a          589 c          893 g         1281 t
ORIGIN      
        1 tttatattta gatatttgaa aaagttgcgc gatttcgcca ctggaaagag tatgcatctg
       61 aaaacctcct tgtgatttag ttttagtata aactatgtgg ttaccacgcg gtcaaataaa
      121 aaaaataaat gacaatgaga atcattatca aacgttgatt tttgtgatat aataaacaaa
      181 gatttattaa tgggggttag caagcaaatg ggaaaagtag tattgaaaat ggcttatact
      241 gccgaaaaat caaagaaaat attaaggtat cttgaaacga accttaatgt aactcggggg
      301 aagtacaatg attgataagc gtttgtttca actggttgaa aagaaatctt tagtgttatt
      361 aattcttttt cgtgtgctta gtttagggct gatgattggt ctttggtttg tttttgctca
      421 acaattaacg tattatttag agggccaaag tgtcgattgg ttatggctta ttggaacggt
      481 tttagttgtt ttagttggta aagcgatact taccaaatta gcggagaaac aaatttacca
      541 agcatcggcg gaattgcgtt tatcaatgag gcgcgctgtg atggaaaaag cttttcggtt
      601 aggcaacaac gaaggacagc taccggcatc aactttaacg cagctcgcgg tagatgggat
      661 tgaacaatta gaaatttatt attcacgttt tttaccgcaa ttattttatt gtctcatcgc
      721 ttctttgatg atttttggaa gtttagttgg atttgcttgg cagccggcga ttgtgctatt
      781 aatttgtatg ccgatgattc cgatagttat tatggcagtg atgaaaattg ctaaacggat
      841 tttgagtggt tattggtcgg attatacgaa tttaggaacc aaatttcatg aaaatttaag
      901 tggcttgagt attttgaagg cttataacca agataaatat aagcaagagg aaattgtttc
      961 tgatgcggaa cgtttccgta aagctacgat gagtttgtta tcgatgcaac tgaattcgat
     1021 tacgattatg gatattattt cgtatagtgg ggcggcactt ggtattggta tgtcgttaat
     1081 tatgttcaca aatgggaata taagcatgac tggtatgttg atgttcttac tactaagcgc
     1141 cgaattcttt attccaatgc gtcaactcgg atctttattc catgtggcga tgaatggaat
     1201 tagtgcttgc agtaaattgt tcgcttattt agagttaaaa gagcaagttt atggctcaga
     1261 agaactagct aaaccgttag aaaaaatgga agttcgtcat ttgacatata catatgaaga
     1321 gggtaaagct aaagcactgc aagatatatc agtaaatttc aataaaggaa gtttttcagc
     1381 acttgtcgga aagtctggtt caggaaaaag tacatttgtc cgagtattat taaatcaatt
     1441 acctggttat caaggggaaa ttgtttggaa tgatgtacct ttagctagtt tgagcgggga
     1501 aactattcgt aaacaagctg tgttagtaga taatcatggt tatctttatg caaatagaat
     1561 tcgggaaaat ttattaattg gtaatccagc tgctaatgat agcgatttat ggaatgtttt
     1621 ggagcaggtt agtttggctg attttgttcg gaagttaccc gagcaattaa atgagaattt
     1681 agaagagaat ggaagtaatt tatctggtgg gcaaagacag cgattgttac tggcgagagc
     1741 attgctatgt caagcggaag tctatgtttt cgatgaaatt acgtctggtg tggatttgga
     1801 aagtgaaaaa attattcttt tggtgttgca gaaattagct aaagaaaaaa tcgtgctctt
     1861 tatttcgcat cgcttatata atgttttgga tgcggatcag gtactcgttt ttgatgcggg
     1921 gaaattgctg gaagtggcga gcccagaacg attacagcaa gaatctaatt acttcaaaaa
     1981 ctacttttta gaagaagaag cattgctgaa agggggagca tgacatgtca gaatggacaa
     2041 ttattggctg gttgttaaag tttgttaagc cattacgagg aaagatggtt ttggcgattt
     2101 tacttggtat tattagtaat ttatcggtta tcatgatttc tttaatcggt acgtatggca
     2161 ttatcacggt aattttacag cagcatctga atccttataa atggctcttt gtaatggttg
     2221 cttgtggggt ggttcgcggt ttggcacgat attcggaaca gtatttaaat catgatattg
     2281 cctttcgttt gcttgcaatt attcgtgaac gtatttttgc gactttgcgg aaactaggac
     2341 ctgctcgttt atctggaaag aaaagtggtg atttagttgc tgcgattaca acagatgtcg
     2401 aggccttgga agtgtttttc gcgcatacta tttcaccagt ttttatagca ctaggtacga
     2461 cgattgtaac tgttggcttt ttggcaagct atgatgttgg tttagcgctg atacttttgt
     2521 taggacaaat cttggttggt gtcgttttgc cagtgattag ttataaacga aataaaaaaa
     2581 tcggaacggc ttatcaacaa gaattcgttg ggctcaatca aatggtaatg gaaagcattg
     2641 caagtttaca agatatattc cagtttaaat tgggcgaaga gcgtttgagt aaattagaaa
     2701 cacaaggtga aaagctcaat aagcagtata aaaaaagaat aaaacaagga agcgaactcc
     2761 aaatatttgg tgaatgggtg ctaattggta cggcgacttt aattttagtg ctaggtagtc
     2821 tttggcaatt accgcttgaa acagtattaa ttggaactgt gcttagtctg agctcttttg
     2881 gatcggtatt ggcattaaat gctttaggaa cagcgctgtt aactactttt gctagtggta
     2941 agcgattata tacattaaca gaagaaaaac ctgtggtatt atttaacggc cagcttgaac
     3001 tatcggattt tgaaagcgtg gagttagata aagtgagttt tagtcatgat ggaaaacaac
     3061 cacttttaaa cgaaatttcg ctagcgcttc ctaagaggaa atggctcggc atcggtgggg
     3121 aaagtggcag cgggaaaagt accctagtaa aactactgat gcgttactgg gatccaaaag
     3181 gtcggattaa attaaatgat aacgcactcc ctgaaattac agagtcttcg cttcatcgac
     3241 tagaaggtgt aatggagcaa agtacattct tgtttgaaga tacacttggt aataatattc
     3301 gtttaggaaa aaaagatgct actttggaag aagttaaaga ggccgcccga aaagctgcta
     3361 tcgatacatg gattgagact ttgccagaag gatatgacac gattattggc gggcaatcac
     3421 gaaatttatc agacggcgaa cgccagcgaa ttggcttagc tagactattt ctccatgatg
     3481 ccccgttgtt attattagat gaaccaacaa gcaatttgga ttacattaat gaacaagcga
     3541 ttttaaacac gctccgttca gaaattcaag ataaaacggt gctcgtaatt tctcaccgag
     3601 caacaacatt agacttggca gaagaacaat tatttataga aaatggtgca ttgaaacgtg
     3661 cagcaaaata ataaaaacag cttgtataaa ttacaagctg tttttattta taaatttacc
     3721 ttctctgagc tttcgaaaaa ttcaaccgtg tcaagttccg ctgcaaaaaa ttctttcgta
     3781 tagttctgtt cgtgatgata ataaaaggct tcctgattct gccaaatttc ccacaaagca
     3841 aatctgccga gtgcactttc taaaggaaca atctcaaata aaacacatcc tggttctttc
     3901 actgttttag cgcgtaacgc ctccaaatgt tcgaccagct gttcataaga aacttttccg
     3961 gtagtttgaa taactgctgt gcaatataaa taattctttt ttt
//
LOCUS       DASDXX010000206         3951 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.206, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000206 DASDXX010000000
VERSION     DASDXX010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.206"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            92..550
                     /locus_tag="U0280_002550"
     CDS             92..550
                     /locus_tag="U0280_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272473.1"
                     /translation="MLNFEEKKALIESIDGFELHEISMGRINVHYPASKRDKKIIVKH
                     LHPNGNAFVYAPFLEVEPLDKQGYVNVKDYSENEIRVLLLEAKEFMDSDEDGYKEGLT
                     KIYQDNSGEKLSLVYENKMWVIFTGENLEAVFPTLESAEGYLLDEGFFEA"
     gene            567..2309
                     /gene="ade"
                     /locus_tag="U0280_002551"
     CDS             567..2309
                     /gene="ade"
                     /locus_tag="U0280_002551"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HEM2272474.1"
                     /translation="MVENLEQLQERVAVSDGRAKADLVIKNGRIINVFSGEIMDGDIA
                     IKNGYIAGIGNFPDAEKIIDAAGAFIAPGFIDAHVHVESAMVTPAEFARVLLPNGVTT
                     IVTDPHEIANVAGEKGIEFMLEDAKGVPIDMFVMLPSSVPATEGEHNGETLHAEKLHP
                     LYRHEKVIGLAEVMDFPSVAKGSSDILTKIIDAKKEGGRIDGHGAGLTSADLNNYLAV
                     GIRTDHESTTAKEATDRLRAGMFVMLREGTVGRDLLQTIPAVSEKNSHRFCFCTDDKL
                     INDLITEGSINYNIRLAIKNGIDPITAIQMATINAANCHNLPYLGAVAAGYQADIVFL
                     TDIETVEISKVLKNGEVVVDNGVRHEAAFKQQAAVPFVSPPINHHVSLQDLALPLTKE
                     TCYVIGMQPNSLFTEKRIEQVAIQDGKFVPTVENDLLKMAVVERHHDTGCVGLGIVKG
                     FGLTEGAIATTVAHDSHNIVAVGISDEAMKAAIDHITQTGGGIAVVNGAGQVLHDLAL
                     PIAGLLSDKSYEEVENDLAGLLNAFKQISTADGFDPFLTLSFLTLPVIPELKLTDQGL
                     FDFATFQIISNEVN"
     gene            2331..3371
                     /locus_tag="U0280_002552"
     CDS             2331..3371
                     /locus_tag="U0280_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2272475.1"
                     /translation="MNWWSYIKDKRFFLLFFCSIMFFVGVLISIDPNSKLTLGNFIYL
                     YVFVLVFLLSYLVLGYFFKYNYWREMKELVSGEIEENIIELLPKPRTREQAFFNQLMA
                     KKHKEELRTISKLQDKQQEYHDFILYWVHEVKTPVVASKMLINNPDLNDTETIFKQID
                     EELTTIDKLVMQALYFSRLDTFSKDYFIQEQNLGVVVRESVKRHSKLFIGKKMKLDLQ
                     NVDMDVRTDSKWLGFILDQILSNALKYTKSSGEVKIWCDTEASEKKVLHIKDNGRGIK
                     EEDLPRVFEQGFTGNIGRQEKKATGMGLYLAKQMAKKLGHEICIQSESGVGTEVKIYF
                     EQKDDYLLIAKD"
     misc_binding    3471..3711
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3769..>3951
                     /locus_tag="U0280_002553"
     CDS             3769..>3951
                     /locus_tag="U0280_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM2272476.1"
                     /translation="MDYITEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKI
                     APLKFILNIYIWIMRGT"
BASE COUNT         1310 a          609 c          867 g         1165 t
ORIGIN      
        1 ctggttttgt gtttaatgat ttaaaagtat ggttaccagc tttagtgaca gctattttaa
       61 aagaaaatta atttggggga aaaataatac tatgttaaac tttgaagaaa aaaaagcatt
      121 aatagaatct atcgacggct ttgaattaca cgaaatttct atgggccgta ttaatgtaca
      181 ctatccagca agtaaaagag acaagaaaat catcgtcaaa catcttcatc caaacggtaa
      241 tgcttttgtt tatgcaccat ttctagaggt agagccactc gacaaacaag gctatgtgaa
      301 tgtaaaagat tactctgaaa atgaaatccg cgtattacta ttagaagcaa aagaattcat
      361 ggatagtgac gaggatggct ataaagaagg tctaactaaa atatatcaag acaatagtgg
      421 cgaaaaactt tcactagtgt atgaaaataa aatgtgggtt atttttacgg gggagaactt
      481 ggaagcagtt ttcccaaccc ttgaaagcgc agaaggttat ttgcttgatg aaggtttttt
      541 tgaagcttaa ttgacggagg cgagttttgg tggagaattt agaacagctg caagaacgag
      601 ttgcagtaag tgatggacga gcaaaagcag atttagtaat aaaaaatgga cgaataataa
      661 atgtgttttc aggagaaata atggacggag atattgccat caaaaatggt tatattgctg
      721 gtattggcaa ttttccagat gcagaaaaga taatagatgc tgctggtgcc ttcattgcac
      781 ctggttttat tgatgcacat gtccacgtgg agagtgcgat ggtcacacct gctgagtttg
      841 cccgtgtctt actcccaaat ggtgttacaa cgattgttac agacccgcat gaaattgcca
      901 atgtggctgg agaaaaagga attgaattca tgctagaaga tgccaaagga gtaccaatag
      961 acatgtttgt catgctccca tcttctgttc ctgcaacgga aggcgaacat aatggcgaaa
     1021 cattacatgc tgagaaactc catccgcttt atagacatga aaaagtaatc ggccttgcag
     1081 aagtgatgga ttttccatct gtagcaaaag gaagttcgga tattttaacc aaaattatcg
     1141 atgctaaaaa agaaggcgga cgaattgatg gacatggagc tggcttaacg agcgctgatt
     1201 tgaataatta tttggctgtt ggtattcgga cagatcatga aagtactact gctaaggaag
     1261 caacagaccg cttacgtgcc ggaatgtttg ttatgctacg cgagggaact gtaggccgtg
     1321 atttacttca aacaattcct gcagtatctg aaaaaaatag ccatcgtttt tgcttttgca
     1381 cagatgataa actaattaat gatttaatta cggaaggatc aattaactat aacattagac
     1441 tggctatcaa aaacggaata gacccaatta ccgctatcca aatggcaact attaatgcag
     1501 ctaattgtca taatttgcca taccttggtg cagttgctgc aggataccaa gcagatattg
     1561 tttttctaac agatatagaa acagtagaaa ttagcaaagt tttgaaaaat ggagaagtag
     1621 tcgtggataa tggtgttcgt cacgaagctg catttaagca acaagcggca gtaccatttg
     1681 tatctccacc aattaatcat catgtgagtt tacaagattt agcattacct ttgaccaaag
     1741 aaacgtgtta tgtaatcggg atgcaaccca atagtttatt tacagaaaaa cgtatcgaac
     1801 aagtggctat tcaagacggt aagtttgttc caaccgtgga aaacgattta ctcaaaatgg
     1861 cagttgtaga gcgtcaccat gatactggtt gtgttggatt aggcattgta aaaggctttg
     1921 gtttaacaga aggcgcaatt gctacgactg tcgcgcacga ttctcataat attgttgctg
     1981 ttggcattag tgatgaagca atgaaagcgg ctattgatca tattactcaa acaggtggcg
     2041 gtattgctgt agtaaatgga gctggtcagg tacttcatga tttagccctt ccaatcgctg
     2101 gattgcttag tgataaatca tacgaagaag tggaaaacga tttagcgggt cttttaaatg
     2161 cctttaaaca gattagtacg gctgatggtt ttgatccatt tttaacattg tcattcttaa
     2221 cattaccagt gattccagaa ttaaaattaa ccgatcaagg gttgtttgat tttgctacgt
     2281 ttcaaattat ttcaaatgaa gtaaactaat tagtagcgag gaggtgcgcc atgaattggt
     2341 ggagttatat aaaagataag cgatttttct tattgttttt ttgtagtatt atgttttttg
     2401 taggcgtgtt gatttcgatc gatccgaaca gtaaattaac gcttggaaat ttcatttact
     2461 tgtatgtttt tgttttagtc ttcttgcttt cctatctcgt gctgggctat ttctttaaat
     2521 ataattattg gcgtgaaatg aaggaacttg ttagcggaga gattgaagag aatatcattg
     2581 aattactacc aaaaccacgt actcgcgaac aagccttttt taatcaacta atggcaaaaa
     2641 aacataaaga agaattacga actattagta agctacaaga taaacagcaa gaatatcatg
     2701 attttatttt atattgggtg catgaagtga aaaccccggt tgttgcaagt aaaatgttaa
     2761 ttaacaatcc tgatttaaat gatacagaaa cgattttcaa acaaatcgat gaagaattaa
     2821 caacaataga taaattagtt atgcaggcac tttatttttc acgtctagat actttctcaa
     2881 aagactattt tattcaggag caaaatcttg gagtagtagt gcgcgaatca gtcaaacggc
     2941 attctaaact tttcattggg aagaaaatga agttggattt gcaaaatgtg gacatggatg
     3001 tgcgtacgga tagcaagtgg cttggtttta ttttggatca aatcttgtcc aatgcactca
     3061 aatacacaaa aagcagtggc gaagtaaaaa tttggtgtga tacagaagca tctgagaaga
     3121 aagtgctaca cataaaagac aatggacgtg gaattaagga agaagatttg ccacgtgtgt
     3181 tcgagcaagg tttcacgggt aatattggta gacaagagaa aaaagctacg ggtatgggtt
     3241 tatacctagc taaacaaatg gcaaagaaac taggtcacga aatttgtatt caatctgaaa
     3301 gcggcgtagg aacagaagtg aaaatctact ttgaacagaa agatgattac ttactgattg
     3361 ccaaagatta ataaaaagtg gtacaccaat tatgattggc gtatcacttt ttttgtaaat
     3421 aaaatggttg actctatcgc tttatcgtgg tagagtatta gcaagaagaa gtaaaagcgt
     3481 cgaacagaac aagtagagcg taattcttta aaagagagtc cttggttggt gtgaaaggat
     3541 aaagatagcg ttatcgaaca catctcggag ctggtttgct gaagcataag tgagtaggtg
     3601 aactcgggtt aagcccgtta tagcttgtta gtctcgaact aacagaggtt ggtactgcga
     3661 agtatcagca aattgaggtg gaaccacgtg aatattattc tcgtcctctt ggccaattag
     3721 cgccaagtgc gacgggattt ttttatgtta aaaaaggagc gaagaatgat ggattatatc
     3781 acggagattt taccagcatt acttgatgga gcaaaaacaa cactgctcgt ttttgcagtt
     3841 acgttagttt gttcgatacc actcggggcg gttgtggcag tcggaaatat tagcaaaata
     3901 gccccactta aatttatttt aaatatttac atttggatta tgcgaggcac g
//
LOCUS       DASDXX010000207         3950 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.207, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000207 DASDXX010000000
VERSION     DASDXX010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.207"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(13..2337)
                     /locus_tag="U0280_002554"
     CDS             complement(13..2337)
                     /locus_tag="U0280_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2272477.1"
                     /translation="MINKKWMKIVMIPMLVVPMYGLTTVGGQLQDSLTGENSFVKEVE
                     AATTASQQAFIDKIAPAAQASQEKYHLLSSITLAQAILESGWGKSGLATQGYNLFGIK
                     GKYNGQSVIMTTSEYVNGEWIKIDAEFRKYPSWNESVTDHTLLLVNGTSWNKDLYKKV
                     VDATDYKVAAMELQKAGYATSPTYGASLIQVIENYDLAKYDVLYDKILTQKSTSGKAT
                     VTSPTGNGVWTLPYKVKGVQSVSPASTYANKDIDLVSVATTKRGTYYQFKYNGKVVGW
                     VDGKALTIYDSVNYDKVNVGRAKITSPVSNGIWSKPYNVYGREFVTNATTYAQQEIKL
                     LREAQTAKGTYYQFSINNKTIGWIDKRALTIYPYDSIISSKNVNLDGQITNPTGNGIW
                     TKAYKLEGTTSVAQATKYANKDVKISQQIETQHGTYYNISIDGKAIGWLDRNAITLYD
                     QEEYNKTVAIDAVVKNVKGNAVWTEPYRTVGTKLIGPAETYLNKEVEVVREAKTPKGT
                     YYQFKSGGKVIGWLDKKAFDVYDNINYNKAVNLDAVVENVTGNAVWTAPYKSKGIKLV
                     TSAATYKGKATKITREAQTSRGTYYEFSVDGKVIGWLDKKAFDVYDNINYNKAVNLDA
                     VVENVTGNAVWTAPYKSKGVKLVTSAATYKDKATKITREAQTSRGTYYEFSVNGKVIG
                     WLDKKAFDVYDSIEYNKAINMTGLLSNAPGNGIWTEPYRVIGTKNVGQATAYANKTVQ
                     LIREAKTTRATYYQMSVNGKIVGWVDKRAFTNVK"
     gene            complement(2561..3568)
                     /gene="tagH"
                     /locus_tag="U0280_002555"
     CDS             complement(2561..3568)
                     /gene="tagH"
                     /locus_tag="U0280_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acids export ABC transporter
                     ATP-binding subunit TagH"
                     /protein_id="HEM2272478.1"
                     /translation="MGKNIKVSFKHVSKEYDLYQNKSDKIKGLFMPKSQKMQSFWALR
                     DVSFDIHDGETVGLIGINGSGKSTISSIMSGVIPPTQGEVIINGETSLIAIAVGLKGP
                     LTGYENIRLKLLMHGMKSSQINKLMPSIIEFADIGDFINQPIKNYSSGMRSRLGFAIS
                     VHTNPDILVIDEALSVGDQTFYEKCVDKINEFKARGKTIVFVSHSLGQVKSLCDRIIW
                     MHHGEIREMGTAQEVAQKYDEFVKWFNKQPNDYKKKYQKEHKENQKAPQKKIYPNPNA
                     NKYRLTLFDKIFLTVLIALTILFGTLVATGKSFKGLISEESTTQIEKVVHVDNYDLKL
                     N"
     gene            complement(3581..>3950)
                     /locus_tag="U0280_002556"
     CDS             complement(3581..>3950)
                     /locus_tag="U0280_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272479.1"
                     /translation="GQYLYYFVAMIAFLFSVTLFNATISVLVRDYYIMLQSVMRVLFY
                     VTGIVWNLETMLPQWLVDLLKLNPIYYVVNGFRETFLMNKGFWESPSYTMYFWLITLT
                     LLFVGATLHMKFRERFVDYL"
BASE COUNT         1155 a          781 c          585 g         1429 t
ORIGIN      
        1 attattttta gtctatttaa cgtttgtaaa agctcgttta tctacccaac caactatttt
       61 accatttaca ctcatttgat agtaagttgc acgtgtagtc ttagcctcgc gtatcaactg
      121 tactgtcttg ttagcataag cagttgcttg tcctacattt tttgtgccaa taactctata
      181 cggctctgtc caaatgccat tacctggcgc gttgctaagt aatccagtca tattaatcgc
      241 tttattgtac tcaatagaat catatacatc aaaagctttt ttatctaacc aaccgattac
      301 tttgccgttt acgctaaatt cgtagtaagt tcctctactt gtttgcgctt ctcgagttat
      361 tttagttgct ttatctttat atgtggctgc tgaagtaact aatttaacac ccttactctt
      421 atatggagca gtccaaactg cgttgcctgt cacattttcc actacagcat ctaagttaac
      481 cgctttgttg taattaatat tgtcatatac atcgaaagct tttttatcta accagccaat
      541 gactttacca tcaacactaa actcgtaata tgttcctcta cttgtttgcg cttcacgagt
      601 tatttttgtt gccttgcctt tataggttgc tgctgaagta acaagtttaa ttcctttact
      661 cttataagga gccgtccaaa ctgcattacc tgtcacattt tccactacag catctaaatt
      721 aaccgctttg ttgtaattaa tattgtcata tacatcgaaa gcttttttat ctaaccagcc
      781 gattactttg ccaccagatt taaattggta gtaagttcct tttggcgttt ttgcttcacg
      841 gacgacttcc acttctttat tcaagtaagt ttccgctggt ccgattaatt ttgtaccaac
      901 tgtacggtaa ggttctgtcc atacagcatt acccttcaca ttttttacta ctgcgtcaat
      961 agcaactgtt ttattgtatt cctcttgatc atacagtgta atagcgtttc tatctaacca
     1021 accaattgct ttcccatcga tactgatatt gtaataagta ccatgttgag tttcgatttg
     1081 ttggctgatt ttcacatctt tatttgcata tttcgtagcc tgcgccacag aagttgttcc
     1141 ttcaagtttg tacgctttag tccaaatacc atttccggtt ggattagtaa tttgtccgtc
     1201 aaggttcaca tttttacttg aaataatgga atcatacgga tagatagtga gagctcgttt
     1261 atcaatccaa ccaatagttt tattatttat gctaaattgg taataagtac ctttagcagt
     1321 ttgtgcttcg cgtaaaagtt taatttcttg ttgtgcgtaa gttgttgcat tcgtaacaaa
     1381 ttctcttcca taaacattgt atggtttaga ccagataccg ttacttactg ggctagtaat
     1441 tttagcacgt ccgacattta ctttatcata attgacacta tcataaatag ttaatgcttt
     1501 gccatctacc caaccaacta ctttaccatt atatttaaat tgatagtacg tacctctctt
     1561 tgttgtagca acagatacta aatcgatatc cttgttagcg tatgtgctag ctggactaac
     1621 agattgcact ccttttactt tatacggtaa agtccataca ccatttccag tcggacttgt
     1681 aacagttgct tttccggaag tggatttttg agtaagaatt ttgtcgtata aaacatcata
     1741 tttggctaaa tcataattct caattacttg aattaagcta gcaccatatg taggagaggt
     1801 tgcatatcca gctttttgaa gctccattgc agctacttta taatccgttg cgtcgacaac
     1861 tttcttatat aagtctttat tccaagaagt tccgttcact aataaaagag tatggtcagt
     1921 gacagattca ttccagctag ggtatttgcg gaattcagca tcaattttaa tccactcacc
     1981 gttcacatat tcagaagttg tcatgataac tgattgtcca ttatatttcc cttttatacc
     2041 aaataaatta tatccttgtg tagcaagtcc actttttccc caaccagatt ctagaattgc
     2101 ttgagctaaa gttatactag ataacagatg atatttttct tgagatgcct gggcagcagg
     2161 tgctattttg tcgataaatg cttgttgcga tgctgtcgtt gcagcttcaa cctctttaac
     2221 aaaggaattt tctccagtta atgaatcttg taattgtccg ccaacagttg tcaaaccgta
     2281 cattggaaca actagcatcg gaatcattac aattttcatc cactttttat ttatcattat
     2341 tctccaacca ctccttaatt tgtttattgt cctaatttta ccaaacttta tgcctccgta
     2401 agttacaaat ttattacaaa aaaaataaat ggtattataa caacaaattt gttaaacatt
     2461 tagacaaaat ttttatttca ttttatgata aaatgcttta cttcttcaat tttaaataaa
     2521 aacttccaaa agatagataa cttttggaag ttttttacag ttaattcaat tttaaatcgt
     2581 aattatcaac atgtactact ttttcaattt gtgttgtgga ttcttcacta attaagcctt
     2641 taaaagattt ccctgtcgcc actagtgttc caaatagtat cgttaatgca attagcacag
     2701 ttaaaaatat tttatcaaaa agagttagcc tgtatttatt ggcattagga ttaggataga
     2761 tttttttctg aggagctttt tgattttcct tatgctcttt ttgatatttt ttcttataat
     2821 catttggttg tttgttaaac cattttacaa actcatcata tttttgagca acttcttgtg
     2881 ctgtacccat ctctcttatt tcaccgtgat gcatccaaat aattctgtca cacaaacttt
     2941 ttacttgtcc aagtgagtga ctgacaaaaa caatagtttt gccacgcgct ttaaattcat
     3001 taatcttatc aacgcatttc tcataaaaag tctggtcacc cactgataag gcttcatcaa
     3061 taactaaaat atcaggattg gtatgcaccg aaattgcaaa acctaaacga gaacgcatcc
     3121 cgcttgaata gtttttaatt ggttgattaa taaaatcacc tatatcagcg aattcgataa
     3181 tacttggcat caacttgtta atttgagaac ttttcattcc atgcatgagt aatttcaagc
     3241 gaatattttc ataacccgtc agcggacctt ttagtcccac tgcaatggca attaaagaag
     3301 tttctccgtt gataatgact tctccttgtg tcggaggaat aacacctgac ataatactcg
     3361 atatagttga cttaccagaa ccattgatcc caataagtcc tactgtttca ccatcatgaa
     3421 tatcaaaaga tacgtctcgc aacgcccaaa aggattgcat tttttgactt ttcggcatga
     3481 acaagccttt gatcttatca gatttatttt gatagaggtc atattctttc gacacatgtt
     3541 taaatgatac ttttatattt ttacccatct gtctaacctc ctataaataa tccacgaagc
     3601 gttcgcggaa tttcatgtgt agtgtcgcac caacaaatag taatgttagc gtgattaacc
     3661 agaaatacat cgtgtatgat ggagattccc agaagccttt attcattaag aatgtctctc
     3721 taaagccgtt taccacatag taaatcggat ttagtttgag taaatctact agccattgcg
     3781 gcaacattgt ttctaaattc caaacaatcc ctgttacgta aaaaagtaca cgcatgacag
     3841 attgcagcat aatataatag tctcttacta aaacgctaat tgttgcatta aataaagtaa
     3901 cactgaagag aaaagcaatc atggctacaa aataatacaa gtactgaccc
//
LOCUS       DASDXX010000208         3932 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.208, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000208 DASDXX010000000
VERSION     DASDXX010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.208"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            51..557
                     /locus_tag="U0280_002557"
     CDS             51..557
                     /locus_tag="U0280_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB-like nuclease domain-containing protein"
                     /protein_id="HEM2272480.1"
                     /translation="MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDG
                     FTQPIVCYPLEDSDKYEIIDGFHRYTIMRTSKRIRERENEFLPVVILEKDTVNRMAST
                     IRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLD
                     KEFSHTSD"
     gene            579..1310
                     /locus_tag="U0280_002558"
     CDS             579..1310
                     /locus_tag="U0280_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2272481.1"
                     /translation="MKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK
                     TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAI
                     EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDE
                     TGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAP
                     ELKDLPEMQDEYRRPMMLLISATKQ"
     gene            complement(1359..1598)
                     /locus_tag="U0280_002559"
     CDS             complement(1359..1598)
                     /locus_tag="U0280_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HEM2272482.1"
                     /translation="MWIYILVGIICLLAGLAGGFFIARRYMMSYLKNNPPINEQMLQM
                     MMAQMGQKPSQKKINQMMSAMNKQQEKEKPKKTKK"
     gene            complement(1819..3813)
                     /gene="tkt"
                     /locus_tag="U0280_002560"
     CDS             complement(1819..3813)
                     /gene="tkt"
                     /locus_tag="U0280_002560"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2272483.1"
                     /translation="MFDNTDSLAVNTIRTLSMDAIQKANSGHPGLPMGAAPMAYALWS
                     RVLNTNPKNSHWFNRDRFVLSAGHGSMLLYSLLHLSGFKLELEDLKNFRQWESKTPGH
                     PEYRYTDGVDATTGPLGQGIAMAVGMAMAERHLEAKYNKDGFPVVDHYTYALCGDGDL
                     MEGVASEAASYAGHQQLGRLVVLYDSNDISLDGDLDKSFSENVKQRFEAYGWEHLLVK
                     DGNDTAEILAAIEKAKQNTSQPTMIEVKTVIGFGAPNAGTSKVHGAPLGDEGILEAKK
                     AYGWNYEEKFFVPEEVTARFKETIGERGEKAETAWNELFASYKAEYPELAKQLEDSLN
                     NKLPADWDEDLPVYDDSKALASRASSGEVINALAGKIPTIFGGSADLAGSNNTTIKTD
                     GEFTKATPAERNIWFGVREFAMGAALNGMALHGGLQVYGGTFFVFSDYVRAAIRLSAI
                     QHLPVTYVMTHDSIAVGEDGPTHEPIEQLASLRAMPGLSVIRPADGNEVVEAWKLAIT
                     STSTPHVLVLTRQGLPTLPNSAKLTAEGVKKGAYVISPAKGDVPEAIILASGSEVNLA
                     IEAQKELQAQGTDVSVVSVPSFDLFEQQSAEYKESVLPNAVRKRVAVEMGASFGWERY
                     VGLDGKVIGIDKFGASAPGETVIKNYGFTVENVVNTVKSL"
BASE COUNT         1254 a          793 c          675 g         1210 t
ORIGIN      
        1 aaagaaaaaa cgcattagag aaatataata atattttatg aggtgaacta atgaattaca
       61 agagcccagt atatagcgtt actcccattc actacacaaa attacaagca aataattata
      121 atcccaacac tgtccccgca accgaactca aactacttga aaaatcaatt tgggaagatg
      181 ggtttacgca accaattgtt tgttatccct tggaagacag cgataaatat gaaataatag
      241 atgggttcca ccgttacact atcatgagaa cctctaaacg aattcgagaa cgagaaaatg
      301 aattcttacc agtagtcatc ttagaaaagg acaccgtgaa tcgaatggcc tctacaatac
      361 gtcataatcg tgcgcgcgga tttcataatg tcgaattaat gtccaacatt gttagtgaac
      421 ttgtagatag cgggatgtcc gatagttgga ttatgaaaaa tattggaatg gatgctaatg
      481 aaatcttacg cttaaaacaa gtgagcggac ttgctcacct cttcttagat aaagaattca
      541 gtcacacatc tgattaattg atgaaaagag gtttaataat gaaagaaaat aaatacgatg
      601 acaaacattt tttcgaacaa tatagccaaa tgcctcgctc gaaagaagga ttaaaagcag
      661 ctggtgaatg gcatgaactt aaaaaaatgc ttcctgattt taaccagaaa acagtccttg
      721 atttagggtg tggctttgga tggcactgta tctatgcagc tgaacatggt gcaaaaaaag
      781 tacttggtat cgatttatcc gaaagaatgc ttactgaggc taaacgaaaa actacatcgc
      841 cagtggtttg ttacgagcaa aaagccatag aagatatagc tattgaacca gatgcataca
      901 atgttgttct gagttccctt gcacttcatt acattgcttc ttttgacgac atttgtaaga
      961 aagtctatat taacctaaaa tctagtgggt ctttcatttt ctctgtagaa catccggtat
     1021 ttacggcaga tggaagacaa gattggtata cggatgaaac aggtaacaaa ttacattggc
     1081 ccgttgaccg atattttaat gaatctatgc gaacaagcca ttttcttgga gaagatgtcc
     1141 aaaagtatca ccgaacagtt actacttaca tccaaacatt actgaaaaat ggctttcaaa
     1201 ttaatagtgt tatcgaaccg gaaccagctc ctgaattaaa agatttaccc gaaatgcaag
     1261 acgaataccg ccgcccaatg atgctactca tttcagcaac gaaacaataa taaaaaaccc
     1321 cttctaaatc aatagaaggg gtttactttg ttaaaatatt atttcttagt tttctttggt
     1381 ttttcttttt cttgctgttt gttcatcgca ctcatcattt gattgatttt cttttgtgat
     1441 ggtttttgac ccatttgtgc catcatcatt tgtaacattt gttcgttaat tggcggattg
     1501 ttttttaaat agctcatcat gtaacgtctt gcaataaaga atcctcccgc aagaccagct
     1561 agtaaacaaa taatgccgac aagaatgtaa atccacatag tctcttttct cctccttgaa
     1621 acaaaatcct cttttattgt acttgattta tattaaacag acaatacttt tcaagaaaac
     1681 ttatcatcta gatcaattta tcaataaaag ctgcaaacaa cctcgtaatt ataccattaa
     1741 tggtactacg gcgcaatcta aaaaaagcat aaaaaaacag accgctctag aaaaattagc
     1801 aacggtctga ttgtttaatt aaagtgattt tactgtatta actacgtttt caacagtaaa
     1861 gccgtaattc ttaataactg tttcacctgg agcagaagca ccaaatttgt caattccgat
     1921 aactttacca tctaaaccaa cataacgttc ccatccaaag ctagcgccca tctctactgc
     1981 tacacgtttt ctaacagcat tcggtaatac actttctttg tactcagcag attgttgctc
     2041 gaatagatca aatgatggca cactgacaac tgatacatct gttccttgag cttgaagttc
     2101 tttttgcgct tcaatagcta agttaacttc agaaccactc gctaggatga ttgcttctgg
     2161 cacgtcacct ttagctgggg aaataacata agcacctttt ttaacgcctt ctgcagttaa
     2221 tttagcagaa tttggtagtg ttggtaggcc ttgacgagta agaacaagta catgcggtgt
     2281 agatgtagaa gtgatagcaa gtttccaagc ctccacaact tcatttccat cagcaggacg
     2341 aataacagaa agccctggca ttgcacgtaa gcttgcaagt tgttcgattg gctcatgtgt
     2401 tgggccatct tccccaactg caatactatc atgcgtcatt acataggtta ctggtaaatg
     2461 ttgaatagct gataaacgaa tagcagcacg tacatagtca gagaatacga agaatgtacc
     2521 accgtatact tgtaatccgc cgtgaagtgc cataccattt aatgcagcgc ccatcgcaaa
     2581 ttcacgaaca ccaaaccaaa tgtttctttc agctggagtc gcttttgtaa attcaccgtc
     2641 tgttttaatt gttgtattat tcgaacctgc aaggtcagca gatccgccaa aaatagttgg
     2701 gatttttcca gctaacgcat tgataacttc tccactggaa gcacggctag caagtgcttt
     2761 tgaatcatca tatactggaa gatcctcatc ccaatcagct ggtaacttgt tgttcaagct
     2821 atcttctaat tgtttcgcaa gctctggata ttctgcttta taggaagcaa ataactcatt
     2881 ccaagctgtt tctgcttttt caccacgttc gccaattgtt tctttaaagc gagcagtaac
     2941 ttcttcagga acaaagaatt tctcttcgta gttccaacca taagcttttt tcgcttctaa
     3001 aataccttca tcgcctagtg gagcaccgtg aactttactt gtaccggcat ttggagcacc
     3061 aaaaccgata acagttttca cttcaatcat agtaggttga gaagtgtttt gtttcgcttt
     3121 ttcgattgct gctaaaattt cagctgtatc attaccgtct tttactaata aatgttccca
     3181 gccataagct tcaaagcgtt gttttacatt ttcagagaaa gatttgtcta aatcaccatc
     3241 aagagagata tcattggaat catagagaac aactaatctt cctaattgtt gatgacctgc
     3301 ataagaagcc gcttctgaag caacaccttc cattaagtca ccatctccgc atagtgcata
     3361 agtataatga tccactaccg ggaaaccatc tttattatat ttcgcttcta aatgtctttc
     3421 tgccatagcc ataccaacag ccatcgcaat accttgacca agtggaccag tagttgcgtc
     3481 tacaccatct gtataacgat attctgggtg accaggagtt ttactttccc attgacggaa
     3541 atttttaaga tcttctaatt ctaatttgaa tccacttaag tgtaataaac tatataaaag
     3601 cattgagccg tgtccagcag aaagtacaaa acgatctcgg ttaaaccaat gtgaattctt
     3661 agggttagta tttaatacac gcgaccaaag tgcgtaggcc attggtgctg ctcccattgg
     3721 taatcctgga tgaccagaat ttgctttttg aattgcgtcc attgataatg tacgaattgt
     3781 attcactgct aaactatctg tgttatcgaa caaatgaaac atcctctctt caatataatt
     3841 ttaactactt ttaataataa gcctaaaaag caattaacac aactaataat tgctttaaat
     3901 tgcttaattg attggtattt ttgttcattt gc
//
LOCUS       DASDXX010000209         3898 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.209, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000209 DASDXX010000000
VERSION     DASDXX010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.209"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(181..254)
                     /locus_tag="U0280_002561"
     tRNA            complement(181..254)
                     /locus_tag="U0280_002561"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(218..220),aa:Arg,seq:tct)
     gene            complement(365..889)
                     /locus_tag="U0280_002562"
     CDS             complement(365..889)
                     /locus_tag="U0280_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM2272484.1"
                     /translation="MKLLVVSDSHSERDCLIHLKEKYENTVDAMIHCGDSELEADDPA
                     IQGFHTVRGNCDFGGGFPNDWVGEVDGYRIFTTHGHLYNIKMTLMNLRYRARELNADF
                     AFFGHSHELGVDMLDDTIILNPGSISLPRGRIRVKTYALIDSTPEGIQVRFMDRDDNE
                     LTDLTQTFPLTKHN"
     gene            complement(926..1537)
                     /locus_tag="U0280_002563"
     CDS             complement(926..1537)
                     /locus_tag="U0280_002563"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HEM2272485.1"
                     /translation="MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETG
                     TTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGIAHDDAKNNEK
                     LLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFF
                     LPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLAEVVEKVTKK"
     gene            complement(1541..2287)
                     /gene="rph"
                     /locus_tag="U0280_002564"
     CDS             complement(1541..2287)
                     /gene="rph"
                     /locus_tag="U0280_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEM2272486.1"
                     /translation="MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVE
                     TKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVV
                     DLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLA
                     ATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAEL
                     IALGKKGISELIEIQKETLGDKVTARIKGE"
     gene            complement(2300..3100)
                     /gene="racE"
                     /locus_tag="U0280_002565"
     CDS             complement(2300..3100)
                     /gene="racE"
                     /locus_tag="U0280_002565"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEM2272487.1"
                     /translation="MKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPR
                     DKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAA
                     LKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIA
                     KKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALL
                     DYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK"
     gene            3248..3742
                     /locus_tag="U0280_002566"
     CDS             3248..3742
                     /locus_tag="U0280_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YslB family protein"
                     /protein_id="HEM2272488.1"
                     /translation="MVIMVYESGVSEMTENEQNKNEEKALVPSFGLDLLRDYLIPELL
                     GDEAPHIMYWAGKDLARKFPLASLEEVAEFFEEASWGNFSILKEKKDEMRLLLEGETV
                     AARFRTQEEPTFKLEAGFIAEQLQSQKKLYTESYDEIDKRKKQVTIIVKWDRKETIDN
                     EERY"
BASE COUNT         1045 a          789 c          751 g         1313 t
ORIGIN      
        1 aatagatgct tttttcacat taaaaatgga tggaaatagc acaaattttg tcacaaatgt
       61 catgaaaaat acggaataaa acagatatta taagatataa aaaaatctct aaaacatcca
      121 tccaaccttt aatatcaagg tttttcaacg ttttagagat ttctttaata tagctattta
      181 cgtcctgaga gggattcgaa cccccgaccg acggcttaga aggccgttgc tctatccagc
      241 tgagctatca ggacaaatgg cactgttttt tcaacagcca aataccattt tatgtttaaa
      301 tcgcttgttt gtcaatggtt ttctttaagt tattgcattt tttctttttc gggtgtcttt
      361 tgacctagtt atgcttcgtt aatgggaagg tttgggttag gtccgttagt tcgttgtcgt
      421 cccggtccat gaatcgaact tgaatgcctt ctggtgttga atcgataaga gcgtatgttt
      481 tgacacggat gcgtcctctt ggtaaggaaa tgcttcctgg gtttaaaatg atggtgtcgt
      541 ctagcatgtc tactcctagt tcatgcgagt gaccaaaaaa ggcaaaatct gcgtttaatt
      601 cacgtgcgcg atatcgtaaa ttcatgagtg tcattttgat gttatagaga tgtccgtgtg
      661 tggtgaaaat gcggtagccg tctacttctc ccacccaatc atttggaaaa ccgccgccaa
      721 agtcacagtt gcctcgaaca gtatgaaatc cctgaatcgc aggatcgtca gcttctaatt
      781 cagaatcccc acaatggatc atcgcatcga ctgtattttc gtatttttct ttaagatgga
      841 ttaagcagtc acgttctgag tggctgtcgc taactactaa taatttcatt ttgtttcctc
      901 ccccgtgata ctgttactta ttttctcact ttttggttac tttttctact acttctgcta
      961 aatctttttc tagttgttta atggcattag cacggtggct gatttcattc tttttctccg
     1021 ctggaatttc tgccattgtt agaccgaatt ctggtaagaa aaatagtgga tcatagccaa
     1081 agccatttgt gccgcatagt tgttctgcga taacgccctc tacttcaccg gtataaaaag
     1141 atgttttctc agaaggtgtg gctacagcaa gtgtacagtg gaaacgagcc gttcttttgt
     1201 ccggttcaac accttctaag tttttaagta gtttttcgtt atttttggca tcatcgtgag
     1261 cgatacctgc ataacgtgcg gaatagacgc caggagctcc gtcaagcgcg tctacgatta
     1321 aaccagaatc atcagcaatg acggtttgat ttaacacgct agcgaccgtt tctgctttaa
     1381 gagcggcatt ttcggcaaag gttgttccag tttcttctat ttcaccaatt tctggaaaat
     1441 cagcaagggt tgctacttcg atattaaatt tcgcaaagat tttttcgaat tcttttgctt
     1501 ttcctttgtt tgcggtagcg ataataattt tactcatttt ttattctcct ttaatccgcg
     1561 ctgtgacttt gtctccgagt gtttcttttt ggatttcgat taattcgcta attccttttt
     1621 tacctaaggc aattagttca gccagttctg tttccgagaa tgtagcttct tcgccagttc
     1681 cttggagttc tacaaaggcg ccgctacctg tcatgataat attcatatct acttgcgctg
     1741 cgctgtcttc tacgtagtta aggtcaagta ctgttccacc ctcttctaaa acacctacgc
     1801 tagttgctgc taggaaatct ttgacaggaa atttagcaaa tggtacagct tcgtctagtt
     1861 tggcgattgc catgaccatc gcgataaatg cgccggtgat agaagccgta cgagtacctc
     1921 catctgcttg gataacgtcg caatcgagcc aaattgttct ttcaccaagg gcatctaaat
     1981 caacaacagc acggagcgca cgtccgatta aacgctgaat ttccattgtt ctgccagtaa
     2041 ctttaccttt tgaagattca cggatatttc gggtgtttgt tgctcgtggt aacatcgagt
     2101 attctgcaga aatccagccg cggccttctc ctcgcataaa tggtggcact tttgtttcta
     2161 cacttgcaga acagataact tttgtatttc ctgatgcaat tagcacagaa ccttctggat
     2221 gcattaaata atctggtgtt acttcaatat ttcgtaatgc attactttct cttccatcaa
     2281 ctctcattat tggcacctct tattttccta atttaatatg ttctacagtc atatctggca
     2341 tatttaacca gtcttttgca atatctttga aaatttgtgt cgagcccgta gtgaaaaaac
     2401 ggtgctcaat ttcttcgtct gtagcatcta ataaattatg gtaatccagt aacgcgctaa
     2461 cttcactagc agtttcttct ccggagttaa taacagcaac gccgtctccc ataaaattct
     2521 caataattgg ttttaaaagt gggtaatgcg tacaacccaa aatcaccgta tcaatcttgg
     2581 tactcttcag tggtaagagt gattcggcta ctactttttt tgcaatggcg cttttatact
     2641 cgccagattc tacaacggat acaaatttcg gacatgccag tgaatctact tctactcggc
     2701 ggtttagtcc tttgagcgct gttgggtaag ccatgctttc gactgtacca agtgttccta
     2761 atacgccaat tttgttgttt cttgttgctt tgagagctgc tcttgaacct ggttggatta
     2821 caccaatcac aggaatatcc aatttttcac gaatatcata taatgctgct gctgttgcgg
     2881 tattacatgc aataacgagc attttgatgc cacggtctac tagaaaattg gtcatttccc
     2941 aagtaaactt agctacttct tctttatcgc gtggtccata agggcaacgt gcggtatcac
     3001 ctaaataata tacttgttca tggggtagct gttttagcac ttctcgcact actgtcaaac
     3061 cgcctactcc cgaatcaata aagccaatag cttgtttcac agtctcgcct caatttcttt
     3121 attaatttcc aattttttta tctatacctt ccattttctt attttttgag ctttttcgca
     3181 agtctttttt gagaaaaaag cttttttgtg gaaatttatt tattgtgctt tccattttag
     3241 ggtgattttg gttataatgg tgtatgaaag tggggtatcc gaaatgacag aaaatgaaca
     3301 gaataaaaac gaggaaaaag ctctcgttcc aagttttggt ttagatttac tacgcgatta
     3361 tttaattcct gaactacttg gagatgaagc acctcacatt atgtactggg cggggaaaga
     3421 cttggcacgt aaattcccac tagcgtctct agaagaagta gcagaatttt ttgaagaagc
     3481 ctcttggggt aattttagca ttttgaaaga aaagaaagat gaaatgcgtt tacttttaga
     3541 aggtgaaaca gttgctgctc gtttccgtac acaagaagag cctacattta aactagaagc
     3601 tggctttatt gcagaacaat tgcaatcaca gaagaagctg tatacagaaa gctacgatga
     3661 aattgataaa cgtaaaaaac aagtaaccat tatcgttaaa tgggatcgta aagaaacgat
     3721 tgataacgaa gaacgctatt aaaacaataa gcttgcagta acaaagagaa atcctctttg
     3781 atgctacaag cttattttta tttatcgagt tcaaattggt catgtaaaac ttgggctgct
     3841 tcgaccattt tgcgcgctgg tacgacagtg gaaactttga tttctgatgt gctaatca
//
LOCUS       DASDXX010000210         3863 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.210, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000210 DASDXX010000000
VERSION     DASDXX010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3863
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.210"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            103..606
                     /locus_tag="U0280_002567"
     CDS             103..606
                     /locus_tag="U0280_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2272489.1"
                     /translation="MKKVFITTGTEHYLRQLMANYIGGNVTLLQNFSQSLLYQESTGE
                     KLFQEGAEYRVLQSSGSLKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQS
                     TKLTKAMNMNKFLIISFWDSEVFFHDWKKTPLSKEITNIMKKNNTQSGFSHEDIYHYP
                     EFSHDAK"
     gene            complement(645..1868)
                     /locus_tag="U0280_002568"
     CDS             complement(645..1868)
                     /locus_tag="U0280_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272490.1"
                     /translation="MKMIFDSKALWKERFSAYTTEVMRYLRYMFNDHLLFVLVIGLGA
                     GIFYYAGWVKTLEPTFPVIPLMVILLTASIAISPVATLLKKPDIVYLIVQEKAMDSYF
                     TQAKIASFFMQLYVFVIVLGVCMPMYVEVTKVPYSQFFTLFIVLSMLKVWNIYFGWES
                     MKLEEADTTWMFIRVILNAILIYIALVAAPYISIPLVLVVLVASYYWLRTKTAKVTLR
                     WEYLVDKEEARMNRFYRLVNLFTDVPHLRGTVRRRSYLDFLYQPIPYAKRKTFAYLFS
                     RTFIRTNEYAGLYIRLTVIAVILLVFVQGFYLNIIFSLLFLYLTGFQFIPMLKHYDAQ
                     IMLRLYPINDRYRHRSFIHFLRILLLAQALLFSVIGIAQNGTISGMIILGINLAFVVI
                     FTFLYAPARMKKMYE"
     gene            complement(1852..2604)
                     /locus_tag="U0280_002569"
     CDS             complement(1852..2604)
                     /locus_tag="U0280_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272491.1"
                     /translation="MALVEVEHLTGGYTKRPVLKDISFAIEEKQIVGLIGLNGAGKST
                     TIKHITGLMHPKQGTIKINNHQLVEDTETYRKQFSYIPETPVLYEELTLKEHLELTGM
                     AYGISEEELQARMKPLLKEFRLEKKLNWFPAHFSKGMKQKVMIMSAFLIEPKLYIIDE
                     PFVGLDPLGIQSLLNWMDEMRSKGASILMSTHILATAEKYCDTFIIIHQGEIRAEGTL
                     KDLQTNFEMPGASLDEIYIQLTKEEEADEDDI"
     gene            2765..3187
                     /locus_tag="U0280_002570"
     CDS             2765..3187
                     /locus_tag="U0280_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM2272492.1"
                     /translation="MDDCIFCKIVRGEIPSAKVYEDDEVYAFLDLGQVTEGHTLVIPK
                     KHARNTFDLPDETAAELFRRVPKIARALKEALPIQGLNILNNNEEVAFQSVFHCHIHL
                     IPRYSKSDDFGLKWKDNADWYTQERYQEIAELIAAKVD"
     gene            3217..3579
                     /locus_tag="U0280_002571"
     CDS             3217..3579
                     /locus_tag="U0280_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM2272493.1"
                     /translation="MNKKSLIFGILAGGAIGAAASVLFAPKSGNELRKDIVAKSGEAS
                     VILKELAYNANELIQSVQVLGTEGSTLLKDVSSDIMESVSKWNEEMEPEKKRLKDEIK
                     DMQKTISDLEKTLKKDNK"
     gene            3762..>3863
                     /locus_tag="U0280_002572"
     CDS             3762..>3863
                     /locus_tag="U0280_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM2272494.1"
                     /translation="MRCLKSINTERRDEFNRLFLKGILVWLAAVCICF"
BASE COUNT         1321 a          733 c          652 g         1157 t
ORIGIN      
        1 aaccaaacaa attgcctatc agctgtttca attatgaaaa acgtggaaaa taaaggtgta
       61 atcatttttc ttaatggaat aaaactgaaa gaaggactta ttatgaaaaa agtatttatc
      121 acgactggaa cggagcacta tcttcgtcaa ttaatggcaa attatattgg cggaaatgtg
      181 acacttctac aaaacttttc ccaatcactt ttgtatcaag agtcgactgg tgaaaaactt
      241 ttccaagaag gcgctgagta tcgagtattg caaagcagtg gttccttaaa aggttttgga
      301 gtagtcgtct ttgaatatat ccacctccgc gatgaagaaa tccctatttt cttgcaaatg
      361 tatcaacgag cgagtctgca ttttagtgaa acgcctggct tgcaaagtac aaaactcaca
      421 aaagcgatga atatgaataa atttttaatt atttcctttt gggattctga agtatttttt
      481 catgactgga aaaaaacacc tttatccaaa gaaattacca atatcatgaa aaaaaataat
      541 actcaatctg gattctcaca tgaagatatt tatcattatc cagaattttc ccatgatgct
      601 aaataggaaa aagcgatttg gaccactcat ccaaatcgct ttttttattc gtacattttt
      661 ttcattctgg ctggtgcata aaggaacgta aagataacta caaaagccaa attaattcct
      721 aaaatgatca tcccactgat ggtcccattt tgtgcaatgc caatcacact aaagagtagt
      781 gcttgagcga gtaacaaaat ccgtagaaag tgaataaaac tgcgatgacg ataacgatca
      841 ttaatcggat aaagtcgtag cataatttgt gcatcataat gttttaacat cgggatgaat
      901 tgaaaaccag ttaaatacaa aaatagtagt gagaaaatga tatttaaata aaaaccttga
      961 acaaacacga gtaaaatcac ggcaattacg gtaagtctaa tgtaaagacc ggcatattca
     1021 tttgttctaa taaatgtccg actgaacaaa taagcaaatg tttttctttt cgcataagga
     1081 attggttgat aaagaaaatc gagataactc cgtctccgaa ccgttcctcg caaatgaggt
     1141 acatccgtaa atagattcac taaacgatag aaccgattca tccgcgcttc ttctttatcc
     1201 actaaatatt cccagcgtaa agttactttt gccgttttag ttcgaagcca gtagtaactc
     1261 gccacaagta ctaccaaaac caaaggaata gaaatgtaag gtgcggcgac taacgcaata
     1321 taaattaaaa tagcattaag gataacacga ataaacatcc acgttgtatc cgcctcttct
     1381 aatttcatac tttcccaacc aaaataaatg ttccacactt ttagcatact gaggacaata
     1441 aacaaagtga aaaactggct gtacggaacc tttgtcactt ccacatacat cggcatacaa
     1501 accccaagca caattacaaa aacatataat tgcataaaga agctcgctat ttttgcttgg
     1561 gtaaaataac tatccattgc tttttcctgt acaattaagt aaacaatatc cggttttttc
     1621 agcaacgtgg caacaggact aatggcaatt gaagcagtga gtaaaataac cattaacgga
     1681 ataacgggaa atgtgggttc aagcgtcttc acccaaccag cgtaataaaa aatccccgct
     1741 ccaagtccaa tcacaagcac aaaaagcaaa tgatcattaa acatataacg aagatagcgc
     1801 atgacttcgg tcgtataggc actaaaacgt tctttccaaa gcgctttgct gtcaaatatc
     1861 atcttcatca gcttcctctt cctttgtcaa ctgaatgtaa atttcatcaa gtgaagctcc
     1921 cggcatttcg aagtttgttt gcaagtcttt cagcgttccc tctgcgcgaa tctcgccttg
     1981 atgaataata atgaacgtat cgcaatattt ctcagccgtt gcaagtatat gcgttgacat
     2041 taaaatgctt gcacctttac tacgcatttc gtccatccag ttaagtaatg actgaatacc
     2101 aagcggatct aaaccaacaa aaggctcatc aatgatatat aatttaggtt caattaggaa
     2161 agccgacata atcattactt tttgtttcat ccctttagaa aaatgggctg gaaaccaatt
     2221 aagttttttc tctaaacgaa actcctttaa aagaggcttc attcttgctt gcagttcttc
     2281 ttctgatata ccataagcca tacctgttaa ttctaaatgt tcttttaagg ttaattcttc
     2341 atataataca ggtgtttcag ggatataaga gaattgcttt ctatatgttt ctgtatcttc
     2401 cactaattgg tgattattga ttttaatcgt tccttgttta ggatgcatta gaccagttat
     2461 atgcttaatg gtcgtacttt tccctgcccc gtttagccca attaagccaa caatttgttt
     2521 ttcttcaatc gcaaacgaaa tatcttttaa gactggacgt ttggtatacc cgcccgtcag
     2581 gtgttcaact tctactaaag ccatttccat acctccttac gtaatcttta gttaataata
     2641 gcatattcgt cccttgaact gtcaaaataa tccaccatct actatctaac acatgctttt
     2701 cactgctttt tatgttaaat taaaatagta cataattata tgtaatgaaa ggtggtcata
     2761 cttaatggac gattgcattt tctgcaaaat agttcgtggc gaaattcctt ctgccaaagt
     2821 gtatgaagat gatgaagtat atgctttcct cgatttaggc caagttacag aaggtcatac
     2881 actcgtaatt cccaaaaaac atgctaggaa cacattcgat ttacccgatg aaacggccgc
     2941 tgaattattc cgccgcgtac caaaaatcgc gcgggcatta aaagaagctt taccgattca
     3001 aggattaaat attttaaata ataatgaaga agttgctttc caatctgttt ttcattgtca
     3061 tatccattta ataccaaggt atagcaaatc agacgacttt gggttaaaat ggaaagataa
     3121 cgcagactgg tatacacaag aacgttacca agaaattgct gaacttattg cagcaaaagt
     3181 agactaaaat gactttatgg atggagtgga gtataaatga ataaaaaatc acttattttc
     3241 ggtattttag ctggtggggc aattggagcc gcagcctcgg tattatttgc tccaaaatcc
     3301 ggcaatgagc ttcgaaaaga tattgtcgct aaatcaggtg aagcaagtgt tattttgaaa
     3361 gaactcgcat ataatgcaaa tgaacttatc caatccgttc aagttctcgg cacagaaggt
     3421 tccactttat taaaagatgt ttcttctgac atcatggaat ctgtttccaa atggaatgaa
     3481 gaaatggaac ctgagaagaa acgcctaaaa gacgagatta aagatatgca aaaaacaatt
     3541 tccgacttag aaaaaacgct aaaaaaagat aataaataag tagagaaact gggcgactgc
     3601 tcagtttttt tatttgtcta aagtcccttt caaaaaaacg tcataattag acaataaatt
     3661 ctctaaaaaa agcttgaatt ttgtagcatt tgagcataca atactatggt gccttctgat
     3721 ggaagagcac tattttagct ataactggag gaaagcttac aatgcgctgc ctaaaatcaa
     3781 tcaacacaga gcgacgagac gaatttaatc gacttttcct aaaaggaatt cttgtctggc
     3841 tagctgccgt atgtatttgt ttt
//
LOCUS       DASDXX010000211         3844 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.211, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000211 DASDXX010000000
VERSION     DASDXX010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.211"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            80..2074
                     /locus_tag="U0280_002573"
     CDS             80..2074
                     /locus_tag="U0280_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM2272495.1"
                     /translation="MTDYPSIFEPLTVKRMTIKNRVIMPPMGTNLAGLNGEFLEEHMN
                     YYEQRAKGGTGLITIENACVDFPYGTNGTTQLRIDNDQYIPGFYKLTERLHKHGTCVS
                     IQINHAGASAYPARLNGLQPVSASDIPSKKGGTVPRPLTVEEIYEIVNKYGDAARRAQ
                     QAGFDAVEIHGGHSYLLCQFLSPLYNKRTDEFGGSPENRARIVKLILEKVRAEVGPFF
                     PIVLRFSADEFTEGGNHLEDILELLDYCQEEADILNVSAAINDNLYLQIDQMNLEDGW
                     RSYLAKAVKDKFNKPTITSGNIRSPKAAEKILSEGYADLLAMGRGLIAEPNWVNKVAT
                     GQEDMLRKCISCNIGCADHRISKSKPIRCTVNPDIIHEDKYKETKVTRPTNVVVIGGG
                     TAGLEAACTAAEVGCNTTLIEASEQTGGLARAIANLPDKSRIADFPNYLANRAEKLTN
                     LKVITGTKADTALIDTFNPDVVVNATGSKPLLPPIKGLHDVIDKEGSKVHSIFGLISN
                     IDDFTEFSNKKVAVIGGGAVGLDVVEYFSERGSDVTIVEMMPLLGKDLDMITRLSMMD
                     IIEKNNVDVQTETALTEVAADHFKVKHDGVDAEIPFDYGFVCLGMRPERPLMEELAAY
                     GKEKQIEIVNIGDSAATRKILEGVREGRNILTTLEKIGSL"
     gene            2174..3049
                     /locus_tag="U0280_002574"
     CDS             2174..3049
                     /locus_tag="U0280_002574"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM2272496.1"
                     /translation="MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYV
                     YLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN
                     DDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIF
                     NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFE
                     GETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIW
                     THKEMPVDYIKEILF"
     gene            3115..>3844
                     /locus_tag="U0280_002575"
     CDS             3115..>3844
                     /locus_tag="U0280_002575"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEM2272497.1"
                     /translation="MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDV
                     VEWRVDFFEDVKDLAKVEAALDEIRTILPETPILFTFRSAKEGGELAVGDEFYFELNE
                     TLASTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTR
                     MEALGADLPKIAVMPKSAGDVLTLLDATNTVSEKANQPIITMSMAGTGVISRLAGEVF
                     GSAMTFGAAKKASAPGQIDVNELRH"
BASE COUNT         1278 a          721 c          840 g         1005 t
ORIGIN      
        1 gagaaataag attgtgcatt attgaacgtg aataatgtaa caaatcattt gctgagatta
       61 tagtcgcagg aggcttatta tgacagatta tccgagtatt tttgaaccat taactgtaaa
      121 aagaatgacc attaaaaacc gtgtgataat gccaccaatg gggacaaacc tagctggatt
      181 aaatggcgaa tttttagaag aacatatgaa ttactacgaa caacgcgcaa aaggtggaac
      241 aggtctaatc actattgaaa acgcttgtgt agattttcct tatgggacaa acggaacaac
      301 gcaacttcga atcgataatg accaatacat ccctggattt tacaaattaa cagaacgtct
      361 tcataaacat ggaacttgtg tatccatcca aatcaaccac gctggtgcat cagcttatcc
      421 agcacgtttg aatggacttc aaccagtttc cgcgtcagat attccatcta aaaaaggtgg
      481 tactgtaccg cgcccgctta cggtagaaga aatttatgaa atcgtcaata aatatggtga
      541 tgcagctaga cgtgcccaac aagctgggtt tgatgcagtc gaaatccacg gcggacactc
      601 gtacttacta tgccaattct tatcgccact ttataacaaa cgtacggatg aatttggtgg
      661 ctcgcctgaa aatcgcgccc gtatcgtcaa actaattttg gaaaaagtcc gcgcggaagt
      721 tggtccattt ttcccaatcg tacttcgttt tagtgcagat gaatttacag aaggcggcaa
      781 ccacttagaa gatattttgg aactgctaga ttattgccaa gaagaagcgg atattttgaa
      841 tgtatcagcg gcaataaatg acaacctata cttgcaaatt gaccaaatga acttggaaga
      901 tggctggaga agctaccttg caaaagcggt gaaagataaa tttaacaaac caacgattac
      961 ttccggtaac attcgcagtc caaaagcggc agagaaaatt ttgtcagaag gatatgcgga
     1021 cttgcttgcg atgggacgtg gcttaatcgc tgagcctaac tgggtgaaca aagtggcaac
     1081 tggccaagaa gacatgcttc gaaaatgtat ttcttgtaat atcggttgcg cggatcaccg
     1141 aatttccaag tcgaagccaa tccgttgtac ggtgaatcct gatattattc atgaagataa
     1201 atacaaagaa acaaaagtga ctcgtccgac caatgttgtc gtaattggcg gcggaacagc
     1261 agggcttgaa gcagcttgta cggcggctga agttggctgt aacacaacgc taattgaagc
     1321 gagtgaacaa actggtggct tggcgcgtgc cattgccaac cttccagaca aaagtagaat
     1381 tgccgatttc cctaattatt tagcgaaccg agcagaaaaa ttaaccaatt taaaagttat
     1441 tacaggcact aaagctgata ctgcgcttat tgatacattt aatcctgatg tggtagtcaa
     1501 tgccacagga tccaaaccat tacttccacc gattaaaggt ttgcatgacg tgattgacaa
     1561 agaaggcagt aaggttcatt cgatttttgg acttatttca aatatcgatg actttaccga
     1621 atttagtaac aaaaaagttg cagttatcgg cggtggtgca gttggacttg atgtggtcga
     1681 gtacttctca gaacgcggct cggatgttac aattgtagaa atgatgccac ttcttggaaa
     1741 agacttagat atgattacac gtctttcgat gatggacatt atcgagaaga ataatgttga
     1801 tgtgcaaaca gaaactgcat taaccgaagt agcagcggat catttcaaag tgaagcacga
     1861 cggagtagac gccgagattc catttgatta cggctttgtc tgcctaggaa tgcgaccaga
     1921 acgcccactt atggaagaac ttgcggcata cggaaaagaa aaacaaattg aaatcgtaaa
     1981 tattggcgac agcgctgcga caagaaaaat cttggaaggc gttcgcgaag gaagaaatat
     2041 tttaactaca ttagaaaaaa ttggctcttt gtaatccgaa ctggcaaggc ggagtccgtc
     2101 ttgccacatt cgctctttat ataagttcac attttcacaa ataaacctta atttggaaag
     2161 gaacgatgtt attatgacaa acaaaatcac agaaagaatt acaggacaca cagaattaat
     2221 cggtttaatc gccactccaa tcagacacag tttatcacca acaatgcata atgaagcttt
     2281 tgcaaaactc gggcttgatt atgtatacct tgcttttgaa gttggagaca aagaactgaa
     2341 agatgttgta caaggattcc gcgcaatgaa cttacgcggc tggaacgttt ccatgccaaa
     2401 taaaacaaat atccataaat atttagataa actttctcca gcagctgaac ttgtaggggc
     2461 agtaaataca gttgttaatg atgacggcgt gttaactgga cacattacag acggcactgg
     2521 ttatatgcgt gcgttaaaag aagctggaca tgatattatc ggcaaaaaaa tgacgatttg
     2581 cggcgctggt ggtgcggcaa cagctatttg tatccaagct gctcttgacg gcgtaaaaga
     2641 aatttctatt ttcaacagaa aagacgattt ttacgcgaat gcagaaaaaa cagtagaaaa
     2701 aatcaattcg aaaacagatt gtaaagcaca attatttgat atcgaagacc acgaacaatt
     2761 acgtaaagaa atcgcagaaa gtgttatttt cacgaacgcg actggcgttg ggatgaaacc
     2821 tttcgaaggc gaaacacttt taccaagtgc cgatatgctt cgtccagaat taatcgtttc
     2881 ggatgttgtc tacaaaccaa ctaaaactag attgcttgaa atcgctgaag aacaaggctg
     2941 tcaaacactt aacggcttag gcatgatgct ttggcaaggt gcgaaagctt tcgaaatttg
     3001 gacacacaaa gaaatgccag ttgattacat taaagaaatc ctattttaaa aacttgcaaa
     3061 agaacaaggt tatcgctaat cttaagacat aatatcgaat gaggagaatt atacatgaat
     3121 aaagtagtcg taaagaatgt tacgtttggt gaaggtgcgc caaaaatttg tgtaccaatg
     3181 gtcggtaaaa cggttgctgc gcttaaagaa gaagcagaaa tgttacaaac aatcgatttg
     3241 gacgttgtcg aatggcgcgt tgactttttt gaagacgtca aagatttagc taaagtggaa
     3301 gctgcgctag atgaaattcg cacaatttta ccagaaacac cgattttatt cactttccgc
     3361 agtgcaaaag agggcggcga gttagctgtc ggtgacgaat tttattttga attaaatgaa
     3421 acactagcta gcactggcaa aattgattta gttgacgtgg aacttttcaa tgaagaagcg
     3481 gatgttttac gtttaatcga aacagcccac aaaaacaatg taaaagtagt tatgtcgaat
     3541 catgattttg ataaaacacc tgcgaaggaa gaaatcgttt ctcgattaac tcgcatggaa
     3601 gcacttggcg cggaccttcc gaaaatcgcc gtcatgccaa aatctgctgg agacgtacta
     3661 actttactag atgcaacgaa tactgtatct gaaaaagcta atcaaccaat cattacgatg
     3721 tcaatggctg gaactggtgt catcagccgt cttgctggcg aagtatttgg ctctgcaatg
     3781 acatttggcg ctgcgaaaaa agcatcggct cctgggcaaa ttgatgttaa tgagttacgt
     3841 cacg
//
LOCUS       DASDXX010000212         3835 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.212, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000212 DASDXX010000000
VERSION     DASDXX010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3835
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.212"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            213..521
                     /gene="spoVG"
                     /locus_tag="U0280_002576"
     CDS             213..521
                     /gene="spoVG"
                     /locus_tag="U0280_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation regulator SpoVG"
                     /protein_id="HEM2272498.1"
                     /translation="MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLF
                     VAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
                     "
     gene            640..948
                     /gene="spoVG"
                     /locus_tag="U0280_002577"
     CDS             640..948
                     /gene="spoVG"
                     /locus_tag="U0280_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation regulator SpoVG"
                     /protein_id="HEM2272499.1"
                     /translation="MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLF
                     VAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
                     "
     gene            1335..2708
                     /gene="glmU"
                     /locus_tag="U0280_002578"
     CDS             1335..2708
                     /gene="glmU"
                     /locus_tag="U0280_002578"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEM2272500.1"
                     /translation="MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTL
                     NVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCG
                     DTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDAT
                     EKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRM
                     ESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIE
                     PGVMLHGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRP
                     ESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNK
                     AKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYA
                     KHLNHGK"
     gene            2759..3715
                     /locus_tag="U0280_002579"
     CDS             2759..3715
                     /locus_tag="U0280_002579"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM2272501.1"
                     /translation="MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDG
                     EIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYAR
                     QDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDY
                     FSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEG
                     KVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVV
                     TNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE"
     gene            complement(3759..>3835)
                     /locus_tag="U0280_002580"
     CDS             complement(3759..>3835)
                     /locus_tag="U0280_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2272502.1"
                     /translation="LKRYAPKLDEWFYLACPATWGKLN"
BASE COUNT         1257 a          600 c          847 g         1131 t
ORIGIN      
        1 tcaaaaaaaa aaactttttt ttagattaca attcacaaag ttgtcaaatt tagttttttt
       61 tattattatg ttcataggga agaattttac gtgaatattg cttgctttat aaaagtaatt
      121 ttttctatgg gggaattttt ctcgagtgtg tacttaagtt gcatgtgagc attgtttact
      181 agcagcgcaa ctagattaag gtggtgaaga taatggagat tacagatgtg agattacgac
      241 gtgttgagac agatgggaga atgaaagcta tttcttcaat aacgattgac ggtgagtttg
      301 ttattcacga cattcgtgtc atcgatggca acgagggttt gttcgtagct atgcctagta
      361 aacgtacgcc ggatggtgag tttagagata tcgctcatcc aattaactca ggcacccgtg
      421 caaaaattca agaagccgtt ttagctgctt atgaagtagc ggacgaacca gcagtaaacg
      481 aagaaagttc tgcagacgaa agtattgtag aagaaaacta aaaaatcctc ggttagggag
      541 aacgttgttg ggaacagttg ggggataaat acctaagatt ttagctggga taagcagatt
      601 ctttttgaaa gaggcaaatg ggataaggag tgactaataa tgcaagtaac agatgtgaga
      661 ttacgtcgtg tagaaactga tggaagaatg agagcgattg cttcaatcac tttagatgag
      721 gaatttgtag ttcatgatat tcgcgttatt gatgggaata acggtttatt cgtagctatg
      781 ccaagtaaac gtggtgttga cggtgaattc cgtgatatcg ctcacccaat caattctgac
      841 actcgtgcaa aaattcaaga agtagtttta gctgaatatg agcgcgttgg tgaagaagaa
      901 gcaactgcag taacagaaga agaatctgaa tccgtttctg ctgaataatt taaaattttc
      961 aagggctagc tgcgtgctag ccctttttgt gtacatgaag catgaaaaaa atcataaata
     1021 gccttggtct tctatttttg ctatggtata attaatagca gattataaaa cagggaggag
     1081 aattttaaat gatgttgcaa aaacaggtcc attttagaaa acttttttgt ggcataagtg
     1141 taaattcttc ttttagtaag caaataaata atcatactat atctttcgga attttcgaac
     1201 aaataaaact ttaaattgaa tctttaccta aaaaaagtag gtaaggtttt ttatttgggc
     1261 gcattcttga aaaaatgtaa attttacgtt atcattcata gtggatgaat agtgaatatt
     1321 ggaggttcta tataatgtca aaacgatatg ctgtagtgct tgctgctggc caaggcacac
     1381 ggatgaaatc aaaactttac aaagtattgc atcctgtttg tggaaaacca atggtcgaac
     1441 atgtagtaga tcaaatttcg acgcttaatg ttgataaagt ggttacaatt gtaggtcacg
     1501 gagctgagaa agtacaagag catttagctg gtaaaagcga gtttgtaaag caagaagagc
     1561 aactcggaac ggcgcatgca gtactgcaag cgaaagcgga acttgcaggt aaagatggtg
     1621 tgacgctcgt tgtttgtggg gacacgcctt taatcgaagc tagtacgatg gaagctttac
     1681 tgaaatatca ccatgaaaaa cgtgcaaaag caactattct tacaacggtt attgaagatc
     1741 ctacaggtta tggtcgtatt attcgtgatg acctaggcat tgtagaaaaa atcgtagaac
     1801 ataaagatgc aacagaaaaa gaacaacgga tttcggaaat taacactggg acatattgct
     1861 ttgataataa agctcttttt gaagcgttag agaatgtttc taacgataat gtgcaaggag
     1921 aatattactt accagatgtt attaagattt taaaagattc ggatgaagtc gttgcggctt
     1981 acagaatgga gtcttttgaa gagtcacttg gagtgaacga ccgaattgcc ctagctgaag
     2041 catccagatt aatgcaacgt cgaattaacg aaaatcatat gcgtaatgga gtaacgcttg
     2101 ttaatcctga aaacacgtat attgatatag atgtaaaaat tggtcaagat acagtaattg
     2161 aaccaggagt tatgcttcat ggggaaactg taatcggtga tgattgcgtg gttacaagcg
     2221 gctcggaaat cgtaaacagt gttatcggtg aacgagtaca cgtcagaact tcttctattt
     2281 tcgaaagtaa agttggcgat gacgttcaaa ttggcccata tgcgcaccta agaccagaat
     2341 ctgacattca cgatcatgtg aaaatcggga actacgtcga aacgaaaaaa gcagtggttg
     2401 gtgaaggaac taaattacca catttcattt acatgggaga tgcggaaatt ggtaaaaacg
     2461 tcaatgttgg ttgcggaagt attgctgtta attacgacgg caaaaacaaa gcgaaaacca
     2521 tcattgggga taatgtcttt gttggctgta attcaaacct gattgcacct gtcaaagtgg
     2581 gagatcgagc tttcatagct gctggttcca cgattacaaa agatgttcct gacgacgcgc
     2641 taggcattgc tcgtgcgaaa caagacaata aacttggtta tgcgaaacat ttgaatcacg
     2701 gtaaataatt tccatttggg aattttaaaa ttttaataaa aaatagtgga ggctgattat
     2761 gtcaaacgag tattttgatc caaagttgaa gattttctcg ctaaattcta atcgtgaact
     2821 agctgaagag attgcgaaag aagttggtat tgagttaggg aaatcaagcg ttactcattt
     2881 tagtgatgga gaaatccaaa ttaacattga agaaagtatc cgtggttgtc atgtatatgt
     2941 tattcaatca acgagtaatc ctgtaaacca gaatttaatg gaacttttga tcatgattga
     3001 tgcgttgaaa cgcgcttccg cagcaacaat taatattgtt atgccttact atggttacgc
     3061 acgtcaagac cgtaaagcaa gaagtcgtga accaatcaca gcgaaattag tagcaaactt
     3121 aatcgaaact gctggtgcaa ctagaatgat tacacttgat atgcatgcac cgcaaattca
     3181 aggtttcttt gatattccaa tcgatcactt gaatgcagtt cgccttctaa gtgactattt
     3241 cagtgaacgt catttaggtg atgatctagt agtagtttcc cctgaccatg gtggagttac
     3301 tcgagctcgt aaaatggctg accgtttgaa agcgccgatt gctattattg ataagcgtcg
     3361 tccgcgtcca aacgtagctg aagtaatgaa catcgttggt aatgtagaag ggaaagtttg
     3421 tatcattatt gatgatatta ttgatacagc tggaacaatc acacttgctg ctaaagcatt
     3481 gcgtgaagca ggcgcaacaa aagtttacgc atgttgttcg cacccagttc tttcaggtcc
     3541 tgctatgaaa cgtattgaag aatcgccaat cgaaaaatta gttgttacaa actccatcgc
     3601 tcttccagaa gaaaaatgga ttgacaaaat ggaacaatta tctgttgcag ctcttcttgg
     3661 cgaagcaatc gttcgcgttc atgaaaatgc ttctgtaagt tctttattcg aataaaatat
     3721 aaaacaggat gcctcattga gacatcctgt tttttgattt aatttaattt tccccaagta
     3781 gcaggacatg ctaaataaaa ccattcatct aatttaggag catatctttt gagat
//
LOCUS       DASDXX010000213         3829 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.213, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000213 DASDXX010000000
VERSION     DASDXX010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.213"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..656)
                     /locus_tag="U0280_002581"
     CDS             complement(<1..656)
                     /locus_tag="U0280_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2272503.1"
                     /translation="MAKVAIFGGHNGTSESGASGNGLTEKAVAKEAAQIATAYAKACG
                     HSVVNGFGKPLSERIKYANSENVVAVLELHTNAGGGQGAETLYCEGVASAKEDAITVA
                     KAGSIKGLKNRGAKGDTTTRHGRLGIVRDTKAPALLHELFFIDSASDVAIWKNNKKAI
                     IESITKEWLKRRGLNSVPKTTTSKPAPAKPTTPSKPATSNNTYKNKKLVSKAANLRFY
                     "
     gene            complement(659..913)
                     /locus_tag="U0280_002582"
     CDS             complement(659..913)
                     /locus_tag="U0280_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM2272504.1"
                     /translation="MKINWIVRFKNPVWVIALVGGLFLIAQSVLYVFGIEWDYNELLN
                     RLITVITSIFALIGIIQDPTTAKIKDSERAQKYNEPGKDE"
     gene            complement(924..1139)
                     /locus_tag="U0280_002583"
     CDS             complement(924..1139)
                     /locus_tag="U0280_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2272505.1"
                     /translation="MSEQKAKKIKSTSVLHEETTNNEVQTAKTYVVKQDEKLSVIATK
                     LGLSVGELAEKNKLDSYKLKVGQELVL"
     gene            complement(1159..1605)
                     /locus_tag="U0280_002584"
     CDS             complement(1159..1605)
                     /locus_tag="U0280_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272506.1"
                     /translation="MENEKEKIDYVSRAELFEHGIDIKKEMSRKVDKVESKVDKISEE
                     VVELKVLVIPMVTSSKETAQNTQKMADTLERYTRSTTKQLHEHDLEIADVKHSIDNTL
                     KSISDEESEEKHKKFSNVQIITSVLALIGIILGGILSWDWGQFIFK"
     gene            complement(1581..2027)
                     /locus_tag="U0280_002585"
     CDS             complement(1581..2027)
                     /locus_tag="U0280_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272507.1"
                     /translation="MKTRWKKYINQMLDTNYKEVFALFFLLSVSSYNILTGFFLMTSG
                     DKIVEKSRTYQLMDNLMTIDTWGLLFILSAALILIASFQESNARFINLIFGGTIGAIV
                     LFLYSAASSESAVTNLLPSRYALSACFNLFVAVMGGLELWKTKRKK"
     gene            complement(2215..2556)
                     /locus_tag="U0280_002586"
     CDS             complement(2215..2556)
                     /locus_tag="U0280_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272508.1"
                     /translation="MEIYITTNNEGFLTGYSTSECTPGKKIDIDENDAFFQRGFASYK
                     YIANQLIFDENKEKEFQYEKTLQDAIPSAADQLLTTQEALVELYEQNTKLGQQLIDTQ
                     LAMVDMYEANL"
     gene            complement(2562..3290)
                     /locus_tag="U0280_002587"
     CDS             complement(2562..3290)
                     /locus_tag="U0280_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272509.1"
                     /translation="MSRFNANLARWEATGTKPPDSTIQNGWLAGTKPPADWFNWYFNS
                     TYTALKELQELAALNADLINHTGNTNNPHSVTKAQLGLSDVENFGIASLDEAKAGIAS
                     NKLMTPASVLAAIKEQFNTQNVLFEGEAWPSGSTYKFVNGQKVSDQNLGLIFIWSDYD
                     VLPGSASVANNYNFDFSFIPKIFVNKHAGANVNVPVATNFNASVTSITIKTLYITDTT
                     FAGHDLNSSGLNANDAILRYIIGV"
     gene            complement(3311..>3829)
                     /locus_tag="U0280_002588"
     CDS             complement(3311..>3829)
                     /locus_tag="U0280_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272510.1"
                     /translation="KTEAWRDIDNAQGKVLNNLGENVGQNRGRATDEVYRVLIRGKVA
                     RNASDGTTNKIIHAIAKSLDCNYKDIQIINANDSNSSDEHEPAAIIIKKIPLSALNAV
                     GLSTNQFLQLVNSLKSGGVRVAYINLEGSFSFAKGATEEISDDGFSELDQILGGTLGG
                     LFTPSDDFKLPI"
BASE COUNT         1039 a          824 c          597 g         1369 t
ORIGIN      
        1 ctataaaatc tcaaattagc agctttagaa actagttttt tattcttata agtgttattt
       61 gaagttgctg gtttagaagg tgttgttggt ttagcaggag cgggtttaga cgttgttgtc
      121 ttcggaacag aattcaagcc tcgtcttttt aaccattctt ttgtgatcga ctctataatt
      181 gcttttttat tgtttttcca aatagctaca tcactcgcgg aatcaatgaa aaatagctca
      241 tgtagtaacg ctggtgcttt tgtatctcgc acaatgccta aacgcccgtg acgagttgta
      301 gtatcgcctt ttgcacctcg attttttagc ccttttatcg atccagcttt ggccacagta
      361 atcgcgtcct cttttgcaga tgcaacacct tcgcaataaa gtgtttctgc accttgtccg
      421 ccgccggcat ttgtgtgtaa ttccaatact gcgacaacat tttcactgtt tgcgtattta
      481 atccgctctg ataaaggttt accaaatccg ttaactacag aatgcccgca tgctttcgcg
      541 taagctgtcg caatttgcgc ggcttctttt gctactgctt tttcagtaag tccattcccg
      601 ctcgctcctg attcgcttgt tccgttgtgt cctccaaaaa ttgccacttt tgccatttct
      661 attcatcctt tccaggttca ttatattttt gtgctctttc actatctttt atttttgctg
      721 ttgtcgggtc ttgaataatt ccgattagag caaatataga agtaattaca gtgatcagtc
      781 tattcaataa ttcgttgtaa tcccattcaa tgccaaatac gtagagtacg gattgggcaa
      841 ttaaaaaaag accgccaact agagcgatca cccacacggg attcttaaaa cgaacaatcc
      901 aatttatttt catgatattc ctcctacaat actaattctt ggccaacttt taatttataa
      961 gaatctagtt tatttttttc tgctaattca ccaactgata accctaattt tgtagcaata
     1021 actgaaagtt tttcatcttg tttcactaca taagtttttg cagtttgaac ttcgttattt
     1081 gtagtttctt catgtaacac tgatgtagat ttaatttttt ttgctttttg ctctgacatt
     1141 tccactcacc tcccttaatc atttgaaaat aaattgtccc caatcccaac ttagaattcc
     1201 accaaggata atgccaatta atgctaagac ggaagtaatt atttgaacgt tactaaactt
     1261 cttatgtttc tcttctgact cttcatcgct tatgcttttt aatgtattat cgattgagtg
     1321 tttcacatcc gcaatctcca aatcatgttc gtgcaactgc tttgttgttg atcgcgtgta
     1381 tcgttcgagt gtgtccgcca tcttctgcgt gttttgagct gtctcttttg atgacgtgac
     1441 catcggaatc accagaactt tcagttctac tacttcctca ctgattttat ctactttgct
     1501 ctcaacttta tcgacttttc ttgacatctc tttttttata tcaattccat gctcaaacaa
     1561 ctctgctctg gacacataat ctattttttc cttttcgttt tccataattc caagcccccc
     1621 attaccgcaa caaatagatt aaaacatgcg cttagagcat agcggctggg caataaattt
     1681 gtaacagcac tctctgagct cgctgctgaa tataagaaca acactatcgc acctattgtc
     1741 ccgccaaaaa tcaaatttat aaatctcgca tttgattctt gaaaagatgc aattaatatc
     1801 aaagcagcac ttaaaataaa caacaagccc cacgtgtcaa ttgtcatcag attgtccatt
     1861 agctggtatg tcctgctttt ttcaacaatt ttatcaccag atgtcattaa aaaaaatcca
     1921 gtcaaaatgt tataagatga aactgataat aagaaaaata acgcaaaaac ttctttgtaa
     1981 ttagtatcaa gcatttgatt tatatacttt ttccatctcg ttttcattac cccatcgacc
     2041 cccttcactc tgacaaatta ctctgctaat tcagcgcaat ctgcgtcaat taacaatgct
     2101 tttacttgtg cttgcagtaa gcgtggtact tctttgaatg ttttcttacc gttgagaatc
     2161 aaattcaaat aaatcacagc cattttctat tcacctcctt aaataacaaa taacctataa
     2221 attcgcttcg tacatgtcta ccatcgcgag ttgtgtgtca atcaactgct gtcctaattt
     2281 tgtgttttgc tcatataatt caactaatgc ttcctgcgta gttagtaatt gatctgctgc
     2341 gcttggtatt gcatcttgca acgtcttttc atactgaaac tctttttctt tattttcgtc
     2401 aaatataagt tgattcgcaa tatacttata actagcaaaa cctcgttgga aaaaggcatc
     2461 gttttcgtct atatcaattt ttttgcccgg cgtacattcg cttgtcgaat agccagttaa
     2521 aaaaccttcg ttatttgtag taatgtatat ttccatctcg ttcacactcc tatgatgtag
     2581 cgtaaaatag catcatttgc atttaagcca cttgagttta aatcatgtcc tgcaaaagtt
     2641 gtatcagtaa tgtaaagagt ctttattgtt atgcttgtca cggaagcgtt gaagttcgtt
     2701 gcaactggca catttacgtt cgctcctgca tgcttattaa caaaaatttt aggaatgaat
     2761 gaaaagtcaa agttataatt attagcgaca ctcgctgacc cagggagaac atcataatca
     2821 ctccagatga aaattaaacc taaattttga tcagaaactt tttgaccgtt tacaaacttg
     2881 taggtacttc ctgaaggcca tgcttcccct tcaaataaca cattttgcgt attgaactgc
     2941 tctttaattg ctgctaaaac acttgcggga gtcattagtt tgttactagc aatacctgct
     3001 ttagcttcgt ccagagatgc aattccaaaa ttttccacat cacttaaacc aagttgagct
     3061 tttgttacac tgtgtggatt atttgtattt cctgtatgat ttattaaatc tgcatttaat
     3121 gcagcaagtt cttgtagctc cttcagtgct gtatatgtgc tattaaaata ccagttaaac
     3181 caatcggctg gcggcttagt ccccgccaac catccatttt gaatggtact atccgggggc
     3241 tttgttcccg ttgcttccca acgagctaaa tttgcattaa atcgtgacat aattatcgcc
     3301 tctctttctt ttaaattggt aacttaaagt catctgatgg tgtaaataaa ccgcctaaag
     3361 ttcctcccag aatttgatca agttccgaaa aaccgtcgtc gcttatctct tccgttgctc
     3421 cttttgcaaa agaaaaagaa ccttctaaat tgatgtatgc tactctaaca ccaccagatt
     3481 tcagactgtt tactagctgt aaaaattgat tagtacttaa gccgactgca ttcagagcag
     3541 aaagaggaat ctttttaata attatcgcag caggctcatg ttcatctgat gaattagaat
     3601 cgttagcatt gattatttga atatctttat aattgcaatc taatgatttt gcgattgcat
     3661 ggatgatttt atttgtggtt ccgtcacttg cgtttcttgc aacttttcca cggattaaaa
     3721 cacgatatac ctcatcagta gctcgtcctc tgttctggcc aacattttct ccaaggttat
     3781 tcagtacctt cccttgcgca ttatcaatat ctcgccatgc ctctgtttt
//
LOCUS       DASDXX010000214         3812 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.214, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000214 DASDXX010000000
VERSION     DASDXX010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.214"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            61..396
                     /locus_tag="U0280_002589"
     CDS             61..396
                     /locus_tag="U0280_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEM2272511.1"
                     /translation="MAKTMAEIQKEVDDFIGGFEEGYFSPLAMMARITEETGELAREI
                     NHYYGEKPKKTSEPTKTVAEELGDCLFVLTCMANSLDIDMEKAHDTVMAKFKERDKDR
                     WTKKEEKAK"
     gene            393..1184
                     /locus_tag="U0280_002590"
     CDS             393..1184
                     /locus_tag="U0280_002590"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEM2272512.1"
                     /translation="MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEI
                     VEFSSLDVPVFGNLSEMLEEIKPDCVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTP
                     EQISELRSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAP
                     SGTAVKTAEMMAETREFVKQGAADEVELIEGARGAEYEGMRIHSVRLPGLVAHQEVIF
                     GAEGQGLTIRHDSYDRISFMSGVALSVRKTKELETLIYGLENILD"
     gene            1200..1604
                     /gene="mgsA"
                     /locus_tag="U0280_002591"
     CDS             1200..1604
                     /gene="mgsA"
                     /locus_tag="U0280_002591"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HEM2272513.1"
                     /translation="MHIALIAHDEKKDLMVGFATAYKHLLEPHQLYATGTTGLRIIEA
                     TGLTVHRFKSGPLGGDQQIGARISENKMDLVIFLRDPLTAQPHEPDVTALIRLCDVYE
                     IPLATNIGTAEILIRGLGAGFLDWRDLRRNDE"
     gene            1619..2800
                     /locus_tag="U0280_002592"
     CDS             1619..2800
                     /locus_tag="U0280_002592"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEM2272514.1"
                     /translation="MNDVFLKALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIA
                     TSAFPEEVKEIFQTSYDTGIAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIR
                     SLEEDLKRRDFTMNAIAMDEHFALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMR
                     AVRFLSQLDFELDKETEKALESQIELLQHTSVERITVEWLKMMKGKAAKRAIELLLKV
                     KMETYLPGLKDEKSALSEFASWDWEKRTTEESIWLGLVVAVKPNNVNAFLKAWKLPNK
                     TIQLVNKAYQYALNMKETWLTEELYHAGKAVFSLVNELNVIRGQENNQHKVSQAYEAL
                     PIHSKKDLAITGADLLKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWLGYHE
                     E"
     gene            2790..3767
                     /locus_tag="U0280_002593"
     CDS             2790..3767
                     /locus_tag="U0280_002593"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEM2272515.1"
                     /translation="MKNNREKLLALFTESDGTYLSGQEIADSLGCSRTAVWKQMEALR
                     KEGFEIEAVRNRGYRLSATAEQYTKDALLLGLETKFIGQHLEIHESVSSTQIIAHQQI
                     ESSPEGTVIVADEQTAGKGRLLRPWSSKKGEGIWMSVILKPQIPIQKVPQFTFIASLA
                     ITEAIENSTKLEPKIKWPNDIYIGKRKICGVLTEMQAEAETIHAVIIGMGINVNQQEF
                     PEEIKDKASSLKLELGESVSRKALLQEILTSLEKYYELFLDKGFAPIKLLWETKAIPF
                     GEKLTASTTKGKIHGQVKGISDEGVLLLQDALGEVHSIYSADILLDNEK"
BASE COUNT         1343 a          663 c          839 g          967 t
ORIGIN      
        1 atgaagttaa caattagtct taaaatctat tttagtttac cacataaagg gggaaaaccg
       61 atggcgaaaa caatggcaga aatacaaaaa gaagtggatg atttcattgg tggattcgag
      121 gaaggttact tttccccact agcaatgatg gcccgaatta cagaagaaac cggagaacta
      181 gccagagaaa ttaaccatta ttatggcgaa aaaccgaaga aaacaagtga acctactaaa
      241 actgtagcag aggaactggg tgattgcctt tttgttctta cttgcatggc caactcactt
      301 gatattgata tggaaaaagc acacgatacg gtcatggcaa aatttaaaga acgcgataaa
      361 gatcgttgga caaaaaagga ggaaaaagca aaatgagagt agcagtatct ggatttaaag
      421 gaagaatggg acacgaggtt gtcaaaactg ttttaagaga agcagattta gagttagtag
      481 ccgtacttga ccatgaacca aaagaaaaaa atataaatga aatagtggaa tttagctcgt
      541 tagatgtacc tgtttttggt aatttaagcg agatgttaga agaaataaaa ccggattgtg
      601 tcgttgattt tacgacccct aaagtagggt atagtaacac gaaaacgatt ttagaacacg
      661 gcgtacgtgc ggtcgttggt acaacaggtt ttacaccaga acaaattagt gaactaagat
      721 caattgcaga atcgaaaaaa atcggtgctt taattgcgcc aaactttgct gtaggcgctg
      781 ttttaatgat gcaatttgca caaaaagcag ctaagtattt cccgaacgtc gaaattattg
      841 agttgcacca tgacaataaa ttagacgcgc caagtggtac ggctgttaaa actgcggaaa
      901 tgatggcaga aacgcgtgaa ttcgttaaac aaggtgcagc agatgaagta gaacttattg
      961 aaggagctag aggcgcagaa tatgaaggta tgcgaattca tagtgtgcgt ttaccaggac
     1021 ttgtagcaca tcaagaagtg atttttggag cagagggaca aggattaaca attcgccatg
     1081 actcttatga tcgaatttcc tttatgtctg gcgtggcact ttctgtacgt aaaacaaaag
     1141 aacttgaaac acttatttat ggcttagaaa atattttaga ctaaggatag gtgaatgaga
     1201 tgcatatcgc attaatcgcg cacgatgaaa agaaagattt gatggttgga tttgcaactg
     1261 catataaaca tttgctcgaa ccgcatcaat tatatgcaac cgggacgaca ggtttacgca
     1321 ttatcgaagc aactggctta acggtacatc gttttaaatc aggcccgctt ggtggcgatc
     1381 aacaaattgg tgcgcggatt tcagaaaata aaatggactt agttattttc ttgcgggatc
     1441 cactcactgc gcagcctcac gaaccagatg tgacggcgct tattcgatta tgcgatgtat
     1501 acgaaattcc tttagcgaca aatattggca cagcagaaat tttaattcgt ggtttaggag
     1561 ctggtttcct agattggcga gacttaagac ggaatgatga ataaaggagc gatgacagat
     1621 gaatgacgtt ttcctaaaag cgcttcctgt attgcaaaaa ttaactacag cgggttttga
     1681 agcgtatttt gttggcggat ctgtcagaga ttacttgcta aatagaacga tttccgatgt
     1741 ggatattgca actagtgctt tcccagaaga agtaaaagag atttttcaga caagttatga
     1801 cactgggatt gcacatggga ctgttacagt tagagaaaat aatgaatttt atgaagtgac
     1861 cacttttcga acggaaggga cgtatgaaga tttcaggcgc ccaagcgagg taacctttat
     1921 tcgctcccta gaagaggatt taaaacgtcg cgattttacg atgaacgcca ttgcgatgga
     1981 tgaacatttt gcgctacaag acccgttttc tgggcaacta gcgattcaaa ataaagaaat
     2041 caaagcagtt ggtaaagcct ccgaacgttt tcatgaagat gcgcttagaa tgatgcgagc
     2101 agtccgcttt ctgagtcaac ttgactttga gcttgataaa gaaaccgaaa aagctttaga
     2161 aagccaaata gagttgttac agcatacttc cgttgaacga attacggttg aatggctaaa
     2221 aatgatgaaa ggcaaagcag caaaacgtgc gatagaacta cttttaaaag tcaaaatgga
     2281 aacttattta ccaggcttaa aagacgagaa atcagcacta agcgagtttg ctagttggga
     2341 ctgggaaaaa cgaacaaccg aagaatcgat ttggcttgga ctcgtcgttg ctgtcaaacc
     2401 taacaatgtt aacgcatttc ttaaagcttg gaaattaccc aataaaacaa ttcaacttgt
     2461 gaataaagca tatcaatacg cgctaaacat gaaagagaca tggctaacag aagaacttta
     2521 tcatgctggc aaggcagttt tctcattagt aaatgaacta aatgttattc gagggcaaga
     2581 aaacaaccaa cataaagtaa gtcaagcata cgaggcgtta ccaattcact ccaaaaaaga
     2641 cttagctatt actggagctg atttattaaa atggtctgga gaaagcgcag gtccatgggt
     2701 aaaagagacg cttgataaag tggaatgtgg tgtcctttcc aatgaaataa acaatgaaaa
     2761 aattcagatt aaaaggtggc taggctatca tgaagaataa tcgagaaaaa ttacttgctt
     2821 tatttacaga aagtgatggt acttatttat cagggcaaga aattgcggat agtctaggat
     2881 gctcgcgcac agccgtttgg aagcaaatgg aagctctccg taaagaagga tttgaaatcg
     2941 aagcagtcag aaaccgtggt taccgtttgt cagcaacagc agaacagtac acgaaagatg
     3001 cactactact cggtttagaa accaaattta tcggtcagca tttggaaatc catgaatcgg
     3061 ttagctctac acaaatcatc gcccatcagc aaatcgaatc tagccctgaa ggaaccgtta
     3121 tcgtagccga tgagcaaaca gctggaaaag gtcgcttgct tcgcccttgg agttccaaaa
     3181 aaggggaagg tatttggatg agtgtaattt taaaaccaca aatccctatt caaaaagtac
     3241 cccagttcac gtttatcgcc tcactcgcaa tcacagaagc gattgaaaat agcacaaagc
     3301 tcgaaccgaa aatcaaatgg ccgaatgata tttacattgg taaacgaaaa atctgtggcg
     3361 ttttaacgga aatgcaagcg gaggcagaaa cgattcatgc agtaattatc ggcatgggaa
     3421 tcaatgtaaa tcaacaggaa ttcccagaag aaatcaaaga caaagcgagt tctctgaaac
     3481 tggaattagg cgaaagcgtc tcaagaaaag ctttactaca agaaattctc acttctttag
     3541 aaaaatatta tgagcttttt ctagataaag gattcgcacc gataaaatta ctttgggaaa
     3601 ccaaagcaat cccatttggc gaaaaattaa ctgctagcac aacaaaaggc aaaattcatg
     3661 gacaagtaaa agggatttct gatgaaggtg tactcttact ccaagacgca ctcggtgaag
     3721 tacattcaat ctattccgca gatattttgc tagataatga aaaataacga aacactatag
     3781 aaaagaacgt tttaacccta ataaaatacc ca
//
LOCUS       DASDXX010000215         3805 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.215, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000215 DASDXX010000000
VERSION     DASDXX010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3805
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.215"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..436
                     /locus_tag="U0280_002594"
     CDS             <1..436
                     /locus_tag="U0280_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272516.1"
                     /translation="ILLMTQLVAFPFTLLYGYLAKRFSAKPLIFTAIFVYIIICIYAV
                     FMKSALDFWILAMLVGTSQGGIQALSRSFFGKIIPKKRSNEFYGFYNIFGKFSAIMGP
                     ALMGVITQITGKTQYGVASLIVLFLVGGILFVFVKEKNLENL"
     gene            506..1105
                     /locus_tag="U0280_002595"
     CDS             506..1105
                     /locus_tag="U0280_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM2272517.1"
                     /translation="MKRYFIILILPILSIFAAVTMYFSWFQGWLYFYLKHVMATVSHM
                     GYITVGITAILLYFVTVQLVNWKTNKALLVFCYIIYFSILLCLLFGKASDTQGFSSDT
                     FGFVDTFLSGNLRVIIIGNVLAFIPIGFLLKKLGFFTALLSAGMLIFAVEGAQYMLHV
                     GFFDTGDVFLNVCGIMLGYIVIRFLSPRKYKELKVKPTS"
     gene            complement(1128..2294)
                     /locus_tag="U0280_002596"
     CDS             complement(1128..2294)
                     /locus_tag="U0280_002596"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEM2272518.1"
                     /translation="MKIGIDKIGFYTPAFYVDMVELAEARNIDPNKFTIGIGQDKMAF
                     APITQDSVTMGANAALQILDEEDLKKIDLVILATESGIDESKAGAVYIHRLLGIQPFS
                     RAIEIKEACYGATAGINLAKDYVAKHPDSKVLVIGSDIARYGLATGGEATQGAGAVAM
                     VIAADPRCITLEDDNVFYTEDIMDFWRPVYSEYACVEGKYSTEQYIHFFQTIWEKYSA
                     KFGKNLEDFAAICFHLPYTKMGKKALDTIIETAPTEVQERLLENYRLSTLYSRNVGNI
                     YTGSLYLSFISLLDNQADLQAEDKIGFFSYGSGAVGEFFHGVLQPDYKKYIRKDEHAE
                     LLANRTKLAIPDYETKFKQQLPKDGSTFEVDPASDPATIVLTGIQEHKRQYIKK"
     gene            2444..3613
                     /locus_tag="U0280_002597"
     CDS             2444..3613
                     /locus_tag="U0280_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HEM2272519.1"
                     /translation="MKEVVIIDAVRTPIGKFGGSLKDISAVDLGATALKGVLERANIA
                     PERVDQVIFGNVLQAGLGQNVARQIAIKAGIPYKVPGVTINEVCGSGLKSVMLGRQAI
                     QLGEADIVAVGGTENMSQAPLLLNPELAGEEIDPKKLRNSMLIDGLTDVYGEYHMGIT
                     AENVAEKFSVTREEQDEFAHNSQMKAANAQEKNLFEEEIIPVKLPDGSFFEADETIRA
                     NSTLEKLATLKSVFKEGGTVTAGNASGINDGASAIILMSKEKAVAENIPYIATIKVTS
                     EVGVDPALMGYAPYYAVNEALTKGGYSIDDIDLFHLNEAFASQSVAVARDLKIPEEKL
                     NIYGGAIALGHPIGASGARIIASLLNELKHENKHIGVASLCVGGGIGIAIILEKA"
BASE COUNT         1162 a          673 c          727 g         1243 t
ORIGIN      
        1 aattctttta atgacacaac tcgttgcatt tccgttcact ttattatacg gatacttagc
       61 caaacgtttc agtgcaaaac cgcttatctt taccgcgatt tttgtttata ttattatttg
      121 tatttatgcg gttttcatga aatctgcact tgatttttgg atattagcga tgttagttgg
      181 aacttcgcaa ggtggtattc aagcattaag tagatcattc ttcggaaaaa ttattcctaa
      241 aaagcgttcg aatgagtttt acggatttta taatattttc gggaaatttt cagcaatcat
      301 ggggcccgca cttatgggtg taatcacaca aattactgga aaaacgcaat acggtgtggc
      361 tagtttaatt gtacttttcc tcgttggcgg tattttattt gtgttcgtaa aagagaaaaa
      421 cttagaaaat ctttaaaccc ttttaagaaa gtccttattt tcacatgtta tccttgaggt
      481 agcctttgaa aaggaggacg ccaggatgaa aagatacttt ataattctta ttttaccaat
      541 cctttctata tttgctgcag tgacgatgta tttttcctgg tttcagggat ggctttattt
      601 ttacttaaag cacgtaatgg ccacagttag tcatatgggc tacattacgg ttggcatcac
      661 ggcgatatta ctctattttg tcacagtaca attagtaaac tggaaaacaa ataaagcatt
      721 acttgttttt tgctacatta tttatttcag tattctactc tgtttgttat tcggaaaggc
      781 ttccgacacg caaggatttt caagtgatac ttttgggttt gttgatacat ttttatcagg
      841 taatttacgc gtcattatca taggaaatgt attagccttt ataccaattg gttttttact
      901 caaaaaatta ggttttttca ccgcattact atcagctgga atgttgatat tcgctgtaga
      961 aggggcgcag tacatgctac atgtaggatt ctttgacacc ggagatgtat tcctgaatgt
     1021 ttgtggtatc atgcttggct acattgtgat tcgtttttta tccccaagaa aatataaaga
     1081 gctcaaagta aaaccgacta gctgatttag cctagtcggt tttttgatta ttttttaata
     1141 tattgacgtt tatgctcttg aataccagtt aatacaatgg ttgctgggtc actagcagga
     1201 tccacttcaa acgtcgaacc atctttaggt aattgttgtt tgaatttcgt ttcataatct
     1261 ggaatagcaa gtttcgtacg gtttgctaac aattccgcat gttcatcttt acggatatat
     1321 tttttatagt caggttgtag cactccatgg aagaactcgc caacagcacc agacccgtaa
     1381 ctaaagaagc caattttatc ctctgcttgt aaatctgctt gattgtctaa caaggaaata
     1441 aagcttaaat agagggaacc agtgtaaata ttaccgacat tgcggctata aagcgtactt
     1501 agacgataat tttctagcaa tctttcttga acctcagttg gagctgtttc aataatagta
     1561 tctaacgctt ttttacccat ttttgtatat ggtaagtgga aacaaatagc tgcaaaatct
     1621 tctaagttct tgccaaattt tgctgaatac ttttcccaaa tggtttggaa aaagtgaatg
     1681 tactgctccg tcgaatattt accttctaca catgcatact cagagtaaac agggcgccag
     1741 aagtccataa tatcttctgt ataaaacaca ttatcgtctt caagtgtgat acaacgtgga
     1801 tcagcagcaa taaccatcgc aacagctcca gctccttgag ttgcttcgcc gccagttgcc
     1861 aagccgtaac gagcaatatc cgatccgata accagtactt tactatcagg atgtttcgca
     1921 acataatctt tcgctaaatt aattcctgca gtggctccgt agcaagcttc ttttatttca
     1981 attgcacgag agaacggctg aatacctagc aaacggtgaa tataaaccgc gccagccttt
     2041 gactcatcaa ttcctgattc tgtcgccaaa ataactaaat caattttttt caaatcttct
     2101 tcatctaaaa tctgtaaagc tgcatttgcg cccattgtta ctgaatcttg cgtaatcgga
     2161 gcaaaagcca ttttatcttg gccaatacca atagtaaact tgttaggatc aatatttcta
     2221 gcttcagcaa gttctaccat atcaacataa aatgcaggag tataaaaacc tattttatca
     2281 attccaattt tcatatgtaa gctcaagtcc tttatatttt atttgtaagt actttaattt
     2341 tagtagaaaa atgcacaaaa tacaatacat tgggcttaat ctagtgagtt tttagctagt
     2401 ttcatgatat aatacggata gattacattt aaaggagatt gctatgaaag aagtagttat
     2461 aatagatgca gttagaacac caattggaaa atttggtggt agtttgaaag acatcagtgc
     2521 agtagacctt ggcgctaccg ctctaaaagg tgttttagaa agagccaata ttgctccaga
     2581 acgggtggat caagtgattt ttggtaatgt attacaagct ggacttggcc aaaatgtagc
     2641 tagacaaatc gctattaaag caggaattcc ttataaagta cctggagtca caatcaatga
     2701 agtttgtgga tctggcttaa aatcggttat gcttggtagg caagcaattc agctagggga
     2761 ggctgacatc gtagccgttg gtgggaccga aaatatgtcc caagcaccac ttttacttaa
     2821 tcccgagcta gctggcgaag aaatcgatcc aaaaaaacta agaaatagca tgttaattga
     2881 tggtttaaca gatgtttacg gcgagtatca catgggaatt actgcagaaa atgttgcaga
     2941 gaaattctcc gtaaccagag aagaacaaga tgaatttgcc cataactcac aaatgaaggc
     3001 cgcgaatgca caagaaaaaa acctttttga agaggaaatt attcctgtaa agcttccaga
     3061 cggttcattt tttgaagccg atgaaacgat tcgcgcgaat tcaactctag aaaaattagc
     3121 tactttgaaa agcgtattca aagaaggtgg aacggttaca gccggcaatg cttccggtat
     3181 caatgatgga gcttccgcaa ttattttaat gtcgaaagaa aaggcagtcg cggaaaacat
     3241 tccttatatc gcaacaatca aagtaacctc tgaagttggt gtcgatccag cacttatggg
     3301 ttacgcgcca tactatgcag taaatgaagc tttaactaaa ggtggatatt ctatcgatga
     3361 cattgattta ttccatttaa acgaagcttt tgcatcgcag tcagttgcag tggctcgtga
     3421 tttaaaaatt ccagaagaga aacttaatat ttacggtgga gcaattgcac taggccatcc
     3481 aattggagct tctggtgcac gcattattgc ctcattgtta aatgagttaa aacatgaaaa
     3541 taagcacatc ggtgtcgctt ccttgtgtgt tggtggtggt attggtattg caattatcct
     3601 tgaaaaagct tgatagtagt acatttaatg ttagtaaaaa gctaaaatca gctaatagtt
     3661 gattttagct ttttatgatt tcgtttttgt cttttttgtg aacaaaccgc caatttgttt
     3721 tgtgaaactt cttacaaaaa caagtatttg tacggttttg gtgctagaat gtaattattc
     3781 taacaagcag gaggacatta tgaag
//
LOCUS       DASDXX010000216         3709 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.217, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000216 DASDXX010000000
VERSION     DASDXX010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.217"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..559
                     /locus_tag="U0280_002598"
     CDS             <1..559
                     /locus_tag="U0280_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272520.1"
                     /translation="FEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGID
                     AFSSYPKKKHSITVMSEHLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALL
                     GMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLL
                     TELVEEEFLVNKKSPYRIDKDSLDI"
     gene            complement(573..881)
                     /locus_tag="U0280_002599"
                     /pseudo
     CDS             complement(573..881)
                     /locus_tag="U0280_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464266.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
     gene            complement(946..1455)
                     /locus_tag="U0280_002600"
     CDS             complement(946..1455)
                     /locus_tag="U0280_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272521.1"
                     /translation="MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSD
                     MLISISEVLETPVSTLLGETVMVSKVDDVKAISEKLEIINLQLAQRKTARRKMLYWLF
                     VSLCAVIAIISSVFIILNSPYLGWDYSDPETSVIGVAFHTFEWLFVRLAPIILIGGVV
                     GIFLTRKNV"
     gene            complement(1732..3636)
                     /locus_tag="U0280_002601"
     CDS             complement(1732..3636)
                     /locus_tag="U0280_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2272522.1"
                     /translation="MKKAFLCLSAVVLSLNFVWVNPLSGLASKIETTKLKSTMDTNQQ
                     VNLKNNATDIVTSEDLGGQTWLINEVNRQLAPKKVGVDLTFDDLAKIKIISLSNKSLT
                     GEVPPEIKNLVSLEKLLLYSNKLSGEIPAELGELTNLSELRLDYNQFTGKIPDGLGKI
                     SSIALQNNELVGQIPLSLYENRTGTNEVNVSGNQVTINSREPEPSIYSYSTFIYPATT
                     PQYSGHLTATTTYFSNVTNDTLLTPFLSGSSTFIDLHAEFMLDRELFEGHEVTITDES
                     SGKILYEGELNSDISISLKSFSSGYHNIRVVLDNAPNNPQNQVTFGISMASTVAGDLT
                     VNYVDEDGKTIHDPQIVSGFVGDDYDVTTPDYELVIDGYELDTSKLPTNGMGTFDYAP
                     LSVTYVYKKMEGAPVTVKYVDENGNEITTSDTLTGKLDDSYHAKAKEITGFTLDNSKL
                     PVNASGVFETNPQTVTYVYNAVPAKIKAHDSTIYVGDTWSAEDNFDSAVNSVGAAVSF
                     DDVKVEGKVDTTKAGVYPVTYSFSGEAVTINVTVKAKVIPAPPVTPVQPINPDQPNIP
                     NTPSVDQTHVAKPGNLKVTKTQPTVAGKIKLPTTGDNLWDSVLYSVFGLIAVCVAFSL
                     FFWRKKQKHS"
BASE COUNT         1111 a          727 c          609 g         1262 t
ORIGIN      
        1 ttttgaagat gaaaaagcga aaagtatctt ttttatcgtg gaaggttatg ctgcagttga
       61 attagaggat aatttaagaa aaacgaacta catttccatc tttgttcttc catataatgt
      121 tttaggaatt gatgcatttt cctcttatcc gaaaaaaaag catagtatta cggtcatgag
      181 tgaacatttg atgctctata aaatagatgc tgacttttta ctcaacatat tatcgattaa
      241 acctgatgta aatgattttc tcttaacaag tattgctgac gtttttgctc gtcactatgc
      301 gcttcttggt atgattgcaa aaacgccgaa agaacggatt tacatggctt tagaaaatct
      361 tgcggtagag atgggcactg aagatgaaga aagaaatgaa attgtattac caaactttat
      421 caatcagtca gttcttgcaa gatattgccg cacaacgcag ccaaacatat ccaatttact
      481 aaccgaactt gtagaagaag aatttttggt caacaaaaaa agcccttacc ggattgataa
      541 ggactctttg gatatatgag attgatatta atttaataac ttaaatcatt tccattagtt
      601 tcaattactt ttttatacca atagaaactt ttcttcttca aacgtttata gctattatct
      661 ttatcaacat caacaaagcc atatcttttc tcgaaacctt cacgtgttga ataaagagct
      721 attattcact aaattagata aacgtttatg tcacaacctt cttcaatggc ttcttgcata
      781 cgcgcaatat gtgaggccaa ataatcaatt cggtacgtag aatcaattgt ctagccccgt
      841 tcggttgttt gacaatatgg gtttggtgct ttgattccgt tcctttttac aaacagtaat
      901 tttgaagtct gactcatccc taaaagcatc caagatagta cgcttttata cgttcttccg
      961 cgttaaaaaa atcccaacga ctcctcctat aaggataatc ggtgctaacc ggacaaacaa
     1021 ccattcaaat gtatgaaaag ctactccgat aacgctagtt tcagggtcac tataatccca
     1081 acctaagtaa ggactattta gtattataaa gaccgaagaa attattgcta taacggcaca
     1141 caacgagaca aatagccaat aaagcatttt tcgtctggcg gtctttcttt gtgcaagctg
     1201 taagtttata atctccagtt tttcggagat cgcttttacg tcatcaacct ttgaaaccat
     1261 aacagtttct ccaagcaaag tgcttactgg tgtttcaagc acttccgata tggagattaa
     1321 catatcagaa tcaggaactg acaatccttg ctcccattta gagattgttt gtcgcaccac
     1381 attcagtttg atggcaattt cttcttgcga aagtcctttt gatttcctga ttgctttaat
     1441 attttcgttt aacattagag atacccacct ttcttccagt tgttatcact attgtatgag
     1501 aactcgtcca ttgctacaag caacgcatat taacattcaa actttatagc cacgatatgc
     1561 agttttgtat ttactatcac atccatagta cctttcaatc ataaaaatat tattttgctt
     1621 tctttaattc agaataggac gtaaagttat tttttgctgg tataccgttt ttagttggta
     1681 tctctttagc acattaccct tttaaaatag gcagcctagt tctaatatat ttcagctatg
     1741 cttttgcttt ttacgccaga agaataaact aaatgcgaca catactgcta ttaaaccaaa
     1801 tacactatac agcacactat cccaaagatt atcccctgta gttggtagtt ttatttttcc
     1861 tgctactgta ggttgtgtct ttgttacctt taaatttcca ggttttgcaa cgtgagtctg
     1921 atctacgcta ggtgtatttg gaatgtttgg ttggtctgga ttaattggtt gaacaggtgt
     1981 tactggtggt gctggaataa ctttagcttt tacagttaca ttaatagtca cagcttcccc
     2041 ggaaaaacta taagtaaccg gataaacacc tgcttttgtc gtgtctactt tcccttctac
     2101 ttttacatca tcaaaggaaa ctgcagctcc aacagaattt actgcgctat caaaattatc
     2161 ctctgcgctc catgtatctc ctacgtaaat cgtggaatca tgcgctttaa tttttgcagg
     2221 tactgcatta tacacgtagg tgactgtttg tggatttgtt tcaaaaacgc cgcttgcatt
     2281 gactggtagc ttactattat ctaatgtaaa tccagtaatt tctttcgctt ttgcgtgata
     2341 agaatcatct agttttccgg tcaaagtgtc agaagtagtg atttcgttgc cgttttcatc
     2401 tacgtatttt actgtgacag gtgcgccttc cattttttta tagacatacg tgacagatag
     2461 tggcgcgtag tcaaaagtgc ccatcccatt ggttggtaat ttggaagtat ctaattcgta
     2521 cccatcaatt actaattcgt agtcaggcgt tgttacatca taatcatcac ctacaaatcc
     2581 actaactatc tgtggatcat gaatcgtttt tccatcttca tctacatagt taactgtcaa
     2641 atcaccagcc accgtacttg ccatgctgat accaaaagtt acttggtttt gtgggttgtt
     2701 cggcgcatta tcaagtacaa ctcgaatatt atgatagcct gagctgaaac ttttcaaaga
     2761 aatactaatg tcagaattta actcaccttc gtaaagtatt ttaccagaag actcatctgt
     2821 aattgttacc tcatgacctt caaaaagttc cctatctaac ataaactccg catgcaaatc
     2881 aataaaagta gaactgccag aaagaaaagg agtaagcaat gtatcattcg ttacgttgct
     2941 aaaataagtg gttgttgccg tcaaatgccc actatattga ggtgtagtcg ctggataaat
     3001 aaaagttgag taggagtaaa tacttggttc cggctctcta ctattaatgg tcacttggtt
     3061 acctgataca tttacttcat ttgttcctgt tcgattttcg tataagctca aaggaatttg
     3121 gccaaccagt tcgttgttct gtaacgcaat tgacgaaatc tttccaagtc catcaggaat
     3181 ttttccagtg aattgattgt agtctaatcg aagttctgat aaattcgtta attcccctaa
     3241 ttcagcagga atctctcctg atagcttatt agaatataaa agcaattttt caagagatac
     3301 taaattttta atctccggtg gtacttcacc agtaagcgat ttattactca atgaaatgat
     3361 cttaatttta gccaaatcgt caaatgttaa atccacaccg acctttttag gcgctaattg
     3421 tctgtttact tcattaatca accacgtctg ccctcctaaa tcttccgaag taacaatatc
     3481 ggttgcatta tttttcaaat taacttgttg gtttgtatcc attgttgatt tcaattttgt
     3541 tgtttcgatt ttggatgcca acccagaaag tgggttaacc cacacaaaat ttaatgacaa
     3601 aacaacagcg gataggcata gaaacgcttt tttcattcgt gtataacctc cagtaatatt
     3661 tattactcct aaaattatac gctaaacagc cactcaaaaa cgccttcct
//
LOCUS       DASDXX010000217         3660 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.218, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000217 DASDXX010000000
VERSION     DASDXX010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3660
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.218"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            191..2530
                     /locus_tag="U0280_002602"
     CDS             191..2530
                     /locus_tag="U0280_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEM2272523.1"
                     /translation="MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKE
                     AGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLH
                     WAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQRVMSREELSVFVDDLLSQYA
                     IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGK
                     TMSTLFPGIKAMGEGKTDKLFYFTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKI
                     CFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEGYARKYTLCPFELSL
                     DVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKK
                     STVMQVKRGLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVL
                     KFTFVAKEWLPQNTQSELQVDVLDLYFESLRYTAIAEFYDERYVTQVTRNHRDLEIKQ
                     LCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFKQKNMHL
                     LVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPN
                     IRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVG
                     VGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVLQAVGRVIRGESDRGVVLLIE
                     ERFSADRYRALFPTHWNHAKTVKSTDDISREVAGFWRNS"
     gene            2575..3387
                     /gene="yidA"
                     /locus_tag="U0280_002603"
     CDS             2575..3387
                     /gene="yidA"
                     /locus_tag="U0280_002603"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM2272524.1"
                     /translation="MYKIIAIDIDGTLLNDAHEITLAVRDSIKAAKAKGVKVVLCTGR
                     PLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAE
                     NVNVTYFDGKNMYVPSRKITEITCQDSLLLGTPLYHLPVEEAPESIHVSKVMLLDSPE
                     KITDVIKKLPESIKEKFYVVRSVPYNLEFLQKGVNKGSALASLAEKLGVSQSEVMSIG
                     DQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR"
BASE COUNT         1229 a          566 c          807 g         1058 t
ORIGIN      
        1 aaatgtttct aaaatgtgaa atatttaaat cattaaaagt ctttttttag tgaaaagtgc
       61 tgtatagtcg ctcttgtgcg cgagtttaga atgtcttatc ataaaagtcc aaaattagta
      121 ttttttattg aattgttacg aacgtaggtt ctgtgttata attcaactgg attgtaaagg
      181 aggactattg atgaggagag tgcgtatttc agttaggcgt ttagtagagt ttgtgcggag
      241 aagcggtagt attgataacc ggatgacaaa ttcagaccgc gccttagaag gaacaaaaat
      301 tcatcaatta ctccaaaaag aagctgggga agaatatgcc gcagaagtac ggctaaacct
      361 agaacgaata gtggacggaa ttgctttttc gcttgatgga cgcgcagatg gcatcataaa
      421 tagtcggatg attgatgaaa ttaaaacaac agagacgcca atggatgaaa ttaccgaaga
      481 ttttcgacct cttcactggg cgcaacttat ttgttatgga tttatgcttg cagaaaagtc
      541 cgatttggca gaagttactc tgcaattaac gtattatcaa gtagttgaca aagaagtaaa
      601 acaatttcaa cgtgtaatga gtcgcgagga actgagtgtt tttgtggacg atttactttc
      661 ccaatatgct atttgggcaa aggcatctgc cgcttgggaa atgaaacgaa ataaaacaat
      721 tcaagaatta acgtttccat acgacaacta tcgaagtggg caaagagagc tcgccattgc
      781 ggtgtaccga acaatatctt cagaagaaag tttgttttgt gaagcaccca caggtatcgg
      841 caaaacaatg tcgaccttgt ttcccggtat taaagctatg ggtgaaggga aaacggataa
      901 attattttac tttactgcaa aaacaatcac gcgacaagtt gccgaagatg cactagatga
      961 gatgcgtcgt aaaggactgg ctgcaaggag tgttacaata actgcgaagg ataagatatg
     1021 ttttttagac gagcggaaat gtgaaccaga tcattgccaa tttgcgcgtg gttattatga
     1081 tcgtttgaac gaagcgttgt ttgatatgtt gcaatccgaa gaagcgatta cccgtcaagt
     1141 tgttgagggt tatgcccgga aatacacact ttgtccattt gaattatcgc tggatgtggc
     1201 tcttttttgt gatgtaatag tttgtgatta taattattta ttcgacccag tagtttactt
     1261 aaaacgcttt tttgcagaag gaccgggaaa atatactttt cttgtagatg aagtgcataa
     1321 tttagtagac cgtgcgcgct cgatgtattc ggcgacatta aaaaaatcaa cagttatgca
     1381 agtcaaacgg ggactagatt caaaaaagaa caaacgattg ctaaatgcaa taaatgtgat
     1441 gaataaagaa atgattgtgc ttaacaaaaa actaaaggac ttagaaaaaa cgacttatgt
     1501 ccaaaaaagt gaactcgttg attggaatgc agctgtgtta aaattcacct ttgtagcgaa
     1561 ggaatggttg ccgcaaaata ctcagtcaga attacaagtg gatgtgttgg acctttattt
     1621 tgaaagttta agatatactg ccattgcgga gttttatgat gagcgttacg tcacacaagt
     1681 tacgagaaat cacagggatt tagaaataaa acaactatgt ttggatccgg cgttcttatt
     1741 atcagagagg ctaaaactcg gaagcagttc ggtgcttttt tcagcaacgc ttcgaccaat
     1801 agattactat acaaatgtac ttggtggtca agaagacact agtagaatga tcttttcttc
     1861 gccatttaaa caaaaaaaca tgcatttact agtagcggat tatattagta cgaaatacca
     1921 aatgcgtgaa aatagtatgg aagctgtcgt agatgctctc tatgctctcg tctctgggaa
     1981 aaacggcaac tatatatttt tctttccatc atttctatat ttacaaaagg tatatgattt
     2041 atttaaagaa aaatatccta acatcaggtt gcaaaaacaa gagactgcta tggatgaaaa
     2101 gcagcgagag cattttttag aagattttca tgcagagaat gtagaaacct tgattggctt
     2161 ttgcgtttta ggaggcgttt tttcagaagg ggtagatctt cgcgggaacc gattagtcgg
     2221 tgcggctgtc gttggtgtag gacttgcgca attgaatcac gaatctgatt taattaaaga
     2281 ttattataat gaaacgattg gtcggggatt tgattatgca tatcagatac caggaatgaa
     2341 taaggtgctt caagcagttg gccgggttat tcgaggagaa tcagatcgtg gcgtagtgtt
     2401 gttaatagaa gaacgatttt ctgccgatcg ttaccgagcg ttgttcccta cgcactggaa
     2461 tcatgcgaaa acagtgaaga gcacagacga tatctcccga gaagtggccg gattttggcg
     2521 gaatagctaa ttttctagta gaatagaagt aattagtcat tttgggagga aattatgtat
     2581 aaaattatcg cgatagatat tgatggcact ttattaaacg acgcacacga aatcacacta
     2641 gccgtgcgtg actctattaa agctgcgaaa gcaaaagggg taaaagtagt attatgtaca
     2701 ggccgtccac ttgcaggaat taaaaaaagc ttaattgaac tagatctttt agatgaaggg
     2761 gattacgcaa ttacgtttaa tggggcggtc gtgttagaaa cagcttcaga aaaaacatta
     2821 gcagatataa ccttaaataa aactgaacta gaagaaattt atgcattttg tcatgcggaa
     2881 aatgttaacg tcacttattt tgatgggaaa aacatgtatg taccaagccg aaaaatcaca
     2941 gaaatcactt gtcaagattc cctgctactt ggtacgccac tatatcattt acctgtagaa
     3001 gaagcgcctg aatctattca tgtttccaag gttatgctat tagactcacc tgaaaaaatt
     3061 accgatgtta taaaaaaatt accagagagt atcaaagaaa aattttacgt tgtccggagt
     3121 gttccttata acctagagtt cttgcaaaaa ggcgtaaata aaggatcagc gctcgctagt
     3181 ttagcagaaa aacttggggt gtctcaaagt gaagtcatga gtattggtga ccaagaaaat
     3241 gatattacca tgattgagta tgctggtatg ggagttgcaa tgggtaatgc gacagagcat
     3301 attaaagaaa tcgctaacta tacaacaact actaataatg aagatggtgt ggcacaggct
     3361 atacaaatgc tcattctgga ccgctaaaaa tagtgaatag tagtaaaaac agaatattgt
     3421 caaacagtgt aaatggagat ttaaaaagca tgcgagtcac tataaaaagc cgaaactttc
     3481 tataaaggag tttcggcttt tttgtttaat taagtacttt atgataaata gccctaaaaa
     3541 aagtcactaa aagttcataa agtgggtgtt ttaggagcag tacttccgaa aagtgatata
     3601 gcttggagtt actcaattgt catatgatat gtgataataa caaaacttca ttagtaaagg
//
LOCUS       DASDXX010000218         3623 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.219, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000218 DASDXX010000000
VERSION     DASDXX010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.219"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            212..913
                     /locus_tag="U0280_002604"
     CDS             212..913
                     /locus_tag="U0280_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEM2272525.1"
                     /translation="MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIEQAD
                     VVKLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFNGEYYPLVSFHAHIPAEH
                     LLDGYVYPIEWHFVHEKPDGTTLVMSAWMEIDNTNNVEFKDLPTYFPEVFADFETERE
                     ITLDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIGNTS
                     RPVQDLNGREITFYN"
     gene            981..1523
                     /locus_tag="U0280_002605"
     CDS             981..1523
                     /locus_tag="U0280_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012985137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM2272526.1"
                     /translation="MYEKARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREE
                     VVVAGLLHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTG
                     SLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNMEYGLNP
                     SEIPPFFGEYARLVKWIFKK"
     gene            1659..2531
                     /locus_tag="U0280_002606"
     CDS             1659..2531
                     /locus_tag="U0280_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2272527.1"
                     /translation="MVYGAIEAGGTKFVVAIGEKSGKIIKRESYPTTEPAETMKAVIQ
                     FFKQYEDELKAIGIGSFGPIDIRKSSATYGYITQTPKLAWRNYDIVGAMKKEFNVPIG
                     FTTDVNAAALGEVSLGAAAGLDSCIYLTIGTGIGGGAVVSGKILEGFSHPEMGHIMVR
                     RHKRDRFTGSCPSHSDCLEGLAAGGAIEKRWGQKAAELADNEEVWNLEAHYIAQALMN
                     YTLILSPERIVLGGGVMKQRQLFPLVRQKLKALVNNYVQLPDLDEYIVPPKLEDDAGI
                     TGCVLLAVDAEESN"
     gene            2616..3545
                     /locus_tag="U0280_002607"
     CDS             2616..3545
                     /locus_tag="U0280_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015454391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEM2272528.1"
                     /translation="MSITNLLNIKYPIIQGAMAQIAKAPLVAAVSNAGGLGIIASGGM
                     TADMLREEIKKTKALTDKPFGVNLMLMMTNIAELTEVIIEEKVGIVTTGAGTPKTFMP
                     IWKEAGIIVISVVPSVMIAKRMEKMGADAVIAEGTEAGGHVGETTTMALLPQIVDAVT
                     IPVIGAGGIADGRGIVAALALGAKGVQIGTRFLATDECPVHPDFKAAVIKASDRDTMV
                     TGRKAGAPVRSIKNKMIKEYIRLEEENADRDTLEELTLGSLRKAVQEGDTDNGSVMAG
                     QIAGLITEIKPCKDVIEEMMTDAKNVIAGLELN"
BASE COUNT         1205 a          625 c          822 g          971 t
ORIGIN      
        1 ttggaaaatt tgaattttat tattgagaat tataagaatg aaaagtaaag acgtttttat
       61 ataaaagatg taccggaaat aaagccacca gtatcttcac gtgagttcac accaaagtca
      121 aaacacgaac attaagcata taacttgtgg aatagatcag ctatccgcta aaataatgtt
      181 acgcaatttt tttcgaaaag gagaaatggt tatgactaag gagaaagtgt tatggggtta
      241 cgatgaaaag actgggccag aaatgtgggg gcatatctgc tctgactttg aaatcgcaca
      301 tactggaaag gcacaatcgc cagtagatat tgaacaagct gacgttgtga aattaaaacc
      361 atcaacaatg aaattttact ataaagaaac agactatacg attagaagaa ttgaacaatc
      421 ggtgcatgtt tttccgcatg acaaagaaca agggttacgc tttaacggcg agtattatcc
      481 gcttgtatcg ttccatgcac atattccggc ggagcatttg cttgacggtt atgtatatcc
      541 gattgaatgg cattttgttc atgaaaaacc agacggcaca acgcttgtaa tgagtgcttg
      601 gatggaaatt gataatacaa ataatgtcga attcaaagat ttaccaacct atttcccaga
      661 agtgttcgct gattttgaaa cagaacggga aattacttta gacgtgaatg aatttatgcc
      721 agaagaacgt gttttctata cgtaccaagg ttcacggaca acaccaccaa ccgtggaagg
      781 cgtaacttgg atcgtgttaa aaaatgcgaa gacacttggc caagaagatt tcactgaatt
      841 tgaaaaagca attggtaata caagtcgacc agtgcaagat ttaaatggtc gtgaaattac
      901 tttttacaat taaaaaacta gaaagcctcg ctcgaatctt gtatagtata gacatagatt
      961 ctgagtggag gcttcttttt atgtatgaaa aagcgagaca gatgatgatt gaagcgcata
     1021 gtggccaagt tcgcaaaatt actggcgagc cttatttttc gcaccctttg aacgtagcga
     1081 gaattttgcg ccgcgctggt tttcgcgaag aagttgttgt cgcgggatta ctgcacgatg
     1141 ccgttgagga tacggaaatg accgatgccg atattcgcgc aacatttggt gatgaagtag
     1201 ctgatttagt agcgtctcat acagaaaata aaacgttatc ttgggaagaa cgaaaagccc
     1261 atacgattga acaagtccgc actggcagcc tagaagaaaa agcattaatc gtggcggata
     1321 agctagacaa tttaacctcc gtcaaatatg ccttaagctc agaaggaaag tctgtctgga
     1381 gctattttaa acgcggctat gatctgcaaa aatggtacaa ccaagggatt aaaaataata
     1441 tggaatacgg attaaatcca tctgaaatcc ctccattttt tggtgaatat gcgcgacttg
     1501 tgaagtggat ttttaagaag taaattttgt atttaaatat ctgttaaatt aggtatttag
     1561 aattaaaatt ataagttttt agaaaataag tttctttttc cagaaatcta ttgtaaaatg
     1621 aaagcgttat aaaacttacg agaagggaag ttttttgaat ggtttatgga gcaattgaag
     1681 caggcggaac taagtttgtt gtagcaatcg gagaaaagtc agggaaaatt attaagcgcg
     1741 agagctaccc gacaacggag ccagcagaaa caatgaaagc agtcattcaa ttttttaaac
     1801 agtatgagga tgaattaaaa gcaattggga ttggctcatt tggaccgatt gatattcgga
     1861 aatcaagtgc tacatacggt tatatcacgc aaacaccaaa acttgcatgg cgcaattatg
     1921 atatcgttgg tgcaatgaaa aaagaattta atgtacctat tggttttacg acggatgtta
     1981 atgcagccgc tttaggagag gtaagtttag gcgcggcagc aggtttggat agttgtattt
     2041 atttaacgat cggaacagga atcggtggtg gagcagttgt ttcaggcaaa attcttgaag
     2101 gcttctccca cccagaaatg ggacatatta tggtgcgccg acataagcgc gatcgtttta
     2161 caggcagctg cccgagtcat agcgactgtt tagaggggct tgcagcaggt ggagcaattg
     2221 aaaaacgttg gggtcaaaaa gcagcagaac ttgcggataa tgaagaagtg tggaatttag
     2281 aagcgcatta tatcgctcaa gctttaatga attatacact tatcttatcc ccagaaagaa
     2341 tcgtgttagg tggaggcgtc atgaaacaac gccaactttt cccacttgtt cgtcaaaaat
     2401 tgaaggcact cgttaataat tatgtgcaat tgccggattt agatgaatat atcgttcctc
     2461 caaagttaga agatgacgct ggaattacag gctgtgtctt gctcgctgtg gatgctgaag
     2521 agtccaatta atggcgaaaa acagctctag tttatagggc tgttttttga tatactaaat
     2581 tgtgataaaa caaacaagaa cgcaggagga aaaagatgtc cattacgaac ttattaaata
     2641 ttaaatatcc aattatccaa ggtgcgatgg ctcaaattgc caaagctcca cttgtagccg
     2701 ctgtatctaa tgcaggcggt ttaggaatta tcgcttctgg cggaatgact gccgacatgc
     2761 tacgcgaaga aatcaaaaaa acaaaagcac tgacagataa accatttggc gtcaacttaa
     2821 tgctaatgat gaccaatatt gccgaattaa ccgaagtaat tattgaagaa aaagtgggaa
     2881 tcgttacaac tggagcggga acgccaaaaa cgttcatgcc aatttggaaa gaagctggaa
     2941 ttattgtgat ttccgttgtc ccatccgtga tgattgctaa acgtatggaa aaaatgggcg
     3001 cagatgcagt tatcgcagaa ggaacagaag caggcggaca cgtcggcgaa acaacaacaa
     3061 tggcactttt acctcaaatc gtggatgccg ttactatccc agtcattggc gcaggtggaa
     3121 ttgcagatgg tcgcggaatc gtcgcagcgc ttgctctagg tgcaaaaggt gtccaaatcg
     3181 gaacacgctt cctagcaacc gacgaatgcc cagtacaccc ggactttaaa gcagccgtga
     3241 ttaaagcttc cgaccgcgac acaatggtta ccggaagaaa agccggtgcc cctgttcgct
     3301 cgattaaaaa caaaatgatt aaagaataca tccgtttaga agaagaaaac gccgatcgcg
     3361 acacgttaga agagctaact ttaggttctt tacgaaaagc agtacaagaa ggcgacacag
     3421 acaacggctc tgtcatggcc ggtcaaatcg ctggcttaat tacagaaatc aaaccttgta
     3481 aagatgttat tgaagagatg atgacagatg ctaagaatgt gattgcaggg ttagagttaa
     3541 attaatgttt taaactgctt tcttttgaag cgtttgagta aaatagcttt gataaattcc
     3601 ttaatatatt atttggattt tta
//
LOCUS       DASDXX010000219         3578 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.220, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000219 DASDXX010000000
VERSION     DASDXX010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.220"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..251
                     /locus_tag="U0280_002608"
     CDS             <1..251
                     /locus_tag="U0280_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011702027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF669 domain-containing protein"
                     /protein_id="HEM2272529.1"
                     /translation="KAIQLPNGKDYNTLDELLKDLLTKTCQVTVKNEESEYNGQIYKN
                     LNVKAWAESKITGPLQHVFKKKENELPPVEVNESNLPF"
     gene            274..2562
                     /locus_tag="U0280_002609"
     CDS             274..2562
                     /locus_tag="U0280_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM2272530.1"
                     /translation="MYEQIPDELKKLKQWCAFQLVWDEERGKNKKIPMNANNGSYGNS
                     VDERTWADFETALDSLEKYQFDGLGFYFKKPYFGVDIDDIKDEIEDYLYGNTENIAGE
                     FIQTLSSYTEYSVSGTGIHIIAKGSFPEGGRRKGNIEMYPDGRFFVMTGQVIDNYRQV
                     NEATSAIQYLHTKYIGTNEVRQINNLQSTVDLPVSDIIQRAERSKQGAQFKTLYDGLW
                     DGLYPSQSEADLAFANMLAFWTGCNAEKMDEIFRSSGLYRTKWDQKRGAQLYGEMVIN
                     KAIANTSEVYQPGSDLEGYSITVKNQNRTARKVYGLDDTGNAERFRDKFHDIVRFSYI
                     NKGFYFYDSKVWKYDNIGAVKTLVDDVIKDMKSEFAYMENESDAEKAFMKHLKATRSN
                     KGKTNMLKEAQHLMPVLPDEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIE
                     YTDKIDAPLWQAFLKDIFAGDKELIDYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSV
                     FLDIINDIFGSYATNIQPQTIMVKQQSSNANSDIARLHGARFVTTTEPNEGVRLDEGL
                     VKQLTGGDKVTARHLYKDEFEFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKI
                     PDEKVDKQLKYKLRSELTGILNWAVEGFLKWQREGLGMPKAVEKASSEYKSEMDVITA
                     FIEDCCETGENKQINAKTLYETYREWARDNGQYLMSSTKFGKEMGLKFEKKRSNGQTA
                     YKCITLNKEYNPMNKPFFSTSY"
     gene            2896..3213
                     /locus_tag="U0280_002610"
     CDS             2896..3213
                     /locus_tag="U0280_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VRR-NUC domain-containing protein"
                     /protein_id="HEM2272531.1"
                     /translation="MTAEMDIQNSIRLELSRHGHYVFRANVGKVKLPNGRIFDTGLPK
                     GFPDLFGFRGTDGKMFFIEVKNEIGKLRQEQKNFQQAMEITPAICGVARSAAEAVRIV
                     EEG"
     gene            3215..3427
                     /locus_tag="U0280_002611"
     CDS             3215..3427
                     /locus_tag="U0280_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272532.1"
                     /translation="MKLRDITNSKCDVREYMNVDFPDWLLEQLKDEIDFDIIEALKEY
                     AVIYVKHNALEKEIEPFDIYKKVEEG"
BASE COUNT         1308 a          543 c          766 g          961 t
ORIGIN      
        1 ctaaagcaat ccaattacct aacggcaaag attataatac attggatgaa ttattaaaag
       61 acctgttaac taagacatgc caagttactg tgaaaaatga agagtctgag tataatggtc
      121 aaatttataa aaatttaaat gtgaaagcat gggctgaaag taaaattacc ggaccattac
      181 aacatgtatt taaaaagaaa gaaaatgaat taccaccagt ggaagtaaac gagagtaatc
      241 taccgttcta agcaatgaga ggagcgcaca aacgtgtatg aacaaattcc ggacgaatta
      301 aaaaaattaa aacaatggtg cgcttttcaa cttgtttggg atgaagagcg tggcaaaaac
      361 aaaaaaatac cgatgaacgc aaacaacggt tcatacggta atagtgtaga cgagcggaca
      421 tgggcagatt ttgaaactgc ccttgattcc cttgaaaaat atcaatttga tgggttaggt
      481 ttttacttta agaaaccata ttttggtgtg gatattgatg atataaagga tgaaattgaa
      541 gattaccttt atggtaatac agaaaatatt gctggtgaat ttattcaaac actgtctagt
      601 tacacagaat acagtgtgag tgggacagga attcatatta ttgcaaaagg cagttttccg
      661 gaaggtggtc ggcgtaaagg aaacatcgaa atgtacccgg acggtcgatt tttcgttatg
      721 acaggtcaag taattgataa ctacagacaa gtcaatgaag cgacgtctgc aatacaatat
      781 ttgcatacga aatacattgg gactaatgaa gtaagacaaa taaataattt acaatctaca
      841 gttgatttgc ctgtaagtga tattattcaa cgtgctgaac gaagtaaaca aggcgcacaa
      901 tttaaaacac tttacgacgg attatgggat ggattatatc cctcacaatc cgaagcagac
      961 ttagcttttg caaatatgct ggcattttgg acaggatgta atgcagaaaa aatggacgaa
     1021 attttccgtt caagtggttt gtatcgaaca aaatgggacc aaaaacgtgg agcgcaatta
     1081 tatggagaaa tggttattaa taaagcgatt gccaatacgt cagaggttta tcaaccagga
     1141 agtgatttag aaggttactc gatcactgtg aaaaatcaga atcgaactgc tcgaaaagta
     1201 tatggtttag atgatactgg aaatgcagaa cgtttccgtg ataaatttca tgacattgtt
     1261 cgtttttcat acattaacaa aggattctat ttctacgatt cgaaagtttg gaaatatgac
     1321 aacataggcg ctgtaaaaac acttgttgat gatgtgatca aagatatgaa gagtgagttt
     1381 gcttacatgg aaaatgaatc agatgcagaa aaagcattta tgaaacattt aaaagcaaca
     1441 agaagcaaca aaggtaaaac gaatatgtta aaagaagcac aacatttaat gccagttttg
     1501 cctgatgaat tcgatcgcta caaatatttt ttgaacacac aaaacggata tatcaatttg
     1561 caaaatggag aacttatcaa tcatgacagg caaaaaatgt ttacaaaaat tagcaacatc
     1621 gaatatacag ataaaattga tgcgccactt tggcaagcgt ttttaaagga tatttttgct
     1681 ggtgataaag agttaatcga ttatattcaa aaagcagtcg gttattcatt atcaggatcc
     1741 acgtcagagc aagtcatgtt tatccttttc ggcaatgggc gaaatgggaa atcggttttt
     1801 cttgatatta tcaacgatat ttttggttcc tatgcgacca acatccagcc acagacaatc
     1861 atggtcaaac agcagtctag taatgcaaac agtgatattg cccgtttaca tggcgccagg
     1921 ttcgttacaa ccaccgaacc aaatgagggt gtacgtttag atgaaggact agttaaacag
     1981 ctcacaggtg gcgacaaggt cactgcacga cacttgtata aggacgaatt cgagtttaca
     2041 cccgaattca aaatctggat ggcaaccaac cataaaccaa ttatccgagg gagagacgat
     2101 ggaatatggc gaagattaca cttagtaccg tttaccgtga agatacccga tgaaaaggta
     2161 gacaagcagt taaagtataa acttcgaagc gaactcactg gaatattgaa ttgggcggtc
     2221 gagggctttc ttaaatggca acgagaaggt ttaggaatgc cgaaagcagt agaaaaagca
     2281 agctccgaat acaagtcaga aatggacgtt atcactgcat ttattgaaga ctgttgcgaa
     2341 acaggcgaga acaaacagat caatgctaaa actctctacg aaacatatag agagtgggcg
     2401 agagacaatg gacagtattt aatgagcagc acgaaatttg gtaaggaaat gggtttgaag
     2461 tttgagaaga agaggagtaa cggacaaact gcatataaat gcataacttt gaataaagaa
     2521 tacaatccta tgaacaaacc attcttttca acaagttatt agcagtgcag gttcatctaa
     2581 acttgcactg tgtggaatgt attgcagcag aacgagtttg acggttttag ttagttgaca
     2641 gtgcaggttt gcgccaaaat ccataaactt ctctataaaa atttttccta ggaaactttt
     2701 cttattttac tactaacttg cactattaat aaaaaaagta ttaataaagt aagtgatagc
     2761 aatggatttg ggacagtgca ggtttgaacc aacttgcact aaacttgcac tgacctgcac
     2821 tgttttagct aataatttag cgatttttaa tcaacacata acatatgttc gtatttttga
     2881 ggaaggagca attccatgac agcagaaatg gatatacaga attctatacg tttagaactt
     2941 tcccgccatg ggcattacgt tttccgtgcc aatgttggca aagtgaaatt accaaacgga
     3001 cgaatatttg atacaggatt accgaaaggt tttccagatt tattcggatt tcgcggaaca
     3061 gatggaaaaa tgttttttat tgaagtgaaa aatgagatag ggaagttacg acaagaacag
     3121 aaaaactttc aacaagcgat ggaaataacg ccagctatct gtggagtagc aagaagtgct
     3181 gcagaagccg tgcgaattgt ggaggagggg taaaatgaag ctaagagata ttacaaacag
     3241 taaatgcgat gttagggagt atatgaatgt tgattttcca gattggcttt tagaacaact
     3301 aaaggacgaa atagattttg atattattga ggcgttaaaa gagtatgccg ttatctatgt
     3361 gaagcataat gcgctggaaa aagaaataga accttttgat atttataaaa aagtagagga
     3421 ggggtaaaaa atgaagagcg acgattaaag atgtgatgaa tttagagacc aaggcagtca
     3481 aaatcaatgg aaagactgca cgggtttatc agaagtgtta attgtgtatt tattaggaaa
     3541 tattctgaca atggttacaa aaaatatgta acccagag
//
LOCUS       DASDXX010000220         3545 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.221, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000220 DASDXX010000000
VERSION     DASDXX010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.221"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..448)
                     /locus_tag="U0280_002612"
     CDS             complement(<1..448)
                     /locus_tag="U0280_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272533.1"
                     /translation="MDNCLAQLQMYDYLLKKYRNKEVFPDTRMIVEIDGKLWTGDFLQ
                     LDDCHIIEIDWEDTRFTRIERTKDAINDEFNEKVTNSNVNVSENRIDSKIGSLKNIEI
                     LYQEIGNFVRQVESSTTTLKPLLYNAYCLDTRVKLPFLDISKKEITL"
     gene            637..1551
                     /locus_tag="U0280_002613"
     CDS             637..1551
                     /locus_tag="U0280_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272534.1"
                     /translation="MYKQMKLKATDGLDLHLHIWDEVKNPVGVVQIVHGMAEHGARYG
                     LFAERLNQAGYIVVADDHRGFGKSAIDEASLGHLDGETGFQNMVEDEAVVRTYLKESY
                     PELPYFIFAHSMGSFIIRTFMAKHQVDGVILSGSGLQPIALLKMGQMITKQRVKKDDR
                     KRSGFLNKLAFWGYNKPFNENHRFSWLSRDVAIYEAYEQDPFCGPVVGTSGFFHNLFE
                     AVKVSQQKETLESVPKDLPVLLLSGSDDPVGHFGKDTPKIALSLEKAGVEDVTYKIYE
                     DARHELVNEICKETVFQDVIDWLNEKRR"
     gene            complement(1577..2824)
                     /locus_tag="U0280_002614"
     CDS             complement(1577..2824)
                     /locus_tag="U0280_002614"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEM2272535.1"
                     /translation="MTELIKKGSGAKEAAQFLAQATTKHKNAALLNLSNDLLIHTATL
                     LQENEKDILRAKQKGTPETMIDRLRLTEERIKEISEAVKQVVALKDPIGEVTNMWKNE
                     AELTIGKTRVPLGVIGIIYESRPNVTVDASVLCFKTGNAVILRGGSDAIDSNKALMSV
                     IQDSLEASGFPRSSVQLIEDTSRETARDMMRLNRFLDVLIPRGGARLIQTVLENATVP
                     VIETGTGNCHIYVDKAAEKQMAIDILVNAKCSRPSVCNAAETLLIHRDVAEDYLPAME
                     TALKEYDVELRADERAKEILQEAKAATESDWEDEFLDFILAIKVVDSAEEAIDHINKY
                     GTKHSEAIISNDYATGQAFHQKVDAAAVYINASTRFTDGFAMGFGAEIGISTQKLHAR
                     GPMGLTELTSTKYIIFGDGQIRN"
     gene            complement(2808..>3545)
                     /gene="proB"
                     /locus_tag="U0280_002615"
     CDS             complement(2808..>3545)
                     /gene="proB"
                     /locus_tag="U0280_002615"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEM2272536.1"
                     /translation="IEKLAMVLSDLRNEGKEVILVSSGAIGVGCHKLQLSVRPTSIPD
                     LQAVASVGQSELMHIYSKFFGEYGQVVGQVLLTRDVTDFPISRENVMNTLDSLLSRGI
                     IPIVNENDTVAVEELEHVTKYGDNDLLSAIVAKLVQADLLIMLSDIDGFYGSNPATDP
                     EAVMFSEINQITPEIEALAGGRGSKFGTGGMLTKLSAASYCMDSNQKMILTNGKNPTV
                     IFNIMQGEQIGTLFASKKEELSHDRTH"
BASE COUNT         1104 a          649 c          677 g         1115 t
ORIGIN      
        1 ctaaggtaat ctctttttta ctgatatcta agaatggtaa tttaacccgt gtatctaaac
       61 aataagcgtt atagagtaac ggttttaatg ttgtagtaga actttctact tggcgaacaa
      121 aattgccaat ttcttgatac aatatttcaa tgttttttaa actaccaatt ttggaatcga
      181 tacgattttc acttacgttt acattagagt tcgtaacttt ttcgttaaat tcatcattga
      241 tagcatcttt cgtacgttcg atacgcgtga accgagtatc ttcccaatca atttcgatga
      301 tatggcaatc gtccagttga agaaaatcac cagtccaaag tttgccgtcg atctcgacaa
      361 tcattctcgt atcagggaaa acctctttgt tacggtattt tttgagtaaa taatcataca
      421 tttgtaattg cgctaaacag ttatccatgt gtgtcatctc cttatgggac tattataaca
      481 tattgtgatt atgtgaacaa tcttcaatat agaaatgaat agttggaact gtaacttttt
      541 aactagttat acaaaagtcc taaaaaaagt ctgtgaaata gtgaaaataa ctatcaggtg
      601 gtatactaat aataagatga aatgggaggg agacagatgt acaaacaaat gaaattaaaa
      661 gctacagatg gactcgattt gcatttacat atttgggatg aagtgaaaaa tccagttggt
      721 gtagttcaaa ttgttcatgg gatggcagaa cacggggcaa gatacggctt gtttgcggaa
      781 cgtttgaatc aggctggata tattgtcgta gccgatgatc accgtggttt tgggaaatca
      841 gccatagatg aggcatcttt aggtcattta gatggagaaa ctggttttca aaatatggta
      901 gaagatgagg cggtagtgag aacttattta aaagaaagct atcctgaatt accttacttc
      961 atttttgcgc acagcatggg aagttttatt atacgaacct ttatggcaaa acaccaagtt
     1021 gatggagtaa ttctcagcgg tagcggactt caaccgatag ctcttttaaa aatgggccaa
     1081 atgattacaa aacaaagagt gaaaaaagat gatagaaaaa gaagtggttt tctaaataaa
     1141 ttagcatttt ggggttataa taaaccattt aatgaaaatc atcgttttag ttggctttcg
     1201 cgggatgttg cgatttatga agcctatgaa caagatccat tttgcggtcc agtagttgga
     1261 acaagtggtt ttttccataa tctttttgaa gccgtaaagg taagtcaaca aaaagaaaca
     1321 ttggaaagtg tgccaaagga tttgccagtg ttgttgcttt ctggaagtga tgatccggta
     1381 gggcatttcg gaaaagacac acctaaaatt gctttatcct tagaaaaagc tggggtagag
     1441 gatgttactt ataaaattta tgaagatgct cgtcatgaac tggtgaatga aatatgtaaa
     1501 gaaactgttt ttcaagatgt aattgattgg ttgaatgaaa aaagaaggta gcctaaaatc
     1561 ataggctacc ttctttttaa ttgcggattt gaccgtctcc aaaaataata tatttagtgg
     1621 atgtaagttc tgttaagccc attggtccac gtgcatgaag tttttgagta ctaatgccaa
     1681 tttcagcgcc aaatcccatg gcaaaaccat cagtgaatcg agtagaagca ttgatataaa
     1741 cggctgctgc gtctactttt tgatggaatg cttgaccagt cgcgtaatca ttagaaataa
     1801 ttgcttctga gtgcttggtg ccatatttat taatatgatc aatagcctct tcagcggaat
     1861 cgactacttt aatagctaaa atgaaatcta aaaattcatc ttcccagtcg gactctgtcg
     1921 cagcttttgc ctcttgtaaa atttccttcg cacgttcatc cgcacgtagt tcgacatcat
     1981 attcttttag cgcagtttcc atcgctggaa gataatcttc ggcgacatct cgatgaatga
     2041 gcaaagtttc tgcagcattg catacagaag ggcgcgaaca cttagcatta actaaaatat
     2101 ctatagccat ttgtttctct gctgctttat ctacgtaaat atgacaatta ccagtacctg
     2161 tttcgatgac tggaacagtt gcattttcaa gaactgtttg aattaacctt gcgcccccac
     2221 gaggaatgag aacatctaaa aagcgattta accgcatcat gtctctagca gtttctcgtg
     2281 atgtatcttc aattaattgg acactagaac gagggaaacc agatgcctca agggaatcct
     2341 gaataacgga cattaaggct ttattggaat caatagcatc actaccacct cgcaaaatca
     2401 ccgcatttcc agttttaaaa caaagaacag aagcatcgac agttacattg ggcctagatt
     2461 cataaataat accaataaca ccaagtggaa ctcttgtttt accaatagtt aactcggctt
     2521 catttttcca catatttgtt acttcaccga ttggatcttt taacgcgacc acttgtttaa
     2581 ccgcttccga tatctctttg attctttctt ctgtaagacg aagacgatca atcatcgttt
     2641 caggtgttcc tttttgctta gcgcgaagaa tgtccttttc attttcttgc aaaagtgtag
     2701 ccgtatggat aagcaaatca ttacttaaat taagcagtgc tgcgtttttg tgttttgttg
     2761 ttgcttgtgc tagaaattgg gcagcttctt tagcgccact ccctttttta atgagttcgg
     2821 tcatgtgaaa gttcctcctt tttacttgcg aataaagtac caatttgttc accttgcata
     2881 atattaaaaa tgacggtagg gtttttaccg tttgttaaaa tcattttttg gttagaatcc
     2941 atacaataag aagcagcaga aagcttggtc aacataccac cagtcccaaa tttagaaccg
     3001 cgtcctccag caagggcttc aatttctgga gtgatttggt tgatttcaga gaacataaca
     3061 gcctctggat ctgttgcagg gttactacca taaaagccgt caatatcaga aagcataata
     3121 agcaaatcag cttgaaccag tttagcgaca atggctgaaa gaagatcatt atccccgtat
     3181 ttcgttacat gctccagttc ttctacagca acggtatcat tttcatttac gatagggata
     3241 ataccccggc ttaataaact gtctaaagta ttcataacat tttcgcggct aatagggaag
     3301 tcagttacat cacgtgtaag caacacctgt ccaaccactt gtccatattc accaaaaaat
     3361 ttactataaa tatgcattag ttcactttga ccaaccgacg cgacagcttg aaggtcaggg
     3421 atacttgtag gtcttactga aagctgtaat ttatgacaac caacaccgat tgccccagaa
     3481 gaaacaagaa tgacctcttt tccttcgtta cgtaaatcag ataaaaccat tgctaatttt
     3541 tctat
//
LOCUS       DASDXX010000221         3536 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.222, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000221 DASDXX010000000
VERSION     DASDXX010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3536
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.222"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..201)
                     /gene="ssb"
                     /locus_tag="U0280_002616"
     CDS             complement(<1..201)
                     /gene="ssb"
                     /locus_tag="U0280_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM2272537.1"
                     /translation="MINQVTLVGRLTKEPELKWTAEDRAVLNLTFALNRFGKNKRVDN
                     DADFIQCVIWGKRAEATAEFCAK"
     gene            complement(452..886)
                     /gene="fabZ"
                     /locus_tag="U0280_002617"
     CDS             complement(452..886)
                     /gene="fabZ"
                     /locus_tag="U0280_002617"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEM2272538.1"
                     /translation="MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEF
                     FNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIGLFAGIDGCRFKRQVVPGDQ
                     LLLEAEITRMRGAIAKAKVKATVEGDLVCEAEIMFALSDLPK"
     gene            complement(909..1904)
                     /gene="mreB"
                     /locus_tag="U0280_002618"
     CDS             complement(909..1904)
                     /gene="mreB"
                     /locus_tag="U0280_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HEM2272539.1"
                     /translation="MAKDVGIDLGTANVLIHVKGRGIVVNEPAVVAINNKTGQVLAVG
                     TEARDMVGRTPGDITAIKPMKDGVIADFDIVQEMLRFFIQKLNLKTFFSRPRILICCP
                     TNITSVEQKAIREVAEKSGGKQVFLEEEPKVAAIGAGMEIFEPSGNMIIDIGGGTADV
                     AVLSMGDIVTSQSVKVAGNKWDADILNYVKRKYNLLIGERTAENIKVTIGTACQGAKE
                     EKMEIRGRDLVSGLPKTISITSSEVEEAIHDSLHLMVLAAKQVLEQTPPELSADIIDR
                     GIIMTGGGSLLHGLDELMSEQLKVPVLITENPLDVVALGTGILLDSLTNKKRNRF"
     gene            complement(2067..3359)
                     /gene="murA"
                     /locus_tag="U0280_002619"
     CDS             complement(2067..3359)
                     /gene="murA"
                     /locus_tag="U0280_002619"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM2272540.1"
                     /translation="MEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKN
                     VPNLSDVFTINEVLKYLNADVSFVNDEVTVNATGEITSDAPFEYVRKMRASIVVMGPL
                     LARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAIVKIENGYIEATAEKLVGAKVYLD
                     FPSVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTEVIRIEG
                     VKELTATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHISSLIAKLEEMGVQIIE
                     EENGIRVIGPDKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMH
                     VEEMRRMNADMKIEGHSVIISGPAKLQGAEVAATDLRAAAALILAGLVADGYTQVTEL
                     KYLDRGYNNFHGKLQALGADVERVDDSKIDVTNLASLF"
BASE COUNT         1093 a          770 c          501 g         1172 t
ORIGIN      
        1 tttagcacag aactctgcag tggcctctgc tcttttaccc caaataacac attgaataaa
       61 gtcagcatca ttatcaactc ttttattttt accaaaccga tttaaagcaa aggttaaatt
      121 caaaacagcc ctgtcttccg cggtccattt caattctggt tccttagtta atctgcctac
      181 taaagttact tgattaatca tataatcgcc tctttctttt gatgtaaagc gattgtatta
      241 gataaaaagt ttattgtaaa atagctaaaa ctgtattttc actaggtaga aaccttccaa
      301 aagattattt cctctaaaag aaaaacatca ttttatgtag ttaatgacat ccaaagcatc
      361 attttagtac tttgaaaaaa tttttaacca atgttattct gagaacatga aaaaagcact
      421 aaaacccatt tggacctcag tgctaatctt tttatttagg taggtctgat aaggcaaaca
      481 taatttcagc ttcacaaacc aaatcgcctt ctacagttgc tttgactttt gcttttgcaa
      541 tcgcgcccct catccgagtt atttcagcct caagcaagag ttggtccccc ggaacaactt
      601 gacgtttaaa tcggcaacca tcaattccag caaataaacc aattttacct ttatttgctt
      661 cactctgcat cattgcaatt ccactagttt gcgctagagc ttccactatt aaaactcctg
      721 gcattacagg atactcagga aagtgcccgt taaaaaattc ttcatttgct gttacattct
      781 taatagcggt aacttttttg ccttcttcaa cagaaataac tctatctact aacaaaaatg
      841 gataacgatg aggcaaaatc tctttgattt tcttaatatc taacatatac atcccccaaa
      901 attcacattt agaatctatt acgcttttta tttgtaagtg agtcaagtaa aatgccggta
      961 ccaagtgcca ctacatctaa aggattctca gtaattaaaa ctgggacctt tagctgttcg
     1021 gacattaatt catctaaacc atgtaataaa gatccaccac cagtcatgat gattcctcta
     1081 tcaataatat ccgctgaaag ctctggaggt gtttgttcca acacttgttt agcagctagg
     1141 accattaggt gtaatgaatc gtgaatcgct tcctccactt cagaacttgt aatagaaatt
     1201 gttttcggta agccactcac taaatctcta ccacgaattt ccattttctc ttctttggct
     1261 ccttgacatg cagtaccgat tgttacttta atattttcag ccgttctttc accaataagt
     1321 aagttatatt tacgtttaac ataatttaaa atatctgcgt cccatttgtt tccagcgact
     1381 tttactgatt gactagttac aatatcaccc atagacaata cagcaacatc cgcagtacct
     1441 ccaccaatat caataatcat attaccggaa ggctcaaaaa tctccatacc cgctccaata
     1501 gcagcaactt taggttcttc ttctaagaac acttgttttc caccactttt ttcagcaact
     1561 tcgcgaattg ctttttgctc gacagaagtt atatttgttg gacaacaaat taaaatacgt
     1621 ggccgtgaaa aaaaagtttt taaatttaac ttttgtatga agaaacgcaa catttcttgc
     1681 acaatatcaa agtcagcaat aaccccatct ttcataggtt taattgccgt aatgtctcct
     1741 ggagttctac caaccatatc tcttgcttca gtcccaacgg ctaaaacttg tccagtttta
     1801 ttgttaatag cgacaactgc aggttcatta acgacgattc ctcttccttt aacatgaatt
     1861 aatacattgg ctgtacctaa atcgatacca acatcttttg ccatttacat tttaactcct
     1921 ttcgtggtgt acacctaatt ttacatctca ttctgaatta tagcataatt tatgtgcggc
     1981 tgaaatgtat attttatagc aatgcggaat ttttcatgac aaataaaaaa accgcatcaa
     2041 gaagatacgg tttttaacat ttaaatttag aataaagacg ctaagtttgt tacatcgatt
     2101 ttggaatcat ctacacgttc cacatcagca ccaagcgctt gtagtttgcc gtggaaatta
     2161 ttatagccac gatcaaggta ttttaactca gttacttgtg tatagccatc tgcaactaaa
     2221 ccagcaagaa taagcgctgc tgctgcacgt aaatctgtcg cagcaacttc tgctccttgt
     2281 aatttagctg ggccagaaat aataacagaa tgtccttcaa ttttcatatc agcgttcatt
     2341 ctacgcattt cttctacatg cataaaacga ttctcaaaaa cagtttcagt catgatgctt
     2401 gttccttcac tcagcatttg aataaccatc atttgcgatt gcatatctgt tggaaaacct
     2461 gggtgtggca tcgttttaac atccacagct tttaatttat caggaccaat tacacgaatc
     2521 ccattctctt cttcaatgat ttgaacgccc atttcttcaa gtttagcaat taacgaacta
     2581 atatgctcgg gaactgcatc ttcaattaaa acatttccac cagtaatcgc agcagcaatc
     2641 ataaatgttc ctgcttcaat acggtctgga ataatagaat gttcagttgc agttaattct
     2701 ttaactcctt caattctaat tacttctgtt cctgcaccga taactctagc acccatttgg
     2761 ttaaggaagt ttgctaagtc gacaatttca ggttcacgag ccacgttttc tattactgta
     2821 gtaccttctg ctagagtagc agccatcata atattttgtg tcgctccaac acttgggaaa
     2881 tctaagtata ctttagcacc aactaatttt tcagcagttg cttcaatata gccattttca
     2941 attttcacga ttgcgcccat tgcttcaaaa ccttttaaat gtaagtcaac tggtcttgag
     3001 ccaattgcac atccaccagg taaagctaca cgtgctgaac cagtacgtgc caaaagtggt
     3061 cccattacaa caatggaagc acgcatttta cgaacgtact caaaaggtgc atcagaagtg
     3121 atttctcctg ttgcattgac tgttacttca tcatttacaa aagaaacatc tgcatttaga
     3181 tatttaagaa cctcattgat tgtgaataca tcagacaagt ttgggacatt ttttaatacg
     3241 ctagtacctt tactcgcaag taatgtagca gctattaccg gtaatacagc attcttggca
     3301 ccttccattt tcacagaacc atttaactgt tttccaccgc gtacaataat tttttccaaa
     3361 aagaacccct ccgcgttact aataactaaa tcatttatcg aattttatta atcaaaattt
     3421 gaatttaaaa catatctaag taattctacc acttatcacc ctaaaatatc aactgatttt
     3481 aacgtaatat taaagttgtt ataagcttct attaattttt gactactata gtacct
//
LOCUS       DASDXX010000222         3531 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.223, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000222 DASDXX010000000
VERSION     DASDXX010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.223"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..216)
                     /locus_tag="U0280_002620"
     CDS             complement(<1..216)
                     /locus_tag="U0280_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2272541.1"
                     /translation="MKEKHNPRRKYCLISGLAIIFSLWIIIGNGAKVQAETITVSTPI
                     KQIFPDDAFAETIKDNLKKKSVTDLVTQ"
     gene            complement(301..2694)
                     /gene="inlA"
                     /locus_tag="U0280_002621"
     CDS             complement(301..2694)
                     /gene="inlA"
                     /locus_tag="U0280_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 internalin InlA"
                     /protein_id="HEM2272542.1"
                     /translation="MRRKRYVWLKSILVAILVFGSGVWINTSNGTNAQAATITQDTPI
                     NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQ
                     INFSNNQLTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL
                     KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK
                     VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT
                     DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP
                     ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH
                     NQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDG
                     GSYAEPDITWNLPSYTNEVSYTFNQSVTIGKGTTTFSGTVTQPLKAIFNAKFHVDGKE
                     TTKEVEAGNLLTEPAKPVKEGYTFIGWFDAQTGGTNWNFSTDKMPTNDIDLYAQFSIN
                     SYTATLDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPA
                     KNITLYAQYSANSYTATFDVDGKTTTQAVDYQGLLKEPKTPTKAGYAFKGWYDEKTDG
                     KKWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSNTS
                     TGNSASTTSTMNAYDPYNSKEASLPTTGDSYNALYLLIGLLAVGTAVALTKKARASK"
BASE COUNT          939 a          673 c          600 g         1319 t
ORIGIN      
        1 ttgtgtcact agatccgtca cacttttttt ctttaaattg tctttgattg tttctgcaaa
       61 agcatcatct ggaaaaattt gcttgattgg cgttgacacg gtgatagtct ccgcttgtac
      121 tttcgctccg tttccaataa ttatccataa actaaaaata atagctaaac ctgagattaa
      181 acaatatttc cttcttgggt tgtgcttttc tttcacacta tcctctcctt gattctagtt
      241 attaaaaaat aaaaaagcta gatatagtcc gaaaaccaca tctagctctt tacactactt
      301 ctatttacta gcacgtgctt ttttagtaag agccactgca gttcctactg ctaacaatcc
      361 tatcaacagg tagagcgcat tatagctatc gccagttgta gggagtgaag cttcttttga
      421 attataaggg tcataagcgt tcattgtact tgttgtgcta gctgaattcc cagttgatgt
      481 gttgcttcca ggtatatttg cggaaggtgg tgtagtgttc cctccgttat ttgtagtcgg
      541 cggagtgttc cctccagttg ttggtggtgc cacaggattt ttcgtgaatt gagcgtacag
      601 cgtaatatcg tttgctggca ttttatctgt cgcaaaatcc cattttttac catctgtttt
      661 ttcgtcatac caacctttga aagcatatcc ggcttttgtt ggcgtttttg gttcttttag
      721 aagtccttga tagtctactg cttgagtcgt tgtttttcca tcaacatcaa aggttgctgt
      781 atagctattg gcgctatatt gagcatataa ggtgatgttt ttagcaggca tcttactagt
      841 tgcaaaatcc cacttgtcac cgccagtttt tgcgtcatac cagcctttaa aagtataacc
      901 ttcttttgtt ggtgccgtag gttcttgtag caagccttga taatctactg tttgagatgt
      961 tgttacaccg tcattatcca aggttgctgt gtagctgtta atactaaatt gcgcatataa
     1021 atcgatgtca tttgtcggca ttttatccgt actgaaattc cagttagttc cgccggtttg
     1081 ggcatcaaac cacccaataa atgtgtaacc ttcttttaca ggcttagctg gttcagtcaa
     1141 taaattccca gcttccactt cttttgttgt ttctttgccg tccacatgaa acttagcatt
     1201 aaaaattgcc ttaagtggct gcgtcactgt tccgctaaat gttgtcgttc cttttccaat
     1261 ggtgacagat tgattaaagg tataacttac ttcattggta taactaggta agttccatgt
     1321 tatatcaggt tctgcgtaac taccgccatc gctaatagta gctggtgcaa tcaaagcgcc
     1381 cgtcacattt ttcaccgtgt tgggaatgga tacatttact ttgtagttca ctggtggatt
     1441 tgtccattct tggtcattca atcctaattg ggtaattctt gttaaattag ccaatggtgt
     1501 aagatcgcta atttggttat gcccagccga aagccaatta atattggtta aattcgcaag
     1561 cgagcttacg tcacttacct tgttattata gaaaaataat ctttgaagct ttgttaaact
     1621 agaaactggg cttatatcac ttatattatt aaagtacaac gttaaatatg tgagattttt
     1681 caagttagaa attgggctaa tatcttctaa ctgattttca tttagctcta agttagtgag
     1741 ggcggttaga ccagctaggg gactgatgtt acttatttgg ttagctccca gttttaactc
     1801 agttagtttt gttagacccg acagtggtgc tagattacta atttggttat ttgctaaatc
     1861 taaatctgta aggtttgtta aactcgccaa tgtgcctata tcttttaact ggttaccatt
     1921 taaggataat tcgtccaaat ttgttaaaat cccaagtgga gttatatcac ttatttggtt
     1981 gttagtagcg ataagacttt ctaaattggt taatttagcc agaacactaa tatccgacac
     2041 cttattactt gaaatatcta gtcgttctag tgttgttaaa ttagctaatg gttttaaatc
     2101 tgtcacttga ttaccaaaag ataattgctg tagactagtt aaacctgaaa gcgcactaat
     2161 atcactaatc gtgttactag atagttctag ccgatttaaa tttgttaggt ttttaagcgg
     2221 gtctatatcc gttatctgat tgttgaacaa agtcaaacca gttagattcg tcaaattagc
     2281 tagcggagtt atatctgcta tttgattatt attcatcaaa atatcaacta acttagttaa
     2341 atctttaagt ggcgttatat ccgtaagttg attattgctg aaatttattt gtgttaaatt
     2401 gttcaagtat tccaatccat cgatagattt tatccctaat ctatccgcct gaagcgtcgt
     2461 aacttggtct agatctgttt gcgagaccgt gtctgttaca ttcgtttttc ctaagaccgt
     2521 cttcattttt tccgctagag ctgtatctgt aaaaatctga ttaataggag tatcttgtgt
     2581 aattgtagct gcctgagcat ttgtcccgtt actcgtgtta atccatactc cactgccaaa
     2641 tactaatatt gctactagta tacttttcaa ccatacatat cgttttcttc tcactatata
     2701 cactcctttt tcaatagtta gaaacaatat caggtttcgt tgtataggat tttctcctgc
     2761 atccgaaaaa tcatgtctgc ttactttatt aaactatgcg ccccatgaat tgttcctatg
     2821 gtattcagta gttaatctgt ctacggagct gcttagtgat atctttcatc tcgttcgttc
     2881 cagcacattt tccctatata taatattttt atgtatttca ctatcgaagc ttaataggaa
     2941 ttcaaccatg caaatcatgt tatgttgata ccacacgtgt cattccacct tttaaaatgg
     3001 tctattattg acgaactcaa gccccgcact cttcccgcca aaactctctt tttttcactt
     3061 cttctatata atcacccctt tcaaagccca ttaaataata atagctattt ttctccaaaa
     3121 aagaattaac ttatgttatc ctctaccctt tatgttcaaa ataacacata aggatgtcga
     3181 gatttttggt gaaatgtata caaaaaaaga taacacggtg tgattgtgtt atctttttac
     3241 tttgtatgcg ttgctggttg atagttcttt ttgtttctga actgagaatt gatttcttcg
     3301 agtttaattt ttatatcacg aataggaaaa tcatattcct tccgtaacca cttggcataa
     3361 tctttaaaag ccgttttaat tctagctgaa ctgattcttc tattttcaaa cgaaggtctt
     3421 ttctcaccag cacattactc atagttttta tcatctctct ttttttgaaa gtcttaagcc
     3481 actacaataa tcggatatgt aattaaatta ttagttctta ccgcctcttt t
//
LOCUS       DASDXX010000223         3412 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.224, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000223 DASDXX010000000
VERSION     DASDXX010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.224"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            98..376
                     /locus_tag="U0280_002622"
     CDS             98..376
                     /locus_tag="U0280_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 family protein"
                     /protein_id="HEM2272543.1"
                     /translation="MDEPTKAVIYQILSKTEEQNATMDHLVFEMMQFPGAAAFTKNEL
                     LFGIYWLETYHYIFRMNENQKTRYYRTEKGHEKLAELELLKKNSKKTT"
     gene            complement(404..847)
                     /locus_tag="U0280_002623"
     CDS             complement(404..847)
                     /locus_tag="U0280_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272544.1"
                     /translation="MTASDLEDFLSTAITDYANEKVEAGTWDEEEALAKSQDSFNKLL
                     YDGITTPNEYLYSIISGEKIGYIWFHVDETRSGKHAFIYDFVIFEAFRGKGFGTKTLE
                     ALDALAKEMQITKIELHVFAHNQTAIGLYNKVGFQNTDITMAKYL"
     gene            complement(878..1579)
                     /locus_tag="U0280_002624"
     CDS             complement(878..1579)
                     /locus_tag="U0280_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2272545.1"
                     /translation="MKKTIQSVGVWGDSIMKGVLFNPEKNRYTLLKNNCIKRASEKLG
                     LTFQNHSTMGRTITKGHEILTKDLAKDATNDIAIIEFGGNDCDFNWTEVSENPTAEHI
                     PSTPLNIFETQLLEMIARLKKLDIKPILMTLPPLHAKRYFDFITRNGLNKDNILQFLG
                     GDVEMIYRWQERYSNTISRIAAETGSHIIDVRDSFLAEFHYENLLCADGIHPNEAGHI
                     AMSRKFIQYASFHKA"
     gene            complement(1664..3343)
                     /locus_tag="U0280_002625"
     CDS             complement(1664..3343)
                     /locus_tag="U0280_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272546.1"
                     /translation="MWKKHKWLIIAVLLLVIYVAPLFILGGNSHVRIHDNLDSNVTWY
                     KMVLDSGDYTAKVGTANIDQIMDDSVPRDSFDSEFVGIDWLYMIFSTPIAFAMSQLIT
                     RVFAFLGLFLWARDYLIKDKKYLVPLYFVSLAFALTPFWPSGMLSTLGMPLALWAFLN
                     IRNNKRRIWNVVILTLLPFYSSLILGFCFFLVMVGCIWLYDVFKKKQVNIRFLLSMLY
                     MTLLYALVNYRFIYAMFLHPEPDSRSEFSLPELSFLSSIRLSFKNFIIGHTHDQALAG
                     FVIIPVLLLVLALIIIKREWGKEKLFLWLFGFNLFLSFWYGFWWYRGWNVIKEHVEIM
                     RTFNFSRFHFLQPFLFYGLFALAIVYLIKKGNWWRKLAYVVVALQLVVVFANNSEIYY
                     RTGNGSPSINQFYATEQMEEIKDYIGKPQSSYRVGSIGLHPSVSQESGFYTVDGYVNS
                     YPLAYKRAFRKIIAGELDKSPVLEDYYDNWGNRCYIFSAELGKKYDFGKDSKKHIKQL
                     DFNSEAFKKVGGEYILSAVPIDNASEVGLQFEKAFDNKDSYWKIYLYKATK"
BASE COUNT         1146 a          641 c          573 g         1052 t
ORIGIN      
        1 tggattctgc taggttttaa catattatta ctaattttaa tttattttgt gtaccatatt
       61 ggggaaattg ggatgtttta atagggggat tgatagaatg gatgagccaa ccaaagcagt
      121 gatctatcaa attttatcta aaacagaaga acaaaatgcg acgatggatc atttggtttt
      181 cgaaatgatg caattccctg gtgccgcggc ttttactaag aatgaattgc tgtttggcat
      241 ttattggcta gaaacgtatc attatatttt tcgaatgaat gaaaatcaaa agacgagata
      301 ttaccgaaca gaaaaagggc acgaaaaatt agcagagcta gaacttttaa aaaagaatag
      361 taaaaaaaca acttgatttt ccgggaaatc aagttgtttt ttattataaa tatttagcca
      421 ttgtaatatc agtgttttga aaaccaactt tattatataa gccgatagct gtttgattgt
      481 gcgcaaatac atgtagttcg atttttgtaa tttgcatttc tttcgcaagc gcatctaatg
      541 cttctaaagt ttttgttccg aatcctttac cacggaatgc ttcgaaaatc acaaaatcat
      601 aaatgaaagc atgtttacca gagcgagttt cgtccacatg gaaccaaata taaccgattt
      661 tttcgcctga gataatgctg tagagatatt catttggtgt agtaattccg tcatatagca
      721 atttgttgaa agagtcttgg gatttagcta aggcttcttc ttcatcccat gtgccggcct
      781 caactttttc atttgcgtaa tctgtaatgg ctgtagataa aaaatcttct aaatcagaag
      841 cagtcatagt ttgtaaatgt aaaataaaaa ttcctcctta tgctttatga aaacttgcgt
      901 actgaatgaa tttgcgtgac atggcaatat gaccagcctc gtttggatga ataccgtcag
      961 cacagagcaa attttcataa tgaaattcag cgagaaaact atcacggaca tcaataatat
     1021 ggctaccagt ttcggctgcg atgcgcgaaa tcgtattgct atatcgttct tgccagcgat
     1081 aaatcatctc tacatcgcca cctaaaaact gcaaaatatt atctttattt agtccatttc
     1141 tcgtaatgaa atcaaaataa cgttttgcat gaaggggagg caatgtcatt aaaatgggtt
     1201 taatatccag tttttttagt cgtgcaatca tttcaagtaa ttgcgtttca aaaatgttaa
     1261 gtggggtgct aggaatgtgc tcagctgtcg gattttcgga aacttccgtc cagttaaaat
     1321 cacaatcatt tccgccaaat tcgataatgg cgatatcatt tgttgcatct tttgctaagt
     1381 cttttgttag aatttcgtgg cctttagtga ttgtacgacc cattgtggaa tgattttgaa
     1441 aagtcaggcc aagtttttcg gatgctcgtt taatgcagtt gtttttaagc aatgtatagc
     1501 gatttttttc agggttgaaa agaacgcctt tcataatact atcgccccaa acaccaactg
     1561 actgaatggt tttcttcata atcatcactc cttttattaa tcataccaca aaaaaagcga
     1621 aaggcgcgat tagttcgtta agaaaaaatc acgcctcacg cttttattta gttgctttgt
     1681 ataaatagat tttccagtaa gaatccttat tatcgaaggc tttttcgaac tggagtccga
     1741 cttctgaagc attatcaatc ggaacggctg atagaatata ctcgccgcca acctttttaa
     1801 atgcctctga attaaaatct aactgtttaa tgtgtttttt cgaatccttg ccgaaatcgt
     1861 attttttacc taattcggca gaaaatatat aacaacgatt accccaatta tcataataat
     1921 cttctaaaac aggactcttg tctagctcac cagcaataat ttttcggaaa gcccttttat
     1981 aagcaagagg ataggaattc acatagccat cgacagtata aaagccactt tcttgggaaa
     2041 cagacgggtg cagaccaata cttccgacac ggtaacttga ctgcggttta ccaatataat
     2101 ctttaatttc ttccatttgc tccgtggcgt aaaattgatt aatgcttggc gagccatttc
     2161 cagtgcggta gtaaatctca gagttattag cgaaaacaac aacaagctgc agcgcaacta
     2221 ccacataagc taactttcgc caccaatttc ctttttttat taaataaaca atcgcaagtg
     2281 caaacagtcc ataaaataaa aacggttgta aaaaatggaa gcgcgaaaag ttaaatgtcc
     2341 gcatgatttc cacgtgttct ttgattacat tccaaccacg ataccaccaa aatccatacc
     2401 aaaaagataa gaataaatta aagccaaata gccataaaaa cagtttttct ttgccccatt
     2461 cacgtttgat aataatgagt gcaagtacaa ggagtaatac aggtataata acaaatccag
     2521 ccagtgcctg gtcatgcgtg tgtcctataa tgaaattttt aaagctaagt cggatagaac
     2581 ttaaaaatga taactctggt agactaaatt cgctccttga atccggttcg gggtgcaaaa
     2641 acattgcata aataaaacga taatttacaa gtgcatacag aagcgtcata taaagcatgc
     2701 taagtaaaaa tcgaatattc acttgttttt tcttgaaaac atcgtacaac caaatacatc
     2761 caaccattac taaaaagaaa caaaatccta atattaaact agaataaaat ggaagcaacg
     2821 tcagtataac cacattccaa attcgccgtt tattattcct aatatttaaa aatgcccata
     2881 gagcaagcgg cattccaagc gtactcaaca tccctgatgg ccaaaatggt gttagcgcaa
     2941 aagctaagga aacaaaataa agtggcacga gatatttttt atctttaata aggtaatccc
     3001 ttgcccataa aaataatcct aaaaatgcaa atacacgtgt aattaactga ctcatcgcaa
     3061 aggcaatggg tgtgctgaaa atcatgtaaa gccaatcaat cccaacaaac tctgaatcaa
     3121 atgaatctct ggggacgctg tcatccatta tttgatctat atttgctgtc ccgactttag
     3181 cggtataatc cccgctatcc aaaaccattt tgtaccaagt tacattagaa tccaagttat
     3241 catgaatcct tacatgactg ttcccgccaa gaataaataa tggagcgaca taaattacca
     3301 ataataatac agcaataatt agccacttat gctttttcca catagttctc ctccttcatt
     3361 atctctacta tatatgtacc cgagaaaact attttcaatt atatcaaagg aa
//
LOCUS       DASDXX010000224         3391 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.225, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000224 DASDXX010000000
VERSION     DASDXX010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.225"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            23..1465
                     /locus_tag="U0280_002626"
     CDS             23..1465
                     /locus_tag="U0280_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2272547.1"
                     /translation="MKELLTFPKDFWWGSAWSAEQAEGRGDTGKAKTVWEHWFETEPN
                     RFYEGVGSEITTDHFNRYKEDVQWMKKTGQNSFRISISWARMFPNDGVGEVNPKAIAF
                     YRDLLTEMNENGIKPFANLYHFDMPVALQDAGGWESREVVDAYVHFADTCFKEFGDLV
                     YHWFTFNEPLGPILGGYLEDFHYPNQIDFKRGAQAGFNTILAHALAIKAFKKLNLSSK
                     IGVILNLSPTYPRSQNEYDLEAAEICDAFYTRSFLDPMVKGTFPEKLVEIMREYDQMP
                     EYTEEDLTIIKENTAQILGLNYYEPRRVKARLTAINEKSPFLPDWFFEPHNMPGKRMN
                     IYRGWEIYERGIYDLCIDIRDNYGNIESFISENGMGVANEERFLNEEGQIQDDYRIQF
                     VKDHLAYVHQAIAEGCDIKGYHLWTFIDCWSWINAYKNRYGLVSLDVETGKRTMKKSG
                     EFYKKMSDMNGFEYDTSKLVGTKREETTNG"
     gene            1458..2792
                     /locus_tag="U0280_002627"
     CDS             1458..2792
                     /locus_tag="U0280_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2272548.1"
                     /translation="MAETKKKSIVNGFINVAQRLGGQIHLRSLRDAFASIMPFMILAG
                     FVTLINYVILEPTGFMGKIVNPDTLKTWQEIGISIGNGTLSVITLLVTVAISYHLCLN
                     RGYKNVIAPILVALSSFIVVTPIAMTFLPEGASKSIEVPNVIPVSYTGASGMFVGIIV
                     GLIATDLFIKLSKNKRMQINLTGNIPPAVIKSFNVLIPIMITVIIFSVMSFAVNQVFN
                     MDFNTLVTTIITKPLSYVTTSLPGFLLITSIANLFFGLGIHQAVISGPLLDPFLLQNM
                     QENMVAYANHQEIPHIINMAFKDTFAVMGGSGNTIGLLIAIFIFGKRKDYKDISKLSA
                     APSLFNISEPIIFGLPIVFNPLLIIPFVLAPIFSLTTAYYATAAGWINHVVVQTPWTT
                     PPIISGFLATGGDWRASVLQVIIIVVTVFIYLPFLRMDEKVAFATAQKTEAK"
     gene            2810..3112
                     /locus_tag="U0280_002628"
     CDS             2810..3112
                     /locus_tag="U0280_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2272549.1"
                     /translation="MKNILLVCNAGMSTSFLVEKMKAAGAEQGVEANIWAVSDAELHE
                     NWEKADVILLGPQVGYLKGNTEKVVGGKIPVEVINMLDYGRVNGAAVLERAIELIG"
     gene            3199..>3391
                     /locus_tag="U0280_002629"
     CDS             3199..>3391
                     /locus_tag="U0280_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272550.1"
                     /translation="MKYVKSQMKELVKDSVDLQERLQKLMKEMDLEKTFALKALYHSE
                     VADGGPYQTAYQDLDYKYKD"
BASE COUNT         1071 a          580 c          725 g         1015 t
ORIGIN      
        1 gacaaaaggg aggccataaa aaatgaaaga attattaacg tttccaaaag atttttggtg
       61 gggatcggcg tggtctgcgg aacaagcaga aggtcgcggc gacactggta aggcaaaaac
      121 tgtttgggag cattggtttg aaacagaacc gaatcgcttt tacgaaggcg taggttcaga
      181 aattacaaca gatcatttta atcgttataa agaagacgta cagtggatga agaaaacagg
      241 acaaaattcg ttccggattt cgatttcatg ggcgcgaatg tttcctaatg atggtgttgg
      301 cgaagtgaac ccgaaagcta ttgcgtttta tcgcgattta cttactgaaa tgaatgaaaa
      361 cggtatcaaa ccattcgcca acttatatca tttcgatatg cccgttgcac ttcaagatgc
      421 tggtggctgg gaatcaagag aagttgtaga tgcctatgtt cattttgcgg atacttgttt
      481 taaagaattc ggcgatttag tttatcactg gtttacgttt aacgaaccac taggaccgat
      541 tcttggcggc tatttagaag atttccatta tccgaatcaa atcgacttca aacgcggtgc
      601 acaagctggt tttaatacga ttttggcgca tgcgttagct attaaagcat ttaaaaaatt
      661 aaacttgtca tcaaaaatcg gcgttatttt aaaccttagc ccgacgtatc cacgtagcca
      721 aaacgaatac gatttagaag ctgcggaaat ttgtgatgct ttttacacga gaagcttctt
      781 ggatccgatg gttaaaggaa ctttcccaga aaaattagtt gaaattatgc gcgaatacga
      841 tcaaatgccg gaatacacgg aagaagattt gacgattatt aaagaaaata cggcgcaaat
      901 tcttggccta aattactatg aaccaagacg cgtcaaagcc cgtttaacag caattaatga
      961 aaaaagtccg tttttaccag attggttttt tgaaccgcat aatatgccag gtaaacgaat
     1021 gaatatttac cgcggttggg aaatttatga acgtgggatt tacgatttat gtattgatat
     1081 tcgtgataat tacggcaata tcgaatcatt tatttctgaa aatggtatgg gtgtggcaaa
     1141 tgaagagcgt ttcttaaatg aagaaggaca aattcaagat gattaccgga ttcaatttgt
     1201 caaagatcat ttggcttatg tacatcaagc gattgcagaa ggttgcgata ttaaagggta
     1261 tcatctgtgg acattcattg attgttggtc gtggattaac gcatataaaa accgttacgg
     1321 actcgtttca cttgatgtcg aaactggcaa acgcacaatg aagaaaagtg gcgaatttta
     1381 taaaaaaatg agtgacatga acggttttga atatgataca agcaaactag ttgggacgaa
     1441 aagggaggaa acaactaatg gctgaaacga aaaagaagtc gattgttaat ggatttatta
     1501 atgtagcaca acgtcttggt ggtcagattc atttgcgttc attgcgtgat gcttttgcga
     1561 gtattatgcc gttcatgatt ttagctggtt ttgtcacgct gattaactat gttattttag
     1621 aaccgactgg ctttatgggc aaaattgtta acccagatac acttaaaaca tggcaagaga
     1681 ttggtatttc aatcggaaat ggtacgctga gtgttattac gcttttagtc actgtggcga
     1741 tttcgtatca tttatgtttg aaccgcggct ataaaaacgt tattgctcca attcttgtcg
     1801 ctttatcttc ttttattgtt gtaacaccga ttgcgatgac gttccttcca gaaggcgcat
     1861 caaaatcaat cgaagtaccg aacgttatcc cagttagtta tactggcgcg tcaggcatgt
     1921 tcgtcggtat tatcgttggt ttaattgcaa ccgatttatt cattaaatta tcgaaaaaca
     1981 aacgtatgca aatcaattta acaggaaata ttccaccggc agttattaaa tcatttaacg
     2041 tgttaattcc gattatgatt acggttatta ttttctcagt tatgtcattt gccgttaatc
     2101 aagttttcaa catggacttt aatacacttg tgacaacgat tatcacgaag ccacttagct
     2161 atgtgacgac aagtcttcca ggcttcttgc tgattacttc tatcgctaac ttattcttcg
     2221 gtttgggtat tcaccaagca gttatttctg gtccgttact agatccattt ttacttcaaa
     2281 atatgcaaga aaacatggtt gcctacgcga atcatcaaga aattccgcat attattaata
     2341 tggctttcaa agacacattt gcggttatgg gtggctcagg aaacacgatt ggcttattaa
     2401 ttgccatttt catctttggg aaacgaaaag attacaaaga tatctcgaaa ctatctgcgg
     2461 caccatcact atttaacatc agtgagccaa tcatctttgg tctgccgatt gtgttcaacc
     2521 cgttacttat tatcccgttc gtattagcgc cgattttctc tttaacaaca gcgtattatg
     2581 cgacagcagc aggttggatt aatcatgtag ttgtacaaac cccgtggacg acaccgccaa
     2641 ttatttctgg tttcctagca actggcgggg actggcgcgc gtccgtttta caagtaatta
     2701 tcattgttgt gacagtcttt atctatctgc cgttcctacg tatggatgaa aaagttgctt
     2761 ttgctacagc tcaaaaaaca gaagcaaaat aaggaaggaa gtttaaccaa tgaaaaacat
     2821 tttattagta tgtaatgctg gtatgtccac aagtttctta gtagaaaaaa tgaaagcagc
     2881 aggcgcggaa caaggcgttg aagcaaatat ctgggctgta tccgacgctg aactacacga
     2941 aaactgggaa aaagcagatg tcattttgct tggaccacaa gttggttatt taaaagggaa
     3001 cacagaaaaa gtagttggcg gaaaaattcc tgtcgaagta attaatatgc tagactacgg
     3061 ccgtgtcaat ggagcggcgg tacttgaaag agcaatcgaa ttaatcggtt aaaaaagtaa
     3121 gggagtgtgg cttatagtcg cactcctttt ttatcgggga agaaagtgtt ataatgtgtg
     3181 aaaaggagcg gaattattat gaaatatgta aaatcacaaa tgaaagagct tgtaaaagat
     3241 agcgtagact tgcaagaacg ccttcaaaag ctaatgaaag aaatggactt agaaaaaact
     3301 ttcgctttaa aagcacttta tcattcagaa gtagctgatg gtggaccgta ccaaacagct
     3361 tatcaagatt tggattataa atataaagat t
//
LOCUS       DASDXX010000225         3367 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.226, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000225 DASDXX010000000
VERSION     DASDXX010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.226"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1085)
                     /locus_tag="U0280_002630"
     CDS             complement(<1..1085)
                     /locus_tag="U0280_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2272551.1"
                     /translation="MKTIKLLKLQLENFKGIKELEIDFQDNTSIYGANASGKTTILDA
                     FTWLLFDKDSTNKKDFAIKTLDTEGNVIHKLNHVVTAVLNIDGEQIELSKKYMEKWTK
                     SRGKLEQELTSHTTEYYIDEIKKKANEYKSFISELLDEELFKLITNPLYFNEQFDWKK
                     RRAMLIKIAGDVTDAEVMSADDSLKDLRIFLGKHSIEDKLIQINEQRKNLRKRLELIP
                     ELVNEASKAKQDTTGLNPSDLSGELTVIEEQIQLIEQEKITLKNGGIQTELNKQKANI
                     ELELTKIKANEQKEVQEQLMNKKEEIFTERNGLKNVENEIVESAFLIQRKQEELATKH
                     QELIKLGNEWDTLQVERFDEHRKSCPT"
     gene            complement(1072..1413)
                     /locus_tag="U0280_002631"
     CDS             complement(1072..1413)
                     /locus_tag="U0280_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272552.1"
                     /translation="MTQKSIEEVKFEEAKKLITELQAIATFNESITCAVNVSFNDGKG
                     IHSASSAIGGKSELLKMYGDIAEAIVYEFMKDHDCVCNVNETIEHAIEGALNGFQNFK
                     QDAKEKTDENN"
     gene            complement(1431..1658)
                     /locus_tag="U0280_002632"
     CDS             complement(1431..1658)
                     /locus_tag="U0280_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272553.1"
                     /translation="MQIKTNELIEILKNSRTHSLERVKALEINLFKYKRLNTKPPAQL
                     TERIANHEKKIETIKKLEDELKQSENEVCKF"
     gene            complement(1838..2122)
                     /locus_tag="U0280_002633"
     CDS             complement(1838..2122)
                     /locus_tag="U0280_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272554.1"
                     /translation="MEEIRPLYKKIKIEDTTYIVTLTPINDKSGKKTFKGIMVDMSLD
                     GEHFARDRFASNVDTGVIQNWMLNMHKASQKVERVLEAFEEWDGELNEFW"
     gene            complement(2272..2436)
                     /locus_tag="U0280_002634"
     CDS             complement(2272..2436)
                     /locus_tag="U0280_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272555.1"
                     /translation="MLTAVLITLSLGIVMNIALYAYQKGWEKKNVDTDLDSDCVDTRV
                     TRSDKPNRKC"
     gene            complement(2601..3125)
                     /locus_tag="U0280_002635"
     CDS             complement(2601..3125)
                     /locus_tag="U0280_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272556.1"
                     /translation="MTVIKSSINASKVMRYVDNIPQKQLADLLLTSRPNVSHMQTGRR
                     RMQQDIATSALNNVQSNLFKLALTHEFSELIPDVFDGPAINKNSLSYLVMYEQEANEF
                     SANIDEIMRIFVKPASQLTQGERLTARDGLKELIDALGWGYNLLFYASDYLNIDAHKL
                     ISEQDESWKMKKWI"
     gene            complement(3202..>3367)
                     /locus_tag="U0280_002636"
     CDS             complement(3202..>3367)
                     /locus_tag="U0280_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272557.1"
                     /translation="RLDKDLTQQEVADQCGIPKNTYASIEQGKRRPSPERAKIIASNL
                     GFDWTIFFNN"
BASE COUNT          889 a          684 c          457 g         1337 t
ORIGIN      
        1 caagttggac atgatttgcg atgttcgtca aaacgctcta cttgcaatgt atcccattca
       61 ttgcctagct ttattaattc ctgatgcttg gtagctaact cttcttgttt acgttgaata
      121 agaaaagcag attctacaat ttcattttct acatttttaa gtccatttct ttcagtaaat
      181 atttcttcct ttttgttcat cagttgctct tgtacttctt tttgctcatt tgctttgatt
      241 tttgtaagct caagttcaat attcgctttt tgcttattta gttcggtttg tattccgccg
      301 tttttcaaag taattttttc ttgttcgata agttgaatct gttcttcaat tactgttaat
      361 tcccctgaaa gatcactagg atttaagccg gtagtatctt gtttggcttt agaagcttca
      421 tttacaagtt cggggataag ttctaatctt ttacgcaagt tcttgcgctg ttcattaatc
      481 tgaattaatt tatcttcaat cgagtgcttt ccaagaaaga tccttaaatc tttcagtgaa
      541 tcatctgcac tcattacttc tgcgtctgtt acatcgcctg cgattttaat tagcattgca
      601 cgtctttttt tccagtcaaa ctgttcattg aagtacaatg ggttagtaat tagtttgaaa
      661 agttcctcgt ctagtagctc gctaataaat gacttgtatt cattcgcttt ctttttgatc
      721 tcgtcgatat aatattctgt agtatgactt gttaactctt gttctagttt tcctcttgat
      781 ttggtccact tctccatata ttttttagat aattctattt gctcgccgtc gatattcaat
      841 actgcagtta caacatgatt caacttgtga ataacgttgc cttcagtatc cagcgtttta
      901 atagcaaagt cttttttatt tgtgctgtct ttatcgaata aaagccaagt aaaagcatct
      961 agtatcgttg ttttccccga agcattcgct ccgtatattg atgtattatc ttgaaaatca
     1021 atttctagtt ccttgatacc tttaaaattt tctagttgaa gctttagcaa tttaattgtt
     1081 ttcatctgtt ttctcctttg catcttgttt gaaattttga aatccattta atgccccttc
     1141 tattgcatgt tcaatggttt cattcacgtt gcacacacaa tcatggtcct tcataaattc
     1201 atatacaatt gcttcggcga tgtccccata catctttaag agttcgcttt tccctccaat
     1261 tgcagatgac gcactgtgta taccttttcc atcattgaag cttacattca cggcacaagt
     1321 tatgctttca ttaaatgtag caattgcttg taactcagtt attaattttt ttgcctcttc
     1381 aaatttcact tcttcaatac ttttttgtgt catcttgaat cctccaattt ttaaaattta
     1441 caaacttcat tttctgattg cttcaattcg tcttctaatt tttttattgt ttcaatcttc
     1501 ttctcgtgat tagcaatcct ttcagttagt tgtgccggtg gtttcgtgtt taatcgtttg
     1561 tacttgaata aattaatctc taaagccttg accctttcta atgagtgggt tcttgaattc
     1621 tttaaaattt caatgagctc attagtctta atttgcataa taaagacccc tttctaaaaa
     1681 aataaatttg tcaaaacggg gctaatcgca tatactataa gtaattcaac tcttatattt
     1741 agcgaatagc tatctatgtc agactcgtgt tagcgcacga gtttattttt ttgtcgttac
     1801 aatcattact ccttctacaa tcgtgatgct ttgtgtatca ccagaattca ttcaattcac
     1861 catcccactc ttcaaaagcc tcaagaactc tttcaacttt ctgcgatgct ttatgcatgt
     1921 tcaacatcca attttgaata actccagtgt ctacatttga agcaaatcta tctctagcaa
     1981 aatgttcacc gtctaaggac atatctacca tgattccttt gaaagttttc tttccgctct
     2041 tatcattgat aggtgttaaa gtcacaatat acgtagtatc ttcaatctta atttttttat
     2101 acagtggtct tatttcctcc attttctaaa tcctccttct tcgcttttaa aagccactat
     2161 taatgctaca aacactccaa atccaacaaa caataatcct atattcattt gtaaatccag
     2221 ctttcatacc agttagccaa gccaactttt tttatcttct tgtataacct tttagcattt
     2281 tctattaggt ttatcagacc gagtaacacg agtatccaca caatcgctat ccaaatcggt
     2341 atcgacattt ttcttttccc aacccttctg atacgcataa agcgctatat tcattacaat
     2401 tccaagactc agtgtgatta atactgctgt taacattttt ttcgctcctc ttcttctagt
     2461 ttttttatta ttcgcggaaa agagcggctt ttaaagaagt taaacatagc ttgttcttgc
     2521 tcttgagtta gttctgtata aactatttca accttcacag cattttcctt atcacaaact
     2581 ttgctcatat ttccaacacc tcaaatccat tttttcattt tccagctttc atcttgctca
     2641 cttattaatt tatgtgcatc aatgtttaga taatcacttg cataaaataa aaggttataa
     2701 ccccaaccaa gcgcatcgat taattccttc aaaccatctc ttgcggttag cctttctcct
     2761 tgtgttaatt ggcttgctgg ctttacaaaa atcctcatta tctcgtcaat atttgcactg
     2821 aattcattag cttcttgttc atacatgaca agatatgata acgaattttt attaattgca
     2881 ggaccgtcaa aaacatctgg aattaattca ctaaattcat gcgttagtgc taatttgaat
     2941 aaattacttt gcacattatt taatgctgaa gttgcaatat cttgctgcat ccttcttcta
     3001 cctgtttgca tatggcttac attaggtcta cttgtcaaaa gtaaatccgc taattgtttt
     3061 tgaggaatat tatccacata acgcataact tttgatgcgt taattgaaga tttaattact
     3121 gtcacttgct ctcctttccg atgtatcatt ttttttacgc atgatacata tccttaagtt
     3181 aaaataatac atatcgcgta cttaattgtt aaaaaaaata gtccagtcga atcccaaatt
     3241 gctcgcgatt attttcgcgc gttcgggaga aggccgtctt ttaccctgtt caatagatgc
     3301 atatgtgttt ttaggtatac cgcattgatc agctacttcc tgttgtgtca agtctttatc
     3361 taatcta
//
LOCUS       DASDXX010000226         3292 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.227, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000226 DASDXX010000000
VERSION     DASDXX010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.227"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..926
                     /locus_tag="U0280_002637"
     CDS             <1..926
                     /locus_tag="U0280_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272558.1"
                     /translation="VTLDIKDGEFFVFIGPSGCGKTTTLKMINRLIPLTTGTIYINEK
                     RISDYDIHELRWDIGYVLQQIALFPHMTIEENIAIVPELKKWSKEKIHDRITELLDSV
                     GLDPESYRHRKPAELSGGEQQRVGVVRALAADPGIILMDEPFSALDPISRQRLQQDIS
                     ALQKKIKKTIVFVTHDMQEALALGDRICVMQGGEIVQVATPQEIMKNPENDFVKDFLA
                     SGHAFNTPILEANFTVKDLIEADLFYSYQTSDGTLGISSAEPVENLVRRIAEEQSIPV
                     TDEAGNFIGTVSNKHVMQFLARHLESSGELV"
     gene            923..2437
                     /locus_tag="U0280_002638"
     CDS             923..2437
                     /locus_tag="U0280_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HEM2272559.1"
                     /translation="MNTLIDTFTVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYL
                     TRHKRLAEPIIQVAAIFQTIPSLALLGLLIPLVGIGIVPAIIALVIYALLPILRNTYT
                     GIKEVDPALVEASRAMGMNKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIG
                     AGGLGDLILLGIDRNDNSLILLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGIL
                     LTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSF
                     VFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFNMSYLKPMK
                     YNNTYALAVSPEFAKENNLEKISDLGPVSDQVKAGFTLEFKDRSDGYKGIQDKYGLTF
                     SNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLT
                     KTLEKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKDQGIIK"
     gene            complement(2473..>3292)
                     /locus_tag="U0280_002639"
     CDS             complement(2473..>3292)
                     /locus_tag="U0280_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272560.1"
                     /translation="LLKQHKRLLEQQHKLPYTINLSGEVFTIIIYTKLSKVAGVTVLN
                     SQEEPATVKEAEAVVNRIQKYNFYFEYLGKRAHVIKERDSIIAEKIEQTQLILNDNTI
                     FGEKMQPTIDELNLAMEVYKQQQRKMDVYQEDITLLNQKIKMQGEILEEDWESAENLS
                     IAFAKAAYAQSIYLEATRKNRKQLAKWFHLHQKELPTDKQKALSKMVSVLSDTNAGLV
                     FDQIISLRPLLEEGLMLDHEQSLTQRAAEFNKEFETHCRFYKPNINKVKNLIRQ"
BASE COUNT         1028 a          570 c          616 g         1078 t
ORIGIN      
        1 atgtaacttt ggacataaaa gacggcgagt tctttgtttt catcggaccg agtggttgcg
       61 ggaaaacaac aacactaaaa atgattaatc gcttgattcc actgacaact ggaaccattt
      121 atattaatga aaagcgaatt agtgattatg atattcatga acttcgctgg gatatcggct
      181 atgttttaca acaaattgcg ctctttcctc acatgactat tgaagaaaat atcgctatcg
      241 ttccggaatt aaaaaaatgg agcaaggaga aaattcatga ccggattacg gaattattag
      301 atagtgttgg cttggatcct gaaagttatc gtcatcgcaa accagctgaa ttatctggtg
      361 gtgaacagca acgggttggt gttgttcgtg cccttgcagc agatcctgga attattctga
      421 tggatgaacc ttttagtgca cttgatccga tttctcgcca acgtttgcaa caagatattt
      481 ctgcgcttca aaagaaaatc aagaaaacga ttgtatttgt tacccatgat atgcaagagg
      541 ctttagcgct tggtgacaga atttgcgtaa tgcaaggcgg tgaaattgtc caagtagcaa
      601 caccacaaga aattatgaaa aatccagaaa atgacttcgt taaagatttc ttagcatctg
      661 gacatgcttt caatacgcca attttagaag caaactttac ggtgaaggac ttaatagaag
      721 ctgacctgtt ttattcgtat caaactagtg atggcacact tggaatttca tcagcggagc
      781 ctgtcgaaaa ccttgttcgg cgaatcgcgg aagaacagtc aattcctgtc acagacgaag
      841 caggtaattt tatcggtaca gtttcaaata aacatgtgat gcaattctta gcgcgtcatc
      901 tggaaagttc aggtgagctt gtatgaatac tcttatagat acatttactg tccgtaaaga
      961 tgaactattc acagctttag tacaacatat tcaaatttcc tttgtctctc tttttatagc
     1021 ggtgttaatt gccttacctc ttgggattta tttaactaga cataagcgtc tcgctgaacc
     1081 aattattcaa gtagccgcta tttttcaaac aattccttct ctggcactac ttggtttgtt
     1141 aattccgctc gttggtattg ggatagttcc agcgattatt gcgcttgtta tttacgccct
     1201 cttacctatt ttaaggaata catatactgg gataaaagaa gtcgacccag cccttgttga
     1261 agcctcacgc gcaatgggaa tgaacaaatg gaaaagatta tacaaagtac aacttcctct
     1321 tgctatgcca gtaattatgg ctggtattcg tacagcgatg gtattaatca tcggtacagc
     1381 gacacttgct gccttaattg gtgcaggtgg actcggggac ttgattctac tagggattga
     1441 ccgcaatgat aatagtttaa ttctattagg tgcaattcca gcagcgttac tagcgatttt
     1501 gtttgatttc ttactacgtt tccttgaaaa agcatctttt aaaagcacaa ttattacgat
     1561 ttcagcaggt atcttattaa ctgccgcaat tatcgtcgtt ccttattttg cgtctgataa
     1621 aaaagaaatt acgattgcag gtaaattagg tgcagaacca gaaattttga ttaatatgta
     1681 caaactagtt attgaggacg aaacagattt aaaagttaat gtgaagccga atatgggtaa
     1741 aacgagtttc gtttttaatg cattaaaatc aggtgatatt gatatttatc ctgaatttac
     1801 aggaacagtg ctagagacat tcttaaaaga aaatgcaaaa acacatgatc ctgaagaagt
     1861 gtatacgcaa gcacgtgatg gtttggcaaa agattttaat atgtcttatt taaaaccgat
     1921 gaaatataat aacacctatg ctcttgcggt ttcaccagaa tttgcaaaag aaaataattt
     1981 agaaaaaata tctgatcttg gcccagtatc tgaccaagta aaagctggat tcacactgga
     2041 gtttaaagac cgttcggatg gttataaagg cattcaagat aaatatggtc tcacattctc
     2101 taacctgaaa acaatggagc caaaactgcg atataatgca attaaatctg gagacatcaa
     2161 tttactagat gcttactcaa cagatagtga actcgcccaa tataaattaa aagtcctaga
     2221 agacgatcag cagctcttcc ctccttatca aggtgcaccg cttatgctga caaaaacatt
     2281 agaaaaatac ccagaactga aaaaaccatt aaataaacta gctgggaaaa ttacagatga
     2341 tgaaatgcgt aaaatgaatt atgaagtgaa tgtaaatggc aaatcagctt atacagttgc
     2401 caaagactat ttgaaagatc aaggtattat taaataaaaa agcgaagtgg tttttacgcc
     2461 acttcgcttt ttttattgtc taattaagtt tttgacttta ttaatgtttg gtttataaaa
     2521 acgacaatgt gtttcaaatt ctttgttgaa ttcagcagct ctttgggtta gtgattgctc
     2581 gtgatcaagc atcaagcctt cttcaagtag tggtctaagt gaaataattt gatcgaaaac
     2641 aagaccggca tttgtgtcac ttagaacaga taccatttta cttaacgctt tttgtttgtc
     2701 agtaggtaat tctttttgat gaagatggaa ccattttgct aattgtttgc gattttttcg
     2761 ggttgcttct aaataaatac tttgcgcata agctgcttta gcaaatgcaa tcgataaatt
     2821 ttcagcggat tcccagtctt cttctagaat ttcaccttgc attttgattt tttgattgag
     2881 tagagtaata tcttcttgat aaacatccat tttgcgttgt tgttgcttat aaacctccat
     2941 cgctaaatta agttcatcaa tagttggctg cattttttca ccaaaaatag tattatcatt
     3001 taaaatcaat tgtgtttgct ctattttttc agcaataatg ctatcgcgtt ctttgattac
     3061 atgtgcgcgt ttgcctaagt attcaaaata gaaattatac ttttgaatgc gattaactac
     3121 tgcttctgct tctttcactg tggctggttc ttcttgtgaa tttaatactg tcacaccagc
     3181 tactttactt aatttagtat aaataataat tgtgaaaact tctccgctca aattgattgt
     3241 gtacggtagt ttatgttgct gttctaaaag ccttttatgt tgttttaata gt
//
LOCUS       DASDXX010000227         3271 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.228, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000227 DASDXX010000000
VERSION     DASDXX010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3271
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.228"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(88..1419)
                     /gene="fepA"
                     /locus_tag="U0280_002640"
     CDS             complement(88..1419)
                     /gene="fepA"
                     /locus_tag="U0280_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter FepA"
                     /protein_id="HEM2272561.1"
                     /translation="MAKNMEILETDSVKKIYFRYLIPSLVGMLLMSLNIVIDGIFVGH
                     KLGGVALAGINIAVPVFTIFTAISIWIGIGAATQFSFAIGEKNVAKAQTIFTNAILAV
                     VSITVIIGIIAFIFKVPLAYFLGANDDTIGYVLEYMNILLVFGFALTLENILSIFVRN
                     DGDPNLSMIALIVTAISNVILNYLFLFVFEWGVTGSALATMIAIIIGVLILITHFFKK
                     SSRLKFVKVDWNKAFFKKTLAIGLPSFLAEVGVSVFTLGYNISIAAIAGTAGVAAFSV
                     LNYTHSVILMLFLGMGSAIQPLISYYRGAKARQKEIETLKIAIMVAFSTGVGFLLVGL
                     FGSNLLVSMFGNFSPEIKDLASNGIKLFYTAYLFMGFNFVMMTYFQTSDKVKMATWIT
                     ISREIIFMVIFLLVLPPIIGIPGVWLAIPISEMIVAASIIFYMKKKHILFK"
     gene            complement(1429..2019)
                     /locus_tag="U0280_002641"
     CDS             complement(1429..2019)
                     /locus_tag="U0280_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2272562.1"
                     /translation="MRKEEIKQAALTLFANNGFEGTSLADIAGVVGLKKQSIYSHFKD
                     KDDLFLSIMKDAKSTEIDYYRAKLRDSDLSRPDLVLSSLLFGVKELYDTDEAYQFWLR
                     YGFYPPKHLYEVVQADITENVLQMEHEFTNLFSNWMEQKLIPMQDVETMKEAYMGILD
                     AVIVDIVYVNDPERTEKKITALWQIFWRGITLKALN"
     gene            complement(2130..3173)
                     /locus_tag="U0280_002642"
     CDS             complement(2130..3173)
                     /locus_tag="U0280_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272563.1"
                     /translation="MKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKEYNPEVLENL
                     DEASQKFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRI
                     YTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPA
                     AVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQIL
                     LYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRS
                     KDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATD
                     ETYELISEFLEEK"
BASE COUNT         1028 a          699 c          528 g         1016 t
ORIGIN      
        1 aattcatctt acttccacct ttttcaagtc catatttagt attaatttcc taaaaagacg
       61 aagatatcat ctatctttgt ctcattttta tttaaataga atatgttttt tcttcatata
      121 gaatatgatg gatgctgcta caatcatttc tgaaattgga attgctagcc aaacgcccgg
      181 gataccaatg attggtggca acactaatag gaagatgacc atgaaaataa tctcacgcga
      241 tatcgttatc catgtagcca tttttacctt gtccgatgtt tggaaatagg tcatcataac
      301 aaagttgaag cccatgaaca gataagctgt atagaataat ttgataccgt tacttgctaa
      361 atctttaatt tccgggctaa agttcccgaa catcgaaacg agcaagttgg aaccgaagag
      421 accaacgagc aaaaagccta ctccagtgct gaacgctacc ataatcgcaa ttttcaacgt
      481 ttctatttct ttttgtctag ctttcgcgcc ccgataataa ctaataagtg gttgaatcgc
      541 ggaccccatt ccaaggaaca gcatcaaaat cacactgtgc gtataattga gtaccgagaa
      601 cgccgccaca ccagcagtcc cagcaatagc cgcaatcgaa atattataac ctagcgtaaa
      661 tacagacacc ccaacttccg ctaaaaagct cggtaagcca attgctaaag ttttcttaaa
      721 aaacgctttg ttccagtcca ctttgacaaa ttttaaacga cttgattttt tgaagaaatg
      781 ggtaattaaa atgagtacac cgataatgat tgcaatcatc gtagcaagcg cagaacccgt
      841 aacgccccat tcgaatacaa ataagaataa atagttcaaa ataacattac tgattgctgt
      901 tacaataagc gcaatcatcg ataaattagg atcgccatcg ttacgtacaa aaatacttaa
      961 aatattttct agtgtaagcg caaatccaaa tacgagcagg atattcatat actcgagcac
     1021 ataaccaatc gtatcatcat tcgcacctaa aaaataagct aatggtactt taaaaataaa
     1081 cgctataatt ccaataataa cagtgattga aacaacagct agaatcgcat tggtgaaaat
     1141 cgtttgagct ttcgcgacat ttttctcccc gatcgcaaag gaaaattgag tcgcagcacc
     1201 aatcccaatc caaatagaaa tcgctgtaaa aatcgtaaat acaggcaccg ctatatttat
     1261 cccagccagc gccactccgc cgagcttatg cccaacaaaa attccatcaa tcacaatatt
     1321 taaagacatt aacaacattc ccactaagga aggaattaaa tatctaaagt aaatcttttt
     1381 aactgaatct gtttctaaaa tttccatatt ttttgccata ctacacctct aattcaaagc
     1441 ttttagcgta attcctctcc agaaaatttg ccataaagct gtgattttct tttccgttct
     1501 ttctgggtcg ttcacgtaca caatgtctac gataactgcg tcgagaattc ccatataagc
     1561 ttctttcatc gtttccacat cttgcattgg aattaacttt tgctccatcc aattgctaaa
     1621 taaattagta aattcatgtt ccatttgtag cacgttctcg gtaatatctg cttggaccac
     1681 ttcatacaaa tgcttcggcg gataaaaccc gtaacgcaac caaaattgat aggcctcgtc
     1741 cgtatcgtat aattccttca caccaaaaag taaactagac aaaacaagat ctggtctgga
     1801 taaatcacta tcccgaagtt ttgcccggta gtaatctatt tctgttgatt tcgcgtcctt
     1861 cataatggat aaaaacaaat catctttatc tttaaaatga gaatagatgg attgtttctt
     1921 cagccccaca acccctgcaa tatcagcaag cgatgttcct tcaaaaccgt tattagcaaa
     1981 aagtgtcagt gcagcttgtt tgatttcttc ttttctcatc attccactcc tctcgcaaaa
     2041 actgacgacc gttcgtaagt cattctctca cgaaaaaatt tctttgtcaa caaaaaaatc
     2101 cactctaata aaagagtgga ttcatggatt tatttttctt ctaaaaactc gctaatcaat
     2161 tcgtatgtct catcggtcgc ttctgagtta gttgtcatga agccatgtgg aactttttca
     2221 aagcgtttgg caaatacttc tacgccggcg tcttttaatt tcttcgcata tgcttcccct
     2281 tgatctctaa gtggatcaaa ttcagcagtc gcaataaatg tttttggaag tccgactaaa
     2341 tctttgctac gtattggtgc aacgagtgga tcgtatttac gatcgcttgc attcgcaata
     2401 tataatttaa agaatttatc taatgattct ttcgtaagca cgtagccttc tgcaaattca
     2461 tccattgaag gataaagaac agacgcatca cgactgaaaa tatctgtcgc tggataaagt
     2521 aaaatttgag cagtgatatt tggtttacct tttgatttag caatttgagt cacaacggtt
     2581 gctaagtttc ctcctacgct atctcctgca acgataatgt ctgaggattt agctcgcaag
     2641 ctagtacgat gattttgaac ccatagtagc gcggcatagg catcttccac tgctgctggg
     2701 aatggatttt ctggagcaag tcggtaatca acagtaacaa cgcgagcgcc tgttgtttga
     2761 acaagttttc tggcaatcgc gtcatgcgtt tgcagtccgc ctagaacaaa tccgccacca
     2821 tgatagtaaa cgataatttc aaaaggtccg tcttcttgcg gcgtataaat tctaattgga
     2881 attttgccag ccgggccatc aattttttta ttttcaacat cgccaatttc gatatctttt
     2941 gctgaaggta atgcttttgt cgctagtctc atatatttat atcgcgaatc tacgtcggat
     3001 aacggtgaag tgtttttcac aaatttctgt gaagcttcat ctaaattctc cagtacctcg
     3061 ggattatatt cttttttccc aaccgctttt ttgtaaataa agaaaacgat taataatgga
     3121 agtagaatga tcccagcaaa accgatagcg atccatttta ttgtattttt cacattcgct
     3181 caactccttc aatataactt cattaacaag tatagcagtt ttacgaacag gaaccaattt
     3241 attactattt gaaatgatta tttttatttg a
//
LOCUS       DASDXX010000228         3256 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.229, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000228 DASDXX010000000
VERSION     DASDXX010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.229"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            61..1134
                     /locus_tag="U0280_002643"
     CDS             61..1134
                     /locus_tag="U0280_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM2272564.1"
                     /translation="MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDG
                     LGGIFGVRHGAEGGPRVLVAAHMDEVGFMVTRITENGLIRFQTIGGWNPQVLQAQRVQ
                     IMAPNGPVIGVVASVPPHLLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIV
                     PVAEFTPLANPKKILAKAWDNRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRG
                     AGVSANMIKPDLFFALDASPANDTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLL
                     DTAETNKIPYQYFVSPGGTDAGKVHTSLSGIPSAVIGVPARYIHSSNSILHVDDYAAA
                     KEMITTLIRSLDKTTYETIKNNA"
     gene            1127..1345
                     /locus_tag="U0280_002644"
     CDS             1127..1345
                     /locus_tag="U0280_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272565.1"
                     /translation="MREIIKKPVIVVGLFLLVASLVFLLGYVTDLPYFRDSELGWIWT
                     TMIAGIVTLFFGYFHDFLEKKKARSKVR"
     gene            1460..1771
                     /locus_tag="U0280_002645"
     CDS             1460..1771
                     /locus_tag="U0280_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2272566.1"
                     /translation="MKKLESVEQFDAIKSEGKSVFMFSADWCGDCKFIEPVMPEIEAE
                     NEDFVFYHVDRDEFIDLCADLAIFGIPSFLAFEDGEEVGRFVSKDRKTKEEINDFLAA
                     I"
     gene            1806..2606
                     /locus_tag="U0280_002646"
     CDS             1806..2606
                     /locus_tag="U0280_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1444 domain-containing protein"
                     /protein_id="HEM2272567.1"
                     /translation="MAKMTTLKMKEKLEKELQAPNRQFSYNRDNDTLTVAQNGKKVTL
                     TIPQIIANFENDGNAAVEKIVYYVEEGFRAAAGNVELENNKASIYPVVRATSFPDETK
                     AGEALLTDDHTAETKIFYAVDLGKSYRFIEESMLKKAQLTHKEIREVAFNNLANLEIP
                     LKKDSVNGNDFYFVRTNDGYDASRLLNEAFLREMREKLTGEMVLAVPHQDVLIIGDIQ
                     DNTGYDVLAHMTMDFFADGLVPITSLPFVYNNGKLEPIFIMAKNRLKE"
     gene            2612..3229
                     /locus_tag="U0280_002647"
     CDS             2612..3229
                     /locus_tag="U0280_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 domain-containing protein"
                     /protein_id="HEM2272568.1"
                     /translation="MIVNAFYNKEGVGDTLLIETGEVTFENREWERRGDVARIFDRET
                     KELAGYNIFNSSNYFNITANGKVDLTEELVAQMNQVIEKAGFEPEIVADLSPKFVVGY
                     VESKEKHPNADKLNVCKINVGDEVLQIVCGAPNIDAGQKVVVAKIGAVMPSGLIIKPS
                     NLRGEDSFGMVCAARELAIPDAPTEKGIMVLEESAVVGEAFPVNF"
BASE COUNT         1006 a          497 c          808 g          945 t
ORIGIN      
        1 cggaaacgga tattatttgc tataataaaa gagattttag acggaaagag atgattatta
       61 atggaaaaag aaacgttagc gatgtttaaa gaattaacgg aacttcaagg gacttcgggt
      121 gatgaacata gaattcgtgc ttttatgcga aaagaacttg aaccggtttc cgatgaaatt
      181 atccaagacg gcttaggtgg tatttttggt gtgcgccacg gagcggaagg tggtccacgc
      241 gtccttgttg cggctcatat ggatgaagtt ggctttatgg taacgcgaat tacagaaaat
      301 ggtctaatac gttttcaaac aattggtggt tggaatccgc aagttttaca ggcacagcga
      361 gtgcaaatta tggcgcctaa cggtccggtt attggggtag ttgcttctgt tccaccgcat
      421 ttgttgtcgg aggctgaacg tagcaaacca acggatccta aaaacttact aattgatatt
      481 ggtgcggatg ataaagcgga cgcggagaaa attggtatca aaccagggca attcattgtt
      541 cctgtggctg aattcacgcc gcttgcgaat ccaaagaaaa ttttagcgaa agcatgggat
      601 aatcgttatg gcgttggtct tgcgattgaa cttatgaaag aattgaaagg cgaatcgttg
      661 ccaaatacac tttttgctgg ggcgaatgtg caagaagaag tcggtctgcg cggtgcgggc
      721 gtaagtgcga acatgattaa accagattta ttcttcgcgt tagatgctag ccctgcaaat
      781 gatacgactg ggaataaatc gcaattcggt caaattggtc aaggtttctt actgcgtatt
      841 tttgaccgga cgatgattat gcatcgaggt atgcgtgaat ttttattaga tactgcggaa
      901 acaaataaaa ttccttatca atattttgtt tcgccaggag gaacggatgc tgggaaagtg
      961 catacatcgc ttagcgggat tccgagtgca gtaattggtg ttccagctag atacattcac
     1021 tcgtctaact cgattttaca tgtggatgac tatgctgctg caaaagaaat gattacaacg
     1081 cttattcgca gtttggataa aacgacctac gaaacaatta aaaacaatgc gtgaaataat
     1141 aaagaaacca gtaattgttg tggggttgtt ccttttggtg gcgagtttag tattcttgct
     1201 aggctatgtt acggacctgc cttattttcg tgattcagag cttggttgga tatggaccac
     1261 tatgattgct gggatcgtga cattattttt cgggtatttc cacgattttt tagaaaagaa
     1321 aaaagcgcgc tctaaagtac ggtaaaaaaa gtttggctcc ttcgttgggg ttggactttt
     1381 ttcatgagcg ttattctgga cgaaagtttt gttaggcggt aggatttaac tagtatgaga
     1441 ttagaaggag cgtatggaaa tgaagaaatt agaatcagta gaacaatttg acgctattaa
     1501 atcggaaggc aaatccgttt ttatgtttag tgctgattgg tgtggcgact gcaaattcat
     1561 cgaaccagta atgcctgaaa tcgaagcgga aaatgaggac tttgtctttt accatgttga
     1621 tcgagatgaa tttattgatt tatgtgctga tttagcgatt tttggtattc cgagcttttt
     1681 ggcgtttgaa gacggtgaag aagtggggcg ttttgtaagt aaagatagaa aaacaaaaga
     1741 agaaattaat gattttctag ctgcgatata aaaagtgact gctttttatg gaaggggagg
     1801 cacttatggc aaaaatgact acattaaaaa tgaaagaaaa acttgaaaaa gaattacaag
     1861 cgccgaatcg gcagttttca tataatcgag acaatgacac gctaacggtt gcgcaaaatg
     1921 gtaaaaaagt aactctgacc atcccgcaaa tcattgcgaa ctttgaaaat gatggtaatg
     1981 cagcggtgga aaaaattgtt tattatgtgg aagagggttt tcgggcagcg gcgggaaatg
     2041 ttgagctgga aaataataag gcgagcatct atccggttgt acgtgcaact tcttttcctg
     2101 atgaaacaaa agctggagaa gcgctgttaa cggatgatca tacggctgaa acgaaaattt
     2161 tctacgcggt tgatttgggg aaatcctatc gttttattga agagagtatg cttaaaaaag
     2221 cacaactaac gcataaagaa ataagagaag ttgcttttaa taatttagcg aatctagaaa
     2281 tcccgctaaa aaaagattct gttaatggta atgactttta tttcgttcgc acaaatgatg
     2341 gttacgatgc tagtagattg ttgaatgaag cgttccttcg cgaaatgcgc gagaagttaa
     2401 cgggggaaat ggtgcttgcc gtaccgcatc aagacgtttt aattatcggg gatatccaag
     2461 ataatacagg ttacgatgtt ctggctcata tgacgatgga cttttttgcg gatgggcttg
     2521 taccaattac ctctttgcca tttgtctata ataatggtaa acttgaaccg atatttataa
     2581 tggcaaaaaa cagattaaag gagtagaaaa cgtgatagta aacgcatttt ataacaaaga
     2641 aggggtaggg gacactctac taattgaaac aggcgaagta acgtttgaaa atcgtgaatg
     2701 ggaacgccgc ggtgatgtag cgcgaatttt tgatcgtgaa acaaaagagt tggcgggata
     2761 taacatcttt aatagctcca actattttaa tattactgca aatggtaagg tggatttgac
     2821 ggaggaatta gtagcgcaaa tgaatcaagt aattgaaaaa gctggattcg aaccggaaat
     2881 cgtggctgat ttatctccta aattcgtcgt cggttatgtg gaatcgaaag aaaaacatcc
     2941 taatgcagat aaattaaatg tatgtaaaat caatgtaggg gatgaagtat tgcaaattgt
     3001 atgcggtgcc ccgaacattg acgctggtca aaaagtagtt gttgcaaaaa tcggtgcggt
     3061 tatgccaagt ggtttaatta tcaaaccatc taatttgcga ggagaagatt ctttcggcat
     3121 ggtatgtgct gcgcgtgaac ttgcgattcc tgatgcgcct acggaaaagg ggattatggt
     3181 tctggaggaa tcggctgtgg ttggagaagc ttttcctgtt aatttctaaa taaatgttta
     3241 attttgagcg tctgat
//
LOCUS       DASDXX010000229         3241 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.230, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000229 DASDXX010000000
VERSION     DASDXX010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.230"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(144..1100)
                     /gene="manA"
                     /locus_tag="U0280_002648"
     CDS             complement(144..1100)
                     /gene="manA"
                     /locus_tag="U0280_002648"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEM2272569.1"
                     /translation="MTEALFLNPVFQDRIWGGTKLHDYFGYDIPSDTTGEDWAISAHP
                     NGPSVIKNGEYKGKTLAELWQENPALFGNPKEAVFPLLTKILDANTDLSVQVHPNDEY
                     AKVHENGELGKTECWYIIDCAPGAELIYGHKAASKEEFATWAKNGEWDKLLRKVAIKP
                     GEFYYVPSGTIHALGTGTLVLETQQSSDTTYRVYDYDRKDAEGNLRELHLDKAIDVTT
                     APHVDAKLDIKTETRGGLTETTFVSNDFFSVYKWEVDGAAEFMAKAPYTLVSVLDGEA
                     VLTIDGTKQSIKKGDHFVLPNDVKSWEIDGKMTAIVSNPPVK"
     gene            complement(1180..1911)
                     /locus_tag="U0280_002649"
     CDS             complement(1180..1911)
                     /locus_tag="U0280_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM2272570.1"
                     /translation="MNDVLTLLRNHRSFRKYKKGVEIPEGNLDAIIRAAQAAPSWING
                     QHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSFQIAG
                     EEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAEFLNLPEFVMPVVG
                     LCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERL
                     AKFYDRPYYPNLTEQIKERGFLGGK"
     gene            2063..2293
                     /locus_tag="U0280_002650"
     CDS             2063..2293
                     /locus_tag="U0280_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272571.1"
                     /translation="MRQQQIDFKWLEENFLTANEAATYLGISKQALLSLAKRDVLPFT
                     KKGNMVLFHRMDIELRLENQQSLREKYRPFET"
     gene            2377..3132
                     /locus_tag="U0280_002651"
     CDS             2377..3132
                     /locus_tag="U0280_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent peroxidase"
                     /protein_id="HEM2272572.1"
                     /translation="MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFL
                     SDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTY
                     SYISVVELSNYLASHMAGGEDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWY
                     MLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTE
                     MRFDEASARYAEFGSFFIGNLLPSEQLSKLFTI"
BASE COUNT          963 a          661 c          580 g         1037 t
ORIGIN      
        1 ttatcattaa tacatcaaaa aaaacaaatt ataagtaatc caaaatgata ttttagttgt
       61 catttcataa agcaataaag aagcagaaat cttgtatatt ccattttcaa aatggctttt
      121 atacaatgat ttctgcttat ttgttatttc acaggcggat tcgaaacaat cgccgtcatt
      181 tttccatcaa tttcccaaga ttttacatca ttcggcaata caaaatgatc gcctttttta
      241 atcgattgtt ttgttccatc aatcgtaagt accgcttctc cgtctaaaac actcactaac
      301 gtataaggag ctttagccat gaattcagcc gcgccgtcca cttcccattt gtatacgcta
      361 aagaaatcat tcgatacaaa agtagtttca gtcaacccac cacgtgtttc tgttttaata
      421 tctaacttcg catccacatg cggtgcagtc gtaacgtcaa tagctttatc caaatgaagt
      481 tcgcgcaagt ttccttctgc gtctttacgg tcatagtcat atacacgata agtagtatca
      541 gagctttgtt gtgtttcaag cactaacgtc cccgtgccta acgcatgaat tgtaccactt
      601 ggaacataat aaaattcacc tggtttaatc gccactttac gaagcaattt atcccattcg
      661 ccgttttttg cccaagtagc gaattcttct ttgctagctg ctttgtgtcc atatattaat
      721 tccgcaccag gagcgcagtc aataatatac cagcattctg ttttgccaag ttccccgttt
      781 tcatgcactt tcgcatattc gtcatttgga tgaacttgta cagaaaggtc cgtattcgca
      841 tccagaattt tcgttaatag tgggaaaacg gcttctttcg gattaccaaa aagtgcagga
      901 ttttcttgcc ataattcagc taatgttttg cctttatatt cgccgttttt gattaccgaa
      961 ggaccgttcg gatgagcgga aatcgcccag tcttctccag tagtatcaga cgggatatcg
     1021 taaccaaaat aatcatgtaa tttcgttcca ccccaaattc ggtcttgaaa aacagggttt
     1081 aaaaataatg cttctgtcat tataaaatta cctccattcc agcgtttttg ctgggttttg
     1141 tcaattaaaa gtatatacta ataatggcga agatgctagt tatttcccgc ctaaaaagcc
     1201 tctttctttt atttgttctg ttaaatttgg ataataaggt ctgtcataaa atttggctaa
     1261 ccgttcggta taagaaacaa agccttctcg ctctgaaaac ggaataatct cttggtcata
     1321 tgcttctagt aaaggcatga catctgtttg gtacgtctct tcaaaataaa ctgcttcttt
     1381 tggcaaacgt ggttttacag gtgcttcgac atccggaacg ccaatacaaa gtcccacaac
     1441 gggcatgacg aattctggta aatttagaaa ttcagcggtt gccgtaatat ttctgcgcaa
     1501 accaccaata caaatcgtcc cgtaatcaag cgactcagca gctgttaaag cattttgcat
     1561 acaaagtccg atgtctgttg ccgcaaccat tagtaaatct tcttccccgg caatttggaa
     1621 acttttgccg tgcatgtcac tcgctacttt tacgcggtga aaatctgcca caaaacaaag
     1681 aaaaacggaa cattctgcta tgtaaggttg atttccgcaa agttcggcca ttttattttt
     1741 acgttcttga tctttaatcg caataatcga atagtgttga ccattaatcc acgacggggc
     1801 tgcttgagct gctcggataa tcgcatctag atttccttcc ggaatctcaa cccctttttt
     1861 atatttacga aaagagcgat gatttcttag caaagttaat acgtcattca tatttatgcc
     1921 tcctagattt atcatttagt taaagtatag cttgttttta ggcaattgtt aatgtatagc
     1981 ttgtttttag gcaattgtta atgttttctc ttgtatttct gccagatatt ttctacactt
     2041 aaagaaaaag aggtgaaaag atgtgcgcca acaacaaata gattttaaat ggcttgaaga
     2101 aaacttcctg actgcgaatg aagccgcgac ttacttaggc atatctaagc aagcactcct
     2161 ttccttagcc aaacgcgatg tactcccctt tacgaaaaaa ggaaatatgg ttcttttcca
     2221 ccgaatggac attgaacttc ggcttgaaaa ccaacaaagc ttacgtgaaa aataccgtcc
     2281 ttttgaaacg taaatttcac aaacagcgaa acggacgaac tacttcccgt atgttacact
     2341 ttagttagtg atattctaaa caaggagtga tacataatga atgaagcagt aaaaacttta
     2401 gatggatggt tttgtctaca tgattttcgt tcgattgact gggctgcgtg gcgtgaacta
     2461 aatccaggta atcaggaact tatgttaaat gaactcagcc actttttaag cgatatggaa
     2521 attactaaaa atatcggtga aggtgaacat accatttaca gtattcttgg tcaaaaagca
     2581 gatttagtat tcttcacttt gcgtgattcc cttgaagcgc tgaatgaagt cgaaaatcgt
     2641 tttaataaat tagcgattgc cgactacttg ttgccgactt attcctatat atctgtggtg
     2701 gaattaagta actatctagc gtctcacatg gcgggcggcg aagatcctta ccaaaacaaa
     2761 ggtgttcgcg cgagactcta tccagcactc ccacctaaaa agcatatttg tttctaccca
     2821 atgagtaaaa aacgggacgg cgctgataat tggtatatgc ttccaatgga agaacgccaa
     2881 caacttattc gcgaccatgg cttgattggt agaagctatg cgggcaaagt acaacaaatc
     2941 attggtggct ccattggatt tgatgattat gaatggggcg tcactttatt ttccgatgat
     3001 gcactggagt tcaaacgcat cgtaacggaa atgcgctttg atgaagcaag cgctcgatat
     3061 gctgaatttg gttctttctt tattggaaac ctgttaccat ccgagcaact ttctaaatta
     3121 tttactattt aatataagta aaaactggaa ttcaatctaa caaatgactg attttgttag
     3181 ctggattcca gtttttttat ttcactaaac taacaatttt gtaaggatat ctaccgtaaa
     3241 t
//
LOCUS       DASDXX010000230         3202 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.231, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000230 DASDXX010000000
VERSION     DASDXX010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.231"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..929)
                     /locus_tag="U0280_002652"
     CDS             complement(<1..929)
                     /locus_tag="U0280_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HEM2272573.1"
                     /translation="MTALRKINATLDLNRKSWNIERIEAVQGDIDSLMIAVQIVENGK
                     LKDLTDYKPTFAVVLPGTVKYVIDDLHFSNEKMNEGYFEYTFVKEAFSVPGVYDTARF
                     ILQNEDGTELSGMPRFTYYVEKDPLQGKVVAESYISDFERLEQMIHAVELEIAELHDE
                     VTSESVRLDSEIAALDEKINTETSKLQSEADDLQQQFDNLNPAQFAQKTVLDEHVNDA
                     DIHVTATDKTNWNAKETVEGAQAKADKALADAKAFFELSSSVQSVTLTPKNGFVASQP
                     LIARYIKFGNRFLVIVSGIVGKGTGSGTGICAT"
     gene            complement(926..3052)
                     /locus_tag="U0280_002653"
     CDS             complement(926..3052)
                     /locus_tag="U0280_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2272574.1"
                     /translation="MIPILYESKNTDFENNGLGLLKDIITATVDETLNGPCELTIEYP
                     VTARLFDKISDESIFKVKSNEVQNFQLFRAYNIVRDEFTSSIIVKAKHITNDATSNFV
                     EDFTVENITPGAALNKLFSSTAYPSKFSGTSDIATLSSTSIQRKNPLEIIAGVEGSLL
                     DTWGGELVRDNFSIKLLKRRGRDKVASIRYRKNLTGLETDVDTENVITRIYPFANKQD
                     SNGNEQTIVLPEKYIDSEHINAYSNVKILAVDYSSDDTVTDVTTLRNVAGKYFMNNKT
                     DIPEMNIKVSFEPLSEMTGYEKYKNLEAVELGDTVTVYHPDLNVNITAKAVRTKYNVI
                     TEKYEEIELGSIKADFTDTLKSDISKIIDEVPTQDWMQNELKAIGDSIQGANGGNIYT
                     FPTFKPSTMYFMDTDNVNTAKKVMVMNREGIAFYQNGITGIPKTAWGIDGKFVADWIG
                     TGTLRAIDIEGVSITGSSGFFDTLYSSFLPGLPAPQYKEELKMGGGVGFHLTAKSVTK
                     PYPALQMRMNTNGDLGLAIEAVNENTGAIDADRVVRLSPFAGIETPLIQSDGWCCIGA
                     NSDGKTASIDRHTWISGGGPQLRYVPHRASNFETASSEEYKKNIRKVKKTAFGKTAKQ
                     VINETDVFTYSHIADETNEKKIGFIAEQASDSLTTADGKAIDLYNSVAWLYQYAKENE
                     EEKEALKAEVKELKNLVNKLVNEVSK"
     gene            complement(3052..>3202)
                     /locus_tag="U0280_002654"
     CDS             complement(3052..>3202)
                     /locus_tag="U0280_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2272575.1"
                     /translation="VYKTVNDVIATADNKMFTPDFPVLNVGENYFDWIGNIEKIEVNP
                     YWRYV"
BASE COUNT          893 a          675 c          487 g         1147 t
ORIGIN      
        1 aacgttgcgc atatgccagt tccacttcca gtccctttgc ctacaattcc gctaacaatg
       61 actagaaacc gattgccaaa cttaatgtat cgagctatta aaggctgact tgcaacaaat
      121 ccgttcttcg gcgtcaaagt aacactttgt acagagctag atagttcaaa aaaagctttt
      181 gcatcagcaa gtgctttatc tgctttagcc tgcgcgcctt ctactgtttc ttttgcattc
      241 cagtttgttt tatcagtcgc tgtgacatga atatcagcat cattaacatg ttcatccaaa
      301 acagtttttt gtgcgaattg agcgggattt aagttatcaa actgctgttg caagtcatct
      361 gcttcacttt gaagcttact agtttctgta ttgatttttt catcaagtgc cgcaatttca
      421 ctatctaaac gcacgctttc acttgtcact tcatcatgta gttcagcaat ttctaattct
      481 acagcatgta tcatttgttc taatctctcg aaatcactta tatagctttc tgctactact
      541 tttccttgca acgggtcttt ttcaacataa tacgtaaaac gaggcatacc agatagctct
      601 gtcccatctt cattttgcaa aataaaacgg gctgtatcat acactcccgg aacagaaaat
      661 gcttctttta caaatgtgta ttcgaagtaa ccttcattca ttttttcgtt actaaaatgt
      721 aaatcgtcaa ttacatattt gaccgtgccc ggtaaaacta ccgcgaacgt tggcttataa
      781 tctgttaagt ctttcaattt accgttttcg acaatttgaa ctgctatcat cagagaatca
      841 atatcacctt gaactgcttc aatgcgctca atattccaag attttctatt taagtctaat
      901 gttgcgttta tttttcttaa agcagtcatt tactcacctc gtttactaat ttatttacta
      961 agtttttcaa ctcttttacc tctgctttta atgcttcttt ttcttcttcg ttttcttttg
     1021 cgtattgata tagccacgca acagaattat ataagtcaat tgcttttccg tcggctgtag
     1081 tcagcgaatc agaagcttgt tcagctataa atccgatttt cttttcgttt gtttcatcag
     1141 caatatgcga ataagtgaaa acatctgttt cgtttatgac ttgcttagct gttttaccaa
     1201 acgcagtttt ctttacttta cgtatatttt tcttatattc ttctgaacta gcagtctcaa
     1261 aattactagc tcgatgcggc acataacgta attgtggacc gccaccggaa atccaagtat
     1321 ggcgatcaat agaagcggtt ttaccatcag aattagcacc aatacagcac caaccgtcgc
     1381 tttgaattaa aggtgtttca attcccgcaa aaggggacag tctaacaacc ctatcagcat
     1441 ctatcgcacc cgtattttca ttcacagctt caatagcaag ccctaaatct ccattcgtgt
     1501 tcattctcat ttgcagagcg ggataaggtt ttgtcaccga ttttgcggtt aaatggaaac
     1561 caacacctcc gcccattttc agttcttctt tatattgagg tgctgggaga cctggtaaaa
     1621 aacttgaata caatgtgtca aaaaaacctg atgagcctgt tatgcttacc ccttcaatat
     1681 cgatagccct taaggtccct gttccaatcc aatcggcaac aaatttacca tctattcccc
     1741 atgcggtttt aggaatgccg gttatcccat tttgataaaa cgctatacct tctctgttca
     1801 taaccatcac tttttttgca gtattcacat tgtcagtgtc cataaaatac atggtcgaag
     1861 gtttaaatgt tgggaaagta taaatgttac ctccgtttgc gccttggata ctatctccta
     1921 ttgcttttaa ttcattctgc atccaatcct gagtcggaac ttcgtcgata attttgctta
     1981 tatctgattt taacgtgtct gtaaaatcag ctttaatgct gccaagttct atttcttcat
     2041 atttttcagt aataacatta tattttgttc gaacagcttt tgcagttata tttacgttta
     2101 aatctggatg ataaactgtg actgtgtctc ctaactcgac tgcttccaaa tttttatatt
     2161 tttcataacc tgtcatttca gaaagtggct caaaagatac tttgatattc atttctggta
     2221 tatctgtctt attattcata aaatatttac ccgctacatt tcgaagtgtt gttacatctg
     2281 tcactgtgtc atcagatgag taatcaactg ccaagatttt tacattcgaa tatgcattaa
     2341 tatgttcact atctatatat ttttcaggca atacaatcgt ttgctcatta ccatttgaat
     2401 cttgcttatt cgcgaatgga taaattcgag taattacatt ttccgtatct acatcagttt
     2461 ctaatccagt taaatttttc cggtatctaa tagatgcaac tttatctctc ccacgtcgtt
     2521 ttaatagttt tatactaaag ttatcacgaa ctaactcccc tccccatgta tccaagagag
     2581 agccttcgac tcccgcaata atttcaaggg gattttttcg ttgtatacta gtacttgata
     2641 acgtagcgat gtctgacgtt ccagaaaatt tagaaggata agcagtagaa gaaaacaatt
     2701 tatttaatgc ggcacctggt gtaatatttt cgaccgtgaa atcttctaca aaatttgaag
     2761 tagcatcatt tgtaatatgt ttagccttca ctataatgga gctggtaaat tcgtcacgca
     2821 ctatattgta tgctcggaaa agctgaaaat tttgcacttc atttgacttt actttgaaaa
     2881 tagactcgtc acttatttta tcgaatagcc ttgctgttac aggatattca attgtcaact
     2941 cacacggtcc attcaatgtt tcgtcaactg ttgcagtgat aatgtctttt agtagaccta
     3001 atccattatt ttcaaaatct gtattttttg actcatataa aattggtatc attacacata
     3061 cctccaataa ggattgactt cgattttctc tatatttcca atccaatcga aataattttc
     3121 tcctacatta agcaccggaa aatcaggagt aaacatttta ttgtcagctg tggcaataac
     3181 atcattcact gtcttgtaca cc
//
LOCUS       DASDXX010000231         3192 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.232, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000231 DASDXX010000000
VERSION     DASDXX010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.232"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            231..>3192
                     /locus_tag="U0280_002655"
     CDS             231..>3192
                     /locus_tag="U0280_002655"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HEM2272576.1"
                     /translation="MNRIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHR
                     YKSDEAYLVGAGKKPIDAYLDIENIIEIAKESGADAIHPGYGFLSENIEFARRCEQEG
                     IIFVGPKSKHLDMFGDKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMI
                     KASLGGGGRGMRVVESKEHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILG
                     DTHGNIVHLFERDCSIQRRHQKVVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGT
                     VEFLVEGDDFYFIEVNPRVQVEHTITEMITGIDIVQSQLFIADGYALHDQLVAIPKQE
                     DIHIHGSAIQSRITTEDPLNNFMPDTGRVDTYRSTGGFGVRLDAGNGFQGTVVTPFYD
                     SLLVKLCTWGMTFEQATRKMRRNLIEFRIRGVKTNIPFLLNVVRHPDFASGNYNTSFI
                     DTTPELFKFPHIRDRGTKTLRYIGNVTVNGFPGIKHRDKPVYAEPRLPKIPYGSQISP
                     GTKQILDAKGPEGVVDWVKKQEEVLLTDTTLRDAHQSLLATRVRSKDIFQIADAMAHL
                     LPNMFSFEMWGGATFDVAYRFLNEDPWVRLETLRKQIPNVMFQMLLRGANAVGYKNYP
                     DNVIREFVKQSAQSGVDVFRVFDSLNWIKGMEVSIDAVREAGKIVEAAICYTGDIDDD
                     TRTKYTIDYYKDMAKELVAQGTHILGIKDMAGLLKPQAAYRLIGELKDTVDVPIHLHT
                     HDTSGNGIYTYAAAVSAGVDIVDVASSAMSGATSQPSMTGLYYGLVNGNRQTNLDAQN
                     SQIINHYWEDVRHYYKDFDNALNSPQTEVYIHEMPGGQYTNLQQQAIAVGLGDRWDEV
                     KEMYTVVNQMFGDIVKVTPSSKVVGDLALFMVQNELSEEDVYEKGDTIDFPDSVIEFF
                     MGEIGQPYGGFPEKLQKLVLKGRTPLTDRPGALMEPVNFVEVKAELKEKMGYEPTEKD
                     VISYILYPKVFLDYQ"
BASE COUNT         1035 a          572 c          682 g          903 t
ORIGIN      
        1 ccgcatgttt ttggcgtttt atagccagtt tattcgtgtt ttcgatattg ttttaaatat
       61 ttagaaagaa aataatttac atctgatggt atttaatact ataattgaag ttatataccg
      121 ttttacagcc taaaaaaagg ggattatcat ataagtgtac ataatcattt caaccgttgg
      181 aggctatgta taaagtatag aacagatcag tgttggttag gaggaaaaaa atgaatcgaa
      241 ttaaaaaagt attagtagca aaccgcggag aaattgctat ccgtgttatg cgtgcgtgta
      301 ctgaactcaa aatcaaaaca gtggctattt attcacaaga agataccgga agttttcacc
      361 ggtataaatc agatgaagct tatctggttg gagcagggaa aaagcctatt gatgcgtatc
      421 tagatatcga aaacataata gagattgcta aagaatctgg tgcagacgcg attcatccgg
      481 gatatggttt cttgtccgaa aacattgaat ttgctcgtcg ttgtgagcaa gaaggcatta
      541 ttttcgttgg tcctaaatca aaacacctag atatgtttgg tgataaaatc aaagcaaaag
      601 aacaagctct attagctgat attccagtaa ttccgggaag taatggaccc gtggctggta
      661 ttaaagaagt agaagaattt ggtgagaaaa acggttaccc attaatgatt aaagcttctc
      721 ttggaggcgg cggtcgtggt atgcgtgtcg tagaatcaaa agaacatgtc aaagaaagct
      781 ttgaacgtgc atcctcagaa gcaaaagcgg catttgggaa cgatgaagta tacgtagaaa
      841 aatgcgtgat gaatccgaaa catatcgaag tacaaattct tggtgacacc catggcaaca
      901 tcgttcattt atttgaacgt gattgttcta tccaacgtcg tcatcaaaaa gtagtagagg
      961 tagcgccatg taatgcgatt acttctgaac tacgtaaccg tatctgtgat gctgcagtaa
     1021 aattaatgaa aaatgttgat tacattaatg ctggaacagt tgaattttta gtggaaggcg
     1081 atgatttcta ctttatcgaa gtaaatcctc gtgtccaagt ggagcataca attactgaaa
     1141 tgattacagg gattgatatt gttcaatcac aactattcat tgcagatggt tacgcgcttc
     1201 acgaccaact agtagctatt cctaagcaag aggatatcca tattcacggt tctgctattc
     1261 aaagccgtat tacaacggaa gatccactta ataactttat gccagatact ggtcgagtag
     1321 atacgtatcg ctctacaggt gggtttggag ttcggttgga tgctggtaac ggcttccaag
     1381 gaacagtagt aacaccattt tatgattcct tacttgtaaa attatgtact tggggaatga
     1441 cattcgaaca agcaacgcgc aaaatgcgtc gtaacttaat tgaattccgt atccgtggtg
     1501 tcaaaacgaa cattcctttc ttattaaatg ttgttcgtca tccggatttt gcaagtggta
     1561 attataatac aagctttatt gatacaacac cggaactatt taaattccca catattcgcg
     1621 accgtggtac aaaaacgttg cgttatattg gtaatgtaac ggttaatggt ttcccaggaa
     1681 ttaagcaccg tgataaacct gtatatgcag aaccacgctt gccaaaaatt ccgtatggtt
     1741 cgcaaatctc tccaggtaca aaacaaattt tggatgcaaa aggtccagaa ggcgttgtag
     1801 actgggtgaa aaaacaagaa gaagtgctct taacagacac tacacttcgg gatgcgcacc
     1861 aatctttact tgcaacacgt gttcgctcga aagacatttt ccaaatagca gatgcgatgg
     1921 ctcatttatt accaaacatg ttttcctttg aaatgtgggg tggcgcgact tttgacgtgg
     1981 catatcgttt cctaaatgaa gatccttggg tgcgcctaga gacacttaga aaacaaattc
     2041 caaacgtgat gttccaaatg ttacttcgcg gagctaatgc agttgggtat aaaaactatc
     2101 ctgacaatgt tatccgtgaa ttcgttaagc aatcagcaca atccggtgtg gatgtattcc
     2161 gcgtgtttga cagcttaaac tggatcaaag gcatggaagt gtccattgat gctgttcgtg
     2221 aagcagggaa gatcgtagag gctgctatct gctatacagg agatatcgat gatgacacaa
     2281 gaacgaaata taccatagat tactataaag atatggcgaa agagctcgtt gctcaaggca
     2341 cgcatatcct aggaatcaaa gatatggctg ggcttttaaa accacaagcg gcataccgtt
     2401 tgattggcga attaaaagat acagtagatg ttccaatcca ccttcacacg catgacacaa
     2461 gcggcaacgg tatttatact tacgcagcag ctgtcagtgc tggcgttgac attgtggacg
     2521 tggcatcaag cgcaatgagt ggggctacaa gccaaccaag tatgactggt ctttattacg
     2581 gattagtgaa tggtaatcgt caaacgaatt tagacgctca aaattcccaa atcattaatc
     2641 attactggga agatgttcgt cactattaca aagactttga caatgcactt aattcacctc
     2701 aaacagaagt atacattcat gaaatgccag gtggtcaata tactaacctt caacaacaag
     2761 ccattgcagt tggacttggc gatcgttggg acgaagtgaa agaaatgtat acagtggtta
     2821 atcaaatgtt tggtgatatc gttaaagtaa caccttcttc caaagttgtt ggagacttag
     2881 cactatttat ggttcaaaat gaattatccg aagaagatgt atacgaaaaa ggcgatacca
     2941 ttgatttccc agattccgtt atcgaattct ttatggggga aattggtcaa ccatacggcg
     3001 gcttcccaga aaaacttcaa aaactagtac tcaaaggacg tacaccactt acagatcgtc
     3061 caggcgcttt aatggaacca gttaactttg ttgaagtcaa agcagaatta aaagaaaaaa
     3121 tgggttatga accaactgaa aaagatgtca tttcctatat tttgtatcca aaagtgttcc
     3181 tagattatca ag
//
LOCUS       DASDXX010000232         3182 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.233, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000232 DASDXX010000000
VERSION     DASDXX010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.233"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            128..961
                     /locus_tag="U0280_002656"
     CDS             128..961
                     /locus_tag="U0280_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2272577.1"
                     /translation="MLKINTTTFNPQILYIANCYTNEVRVGENHHHDFLEISIICEGN
                     VIYDIEGERVKLGKGDMLIFNPGVNHYDITEPGMTNAQLHIGFRNFALEGYTRNTFPF
                     KKAFLRKKEEESAILSISKQIIEEKDAEKPGYDLILKAFVMQLIIHVLREATPEQLEN
                     NGVKLSTDEQQKQILVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKEETGES
                     PINYLIKIRLTRAEELLKNKDVTVKQAANMVGYNDAYYFSKLFKKYYGFPPSENWRKS
                     S"
     gene            996..2111
                     /locus_tag="U0280_002657"
     CDS             996..2111
                     /locus_tag="U0280_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272578.1"
                     /translation="MEYKKALAFIKSNSILEQEEGTEVIFKQAQETVRGNLDPFLLKD
                     LKQHLGGTNDAIKEAPQEIQMPDFSNLEIATAAALQMRATMGSPNIDLSNGVTTEYRV
                     VEGDYGDIPVRIYRHEEATKPVPAFIFYHGGGFVGGTPAVVENFCKGIAEKLPAVVIN
                     VDYHLAPEFPAPAAPKDCYRALEWVVEQSDELGIDASKIGVSGDSAGGTLAAAVSYMD
                     YEAETNYVGFQALLYPALTLVDEDNDKYQWDISKFGASEETLPLVAPGIIGMNSSGEL
                     LRTAYVRDENPASPIYSPLSAVDKSIYPPTLIASAEFDALRAFADIFAKELRASGVQT
                     KVIVYQGMCHAFIDKYGIFPQAEDVADEIVQMMKEIF"
     gene            2218..2925
                     /locus_tag="U0280_002658"
     CDS             2218..2925
                     /locus_tag="U0280_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEM2272579.1"
                     /translation="MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEA
                     VLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHR
                     ITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVM
                     SYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLES
                     HGVSIFQGYLVNKPFPV"
     gene            complement(2895..>3182)
                     /locus_tag="U0280_002659"
     CDS             complement(2895..>3182)
                     /locus_tag="U0280_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEM2272580.1"
                     /translation="NINQAPIVKVTRILVEIIELLHLHQTEGAIELPVYVTQTFLADY
                     CRSSRARVTEVLEELRESGLLLSKKPITISSHENLLNQIDSFQTGNGLLTR"
BASE COUNT         1049 a          565 c          668 g          900 t
ORIGIN      
        1 aatattcata tatccattta gtttacactc ctaatttcga aaaagaatgg tttatattcg
       61 ctgtaagcat ggacaatgtt atataattaa aagataaatg taagcgttat aacgaggagg
      121 tgaagtgatg ctgaaaataa atacgaccac atttaatccg caaattttgt atatcgcgaa
      181 ttgttatacg aatgaggtgc gcgtaggtga aaatcaccat catgattttt tggagatctc
      241 gattatttgt gagggaaacg ttatttatga tattgaaggc gagcgagtca agctaggaaa
      301 aggcgatatg ctgattttta atcctggtgt gaatcattac gatataaccg aaccaggtat
      361 gacgaatgcg caactccata taggttttcg gaactttgca ctggaaggat acacgcgaaa
      421 tacgttcccg tttaaaaagg cctttttacg aaaaaaagaa gaagaatctg ccattttatc
      481 tatttctaaa caaattatag aagaaaaaga cgcagaaaaa ccaggatatg acttgatttt
      541 aaaggctttc gtcatgcaat taattatcca tgttttacgc gaagccaccc cagaacaact
      601 tgaaaataac ggcgtcaaat tatctaccga cgagcagcaa aaacagatac ttgtaaacga
      661 aattattcat tatatggaaa aacaccatac agaagacgtc tcgctctcaa cgctttcgca
      721 aacgatgtac attagccccg cctatatctc caaagtattt aaagaagaaa ccggggaatc
      781 accaattaac tacttaatca aaattcgtct tactcgtgca gaagaattac tcaagaataa
      841 agacgttacc gtaaaacagg ccgcaaatat ggtcggatat aatgatgctt attattttag
      901 caagcttttc aagaaatatt acgggtttcc accatcagaa aactggcgca aatcgagtta
      961 gaattccaaa ataagacaga gagaaggaag actggatgga atataaaaaa gctttagcgt
     1021 ttataaaatc aaatagcatt ctagaacaag aagaaggaac agaagttatt tttaaacagg
     1081 cacaagaaac agttcgaggg aatttggatc cttttttatt aaaagacctg aaacaacatc
     1141 ttggcggtac gaatgatgcg ataaaagaag cgccgcaaga aatccaaatg ccagattttt
     1201 ctaatttgga aatagcaacg gcagctgcac tacaaatgcg agcaacgatg ggaagtccga
     1261 atattgattt atcaaacggt gtaactacgg aatatcgggt tgttgaaggg gactatggcg
     1321 atattccggt acgaatttat cgtcacgaag aagcgaccaa accagttccc gcattcattt
     1381 tttatcatgg tggtggcttt gttggtggaa cgccggctgt tgtggagaac ttttgtaaag
     1441 gtattgcgga aaagttaccg gcagttgtta ttaatgtgga ctatcattta gctcccgaat
     1501 tcccggcacc agcagctcca aaagattgtt acagggcgct tgaatgggta gtggaacaaa
     1561 gcgacgaact cggtatcgac gcttcgaaaa taggtgtttc tggagatagc gcgggtggaa
     1621 ctttagcagc agcggtgagc tatatggatt atgaagcaga gacgaattat gtaggatttc
     1681 aagctttact ttacccagcg ctaacgttag tagatgaaga taatgataag taccagtggg
     1741 atatttccaa gtttggggca tcagaagaga cacttccgct cgttgcgcca ggtatcattg
     1801 gaatgaacag ctctggcgaa ttactgcgga cggcctatgt tagagacgaa aatcccgcat
     1861 cgccaattta ttctccacta tcggctgtag ataaaagtat ttatccgcct acacttatag
     1921 ccagtgcgga gtttgatgcg ttacgagctt ttgcagatat ttttgctaaa gaactgcgag
     1981 caagtggtgt gcaaacaaaa gtaatcgttt accaaggaat gtgtcatgct ttcattgata
     2041 aatacgggat tttccctcaa gcggaagacg tggcagatga aattgttcaa atgatgaaag
     2101 aaatatttta aagaataatt tgcaggcatt ttccggaatg cctgtttgtt tttggactaa
     2161 attttgcgat tagtactaaa aatgtattag aatagagaag agaaatgaga aaggatgatg
     2221 ggactcatga aatttcagct ttttattcaa ccaaaattag atgttcttca gggaaatatt
     2281 gtcgaatatg aaatactttt acgtgatgat agtgcagttc ctagatttcc tctatcagaa
     2341 ttagaagctg tactcgcgga cgaagaactg tacttagctt tttccgagtg gtttagcgag
     2401 gccttcttag acgttttaaa gaaatatcca aatgatcgat ttgccataaa tattgcgcca
     2461 caacagcttt tttacataga aacactccac tggctagaca aattaaaaag cgagagccat
     2521 cgtataactg tagaaatgac cgaagatatt ttcgatgtcc ccggtcataa acgccacctt
     2581 aatgcgaacg ataaaaacgc atttattcta aataaaatta aagtgattca cggtctcggc
     2641 taccatatcg ccatagacga tgttagttgc ggattgaaca gcctagagcg agtgatgagc
     2701 tacctacctt acataataga gattaaattc tccctcattc atttcaaaaa tataccatta
     2761 gaagatttgc tactatttat taaagcttgg gcaaattttg ctcagaaaaa taagctcgat
     2821 tttgttgttg agggaattga aacgaaagaa accatgactc tactagaaag tcatggcgtc
     2881 tcgatttttc aaggttatct cgttaataag ccgtttccgg tttgaaaact atctatttga
     2941 ttgagtagat tctcgtgcga gctaatggtg atgggctttt tggaaagcag tagtccgctt
     3001 tcccgtagct cttctaacac ttcagttact ctagctcgac tcgaacgaca ataatcagct
     3061 aagaaagttt gcgtgacata gactggaagc tcaattgccc cctctgtttg atgcaaatga
     3121 agtaactcaa taatttccac caaaatacgc gttactttga ctatgggtgc ttgattaata
     3181 tt
//
LOCUS       DASDXX010000233         3155 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.234, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000233 DASDXX010000000
VERSION     DASDXX010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3155
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.234"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(47..1147)
                     /gene="uvrC"
                     /locus_tag="U0280_002660"
     CDS             complement(47..1147)
                     /gene="uvrC"
                     /locus_tag="U0280_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HEM2272581.1"
                     /translation="MDDKLQKKLTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSY
                     FHSKQIGKTARLVRQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYI
                     KITNEKNPHIEVVFEVKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDGKPGRPCL
                     YYHLGLCLGPCQAEIDPVVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERA
                     AELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNHLSVFVFFVRNGAINGSKWHV
                     FQIEKSLQEDLAKFLNQFYKDPNNIRPKELLIAEKIDKSLLNEQLRKACLFPQKGGKK
                     KQVDLAIENAKSAYIAYAKMKEYDFEIQLNNH"
     gene            complement(1252..2355)
                     /locus_tag="U0280_002661"
     CDS             complement(1252..2355)
                     /locus_tag="U0280_002661"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM2272582.1"
                     /translation="MNQLAPFYADHVGSILRTKGIKDAREKFQSGEITVSELRKIENT
                     EIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGGIQFSKVQTKSHS
                     VKITGPIDFTTHPFIEDFIFLKEAVGDKHVAKQTIPSPAMLHYRGDIEYQPYLDDAEK
                     FAKDLAVAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPDTLQETYK
                     NLINDAIKYKPADMVITMHICRGNFRSTWIAEGGYGPVAETLFGKLNIDGFFLEYDNE
                     RSGDFAPLKNVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQC
                     GFASTEEGNILTEEEQWDKLRYVVRLAKDIWGE"
     regulatory      complement(2450..2547)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(2612..2989)
                     /locus_tag="U0280_002662"
     CDS             complement(2612..2989)
                     /locus_tag="U0280_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEM2272583.1"
                     /translation="MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELA
                     DGTTKQAEQAFKNIAAVLAEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPA
                     RSAFQVAKLPLDAAIEIEVIAEA"
     gene            3068..>3155
                     /locus_tag="U0280_002663"
     CDS             3068..>3155
                     /locus_tag="U0280_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM2272584.1"
                     /translation="MILTIYLIAITLVSFLLFAVDKRKAIKHA"
BASE COUNT          860 a          655 c          534 g         1106 t
ORIGIN      
        1 ttttcaacac aacaaagaga agaagctaat cgttaaaaat tagcttctaa tgattgttta
       61 gttgtatttc aaaatcatat tctttcattt ttgcgtatgc aatataagca cttttcgcat
      121 tttcgatagc caggtctact tgtttcttct taccgccttt ttgtggaaat aaacaagctt
      181 ttctaagctg ctcattcagt aagctcttat ctattttttc agcgattaac aactcttttg
      241 gtcgaatatt gttaggatct ttataaaatt gattgagaaa tttggctaaa tcttcttgaa
      301 gggatttttc aatttggaaa acgtgccatt tacttccatt aattgcgcca tttcgaacga
      361 agaaaacgaa gacacttaaa tggttatctt gttcatagca accaatgata tcccgatttt
      421 ttaggccagg aaaaataata tgttgctttt cgattgtctc attaatagcg tgtattttat
      481 ctcgaagttc tgccgccctt tcgaattcaa gattttcggt tgcagttaac atgtccccca
      541 gtagtttatc cttcacattt ttcacgtcgc cttcaagaaa acgactaatt ttatggatct
      601 gttttttata aactaccgga tcaatttcgg cttggcatgg acctaagcac aatccaagat
      661 ggtagtacaa acatggtcgt cctggcttac cgtcacatcg acaaagtgga aacaattttt
      721 caattaggtc caccgtttgt cttgcggaaa aacgacctgg ataaggacca aaataatgcg
      781 cgccgtctcg ctttacttca aacacaactt cgatatgcgg atttttttcg ttcgtaattt
      841 tgatatatgg gtagctcgtt ccttctttta gctggatatt aaaaggtggc tggtattttt
      901 gaattaagat catttcgagt agtaaagctt ctttttcgga ggttgtaata attaattcta
      961 aatctcgaat ttgcctaaca agtcttgcag ttttcccaat ttgtttgcta tgaaaataag
     1021 actttacacg gtttttcaaa catttagatt taccaatata aagaatttca ttattttcat
     1081 ctctataaat ataacaacct ggtgattcag gtaataaggt caatttcttt tgtaatttat
     1141 cgtccaaagg gctccccctc cttctagaac atctattcta tccctagtca tcctttttgt
     1201 aaagacacaa aaagaactag cacaaactct tcggctagtt ctcctcattt attattcgcc
     1261 ccagatatct ttcgcaagcc ggacaacata tcgcaattta tcccactgct cttcttccgt
     1321 caaaatattg ccttcttctg tcgaggcgaa accgcattgc gggcttaagc gcaactggct
     1381 tagaggcaca atttcactcg cttcttcaat ccgtgcttta atggctgcct cgtcctctaa
     1441 ttcacctgtt ttggatgtaa ttaagcctag aacgattttc aagtctggac gggtgacatt
     1501 ttttagtggc gcaaaatctc cagaacgttc attatcatac tccaaaaaga aaccatcgat
     1561 atttagtttg ccaaataacg tttctgcaac ggggccatag ccgccctctg caatccaagt
     1621 ggagcggaaa ttcccacgac aaatgtgcat cgtaatgacc atatcagctg gtttatattt
     1681 gatagcatca ttgataagat ttttatatgt ttcttgtaaa gtatctgggt caaaacctct
     1741 ctggcgaacg acttcacgct gttcatcaga gcataaataa ctccacgacg tatcatctaa
     1801 ttgcaagtac cgacaaccgg catcataaaa tgcttgaatc gctttttgat acgcaacagc
     1861 taaatctttg gcaaacttct ccgcatcatc taaataaggc tgatactcta tatccccacg
     1921 ataatgaagc atcgctgggc ttggaatagt ttgtttcgcg acatgcttgt cacccacagc
     1981 ctctttaaga aaaataaaat cttctataaa tggatgtgtc gtaaagtcaa ttggtccggt
     2041 aatttttacc gaatgtgatt ttgtttggac tttgctgaat tgaatacctc cagccgcatc
     2101 gtacccttct accccgtcca aattttccaa gaagtcaaaa tgccaccacg cacgacgaaa
     2161 ttcgccatct gtgattgatt ttaagcccac ttctttctgt ttttcaacga tatatttaat
     2221 ttctgtattt tcgattttgc gcaactctga gactgttatt tcaccacttt ggaatttctc
     2281 tcgtgcgtcc ttaattccct ttgttcttaa tatacttccc acatgatctg cataaaatgg
     2341 tgctagttga ttcattttct tcgcctcaat tctcattatt tttatgtata aaaaaacttt
     2401 cccttaaaag acagctttta agggaaagag taatttacct gattcgcgtg ccttatctgt
     2461 cagtgttacc tgctggattt ggcaccgtga aacttccggt tgccaaggct tcacggggcc
     2521 agaaccctcc acctttcttg ataagttgct atgtaattgg ttcttattat atcgtttatt
     2581 tcttgtggtt gtcaaattta tttctgaata tttatgcttc tgcgataact tcgatttcaa
     2641 ttgcagcatc aagcggtaat tttgctactt ggaaagcact tctcgcggga aaatcactag
     2701 aaaagaatgt cgcatacact tcattcacgg ccttaaattc atttaaatct ttgaagaaaa
     2761 cagttgcttt aataattttg tccagtccag aaccagcttc tgctaatact gctgctatat
     2821 ttttaaaagc ttgctcggct tgttttgtcg tgccatctgc taattcgccg gtttccgggt
     2881 taataccgag ttgacctgat gtaaaaataa gtccattcac ttttacagct tgcgagtatg
     2941 gtccaagtgc ttttggggct gacgatgttt gaataatttc ttttgccatt ttatccctgc
     3001 tttcttttat ggtatgcttt tattctaatc aataaagttt gttttagcaa tgaaggggga
     3061 tttctaaatg attttaacga tatatttaat cgcgataacg cttgtttctt ttctattatt
     3121 cgctgttgat aaacggaaag caattaaaca cgctt
//
LOCUS       DASDXX010000234         3138 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.235, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000234 DASDXX010000000
VERSION     DASDXX010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.235"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            197..406
                     /locus_tag="U0280_002664"
     CDS             197..406
                     /locus_tag="U0280_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HEM2272585.1"
                     /translation="MIFKVFYQETLTETPVREKTQSLYVEAESEVKVRQLLKDEPFHI
                     EFVEKISDAHLAYEKENPDFALWEK"
     gene            413..2080
                     /locus_tag="U0280_002665"
     CDS             413..2080
                     /locus_tag="U0280_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM2272586.1"
                     /translation="MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPE
                     DELLGIDYVIPDYSYLVKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASA
                     LIRNKLEEHGLLRQTKIYEYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIV
                     HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNI
                     FRDVEGRIIFATFASNIYRLQQVVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPK
                     DTFIDVHQLNKTPAGNVTILCTGSQGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPI
                     PGNTTSVNRTINLLYQAGAEVIHGKVNNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGE
                     FRMQKIHAESAEECGVPEENSFIMANGDVLALTSETAHVAGKIHAASVYIDGSGIGDI
                     GNIVLRDRRILSEEGLVIVVVSIDMKNSRVMAGPDIISRGFIYMRESGNLIGEAQGLL
                     TRHLNKVMEQKTTQWSEIKNEITDTLQPFLYEKTKRRPMILPIIMEV"
     gene            2189..>3138
                     /locus_tag="U0280_002666"
     CDS             2189..>3138
                     /locus_tag="U0280_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM2272587.1"
                     /translation="MTETRAEKKKKTTSTFTKVMKIASVALLGIIFFSITGLAAKYYI
                     TVQNTFSKINVPLESSNKTLSDLEKKKPFSVLLMGSDARPGEKNGRADTIILATANKQ
                     QNAVEMVSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINM
                     EGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQ
                     DRQRDVIIGIANKVISSSGVSNFESIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVD
                     SQELKGEGEMIYSESYGFDLYYFAPDKTDLERIITMFKKS"
BASE COUNT         1051 a          567 c          587 g          933 t
ORIGIN      
        1 gctattttta tacattagtc tgtggtaatt tttctttgtc ttttttatgc ctgattgtca
       61 gtatctcgtg cacccatatc cgcttgctac taagtccaca actgaaagca agccaattat
      121 tactgaataa ttattaggtt ttcgaccaga gaatctattt ttaaaaacta aacttaaaat
      181 ttaaggagag aaaaacatga tttttaaagt attttatcaa gaaacactga cagaaacacc
      241 cgtacgcgaa aaaacacaat ctttatacgt agaagcggaa agcgaagtaa aagtacgcca
      301 acttttaaaa gatgaacctt tccacatcga atttgtcgaa aaaattagtg acgcgcactt
      361 agcttatgaa aaggaaaacc cagacttcgc gctctgggaa aaataagcct atatgaaatt
      421 tgttaaaaat aatgagacag ctgttttcgc ccttggtgga ctaggcgaaa tcggtaaaaa
      481 cacatatggc gtacaatttc aagacgaaat tattctaatt gatgcaggaa tcaagttccc
      541 ggaagacgaa cttcttggta ttgattatgt tattcctgac tacagttacc tagttaaaaa
      601 caaagataag attaaagggc tttttatcac ccatggtcat gaagatcata tcggtggcgt
      661 tccttaccta cttcgcgatc ttaatatccc aatttacgct gggaaacttg cgagtgcact
      721 tatccgcaac aaattagaag aacatggctt gcttcgtcaa accaaaattt atgaatatga
      781 agaagatgac gtttttaaat tcagaaaaac aagtatctct ttcttccgta caacccatag
      841 tattcctgat acgtatggta ttgttgtcaa aactccatct ggtaacatcg ttcatactgg
      901 tgacttcaag tttgatttta ctccagttgg cgaaccagca aacctaacaa aaatggctga
      961 aatcggtaaa gaaggcgttc tttgtttact atctgatagt acaaatgcgg aagtaccaaa
     1021 tttcaccatg agtgagcgtg tcgttggcga aagtattaaa aatattttcc gcgatgtaga
     1081 aggacgaatt attttcgcta ccttcgcatc taatatttac cgtttacaac aagtagttga
     1141 atcctctatc gaaactggcc gtaaaatcgc tgttttcggt cgtagtatgg aatctgctat
     1201 ggaaatcggt aaacaattag gctatattca agcgccaaaa gatacattta ttgatgtgca
     1261 tcaacttaat aaaacacccg ctggaaatgt gactatcctt tgtacaggga gtcaaggtga
     1321 accaatggct gctctttcta gaattgctaa tggtacgcac cgccaaatcc aaattcaacc
     1381 aggtgacacg gtagtcttct cgtcttcccc aatccctggt aatacaacga gtgtaaaccg
     1441 cacaatcaat ttactatatc aagctggtgc agaagttatc catggtaaag taaataatat
     1501 ccatacttct ggtcacggtg gtcaacaaga acaaaaacta atgcttcgtt tgatgaaacc
     1561 taaattcttt atgccaattc atggtgaatt cagaatgcaa aaaatccatg cagagtctgc
     1621 tgaagaatgt ggtgttccag aagaaaatag ctttattatg gcaaatggag atgtactcgc
     1681 attaacaagt gaaacagctc atgttgctgg taaaatccat gcagcaagcg tatatattga
     1741 tggtagcggt attggcgata tcggtaatat tgtccttcgc gatcgtcgta ttctttctga
     1801 agaaggcctc gtaattgttg ttgtatccat tgatatgaaa aattctcgtg tgatggcagg
     1861 acctgatatt atttcacgcg gcttcattta tatgcgtgaa tccggtaatc tcatcggaga
     1921 agcacaaggc ctcctaacgc gacacttaaa taaagtaatg gaacaaaaaa caacgcaatg
     1981 gtctgaaatc aaaaatgaaa ttacagatac tttgcaacct ttcttgtacg aaaaaacaaa
     2041 acgtcgtcca atgattttac caataatcat ggaagtatag ttttcaagac gataaatggt
     2101 ttcaaaatca tttatcgttt ttttgttgat ttctcagaaa gacgatggta tgtttaaaca
     2161 aacaaaatag aaagacgagg aaaattttat gacagaaact agggctgaaa aaaagaaaaa
     2221 aacaacgtcc acttttacta aagttatgaa aattgctagt gttgctcttt taggaattat
     2281 cttcttctct ataacaggat tggcagcgaa gtattacatc accgttcaaa ataccttttc
     2341 aaaaataaat gtccctctag aatcaagtaa taaaacttta agtgatttag aaaagaaaaa
     2401 acctttctca gtgttactca tgggttcaga tgcccgacct ggtgaaaaaa atggtcgcgc
     2461 agatacaatt attcttgcca cagctaataa acaacaaaat gccgtagaaa tggttagtat
     2521 tcctcgtgat acaaaagtag actacggaaa tggtgacatt ggtaagatta atgcctctta
     2581 ctccaacggt ggcccctcag gaacagtttc agcggtcgaa aaacttatgc caggagttcc
     2641 cgtagattat ttcatttcaa tcaatatgga gggctttaaa gacctagttg atgcagttgg
     2701 tggtattact gtttataacg atatcgactt aacagaagta aatagcaaat ttgttaaagg
     2761 taacattact ttaaacggaa cagaagcttt acaatatgtt cgtattcgtc atgaagatcc
     2821 tcgtggtgac tttggtcgtc aagatagaca gcgcgatgtc attattggta ttgcgaataa
     2881 ggttatcagt tcttccggag tttccaattt tgaaagcatt atgaaagccg ttggcgataa
     2941 tttccaaact aatatgactc ttacagatat tacatctatg gctgcaaatt attcttccgt
     3001 acttaaaaac gtcgattccc aagaacttaa aggcgaaggg gaaatgattt atagcgagtc
     3061 ttatggattt gatttatatt acttcgcccc tgataaaaca gatttagagc gaataattac
     3121 tatgtttaaa aagagttt
//
LOCUS       DASDXX010000235         3055 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.236, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000235 DASDXX010000000
VERSION     DASDXX010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3055
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.236"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..678
                     /locus_tag="U0280_002667"
     CDS             <1..678
                     /locus_tag="U0280_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HEM2272588.1"
                     /translation="GFVEELYMAAKNGERRFVVTANPEIVMHARTDKEFEAILGQADY
                     IVPDGIGIIMASEKLGEPLKERVTGYDTMVGLLNKPLSCYFLGAKPEISEVVEAKVRE
                     KFPQAVVCGVHHGYFDVLESEAIAKEILVAQPDVIFVALGSPAQEKWILSQIANFTKG
                     IFIGVGGSFDVLTDSVKRAPKIWIKLRLEWVYRLLSNPSRWRRFFAIPQFMLVIRKER
                     KRLKKGE"
     gene            679..1803
                     /gene="menC"
                     /locus_tag="U0280_002668"
     CDS             679..1803
                     /gene="menC"
                     /locus_tag="U0280_002668"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEM2272589.1"
                     /translation="MYFQEARLIHAELPLIAPFKTSYGELNSKDFYIIELVNEEGIRG
                     YGELEAFPLPDYTEETLGTAISIIKQHLLPILAQKEIRTPEEVNQMFSWIQGNEMAKA
                     AVELAVWDAFAKNEKLSLAKMIGAKKDSITVGVSIGVQHSAEALVQLVSQYMDEGYER
                     VKLKIAPKKDIQFVKAVREKFPNLSLMADANSAYNREDFLLLKELDHFNLEMIEQPFG
                     TKDFVEHAWLQKKLKTRICLDENIRSLDDLKQAHMLGSCQAVNLKLARVGGMSEALKI
                     ARYCSDNNLLVWCGGMLEAGIGRAHNIALAARAEFTFPGDISASNRYFNEDIVSPAFV
                     LNQGKLTVPTGQGVGVALDLDVLQKYTKSTERILLNKGWS"
     gene            1811..2863
                     /locus_tag="U0280_002669"
     CDS             1811..2863
                     /locus_tag="U0280_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM2272590.1"
                     /translation="MLIWSILISFAVGIIMVPIIRKFAFRINAVDTPRERHKHTKTTA
                     TLGGLAIFISFSVGMILAPIDKSGFLPIYFGALIIITTGFIDDIFDLSPKWKMLGQIL
                     AALCVTVWGDITINFINVPFYGQVDFGYFAIPLSIIWIVAIVNALNLIDGLDGLAGGI
                     SIIALMTIAGMALLLKDVFVAPVALILVAAVAAFLIYNFPPASIFMGDTGALFLGYMI
                     AVLSLMGFKNVTFISLLVPLIILGVPLSDTFFAIVRRLKERIPISSADRSHIHHRLMA
                     LGFTEKQTVLLIYCMALLFSMTGFVFSFSTTWGAMLLLLLLIFSIEIIVEFIGLIGED
                     YRPILNLLQKIHRKRK"
     gene            complement(2901..>3055)
                     /locus_tag="U0280_002670"
     CDS             complement(2901..>3055)
                     /locus_tag="U0280_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LytR family transcriptional regulator"
                     /protein_id="HEM2272591.1"
                     /translation="RWWYFYYYKLDESSVQSISNEFADELGIKQPFPGAAPYSDESSN
                     TTSTSN"
BASE COUNT          906 a          439 c          694 g         1016 t
ORIGIN      
        1 ggatttgtgg aggagctata catggccgcg aagaacgggg agcgtcggtt tgttgtaacg
       61 gctaatccag aaattgttat gcatgctcgt actgataagg agttcgaagc aatattaggg
      121 caagctgatt atattgtacc cgatggtatt gggattataa tggcttcaga aaaacttgga
      181 gagcctttaa aggaacgggt tactggttat gacacgatgg ttggtctatt aaataagcca
      241 ctaagttgtt attttttagg agcaaaaccg gaaattagtg aggttgtaga ggccaaagtg
      301 cgggaaaaat ttccacaggc agttgtttgt ggtgttcatc atggttactt tgatgtatta
      361 gaaagtgaag caattgctaa ggaaatactc gtagcacaac cagatgtgat ttttgtcgct
      421 ctaggttcac ctgctcaaga aaaatggatt ttgtctcaga ttgctaattt tactaaaggc
      481 atttttattg gtgtaggtgg aagttttgat gtcttaacag atagtgtaaa gcgcgcgcca
      541 aaaatatgga taaaattaag gttagaatgg gtatacaggc tcctttctaa tccttcaaga
      601 tggagacgtt tttttgcaat acctcaattt atgcttgtta ttagaaaaga gcgcaagcgt
      661 ttgaaaaagg gtgagtaaat gtattttcaa gaagcgagac taattcatgc agaacttcct
      721 cttattgcac catttaaaac aagttatggt gagctaaaca gtaaagattt ttatattatt
      781 gagttagtga atgaggaggg tatacgtggt tatggagagt tggaagcttt tccgttacct
      841 gactatacag aagagacttt gggcactgct atttctatta ttaaacagca tttgttgcca
      901 atccttgcgc agaaagaaat acgaactcct gaagaggtta accagatgtt tagctggatt
      961 caaggaaatg aaatggcgaa agcggctgtg gagcttgctg tttgggatgc ttttgcaaaa
     1021 aatgagaagc tctcattagc taaaatgatt ggcgcaaaga aggactcgat tacggttggc
     1081 gtgagcattg gtgtgcagca tagtgcggaa gcgttagtcc agttagttag tcaatatatg
     1141 gatgaaggct acgaaagagt gaagttgaaa atcgcaccta agaaagatat tcaatttgtt
     1201 aaagctgttc gagaaaaatt tcctaatcta agcttgatgg ctgatgcgaa ttcagcgtat
     1261 aatagagaag atttcttgtt gttaaaagaa ttagatcact ttaatttaga aatgattgag
     1321 caaccatttg gaactaagga ttttgtggag catgcttggt tgcaaaaaaa attaaaaacg
     1381 cgtatttgtt tggacgagaa tattaggtca ttagatgatt tgaaacaggc tcatatgtta
     1441 ggaagttgtc aggcagttaa tttaaaatta gcgcgcgttg gtggtatgtc agaggctctt
     1501 aagatagcga ggtattgtag cgataataat ttgcttgtct ggtgtggcgg catgcttgaa
     1561 gctggtatag gtagggctca caatattgca cttgctgcta gagcggaatt tactttccca
     1621 ggagatattt ctgcatcaaa tcgttatttt aatgaagata ttgtttcgcc agcatttgta
     1681 ttaaatcaag gaaaactcac tgtgccaact ggtcaagggg ttggagttgc tttagattta
     1741 gatgtgctac aaaaatatac taaatcaaca gaaagaattt tgctaaataa aggatggagc
     1801 tgaaaaaata ttgctaatat ggagtatatt gattagcttt gcagttggta tcattatggt
     1861 gccgataatt aggaagtttg ctttccgaat taatgcggtt gatacaccgc gtgaaagaca
     1921 caaacataca aaaactacag ccactttagg tggattagct atttttataa gtttttcggt
     1981 agggatgatc ttagccccaa tagataaatc aggtttcttg ccaatttatt tcggagcatt
     2041 aattattatt acgacaggct ttatagatga tatatttgat ttatcaccaa aatggaaaat
     2101 gttaggacag attttagctg ctctttgcgt aactgtctgg ggagacatta ctattaactt
     2161 tattaacgtc ccattctacg gacaagtaga ttttgggtat tttgcgattc cattatcgat
     2221 tatttggatt gttgcaattg tgaatgcgtt aaacttaatt gatggattag atggtctcgc
     2281 tggtggtatt tctattattg ctttaatgac cattgcaggt atggctttgc ttttgaaaga
     2341 tgtttttgtt gcgccggttg cgttaattct tgtagcagca gttgcggctt tcttgattta
     2401 taatttcccg cctgctagta tttttatggg agacactgga gcgttattcc ttggttatat
     2461 gattgctgtt ttatcactta tgggttttaa aaacgttact ttcatctcat tgttagtacc
     2521 acttattatt ttaggtgtac ctttgtcaga tacttttttt gctattgtaa gaagactaaa
     2581 agagcggata ccgatatctt cagcggatag atctcatatt caccataggc tgatggcgct
     2641 aggatttaca gagaaacaga cggtgttact aatctactgt atggcattac tattctctat
     2701 gacgggcttc gtattttcgt tttccactac ttggggagca atgttattac tgttattatt
     2761 aatttttagt attgagatta ttgttgaatt tattgggtta attggtgagg attaccgacc
     2821 aatcttaaat ttacttcaaa aaatacatcg aaaacgaaaa taaaaagacc aacaactatt
     2881 tattagttgt tggtcttttt ttaattagaa gtgctagttg tgttagaact ttcgtctgaa
     2941 tacggtgctg caccagggaa tggttgttta attccaagtt catcagcaaa ttcattcgaa
     3001 atactttgca cagagctttc atcaagtttg tagtaataga aataccacca gcgag
//
LOCUS       DASDXX010000236         3051 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.237, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000236 DASDXX010000000
VERSION     DASDXX010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.237"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            57..533
                     /locus_tag="U0280_002671"
     CDS             57..533
                     /locus_tag="U0280_002671"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272592.1"
                     /translation="MKKIFLIINLLLAFSFALTACGNDDVKSKNTTEKEESTRKNNEK
                     DKLEKSKKSSKKTNLKISDASVITQVQFYIEKYDKIDNVKWSWNSDKYNITKMPAVKS
                     TEDGKSFNDVYSAHGTYSWNDKKYNYAITVNFPNENSSQLISLKTDMGTNIEIPTE"
     gene            667..1812
                     /locus_tag="U0280_002672"
     CDS             667..1812
                     /locus_tag="U0280_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2272593.1"
                     /translation="MDKRIKSYLNSKNEISYMFRVYAGIDNMTGKRKQTTRRGFKTER
                     EAKMELKRIEMQIFEEGGLKTQKKALKFEEVYSTWLELYTQTVKESTLERTKIFFNHH
                     ILPVFSDKFIDKIDIHFCQQVINAWSKSNPTSYKRLKNLTSRVFKYAISLHLIESDPF
                     AFVVVPRGEMIEKEEKDITFYDKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALA
                     LTWNDVDLNNKRLYVNKTLSRGEHARILVNATKTKAGKRDISIDASTVDVLKKWKSYQ
                     RGNHQILRLDKVQIIFDNEGNYYNPSSTYSWLDNIFKHHTELKKITSHGFRHTHASLL
                     FEAGASLKDVQERLGHADIQTTSNIYTHVTQEKKDSTASLFSDFMLK"
     gene            1892..1981
                     /locus_tag="U0280_002673"
     tRNA            1892..1981
                     /locus_tag="U0280_002673"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1928..1930,aa:Ser,seq:cga)
     gene            complement(2050..2643)
                     /locus_tag="U0280_002674"
     CDS             complement(2050..2643)
                     /locus_tag="U0280_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2272594.1"
                     /translation="MKHHHNHHGEAGFKRKVDYLDRPERSEVLSPEDFLQAMPIGKTA
                     SILDLGAGTGFLTIPAAKFVDNTVFALDLDAKMLELIESKAKEAGLANVETLEASMDD
                     IPLEANSVDVVLASLVLHEADSLADVLREVSRVVKTGGYFASLEFDTKGTDLKGPPME
                     IQISAEKLKEELAGFGFEVVKNWQLDEGMYVSIAEKK"
     gene            complement(2656..>3051)
                     /locus_tag="U0280_002675"
     CDS             complement(2656..>3051)
                     /locus_tag="U0280_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2272595.1"
                     /translation="NYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVK
                     AGFIESVTGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQPHCLIGEV
                     MNKAEQQMEDYLSKQTVGSIVVEIEKHQH"
BASE COUNT         1049 a          584 c          510 g          908 t
ORIGIN      
        1 tgcttgttag gtatttgcac aaatgtgttt atatagaaat taaatggagg aatgaaatga
       61 aaaagatatt tttaataatt aatttattgc ttgcatttag cttcgctttg actgcttgtg
      121 gtaatgatga tgtaaaatca aagaatacta ccgaaaaaga agaaagtact agaaagaaca
      181 atgaaaaaga taaactagaa aaaagcaaga aatccagtaa gaaaacgaat ctaaaaatat
      241 ctgacgctag tgttattact caagttcaat tttatattga gaaatacgat aaaattgaca
      301 atgttaaatg gtcatggaat agcgacaaat ataacattac taaaatgcca gccgtaaagt
      361 ccacagaaga tggtaaatca tttaatgatg tgtacagtgc acacggaact tattcctgga
      421 atgataaaaa atataactat gcgattactg tcaatttccc caatgaaaat agttcacaat
      481 taatttcatt gaaaactgat atgggtacaa atattgaaat accaacagaa tgagtaaaat
      541 aaacaaaaaa cgccctcccc gcaagagata agcgttttca aatacacaca taggagtatg
      601 caaattcatt ttaccataat ttgctttacc cttcaaaaga acatacattc ggtcaggagg
      661 ataaaaatgg ataaacgtat taaatcgtat ttgaattcaa aaaatgaaat tagttatatg
      721 tttcgagttt acgctggcat agataacatg actggaaaac gaaaacagac tacacgtaga
      781 ggatttaaaa cagagagaga agctaaaatg gagctaaagc gcattgaaat gcagatattt
      841 gaagaaggtg gattaaaaac tcaaaaaaag gcgctgaaat ttgaagaagt atattccacg
      901 tggctagaac tttacacaca aacagtcaaa gaaagcacgt tagaacgcac taaaatattt
      961 tttaatcatc acatattgcc agtttttagc gataagttta ttgataaaat agacatacac
     1021 ttctgtcagc aagtcataaa tgcatggtca aaatctaatc cgacgtcata taaacgtttg
     1081 aaaaatttaa cttctcgtgt cttcaaatat gctatttcgt tacatttaat agagagtgat
     1141 ccctttgcgt ttgttgttgt acctcgcgga gaaatgatag aaaaagagga aaaagatatt
     1201 acattctatg acaagtatga attacgttcg tttttagata ctgtcaaaga cgacactttc
     1261 aaatatactt ttttctatct gttagctttc acgggattga gaaaatcaga agcgctagcg
     1321 ctgacatgga acgatgtaga tttaaacaat aaacgtttgt atgtaaacaa aactctctca
     1381 cgtggtgagc atgctcgcat tttagtgaat gctactaaaa caaaagctgg aaagagagac
     1441 ataagtatag atgcatctac agttgacgtg ttaaagaaat ggaaaagtta tcagcgtggt
     1501 aatcatcaaa ttttaagatt agataaagta caaatcatat ttgacaatga aggaaattat
     1561 tataatccca gctctactta ttcgtggtta gataacattt ttaaacatca cactgaatta
     1621 aaaaaaataa cttctcacgg cttccgtcac acacacgctt cacttttatt tgaagctggt
     1681 gcttcgctga aagacgtaca agaacgatta ggacatgcag atatacaaac tacatctaat
     1741 atttatacac atgttacgca agaaaagaaa gattccacag cttctctttt ttctgatttt
     1801 atgctaaaat aaaatctgtt gaaattgatt tgatagtcaa aatgatagtc aaaaaatcat
     1861 aaatactctc aaatcgttga tacgactgca tggagaaata cccaagtccg gctgaagggg
     1921 acagactcga aatctgttag gcggtgtatg ccgcgccggg gttcgaatcc ccgtttctcc
     1981 gtagaaataa aaaggttcac gcttaaaaat agctttgatt gctattttta gacgtgaacc
     2041 tttttgctgt tacttcttct ccgcaatact cacatacatt ccctcatcca actgccaatt
     2101 tttcaccact tcaaacccaa atcccgcaag ttcttccttc aatttctccg cagaaatctg
     2161 aatttccatt ggtgggcctt tcaaatcagt ccctttcgtg tcaaattcca aactagcaaa
     2221 gtagccgcca gtcttcacaa ctctactcac ttcgcgcaaa acatctgcga gcgaatctgc
     2281 ttcatgtaac acgagcgatg cgagcacaac atccacggaa tttgcctcaa gtggaatatc
     2341 atccatgctg gcttctaacg tttctacatt agccaaacct gcttccttcg ctttcgactc
     2401 aattaattcc aacattttcg catctaaatc taatgcaaaa actgtattat caacgaattt
     2461 tgcagctgga attgttaaaa atcctgttcc cgctcctaaa tctaaaatac ttgctgtttt
     2521 tccgattggc attgcctgca aaaaatcctc tggcgacagc acttcactcc gctctggtcg
     2581 atccaaataa tctactttcc gcttaaaacc agcttccccg tgatgattat gatgatgttt
     2641 cattttagca ctcctttaat gttgatgttt ttcaatttct acgacaatac tacctactgt
     2701 ttgtttgctt aaataatctt ccatttgttg ctccgcctta ttcatcactt cgccaatcaa
     2761 gcagtgcggc tggctttcgc tgtggttttt agggtcacaa tggaaaaagg cgcccttccc
     2821 ttcaatcgct tgaatgacat caagaaaact aatactactt gctggttccg ctaacttata
     2881 cccaccattg acgcctgtta ctgactcaat aaagccagct ttcactagca tcgtcaacac
     2941 tttagataga taagttggcg acacattttg cttggttgca agttctttca caccgacaga
     3001 cttttctggt gacaaattag ctaaataaac catcgtatgt agtgcataat t
//
LOCUS       DASDXX010000237         3049 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.238, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000237 DASDXX010000000
VERSION     DASDXX010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3049
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.238"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..125
                     /locus_tag="U0280_002676"
     CDS             <1..125
                     /locus_tag="U0280_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2272596.1"
                     /translation="TTSTPIELIIEKVGFSNKTYFYSLYKKTFNLLPNEVRNKK"
     gene            complement(175..636)
                     /locus_tag="U0280_002677"
     CDS             complement(175..636)
                     /locus_tag="U0280_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEM2272597.1"
                     /translation="MAIYKDSVHEMWEKYRTEYPMISSKFEAWAFGNSNQMANELGGL
                     VMDGIKTGTSSLFYWYDQGGETMPSVGSHVVLLDGNEEAMGIIKLTGVTIMPFNEVPE
                     TFAYLEGEGDRTLEYWREVHTSFFSNECVELGIPFEEDALVVCEEFEVVYK"
     gene            complement(691..1311)
                     /locus_tag="U0280_002678"
     CDS             complement(691..1311)
                     /locus_tag="U0280_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HEM2272598.1"
                     /translation="MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGI
                     GSRLAMVKVIEKEDGIQVAIDYLLDVATKMGAVITIDVEEVGKDVKLQIKGDSLGMLI
                     GKHGQTLNALQYLTQLIANKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTK
                     RAVHLEPMPSFERKIIHAILSENEQIETHSEGRDPYRYIVIKPVRK"
     gene            complement(1308..2171)
                     /gene="yidC"
                     /locus_tag="U0280_002679"
     CDS             complement(1308..2171)
                     /gene="yidC"
                     /locus_tag="U0280_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM2272599.1"
                     /translation="MKKKKRFKQKLLIASLVIGLMAVLSGCGYSTDPITSESTGFWSH
                     YIVFPLSWTITWFSDLFGGSYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIK
                     ELQEKYSSKDNETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE
                     IKTDSFLWMQLGNPDPYYILPVVAALTTFLSSKISMMGQTQQNKSMAMIVYIMPVMIL
                     FMGITLPSALALYWIIGNIFTVFQTLLINNPFKNKREQEALAAAQVAEDRLKKKAANM
                     KASKKGGKKRK"
     gene            complement(2212..2571)
                     /gene="rnpA"
                     /locus_tag="U0280_002680"
     CDS             complement(2212..2571)
                     /gene="rnpA"
                     /locus_tag="U0280_002680"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEM2272600.1"
                     /translation="MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIG
                     LSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLI
                     HVLKVGRVLKQKPNNSK"
     gene            complement(2661..2795)
                     /gene="rpmH"
                     /locus_tag="U0280_002681"
     CDS             complement(2661..2795)
                     /gene="rpmH"
                     /locus_tag="U0280_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003397591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEM2272601.1"
                     /translation="MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA
                     "
BASE COUNT          892 a          620 c          455 g         1082 t
ORIGIN      
        1 aaaccacttc cactccaatt gagttgatta ttgaaaaagt tggctttagt aacaagactt
       61 acttctactc cttatacaaa aaaacattca atctcttacc caatgaagta agaaataaaa
      121 aataagagta ctgcattaat cgcagtactc ttctattgtt tcacgtgaaa cattctattt
      181 ataaacaacc tcaaactctt cacaaaccac tagagcatct tcttcaaatg gaataccgag
      241 ttccacacat tcattactga aaaaggatgt atgtacttct cgccaatatt ctagcgttct
      301 gtcaccttct ccttccaaat aagcaaacgt ttcaggtact tcattaaaag gcataatagt
      361 tacacctgtt aacttgataa tccccattgc ttcttcatta ccatctaaaa gcactacatg
      421 agaaccaaca gacggcatcg tttctccgcc ttgatcatac caataaaaca agctgctcgt
      481 gccggttttt atcccatcca taacaagccc accaagctca ttcgccatct gattagagtt
      541 accaaatgcc catgcctcaa acttacttga aatcatcggg tattctgtcc ggtatttctc
      601 ccacatttca tgcactgaat ccttataaat cgccatttaa gtatcctcct aaaaaaagac
      661 tgaggttcgt taaaacctca gtctaagaat ttatttgcga actggcttaa tcacaatata
      721 acggtaagga tcgcgtcctt cagaatgcgt ttcaatttgt tcattctcgc ttaaaatagc
      781 atgaataatt tttctttcaa atgaaggcat tggttctaaa tgaacagcgc gcttcgtttt
      841 aagagcttta tctgccattt tatttgctaa aattactaac gtttcatgac gtctttcacg
      901 ataatcccct acattaacaa taatattttt gtattggctc gttgttttat tagcaattaa
      961 ttgtgttaag tattgaagtg cattaagggt ttgaccgtgt ttgccaatta gcatacctag
     1021 actgtcacct ttaatttgca acttcacatc tttaccaact tcttctacat cgattgtgat
     1081 tactgcaccc atcttggtag caacatctaa aagataatca atcgctactt ggataccatc
     1141 ttctttttca attactttta ccatagccag tcttgaacca attccgaaaa tacctttttt
     1201 accttcatct agaacttcta cttcgacctt gtcgcgtgtt gtttctaaag tggctaatgc
     1261 attttggata gcttcttcaa cgtttgagcc ttgcgcagtt atatctctca ctttcttttc
     1321 ttacctcctt ttttggaagc cttcatgtta gctgcttttt tcttcaaacg atcttccgca
     1381 acttgagcag cagcaagcgc ctcctgttcg cgtttgtttt taaaaggatt attaattaaa
     1441 agtgtttgga atacggtgaa aatgttaccg ataatccagt atagagcaag ggcagacggt
     1501 agtgtaatac ccataaatag aatcattaca ggcatgatat aaacaatcat tgccattgat
     1561 ttattttgct gtgtttgccc catcatagaa atttttgatg acaagaatgt tgttaatgcc
     1621 gcaacaaccg gtaagatgta atatggatct ggatttccca gttgcatcca taagaatgaa
     1681 tctgttttga tttctgctgt tctactaatc gcttggtaaa aacctagtag aataggcatt
     1741 tggattaata atggtaaaca acccatcatt ggatttacgc tattttcttg atatagacgc
     1801 attgtttctt gttgtagttt ttgttttgtt tcattatctt tagacgagta tttctcttgt
     1861 agttctttga ttttcggttg taaattggtc atggcctttt ggcttttcag ctgtttgatc
     1921 attaaaggca tgataagtag acggattaaa atggtaacaa caataattcc gactgcgtaa
     1981 cttcccccga ataaatcgga aaaccaagta atagtccagg acaatggaaa tacaatatag
     2041 tgactccaaa atccagttga ttctgatgta attggatcag ttgaatagcc acaacccgaa
     2101 agtacagcca ttaatccgat tacaagactt gcgatgagca acttctgttt gaatcgcttt
     2161 ttcttcttca aattgatgta acctccaatt tcgccttttt aaaatttcca ctcactttga
     2221 attgtttggt ttttgcttta aaacacgccc cacttttaaa acatgaatca aacttttctt
     2281 tacctcatga aaatccatat tggccgccgg ttttctggcg atgataatat attcattttc
     2341 aggattgatt tggctttcta attcatggaa tgattgtctt atgtaacgtt taattcgatt
     2401 tcgacagaca gcgtttccaa tttttttact aactgataaa ccaattcgaa aatgattcga
     2461 tccttcttgc tttaaagtat aaacaacaaa ttgacggtta gcaaaagatt ttcctcttcg
     2521 gaatactttt tgaaaatcgt catttttttt aattctatat ttttttttca tacattctcc
     2581 atcttcttac atatcttagt ataaggccgt ttgcctcagc gatttttcaa aaaaaaaacc
     2641 actgagtcgt tttcagtggt ctacgcagat aaaacttttc ttcctttacg acgacgactt
     2701 gctaaaactc tacgtccgtt tttagtactc atacgcgtac ggaaaccatg cacttttttt
     2761 cttttacgtt tacttggttg atatgttctt ttcattaatt acacctccca tgaaagggtc
     2821 caatcgaatt tatctattag acagtcttag atattgtacg tgaactggtc ttttttgtca
     2881 atactattta gacgaatttc tatttagact ccgttcacta tcatatcata tttttataga
     2941 gagaaaaacc atttttcgaa aattattgtg tcaaatagat atatttttct ctcgtagtgt
     3001 ctggaatagt aatttcccga ccagaaacct ctactaaata tttagcaaa
//
LOCUS       DASDXX010000238         3041 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.239, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000238 DASDXX010000000
VERSION     DASDXX010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.239"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            18..698
                     /locus_tag="U0280_002682"
     CDS             18..698
                     /locus_tag="U0280_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272602.1"
                     /translation="MLEKKYQIHLQNHYDATSRQVQKKEIKVLKKHNNLLNGEVFPYQ
                     ICLESTMEYSRFMLWFEKEVQKIVKELWNQHFIIKLTLSQLHFRETILFLEHLKDFSK
                     RITIEFIGEDTPEIKKHFSVQEQEAFFIGKLRMLKKWKFIISKHIEGCSVEQTLAFTP
                     CLHEIKYTMSQQARMEENIIDLHMFIDFWEYWATHKKLKFVVEVKEKDFITKSLMHKK
                     VHVQFENA"
     gene            complement(853..2709)
                     /locus_tag="U0280_002683"
     CDS             complement(853..2709)
                     /locus_tag="U0280_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2272603.1"
                     /translation="MKLSKFFTIIALSATVTSSLPIPMVKAESTTANETKIENQLPKT
                     DLKETPKEKTTNNNLKNQLVQAGTKTYNDYFPDDNLAKAVAEKMNKNVDESVTVEELA
                     KITKLDARSQGIEDSTGIEYLTGLEILYLEDNQLKSIDVSKNLNLKDLACSNNPLVNL
                     DVSKNLALEELTCENNELTQLDVSKNTALEYLYCPRNQLTKLDVSKNSALRYLACDVN
                     QLTSLDVSQNPALTNLGCTKNQLTDLDVSQNPNLSTLVCSDNQLTNLDVSQNQALAYL
                     TCDNNGLKNIDIDQNLALIELSCENNQLTNLDTTQNLALEILYCDDNQLTNLDVRKNV
                     NLLILSCNNNQLTNLAVGETILDVSCNNNQLKDISSLPDYLTAENGEYQAMDQTLVGP
                     IQTTQNNTLVYAVPTDLLDKDGNIVSIIKPENGGVYDAATRTITWENLPDSGEVSYTF
                     ESNDYGVFSGRVTVPYTGKETVSISSDDEISYKEGTTKTEEAFLTDIHASVTPATETI
                     TSNFADVVDLQTPGKYVVTLSVAESDITKDVIVYVTEEPSKDNPVAPVPPKDPDNKVA
                     DNDQNTEKPQVKVDEKTLPKTGDITSLSLSLAGIICLSFGILFFIKRKKKTV"
BASE COUNT          943 a          494 c          516 g         1088 t
ORIGIN      
        1 aaggaagagg cgattctttg ttagagaaaa agtatcaaat ccatttacaa aatcattacg
       61 atgcaacgag tagacaagtg caaaagaaag aaataaaagt cttaaaaaaa cacaataatt
      121 tattaaatgg ggaagttttt ccatatcaaa tttgtttaga aagcacgatg gaatattcaa
      181 gatttatgtt gtggtttgaa aaagaagtcc aaaaaatcgt gaaagaactt tggaatcaac
      241 attttattat caaactaaca ttatcccaat tacatttccg cgaaaccatt ctatttttag
      301 agcatttaaa agattttagt aaacggataa cgattgaatt tatcggtgaa gacacaccag
      361 aaattaaaaa acatttttct gtccaagagc aagaagcgtt ttttataggg aaactaagaa
      421 tgctaaaaaa atggaaattc attatttcta aacatatcga aggctgctca gtggaacaaa
      481 cccttgcttt taccccgtgt ctacatgaaa taaaatacac gatgagtcag caagcacgaa
      541 tggaagaaaa tattatcgat ttgcacatgt tcatcgattt ttgggaatat tgggcaacac
      601 ataaaaaatt gaaattcgta gtcgaggtga aggagaaaga ttttattacg aagtctttga
      661 tgcataaaaa ggtccacgta caatttgaga atgcgtagcg gaagaattat agccgagctc
      721 tgtttattct atcactcaag aagcctgagg gagctttttg actgtatttt tttgccaata
      781 agtaatctga aaagtagata ttgatagaat aaaaaatagt cttatcactt atgataaggc
      841 tattactcat tattaaactg tttttttctt tcgtttgatg aaaaatagaa taccaaagct
      901 taagcaaata attccagcca atgacaaact taagctagta atatcacctg tttttggcaa
      961 cgtcttttcg tctactttta cttggggttt ttccgtattt tggtcattgt ctgctacttt
     1021 gttatctgga tcttttggtg gaacaggagc gacaggatta tctttacttg gttcctctgt
     1081 cacatacaca atgacgtctt tcgtaatatc tgattctgcc acgcttagtg ttacaacata
     1141 tttaccaggt gtttgtaagt ctactacgtc agcaaaattg ctagtgatgg tttctgttgc
     1201 tggagttacg cttgcatgga tatctgtgag gaaggcttcc tctgtttttg tagtgccttc
     1261 tttgtaacta atctcatcat cactagaaat gctgacagtt tcttttcctg tatatggcac
     1321 agtaactctt ccagaaaaca caccatagtc attgctttca aatgtgtaac tcacttctcc
     1381 gctatctggt aaattttccc acgtaatagt tctagtagct gcatcataaa ccccaccatt
     1441 ttctggtttt atgatggaaa caatgttacc atccttatct aacaggtctg taggaacagc
     1501 gtatacaagt gtattatttt gtgtcgtttg gattggacct actaatgttt gatccattgc
     1561 ttggtactcg ccattctcag cagtaagata atctggtaag gaactaatat cttttagctg
     1621 gttattatta cagcttacat ccaatattgt ctctccaaca gctagattcg ttagttgatt
     1681 gttattacaa gataaaatta ataaatttac gttttttcta acatctaaat tcgttagctg
     1741 attgtcatcg caatataaaa tctctaaagc tagattttgg gtagtatcta aattcgttag
     1801 ttgattgttt tcacaagata actctattaa agctagattt tgatcaatat ctatattctt
     1861 caacccattg ttatcacaag tcaaatatgc tagagcttga ttttggctaa cgtctaagtt
     1921 ggttaactgg ttatcagaac aaaccaaagt gcttaaattc ggattttggc taacatctaa
     1981 atctgtaagt tggtttttag tacaaccaag atttgttaaa gctggatttt gactaacatc
     2041 taaactggtt aactgattga catcgcaagc caaataacgt aaagcggagt ttttactaac
     2101 atctagcttt gttaactgat ttctagggca atacaaatac tctaaagctg tatttttgct
     2161 aacatctagt tgtgttaatt cattgttttc acaagtcaat tcttctaaag caagattttt
     2221 actaacatct aaattcacta acgggttgtt agagcaagcc aagtctttta gatttagatt
     2281 tttactgaca tctatacttt ttagttgatt atcctcaaga taaagtatct ctaatccagt
     2341 caaatattcg attccagtgc tatcttctat gccttggctc cgtgcatcta gtttagttat
     2401 tttagctaat tcctcgacag ttacagattc atccacgttt ttgttcattt tttctgctac
     2461 cgctttagct aaattatcat ctggaaagta atcattataa gttttggttc ctgcttggac
     2521 aagttgattt ttcaggttgt tattcgttgt tttttctttc ggtgtttctt ttaaatctgt
     2581 ttttggtaat tgattttcga ttttagtttc atttgcggtt gtgctctctg cttttaccat
     2641 tggtatcggt aggctacttg taacggtggc acttaatgca attattgtaa aaaatttgga
     2701 cagtttcata gttagttgct ccttcagttg ctgttgttta gtatagtcag cagtgttcaa
     2761 acaaaatata tattagcacg tgaagatgag attttatata gaaactacca gaagatacaa
     2821 aatatcggct attttgtgtc gaaaatgtta cgagttgcgg tcgattataa tattggaaca
     2881 atacttaaga tattaaattc cctaacaatg gctactacgc ctttgtttca gctgttttta
     2941 ttttaaaaac tattctgtga atttgtctgt ttatagtata aatttaccga agatagataa
     3001 aaatccctct tgatactata tgaaaaagta ataataatag t
//
LOCUS       DASDXX010000239         3026 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.240, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000239 DASDXX010000000
VERSION     DASDXX010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.240"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>3026
                     /locus_tag="U0280_002684"
     CDS             <1..>3026
                     /locus_tag="U0280_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2272604.1"
                     /translation="DISPAANMVNRGASVTASNQTYTLPTVLSYQSSFTIDNPVVWYD
                     GTPLAPSSIAHSGTYKDGEITWTNMTAASSSTEFNFNRLKDGLTFSGTITQPYKSAVK
                     VTANAEQTYTIGDTISEEQFLKDVNAKSSDGAPVTSDFATVVDLNTFGEYEVTLTSEK
                     DGIQGDSCKVIVKVLHGAPVISADQTINYDKHATITEKQFLEDVHASTDLNTAITTNF
                     STAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVDKDPAPIISAKTDITYDKFSKKT
                     EAAFLDDIDADTNDGSIITSNFATAVNLDKAGDYTVTLNSINSDGVASTPTAIIVHVE
                     KEKIATISANTAQQYEKYAEINETQFLKDVHASINASPTTAVLESDFETVVKLDVPGT
                     YTVTITATNEDGGVSAPKEVSVIVKKLPAPEITADKEITYPKFDEVSEAEFLSDIHAT
                     INEKNVTITSNFSADVNLNKAGDYTVTLNATNEDGVKATPVEVIVHVQQGERPVITAD
                     ATISYDKFANITEAKFLEDIHATSSDGQSSTVITSNFETATNFKTAMSYTVTLNAVNE
                     DGISAEPVAVTVTINKEPAATLKADAEVSYAKNEAVTESDFFKDVHLEGAEAPSTAKA
                     TSNFDSVVDRSKTGDYTVTINATNEDGAVSTPIEVIVHIGAESAPVITANAEVKYNKH
                     EQTDERRFLYDSDAKIDEANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAANPVEV
                     SVIVSDAAAEKVNVKYVDENGAEISAAETLTGNLDDAFSIDAKSIAGYKCDATLSGVF
                     STVEQTVVFHYKAIEPGVVTIKYEDANGKAVAEDKQITGEVGDDFEAEAQTVSGYSCR
                     AIASGKITEEPQTITFTYTTATPSKKSGEITVQYVDESGKKLADSKKVTGDIDDSYSV
                     EAKAIDGYSVVGDDSAKGVFTEKSQTVTFKYKKNTQVSKDEPKVKGKTNQPPSADTKL
                     KVDNNTLPATGDTENMALAVLIGFNMLLVASIFLFR"
BASE COUNT         1095 a          516 c          634 g          781 t
ORIGIN      
        1 tgatattagt cctgccgcta atatggttaa tcggggggcg agtgttactg cgagtaatca
       61 aacatataca ttgccaactg tattatcata tcaaagctca tttaccatag ataatccggt
      121 tgtttggtat gacggcacac cactagcgcc atcatctata gcgcactctg gtacttacaa
      181 ggatggggaa ataacttgga ctaacatgac cgcagcctcc agttccactg aatttaactt
      241 taataggcta aaagatggtt taaccttctc aggaacaatc acccaacctt ataaatctgc
      301 agttaaagta actgcaaatg cagagcaaac ttatacaatt ggtgatacta tttcagagga
      361 gcagttttta aaagatgtta atgcaaaatc atcagacggt gcacctgtta caagtgattt
      421 tgctacagtg gtggatttaa acacttttgg tgaatatgaa gttactctaa cttctgaaaa
      481 agatggaatc caaggggata gttgcaaagt aattgtcaaa gttcttcacg gagcgcctgt
      541 catttcggca gaccaaacaa ttaattatga taaacatgcg actattacag agaaacaatt
      601 tttagaagat gttcatgcga gtacggattt aaatacagct attacaacta attttagtac
      661 agcagttaac ttgaataaag gcggagatta taccgttgcg ctaaattctg aaaatgagga
      721 cggcgtgaaa gctgaaacgg tctatgtcac tgttactgta gacaaagatc cggcgccgat
      781 tataagtgcg aaaactgaca tcacttatga caaattctct aaaaaaaccg aagcagcttt
      841 cttagatgat atagacgcag atacaaatga tggctctata ataacttcta actttgctac
      901 agcagttaat ttagataaag caggtgatta tactgttact ctgaattcta ttaatagtga
      961 tggtgtagcg tctacgccaa ctgcaattat tgtccatgtg gagaaagaga aaatagcaac
     1021 gattagcgca aatacggcac aacaatatga aaaatatgcg gagattaatg aaacgcaatt
     1081 tctaaaagat gttcatgcta gtattaacgc gagcccaaca accgcagttt tggaaagtga
     1141 ttttgaaaca gtagttaaac tagacgtccc aggaacgtac acagtaacga ttactgctac
     1201 aaatgaagat ggcggagtat cggcaccaaa agaagtttct gtcatagtaa aaaaacttcc
     1261 agcgccagaa atcactgctg ataaggaaat aacctatccg aaatttgatg aagtaagtga
     1321 agcagaattt ttaagtgata ttcatgcaac tattaatgaa aaaaatgtaa cgattacaag
     1381 taacttcagt gccgatgtga atttaaataa agctggcgat tacacggtaa cattaaatgc
     1441 tacgaatgaa gacggcgtaa aggctacacc ggttgaagta attgtacatg ttcaacaagg
     1501 agaacgtcct gttataacag ccgatgcaac tatttcctat gacaagttcg ctaacataac
     1561 ggaagcgaag ttcttagaag atattcatgc aacaagtagt gatggtcaaa gctcaactgt
     1621 aatcacctct aatttcgaga ccgcgacaaa cttcaaaaca gccatgagct acacagttac
     1681 gcttaatgct gtaaatgaag acggcattag cgcagaacca gtagcagtga ccgttacaat
     1741 aaataaagaa ccagccgcga cgttaaaagc tgatgcagaa gtaagctatg cgaaaaatga
     1801 agctgtaacc gaatctgatt tcttcaaaga tgttcattta gaaggagcgg aagccccaag
     1861 tacagcaaaa gcaacaagta attttgattc cgtagtagat agaagtaaaa caggagatta
     1921 tactgttacg ataaatgcta caaacgaaga tggggctgtc tctacaccaa ttgaagtaat
     1981 tgttcacatt ggagcagaaa gtgcaccagt aattacagcg aatgcagaag taaaatataa
     2041 caaacatgaa caaacagatg aaagaagatt tttatatgat agtgatgcaa aaatcgatga
     2101 agctaacgtg gaaattaaaa ccgattttgc agaaaaagta gatattaata aagttggaac
     2161 ttatacggtc acactgactg ctacgaatga agatggccaa gctgccaatc cagtagaagt
     2221 aagcgtcatt gtaagtgatg ctgctgctga aaaagtaaat gtgaaatatg tagatgaaaa
     2281 tggagcagaa attagtgcag cggagacctt aactggtaat ctagatgatg cattttctat
     2341 tgacgcgaaa tctatagctg gatacaaatg tgatgccact ttaagcggcg tattttcaac
     2401 agttgagcag acagttgtgt ttcattataa agcaatcgag cctggtgttg taacgattaa
     2461 atacgaagat gcaaatggaa aagcagttgc cgaagataaa caaataactg gcgaagtagg
     2521 agatgatttt gaagctgagg cgcaaacggt gagtggttat tcatgccgag caattgcaag
     2581 tggtaagata acagaagaac cgcaaactat tactttcaca tacactacag caacgccttc
     2641 caaaaaatca ggcgaaataa cagttcagta tgtagatgag tcaggtaaga aattggctga
     2701 ttctaaaaag gttacagggg atattgatga tagttatagt gtagaagcca aggcaattga
     2761 tggctatagc gtagttggcg atgattctgc taaaggtgtt tttaccgaaa aatcgcaaac
     2821 agttactttt aaatacaaga aaaatacaca agttagtaaa gatgagccta aagttaaagg
     2881 gaaaacaaac caaccaccaa gtgctgatac gaagctaaaa gtagacaata atacgttgcc
     2941 tgccaccgga gatactgaaa atatggcatt agcagtttta atcggtttta atatgctact
     3001 cgttgctagt atattccttt ttagaa
//
LOCUS       DASDXX010000240         3001 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.241, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000240 DASDXX010000000
VERSION     DASDXX010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.241"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            12..725
                     /locus_tag="U0280_002685"
     CDS             12..725
                     /locus_tag="U0280_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2272605.1"
                     /translation="MSGMAKYMEIYIDIRDKINQNKYEINEKLPDGDSMARTYDCSKL
                     TVKKALDMLVQEGMIIRRRGAGTFVKSHSTNGGEFALGPMSGLVNTFGKDNIKSKVIL
                     FSIEKPSKEVAEKLEMQDDYIYRIIRMREVGHKAYSIEHTYMPLAIIPGLEPRHLEDS
                     IYNYIRDDLKLKMQSAHVWVRGDKSNQEDSKLLDLEEPTFMMEIEKLAHLEDGRVFEY
                     SITRHTYESFVFETVFVQN"
     gene            complement(764..1099)
                     /locus_tag="U0280_002686"
     CDS             complement(764..1099)
                     /locus_tag="U0280_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEM2272606.1"
                     /translation="MPKLPNCPECNSEYAYEDRGLLICPECGHEWSAVAEEATEEKVF
                     KDANGNVLTDGDSVTVIKDLKVKGASNPIKMGTKVKNIRLVDGDHDIDCKIDGFGPMK
                     LKSEFVKKI"
     gene            complement(1136..1855)
                     /locus_tag="U0280_002687"
     CDS             complement(1136..1855)
                     /locus_tag="U0280_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2272607.1"
                     /translation="MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHAN
                     QKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNN
                     VNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDADELLELLMEADIDVRD
                     ILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFEKL
                     IDALEDLEDVQKVYHNVELED"
     gene            complement(1951..2460)
                     /locus_tag="U0280_002688"
     CDS             complement(1951..2460)
                     /locus_tag="U0280_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM2272608.1"
                     /translation="MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQL
                     LIQKRQKDKEGWPNYWDLSAAGSALKGETSRQAAEREVQEELGITIDLSNTRAKFSYH
                     FEAGFDDYWFITKDVELSDLTLQKEEVADARFVTKEELEVLRSSGEFIPYFFLNQLFN
                     LKNATSIHF"
     gene            complement(2510..>3001)
                     /locus_tag="U0280_002689"
     CDS             complement(2510..>3001)
                     /locus_tag="U0280_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEM2272609.1"
                     /translation="CQINYDKNGTEKTYIVQFYNISSAYGQWYVTSYNFETKRMQVFR
                     CDKILALKENDTFEAKKMEELKRVADSFNKKADVTTFEVEIASNGVDLFFKENYPSMK
                     LRQQQGKNVIHGFYHKGEEQFIINYLLGYGEKIIAIQPDSLRDMLLNELDTIKKHMQN
                     LSS"
BASE COUNT          847 a          602 c          528 g         1024 t
ORIGIN      
        1 gagccaataa aatgtcggga atggctaaat acatggaaat atacatagat atccgtgata
       61 aaatcaacca aaacaaatac gaaattaacg agaaattgcc tgatggggac agtatggctc
      121 gcacgtatga ttgcagcaag ctcactgtca aaaaagcact ggatatgctt gtacaagaag
      181 gcatgattat tagacgacgc ggggctggga ctttcgtgaa atcccattcg actaacggcg
      241 gagaattcgc gcttgggcca atgtccggac ttgtaaatac atttggaaaa gacaatatta
      301 aatccaaagt cattttattt tctattgaaa aaccatcgaa agaagtcgca gagaaattag
      361 agatgcagga tgactatatt taccgaatca tccggatgag agaagttggt cataaagcct
      421 attcgattga acatacttat atgccacttg cgattattcc gggtctagaa ccacgtcatt
      481 tagaggactc gatttataat tatattcggg atgatttgaa acttaagatg cagagtgcgc
      541 atgtttgggt acgcggggat aaatcaaatc aagaggatag caagctcctc gatttagaag
      601 aacctacttt tatgatggaa attgaaaaat tagcgcattt ggaagatggt cgtgtgttcg
      661 aatattcgat aacgcgccat acgtatgaat cgtttgtgtt tgaaacggtt tttgtgcaga
      721 attaaaaaaa acagcgactc tctactaaga gaatcgctgt tttttatatc ttcttaacaa
      781 attctgattt taatttcatt gggccgaagc cgtcaatttt gcaatcaatg tcgtggtcgc
      841 cgtctactag gcggatattt tttacttttg ttcccatttt gattgggttt gatgcgcctt
      901 ttactttaag atctttgatg actgtgacag aatccccatc tgttagtacg ttgccgtttg
      961 catctttgaa cactttttct tcggtagctt cttctgctac agcgctccac tcatggccgc
     1021 attccgggca gattaataag ccgcgatctt cgtaggcata ctctgagtta cattctgggc
     1081 aatttggtaa ttttggcatt ttatcaattc ctccgattgt tgtaatagtt ggctgttaat
     1141 cttctaattc gacgttatga tatacttttt gcacgtcttc taggtcttct aaagcatcaa
     1201 ttagtttctc gaatttttct aagtcctcac ctgataattg aatatcattt tgaggaatca
     1261 tttcgatttc cgctactgta aattcttcaa ttccagccgc tttcaaacct tcttgtactt
     1321 tgtggaaatc ttctggttct gcataaataa tcgcttggcc atcttcgtct aaaatatcac
     1381 gaacatcaat atccgcttcc attaaaagtt ctaataactc atccgcgtct tttccttcaa
     1441 caccaaaaat ggctgtatta tcaaacatat aagctactga accacttacg cccatgttgc
     1501 cgccgttttt gctataagct gcgcgaacat cggatgccgt acgattcaca ttatttgtca
     1561 gtgcgtctac gataatcatc gaaccatttg gaccaaagcc ttcatagcgc agttctgaat
     1621 atgtttcatc gccagtgcct ttcgcttttt cgattgcacg gtcaataata tgtttcggca
     1681 cattgtatgt ttttgcacgt tcaataacaa aacgtaattt ttggttggca tgcggatctg
     1741 ggtcgcccga tttagccgct acatatattt caattccaaa ttttgcatag atacgactat
     1801 ttgttttatc ttttgacgct tttttctctt taatatttgc ccatttacgg cccatattac
     1861 cactcgcttt ctaattggag ttttctcgtg tctctgtact attataagtg taggaaacga
     1921 atttgttaag tggaaattta gctatattcg ttaaaaatgg atagatgtgg cgtttttgag
     1981 gttaaaaagc tggtttaaaa agaagtatgg aataaattcg cccgaacttc ttaacacttc
     2041 taactcttct ttagtcacaa aacgggcatc tgctacttct tctttttgta aagttaagtc
     2101 gctaagttcc acgtctttcg taataaacca ataatcatca aatcccgctt cgaaatggta
     2161 actgaatttg gcacgggtgt tacttaaatc aattgtaatc cctagttctt cttgcacttc
     2221 tcgttcagca gcttggcgac ttgtttcgcc ttttagcgca gaacccgccg cagaaagatc
     2281 ccaataattc ggccaacctt ctttatcttt ttggcgcttt tggattaaaa gttgcccttt
     2341 ttcgttaaaa atacatacgt gaacaaccaa atgaagttct ccgggcgcta gtttttcacc
     2401 gcggatatgt gttttcccag ttaattcacg attctcattt agcaaatccc attcttccac
     2461 taaaatcggc tccttctaat cattgacttg ttttcattat acaacaaagt taggatgata
     2521 aattttgcat atgttttttt atcgtatcga gctcatttag caacatatct cgcaatgaat
     2581 ctggctggat agctataatt ttttcaccat aacctagtaa ataattgata ataaattgtt
     2641 cctctccttt atgataaaaa ccatgaataa catttttacc ttgctgttgg cgaagtttca
     2701 tcgatggata attttcttta aaaaataagt caacaccatt tgaggcaatt tccacttcaa
     2761 aggtagttac atcagctttt ttattaaaag aatcagccac tctttttaat tcctccattt
     2821 tcttagcttc aaaagtatca ttttctttta gcgcaaggat tttatcacaa cgaaatacct
     2881 gcatccgttt cgtctcgaag ttataactcg tcacatacca ttgcccgtat gccgaagata
     2941 tattataaaa ttgaacaata tacgtttttt cagtcccatt tttatcataa ttaatctgac
     3001 a
//
LOCUS       DASDXX010000241         2992 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.242, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000241 DASDXX010000000
VERSION     DASDXX010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.242"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..2809)
                     /locus_tag="U0280_002690"
     CDS             complement(<1..2809)
                     /locus_tag="U0280_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2272610.1"
                     /translation="MKSKTKQIIMIGVVLFQSLFAYPLITMAEENESKSVNTETTLEP
                     KVALEEKTPQKPTLTNNLKQEKTVLQAGETYETVFPDAALATVIAKAATGSEDITQEV
                     SQTDLNKITSLTATSKGIVDLTGIDLLSKLTSLSISGNQITDISALNGLVNLSNLNVS
                     NNKITSFNLNANSNLPMLSAVDIRSNNLKNINVQDQPKLWTFKCDTGSSSELTEVTLK
                     NLPTLIVAGNGSSAYQNDIVFSSTPGLSKVILENLPSISSSVRLDRCAIEELVINNLP
                     KVSMVNISNNKITTLEGLENLSAVNTLYVSENLVTEIESMHAFPKLQKLELGWNALTN
                     VVMDQVTAEKFPLLRTMNVRGNNLIKINIQDQPKLWTFECDTGSSSELTEVTLKNLPI
                     LIAVGNGSSAYQDDIVFSSTPGLSKVILENLPSTSSEVKLDHCAIEELVINNLPKVSV
                     VIISYNKITTLEGLENLSAVSKIDAYENLVTEIENLHAFPKLQTLTVDNNHISVLPTS
                     LKTENPVLTTLSAMNQTITLKQKVIVSDLVLDNEVKNFGQITTAKSISNKGTYQNNQI
                     KWLFEDIKSVNAVDYQFSEPVQEATIQGTFSGKVTQPIKASKVPVISADAEMNYPKNE
                     TVSEAAFFKDISASVTDDATLTSDFESVVDFAKAGTYEVTLNAVNEDGVKATSVTVLV
                     HIAKSPAPVITADKEITYTKNAEVSITEYLAAIHAKTNDGSPIESDFATAVNWGTAGD
                     YTVTLRSTNEDGVEAIPVEVTVHIAKSPAPVITADKEITYAKNAEVSITEFLAAIHAK
                     TSDGSPIESDFATAVIWSTAGDYTVTLKSTNEDGVEAIPVEVKVHIVEPLAPTISNVT
                     FDVDDVQTTESLEAGELISEPLSPTKEGYTFIGWYDSKTGGNKWDFTTDKMPAYNIIL
                     YAQFSKDTNKAEAAGGDKPSTP"
BASE COUNT          808 a          583 c          515 g         1086 t
ORIGIN      
        1 agggtgttga gggcttatct ccaccggccg cttctgcttt atttgtatct ttactaaact
       61 gagcataaag aataatatta tatgctggca ttttatctgt tgtaaaatcc catttattac
      121 caccagtttt cgagtcatac caaccaataa aagtatagcc ttcttttgtt gggctcaatg
      181 gttcagaaat tagctctcca gcttcaagag attctgtcgt ttgtacatca tccacatcaa
      241 atgtcacatt cgaaatcgtt ggtgctagtg gctctacgat atgcaccttt acttctacag
      301 ggattgcttc tactccatct tcatttgtag attttaacgt tacggtataa tctcctgcag
      361 tgctccatat tacagccgta gcgaaatcac tttcaattgg tgaaccatca ctcgttttag
      421 catgaatcgc tgcaagaaat tccgtgatgc tgacttccgc gtttttagcg tacgtaattt
      481 ctttatctgc ggtaattact ggcgctggcg acttggcgat gtgcacagtt acttctacag
      541 ggattgcttc aactccatct tcatttgtag accttagcgt tacggtataa tctcctgcag
      601 tgccccaatt tacagccgta gcgaaatcac tttcaattgg tgaaccatca ttcgttttag
      661 catgaatcgc tgcaagatat tccgtgatgc tgacttccgc gtttttagtg tatgtgattt
      721 ctttatctgc ggtaattact ggcgctggcg acttagcgat atgcactaat acagtcaccg
      781 aagtcgcttt tactccatcc tcattcactg catttaatgt cacttcatac gttcccgctt
      841 ttgcaaagtc cacaacactt tcaaaatcag aagttagtgt tgcatcatcc gttacgcttg
      901 cagaaatatc tttgaaaaag gcagcttctg ataccgtttc gtttttcggg taattcatct
      961 ctgcatctgc gctaataact ggtactttag atgctttgat tggttgtgtc actttccccg
     1021 aaaaagttcc ttgaatagtt gcctcttgaa caggttcact aaattgataa tcaacggcat
     1081 tcacgctttt tatatcttca aaaagccact tgatttggtt attttgatag gttcccttat
     1141 tagagatgga tttggcagtg gttatttgac cgaaattctt cacttcatta tcaagaacta
     1201 ggtctgacac gataactttt tgctttagag tgattgtttg attcatcgca cttagcgttg
     1261 ttaatacggg attttccgtt ttcaaacttg ttggcaatac actgatatgg ttattgtcta
     1321 cggtgagtgt ctgtaattta gggaacgcat gtaggttctc tatttcagtc actaaattct
     1381 cgtacgcgtc aattttgctt actgcggata aattttcaag tccttctagt gtagtaattt
     1441 tgttgtaact tataattacc actgatactt ttggcaggtt attaattact aactcttcta
     1501 tcgcgcaatg atctaacttt acctcagagc tggttgatgg taaattttct aaaatcacct
     1561 tacttaatcc tggtgtactc gaaaaaacaa tatcatcttg ataagcgcta gagccattac
     1621 ctacagctat caaaattgga agatttttta acgtaacctc tgtcaactct gaactactac
     1681 ctgtgtcgca ctcaaaggtc cataattttg gctggtcttg aatatttatc ttaattaaat
     1741 tattaccacg aacattcatt gttcttaata acgggaattt ttccgctgtt acttgatcca
     1801 ttaccacatt agtaagtgca ttccatccca gctctaactt ctgtaattta gggaaggcat
     1861 gcatactttc tatttcagtc actaaattct cagatacgta taaagtgttt actgcagata
     1921 aattttcaag tccttctagt gtagtaattt tgttgttact tatatttacc attgatactt
     1981 ttggaaggtt attaattact aactcttcta tcgcgcaacg atctaatcgt actgaagagc
     2041 ttattgatgg taaattttct agaatcacct tacttaatcc tggtgtacta gaaaaaacaa
     2101 tatcattttg ataagcacta gagccattac ctgcaactat taaagttgga agatttttta
     2161 gcgtaacttc tgtcaactct gaactactac ctgtgtcaca cttaaaggtc cataatttag
     2221 gttggtcttg aacatttata ttttttaagt tattactacg aatatcaaca gcgcttaaca
     2281 taggtaaatt actattcgcg tttaggttga aacttgttat tttattatta gatacattta
     2341 gattggacaa attcacgaga ccattgagtg cagaaatatc agtgatttgg ttcccgctta
     2401 tacttaaaga ggttaatttt gaaagtaaat ctattcctgt taaatcaact atccctttag
     2461 atgtagcagt tagtgaagtg attttattca agtctgtttg cgatacttct tgcgtgatat
     2521 cctctgaacc agttgctgct tttgcaatta cagtagctaa agctgcatca ggaaaaacag
     2581 tttcatatgt ttcgcctgct tgaaggacag ttttttcttg cttcagatta ttggtaaggg
     2641 taggtttctg aggcgttttt tcttcgagag ctactttagg ctctaacgtg gtttctgtat
     2701 ttactgattt cgattcattt tcttccgcca tggtgattaa cgggtatgcg aagagtgatt
     2761 gaaaaaggac cactccaatc atgataatct gttttgtttt gcttttcata atctatctcc
     2821 ttctcgttgt tgttagcatc ttcagtaata atagaatgaa tgagcaagtt aaaaatacct
     2881 actatttcat tgaaaagtat tatttaagta tatatcccat aaactcctcc acacataaca
     2941 attagtcttt tttcatctaa ttcgttaaag ccctaaaatt cgcgtaaaat ta
//
LOCUS       DASDXX010000242         2871 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.243, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000242 DASDXX010000000
VERSION     DASDXX010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.243"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..504)
                     /locus_tag="U0280_002691"
     CDS             complement(<1..504)
                     /locus_tag="U0280_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEM2272611.1"
                     /translation="MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFL
                     PFIVFVVVNVNAYGLLGGFLISVTAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRV
                     MEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYI
                     GYDFVDLI"
     gene            complement(631..2688)
                     /locus_tag="U0280_002692"
     CDS             complement(631..2688)
                     /locus_tag="U0280_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEM2272612.1"
                     /translation="MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSM
                     VQNIHNFFYGAFDPAGFITVDKPPVALWLQAISALIFGIHGWSVILPQALAGVGSVIL
                     LYVLVKPRFGAWAARITALIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRA
                     KIGWLLLSFALIGVGFNVKMLQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLG
                     VSVSWAVVVDQTAASERPYIGSSQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGT
                     PPSTNSTDSSNATPPTPPSGSMQDGANGGTPPQGNNGAPPTGAPSNAANGGGNGSKMT
                     GSTGMFGTGNAGPLRLFQTALGDQISWFLPLAIIGMLAIFLVYRNENKRIYQLTSRQK
                     EIVFWAAWLIPVAGFFSIAGFFHHYYLIMLAPPIALLSGVGLVALFRLYQDKENWQRF
                     LLPAAVTLTGGLQAFFVAAYLPVLAVVIGIAALITSIILIVLRPQPSKLTAKITALAL
                     AILLIAPTYWSLTPILYGGNSSLPEAGPQLKQSSGGGFADASVDSDLISYLQKNNTGE
                     TYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYFYLPSN
                     SKASDSDVVKWIQENGTEIDSSKWSSSGSTDDDTTSSASFNMQGGAQGMNGTGTGTLY
                     QLK"
BASE COUNT          983 a          585 c          510 g          793 t
ORIGIN      
        1 aatcaagtcg acaaagtcat agccaatata gctaatggcg aagactttga ttagtttgcc
       61 acctacaagc gctaatataa attgatatac ttttatttta gagagacctg caacaatatt
      121 taccgccgaa gatggggtaa atggcattac aagtaaaatg aaaatcggac taaaaccatg
      181 tctatcaatc cattccatta ctcgtttaat ttgtttatgg cccgaaataa aacgtaaaaa
      241 acgagtttga ccaaatttcc gtgctaacaa aaatacgcac aaactaccag caattgctgc
      301 tgtcaccgaa attaaaaaac caccaagtag tccgtatgca tttacgttca ctacaacgaa
      361 aactataaat ggtaaaaatg gtaaaaacgc ttcaataaaa ggtaagagaa aagctaaaag
      421 tggacctaaa ttccgatact cacttagcca gtacattaaa ttatcataag aaaagaaatt
      481 catcatatcc tgccaaaatg tcataagcaa gcctccagta gtctttaaca acatacttat
      541 tttctcacat caaaatgata aagcgctaat aaaacagctt gaatatagtt aaaatcctag
      601 tattttaacc aggattttaa catttcttct ttattttaat tgatatagtg ttcctgtacc
      661 agtgccattc attccttgag cgccaccttg catattaaaa gaagcgctag aagtggtgtc
      721 atcatccgta gaaccggagc tactccactt cgaactatca atttctgtac cgttttcttg
      781 aatccatttt accacatctg agtcagaagc tttactattt gatgggagat agaaatattt
      841 tatttcaccg gcttgaatca tttgttttaa ttgttttaca gttagagttg gatctgttcc
      901 attgaaacca ccaagtgcca taacagcttc tttcgtttta ataatataag gacctgctgt
      961 tgttgcatct gttgtcccaa ataagtaggt ttctccggta ttgtttttct gtaaatagct
     1021 aattaaatca ctatcaacag atgcatcggc gaatccacca ccactagatt gttttaattg
     1081 tggtccagct tcgggtaagg aactattccc accatataaa ataggtgtta aagaccaata
     1141 tgttggagca atgagcaaaa tcgctaaagc gagcgctgtt attttcgcgg tgagtttgga
     1201 aggttgtggt ctaagtacaa ttaagataat agacgtaatt agtgcagcaa taccaataac
     1261 taccgctaaa acaggcaagt aagcagcaac aaagaatgct tgtagacctc cagttagcgt
     1321 aactgcagca ggtagcagga acctttgcca attctctttg tcttggtata accgaaagag
     1381 cgccactaga cctacgccac taagtaaagc aattggcgga gctagcataa tcaaataata
     1441 atgatggaaa aagccagcga tactaaagaa tccggcgaca gggataagcc aagctgccca
     1501 gaaaactatt tccttttgtc tggaggtcaa ttgataaatt cgtttatttt catttcgata
     1561 caccaggaaa atggctagca taccgataat agcaagtggt aagaaccaac taatttgatc
     1621 accaagtgcg gtttggaata gacgaagtgg tccagcgttc cctgttccaa acatgcctgt
     1681 gctaccagtc atttttgatc cattcccgcc gccgtttgcc gcattactgg gagctccagt
     1741 tggaggagcg ccattatttc cttgaggagg agttccgccg ttagcaccgt cctgcatact
     1801 tccacttgga ggagtcggtg gggttgcgtt acttgaatct gttgagttag tgctaggagg
     1861 agtccccatt tccacattac cattactacc tgttccagtt tcttgaccaa gaagccgttc
     1921 cataccatta tagccaaatg ccaactcaag caccgaattg gtttgactac taccgatata
     1981 aggtcgctct gaagcagctg tttgatcaac tacgactgcc caagaaacag agacacctag
     2041 cattaagaca agtgcgatta ctaattgaac tagctttttt ctccaactta gttttgtagc
     2101 aataaaatag aagagcaaaa atgcgggcac gaccatgaaa gcttggagca tttttacatt
     2161 aaaaccgaca ccaatcaacg caaaagaaag taaaagccag ccgatttttg cacgatgaac
     2221 agctttaaaa aggaaaaagg ttgctagtaa taacacaaat acaagaatag catccatatt
     2281 attagtacgc gtcacggcta ccgcaatagg agtcagcgcc ataatcaaag cagtaattct
     2341 tgcagcccat gcgccaaatc taggtttgac gagcacataa agcaaaatca ccgaaccaac
     2401 accagccaac gcttgtggta agataacact ccaaccatgt atgccgaaaa taagggcact
     2461 gatcgcttgc aaccaaagtg caacaggtgg cttatctacc gtaataaaac cagcaggatc
     2521 aaaagctccg tagaaaaaat tatgaatatt ttgcaccata cttgtcacag cagctgtata
     2581 ataaggattt accgtatcat cattccaaat accataaaaa ttaaaaaaga tggcaataac
     2641 aataattcca acaaaataaa aatctaaatg ttgtatccgt ttcttcatat tcttcacttc
     2701 tttccataag ataatacctt ttattttaga gttcaaatat gaaaaaaacg tgaataaatt
     2761 tagaaataaa cgaggtattt attttttaca aagaaattcc agaaaaagtc ttgtcaaaac
     2821 taacatagaa tggtattata taaaagttgt taaaacacta agaactactt a
//
LOCUS       DASDXX010000243         2859 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.244, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000243 DASDXX010000000
VERSION     DASDXX010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.244"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..354
                     /gene="eetA"
                     /locus_tag="U0280_002693"
     CDS             <1..354
                     /gene="eetA"
                     /locus_tag="U0280_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-based extracellular electron transfer
                     system protein EetA"
                     /protein_id="HEM2272613.1"
                     /translation="AIFSYVKANEPAPANGKKELVAVISVDSKEYKTVTLTGHKGTES
                     FDVKQPDGHTNTIEVSGEEIRISKANCNDQVCVRTGAIDKQGDTVVCLPHKLVIEVKA
                     SDGSSGDSDDPIISS"
     gene            387..929
                     /gene="eetB"
                     /locus_tag="U0280_002694"
     CDS             387..929
                     /gene="eetB"
                     /locus_tag="U0280_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-based extracellular electron transfer
                     system protein EetB"
                     /protein_id="HEM2272614.1"
                     /translation="MTKNRRLVYIALLAAQAVVISLLERAIPFPFAFAPGAKLGLANI
                     ITCISLYTLSAKDTFMIICIRLVLSTLLGGTISTFMYSAAGAILSFLGMWLVQQLGPK
                     RVSIIGVSVTGGILHNVGQLVIASWIAGTWSVMLYLPVLSFIGILSGIAVGIAANYLL
                     KNVQTLRMFADAKQSQAAQK"
     gene            951..1931
                     /locus_tag="U0280_002695"
     CDS             951..1931
                     /locus_tag="U0280_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM2272615.1"
                     /translation="MQLHAMWDEYPALSKDLQEVLQTIEKNIQIRDKHVEQNVKDLIH
                     AGGKLLRPAFALLSAQAGPDYDKERAVSIAAALEVLHMATLIHDDVVDDSPLRRGIPT
                     IHSKYGRNYAVYTGDYLFCICFKILSAHASSVENIEFNSKNIEKILMGELDQMRTSYK
                     MNVTVREYLTRISGKTAQLFALSCYSGATGSKATRMTVAKCYNIGHYLGMAFQIIDDV
                     LDYTSTDEGLGKPVLNDMKQGIYSLPLIYAMKGHLAEFEPLLSQKLDMTDEASEQVLA
                     LISKYKGVEQAFKLANKYTNKALREIKKLPAGAYRDDMYRLTKNILDRDI"
     gene            2021..>2859
                     /locus_tag="U0280_002696"
     CDS             2021..>2859
                     /locus_tag="U0280_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide phosphodiesterase"
                     /protein_id="HEM2272616.1"
                     /translation="MIRFFKIVTPILLSISLVACSSASGKTENITAPIEKDRNLSMVV
                     TTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVEAKKTDVLIISGDL
                     TNNGEKTSHEELAKKLTQVEKTGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTD
                     FSKIYGDFGYKDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGTPTTEGGLTA
                     GTLDWIKESSALAKKNGAKLVPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGSMDF
                     SLSG"
BASE COUNT          880 a          518 c          600 g          861 t
ORIGIN      
        1 gctatttttt catatgtaaa agcgaatgaa ccggctcctg ctaacggaaa aaaagagctt
       61 gttgcagtta tttctgttga tagtaaagaa tataaaactg ttacgctcac tgggcacaaa
      121 gggacggaaa gctttgatgt gaaacaacca gatggacata ctaacacgat tgaggtttcg
      181 ggggaagaaa tccgaattag taaagcgaac tgtaacgatc aagtatgtgt tcggactgga
      241 gcaattgata aacaaggcga tacagttgtt tgtcttccac ataagttagt aattgaagta
      301 aaagcgagtg acgggagttc aggcgattca gatgatccga ttatctcttc ctgaccttat
      361 cctccaatag ataggaaagt gtttctatga caaaaaacag acgattagta tatattgcac
      421 ttctggctgc tcaagcggtt gtcattagtt tactcgagcg ggctattccg tttccatttg
      481 cgtttgctcc tggggcgaaa ctaggtcttg ctaatattat tacgtgtatt tcgctttata
      541 cattatcggc aaaagatact tttatgatta tctgcattcg gttagtttta tccactttgc
      601 ttggtgggac aatttcgacc tttatgtata gcgcggccgg agctatctta agttttcttg
      661 ggatgtggct cgtacaacaa cttgggccga aacgcgtgag catcattggc gttagtgtta
      721 ctggtgggat tttacataac gttggtcagc tcgtaattgc tagttggatt gctggtactt
      781 ggtccgttat gctttatttg ccagtattat ctttcatcgg cattctttct gggatcgcgg
      841 ttgggattgc agcaaattac ctactgaaaa acgtccaaac tttgcggatg ttcgctgatg
      901 ctaaacaaag tcaagcagca caaaaataac tttaaaaaaa ggagttcaat atgcaacttc
      961 atgctatgtg ggatgagtat cctgcacttt ccaaagattt acaagaagtc ttacaaacga
     1021 ttgaaaaaaa tattcaaatt cgcgataaac acgttgagca aaacgtgaaa gatttgattc
     1081 acgctggtgg gaaattactg cgccctgctt ttgcgcttct ttctgcgcaa gctggtcctg
     1141 attatgataa agaacgtgct gtttcgattg ctgctgcgct tgaagtactt catatggcga
     1201 cgttgattca tgatgatgtc gttgatgatt ctccgttacg ccgcgggatc ccgacaattc
     1261 attctaaata tggtcgtaat tatgctgttt atacaggcga ttatttattc tgcatctgtt
     1321 tcaaaatttt atccgcacat gcttcttccg tggagaacat tgaatttaat agtaaaaata
     1381 tcgaaaaaat cttaatgggc gaactagacc aaatgcgcac aagctacaaa atgaatgtaa
     1441 ctgttcgtga atatttaacg cgtatttctg gtaaaacagc acaattattt gcacttagtt
     1501 gttactctgg cgcaactggc agtaaagcaa cacgcatgac agttgcaaaa tgttataaca
     1561 tcggacatta ccttggcatg gctttccaaa ttattgacga cgtactggat tacacaagta
     1621 cggatgaagg tcttggcaaa cccgttttaa atgatatgaa acaaggtatt tattctctgc
     1681 cacttattta tgcaatgaaa ggtcacttgg ctgaattcga gccacttctt tctcaaaaac
     1741 tagatatgac ggatgaagct tccgaacaag ttttagcact tatttctaag tataaaggtg
     1801 tcgaacaggc attcaaactt gccaacaaat atacgaataa agcgcttcgt gaaatcaaaa
     1861 aactaccagc tggcgcgtat cgtgatgata tgtaccgctt gacgaaaaat attttagatc
     1921 gagatatcta aaccgtttag aacattgctc cttccatatt gagttttgtt ctaaattttg
     1981 gaacttattg tgaaaataca aacatgaaag cgtgattaac gtgattcgat tttttaaaat
     2041 agttacaccg atactcctat ctatctcttt agttgcttgt agttccgcaa gtggaaaaac
     2101 agagaacatt actgcgccaa ttgagaaaga ccgtaattta tcgatggtcg taacgacgga
     2161 tgttcattac tttgcgccat cactaaccga caacggaaaa gcctttgaaa aatatgtggc
     2221 tgcgggtgat gggaaacagt tagcttatag cgatgaaata accgatgctt ttttggcgga
     2281 tgtagaggct aaaaaaacag acgtccttat tattagtggc gaccttacga acaacggtga
     2341 aaaaacaagt catgaagagt tagccaaaaa acttactcaa gtagagaaaa ctgggacgca
     2401 ggtttttgtt gttccgggta atcatgacat taacaaccct tgggcccgca aatttgaaaa
     2461 agataagcag ttaccaaccg acactatatc accaactgat ttcagtaaaa tttatggtga
     2521 ttttggatat aaagatgcta tttcaagtga tgagttttcg ctgagttatt tagcagctcc
     2581 ttcttccaaa gtatggctgt taatgttaga cacggctatt tataaaacaa atatgcagca
     2641 aggaactccg acaacagaag gtggactaac agctggaaca ctagattgga taaaagaaag
     2701 cagtgcgctt gcaaagaaaa acggcgctaa acttgtccct gttttgcatc ataatttaac
     2761 tgatcataat gatgttattc aaaaaggtta tactattaat tataatcaac aagtaattga
     2821 tgcgcttacg gaaggctcta tggatttttc tctaagtgg
//
LOCUS       DASDXX010000244         2839 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.245, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000244 DASDXX010000000
VERSION     DASDXX010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.245"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..179
                     /locus_tag="U0280_002697"
     CDS             <1..179
                     /locus_tag="U0280_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase I"
                     /protein_id="HEM2272617.1"
                     /translation="LDTQQLRLKHKMLVNALYKSAKRKKESDLNDNERDIVRAYEDDS
                     QIDLNKLDGILDRV"
     gene            392..676
                     /locus_tag="U0280_002698"
     CDS             392..676
                     /locus_tag="U0280_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 domain-containing protein"
                     /protein_id="HEM2272618.1"
                     /translation="MREIKVSEVTFQQHATKLASKSSGRYLPLKNGNMAYSRANSIDQ
                     LRSALIDLVGVVEDFQHVTKQDAGRLKKMGIAYAKQDQVMGQKINQLEVR"
     gene            677..1045
                     /locus_tag="U0280_002699"
     CDS             677..1045
                     /locus_tag="U0280_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P"
                     /protein_id="HEM2272619.1"
                     /translation="MDSAHRQLEQQLQQIKKAKIMAETDVDQTRRKQNEQDWLEEDSH
                     QLTQEKLVLLDFLRSGWQGEEASGFHRFLEEQQHEESQAWRRDLQDKRSDLDTELQEN
                     KARLHTLETKQATLQKEWSK"
     gene            1042..2478
                     /locus_tag="U0280_002700"
     CDS             1042..2478
                     /locus_tag="U0280_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009928199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
                     /protein_id="HEM2272620.1"
                     /translation="MSRIDIAELNDFLHGLRSSNAEAKAMIRKIKEAAMDYAQDNRLK
                     GEAVSTSKRYFSSTYTSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQ
                     EAMAKVSQLQRKEEDLHRQLTAPNTKPDMQQVYAVKSRSVHTQLLKAIEKENILERYL
                     AFEQSHGQFFSALDELIRATGRAVQELLHHVTFNDKTGTYSVPKSAVNSLLLMKKALD
                     NARTENDQDPFPKAFEDYTVLAYTYVNDQGETVTMWLLEKDGKRVENKELQDFLEKHG
                     QELDPLLYTNLSGEELERKVNDSWKEGINYLNGQKVSGFSGATLRSSAYVASMKDWTD
                     DAGLTDMALGLGFGIAAARNKAIIPKKSSGLKFDDIEKLENHFTKHGGEFKGAYSNIN
                     EYLKGANNVIKNGEKVQYNYTLKDGTTELRTGYVKFMGNTSKGKAKFEFVGTNLSGDI
                     TTYHVKRGEDVYKLLNGNKHINVINPIE"
     gene            2490..>2839
                     /locus_tag="U0280_002701"
     CDS             2490..>2839
                     /locus_tag="U0280_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272621.1"
                     /translation="MRYEAKIISENPNIEEELKIKIKDIELLCFVEEYKCSVEVGQEY
                     IVELETVVFDDLDIEKSTLQAKEITQVADSFAYFIRGVFHPSSKKIDSGIEIDLADED
                     ISDFWYLENQFVAL"
BASE COUNT         1045 a          425 c          654 g          715 t
ORIGIN      
        1 gactagatac acagcaactc cgcttgaaac ataaaatgtt agtcaatgct ttatataaga
       61 gtgcaaaaag aaaaaaagag agtgacttaa atgataatga aagagatata gtgcgtgctt
      121 atgaagacga ttcgcagatt gatttgaata agttagatgg tattttagat agagtgtagc
      181 tgacaaccaa aagaaaatag cccaaaagcc tgtctttaaa gagaggcttt ttggtattga
      241 cttagttaga agatgaaatg ttaatttttt cacttaaaaa gctgatttta agctgttttt
      301 caatgaattg tttcacagaa tgctcacaaa agaggtgtgc taccggtgct ataatgaggg
      361 ggaaggattt acatagagag gaagcatgca gatgagagaa ataaaagtta gcgaagtaac
      421 cttccaacaa cacgcaacca aattggcaag taaaagttcg ggaagatact taccattaaa
      481 aaacgggaac atggcttatt ccagagccaa ttcaattgat caattgcggt cggcattgat
      541 tgatttggta ggcgtagtgg aggattttca acacgtgacc aagcaagatg cgggccgatt
      601 aaagaaaatg ggtattgcct atgccaagca agaccaggtc atgggacaaa aaatcaatca
      661 gttggaggtg cgttaattgg atagcgcaca ccgccaacta gaacaacaac tccaacaaat
      721 taaaaaagcg aaaataatgg cagaaacgga tgtcgatcaa acgagaagaa aacaaaatga
      781 acaagattgg ttagaagagg acagccacca attaacacaa gaaaaactgg tgttattaga
      841 ctttttacgc agtggctggc aaggtgaaga agccagtggt tttcatcgtt ttttagaaga
      901 gcagcaacac gaagaatctc aggcttggag gcgtgatctt caggataaaa gaagcgattt
      961 agacacggaa ttacaagaaa ataaggccag gctccacacg ttagaaacca aacaagccac
     1021 cttacaaaag gagtggagca agtgagccgg atagatattg cggaattgaa tgactttctc
     1081 cacggtttgc gaagtagtaa tgcggaagcc aaagcgatga ttagaaaaat taaagaagca
     1141 gcgatggatt acgcccagga caatcgttta aaaggggaag cagttagtac ctccaaacgg
     1201 tatttttcta gtacctatac aagtatttgc cagagcatca ttgaggcact ggatgaaagc
     1261 gaagagcgac tagcgcaata tattcgcgag ttcgggagcc aagtggatag ttcgccttct
     1321 gccagaattg atgcagaaat cttacaagaa gcgatggcca aggttagcca gttacagcga
     1381 aaagaagaag acttgcatcg acaattgacg gcgccgaaca cgaagccgga tatgcaacaa
     1441 gtctatgcag tgaaatcaag aagtgttcat acacaattat tgaaggcaat cgaaaaagag
     1501 aacatcctag aaagatattt agcttttgaa caaagtcatg gccagttttt tagtgcgtta
     1561 gacgaactca ttcgagcaac cggacgtgcg gtgcaagaat tgctacatca tgtgactttt
     1621 aacgataaaa cagggactta ttccgtgccg aaaagtgcgg taaacagctt gttgcttatg
     1681 aaaaaagcgc tggataacgc acgaacagaa aatgaccaag acccctttcc gaaagctttt
     1741 gaagattaca ccgtgttagc ttatacttat gtcaatgatc aaggcgaaac cgtgacgatg
     1801 tggttacttg aaaaagatgg aaaacgagta gaaaacaagg aattacaaga tttcttagaa
     1861 aaacatggtc aggaattaga cccacttctt tataccaacc tttctggaga agaactcgaa
     1921 cgaaaagtga atgattcttg gaaagagggt atcaactatt taaatggtca aaaagtatct
     1981 ggattttctg gagccacact gcggtcatcc gcttatgtgg ctagtatgaa agattggaca
     2041 gatgatgctg ggttgacaga tatggcatta ggtttagggt ttgggattgc agcagctaga
     2101 aataaagcga taatacctaa gaaatccagt ggacttaaat ttgacgatat agaaaaattg
     2161 gaaaaccatt ttacaaaaca tggaggggag tttaaaggtg catattcgaa tataaatgaa
     2221 tatctaaaag gggcgaataa tgtaattaag aatggtgaaa aagtacaata taattataca
     2281 ttgaaggatg gaacaaccga gttgagaact ggctatgtga agtttatggg gaacactagt
     2341 aaaggaaaag caaaatttga atttgttggt actaacttat ctggagatat tacgacctac
     2401 catgtgaaac gcggcgagga tgtatataaa ttattgaatg gaaacaagca tataaatgtg
     2461 ataaatccaa tagaatagga gaataataaa tgagatatga agcaaaaata atttcagaaa
     2521 atcctaatat tgaagaagag ttgaaaatta aaataaaaga tattgaactt ttatgttttg
     2581 ttgaagaata caaatgttca gtagaggttg gccaagaata tattgttgag ttagagacgg
     2641 tcgttttcga tgatttagat attgagaaaa gtactttaca agctaaggaa ataactcaag
     2701 tagcagatag ttttgcatac tttatcagag gcgtttttca tccttctagt aagaaaatag
     2761 attcagggat agagattgat ttagcagatg aggatatttc tgatttttgg tatttggaaa
     2821 atcaatttgt tgcattaaa
//
LOCUS       DASDXX010000245         2752 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.246, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000245 DASDXX010000000
VERSION     DASDXX010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.246"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..543
                     /locus_tag="U0280_002702"
     CDS             <1..543
                     /locus_tag="U0280_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM2272622.1"
                     /translation="KKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEM
                     VANSFNIPLGLAKGDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLERTYM
                     KLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAP
                     LGENEEDLKGGDINENKGDS"
     gene            521..1267
                     /locus_tag="U0280_002703"
     CDS             521..1267
                     /locus_tag="U0280_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HEM2272623.1"
                     /translation="MKIKEIPKIESRLEFKNSSENPEIADLYLYGSIGSGWFDDITSS
                     EVQNFLKTSSVSQINVHVNSGGGDVFESIAIHNLLKAHPAKISIYIDALAGSGASVIA
                     MAGDEIIMPSNAMMMIHKAWTIAAGNADEFRKVANDMDKIDHAVTESYTERFVGEREE
                     LVTLLTNEEWLTAEECVTLGFCDSIGEIELNEEEQVTENSNEAVTVASIVDKYKVVAS
                     TENKAIQTKNNIFKSIANRSDAFLLGGNDK"
     gene            1264..2436
                     /locus_tag="U0280_002704"
     CDS             1264..2436
                     /locus_tag="U0280_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEM2272624.1"
                     /translation="MNNLDKKDSETLNISTAFLNAIKEGATEAEQVTAFTNMAEQIQN
                     NIIAQARKEVNREMNDNNVLASRGANALTSDESKYYNEVIAGNGFAGVTALLPPTVFE
                     RVFEDLTVEHPLLSKINFVNTTATTEWIISVGDVATAWWGPLCAEIKEVLDNGFDKIQ
                     TGMYKLSAYIPVCNAMLDLGPSWLDQYVRTILGEAMALGLEAGIVNGSGKDQPIGMMR
                     DLNNVTAGEHPVKTATPLTDLTPATLATKVMLPLTDNGKKSVSDAILVINPADYWSKI
                     YAATSYMTPQGVWVTGILPVPLEIVQSVAVPVGKAVAGRAKDYFMGIGSEQVIRTSTE
                     YRLLDDETLYYAKQYANGRPKDNSSFLVFDITGLEGSPAIDVNVVNNATPSETPAE"
     gene            2459..2578
                     /locus_tag="U0280_002705"
     CDS             2459..2578
                     /locus_tag="U0280_002705"
                     /inference="COORDINATES: protein motif:HMM:NF020688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272625.1"
                     /translation="MKVVELKEELDKRGITYNTSDLKSDLILKLEEDDLNAGV"
     gene            2565..>2752
                     /locus_tag="U0280_002706"
     CDS             2565..>2752
                     /locus_tag="U0280_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272626.1"
                     /translation="MQVSDELLQEVKDYLHITWSDETEDKRIRKIIERVSARISQLTG
                     VSFTFEKEDAAKQLLFDGV"
BASE COUNT          953 a          409 c          606 g          784 t
ORIGIN      
        1 aagaagtttt tagcagaagg tgactctgct ttacctgtcg aagatggaat ggaaatagac
       61 gaacttgcgg gagattctaa aatagcagaa tcaagagata taaaaaaaat gattgatgat
      121 gtttttgaaa tggttgcaaa tagttttaac attccacttg gtttagcaaa aggagacaca
      181 gtgggcttaa gtgaacaggt taattcattc ttaatgttta gtataaatcc tatcgctgag
      241 atgtttaccg atgaaggaaa cagaaagttt tatggtaggg attcggtttt agaaagaacc
      301 tatatgaaat tagatactac aagaattaag gttcaagata ttcaagaaat tgcgagttca
      361 atggatgtgc tgttccatat cggtgtaaat acaatagatg ataatttaag aatgattgga
      421 cgtgaacctg tgatgagtcc agaaactcaa gagcgttttg ttacaaaaaa ttatgcacct
      481 ttaggtgaga atgaagaaga tttgaaaggg ggtgacataa atgaaaataa aggagattcc
      541 taaaatagaa agtcgattag agtttaaaaa cagctctgaa aacccagaaa tcgcggactt
      601 gtatttatac ggatcaatag gtagtggctg gtttgatgat attacgtcta gtgaagtaca
      661 gaatttttta aaaacatcta gcgtctctca aataaatgta catgtcaata gcggtggtgg
      721 agatgttttt gaatccattg ctattcataa tctattaaaa gcacacccag ctaaaatcag
      781 tatttatatt gatgctcttg ctggaagtgg tgcatctgta attgcaatgg caggtgatga
      841 aattattatg ccaagcaatg caatgatgat gattcataaa gcctggacaa tagcagctgg
      901 taatgcagat gaatttagaa aagttgcgaa tgacatggac aagattgacc atgcagtgac
      961 ggaaagttat acagaacgct ttgttgggga gcgtgaagag ttagtaacat tacttactaa
     1021 cgaggaatgg ttaacagctg aagaatgtgt gacacttggt ttttgcgatt ctattggtga
     1081 aattgaatta aatgaagagg aacaagttac tgagaattca aatgaagcag taacagtagc
     1141 aagtatagtt gataaatata aagtagttgc atcaactgaa aacaaagcaa ttcaaacaaa
     1201 aaataatatt tttaaaagta tcgcaaatag aagcgatgct tttttattag gaggaaatga
     1261 caaatgaata accttgataa aaaagattca gaaacattga acatcagcac agcattttta
     1321 aacgcaatta aagaaggcgc gacagaagcg gagcaagtaa cagcgtttac aaacatggct
     1381 gaacaaattc aaaacaatat tatcgctcaa gctcgtaaag aagtaaatag agaaatgaat
     1441 gataataatg tactcgctag ccgtggtgcc aacgctttaa caagtgatga aagcaaatac
     1501 tataatgaag tcattgcagg aaacggtttt gctggagtta ctgcattact tccacctacc
     1561 gtttttgagc gtgtgtttga agatttaacg gtggaacatc ctctattaag taaaattaat
     1621 tttgttaata ctactgcaac aacggaatgg attattagtg ttggtgatgt cgcaactgct
     1681 tggtggggtc ctttatgtgc cgagattaaa gaagttttag acaatggttt tgataaaatt
     1741 caaactggaa tgtataaatt atctgcttat attccggttt gtaatgcaat gctcgattta
     1801 ggaccgtcgt ggttagatca atatgttcgt actattttag gtgaagcaat ggcgcttggt
     1861 cttgaggctg gtattgttaa tggttccggg aaagaccaac caatcggaat gatgcgcgat
     1921 ttgaataatg ttacggctgg ggaacaccca gttaaaaccg caacacccct gaccgatttg
     1981 acaccagcta cactagcaac aaaagtaatg ttacctctga cagacaacgg aaagaaatct
     2041 gtcagtgatg cgattcttgt tataaatcca gctgattact ggagcaaaat ctatgcggca
     2101 actagttaca tgacgcccca aggagtttgg gtgacaggta tcttaccagt tccacttgag
     2161 attgttcaat cggttgcagt gcctgtcggt aaagcagtag ccggtcgtgc taaggattac
     2221 tttatgggaa ttggttcaga gcaagttatt cgcacatcaa ctgaatatcg tttattagac
     2281 gatgaaacac tctactatgc taagcaatat gcgaatggtc gacctaaaga caattcttct
     2341 ttcttagtat tcgatattac aggtctagaa ggttcgcctg ctattgatgt gaatgtagtg
     2401 aataacgcga caccctccga aacccctgct gaataaagcg gggaataact attctactat
     2461 gaaagttgta gagttaaaag aagaactaga taagcgagga atcacatata acacttcgga
     2521 tttaaaatct gacttaatat taaagttaga ggaggatgat ttaaatgcag gtgtctgatg
     2581 aattattaca agaagtaaaa gactacttgc atattacttg gtctgatgaa acagaagaca
     2641 aacgtataag aaaaatcatt gaaagagtat cggcacgcat tagtcaactg actggcgtgt
     2701 cttttacttt tgaaaaagaa gatgctgcga aacaattgct tttcgatggt gt
//
LOCUS       DASDXX010000246         2747 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.247, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000246 DASDXX010000000
VERSION     DASDXX010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.247"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..180
                     /locus_tag="U0280_002707"
     CDS             <1..180
                     /locus_tag="U0280_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272627.1"
                     /translation="VDEDYYVKLIKLDVEAFLYDKYDKETDLSDQLHDEAETLKEYHL
                     SLDDDGTYMVKEVAK"
     gene            366..560
                     /locus_tag="U0280_002708"
     CDS             366..560
                     /locus_tag="U0280_002708"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272628.1"
                     /translation="MTKQSRKNKEYVYELICSFWNNEKSLGIFKTRAAAERAMYDDID
                     DTPKQIYTDYYEIYKRPIYE"
     gene            575..802
                     /locus_tag="U0280_002709"
     CDS             575..802
                     /locus_tag="U0280_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3850 domain-containing protein"
                     /protein_id="HEM2272629.1"
                     /translation="MTKTHELKITPEFFAAVTEGRKTFEIRKNDRDFQVGDILILREW
                     NHEFSGFQIAVEVVYMTDYEQKDGFVVLGIV"
     gene            814..1215
                     /locus_tag="U0280_002710"
     CDS             814..1215
                     /locus_tag="U0280_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272630.1"
                     /translation="MTSTIKISEKDKVFQIATKSGWAVKVGMQVTIDGIDFAIYPFYA
                     KSNVFIQVSEVESGGVLINFPVDFIDVFVLDTRDKAIEYYKDNVIPLVQKKIEVNGLD
                     EFRKAIKNAKNYILENFGERPQIKKFEEANE"
     gene            1212..1694
                     /gene="ssb"
                     /locus_tag="U0280_002711"
     CDS             1212..1694
                     /gene="ssb"
                     /locus_tag="U0280_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM2272631.1"
                     /translation="MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNAQGEQ
                     EADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTRNYEDSDGKRVFVTEVVAETVQF
                     LEPKNINAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFADEGKAIDINEDDLPF
                     "
     gene            1715..1906
                     /locus_tag="U0280_002712"
     CDS             1715..1906
                     /locus_tag="U0280_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272632.1"
                     /translation="MTAETALENINNLSKRLASIRFMANAIAEVTNYQISEIEQMGDE
                     EIEAKYTAYVINEANEYAK"
     gene            1851..2255
                     /locus_tag="U0280_002713"
     CDS             1851..2255
                     /locus_tag="U0280_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1064 domain-containing protein"
                     /protein_id="HEM2272633.1"
                     /translation="MRRNIRRTSLTKQTSTRNKYNAKKVVIDNIKFDSKAEAAYYQQL
                     KLLKMTGEVVSFDLQPEFVLQESFRKNGKLYRAIKYKADFLVRYNDGHEELIDVKGML
                     TNEFILKRKLFEMRYMQSIKCVKLKGGEFLEV"
     gene            2259..2642
                     /locus_tag="U0280_002714"
     CDS             2259..2642
                     /locus_tag="U0280_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2481 family protein"
                     /protein_id="HEM2272634.1"
                     /translation="MAVMEMTKNKTRQREIISYIANNDVELNELLKLQKELNNLMKEN
                     TEEKQKTYWTKTFDRIVKKKKWAEITVREFADLRNAGLTCYAIAEHFKVSKSTVLNYT
                     QRNKKEYYQIFDMNEYQRNKEIWND"
BASE COUNT         1050 a          367 c          614 g          716 t
ORIGIN      
        1 gttgatgaag attattatgt taagttaata aaattagacg tagaagcatt cttatacgat
       61 aaatatgaca aagaaacaga tttgagtgat cagttacacg atgaagctga aacattgaaa
      121 gagtatcatt tgagtttaga tgatgacgga acttacatgg tgaaagaggt ggcgaaataa
      181 tgtgtgagta ttgtaagaat gactctatga tgaataacga gcctttacta agttttgatg
      241 aagagtataa agaacctggt gttgttagac tagatagcac tggcaactta ggagttttca
      301 gctactacgg tttaacagct aggaatatca attactgtcc aatgtgcgga aggagtttgg
      361 aataaatgac taaacaaagc cggaaaaata aagaatacgt ctatgagttg atatgtagtt
      421 tttggaacaa tgagaagtcg ctaggtatat tcaaaacaag agcagcagcg gaaagggcta
      481 tgtatgacga tatagacgac acgccgaagc agatttatac agattattac gaaatatata
      541 aacgaccaat atacgagtga aaggaagcgt ctaaatgact aaaacacacg aattaaaaat
      601 aacacccgaa ttttttgcag ctgtgacgga aggacgaaaa acgttcgaaa ttagaaagaa
      661 tgaccgcgat ttccaagtag gagatatttt gattttacgc gaatggaacc atgaattttc
      721 aggctttcag atcgctgttg aagtagttta catgacggat tatgagcaaa aagacggatt
      781 tgtcgtctta gggattgtat agggggagaa caaatgacta gcacaataaa aatatctgaa
      841 aaagataaag tgttccagat tgcgacgaaa agtggatggg ctgtgaaggt ggggatgcaa
      901 gtgacgatag atgggataga ctttgcaatt tatccgttct atgcaaaaag caatgttttt
      961 atacaagtta gtgaagttga aagtggcgga gtattaatta attttccagt cgattttata
     1021 gacgtttttg ttttagacac tcgagataaa gcaatcgaat attataaaga taatgtgatt
     1081 cctttagttc agaaaaaaat cgaagtaaat ggattagatg aatttagaaa agcaattaaa
     1141 aacgcgaaaa attatatact tgaaaatttc ggagaacgac cacaaattaa aaaatttgag
     1201 gaggcaaacg aatgatgaac cgtgtagtgc ttgtaggacg attaacgaaa gaccctgaat
     1261 tacgttacac tccagctgga gtagctgttg cgacttttac gctagcagta aatcgcccat
     1321 ttaaaaatgc acaaggagaa caagaagccg atttcattaa ttgtgttgtt tggcgtaaac
     1381 cagcggaaaa cgcagctaat ttcttgaaaa aaggaagcat ggcaggcgtt gatggacgtg
     1441 ttcaaactcg taattatgag gacagcgacg gtaaacgcgt tttcgttact gaggtagttg
     1501 ctgaaacagt tcaattctta gagcctaaaa atatcaacgc agaaggcgct acatcgaata
     1561 attatcaaaa ccaagctaat tattcaaata acaataaaac aagctcatat cgagcagata
     1621 cgagtcagaa gagtgattca tttgcagacg aaggcaaggc gattgatatt aatgaagatg
     1681 atttgccatt ttgagcgaaa gggtgaataa aaaaatgaca gcagaaacag cgctagaaaa
     1741 tattaataat ctgagtaaaa gattagcgag catcagattt atggctaatg cgattgcaga
     1801 agtcacaaac taccaaatta gcgaaattga acaaatgggg gacgaagaaa ttgaggcgaa
     1861 atatacggcg tacgtcatta acgaagcaaa cgagtacgcg aaataaatac aatgcgaaga
     1921 aagttgttat tgacaatata aagttcgata gcaaagcgga agcagcatat tatcagcaat
     1981 tgaaactatt aaaaatgact ggtgaagtag ttagtttcga tttacagcca gagtttgtgt
     2041 tacaagaaag ctttcgaaaa aacggaaaac tgtatcgagc tattaaatat aaagctgatt
     2101 ttctcgtacg atacaatgat gggcatgagg agttaatcga cgtcaaaggc atgttaacaa
     2161 acgagtttat actcaaacga aaactatttg aaatgcgtta tatgcaatca attaagtgtg
     2221 tgaaattaaa aggcggggaa tttttggagg tgtgataaat ggcagtaatg gagatgacaa
     2281 agaacaaaac aaggcagcgg gaaattatta gttatatagc aaataacgat gtagaactaa
     2341 acgaattact aaagttgcaa aaagagttaa acaatctgat gaaagaaaat acagaagaaa
     2401 agcaaaaaac ttattggaca aaaacgtttg atcgcatcgt gaaaaagaaa aaatgggcgg
     2461 aaattacagt tcgtgaattc gctgatttac gtaacgcagg actaacatgt tacgcaattg
     2521 cagagcattt caaagtgtcg aagtcaacag ttttaaatta tacgcaaaga aataaaaaag
     2581 aatactatca aatttttgac atgaacgaat atcaacggaa taaggagata tggaatgatt
     2641 gataaagtag cgaaatttat aggagctttg actatttacg ctttatgggt cctagtatta
     2701 atttttgtac taggattagc agttaaaggg attctatggg cttggag
//
LOCUS       DASDXX010000247         2703 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.248, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000247 DASDXX010000000
VERSION     DASDXX010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.248"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..310
                     /locus_tag="U0280_002715"
     CDS             <1..310
                     /locus_tag="U0280_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HEM2272635.1"
                     /translation="AGIEAKRLLKRKQALENNVQNLKNYLQTEMERMEIRKINSTLFT
                     IQIQKNPPSVEIVEEALLKSFFLLQEPKIDKKRIAEILKSGEEVKGARLVESESIRIR
                     "
     gene            503..>2703
                     /locus_tag="U0280_002716"
     CDS             503..>2703
                     /locus_tag="U0280_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEM2272636.1"
                     /translation="MSHLKKLVSILICTLLIVSFLPFSVWANSQERDGTDVEEITTKE
                     KVTQETTSNETTSEPLKETTVNEAINTKSFPTGNYSGDFSINSQKDVIESGQTVNYNI
                     YLKITGPNTTYQNAKLVINLPKNGEFNQSLNELKIAGETPSYNKTTRQLVYTYQTLNS
                     GVVDKVILKLTTKNGYTPNGTKLVVTGELSADNLLGKVTEQAETTVNATATTALSNDF
                     ARVENSINNNPSQGDIGIWSFNLNIPKKSTGSLFMEEGKKIVIEYILADKLDYLGVAG
                     DTPEPTKVEGQKLTWEIAAPTYLEQEKANSLLNKTFQIRTFFQTTIPNFATVENKAVA
                     TTNFVTLADSIVDTSKASVSVSASDPATIPPTIGSVYAPAHRGPVDANWGIATVTGNP
                     DIKAYDTAKLGFSLMLNSAMNDSPSYDFLYYDAYYNIDDNLNLDYFQSGDFYFKPNVN
                     YPGWAQLKKSPKYNLLVKYDGDSDWTTLKEDVELSKMYSRKDLGIPDDKHVSKVWLHF
                     TYAPAGMYAANLSFFTTVKEGYVGEVRNSTQINMYGADSQGYIHYYDDTNPWPEAWKN
                     YAGDRTAQIIPQPTGKNKFVQGSVAFDDTDGNLINIGDNSISVNLESNKASISRLKGP
                     FEAVVLLPSGVKMKKTEQNDFNVTVLNENYQNAGRQLLKVKWDKKTLLPAEKLTAKIN
                     VSVAKDTPSNMTVEMFGFLQETDFNVPEVTGTPTISDTKMEIDSDDINQNG"
BASE COUNT         1008 a          433 c          526 g          736 t
ORIGIN      
        1 ggcgggaata gaagcgaaac gacttttaaa acgaaaacaa gcactagaaa ataatgttca
       61 aaatttaaaa aactatttac aaacagagat ggaacgaatg gaaattagaa aaataaacag
      121 tacacttttt acaattcaaa tacaaaagaa tccaccaagt gtggaaatag tggaagaagc
      181 tttgctaaaa tcgttctttt tactacaaga acctaaaatt gataaaaagc gaattgcaga
      241 gatactaaaa tctggtgagg aagtaaaggg tgctagatta gttgaaagcg aatcgattcg
      301 aataagataa ataaaacaac caaaatcgtt gaattcttca acaattttgg ttgttttttg
      361 ttaataatga catttttgcg actataaacg taaaatagtt cacattttcg taacaaactg
      421 tcctattttt tgtaccttga gaacatttag ctgcttcctc ctatgaaata attaatcttg
      481 agtaaacaaa ggaggggcga atgtgagtca tttgaaaaaa ttagtatcta tattaatttg
      541 tactttgctg atagtttcat ttcttccatt ttcagtttgg gcaaatagtc aagaaaggga
      601 tggaacggac gtagaagaaa taactacgaa agaaaaggtt acgcaggaaa cgacttcaaa
      661 tgaaactact tcagagcctt taaaagagac cacagtcaat gaagcaataa acacaaaatc
      721 atttccaact gggaattatt caggggactt tagtattaat tctcaaaaag atgtgattga
      781 atctggtcag acggtaaact ataacattta tttaaaaatt actggaccaa acacaacata
      841 ccaaaatgct aaattagtaa tcaatttacc aaaaaatggg gaatttaatc aatcattaaa
      901 tgaacttaag attgcgggag aaacgccaag ttataacaaa acaactcgtc agctcgttta
      961 cacatatcaa acactgaaca gtggtgtagt tgataaagtg attcttaagc tgactacgaa
     1021 aaatggctac acaccaaatg gaacgaaatt agtagtaaca ggtgaattaa gtgcagataa
     1081 tttacttgga aaagtaaccg aacaggctga aacaactgtc aacgcaacag ccacaacagc
     1141 tttatcaaat gattttgcta gggtagaaaa tagcatcaac aataatccga gtcaaggtga
     1201 tatcgggatt tggtctttca acctaaatat tccgaaaaag tctacaggaa gcctttttat
     1261 ggaagaaggt aagaagattg ttattgagta tatattggca gataagctag attacttagg
     1321 tgtagcagga gatacaccag aaccaacgaa ggtcgaagga caaaaactaa cttgggaaat
     1381 tgcagcacct acatatttgg aacaagaaaa agcaaacagt ttacttaaca agactttcca
     1441 aattagaacg ttcttccaaa ctactatacc aaattttgca acggtggaaa ataaagctgt
     1501 tgcaacaacg aactttgtta ctttggctga tagcattgta gatacatcca aagcatctgt
     1561 ttcagtttca gcaagtgacc cagcgacaat cccgccaact attggaagtg tttatgctcc
     1621 agcacacaga ggcccggtgg atgcgaattg gggaatcgct actgtgaccg gaaatcctga
     1681 tataaaagca tatgatactg ctaaattagg ctttagtttg atgttaaatt cggcgatgaa
     1741 tgattcacct tcgtacgact tcctttatta tgatgcttac tacaatatag atgataattt
     1801 aaatttggat tacttccaga gcggcgattt ttactttaaa ccaaatgtta attaccctgg
     1861 ttgggcgcaa ctaaagaaat cacctaagta taatttactc gtgaaatatg atggtgatag
     1921 cgactggacg acactaaaag aagatgtaga actgagcaaa atgtattcga gaaaagatct
     1981 tgggattcca gatgataagc acgtgagtaa agtatggctt catttcacgt atgctccagc
     2041 tggaatgtat gctgctaatc tatctttctt tacaacagtc aaagaaggtt atgtaggtga
     2101 ggttagaaat agtacacaaa tcaacatgta cggagcggat agtcaaggct atatccatta
     2161 ttatgacgat acaaatcctt ggccggaagc ttggaaaaat tatgcaggag accgaacagc
     2221 gcaaataatt ccgcaaccta ctggtaaaaa taaatttgta caaggatcag ttgcgtttga
     2281 tgataccgat gggaatttaa tcaacatagg tgataattct atttctgtta atttagaaag
     2341 caataaagct tctatttcac gattaaaagg tccttttgaa gcagtggttt tgttaccttc
     2401 aggggtcaaa atgaaaaaaa cggagcaaaa cgactttaat gtaacagtgt tgaacgagaa
     2461 ttaccaaaac gcagggcgtc aattactaaa agtcaaatgg gataaaaaga cgcttttgcc
     2521 agcagaaaaa ttaacggcaa aaattaatgt gagtgttgca aaagacacac ctagtaatat
     2581 gactgttgag atgtttggtt tcttgcagga gacagatttt aatgtgccgg aagtgactgg
     2641 aactccaacc atttctgata caaaaatgga aattgactca gatgacatta atcaaaatgg
     2701 gaa
//
LOCUS       DASDXX010000248         2679 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.249, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000248 DASDXX010000000
VERSION     DASDXX010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.249"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1955)
                     /locus_tag="U0280_002717"
     CDS             complement(<1..1955)
                     /locus_tag="U0280_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol:glycerophosphate
                     glycerophosphotransferase"
                     /protein_id="HEM2272637.1"
                     /translation="MNSDSNNNINKNREAGISIIIPLYNVEEVILETLESIHEQTFDM
                     YEVLLIDDGSTDKTIEMVTEYISDKPKFQLHTQPNGGPASARNYGLRLANRMYICFVD
                     SDDIIPNYALQLMYDGAISTGSKLITGATKRFNSEGEWFIPMHIQYNIAKPGMKTLLK
                     NPELFYSIGPCAKLYHHSLIDGVFFPENIRYGEDQPFVLHALLQAENIYTVEKVVYYY
                     RLRDGESQSLTQSVNKDPIRILKSVFQIFDYGEAELLKNNTEYEIALKYYQRVSSVEL
                     WGALRAAIESKKSENQQIAFTMTLDWLKTKSDDFLNIIPSFRYFLLFSSIERVRYITR
                     DNKENYRQLITYLWERQGEEAKIAFRKAYPIHMKAALQIMEHNNWGAARKISFKFIIR
                     RKFKAPILIRKISRGIIFRLATLMPRKKDQVILATERSTSLEGNLLAIYDYLFYNDMP
                     QKVYVFLRKNRNWFEMFQLYYALGRTKTIVLDDYYNKIYGLKFNKKTHVVQSWHATGA
                     FKKFGFSALEGTDANTEEFETRAHSPYTDVLVSSEGIIPEYMEAFRKQANQIKPIGVP
                     RTDVFFDQEYVAYTKEKYMKMYPQLRDKKVLLYAPTFRGGPNERFNYSVVLDIAALKK
                     ELGDTHILILKFHPVIKNVSFNVDENDP"
     gene            complement(1986..>2679)
                     /locus_tag="U0280_002718"
     CDS             complement(1986..>2679)
                     /locus_tag="U0280_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272638.1"
                     /translation="VETLYTKKFDLKKGLRKGFLIASFCVFLLSTVAFAFIGNSVAGE
                     SQDINKYLVKQSYAHIDLPVTSKQIVKQTFNVDSPFNSIQIAVLKEPDEASKYRLKVV
                     DKTNKKDIYDEVIAGSDFVEATNYQINVNEKPKGKTEYVIEVYQVENKNPEKPLVLGT
                     YTPDAVDLYPYGALYVNGVKKEKQDMGFTVSHVASEPIIPKYVSAIFDLGVIIIFAGT
                     YYVFRRKTGDNR"
BASE COUNT          833 a          507 c          394 g          945 t
ORIGIN      
        1 ggatcatttt catccacatt aaatgaaacg ttcttaataa caggatggaa ttttaaaatt
       61 aaaatatgtg tatcaccaag ttcttttttc aaagcagcaa tatcaagtac aacgctataa
      121 ttaaagcgtt catttggccc accgcggaaa gttggcgcat atagcaacac ttttttgtcg
      181 cgaagttgcg gatacatttt catatatttt tcttttgtat atgccacata ttcttgatca
      241 aaaaacacat ctgttctagg cacaccaata ggtttaattt gattagcttg ttttctaaaa
      301 gcttccatat attcaggaat tatgccttct gaactaacaa gaacatctgt gtaaggcgaa
      361 tgagcacgtg tctcaaattc ttctgtatta gcatctgtac cttcaagcgc actaaagcca
      421 aactttttga aagcccctgt cgcatgccat gattgtacca catgtgtctt tttattaaat
      481 ttcaaaccat aaattttgtt gtaataatca tctaatacaa ttgttttagt tcgccctaat
      541 gcataataca attggaacat ttcaaaccaa ttacgatttt tccgtaaaaa cacatagact
      601 ttttgtggca tatcattata aaacaggtaa tcataaatgg ctaataaatt tccttctaag
      661 cttgtactac gttctgtagc taaaataact tggtcttttt tgcgtggcat caaagtagct
      721 agtctaaata taatgcctct gcttattttc cgaattagaa taggcgcctt aaatttacga
      781 cggataataa atttaaagga gattttacga gcggctcccc aattattatg ttccataatt
      841 tgtaaagcag ctttcatatg gataggatat gcttttctaa atgcaatttt tgcttcttcc
      901 ccttgtctct cccacaaata cgtaattagt tggcgatagt tttctttatt gtctcttgta
      961 atatagcgaa cacgttcgat actactgaac aacaagaaat atctaaagga aggaattata
     1021 tttaggaagt catctgattt ggtttttaac cagtctaatg tcatcgtaaa agcaatttgt
     1081 tggttttcac ttttcttact ttcaatagcc gcccttaaag cgccccaaag ctcaacacta
     1141 gatactcgtt gataatattt taaagctatt tcatattccg tattattttt gagtaactct
     1201 gcttccccgt agtcaaatat ttgaaaaaca gattttaaaa tacgaattgg atctttattt
     1261 acagattgcg ttaatgattg cgattcacca tcacgtaagc ggtaataata aactactttt
     1321 tctacagtat agatattttc tgcttgaagt aaagcatgca aaacaaatgg ttgatcttca
     1381 ccgtaacgaa tattttcagg gaaaaacaca ccatctatca aagaatgatg atagagtttc
     1441 gcacaaggac ctatcgaata aaatagctcg ggatttttca gtagtgtttt cattcctggc
     1501 ttggcaatat tatattggat atgcatcgga atgaaccatt caccttctga attaaagcgt
     1561 ttcgttgcac ctgtaatcaa ttttgaacca gtggatattg caccgtcata cattagttga
     1621 agtgcatagt tcggaataat atcatcactg tccacaaagc aaatatacat tctattcgca
     1681 agacgcaacc cataattcct agccgaagct ggtccaccat ttggttgagt atgcaactga
     1741 aattttggct tatctgatat atattctgtc accatttcta ttgttttatc cgttgaacca
     1801 tcgtcaatta ataaaacttc gtacatgtca aatgtttgct catggatgct ttcgagcgtt
     1861 tccaggatta cttcctccac attatataat ggaataataa tacttattcc cgcttctcga
     1921 ttcttattga tgttattatt tgaatcactg ttcatttata gactctccct aattcaaaat
     1981 atatgtcatc tattatctcc agttttcctt ctaaacacat aatatgttcc tgcaaaaata
     2041 attataacac ccaaatcaaa aatagcggag acatatttcg gtattattgg ttcagaagca
     2101 acatgtgaga cagtgaagcc catatcttgc ttctcttttt taacaccatt aacatacagt
     2161 gctccatacg gataaagatc tactgcatct ggagtatagg tacctaaaac taatggtttt
     2221 tcagggtttt tattttccac ttgatagact tcaataacat attcagtttt accttttggc
     2281 ttttcattta cattaatttg gtaatttgta gcttctacaa aatctgatcc agctataact
     2341 tcatcgtaaa tatccttctt atttgtctta tctacaactt tcaaacgata tttactagct
     2401 tcatctggct cttttagaac cgctatttgg atagaattga acggcgaatc tacattaaac
     2461 gtttgcttaa caatttgttt gctagtaaca ggaagatcta tatgcgcata actttgtttt
     2521 acaagatatt tattgatatc ctgtgactcg cctgctaccg aatttccaat aaaagcaaaa
     2581 gcaactgtac ttaataaaaa tacgcagaaa ctcgcgatta aaaagccttt tcttagccct
     2641 tttttcaaat caaatttttt cgtatataaa gtttctact
//
LOCUS       DASDXX010000249         2678 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.250, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000249 DASDXX010000000
VERSION     DASDXX010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.250"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            122..943
                     /locus_tag="U0280_002719"
     CDS             122..943
                     /locus_tag="U0280_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272639.1"
                     /translation="MLKRVFFSIILPLGCLVGAIFILLTINTTYPKAANESIPTIFIH
                     GYRGTDRSLHGMIRRFDQKYDWGTESLTVNVSPDGKISTTGTYNKKEKNPLINIVFED
                     NRATLPQQSMWTKKVMSYLQQNYAIKKFNAVGHSMGGGAWVSYLASYEKNKSYPQVNK
                     IVFLAVPFYPEEYVNGDQQVDIKNANNVHAKFAEKMAKVLPNNTEIMIIGGNLEDGSN
                     SDGEVKLDSVLYGEKLFAHQKVTTHVIKGPQATHSSMHESTVVDKYVGQFLWGEK"
     gene            964..1863
                     /locus_tag="U0280_002720"
     CDS             964..1863
                     /locus_tag="U0280_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272640.1"
                     /translation="MKKVISLIIALAIIITGFWIIFLQFEPTKKEAKEPAVTANKTTK
                     KEQKPVSEIAIPTLFVHGYSGTINSFGGMINRLAEDGDVTKSLVMNVAADGTVSSDGN
                     YDKFSHNPTIQVIFEDNKSSAANQTQWIQNVMKELKNNYHIEKVYAVGHSMGGVSLTS
                     YIEKVGSDKTYPVLEKLVLIGAPLNGLVIGDDGVTAYDLTDSGPKKSSDRYSEFMKNK
                     QKIPTNLHVLNIAGDTLNGTKSDGSVSVASALSGKFIFEGQAASYEEKTFTGKNAAHS
                     KLHENTDVDAEVADFLWGIEKVD"
     gene            complement(1873..>2678)
                     /locus_tag="U0280_002721"
     CDS             complement(1873..>2678)
                     /locus_tag="U0280_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2272641.1"
                     /translation="HFLPILINQISQLVDSLVKLYNNPSDNTIVKWIVGFLKESNIQK
                     YLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTSFTGQFMTSKVGFIFKE
                     AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLLSLSIMVFVLGLIPVA
                     GVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLPVFYTFI
                     ILIFSETFFGVWGLIVGIPVFVFLLDILEVRNAEDLKKRTIFGRKKKVD"
BASE COUNT          973 a          435 c          479 g          791 t
ORIGIN      
        1 tatactatat gtgttcatga gatgaaacca ttaaattagt agaaaaagta gaccaatcgt
       61 gcgttttcta taaaaaaaat gtataatttg ttcataacga attttaaagg ggcgtaaaat
      121 aatgctaaag cgcgtgttct tctccattat cttaccatta ggttgtttag ttggagcaat
      181 ttttatttta ctgacgatta acacgactta tccaaaagca gccaatgaat ccatccctac
      241 catttttata catggttatc gtgggacaga ccgctcgctt cacggaatga tacgtcgctt
      301 tgaccaaaag tatgattggg gtacagagtc attgaccgta aatgtaagcc cagatggaaa
      361 aatttctact actggaactt ataacaaaaa agaaaaaaat ccacttatca acattgtttt
      421 tgaagataat cgagcaacgc ttcctcaaca atcaatgtgg acaaaaaagg taatgtctta
      481 tttacaacaa aattatgcca taaaaaaatt taatgcagta ggtcattcaa tgggtggcgg
      541 tgcttgggtt tcttatttag ctagttacga gaaaaacaag tcctatccac aagtaaataa
      601 aattgtgttt cttgcagttc cattttatcc ggaagaatat gtgaatggcg atcagcaggt
      661 tgatattaaa aatgccaata atgtgcatgc taaatttgct gagaaaatgg ccaaagtttt
      721 acccaacaat actgaaatta tgattattgg tggtaatttg gaagatggtt caaatagtga
      781 tggtgaagtg aaattagata gtgttttata tggtgaaaaa ttatttgcac atcaaaaggt
      841 aacgacacat gtcattaaag gaccacaagc tactcatagt agtatgcatg aatctactgt
      901 agtggataag tatgttggtc aatttttatg gggcgagaaa taaacgatta aaggatgttt
      961 gaaatgaaaa aagttattag tttaattatc gcattagcca ttatcattac tggcttttgg
     1021 ataatttttc ttcaatttga gccgactaaa aaagaagcta aagagcctgc tgtgacagca
     1081 aataaaacaa caaaaaaaga acaaaaacct gtttcagaaa tagcaatccc tactctgttt
     1141 gttcatgggt attctggaac aattaattca ttcggaggta tgattaatcg tcttgctgaa
     1201 gacggggatg taacaaaatc acttgttatg aatgttgcag ctgatgggac tgtaagctct
     1261 gatggaaact atgataagtt tagtcataac cctactattc aagttatttt tgaagataat
     1321 aaaagctcag cggcaaatca aacacaatgg attcaaaatg tcatgaaaga attaaaaaat
     1381 aattatcata tcgaaaaagt atacgcagtt ggtcattcca tgggtggcgt tagtttaaca
     1441 agttacattg aaaaagtagg tagtgataaa acttatcctg ttcttgaaaa acttgtttta
     1501 atcggtgctc cacttaatgg actagtaatt ggtgatgatg gtgttacagc ttacgacctt
     1561 acagattcag ggccaaaaaa atcttcagac cgttatagtg aattcatgaa aaacaaacaa
     1621 aaaatcccta ctaatttgca cgtattaaat attgcaggtg atactttaaa cggaacaaaa
     1681 agcgatggta gcgtttctgt tgcgagcgcc ttatctggca aattcatttt tgaaggccag
     1741 gcagcaagtt acgaagaaaa aacattcaca ggtaagaatg cagctcatag taaactccac
     1801 gaaaataccg atgttgatgc tgaagtagct gactttttat ggggaataga aaaagtagat
     1861 taaggctatc gcctaatcta cttttttctt gcgtccaaat attgttcgtt tttttaagtc
     1921 ttctgcattt ctcacttcta aaatatctaa taagaataca aagactggaa ttcctacgat
     1981 tagcccccac actccaaaga atgtttccga gaaaatcaaa ataataaatg tgtaaaatac
     2041 cggtaagttc gttttagatg acattaattt tggatttaaa atgtaggtct ctattgcatg
     2101 aacaatgaca acggtaatta aaatgtacac cacatcttga aatcctccaa cagaataagc
     2161 tataagcacc agtggaatac aggaaataat cacccccgca acggggatta atcctaagac
     2221 gaaaaccata atggataaac taagcaactg tggaaagtcc attaaataaa gcgcgattgt
     2281 cgtaataaat gtgtttacta aagcgatcat taattgcgcc tctaaaacga ctccaaaagt
     2341 cgaaacaaat ttctttccaa aaaatgcagc ctctttaaaa ataaagccta ccttacttgt
     2401 catgaactgc ccagtaaaag aagttactcg ttctttttcc aaagagaaaa ataaactaag
     2461 aattaatgct aagaagaaag ataatccgac agatccaata ccggatagtg aagcaataat
     2521 aaaatcgacc ccagcttgca aatatttctg tatgttagat tcttttaaaa acccaacaat
     2581 ccacttcaca atcgtattgt cacttggatt attgtaaagt ttcacaagag aatctactaa
     2641 ttgagaaatt tgattaatta aaattggtaa gaaatgca
//
LOCUS       DASDXX010000250         2631 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.251, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000250 DASDXX010000000
VERSION     DASDXX010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.251"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            274..1086
                     /locus_tag="U0280_002722"
     CDS             274..1086
                     /locus_tag="U0280_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2272642.1"
                     /translation="MKRILNYPGSKWSLADLIIDNMPEHKSYLEPFCGSCAVFMNKQK
                     ATLETINDLDSRLVNLFKAMRDNPEKLQYLIMHTLYSREEYMLSHEISSDSLEDARRM
                     AVRLWFAVGGKTNANVGFRKNVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAI
                     KLIEQHNDKDTLIYCDPPYIPTSLVSPHYQHDFSLEQHKELLKVLKNHEGKVMLSGYE
                     SELYKQELSDWPALKTMTKVGITSEKKSDRQEIIWCNFEPPMQLNLFKEEQA"
     gene            1083..1688
                     /locus_tag="U0280_002723"
     CDS             1083..1688
                     /locus_tag="U0280_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM2272643.1"
                     /translation="MKFRKGDKVEFIWSGKLKQGVVTEIEETKNAISYQIKYSGDMGM
                     TWLDERDLIAPAQVLKVPQFVADWIEQRDAKGDDLYTAMDKSWQSMNYKVIDWLEEGE
                     DRYNKFARAWLDGYEVEKEPLYYVRLPLSTWNDDAAELEVINMYVLLNIQSDETTFTG
                     SIINKNKKWKTKLTEAEIKGMPGGDIYWQFAVPVEEVEGEA"
     gene            1685..1861
                     /locus_tag="U0280_002724"
     CDS             1685..1861
                     /locus_tag="U0280_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272644.1"
                     /translation="MTVAELIEALNRHDKHLPVFIGTSLLCEVEKDSLCNEVIDVPVL
                     FLKTAIEVQWHESD"
     gene            1848..2216
                     /locus_tag="U0280_002725"
     CDS             1848..2216
                     /locus_tag="U0280_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272645.1"
                     /translation="MRAIKFKGKRKDNGKWAHGYFVIDDCDCAYIINVENDGYSAIPI
                     IKTCYEVDAETVVCAGEQESKQLVRLLETARKLEIKKNEDNVHPGRISKEKEAWIEGL
                     EFATNIAIDFFKVRKEWAEK"
     gene            2213..2623
                     /locus_tag="U0280_002726"
     CDS             2213..2623
                     /locus_tag="U0280_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272646.1"
                     /translation="MREIEFRGKAIHPNSLEQIVGSWAYGGIFENKIISRNLDMDSHY
                     HGFISEIEIDLKTIGQYTGLKDKNGKKIFEGDIVDISVYDRLDWSSIKGKVVFLNGAW
                     LVEDVGHFAITLQSETNEIEIIGNVHENLGLWEA"
BASE COUNT          950 a          378 c          612 g          691 t
ORIGIN      
        1 gaaatattat tggcatgtgt caaggcttgg tgggaaaccg acagaaattc gacactataa
       61 gcacattaca aaaatgtata aatttatttt gcgaaatcct gctatgttca aagacaaaac
      121 tttaacgatt tatgatcacg caaaaccagt tacaaacatg acgtttaacg aaattaagta
      181 tagagctagt ttgaatttat gtgaaacggt agaacgaaag tatgtgttag gacttaagca
      241 aaggcttacg gaggaacaga aggaggctag aaagtgaaac gaatacttaa ttatccgggc
      301 agtaaatgga gtttggcaga tttaatcatt gataatatgc cggagcataa aagttattta
      361 gaaccattct gcggatcatg cgcagtcttt atgaacaagc aaaaagctac tttagagacg
      421 ataaacgatt tagacagtcg actagttaat ctttttaaag caatgcgtga taatccagaa
      481 aaactgcagt atttaattat gcacacgctg tattctcgtg aagagtatat gctttcgcat
      541 gaaatatcaa gtgattcatt agaagacgct agacgcatgg ctgtgaggct ctggtttgct
      601 gttggtggta agaccaatgc aaatgttgga tttagaaaaa acgtgtcttg gaatggtcct
      661 tacaacgcat atgaatggaa tgacatgtat aaccgaattg gaatagctgc agcaagactg
      721 aaagacgctc aaatcgaaaa tgtagatgca attaaactga ttgaacagca taacgataaa
      781 gatacactga tatattgtga cccgccatat attccgacat cgctagtaag tccacattat
      841 cagcacgatt ttagtttaga acaacataaa gagttactca aagtgcttaa aaatcatgag
      901 ggcaaagtaa tgttaagcgg ctatgaatca gaactatata aacaagagtt atcagactgg
      961 ccagctctta aaacaatgac aaaagtaggc attacatcag aaaagaaatc agataggcaa
     1021 gaaattattt ggtgcaattt tgagccacct atgcaattaa atctttttaa ggaggaacaa
     1081 gcatgaaatt tagaaaaggc gataaagtag agtttatttg gtcaggtaaa ttgaaacaag
     1141 gtgttgtaac tgaaatagaa gaaactaaaa atgctatatc ctaccaaatt aaatatagtg
     1201 gagacatggg catgacttgg ctggatgaaa gggatttgat tgcgccagct caagttttaa
     1261 aagtcccgca atttgttgct gattggattg agcagagaga tgcaaagggt gacgatttat
     1321 acaccgcaat ggacaaaagc tggcagagca tgaactataa agtaatcgac tggctagaag
     1381 agggagaaga cagatacaac aaattcgcac gcgcttggct agacggctac gaagtcgaga
     1441 aggaaccgct ttattatgta agattgccgc tttcaacatg gaacgatgac gcagccgaat
     1501 tagaagtgat taatatgtat gttttgttaa atatacaatc tgatgaaaca acttttactg
     1561 gatcaattat caataaaaat aagaaatgga aaaccaaatt aacagaagcg gaaattaaag
     1621 gcatgcccgg aggagacata tattggcagt ttgctgttcc tgttgaggaa gtggagggtg
     1681 aagcatgaca gtagcagaat taatcgaagc actgaataga cacgacaaac acttgcctgt
     1741 tttcatagga acttcacttt tatgtgaggt tgaaaaggat tcgttatgta atgaggtcat
     1801 tgacgtgccc gtgttgtttt taaaaactgc aatagaggtg caatggcatg agagcgatta
     1861 aattcaaagg aaagcgcaaa gacaacggca aatgggcgca cggatacttt gtcatagatg
     1921 actgtgattg tgcatatatt ataaacgttg agaacgacgg atatagcgct attccgataa
     1981 tcaagacgtg ttatgaggtt gatgctgaaa ctgtcgtgtg cgcaggagaa caagaaagca
     2041 aacaactagt aagactttta gaaacagcta gaaagttaga gattaagaaa aacgaagata
     2101 atgtacatcc tggtcggata tcgaaagaaa aagaggcgtg gattgaaggc ctagaatttg
     2161 cgacaaatat tgcaattgac tttttcaagg tgcgaaagga gtgggcagag aaatgagaga
     2221 gattgagttt agagggaaag cgattcatcc aaacagtctt gaacaaattg taggcagttg
     2281 ggcatatgga gggatatttg aaaataaaat tatttctaga aatttagata tggatagcca
     2341 ttatcatggg tttatttcgg aaattgaaat tgacttaaaa accatcggtc aatacacagg
     2401 tttaaaggac aaaaacggca agaagatttt tgaaggggat atagtcgata ttagtgttta
     2461 tgatcgtctt gattggagct caataaaagg caaggttgta tttttgaatg gcgcgtggct
     2521 agttgaggat gtagggcatt ttgcgataac tctgcaatct gaaacaaatg aaatcgaaat
     2581 tatcggtaat gtgcacgaaa atttaggatt gtgggaggca tagtaaatga c
//
LOCUS       DASDXX010000251         2630 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.252, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000251 DASDXX010000000
VERSION     DASDXX010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.252"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            101..1114
                     /locus_tag="U0280_002727"
     CDS             101..1114
                     /locus_tag="U0280_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEM2272647.1"
                     /translation="MFGFGNKDIGIDLGTANTLVYMKGKGIVLREPSVVAMKKDTQEI
                     VAVGSDAKNMIGRTPGNIVAIRPMKDGVIADYDTTAAMMKYYIQKAGKSVNASKPRVM
                     ICVPSGITGVEKRAVIDATRQAGAKDAFTIEEPFAAAIGAGLPVGEPTGSMVVDIGGG
                     TTEVAVISLGGIVTSRSVRTAGDDLDEVIINYIRKKYNLLIGDRTAEAIKMEIGSASP
                     NGLDLSPFSIRGRDLVTGLPKTIEITPEEISGALADTVAAIIDAVKGTLENTPPELSA
                     DIMDKGIVLTGGGALLRNLDTVISEETKMPVIIADEPLDCVAIGTGKALENMDMYKRK
                     KMN"
     gene            1200..2087
                     /gene="mreC"
                     /locus_tag="U0280_002728"
     CDS             1200..2087
                     /gene="mreC"
                     /locus_tag="U0280_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEM2272648.1"
                     /translation="MPQFFLNKRLIILLISIIVLVALVGFSLRDRENASWPEQFVKDV
                     VGFGENIVAKPTSFISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKD
                     LKESLDITDSIRDYDPLNASVISRNPTNWNDQVEIDKGSSDGVKPDMAVTTPSGLIGK
                     VTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYDMKF
                     KKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGADMYDLNHVTVLKRS
                     AEAGTTDDDTTSSDTTGGQ"
     gene            2090..2608
                     /gene="mreD"
                     /locus_tag="U0280_002729"
     CDS             2090..2608
                     /gene="mreD"
                     /locus_tag="U0280_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEM2272649.1"
                     /translation="MNVKKNIALPAIMVGTFILEGVFSLQFANGLFNDRHLFIPHFLL
                     IMLTIMTCFYKRNTTLAYAFILGLLFDIYYTGVMGIYFAIFPFTVYITDKFMKVLQNN
                     ILLVGLIAIFNIILTESLVYAFYYLIGTTTMSIPVFIDQRLWTTILINLAFFLVVFFP
                     FRLFLDRLVKSE"
BASE COUNT          863 a          381 c          550 g          836 t
ORIGIN      
        1 gaaacattga cacaaaggga taaggtaaca ttaatttaat ggacgaataa ggaaacttaa
       61 tgtatcctgt agaatattac gaaggaaaag gagaatacag atgtttggat ttggtaataa
      121 agatattgga attgatttag gaacagcgaa cacacttgtc tatatgaagg gaaaaggtat
      181 tgtccttcgt gaaccttccg ttgtagcaat gaaaaaagac actcaagaaa tagttgcagt
      241 tggtagcgat gcaaaaaata tgattggtag aacaccagga aatatcgttg caattcgtcc
      301 aatgaaagat ggtgttattg ctgattatga tacaactgca gcaatgatga agtattacat
      361 acaaaaagct ggtaaaagtg ttaatgcaag taaaccacgc gtaatgatat gtgtaccttc
      421 tggaattaca ggtgtagaaa aacgtgctgt tattgatgcg actcgtcaag caggagctaa
      481 agatgcattt acaattgaag agccatttgc tgcggctatt ggtgctgggc ttccagttgg
      541 cgagcctaca ggtagcatgg ttgtagatat tggtggagga actacagaag ttgctgttat
      601 ttctctaggt ggtattgtaa ccagtcgctc tgtaagaact gctggtgatg atttagatga
      661 agttatcatt aattacattc gtaaaaaata taatctatta attggtgatc gtactgccga
      721 agcaatcaaa atggaaattg gctcagctag tccaaatggt ttggacttat ctccatttag
      781 cattcgagga cgtgatttag taactggact tcctaaaact attgaaatta ctccagaaga
      841 aattagcgga gcacttgctg atacagtagc agcgattatt gatgctgtaa aaggaacact
      901 tgaaaataca ccaccagaat tgtcagctga tattatggat aaaggtattg tactcacagg
      961 tgggggagct cttttacgta atttagatac agttatttcc gaagaaacaa aaatgcctgt
     1021 tattattgca gatgaaccac ttgattgtgt tgcaattgga acagggaaag ctttggaaaa
     1081 tatggatatg tataaacgca aaaaaatgaa ctaaatggac acgctcattt atgtcatata
     1141 acaagatgaa ttagcttcaa aaaaatggaa aaagagtact aacgagatga ggtgtcgtta
     1201 tgccacaatt ttttctcaat aaacgtttga ttatcttgtt aatatctatt attgttctcg
     1261 tcgcgctagt tggtttttct ttacgtgatc gtgagaatgc ttcgtggcca gaacaatttg
     1321 tgaaagatgt tgttggattt ggcgaaaata tagtagctaa gcctacttca tttatctcag
     1381 gtgcagttga tggagtggtt gatttaaaaa acacttatac tgaaaaccaa catctaaaag
     1441 aacgtttaga agaattggca caacttgaaa gtgaagttgc agacttaaaa aaagaaaata
     1501 aagatttaaa agaaagtctt gatattacgg atagtattcg tgactacgat ccacttaatg
     1561 cttctgttat ttctagaaat cctactaatt ggaatgatca agtagaaatc gacaaaggtt
     1621 caagtgatgg agtaaaaccg gatatggcag ttacaacacc aagtggtctt attggtaaag
     1681 taacaacgac aggcgctaaa tcagctacgg ttgaattatt aacttcgtcg gatgttaaaa
     1741 accgtgtttc tgctaaagtg cagggcaagg aaaatgcatt cgggattatc aatggttatg
     1801 acagtgatac taagttatta gaattaaaac aattaccgta tgacatgaaa tttaaaaaag
     1861 gacagaaagt tgttacttct ggactcggtg gaaaattccc agcaggtatc tttatcggta
     1921 caattgaaaa agtagaaact gataaaatgg gattatctca aaccgcgttt attaagccag
     1981 gtgctgacat gtatgatcta aatcatgtta ctgtgttgaa gcgttcagcg gaagcaggga
     2041 caacggatga cgatacaact agttcagaca cgactggagg acaataatca tgaacgttaa
     2101 gaaaaacatt gcacttcctg caatcatggt tggaaccttt attcttgagg gtgtttttag
     2161 tcttcagttt gcgaatggtc tgtttaatga tagacatctt tttattccac attttttact
     2221 tattatgttg acgattatga cttgttttta taaacgaaat acgactttag catatgcttt
     2281 tattctaggc ttgctgtttg atatttatta tactggcgtg atgggcattt attttgctat
     2341 cttcccgttt acagtgtata tcacagataa atttatgaaa gtgttgcaaa ataatatact
     2401 tttggttggg ttaattgcga tatttaatat tattcttaca gaaagtttag tatatgcgtt
     2461 ttattatttg attggtacga caaccatgtc tatcccagtt tttattgatc agcgtttatg
     2521 gacaaccatt ttgattaatt tagcattctt tttagttgtc tttttcccat tccgattgtt
     2581 tcttgatcgt ttggttaaat cagaataact atcgtaattt taacagtttg
//
LOCUS       DASDXX010000252         2627 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.253, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000252 DASDXX010000000
VERSION     DASDXX010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.253"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..739
                     /locus_tag="U0280_002730"
     CDS             <1..739
                     /locus_tag="U0280_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2272650.1"
                     /translation="EELKLLENKKTISQEELMQIFSISKDTARRDILKLVESGLAERY
                     PGGVSLPVLKPQIESYTSRLVKQSEQKKKIAYAAGKVIKDHMTIYLDVSTTVHFLASN
                     LEQHDLVVVTNSMDNAIAASQKEANKVYLLGGFFNFHSRVLSGEPVLGQLQQFNFDVA
                     FIGGAGLTEDGIFYSELTDVYMKQEIIRNSEKVFLLIDSTKVNKKTASKIDFSGIDAV
                     ITDQPLPKDLMQCLISKEVEVISLKGL"
     gene            745..1878
                     /gene="nagA"
                     /locus_tag="U0280_002731"
     CDS             745..1878
                     /gene="nagA"
                     /locus_tag="U0280_002731"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM2272651.1"
                     /translation="MAVIKNVKIYKENELIDAAVITEGNLIKEVCSTTPEKYSDEPTF
                     DGNGQLLIPGMIDVHIHGANNYDMMDGSTESIQAVSMACAETGCTSFLVTSVSSSFED
                     LIQMIKQTKKVIGKEKGAKIAGIHLEGPYLNIEKKGMQNPAYLRHPDLKEMKKIFDEA
                     DGLIKMVTIAPELPRGIELIDFLKKRGVVVAIAHSNATYEEAQNAFEQGATHITHCFN
                     AMPAIHHRAPGLVTAALENDSVSVQTIVDGVHLHPGIVRLIHKIKGPDKMVLTTDALQ
                     AMGVGDGEYIFGGHQVTVKEGIARLKDGTLASSTVTMNKSLKLSNEFGIHLQDAIQMA
                     ASTPADILGMNNFGRIEKGYVADLVLLDKNFEVLTTWIDGEIY"
     gene            1920..>2627
                     /locus_tag="U0280_002732"
     CDS             1920..>2627
                     /locus_tag="U0280_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272652.1"
                     /translation="MPLFKHEGTYFNYEIQGEGIPFLFLHGLGDNLKFAYETFDKDEK
                     IQLISLDQRGHGKSGNDSRKLSYDRLAKDALALMDYLGIQHFFVGGLSMGAGVAVNLA
                     VQAADKVLGLIILRSSATDEPMKKEVIAWFSTVSKYLPKKDGALLLEQDPIFPSIKET
                     YPKAIDTFKRYFEDDAAVTHYKKFSDIPKDRPIKNKSELTNLTIPTLILANNYDVIHP
                     IEYSLFYKRNIENASYYE"
BASE COUNT          914 a          443 c          536 g          734 t
ORIGIN      
        1 ggaggaactg aagctgctag agaacaagaa aactatctct caggaagaac tcatgcagat
       61 tttttccatt tcaaaagata cagcaaggcg cgatatttta aaattagtcg aaagcggact
      121 cgcagaacgc tatccaggtg gcgtgtcact accagtttta aaacctcaaa tagaaagcta
      181 tacaagtaga ttagtaaaac aaagtgaaca gaaaaagaaa attgcttatg cagcaggtaa
      241 agtgataaaa gatcatatga caatctattt agatgtttcg accactgttc attttttggc
      301 ttcaaacctt gagcaacatg atttagtagt agtaacgaat tcgatggata atgccatagc
      361 tgcatctcag aaagaagcga acaaagtata tttgctcggt ggttttttca acttccattc
      421 gcgtgtatta tccggtgagc ccgttttagg tcaacttcag caatttaact tcgatgttgc
      481 ttttattggc ggggctggac taacggaaga tggcatcttt tattcagaac ttacagatgt
      541 ttacatgaaa caagagatta tcaggaattc cgaaaaagta tttttactaa ttgatagtac
      601 aaaagtaaat aaaaagacag cttccaaaat tgatttttct ggaattgatg ccgtaataac
      661 agatcagcct ttaccaaaag atttaatgca gtgccttatt tctaaagaag tagaagttat
      721 atctttgaaa ggattgtgaa aataatggcc gttatcaaaa atgtgaaaat ttacaaagaa
      781 aatgaattaa ttgatgcagc agttattaca gaaggaaatt tgataaaaga agtttgctca
      841 actactcctg aaaagtattc agatgagcca acttttgatg gaaatggaca gttgctaatt
      901 cccggaatga tcgacgttca tattcatggg gcaaataatt atgatatgat ggatggctca
      961 acagaaagca tccaagctgt ttcgatggct tgtgcggaaa ccggatgtac tagtttctta
     1021 gtcacctcgg ttagttcttc ttttgaagac ttgatccaaa tgattaagca aactaaaaaa
     1081 gtcattggaa aagagaaagg tgccaaaatt gcaggaattc atttagaagg cccctacctt
     1141 aatatagaaa aaaaaggaat gcaaaatcca gcctatttaa gacaccccga tttaaaagaa
     1201 atgaaaaaga tcttcgatga agcagatggt ctgataaaaa tggtcacaat tgctccagaa
     1261 ttgcctaggg gtatcgaact cattgacttc ttgaaaaaaa gaggagttgt ggtcgccatt
     1321 gcacattcca atgcaactta tgaagaggcg caaaatgctt tcgaacaagg agcaacccac
     1381 atcacacatt gcttcaatgc tatgccagcc attcatcacc gggcaccagg acttgttaca
     1441 gcagccttgg aaaatgattc ggtaagcgtt caaaccattg tagacggtgt ccatctccat
     1501 cccggaatcg tgcgccttat tcacaaaatt aaaggaccag ataaaatggt tctcacaacc
     1561 gatgcccttc aagcaatggg agttggcgac ggggagtata tttttggcgg tcaccaagta
     1621 acggttaagg aaggcatagc tcgtttaaaa gacgggacat tagcttcaag taccgtgacg
     1681 atgaataaat ccttaaagtt aagtaatgaa tttgggattc acttacaaga cgctattcaa
     1741 atggcagcaa gtacgccggc agacatttta ggaatgaaca attttggtcg aatcgaaaaa
     1801 ggctatgtcg ctgatttagt tttacttgat aaaaattttg aagttctaac tacatggatt
     1861 gatggtgaaa tatattaaat cgactggata aatactttca gaggagtgga ttataaaata
     1921 tgccattatt taaacacgag ggaacttact ttaactatga aatccaaggt gaaggcatac
     1981 catttttatt tcttcatgga ttaggtgata atttaaaatt tgcttatgaa acatttgata
     2041 aagacgagaa aatccaatta atttcattgg atcaaagagg ccatggaaaa agcggaaacg
     2101 attccagaaa acttagctac gacaggttgg ccaaggacgc attagcgtta atggattatt
     2161 taggaataca gcattttttt gtcggaggat tatctatggg ggctggcgtt gccgtgaatt
     2221 tggccgtcca agcagccgat aaagtgctgg gccttataat acttaggagt tctgcaacag
     2281 atgaaccgat gaaaaaagaa gtgatagcat ggtttagtac cgtaagtaag tatttgccta
     2341 aaaaagatgg tgccctatta ttggagcaag atccgatttt tccatcgata aaagagacct
     2401 atcctaaagc aattgatacg tttaagcgct attttgaaga tgacgccgct gttacccact
     2461 ataaaaagtt tagcgacata cctaaagata gaccaataaa aaacaaaagt gagttgacta
     2521 atttaacaat ccctactctt atactcgcaa ataactatga tgtaattcat ccaatcgaat
     2581 acagtttgtt ttataaacgt aatattgaaa atgcaagtta ttatgaa
//
LOCUS       DASDXX010000253         2613 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.254, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000253 DASDXX010000000
VERSION     DASDXX010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.254"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..652)
                     /locus_tag="U0280_002733"
     CDS             complement(<1..652)
                     /locus_tag="U0280_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272653.1"
                     /translation="MAYTKEEKSWIFQDWANSAYSIMITTAILPIYFKGVAASAGIAD
                     STSTAYWGYANSIGTLLISLLAPILGTIADYQFFKKRFFGIFTAIGIGFTFLLVFIPT
                     DAWLLLLGFYVLSLIGFSGANIFYDAFLIDVTTNDRMDRVSSAGYAYGYLGSCIPFII
                     FIIFQATGILPISDVALVNIGFVMTALWWLFFTIPMWKNVHQIHYIPAVKRPVRTSF"
     gene            complement(671..1939)
                     /locus_tag="U0280_002734"
     CDS             complement(671..1939)
                     /locus_tag="U0280_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEM2272654.1"
                     /translation="MEKHLFVISLDALGALDLKDTTDLPVLRELIKTGTHIQEVETIY
                     PSLTYPAHTSIITGHYPATHGIINNTKVQPEKDSPDWYWYKKAIQVPTLYDLAKEKGM
                     TTAAFLWPVAAKSGIDYNIAEIFPNRFWLTQMMVSLHASSPLFLIDMDRKFGHLRKGI
                     NQPDLDIFLTASVVDTIKAKRPRLLLTHLVDMDSMRHAHGVDSPEAKAALKRHDERLA
                     AIIQATKEAGIYENTVFAILGDHYQINVTHAIRLNVLFAEQGWMTVVDDKITEWDVYA
                     KSCDGSSYIYTKNNQHNQEIQHLLQNMAEIEEILPKEEIALRGAAPNATFMVEGRAGF
                     YFMDDLDGPVYEKVTDEMLGKPGYYKAVHGYSPKKPDYKTTIIFNGPGIKKGDKISNA
                     HLVDEAPTFAHILDLQFPNTAGSVIEAIFE"
     gene            complement(2003..>2613)
                     /locus_tag="U0280_002735"
     CDS             complement(2003..>2613)
                     /locus_tag="U0280_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2272655.1"
                     /translation="VLMNVFIALMLSLFFSLGKEHLVSFTNQFSTSKIGFIYEEVKFF
                     GSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVII
                     SLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLMSAKTNLPVFYTFIILIF
                     GEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTISHT"
BASE COUNT          845 a          521 c          463 g          784 t
ORIGIN      
        1 taaaactagt tctgactgga cgtttcaccg ctggaatata gtgaatttga tgaacgtttt
       61 tccacatggg aatcgtgaaa aatagccacc aaagcgccgt catcacaaaa ccaatattga
      121 cgagtgcaac atcactgatt ggcaagatac ctgtcgcttg gaaaataata aagataataa
      181 aaggaataca acttcctaaa taaccatacg catatccggc agatgacact ctatccatcc
      241 ggtcgttcgt tgttacatca attaaaaagg catcataaaa aatatttgcg ccagaaaagc
      301 caattaatga gagtacatag aaccccagta acaatagcca ggcatctgtg ggtatgaaaa
      361 ctaataagaa agtaaagcca atcccgatgg cagtaaaaat tccgaaaaat cgctttttaa
      421 aaaattgata atctgcaatg gttccgagta tcggagctaa taatgaaata agtaatgttc
      481 caatcgagtt cgcgtatccc cagtacgcgg tcgatgtact gtcagcaatc ccggcactcg
      541 ctgctacccc tttaaaataa attggtaaaa tcgcagttgt tatcatgatt gagtaggcgg
      601 aattcgccca atcttgaaaa atccaacttt tctcctcttt tgtatatgcc aagtgtgttt
      661 ctcccctttt ctattcaaat atcgcttcta tgacagagcc agcagtattt ggaaattgta
      721 agtccaaaat gtgtgcaaat gtaggcgctt cgtcaactaa atgagcattg ctgattttgt
      781 ctcctttttt aatgccaggt ccattaaaaa taatcgtggt tttgtaatct ggctttttag
      841 gagaataacc gtgaactgct ttatagtaac ctggttttcc aagcatttca tcagtgactt
      901 tctcgtaaac cggtccatct aaatcatcca taaaataaaa accagccctc ccttcaacca
      961 taaaagtagc attaggagca gcaccacgaa gtgctatttc ttctttcggc aaaatttctt
     1021 ctatttcagc catgttttga agtaaatgct ggatttcttg attatgttga ttgttttttg
     1081 tgtaaatata actggaaccg tcacaacttt tagcgtagac atcccattcc gtaatcttat
     1141 cgtccactac ggtcatccag ccctgttcgg caaaaaggac atttaggcgt atggcgtgtg
     1201 ttacattaat ttgataatga tcacctagaa tagcaaagac agtattttca taaattccag
     1261 cttcttttgt agcttggata atcgcagcta accgctcatc gtgtcgtttt aaggccgctt
     1321 ttgcttcagg ggaatctact ccgtgcgcat gtcgcatact atccatatca accaaatgtg
     1381 ttaaaagtaa tcttggcctt ttcgctttaa ttgtatcaac tacgctagct gtcaaaaata
     1441 tatctaagtc tggttggttg attccctttc gcagatgacc aaattttcgg tccatatcta
     1501 ttaaaaataa tggtgagcta gcatgtaatg acaccatcat ttgcgttaac caaaagcgat
     1561 ttggaaaaat ttcagcaata ttataatcaa ttccactttt tgctgcaacc ggccataaaa
     1621 aagcagcggt cgtcatccct ttctctttgg ctaaatcata aagtgttggt acttgaatgg
     1681 cttttttata ccaataccaa tcaggagaat ctttttcagg ttgaactttt gtgttattaa
     1741 taatcccatg agttgcggga taatgccccg tgataatact tgtgtgcgct ggatatgtca
     1801 gtgatggata aatggtttca acttcttgga tgtgagttcc tgtcttaatt aattcccgta
     1861 aaacgggcaa atctgtcgta tcttttaaat caagtgctcc aagtgcgtct aatgaaatca
     1921 caaaaagatg tttttccatt attttctccc ccttcaaaaa aacagggatt ttccagaaaa
     1981 tctggaagaa cccccgtgtg aattacgtat gactgattgt gtcctttggt tgttcgattt
     2041 cttcttgatt cgtaacgccg agcacatcta agaagaacat cacaactgga ataccaacga
     2101 ttaatcccca aataccgaag aaatgctctc cgaaaataag aataatgaaa gtataaaaaa
     2161 ctggtaaatt tgttttcgct gacataagtt ttggattaag gacataagat tcgagtgcat
     2221 ggataataat aacaacgact aaaatgtaga aaatgtattc cacgccgccg atagaataac
     2281 caatgatagt taacgggaca agagaaataa tcacccctgc cactggaatc aaaccaagca
     2341 aaaacaccat tatggataaa gtcatcaatt gcgggaaacc taaaatccaa agtgctatcg
     2401 tcgttaaaat ggcattcaca agcgcaatga taaattgtgc ttcaataact ttaccaaaag
     2461 tagcaacaaa tttggatcca aagaacttca cttcttcata gataaaacca attttactag
     2521 tagaaaattg attcgtgaat gaaactaaat gttcttttcc tagtgagaaa aatagactta
     2581 acattagtgc gataaagacg ttcatcaata cag
//
LOCUS       DASDXX010000254         2560 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.255, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000254 DASDXX010000000
VERSION     DASDXX010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.255"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..145)
                     /locus_tag="U0280_002736"
     CDS             complement(<1..145)
                     /locus_tag="U0280_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272656.1"
                     /translation="MIFQRLLKTRDTEFYRVIQNGNIEDVFGYLLIHDKREPAEIDDF
                     KVFA"
     gene            651..2006
                     /gene="dnaA"
                     /locus_tag="U0280_002737"
     CDS             651..2006
                     /gene="dnaA"
                     /locus_tag="U0280_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEM2272657.1"
                     /translation="MQSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIIS
                     APNNFVRDWLEKSYTQFIANILQEITGRLFDVRFIDGEQEENFEYTVIKPNPALDEDG
                     IEIGKHMLNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLM
                     HAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFL
                     AGKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPD
                     LETRIAILRKKAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA
                     GLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYL
                     SRELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRKAQNM
                     F"
     gene            2200..>2560
                     /locus_tag="U0280_002738"
     CDS             2200..>2560
                     /locus_tag="U0280_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM2272658.1"
                     /translation="MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTL
                     TGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNY
                     QTNISSGQASFTLNGLDP"
BASE COUNT          863 a          459 c          444 g          794 t
ORIGIN      
        1 ttgcaaacac tttaaaatca tcaatttctg ctggttcccg tttgtcgtga attagtaagt
       61 atccaaacac atcttcaata ttcccgtttt gtataactcg ataaaattct gtatctctcg
      121 ttttcaaaag ccgttgaaat atcatttttc acaacctcat ttatttgtct tttttcttat
      181 tctggtaaat agtttaacac attgtcgtaa tgaaatcctt ttccggaaag tgtggataac
      241 tagttaataa caccttttta ttgtggataa ccttttcaat tagtttaaac ttatacacaa
      301 ttagtggtta attacacaca atggcttgtg gataattaaa tctaacaatt tcgttacaga
      361 tttctttaca cacaagttat acacaagtta actggctgtg gacaaccgtt tttcacatct
      421 ggacagtttt gtggatagat tttgtaagtc cttgctatca gagtgatttt ctgatattat
      481 aattcctgtc gaatagaaat atagctgggg aaaactaaag ttatccacaa tacattttta
      541 ctttgtggat aattttttaa cagtgtttgg ataaccttat ccatggcttt ttctatctgt
      601 ggataacttt atagcatcca tttacattac ataaaaaagg ggggttacta gtgcaatcaa
      661 ttgaagacat ctggcaggaa acactgcaaa tcgttaaaaa aaatatgagt aaacctagtt
      721 acgacacatg gatgaaatca acaaccgctc attcacttga aggtaacacg tttattattt
      781 cagcgcccaa taattttgtt cgcgattggt tagagaagag ttacacgcaa tttatcgcta
      841 acattttgca agaaataact ggtcgcttat ttgatgtccg ctttattgat ggcgagcagg
      901 aagaaaactt tgaatacact gtgattaaac caaatccagc gttagatgaa gatggcattg
      961 aaattggaaa acatatgctt aatccgcgtt atgtttttga tacttttgtc attggttcag
     1021 ggaacagatt tgcccacgca gcatcacttg cagtagccga agcaccagcg aaagcatata
     1081 atccactctt catttatgga ggagttggcc tcggtaaaac acatttaatg cacgcagttg
     1141 gccactatgt tcaacaacat aaagataatg cgaaagtaat gtacctttcc agcgaaaaat
     1201 tcaccaatga gtttattagc tctattcgtg ataataaaac cgaagaattc cgtacaaaat
     1261 accggaatgt ggatgtctta cttattgatg atattcaatt tttagcaggt aaagaaggaa
     1321 cacaagagga atttttccat acatttaaca cactttatga tgaacaaaag caaattatta
     1381 tttccagtga ccgaccaccg aaagaaattc caacattgga agatcgactg agatcccgct
     1441 ttgaatgggg cctaattact gatattacgc caccagactt agaaacacgg atcgccattt
     1501 tacgtaaaaa agcaaaagca gacggattag atattccaaa tgaagtcatg ctttacatcg
     1561 caaaccaaat tgattcgaat attcgcgagc tagaaggcgc actcatccga gtagttgctt
     1621 attcttccct cgttaataaa gatataacag ctggtcttgc agcagaagca ctaaaagata
     1681 ttatcccctc ttctaaatca caagttatta caattagtgg tattcaagaa gcagtcggtg
     1741 aatatttcca tgttcgttta gaagatttta aagcaaaaaa acggacgaaa agtatcgcat
     1801 tcccgcgcca aatcgctatg tatctttcaa gagagcttac agatgcctca ttaccaaaaa
     1861 tcggtgatga atttggtggt cgagatcata caaccgtcat ccatgcacat gaaaaaatat
     1921 cgcaactact aaaaaccgat caagtgttga aaaatgacct tgccgaaatt gaaaaaaatt
     1981 taagaaaagc acaaaatatg ttttaataga cctgtgtaca atgtggataa ctgaaacata
     2041 cttacccaca agttatcaac atgtggaaaa ctttatgtcg catggcttat aacctactta
     2101 tccacaaatc cacagcgcct attactatta ctacgatttt ttattaatta attaaaggtt
     2161 tttgaggttt tacaaaatat aaaaaaatgg gggatactca tgaaatttgt tattgagcgt
     2221 gatcgtcttg tccaagcagt caatgaagtt actcgtgcca tctctgcaag aacaacgatt
     2281 ccaattttaa cggggataaa aatagtcgta aatgatgaag gtgtaacact aactggtagt
     2341 gattccgata tttcaatcga agcatttatt ccattaattg aaaatgatga agtaattgta
     2401 gaagtggaga gttttggtgg aattgtactt caatcaaaat actttggcga tattgttcgt
     2461 cgtttaccag aagaaaatgt agaaattgaa gtgacttcta actaccaaac caacattagt
     2521 tctggccaag catcctttac attaaatggc ttagatccaa
//
LOCUS       DASDXX010000255         2538 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.256, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000255 DASDXX010000000
VERSION     DASDXX010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.256"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..280)
                     /locus_tag="U0280_002739"
     CDS             complement(<1..280)
                     /locus_tag="U0280_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2272659.1"
                     /translation="MILQENIEIFGKKIRVNNDNFSPIAELWGDVMVDKPAGDIFAVY
                     SNYASDYKGDYDLLVGTKDWDEEKSVLIKAGDYLVFSVDNASHKGVEET"
     gene            complement(336..1232)
                     /locus_tag="U0280_002740"
     CDS             complement(336..1232)
                     /locus_tag="U0280_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEM2272660.1"
                     /translation="MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYA
                     GFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSHEILREKI
                     TLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKVAYIQKAFTTNKQLKITYIAMSGAET
                     TREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIGKSIMYVEETEHQPAE
                     MKKIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIISFLLMFGSAVKIL
                     EPASLQKDYKSEVEKLYFNLNC"
     gene            complement(1276..1845)
                     /locus_tag="U0280_002741"
     CDS             complement(1276..1845)
                     /locus_tag="U0280_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM2272661.1"
                     /translation="MRSLRKIVIILIIIGFMYLLIVAAFMFGGSRTKPSENADTVLIL
                     GAKVNGTPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVN
                     EGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASG
                     LPATSKTFAKYKGMMREVLSITYAWVFDH"
     gene            complement(2021..2440)
                     /locus_tag="U0280_002742"
     CDS             complement(2021..2440)
                     /locus_tag="U0280_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272662.1"
                     /translation="MYRLLSIAFFLIAVICLLFPWMASGIDAATFELVYEPAYKLIWM
                     QPIIIVGYLGFLCTIFIPKFQRGKNRIVPSIGILILVIGLLNLAVRPLFGFDSFTFSI
                     IATYVSELVEPAFLIAVSASILSLIMYAIYLKKPENL"
BASE COUNT          802 a          569 c          338 g          829 t
ORIGIN      
        1 aagtttcttc cacgccttta tgactcgcat tatctacaga aaaaactaaa taatctccag
       61 ctttaattaa gacactcttc tcttcatccc agtcttttgt tcctaccaac aaatcatagt
      121 cacctttgta atcacttgca taattactat ataccgcaaa aatatctcct gcaggcttat
      181 ctaccattac atcaccccaa agctctgcaa tcggactaaa attatcattg tttacacgta
      241 tctttttccc aaaaatctct atattttctt gtaaaatcat tatttgccgc ctccttttaa
      301 aaccattata gcgaacaaaa cctgacaact atctgtcaac aattcaaatt aaaataaagt
      361 ttttccactt cggatttgta gtctttttga agcgatgcag gttctaaaat tttcacggca
      421 cttccaaaca tcaataaaaa cgatattata ttgcgctcca aatcatagaa aaagcttaca
      481 cggacataat cgtctccagt ctccatttct tcttgcaaaa aataatccaa caatttcccg
      541 agctgatttt tcggaaattc caacacaatt ttcttcattt ctgcaggctg gtgctccgtt
      601 tcttcgacgt acataatcga tttacctatt tctttcaaag aagttattcg cgttaattta
      661 aaatgacgaa tcgctgctct tttgtggcaa taggcttcta aataccaact tccatccatc
      721 aagtttaatt tttgcggcga aatctcccgc gttgtttccg cgccactcat agcgatatac
      781 gtaattttaa gttgtttatt tgtcgtaaaa gctttctgga tataggcgac ttttcgtttc
      841 acttctgctt caatttgctg gcgatgttgt gtcgctgaat caaagaaaat atgcttacta
      901 gttggttttt cagtctgtaa tagcgtgatt ttttctcgca aaatctcgtg gctatcattc
      961 agcataaact ccgaacgcgc ctctaatgcc tccagcaaaa tctgtttttc cgcctccgaa
     1021 aaagtaaatg tcgccagctt atatgtatcg agcattgtga acccgccgtt ttttcccggc
     1081 aaagcaacaa ctggaaatcc cgcataaagt agcgtatcca tatcgcgata aatcgtcctt
     1141 gtgcttactt caaatttttc agccagctca cttgccagca cttttcgctc caaaatcatg
     1201 actagtattg ctaaaatccg ttctagtttc accccaaaac ctccaacacc ttttagttta
     1261 ttataccatg cactattagt gatcaaaaac ccatgcatat gtgatggata aaacttctcg
     1321 catcattcct ttatactttg caaacgtctt tgatgttgca ggaaggcctg atgcatcaat
     1381 cccttgacgc tttgctaaca ttagcgctct atacatatga taatcacttg tcacaatcac
     1441 tgtttttcct aaattaaatt tcgcattact atatttaata ttctcttctg ttctcttaga
     1501 tttcgtttcc gtttcaatcc gctttcttgc aattccttca ttaaccaaat attcttccat
     1561 aacggaagct tcagtcgcac tttcatcagc cccttggcca ccactaacaa tcactttcgc
     1621 ctttggatat tcgtttaaat aagcgactgc cgcatccaat ctttcttgca aaactaatga
     1681 aggaactgct ggggtcccat tcacttttgc acctaaaatc aacactgtat cagcattttc
     1741 acttggtttc gtcctagaac caccaaacat aaaggccgcg acgattaata aatacataaa
     1801 accaattatg attaaaataa tgacaatttt cctcagactt ctcatctagt tcgtcctccc
     1861 tacttcttaa ttaatagctt agcagaagat tttaaataaa agagaaagaa ataatcaagt
     1921 taagggaaat ttaaaaaaca ccccgaaaca gttttgaggt gtttttgcat tattagttct
     1981 actaaaaata ctcacatgtg attgattcta ttcagtatta tcataaattc tccggctttt
     2041 ttaaatatat cgcatacata attaaagata aaatacttgc tgacaccgcg atgagaaatg
     2101 ctggttctac taattcagag acataagtag ctataatact aaaggtgaat gaatcaaatc
     2161 caaataatgg ccgaactgcc aaattaagta aacctataac caatattaaa attcctatag
     2221 atggtacaat tctattttta cctcgctgaa attttggaat aaatatagta cacaaaaatc
     2281 ccaaatatcc cacaatgatg attggttgca tccaaattaa tttataagca ggctcatata
     2341 ctaattcaaa tgttgctgca tctatcccgc tagccatcca cgggaacaac aaacaaatta
     2401 ctgctattaa aaaaaatgca atgcttaata atctatacat aagcaaacct cctcccttgg
     2461 tacatattag cataaaaagt taatgtataa aaaaactgct caagaatggc ttttcttcgt
     2521 tttaaataag caaaaaaa
//
LOCUS       DASDXX010000256         2521 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.257, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000256 DASDXX010000000
VERSION     DASDXX010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.257"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            11..901
                     /gene="murQ"
                     /locus_tag="U0280_002743"
     CDS             11..901
                     /gene="murQ"
                     /locus_tag="U0280_002743"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HEM2272663.1"
                     /translation="MLENLATEERNEKTIDLDTLSPKEILAVMNEEDLTVPIAIKKVL
                     PQIELIVSGVISCFQKGGRLIYLGAGTSGRLGVLDAAECVPTFGVSKEQVIGLIAGGE
                     KAFVAAIEGAEDSKILGENDLKQIKLTANDFVIGIAASGRTPYVIGALDYAKSVGAKT
                     GAISCNANAKISAHADIAVEVVTGAEILTGSTRLKAGTAQKLVLNMISTASMVGIGKV
                     YKNLMVDVLPTNKKLEERSKRIIMEATEADYETANKFYEAAEKHVKVAIVMILTNSTK
                     EIALEKLSEAKGFVRNTIQK"
     gene            914..2362
                     /locus_tag="U0280_002744"
     CDS             914..2362
                     /locus_tag="U0280_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM2272664.1"
                     /translation="MTKEAEIGKQIFIHVGGMENVSRIAHCMTRVRLGIVDSDLVNVA
                     GLKKVPGVIGVVEDDTLQIIVGPGVVNKVAGAMAEMAGVKIGETIQENLDSGTKTGKE
                     LVEEKASKTKAELKAKQNNSSGFKRLLKSISNIFVPLIPGFVGAGLIAGIAAIISNNI
                     TAGNLDAAVWTQYIDILGVINKGIFAFLAIYVGINTANEFGGTPVLGGGIAGITLLSG
                     LAEGHTITNIFTGDPIVAGQGGIIGVLLAVWLMCVLEKNLRKIIPNAIDIIFTPTLVL
                     LIIGLVTIFLIMPFAGLVSDGLVNGINWVIEVGGVFAGFVLGTLFLPMVMFGLHQVLT
                     PIHVEMIAQNGYTILLPILAMAGGGQVGAAIALWIRCRKNKPLVNMIKGGLPVGILGI
                     GEPLIYGVTIPLGKPFLTACLGGGIGGAVIGYFGNVGAIAIGPSGVALIPLIANNEWL
                     SYVIGLIAAYLGGFILTYFFGTPKDAMNSVEL"
BASE COUNT          825 a          375 c          565 g          756 t
ORIGIN      
        1 agtggttaaa atgttagaga atttagcaac agaagaacga aatgaaaaaa cgattgactt
       61 agacacactt tctccaaaag aaattttagc agtaatgaat gaagaagatt taacagttcc
      121 aatagctata aaaaaggtct tacctcaaat cgagttaatt gtaagcggtg tcatctcgtg
      181 ctttcaaaaa ggtggccgtt tgatttatct tggtgccgga acaagtggaa gattaggagt
      241 acttgatgca gctgaatgtg ttccaacttt cggggtctca aaggagcagg tcattggctt
      301 aatcgcaggt ggtgaaaaag cttttgtagc tgcaatagaa ggtgcggaag attcaaaaat
      361 acttggcgaa aacgacttaa agcaaattaa gttaactgca aacgattttg ttattggtat
      421 tgctgcaagt ggtagaacgc cttatgtaat tggcgcactt gattacgcca aatctgtcgg
      481 ggctaaaacc ggagcaattt cttgtaatgc taatgcaaaa atttcagcgc acgccgatat
      541 agccgtagaa gttgtgaccg gagcggaaat tttaacaggt tctactaggt taaaagcagg
      601 aacagctcag aaactagtat taaatatgat ttcaacagct tcaatggttg gaattggaaa
      661 agtgtataaa aatttgatgg tggacgtttt accaacaaat aaaaaattag aagagcgctc
      721 taaacgaatt attatggaag ctacagaggc tgattacgaa acagcaaata aattttatga
      781 agcagctgaa aaacatgtca aagttgccat tgtcatgatc ttaaccaatt caaccaaaga
      841 aatagcgtta gaaaaattaa gtgaagcaaa agggtttgtt cgaaacacca ttcaaaaata
      901 aggagctgga ataatgacaa aagaagcaga aattggaaaa caaatattta ttcatgtcgg
      961 tggaatggaa aacgtttcaa gaattgcaca ttgtatgaca cgagttcgat tggggatagt
     1021 tgatagtgac cttgttaatg tagctggatt aaaaaaagtt ccgggtgtta tcggtgttgt
     1081 agaagatgat actttacaga ttattgttgg accaggagtt gtgaacaaag tggccggcgc
     1141 aatggcagaa atggctggtg ttaaaattgg cgaaacgatt caagaaaatt tggatagcgg
     1201 cacaaaaact ggtaaggaat tagtcgaaga aaaagcatcc aaaacaaaag ctgaattaaa
     1261 agcaaaacaa aataattcat ctggttttaa aagattacta aaatcaatct ctaatatttt
     1321 tgttccacta attccgggtt ttgttggagc gggattaatt gctggtattg cagcaattat
     1381 ttctaataat ataacagctg gaaatttaga tgctgctgtt tggactcaat atattgatat
     1441 tttaggagtt attaataaag gaatatttgc cttcttagct atttatgtag ggattaatac
     1501 cgcgaatgaa tttggtggaa cacctgtact cggtggtgga atcgctggga taacattgct
     1561 ttccggatta gcagaaggac atacaattac aaacattttc acgggggatc ctatcgtagc
     1621 cggacagggt ggcattatcg gcgtattatt agcagtttgg ttaatgtgcg tacttgaaaa
     1681 aaacttgcgc aaaatcattc cgaatgcgat agatattatt tttacgccaa cgcttgtatt
     1741 acttattatt ggtttagtaa ctattttctt aattatgcct tttgcaggac ttgtatcaga
     1801 tggtttagtt aacggtatta attgggtaat cgaagttgga ggagtattcg caggttttgt
     1861 gctagggacg ttattcttac caatggttat gtttgggtta catcaagttt taacacccat
     1921 ccatgtagaa atgattgctc aaaatggtta tactatctta cttcctattc tagctatggc
     1981 aggtggcgga caagttggtg cagcaatcgc gctttggatt cgttgtcgta aaaataaacc
     2041 acttgtaaat atgattaaag ggggtctacc ggttggaatt ttaggtatcg gtgaaccatt
     2101 aatttatggg gtaacaatac cacttgggaa accttttctt acagcttgtc tcggaggcgg
     2161 tatcggtggg gcagtaatcg gctactttgg taacgtcgga gcaattgcaa tcggcccatc
     2221 aggagttgca cttatcccac taatcgcgaa taatgaatgg ctttcttacg tcatcggatt
     2281 aattgcagca tatttaggtg gattcatttt aacttatttc tttggtacac caaaagacgc
     2341 aatgaatagc gtagaattgt aagaagtaat tgctgttcca cggaaatttg tacacattga
     2401 agtgaattga ttagagaagc ttcgaaatta gttttattac taatttcgaa gcttttttac
     2461 gcagttagca taacaaataa tgaatccgtt ttgatagtat taaagtaaaa cggggtgtca
     2521 a
//
LOCUS       DASDXX010000257         2519 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.258, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000257 DASDXX010000000
VERSION     DASDXX010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.258"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(102..506)
                     /locus_tag="U0280_002745"
     CDS             complement(102..506)
                     /locus_tag="U0280_002745"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM2272665.1"
                     /translation="MGSLNVSIVTPDGPVYEGVAQMVIARTKAGELGILPGHVPLVAP
                     LKIDIVRLKVESGEEWVAVNGGFMEVNGEEVNILADTAEREQDIDIDRAEKAKQRAEE
                     ELSRAKEQKVDEVMAQLALQRAINRIHAKEHN"
     gene            complement(528..1949)
                     /gene="atpD"
                     /locus_tag="U0280_002746"
     CDS             complement(528..1949)
                     /gene="atpD"
                     /locus_tag="U0280_002746"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM2272666.1"
                     /translation="MSKGQVIQVMGPVVDVKFEGGNLPEIYNALVIEYKSDAEEAPTS
                     QLTLEVAIQLGDDVVRTIAMASTDGVQRGMEVIDTGSPITVPVGTVTLGRVFNVLGNT
                     IDLDEPLPSDIKRNKIHREAPTFDQLATTTEILETGIKVVDLLAPYLKGGKIGLFGGA
                     GVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYFEMKDSGVIEKTAMVFGQM
                     NEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVG
                     YQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERK
                     LTEQGIYPAVDPLASTSRALSPDIVGEEHYAVATEVQRLLQRYKELQDIIAILGMDEL
                     SDEDKQSVSRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKDLLAGKYDHIPE
                     DAFRSVGRIEDVLEKAKDMGVEV"
     gene            complement(2010..>2519)
                     /gene="atpG"
                     /locus_tag="U0280_002747"
     CDS             complement(2010..>2519)
                     /gene="atpG"
                     /locus_tag="U0280_002747"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HEM2272667.1"
                     /translation="ARDFFKARQMNVVLEVQGITDHPIFAEIKDIASNTVQMFEDGVY
                     DEVFIYYNHHINSISSELRKEQLLPLTEFHEKGKETDVDLTTYEFEPSEQEILEVLLP
                     QYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITE
                     IVGGAAALE"
BASE COUNT          688 a          547 c          475 g          809 t
ORIGIN      
        1 gctactactc attttaacaa atacctctag aaaaaaacag ttaatacact tatgcatata
       61 aaaaaacttc ccggcactgt ggccaggaag taatatgatt attaattgtg ttcttttgca
      121 tgaattctgt tgatggctct ttgtagtgcc agctgagcca ttacttcgtc cactttttgt
      181 tcttttgctc ggctaagttc ttcttctgca cgttgttttg ctttttcagc gcgatcaata
      241 tcaatatctt gttcacgttc agcagtatcc gcgagaatat taacttcttc accgtttact
      301 tccataaagc caccattgac agcgacccat tcctcaccag actcaacttt taaacgaacg
      361 atgtcgattt taagtggagc aactagtgga acatggccag gtaaaatacc gagttcacct
      421 gcttttgttc tagcaataac catttgagca acgccttcat aaacagggcc gtctggagta
      481 acaatactaa catttaatga acccatacgt atttcctcct gtttttatca gacttcaacg
      541 cccatgtctt ttgctttttc aagaacatcc tcaatgcgtc caactgaacg gaatgcatct
      601 tcaggaatat ggtcgtattt tccggctaat aggtctttga atcctttaac tgtttcttta
      661 acaggaacat aagaaccttt ttgacctgta aattgttctg caacgtggaa attttgtgat
      721 aagaagaatt gtacacgacg cgcacgggaa acggattgtt tatcttcgtc agataactca
      781 tccataccta agattgcgat gatatcttgt aattctttat atctttgtaa taaacgctgt
      841 acttccgttg ctactgcata gtgttcttct ccaacgatat caggagaaag cgcacgagat
      901 gtagaagcaa gtggatctac cgctggataa ataccttgtt ccgttaattt acgttccaag
      961 ttagttgttg catctagatg ggcgaaagtt gtagccggag ccgggtcagt atagtcatcg
     1021 gctggtacat aaatcgcttg gatagaagta acagatccaa cgttagtaga tgtaatacgt
     1081 tcttgtaatt gacccatttc agtagctagg gttggttggt aacctaccgc agatggcata
     1141 cgacctagta aagccgaaac ctctgaacca gcttgtgtga aacggaaaat attatcaatg
     1201 aataaaagta catcttgatg ttcttcatca cggaaatatt cagcaattgt taaaccagtt
     1261 aaggcaacac gcatacgcgc acctggtggc tcgttcattt gaccgaatac catcgctgtt
     1321 ttttcaataa caccagaatc tttcatttca aagtaaaggt cgttcccttc acgagtacgt
     1381 tctccaacgc ccgcgaacac tgaaatacca ccgtgttctt gtgcgatatt atggataagc
     1441 tcttgaatta gaacggtttt acctacaccc gcaccaccga acagtccgat tttaccacct
     1501 tttaggtatg gcgctaacaa gtcaactact ttaattcctg tttcaagaat ttctgttgtt
     1561 gttgctaatt gatcgaaagt tggagcttcg cggtgaattt tgttacgttt aatatcgctt
     1621 ggaagtggtt cgtccaaatc gatggtgttt cctaatacat taaatacacg accaagagtt
     1681 actgtaccta caggaactgt aattgggctc ccagtatcaa taacttccat acctctttga
     1741 acaccatctg ttgatgccat tgcgattgta cgaacaacgt catcacctaa ttggatggct
     1801 acttctaaag taagttggct agttggtgct tcttctgcat cagatttata ttcaataact
     1861 agggcattgt agatttcagg taagtttcca ccttcaaatt taacgtctac aactggaccc
     1921 ataacttgga ttacttgtcc tttagacatg caattattcc tcctcactta ccttcccatt
     1981 tatcgggacg ttacaagaaa cgccgacttc tattctagtg cggctgctcc tccgacgatt
     2041 tcggtaattt cttgcgtgat cgcagcttgg cgagcacggt tatattgtag tgataagtca
     2101 ctgattaaat cggatgcatt gtctgtcgcg cttctcatgg cagtcatacg agcagcatgt
     2161 tcagcggctt tggcatccag aagtgctccg aaaattaggc tttccacata ttgcggcaat
     2221 aatacttcca gaatttcttg ttcggaaggc tcgaattcgt atgtagttaa atctacatct
     2281 gtttccttac ctttttcgtg aaattctgtc agtggtagta gttgctcttt tctcagttcg
     2341 ctagaaatag aattaatatg gtgattataa taaatgaaaa cctcgtcata aacaccatct
     2401 tcaaacattt gaactgtgtt actagcaata tctttaattt ccgcaaatat cgggtgatct
     2461 gtaatgcctt gtacttctaa aaccacgttc atttggcgcg ctttgaagaa gtctcgagc
//
LOCUS       DASDXX010000258         2511 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.259, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000258 DASDXX010000000
VERSION     DASDXX010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.259"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            108..1247
                     /gene="queG"
                     /locus_tag="U0280_002748"
     CDS             108..1247
                     /gene="queG"
                     /locus_tag="U0280_002748"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEM2272668.1"
                     /translation="MIVKSTSDYAALKEELIAYAHEIGIQKIGFTTADPFLFLKERLL
                     EAEALDLFTGFEHPVIDERVYPELIFKEPQSIIAIALAYPSKLKEAPISKKGARRGVF
                     ARASWGIDYHTVLREKLALLETFLSERLPDVRMKSMVDTGELSDVAVAERAGIGWRGK
                     NTLLITPEYGSWVYLGEMITNIPFEPDTPASDLCGSCNQCVKACPTGSLLGEGKMNPK
                     ICLSYLTQTKDFLDEKYREVLHNRLYGCDTCQVVCPYNRGHDFHFHDEMEPDPELVRP
                     ELKPLLHISNRAFKEQFGDMAGSWRGKKPIQRNAIIILARYKDKTAVPDLIDCLQNDP
                     RPVIRGTAGWALRKIGGSDAEKAVEQALQTEQDEQVLQELTAITN"
     gene            1268..1777
                     /gene="trmL"
                     /locus_tag="U0280_002749"
     CDS             1268..1777
                     /gene="trmL"
                     /locus_tag="U0280_002749"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HEM2272669.1"
                     /translation="MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKM
                     LKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFV
                     FGKETTGLPDALLQKNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEP
                     NYDRKIFQD"
     gene            1790..>2511
                     /gene="nfsA"
                     /locus_tag="U0280_002750"
     CDS             1790..>2511
                     /gene="nfsA"
                     /locus_tag="U0280_002750"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HEM2272670.1"
                     /translation="MNQAIDAILGHYSVRKFEDKDLTEEALTLLIKSAQAASTSSFVQ
                     AYSIIGITDKGVREQISAIAGNQPYTVQTGQLFIFVADLARHHAILEEHQVDTTALET
                     SEKWLVSVIDAALAAQNMAVAAESLGLGICFIGGIRNDVEQISEILDLPPYTMPLFGL
                     TIGYPVANKEKAKPRLPQDLVYHENTYQKMNPTILTEYDEQIKNYYDERTAGKRVEGW
                     SEQIARGLGRPSRLDLKAFMEK"
BASE COUNT          825 a          474 c          540 g          672 t
ORIGIN      
        1 cccgctttat atttttttat aaatcctgtt atcaacgcag tgtttcgacc tttttaagcg
       61 aagcattgcg tttattttat tgcctgaaaa taaggagaga ggggatgatg atagtgaagt
      121 cgacatcaga ttacgccgca ttgaaagaag aactcattgc ttatgcgcat gaaataggta
      181 ttcaaaaaat tggtttcaca acagcagacc cttttttatt tttaaaagaa cgattactag
      241 aagcggaagc gctggacctt tttacaggat ttgaacatcc ggtaattgat gaacgggttt
      301 atccagagct tattttcaag gaaccgcagt cgattatcgc cattgcactt gcttatccgt
      361 ctaaattaaa agaagcacct ataagtaaaa aaggagctag acgaggtgta tttgccagag
      421 cttcttgggg aattgattat cataccgttt tacgagaaaa attagcgcta ctcgaaactt
      481 ttttaagtga acgtttgcca gatgtacgaa tgaaatcaat ggtggatact ggggaattat
      541 cagatgtagc tgtagcagaa cgagcgggca ttggctggcg cgggaaaaac acgctgctca
      601 taacgccaga atacggctcg tgggtctatt taggcgaaat gataaccaat ataccattcg
      661 aaccagatac gccggctagc gacttgtgtg gtagttgcaa tcaatgtgtg aaagcctgcc
      721 cgacaggttc cttactgggt gaagggaaga tgaatccgaa aatatgttta agttatttga
      781 cacaaacaaa agactttcta gatgaaaaat atcgcgaagt gttgcataat cgtttgtatg
      841 gttgtgatac ttgtcaggta gtttgtccgt ataatcgtgg gcatgatttc cactttcatg
      901 atgagatgga gccggatcca gagcttgttc gaccagaatt aaaaccacta ttacacattt
      961 ccaatcgcgc ttttaaagaa caatttggcg atatggcggg ttcgtggcgt gggaagaagc
     1021 ccattcagcg aaatgccatc attattctag cgcggtataa agataaaaca gctgtaccag
     1081 acttaattga ctgtttacaa aacgatccaa gaccagtcat tcgaggaacg gctggctggg
     1141 cgctaagaaa aatcggtgga agcgatgccg aaaaagctgt cgagcaagca cttcaaaccg
     1201 aacaagatga acaagtatta caagaattaa cagccataac aaattaatag aaaccaggtg
     1261 aaaagcaatg ccaaaccata tcgtactata tcaaccagaa atcccagcga ataccggaaa
     1321 tatctccaga acatgtgccg ggacggatac ttacttacat ttaatccgtc cacttggttt
     1381 ttcgacagat gataaaatgt taaaacgtgc tggacttgat tactgggata acgtaaaact
     1441 ttcctattac gattctctag atgaattctt cgagaaaaat gaaggcggag aattttacta
     1501 cattaccaaa tttggtcgtc atgtttatag tgatatcgat tatagtgacc caaacaaaga
     1561 ttatttcttc gtttttggaa aagaaacgac cggattgcca gatgcgcttt tacaaaagaa
     1621 tgaagaaaat tgtttgcgta ttccaatgac agatcatatt cgttcgttga atttatcgaa
     1681 cacagcggca attttagctt atgaagcgtt acgtcagcag aattttggcg cacttttaca
     1741 agaaccgaat tacgatcgaa aaatttttca agactaaggg ggagttagga tgaatcaggc
     1801 gatagatgct attctaggac attactcagt gcgaaaattt gaagataagg acttaacgga
     1861 agaagcgttg accttactta tcaagagtgc acaagccgca tctacatcca gttttgttca
     1921 agcatactcc atcatcggaa taacagataa aggcgttcgt gaacaaatct cagccattgc
     1981 aggaaatcaa ccatatacag tacaaaccgg tcaactattt attttcgttg ctgatttagc
     2041 tcgtcatcac gccatcttag aagaacatca agtggataca actgcactgg aaacgtcaga
     2101 aaaatggctt gtttctgtga ttgatgccgc acttgctgca caaaatatgg ccgttgccgc
     2161 agaatcatta ggacttggca tttgctttat tggcgggatt cgtaacgatg tcgaacaaat
     2221 ctcggaaata cttgatttac caccatatac gatgccatta ttcggcttga caattggtta
     2281 tccggttgct aacaaagaaa aagcgaaacc gagattgcct caagatttgg tataccacga
     2341 aaacacctac caaaaaatga acccaactat tctaactgaa tatgatgaac aaataaaaaa
     2401 ttactacgac gaaagaacag caggaaaacg agtagaaggt tggtccgaac aaattgcgcg
     2461 tgggcttgga agaccaagcc ggctagactt aaaagcattt atggaaaaac a
//
LOCUS       DASDXX010000259         2502 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.260, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000259 DASDXX010000000
VERSION     DASDXX010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.260"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..236
                     /locus_tag="U0280_002751"
     CDS             <1..236
                     /locus_tag="U0280_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272671.1"
                     /translation="RNITATIIVGIILTLFLIAGTIIMFVIAIRQASSLRTDAWAKIL
                     TTIDPQFPVEFLNEKKWQKAFLAQMESMNEQLA"
     gene            complement(369..1559)
                     /locus_tag="U0280_002752"
     CDS             complement(369..1559)
                     /locus_tag="U0280_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEM2272672.1"
                     /translation="MEKNIETKKINLALLVCLVGFPQISETIYTPSLTEIATSYGVSL
                     NLAQMTLSIYFLAFAVGVFFWGVSSDFLGRRKAMNFGIFIYILGCFVCLFSNNITMLF
                     IGRFVQAFGASTGSVTTQTILRDNYHGNDRHHLFAKISAALAFSPAIGPLIGGFIGQY
                     YGFRVVFLFLVVMGMILLFWSLKRLPETKTANATPFSVQKMVVIGKKMIFDRYTIAFG
                     VLIGIFNGILFSYYSEAPTIFIERFHFNQSQYGFMGCAVATATILGAWLSNWRLKQNS
                     PHKIIKEGILLALIGTLFLSMVALFPLTIQVIFYIFFISIILVGIGMSLPNCLSLALV
                     KFQEVAGTAGAFLSLGYYVIVSLCTFFIGVLHSGSILVFPAFCLVLLLIALLCIKIAA
                     RNNP"
     gene            2160..>2502
                     /locus_tag="U0280_002753"
     CDS             2160..>2502
                     /locus_tag="U0280_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactococcin 972 family bacteriocin"
                     /protein_id="HEM2272673.1"
                     /translation="MKRKVCVLAIALPTVLSPMGALAAQNLNEGETSLDSLMSANKTG
                     EKVIFSETTTGKKPLLKAAQSAGGGTFWVTWGQDRHYSNYQHYKKMHRSSASNFRTTV
                     RSRWEPKSNLAS"
BASE COUNT          885 a          415 c          480 g          722 t
ORIGIN      
        1 accgaaatat cacagctaca atcattgtag gtattatttt aactttattt ttaattgccg
       61 gaacaataat aatgtttgta atagcgattc gccaagcatc ttcattacgt acagacgcat
      121 gggctaaaat cttaaccaca attgaccctc agtttcccgt tgaattccta aatgagaaga
      181 aatggcaaaa agccttcctt gctcaaatgg aaagtatgaa cgaacaatta gcataatcag
      241 agaagtatta gacttttaga ggtttaatac tttttttatt ccccgggaaa taaatagtat
      301 tttatattgt gataacattt aaaataaaac tggcaccgtt tcaagataga aacggtgcca
      361 gttttttgct aagggttatt tctagcagct atttttatac agagcaaggc aattagaagt
      421 aatactaggc agaatgcggg aaatacaagt attgatcctg aatgcaaaac gccaatgaag
      481 aaagtacaaa gactgacaat tacataatat cctaagctta aaaaggcgcc agctgtaccg
      541 gcaacttctt gaaatttcac tagtgctaga cttaaacaat ttggtaaaga catgccaatt
      601 cctactaaga taatagaaat gaagaagatg tagaatataa cttggatagt aagcgggaat
      661 agggcaacca tgctaagaaa tagagtgcca ataagagcta gcaaaattcc ttctttaatg
      721 attttatgag gtgaattctg ctttaagcgc cagttcgata gccaagctcc taaaatagtt
      781 gccgtagcca ctgcgcaccc catgaagcca tactgactct gattaaaatg aaacctctca
      841 ataaaaatag taggagcttc agagtagtaa ctaaacaata ttccattaaa aataccaatt
      901 agcactccaa aagcaattgt atagcggtca aaaatcattt ttttaccaat tactaccatt
      961 ttctgcacac tgaatggggt ggcgttcgct gtttttgttt ctggtagtcg ttttaaactc
     1021 cagaacagca atatcattcc cataactact aaaaataaaa aaaccacgcg aaagccgtaa
     1081 tattgtccga taaatccacc aattaatggc ccaattgccg gtgaaaatgc caaagcggct
     1141 gagatttttg caaataaatg gtggcgatca ttaccgtggt agttgtcacg caaaatggtc
     1201 tgtgttgtaa cagaacccgt acttgcgcca aatgcttgaa caaagcgtcc gataaaaagc
     1261 attgtaatat tatttgaaaa aaggcagacg aagcaaccaa gaatatagat aaatatccca
     1321 aagttcattg cttttcgtcg acctaaaaaa tcggaactaa cgccccaaaa gaagacacca
     1381 actgcaaaag caagaaagta gatgcttaaa gtcatttgag ccaaatttaa tgagacgccg
     1441 tagctcgtag caatctccgt taaagaaggc gtataaatag tttcgctaat ttgtggaaac
     1501 cccacaaggc acacaagtaa tgctaaattt attttctttg tttcgatgtt tttttccata
     1561 aaattctctc ctgaataagt tatttatctg ggaaaaaaac atctttcaca gggaaatggt
     1621 gggaccatga ttttaatacg ctcgtaaaaa agcatgcagt cacccctttc tattttaaac
     1681 ggagaaggtt ccgttttttc gttaaagttt attgtagtat aaatgggtgg aaagataaag
     1741 tgttggtgga cgattgaata aatatacact gatatttact tgaattcagc atttaagtga
     1801 acaagttcaa atatatgtgg ttaagttaag ctggtatatg aaacttttgt gactatcaag
     1861 cttgaggctg aatagaaaca tgtataatga gctgtctagc gcttttttat tctgaaaatg
     1921 gagtttttgt aacacgatat gtgtagaaaa tgcactaaga cactataact ttagctattt
     1981 aggataagaa tggagtcgtt cattacattt tggttataca ttactttttt gtgttacatt
     2041 gggaatagtt ggaatattat aaaagtaaaa atttggaggt ttcataggga aggatatatt
     2101 ctaacctgtt tatttggtta tgcaatataa ctattaattg gaaagagggg gagaatacaa
     2161 tgaagagaaa agtatgtgtt ttagcgatag cattgcctac agtgttatca ccgatgggcg
     2221 ccttagctgc tcaaaatcta aatgaaggag agactagctt agattcacta atgagcgcaa
     2281 ataaaacagg tgaaaaagtg attttttctg agaccacaac aggaaaaaaa cctctattaa
     2341 aagcagcgca atcagctgga ggcggtactt tctgggttac atggggacaa gatagacatt
     2401 attcaaatta tcagcattat aaaaaaatgc atagatcaag tgcctctaat ttcaggacga
     2461 cagtaagaag taggtgggaa ccaaagagca atctagcaag tg
//
LOCUS       DASDXX010000260         2478 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.261, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000260 DASDXX010000000
VERSION     DASDXX010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.261"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            89..457
                     /locus_tag="U0280_002754"
     CDS             89..457
                     /locus_tag="U0280_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2272674.1"
                     /translation="MSEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQ
                     GNHRLYSLQDIDVLLEIKDYLNDGLNIAGIKKMYQMQQKESKEPLTDDDVRKILRKEM
                     QQAGRFVKQDATGKQQLPRF"
     gene            528..1862
                     /gene="glnA"
                     /locus_tag="U0280_002755"
     CDS             528..1862
                     /gene="glnA"
                     /locus_tag="U0280_002755"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEM2272675.1"
                     /translation="MAKYTKEDIFRFADEQNVKFIRLQFTDILGIIKNVEIPVSQLKK
                     ALDNKIMFDGSSIEGFVRIEESDMYLFPDLDTWVVFPWTAEKGKVARMICDIYNPDMT
                     PFAGDPRANLKRVLKEMEELGFTEFNLGPEPEFFLFKLDENRRPTLELNDSGGYFDLA
                     PTDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYEDAVTACDSIQTFKLVV
                     KTIARKHGLHATFMPKPLFGVNGSGMHFNMSLFNEKGNAFFDESGELELSQTAYHFLA
                     GMLKHARGYTAVTNPTINSFKRLVPGYEAPCYIAWSGKNRSPLVRVPSSRGLSTRLEL
                     RSVDPSANPYLAMAVLLKAGLSGIKDELTPPAPVDRNIYGMNEEEREATGIYDLPESL
                     GHALIELEKDDIIKAGLGEHIFEHFIEAKTIECDMFRTAVHPWEREQYLEIY"
     gene            2006..>2478
                     /locus_tag="U0280_002756"
     CDS             2006..>2478
                     /locus_tag="U0280_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEM2272676.1"
                     /translation="MQITLAILVFAFTLFFVIWQPRKLSIGWSACGGALIAILLGVVT
                     LSDVATVTGIVWNATLAFIAIIIISLILDKIGFFEWAALHMARLARGNGLLMFILISI
                     LGAFVAALFANDGAALILTPIVLAMVRALNFDEKKVFPFIIASGFIADTTSLPLVV"
BASE COUNT          788 a          417 c          524 g          749 t
ORIGIN      
        1 atatcttaca taaatttgac aaaacatctg acgtacatta taatgctact atcatcaaaa
       61 aataattatg ttttgagggg gaattgtcgt gagtgaaaag gaaatccgga gatcgatgcc
      121 gctgtttcca attgggcctg tgatgaagct aactgatctc accgctagac aaattcgcta
      181 ctatgaagac caaggattaa tccatccggc acgaaatcaa ggaaatcacc gtttgtattc
      241 acttcaagac attgatgttt tgctagagat aaaagattat ttgaatgatg gtctgaatat
      301 tgcgggaatt aagaaaatgt atcaaatgca gcaaaaagaa tctaaagaac ctttgacaga
      361 cgatgatgtg cgcaaaatac ttagaaaaga aatgcaacaa gctggtcgct ttgtaaagca
      421 agatgcgaca gggaaacaac aattaccaag gttttaaaaa gacaagaaga ggtatttact
      481 ttatttagaa gttaatataa ttagattatt taggaggaat ttagattatg gcaaaatata
      541 caaaagaaga cattttccgc ttcgcagatg aacaaaatgt aaaatttatt cgtttacagt
      601 tcacggatat tctcgggata attaagaatg tggaaattcc tgttagccaa ctaaagaaag
      661 cactagataa caaaatcatg tttgatggtt cctccattga aggctttgta cgaattgaag
      721 agtctgatat gtatttattc ccagacttag acacttgggt tgtgttccct tggacagctg
      781 aaaaaggaaa agttgcaaga atgatttgtg atatttataa tcctgacatg actccttttg
      841 ctggagaccc acgtgctaac ttaaaacgtg tacttaaaga aatggaagaa ctaggtttca
      901 cagagttcaa cttaggacct gagccagaat ttttcctatt caaattagat gaaaatcgtc
      961 gtccgacact tgaactaaat gatagtggtg gttacttcga tttagcacca accgacttag
     1021 gtgaaaactg tcgtcgcgat attgtgcttg aattagaaga aatgggcttt gaaatcgaag
     1081 cgtctcacca tgaagtggca ccaggacaac acgaaattga ctttaaatat gaagacgccg
     1141 ttacagcgtg tgatagcatc caaacattta aattagtcgt aaaaacaatt gctcgtaaac
     1201 atggtttaca cgcaacattc atgccgaagc cgctctttgg tgtaaatggt tctggaatgc
     1261 atttcaatat gtcactattt aatgaaaaag gaaatgcttt cttcgatgaa agcggagaac
     1321 tagaattgag ccaaacagct tatcatttct tagcagggat gttaaaacat gcccgtggct
     1381 atacagctgt tacaaatcca accattaact cattcaaacg attggttcca ggatatgaag
     1441 caccatgtta cattgcgtgg tcaggtaaaa accgtagccc gcttgttcgt gttccaagtt
     1501 ctcgtggact aagcactcgt cttgaattac gtagcgtcga tccatctgct aatccatatt
     1561 tagcaatggc ggtactactt aaagctggtt tatctggaat taaagatgaa ttaactcctc
     1621 cggcaccagt tgatcgtaac atttacggca tgaacgaaga agaacgtgaa gcaactggca
     1681 tttatgatct accagaaagc ttgggccacg ccttaatcga acttgaaaaa gacgatatta
     1741 tcaaagctgg tttaggtgag cacattttcg aacactttat tgaagcaaaa acaattgagt
     1801 gtgatatgtt ccgcacagca gttcaccctt gggaacgcga acaatatctt gaaatttatt
     1861 aatagtcaaa agcacgtttc ctatagatgg aaacgtgctt ttttattgga aaatcggttt
     1921 caaatgtttg atgtttggca aatagaggca tatatttaaa aatgtgctag tgaaagggag
     1981 gttttcatta gagaaagggg aagaaatgca gattacttta gctattttag tatttgcctt
     2041 cacattattt tttgtgattt ggcaaccaag aaaattatca atcggatggt cagcttgcgg
     2101 aggtgcgcta attgccatat tacttggcgt cgtcacttta tcagatgtcg caacagttac
     2161 tggaattgtt tggaatgcga cgctcgcttt tattgctatt ataattattt cattgatttt
     2221 agataaaatt ggcttttttg agtgggcggc tttacatatg gcgcgattag caagaggtaa
     2281 tgggttatta atgtttattc ttatttctat tttgggagct ttcgttgctg cgttgtttgc
     2341 taatgacggg gcggcgctaa ttttgacacc aattgttcta gcgatggtgc gagcgctgaa
     2401 ttttgatgag aaaaaggtat ttccatttat tattgctagc ggttttatag cagatacgac
     2461 gtccttgccg ctcgtagt
//
LOCUS       DASDXX010000261         2467 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.263, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000261 DASDXX010000000
VERSION     DASDXX010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.263"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..611
                     /locus_tag="U0280_002757"
     CDS             <1..611
                     /locus_tag="U0280_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272677.1"
                     /translation="VENSTTYIEKQSELEMIEEKLRDEKGSSINAVAEIQIKIDKLNA
                     EASDLKADLAKFDSNQKQENRIQELEEEAAEKGAKYDELEMGLYLIERFNKAKCNLLE
                     DKINSKFKYVSFKLFKTQINGGIDECCETIYNGVPYNSGLNNAARINGGLDIINALTE
                     HVQVLAPIFVDNRESVTELIDTESQLVSLIVSESDENLRVEA"
     gene            612..1397
                     /gene="bet"
                     /locus_tag="U0280_002758"
     CDS             612..1397
                     /gene="bet"
                     /locus_tag="U0280_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HEM2272678.1"
                     /translation="MMAKENYSDPNGKLLNSITTFEVNGEEVKLSGNIIRDYLVSGNA
                     EVTDQEIIMFLQLCKYQKLNPFLNEAYLVKFKNTKGPDKPAQIIVSKEAFMKRAETHE
                     QYDGFEAGVIVERGGEIIELEGAVSLASDKLLGGWAKVFRKDRNRPVSVRISEKEFNK
                     RQSTWNTMPLTMMRKTAVVNAMREAFPDNLGAMYTEEEQGSLQNTETSVQQEIKQNAN
                     AEVLDIPSQQNEVPDFKEVREPEHVEMPPIYDEQQSTPPARPY"
     gene            1357..2100
                     /locus_tag="U0280_002759"
     CDS             1357..2100
                     /locus_tag="U0280_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2272679.1"
                     /translation="MMSSNLHRLLDLINMEIKTIASGSTGNAYVISSGRSQLLIECGV
                     NFDKIRKALNFDLSAVEACLISHEHGDHVAGVKKMLRTSSIKIYASEGTLSALNVPDS
                     RQFILKEKNAQNIGEWIILPFQTEHDAKEPLGFMIQRNNERLLFITDSYFVRYKFKNI
                     NYLMIECNYSADILEENVINKVIHPVQKKRVLQSHFSLENVKEFLNANDLSQLREIHL
                     LHISSSNGDPNMFKNEIQALTGVPVYVLE"
     gene            2106..>2467
                     /locus_tag="U0280_002760"
     CDS             2106..>2467
                     /locus_tag="U0280_002760"
                     /inference="COORDINATES: protein motif:HMM:NF025107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272680.1"
                     /translation="MENEIRVKGIFEQGYGIIAKALMRDKDLSIEAKSIYSYLASFAG
                     AGNTAFPSVELIIAELNISRDRFYKHRKQLVEKGFITVIQKKGDKGLQQRNIYQLNPI
                     LKPQSSFKDTDSPQSNYP"
BASE COUNT          937 a          373 c          501 g          656 t
ORIGIN      
        1 aagttgaaaa ctctactact tacatcgaga aacaatctga actggaaatg attgaagaaa
       61 aactgcgtga tgaaaaaggt tcttctataa atgcagtagc agagattcaa atcaaaattg
      121 ataaattgaa tgctgaagca agtgatttaa aagctgattt agcaaaattt gatagcaatc
      181 agaaacaaga aaatcgcatt caggaattag aagaggaagc agcagaaaaa ggcgctaagt
      241 acgacgaatt ggaaatggga ttatatctca ttgaacgatt taataaagca aaatgtaatc
      301 ttcttgaaga caagattaac agcaagttca aatatgtttc attcaagtta tttaaaacgc
      361 aaattaacgg tgggattgat gagtgctgtg aaacgattta caacggtgtt ccttacaatt
      421 ccggattgaa caatgccgct agaataaacg gtggtttgga cattattaac gcactaacag
      481 agcatgttca agtgcttgct ccaatttttg tagataatag agagtcggta actgaactaa
      541 ttgatacaga atcacagcta gttagcttaa tcgtttctga gtcagatgaa aatttgagag
      601 tggaggcata aatgatggca aaagagaatt atagcgaccc aaacggaaaa ttgctcaata
      661 gtataacgac atttgaagtg aatggagaag aagtaaagct atctggcaat attattaggg
      721 attatttagt aagtggaaat gcagaggtta cagaccagga aataatcatg tttttgcagt
      781 tatgtaaata tcaaaaatta aatccatttc ttaacgaagc ctacctagtt aaatttaaaa
      841 atacaaaagg tccagataaa cccgcacaaa taattgtttc taaagaagca tttatgaaac
      901 gtgctgaaac acatgaacaa tatgacggat tcgaagcagg tgtaattgtg gaaaggggcg
      961 gtgaaattat tgaattagaa ggcgcagttt ctctagcctc agacaaatta ttagggggct
     1021 gggcaaaggt ttttagaaaa gatagaaata ggccagttag tgtaagaatc agtgaaaaag
     1081 agtttaataa aagacaatca acttggaata ccatgcctct aacaatgatg cgtaagaccg
     1141 cagttgttaa tgcgatgaga gaagcttttc cggataactt aggtgccatg tatacagagg
     1201 aagaacaagg ttcgctacaa aacactgaaa caagtgttca acaagaaatt aaacaaaatg
     1261 ctaatgcaga agtgttagat attccttcac agcaaaatga agtgccagat tttaaagaag
     1321 taagagagcc cgagcatgta gaaatgccac cgatatatga tgagcagcaa tctacaccgc
     1381 ctgctagacc ttattaatat ggaaattaag acaatagcaa gtggaagtac agggaacgcc
     1441 tacgttatta gtagcgggcg ctcccaactg ctaattgaat gtggtgtaaa cttcgacaaa
     1501 ataagaaaag cactaaattt tgatttatcg gcagtggaag cctgtttaat tagccacgag
     1561 catggagatc acgtcgctgg cgtcaaaaag atgttacgca catcaagcat taagatatac
     1621 gcatcagaag gcaccttgtc tgctttaaat gttccggaca gtcgacaatt cattttaaaa
     1681 gaaaaaaacg ctcaaaacat cggagaatgg attattttac cgtttcaaac tgaacatgat
     1741 gcaaaagagc cacttggttt tatgattcaa cgcaataatg aaagactact tttcattaca
     1801 gatagttatt ttgtaagata caaattcaaa aacatcaact atttaatgat tgagtgtaac
     1861 tattcagcag atattttaga agaaaatgta ataaataaag ttatacatcc agttcaaaaa
     1921 aagcgtgttt tacaatcgca tttcagctta gaaaatgtaa aagagttttt gaacgcaaat
     1981 gacttatcgc aactaagaga aattcacttg ctacacattt cttctagcaa cggagatccc
     2041 aatatgttta aaaatgaaat tcaagcatta actggtgtgc cagtttatgt actggagtga
     2101 aaaaaatgga aaacgaaatt cgtgtgaaag gaatatttga acaaggatac ggaataatag
     2161 caaaagcttt gatgcgagat aaagacttga gtattgaagc taagagcatt tattcctatc
     2221 ttgcaagttt tgcgggtgca ggaaatacgg catttccttc tgtcgaactt attattgcag
     2281 aattaaatat tagtagagat agattttata agcaccggaa acaactagtt gagaaaggat
     2341 ttatcactgt aattcaaaaa aagggtgata aaggtctaca acaaagaaat atatatcaac
     2401 taaaccccat tttaaagccg cagtcgagtt ttaaggacac ggatagtccg cagtcgaatt
     2461 atccgga
//
LOCUS       DASDXX010000262         2395 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.264, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000262 DASDXX010000000
VERSION     DASDXX010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.264"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            18..1001
                     /locus_tag="U0280_002761"
     CDS             18..1001
                     /locus_tag="U0280_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272681.1"
                     /translation="MTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQMQHLFGLV
                     PNLKASYLEKRISELVHQGSILSTENGYVTQGQLVAMFENDYPNFQGFTFQGQAFAFF
                     AHLRLAVQVVSNIHHHESYYLPVIRDKKVQQFIKHWVKHRDKSNLANQLYGELVAWMN
                     KLAVARPAFLVERFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLLIAMKKTPE
                     EWPILASLVPDELNGLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDHFVEIRATL
                     KEANVPYLPEETIIQTIITKKWNLLREIKAEFPDLDYYQIRLAVVSREGKQ"
     gene            998..>2395
                     /locus_tag="U0280_002762"
     CDS             998..>2395
                     /locus_tag="U0280_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HEM2272682.1"
                     /translation="MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKT
                     ICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQVLANI
                     HLYKFIFLSPEMLNNETVKNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQE
                     AEFPVTMVLTATATKKVRADILTQLHLTDCAQIVYSVNRPNISLQVEKFSNQHVKKDR
                     LYALVRKLQTPGIIYFSSKKLAESTALELSEIADLRVAYYHGDMDTEDRIIIQQQFVY
                     GQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAGRDGENSVAILLYAN
                     GDEFIQMQLADQDIPDANLMNLTNEQRKTLPETEQRFIEYYQRSGLSTKELTDKMDYR
                     KKWKRANLQQFIGYLHTTDCRRNYILRYFEETPLEVTPENCCDLDGAEIIDFEKRPIT
                     QQKEIPTWEAYLAYLL"
BASE COUNT          807 a          393 c          490 g          705 t
ORIGIN      
        1 agctagataa ctatattatg acaattttag aaaaaagtat cacacctaga aaattaccat
       61 ttttacatac tgttttagct ggaagaagaa ctggacaagc tgttcaagat atccatcttt
      121 ttcaaatgca acatttattt ggactagtgc caaatttaaa agcaagctat ttagaaaaac
      181 gaatttcgga attagtgcac caaggtagca ttctttctac tgaaaatggt tatgtgacac
      241 aagggcaact agtagctatg tttgaaaatg attacccaaa cttccaaggt tttacatttc
      301 aagggcaagc ttttgctttt tttgcccatt tgcgactcgc agttcaagtt gttagtaaca
      361 ttcatcatca tgaaagctat tatttaccag ttattcgtga taagaaagtc caacaattta
      421 ttaagcattg ggtgaagcac cgagataaat ctaatttagc gaatcagtta tacggtgaac
      481 tcgttgcatg gatgaataaa ttagcagttg ctcgaccagc gtttttagtg gaacgttttt
      541 ctgggggcga attaatgggc tatactacag aacaaattgc ctcaaaatat caagtggaga
      601 agtgggacgt ttattttgag gtgctccatg aggttcaccg tttgcttata gcgatgaaaa
      661 aaacccccga agaatggccg attctagcta gtcttgtacc ggatgagctc aatgggttaa
      721 ctagttctgc catgcaaacc tatgtattat ggcaaaatgg agctgattta gaagcaatcg
      781 agcgaattcg gaatttgaaa aagagtacca tccatgatca ctttgtagaa atccgagcta
      841 ctttgaaaga agcgaatgtt ccttatttac cagaagagac aatcatccaa acgattatta
      901 caaagaaatg gaatttactg cgtgaaataa aagcggagtt tcctgatttg gattattatc
      961 aaattcggtt agcagttgtt agtagggagg gtaagcagtg aacttagaaa aggaattaaa
     1021 agaatatctt ggttttgatg agttccgccc tggccaaaaa gaagtaattg aaacagcttt
     1081 agcaaagcga aattgttttg ctatgttacc tactggaact ggaaaaacca tttgttatca
     1141 attagcgggt catttgatgg atggattagt attgattgtt tctccacttc tctcccttat
     1201 gcaagatcaa atggagcgaa tgcgtgctca cggagaaaag cgagtagcag cgcttaatag
     1261 ctttttaaaa cgagaagaaa aagggcaagt ccttgcaaac atccatttat ataaatttat
     1321 ttttttatca ccagaaatgc taaataatga aacggtgaaa aacttactat taaaacaaag
     1381 aatcagctta tttgtcatag atgaagcgca ttgcatttcg cagtggggac atgattttcg
     1441 ccctgattat ttgatgttag gtaagttcat tcaagaagcc gaatttcctg tgactatggt
     1501 gctgacagct acggcaacca agaaagttag agcagatatt ttaacgcaat tacatctaac
     1561 ggattgtgcg caaattgttt attctgttaa tcgaccgaat atttctttac aagtggagaa
     1621 attttctaac cagcatgtaa aaaaagaccg tttatatgcg cttgttcgca aactacaaac
     1681 acccggaatt atttattttt ctagtaaaaa attagcggaa agcactgcgc ttgaattaag
     1741 cgaaattgct gatttaagag tagcttatta tcacggggat atggatacag aagatagaat
     1801 tattattcag caacaatttg tttacgggca gctggatgtt atttgcgcca ctagcgcatt
     1861 tggaatgggg atagataaag ctgacattcg ctatgttatt cattatcata tgcctgcaga
     1921 tttggaagca tatttgcaag aaattggtcg agcaggtcgt gatggcgaaa acagtgtggc
     1981 gattctctta tacgcgaatg gagatgaatt cattcaaatg caattagccg atcaagatat
     2041 cccagatgcc aacttaatga atctgacgaa tgaacaacgc aaaacgttac ctgaaacaga
     2101 gcaacgtttt attgaatact accaaagaag tggtttaagt acgaaagaat taaccgacaa
     2161 aatggattat cgaaaaaaat ggaagcgggc taatttacaa caatttattg ggtatctgca
     2221 tacaacggat tgtcgccgta attatattct acgatacttt gaagaaacgc cgttagaagt
     2281 caccccagaa aactgttgtg atttggatgg agcagaaata atcgattttg aaaaaagacc
     2341 aataacacag caaaaagaaa ttccaacatg ggaagcttat ttagcttatt tattg
//
LOCUS       DASDXX010000263         2390 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.265, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000263 DASDXX010000000
VERSION     DASDXX010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.265"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            95..457
                     /locus_tag="U0280_002763"
     CDS             95..457
                     /locus_tag="U0280_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HEM2272683.1"
                     /translation="MSFMQLKEGKELITARNKIEKDLKQQLKDKNLTSPIYEDRVNAY
                     LYYWDMEQNLLRDINERGFYVEYDNGGGQKGTRKNDSALLLQKYTKQAMDILQFLSLK
                     PPSESVKNIGSEPHDPAL"
     gene            441..2093
                     /locus_tag="U0280_002764"
     CDS             441..2093
                     /locus_tag="U0280_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HEM2272684.1"
                     /translation="MTQLSNVYKWHPAISEWMRMVENDEVENCKEQKLLMKYVRGRLE
                     QKNVIIEHNILDTAIATAERYFYKLFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIY
                     AGRGFGKNGLLSCMIFECTTKNHGVDHYNIDIVATSEDQAKTSFEDIYNMLEENKDTM
                     KNVYRWNLVAIQHRKNGSTIKYKTSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSG
                     LGKKERSRRFHLTTDGYVRGSVLDDRKVLAQQVLNGEKPNSKMFPFICKLDSPDEVQN
                     KTKWAKANPMILYYKPLRIEIDQHWDDAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWD
                     DIKATNQPMPSLKMAPAIGGIDFADVRDFCAVGLLFKKEGKYIFKHHTFICAESLKIT
                     KFKFPIHEAVEKGLATIIHDNYIDEDYPLQWFLEQAKEHRIINIATDSFRYKSLKEAF
                     TSAGAPLIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARGEK
                     TYIKIEPKTRKTDGFFALLHTLMLDEELPETREIKLYDVTTY"
     gene            2107..>2390
                     /locus_tag="U0280_002765"
     CDS             2107..>2390
                     /locus_tag="U0280_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM2272685.1"
                     /translation="MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEKLKELSIKKWAID
                     SCANKIANTLSCAEVLTYEKGEEVRKKNWYMFNVEANQNQNATEFWKKAI"
BASE COUNT          894 a          330 c          478 g          688 t
ORIGIN      
        1 gtaaaaattt taaaactttt tgagagggtg tgacaacgtg ggagagtagc gccaaaaaat
       61 gcaacgttaa attttcacat gagggggtgg tattgtgtcg ttcatgcaat tgaaagaagg
      121 aaaagagtta ataactgcaa gaaataaaat tgaaaaagat ttaaaacagc aattaaaaga
      181 taaaaatcta actagtccta tttatgaaga tagagtaaat gcttatctgt attattggga
      241 tatggaacag aatctattaa gagatattaa tgagcgtggt ttttatgttg aatatgacaa
      301 tggtggtggt caaaaaggca cccgtaaaaa tgatagtgca ttattacttc aaaaatacac
      361 taaacaagca atggatattt tacaatttct atctctaaaa ccaccgtctg aatcagtaaa
      421 gaatattgga agtgaacctc atgacccagc tctctaatgt atataaatgg catccagcaa
      481 tttcagaatg gatgcgtatg gttgaaaatg atgaagtaga aaactgtaaa gaacaaaaat
      541 tattaatgaa atatgtcaga ggtaggttag aacaaaaaaa tgtaatcata gaacataata
      601 ttttagatac cgctattgct acggcagagc ggtattttta taaacttttt ccgttccaaa
      661 aattcatata tgcatttgta tttgctgtat ttgaaataga tgaagatggc gataagcaat
      721 taatgtttaa cgattatttt atttatgctg gtagaggttt cggtaaaaat ggtttattaa
      781 gttgcatgat ttttgaatgt acaactaaaa atcatggagt ggaccattac aatatcgata
      841 ttgttgcgac atcggaagac caagcgaaaa caagttttga agatatttat aatatgttag
      901 aagaaaataa agacacgatg aaaaacgtct atcgctggaa tttagttgca atacaacatc
      961 gaaaaaatgg atcaacgatc aaatataaaa catcaaatgc aagaacaaaa gatggttcaa
     1021 gacctggtgc agttgccttt gatgaagaac acgcatatga agattattca aattatgcag
     1081 tacacacttc tggattaggt aaaaaagaac ggtcacgtag attccattta acgaccgatg
     1141 gttatgttcg tggaagtgtt ttagatgaca gaaaagtatt agcacaacaa gtgttaaatg
     1201 gagaaaagcc aaactcaaaa atgttccctt tcatttgcaa gttggatagt ccggacgaag
     1261 ttcaaaataa aacaaaatgg gcaaaagcaa atcctatgat tttatactac aaaccattgc
     1321 gaatagaaat tgaccaacat tgggatgatg cgcaatcatc ttctgaaatt atggttgagt
     1381 ttatgactaa aagaatgaac tgtccaactc aagatccaac cactgtagca gtaaaatggg
     1441 atgatattaa agcaacaaat caacctatgc catcgttaaa aatggctcca gcgattggag
     1501 gtatcgattt tgcggatgtt agagactttt gtgcggtagg gttgttattt aaaaaagaag
     1561 gtaagtatat ctttaaacat catacattca tttgcgctga gtcattgaaa atcacgaaat
     1621 ttaaatttcc gattcatgaa gcagtggaaa aaggactggc aactatcata catgataatt
     1681 atattgatga agattatcca cttcaatggt ttttagaaca agcgaaggaa caccgcataa
     1741 taaatattgc aacagatagc ttcagatata aatccttgaa agaagcattt acgagtgcgg
     1801 gtgcgcctct gattcaagtc cgttctggtc catattcgca taacagatta tcaagcatgg
     1861 tagataaact atttgcctcg cataaaataa tttttggcga tgatatgctg atgcgctggt
     1921 actgtaacaa tgtagctatt aagtttgatg cgcgtggtga aaaaacatat ataaaaattg
     1981 aaccgaagac acgtaaaacg gatggttttt ttgctttgct gcatacacta atgcttgatg
     2041 aagaattgcc agagacacga gaaataaaac tgtatgatgt gactacgtac taggaggtga
     2101 taaatattgg gattcaaaag ttgggtgagt ggatttttta atgaagaaca aagaacattg
     2161 aatttaacgg acacggtatg gtgttctatt ccttctgaga aactaaaaga attgtctata
     2221 aagaaatggg caattgattc ttgtgctaat aaaattgcca acactctatc ttgtgcagag
     2281 gtactcacct atgaaaaagg tgaagaagtc cgtaaaaaaa attggtatat gtttaatgtt
     2341 gaagcaaatc aaaatcagaa tgcaactgag ttttggaaga aagcaatata
//
LOCUS       DASDXX010000264         2365 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.266, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000264 DASDXX010000000
VERSION     DASDXX010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.266"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(571..996)
                     /locus_tag="U0280_002766"
     CDS             complement(571..996)
                     /locus_tag="U0280_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF722 domain-containing protein"
                     /protein_id="HEM2272686.1"
                     /translation="MSKRLRKAQYKLIEDELRYYHSTKKEILEKRANIVMGSIHQEFK
                     DENQGGGSSGQISNEVEQRVMLLQVDKEIQRMSDIVRAIDTVLSTLSDEDKQLIHFRY
                     WDRSRPTWLWIACKLNISESTAKRKRKEIIYKIAARLGY"
     gene            complement(1009..1236)
                     /locus_tag="U0280_002767"
     CDS             complement(1009..1236)
                     /locus_tag="U0280_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272687.1"
                     /translation="MEEYVNISLDKYERLKMFENDKYEKDAKEFLKKFTNFTTIFGNQ
                     NEEYYTAHVNKEELKKLIEQRLGKTCEIEFY"
     gene            complement(1298..1453)
                     /locus_tag="U0280_002768"
     CDS             complement(1298..1453)
                     /locus_tag="U0280_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009930672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272688.1"
                     /translation="MFKTLSSFYFSMIFIIVLLRAFGFLSLAEAEFSLLLIISLVMVE
                     DMNGSRK"
     gene            complement(1454..1987)
                     /locus_tag="U0280_002769"
     CDS             complement(1454..1987)
                     /locus_tag="U0280_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HEM2272689.1"
                     /translation="MKIYHTETQEDFDALLEELKNEWYSWFFGEVIPSYDSELWERYK
                     QDTVVHIEEDGVSWGSLSYAKYLHPNTPIEKYKAKQDEVAKWFGGVTKAMKAFSSNGV
                     SMKNENNDKVNNPAHYTAGGIETLDYIKAKVSDYSSYAVGNILKYVSRYEHKNGIEDL
                     KKAQFYLNNLIEWMESD"
BASE COUNT          707 a          489 c          337 g          832 t
ORIGIN      
        1 ccctatataa aaagcccaac actaatgtgc tggacttcat tgttctatgt atccgtagtt
       61 ataaaaccag gcggacttct acggtagcat tcgtcaatgc tttgtctttc ttctaattaa
      121 ccctcagacg ggctcgcgga cgtcagaaag cggaaattat aaagccttcc catcagaaca
      181 tatctgctat taaatagaga gaaggtattg tcgtttaaat atactcggca aggatttgca
      241 ccttgcaaca tcaagccgaa gcgtgatata ggactcatcc ataacgtcta cctgttccgt
      301 cacgagtatt gagattgaac aagaaggtgt ctcttgttgg gactagtgag attggaatgg
      361 gatgcgtctc ccatcaagac caacgatcag ataataagcc tctgtccggc aacatagcaa
      421 cctcctgcta tatcatcatc atgtgattat atatgagaag tgaagtgcag acttaatata
      481 ttattttatt ttgtaatcat cttcacttct ctactctata atattaacat ggaaaaacat
      541 gtcaaacggg tcataaacgg gtcaactttt ttaataacct aatcgcgcgg caattttata
      601 tataatctct ttccgttttc ttttagccgt actttcactg atattcaact tacaagcaat
      661 ccacaaccag gtaggtctac tcctatccca gtatctaaaa tgaatcagtt gcttatcttc
      721 atcagacaaa gtgctcaata ccgtatcaat tgctctgaca atatcagaca ttctttgtat
      781 ttctttatcg acttgtaata gcataacacg ttgttctact tcatttgata tctgaccaga
      841 tgaaccaccg ccttggtttt cgtctttgaa ttcttgatgt atagatccca tgacaatgtt
      901 tgcacgtttt tctagtattt ctttttttgt agaatgatag taacgaagtt catcttcaat
      961 aagtttatat tgtgctttac gtaatcgttt tgacatttaa tcactctcct aataaaattc
     1021 tatctcacac gttttgccta gtctttgttc aattagtttt ttcagttctt ccttgttgac
     1081 atgcgccgtg taatactctt cattttgatt tccaaatatc gttgtgaagt tagtaaactt
     1141 ttttagaaat tccttagcat ctttttcgta tttatcattt tcaaacattt ttaacctttc
     1201 atatttatct aaactgatat ttacatattc ctccattgtc aaccagcccc aattttttta
     1261 tattttagca atacttgtaa aggcgaagag tcacttgtca tttacgactc ccattcatat
     1321 cctcaaccat gacaagagaa atgattaata gtaaactaaa ttctgcttct gcaagactaa
     1381 gaaagccgaa agcgcgcaat aatacgataa tgaaaatcat agaaaaataa aatgaactta
     1441 atgttttaaa cattcaatca ctctccatcc attcaatcaa attatttaaa taaaattgcg
     1501 ctttttttaa atcctcaatg ccattcttgt gctcgtatct tgagacatat ttaagtatgt
     1561 ttcctacagc atatgacgaa taatcagata cttttgcctt gatgtagtct agtgtttcaa
     1621 taccacctgc tgtgtaatgt gcaggattat ttactttgtc gttattttca tttttcatag
     1681 atactccatt ggatgaaaat gctttcatgg cttttgtaac gccaccgaac cactttgcaa
     1741 cttcgtcttg tttcgctttg tatttttcaa ttggtgtgtt ggggtgtaaa tatttagcat
     1801 aagaaagact cccccaactt actccatctt cctctatatg cacaacagta tcttgcttat
     1861 accgttccca aagttccgag tcatatgacg gaataacctc tccgaaaaac cagctatacc
     1921 attcattttt caattcttcc aacaatgcat caaaatcttc ttgtgtttct gtgtgatata
     1981 ttttcattcg tttttcctcc ttgtttaatt gtgtactcgg cgaattatgt gatttagata
     2041 agtgcggcat tggggcaaac aatatcacca acaaaactcc aaaaaacact ccaggtataa
     2101 aagcaatact acctgctacc attatcatat ttcctatctg cttgatttcc acatataaca
     2161 agaaatcttt tcatcaatgt catccctcca ttttccgccg actataccgt tacaaaaccc
     2221 attttgtaac acgtaaccac tcaaatccct tctgacagaa cgtggttaca ggttacaaaa
     2281 aaatcggcga aaaagttttt atttttgtac tcttttctta aatataaata aatatatata
     2341 ctttttatta ataaaaaaat gtaac
//
LOCUS       DASDXX010000265         2344 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.267, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000265 DASDXX010000000
VERSION     DASDXX010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.267"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            44..622
                     /locus_tag="U0280_002770"
     CDS             44..622
                     /locus_tag="U0280_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272690.1"
                     /translation="MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKIP
                     KDIKELEDNSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYL
                     SDGKYVAVENYIALDKGQEYTIFLGEKDKDTYPLSSMGYGKFGGSLKEDQAVLADFNI
                     LGEVQKFDFISENTEEVKNYQLIKEQVAGKYK"
     gene            729..1409
                     /locus_tag="U0280_002771"
     CDS             729..1409
                     /locus_tag="U0280_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM2272691.1"
                     /translation="MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDS
                     DFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITV
                     NKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYA
                     ENIIGLQFHFEMEKAGIETILQIDKAFITSGKYVQSVEVMREKDVPEDNKQMLEAILD
                     YLINPKTI"
     gene            complement(1434..1793)
                     /locus_tag="U0280_002772"
     CDS             complement(1434..1793)
                     /locus_tag="U0280_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lin0512 family protein"
                     /protein_id="HEM2272692.1"
                     /translation="MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLL
                     PDGDLQNMVVNIKLALPCDEEKLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKE
                     DKNDLMYIVNASVETGY"
     gene            complement(1800..2258)
                     /locus_tag="U0280_002773"
     CDS             complement(1800..2258)
                     /locus_tag="U0280_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2272693.1"
                     /translation="MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFF
                     TARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTTAGKE
                     LENELGAAQRKQMAEIFANSSDTDGLHFTEVMEGYAKNRPGAALIKDFKE"
BASE COUNT          779 a          390 c          472 g          703 t
ORIGIN      
        1 agggaaggta agctgaataa tacatataag gaggactcta ctattgaaaa agattctagt
       61 gcccatatta ttgttagcaa caatcttagc aagctgttcc tcgccgaatg aaaaaataac
      121 caaagacact aaaatatcca agactatcac aataagagca gattacaaaa ttccaaaaga
      181 tattaaagaa cttgaggata atagtgctaa tattgttaaa gtgaaatttc ttcaaaataa
      241 aacgataggc aaggatggta gtactattag cgagatagaa attttgacta gttacaaagg
      301 aaacctagaa aaagggagta aagtagatat ttcagaaccg tggtatttaa gcgatggtaa
      361 atatgtcgct gttgaaaact atattgcatt agataaggga caagaatata ccatttttct
      421 tggagaaaaa gataaagata catatcctct tagtagtatg ggttatggta aatttggtgg
      481 aagtttaaaa gaggaccaag ctgttctagc agatttcaac attcttggag aagtgcaaaa
      541 atttgatttt atctcagaaa atactgagga agtaaaaaat tatcaattaa ttaaagagca
      601 agtcgcaggg aaatataaat gagtaaactt aaacacctga ttaataacca ggtgtttttt
      661 agagaaatct cagttgcaca aaccttagaa ttcggtcata atagaaaaaa atgacaggag
      721 ctgatcaatt gattattgat gtattgcaac atgtgccgca cgaaggacct ggacttatag
      781 cgaattgggc gagagaaaac cagcatcagt taaaaataca ttctctattt gaagaaaatg
      841 ctcatgttcc aaatgactcg gattttttaa ttgtacttgg aggacccatg ggaataaatg
      901 atacagccga atttccgtgg ttaaaagacg aacgtaagct aataaagcga ttaagtgaac
      961 agcataaacc tgtttttggt gtctgcctcg gcgcacaaca aatcgcagca acattcggaa
     1021 gcgaaatcac tgtaaataaa gaaaaagaag taggctggtt tcctgtcaaa agaacttccg
     1081 acaaattatc atttttccca gaatcattaa atgtgtttca ctggcatcaa gatacgtttg
     1141 cgttaccagc tggcgccacg cgtttatttg ctagtgaggg ttgtttgaac caagcttttt
     1201 tgtacgctga aaatattatc ggtttacagt ttcattttga aatggaaaaa gcggggattg
     1261 agacgatttt gcaaattgat aaggcgttta tcacatctgg aaaatatgtt caaagcgtgg
     1321 aagtgatgcg agagaaggat gttccagaag ataataaaca aatgcttgag gctattttag
     1381 attatttaat aaatccaaaa accatctgac gagaaagtca gatggttttt tctttagtat
     1441 ccagtttcaa cagaagcgtt gacgatatac attaaatcgt ttttgtcttc tttgtcttct
     1501 aagaaaatgc cgcttgtagt catcattccg ccagccattt tctcaatagt tacagtgcca
     1561 taagggataa tcgcgcgaat ggtatcttcg tcaagttttt cttcatcaca cggtagcgcc
     1621 aatttgatat taacaaccat gttttgtaag tcgccatctg gaagaagccc ttgaataccg
     1681 ggcatagagt tcgtaaaaat cgcatttctt acagctcgtt cggctgcttt tgtaatattt
     1741 tggccgtgaa catcaacgcc aaagccagtt tggataaata gaatttgttc catcataaat
     1801 cactccttaa aatcttttat caaagcggcg cctggtcggt ttttcgcata tccttccata
     1861 acttcagtga aatgtaatcc gtcagtatcg gaggaattgg cgaatatttc tgccatttgc
     1921 ttacgttgtg cggcaccaag ttcattttct aattctttgc ctgctgtagt taggaagatg
     1981 cagcgttggc gtttgtcgcg tctaccttgc tcgatcgtga gaagttcgcg ctctttcagt
     2041 tcagcgagtg gctggtgtag ggcctgtttt gatatttcta aaaaagttaa aagttcatta
     2101 attgtaagtc caggcatccg cgccgtgaaa aataaaatac gatgatgcaa tcttttgagt
     2161 gaatgtttgg caataatcaa atcagcggtc tctgtaaatg ctttataacc aaagtaaaat
     2221 aaagcgattt gttgattcat gttttgctca ttgttcataa atatacccct ttttctgtca
     2281 atatcaacag tatagcataa ataaggggac acaataacag ttagcgcatc acttttttag
     2341 aagc
//
LOCUS       DASDXX010000266         2314 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.268, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000266 DASDXX010000000
VERSION     DASDXX010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.268"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1634
                     /locus_tag="U0280_002774"
     CDS             <1..1634
                     /locus_tag="U0280_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2272694.1"
                     /translation="IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK
                     IKDLSSIKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKLTDITILSRLTKLD
                     TLSLEDNEISDIVPLSGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKSI
                     NHQTNLVVPNTVKNIDGSLVTPEIISDDGDYEKPNVKWHLPEFINEVSFIFYQPVTVG
                     KAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTE
                     KNGGHEWNFSTDYMSGNDFTLYAMFKAETTEKAVNLTRYVKYIRGNAGIYKLPREDNS
                     LKQGTLASHRCKALTVDREARNGGELWYRLKNIGWTKAENLSLDRYDKIEYDKGVTAY
                     ARVKNAPGNAVWTKPYNTAGATLVNKLSVYQGKNMRILREAKTPITTWYQFSIDGKVI
                     GWVDTRALNTFYKQSMEIPIQLTRYVSANKGNEAYYKVPVVDSPIKWGTLAKYKNQTL
                     IVDRTATVEGQLWYRIRTSSTFIGWTKAANLRAQK"
     gene            complement(1749..2234)
                     /locus_tag="U0280_002775"
     CDS             complement(1749..2234)
                     /locus_tag="U0280_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2272695.1"
                     /translation="MKGLKKMKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTN
                     PANIRKIMSNLKKSNLITTQTGKANPILARPPEEISLLDVYKSIEGNTNLIHVDPKTN
                     PDCIVGANIQQVLASKYDLLQQKIEFEMEKIKLDSIVRDISVLESKDRPQNMEIIEKY
                     L"
BASE COUNT          814 a          366 c          427 g          707 t
ORIGIN      
        1 atattaaatc cgttcaagga attcagtatt tacccaatgt gacaaagtta tttttaaacg
       61 ggaataaact aacagatata aagcccttag caaacttgaa aaatttagga tggctttttt
      121 tagacgaaaa taaaattaaa gacctaagtt cgatcaagga cttaaaaaaa ttaaaatcac
      181 tttctttgga gcataatggt ataagtgata taaatggact tgttcattta ccgcaactgg
      241 aaagtttgta tttgggaaat aataaactaa cggatataac gattctttca cgtttaacta
      301 aactggatac tttgtctctt gaagataacg aaattagtga tattgtgcca ctttcaggtt
      361 taactaaatt acagaatcta tatttaagta agaatcatat aagcgattta agagcgttag
      421 cagggcttaa aaatctggat gttttagaat tgtttagcca agaatgtttg aataaatcta
      481 ttaatcatca aacgaatcta gttgttccga acacagtaaa aaacattgat gggtcgcttg
      541 ttactccaga aataataagt gatgatggcg attatgaaaa accgaatgtc aaatggcatt
      601 taccagaatt tataaatgaa gtaagtttta ttttctatca accagttact gttggaaaag
      661 caaaagcacg atttcatggg agagtaaccc aaccactgaa agaggtttac acagtaagtt
      721 atgatgttga tggaacggta ataaaaacaa aagtagaggc agggacgcga ataactgcac
      781 ctaaacctcc gaccaaacaa ggctatgttt ttaaaggctg gtatactgaa aaaaatggtg
      841 gacatgagtg gaattttagt acggattata tgtccggaaa cgattttact ttgtacgcga
      901 tgtttaaagc ggaaacgact gaaaaagcag tgaatttaac acgctatgtt aaatatattc
      961 gcgggaatgc ggggatctac aaacttccaa gagaagataa ctcgcttaaa caaggaacgc
     1021 tagcctcgca ccgctgtaaa gctttaactg ttgatagaga agcgcgaaat ggcggtgaat
     1081 tatggtacag gttaaaaaat attggctgga ccaaagctga aaatctttcc ttagaccgtt
     1141 acgataaaat agaatatgac aaaggtgtta ctgcttatgc aagagtaaaa aatgcgccag
     1201 ggaatgcagt ttggacgaaa ccatacaata cagctggcgc aaccctcgtg aacaagcttt
     1261 ccgtctacca aggtaaaaat atgcgaatat tgcgcgaagc caaaacacca attactacgt
     1321 ggtatcaatt tagcattgat ggtaaagtaa ttggttgggt cgatacgcgt gcacttaaca
     1381 cattttataa acaaagcatg gaaataccaa tccaattaac tcgatacgtc agcgcaaata
     1441 aaggaaatga agcatactat aaagttccgg tagtagatag cccaatcaaa tggggaactt
     1501 tagccaagta taaaaatcaa acattaattg tcgatcgaac agccaccgtt gaaggtcagc
     1561 tttggtatcg gataagaact agctccactt tcattggttg gacgaaagct gctaatttaa
     1621 gggcacagaa atgacctacg aaaagctatt tctaaatatt ggggaagaaa aaagctacaa
     1681 ctttaaattt atgaaaaaag aactgattcg ctgaaaacgg atcagttctt ttttctttgg
     1741 acttattttt acaaatactt ttcgataatt tccatattct gcggccggtc tttgctttca
     1801 agtacagaaa tatcacgaac aatactatct aatttaattt tttccatttc aaattctatt
     1861 ttttgttgga gcaaatcgta tttactcgca agaacttgtt ggatattggc tccgacaatg
     1921 cagtctggat tggtttttgg atcaacgtga attaaattcg tattgccttc tatactctta
     1981 taaacatcaa gcagtgaaat ttcttctggt ggtctagcaa gaatcggatt tgctttgcca
     2041 gtttgcgtag taattaaatt ggactttttc aaattactca tgatttttct aatgttagcg
     2101 ggatttgttt ttacgctacc agcaataatt tcactcgata acaaattcgt atttttaaaa
     2161 atttctatat aagccaaaat gtggatagca tcactaaatt ggatagagta tttcattttt
     2221 ttcaatcctt tcaaattttc ttcttgactt atcttatcat aatgtttatt ataaaggtgt
     2281 aaattataaa tgtacagctt taatattaaa aaaa
//
LOCUS       DASDXX010000267         2272 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.269, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000267 DASDXX010000000
VERSION     DASDXX010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.269"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..2059)
                     /locus_tag="U0280_002776"
     CDS             complement(<1..2059)
                     /locus_tag="U0280_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2272696.1"
                     /translation="MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELSSL
                     DTSNIIAEEVAQEKPAEVENLEEIPTTDELMQNPDVREQPVADSDNPDLTVVSSGAYW
                     TIYRNTVNGEYSLHMFGNVPSSIPSAWKSYLSNIKHIEIEEATLTGSFETYFKSKIGG
                     FLALESVRIERSNLSGVTSFREAFFNPILQKVIIRDNDYPTVPSLLTMESMFENSYNL
                     TELDVSGLDTSAVTNMKNMFYKCSVLKELDLSNWDTSAVNNMNSMFGYCESLEKLNVS
                     NFDTSSVNDMHYMFRDCKALEKLDVSDFDTSSVTTMYGMFVNSTSLKELDVSNFNTSS
                     VTTMQGMFSTCRALEKLDVSNFDTSSVTTMLGMFAACNSLEELDVSNFDTSSVTNMYS
                     MFADCELLEKLDVSHFDTSSVTDMRTMFNNCQSLEKLDVSNFDTSLVTNMQGMFQNCT
                     ALKSLYLDNFTTAKTMTDMFTGTTSLTYLFVSHNLQSFYGLANTNWYDEKNWVQFSNL
                     SQLQTYHRNQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKE
                     GHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVVIPASISLNETSELKVEGI
                     NRGSKTLSVGLNQLATSISESNKLTLANTADTTVQCLAPLSWDGSENNPENAILTLAP
                     GSEI"
BASE COUNT          705 a          482 c          356 g          729 t
ORIGIN      
        1 ttatttccga acctggggct agggttaaaa tggcattttc cggattattt tcggaaccat
       61 cccaactcag cggtgccaag cattggactg ttgtgtctgc cgtattggcc aaggttagct
      121 tgttgctctc agaaatagat gttgctaatt ggtttaatcc cacggacaaa gttttacttc
      181 cacgattaat cccttctact ttcaattcag aagtttcatt taaagaaata gaagccggaa
      241 tgaccactgt atagttttct acccatttgg cgtagatagt tgtagataca gcagctggca
      301 atgaaaagtc aaacttatta gtgaaatttt gatcaagata ccacccgtca aagtaatgtc
      361 cttcttttac tggaatcact tcttcccagt actccccaga aattttattt tgtacctttt
      421 gttcctccgc gtcttcaaat tctccaccca tcgcatccat tgttagagaa aggaaagcgc
      481 cttttctata gccagtaggt tcactttgat ttcgatgata ggtctgtagt tgcgagagat
      541 tagaaaactg tacccaattc ttttcgtcat accagtttgt atttgccaac ccataaaaag
      601 attgtaaatt gtgactgaca aacaagtagg ttagggaggt ggttccagta aacatatctg
      661 tcatagtctt tgcggtagta aaattatcca gatataaaga ttttaacgct gtacaatttt
      721 gaaacatgcc ctgcatatta gtaaccagac tagtatcaaa attacttaca tctaatttct
      781 caagtgattg acagttatta aacatggtac gcatatcagt aacagaactc gtatcaaaat
      841 gacttacatc taatttctca agtaattcac aatcagcaaa catgctatac atattagtaa
      901 cggaactcgt atcaaaatta cttacatcta actcttcaag gctattacaa gcagcaaaca
      961 tgcccagcat agtagtaacg gaactcgtat caaaattact tacatccaat ttctcaagtg
     1021 ctctacaggt actaaacatg ccctgcattg tagttactga actagtatta aaattactta
     1081 catctaattc tttaagactg gtactattaa caaacatgcc atacatagta gtaacggaac
     1141 tcgtatcaaa atcacttaca tccaattttt caagtgcttt acagtcccta aacatataat
     1201 gcatatcatt cacagaactc gtatcaaaat tacttacatt caatttctca agtgattcac
     1261 agtatccaaa catgctattc atattattaa cggcactcgt atcccagttg cttaaatcca
     1321 gttccttaag tacgctacat ttataaaaca tgttcttcat attagttact gcactagtat
     1381 caagaccact cacatcaagc tccgtaaggt tgtaactatt ttcaaacata ctttccatag
     1441 tgagtaaaga tggtactgtc ggataatcat tatctctgat gatcactttt tgaagtattg
     1501 gattaaaaaa cgcttctcta aaagacgtta ctccagacaa attagaacgt tcaattctca
     1561 cgctctcaag cgctaagaaa ccaccaattt tacttttaaa ataagtttca aaacttcctg
     1621 tcaaagtagc ttcttcaatc tctatatgtt taatgttact caaataactc ttccaagcac
     1681 ttggtatact gcttggcacg ttgccaaaca tatgcaagct atattcaccg ttcacagtat
     1741 tgcgataaat cgtccagtaa gcacctgagc ttaccactgt taaatccgga ttatctgaat
     1801 cagcaacagg ctgctctcga acatctggat tttgcatcaa ctcatccgta gttgggattt
     1861 cttctagatt ctcgacctcg gctggcttct cttgcgcgac ttcttctgca atgatattag
     1921 aggtatccag agaacttagc tcctcttctg gaagcttatt cgttgtgtcc ctttcttgtg
     1981 cgatagaaac attagcgttc cccagtgcaa taaaaagcac agaaataata agcaccactc
     2041 gcatggaaaa cttcttcatc agctcccctc cttctttcgt agttaatttc tagatgcaaa
     2101 ctttctagct gcaacttaat tatagaggag tcgagaagca tttctggcca taaaatttta
     2161 acttcttaaa attttacggc ttagttggtg tgtttgcttt ttccattagt attgtacaaa
     2221 tgaaaaatag aaataaaaaa atccgagtaa cgatcattac tcggataaga ct
//
LOCUS       DASDXX010000268         2239 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.270, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000268 DASDXX010000000
VERSION     DASDXX010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.270"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(39..884)
                     /locus_tag="U0280_002777"
     CDS             complement(39..884)
                     /locus_tag="U0280_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEM2272697.1"
                     /translation="MANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDA
                     ERMVEKQRELKSLFYKEYKEMEVYVEKRRHQAEIAKEAGETKLANFALEEVAQYEEQL
                     EATKAHYDQASEQLEKLELRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDM
                     SWGSVSDYHEAQKQRDLAEEAEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQ
                     NFTTMVDEIIEREKQNFKKPEKASMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEE
                     NETDK"
     gene            complement(900..1214)
                     /locus_tag="U0280_002778"
     CDS             complement(900..1214)
                     /locus_tag="U0280_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272698.1"
                     /translation="MRAILIGVLIILLIAMILIVLLPAILATIGAVLGFWSLKKLLEA
                     RSVGEKVIYGILIGVGALIILANLKGILVVVIIGAIIYFLTRNKNKPRKNDDVFDYPY
                     NK"
     gene            complement(1442..1675)
                     /locus_tag="U0280_002779"
     CDS             complement(1442..1675)
                     /locus_tag="U0280_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272699.1"
                     /translation="MKNKVGIIAGAVGAVAGVLACAVVYVVKKQQPPTPFDEVNDIRT
                     RYADKEISETELEENNMISEGGVSSLQYEEKVK"
     gene            complement(1769..2227)
                     /locus_tag="U0280_002780"
     CDS             complement(1769..2227)
                     /locus_tag="U0280_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2272700.1"
                     /translation="MIKRTGEIVLAIIGLVLSILAQAFIAIIGLLMISGSKGKEGLTT
                     FYNNYYKTMNEWEIPKKEIPDPDRVLDFVQTLSWTALTGGLITLALGIFGIYYIFKNK
                     KPVFAGYLFLAAGVVSLLSTALISFIPALLFIVVAILCFVRKPKSTFSGL"
BASE COUNT          618 a          446 c          325 g          850 t
ORIGIN      
        1 taaaaaagcg cagaatgatt attctgcgct aattactttt atttatctgt ttcgttttct
       61 tcttcttttt tctctaattc tggaattaat acttcttttt cttcttttgg tttttctttt
      121 gcagcttctt tttcaagttc atttaattga tcttccatcg aagctttttc tggttttttg
      181 aaattttgtt tttcgcgttc aataatttca tctaccatag ttgtaaagtt ttgcgcttta
      241 tctttgatga tttctttgct tttctttgtt ttcttttcta gttcgtccat tagatcatca
      301 aaggattgag aaagttcttt gctcatatcc gctttctttt ctgcttcttc cgctaaatcg
      361 cgttgttttt gtgcttcatg atagtcacta acactacccc agctcatgtc atggataact
      421 ttgtccattt tttcggaagt ttctgttgca tttttttcag ccatttcagc taaatgttgg
      481 gttttaagat ttttccattt taagcgcatt tcgtgcatac gtagttctaa tttttcaagc
      541 tgttcggacg cttgatcgta atgtgctttt gtagcttcta attgttcttc atattgagcc
      601 acttcttcta aagcgaaatt agctagtttt gtttcaccag cttctttggc gatttctgct
      661 tggtgacgac gtttttcaac ataaacttcc atttctttat attccttgta gaaaagagat
      721 ttcagttcgc gttgtttttc taccatgcgt tctgcgtctt tcatttcttg ttttgtttta
      781 tccatatagt aacttactga attgcgacgt ttttcttcac gtttctcgat tttttcacta
      841 acttctttat tccattgttt cattttttca aaaaggtttg ccattttttt ctcctccaat
      901 tatttattgt atgggtagtc gaatacgtca tcattttttc ttggtttatt tttatttcta
      961 gttaggaagt aaatgattgc tccgataatt acaacaacca gaattccttt taagttagct
     1021 agaattatta aggcaccaac accaattaga ataccataaa taactttttc acctacggac
     1081 cttgcttcaa gtagcttctt aagtgaccaa aagccgagca ctgcaccaat tgttgctagt
     1141 atcgctggca ataaaactat aagtatcatc gcaattagta aaattattaa tacgccaatc
     1201 aatattgctc tcatacgcct acctcctaac ttccaaatgt agctgatata ttttctttta
     1261 ttactgtacc tatcataacc ctatctatca agtataataa cccgctgtag aaggaaattc
     1321 acctacaact tgagtcctat tgtctaacta caggataaca taatctacta taataagcag
     1381 tgttttctac ataaaaaaac agcttgttct cgcgtaacac aagatacaaa ctgcattctc
     1441 attatttgac tttttcttca tattgaagag atgaaacgcc accttctgaa atcatgttat
     1501 tttcttccag ttctgtttca gaaatttctt tgtcagcgta acgggtccga atatcattta
     1561 cctcatcaaa aggggtaggc ggctgttgct ttttaaccac gtatactact gcacaagcta
     1621 aaactccagc gacagctccc acggctccgg caataattcc tactttattt ttcacactat
     1681 caacctcctc ttgaaatcca ctattttatt ccctaaaaaa gtagaagtaa aacaaaaacg
     1741 agcttgaaaa gttcaaactc gtttcgaatt ataatccaga aaaagtgctc ttcggtttgc
     1801 ggacaaaaca aagtatcgca acaacaatga ataataacgc aggaatgaaa ctaattagtg
     1861 ctgtagaaag caacgataca acgcctgctg ctaaaaataa atatcctgca aaaactggtt
     1921 ttttattttt gaatatgtag taaatcccaa agataccaag tgcgagcgta attaagcctc
     1981 ctgttaatgc agtccaagat aatgtttgca caaaatctag tacacgatcg ggatcaggaa
     2041 tctctttttt cgggatctcc cattcattca ttgttttgta gtagttgttg tagaaagttg
     2101 ttaaaccttc ttttcctttt gaaccactta tcatcaatag accaataata gcaataaatg
     2161 cttgtgcgag tatacttaaa acaagaccaa taatagcgag tactatctca ccagttcgtt
     2221 taatcatatg aatatgcct
//
LOCUS       DASDXX010000269         2215 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.271, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000269 DASDXX010000000
VERSION     DASDXX010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.271"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            95..1981
                     /locus_tag="U0280_002781"
     CDS             95..1981
                     /locus_tag="U0280_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM2272701.1"
                     /translation="MPEKNIVLIGAGYAGVHAAKKLAKKYKKDKDVNITLIDRHSYHT
                     MMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVTHVDHDKKVVTTEHGSYPFD
                     YLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASREQDVEKRKAML
                     TFVVCGSGFTGIEMVGELLEWKDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADK
                     AERYMVKKGIEIMKNAAIVEVKPESIVLKSGEELPTSTLIWTAGVRANSDTKDYGMES
                     ARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDEEGKPTPQIVEGAEQTALTAAKSIIVE
                     MSGTGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAILMKHMVNLYYFFGIRSG
                     YYMWQYIMHEFFHIKDHRNIFRGWTSRYGNVLWVLPLRVYLGWFWIDEALSKIYGETT
                     WDKVSITNLKPLFNGIGSDSWLTATTSKMPFEWLQTAATSGASQAAGDAAGAAATNVT
                     TPILSHMPGWFQWIMELLMPNLDVALVMQKVVPFVELAIGLAMVVGLFTWLVSIGSAG
                     FLVMFTLSAMLGWDKFWALPASIALLNGAGRTFGLDYWAVPWFQKHLGHWWYGKPRSV
                     YRDK"
BASE COUNT          655 a          363 c          489 g          708 t
ORIGIN      
        1 ttctgttaaa ctatgatagg ttataataat actgtgggga attttggact cattttattt
       61 ttgtgaataa acttacaagg agttgaggaa gcatatgcct gaaaagaata tcgttttaat
      121 tggggcagga tatgcaggtg tacacgctgc taagaaatta gctaagaaat acaagaaaga
      181 caaagacgtt aatattacat taatcgatcg tcattcgtac catacaatga tgactgaact
      241 acatgaggtt gctggtggtc gtgttgaacc aactgcaatt caatatgatt tacgtcgttt
      301 gtttaataga acaaaagtta atcttgtaac tgataacgtg acacatgtag atcatgataa
      361 aaaagttgta acaacagagc acggtagtta tccgtttgat tacctagtac ttggtatggg
      421 cggagaacct aatgatttcg gaactcctgg tgttggcgaa aatggcttta cactttggtc
      481 ttgggaagat tctgttaagt tacgcaatca tattgaagaa actgtaacga aagcatctcg
      541 cgaacaagac gttgaaaaac gtaaagcaat gttaacattc gttgtttgtg gatctggatt
      601 tactggtatc gaaatggttg gggaactttt agaatggaaa gatcgtcttg ctaaagataa
      661 caaaattgac gcatctgaaa ttaaactagt tgtagtagaa gctgctccaa caatcctaaa
      721 catgcttgaa agaagagacg ctgacaaagc tgaacgttac atggttaaaa aaggtattga
      781 aatcatgaaa aacgctgcta tcgttgaagt taaacctgaa agcatcgtac ttaaatctgg
      841 cgaagagctt ccaacaagta cattaatttg gactgctggt gttcgcgcta actctgatac
      901 aaaagattac ggtatggaat ctgctcgtgc aggccgtttg aaagtaaacc aatatatgga
      961 agcagaaggt cttaaagacg tttatgtcgt tggtgacctt gcttactttg aagatgaaga
     1021 aggtaaacca actccgcaaa tcgttgaagg tgctgaacaa actgcattaa ctgcagcgaa
     1081 aagcattatc gtggaaatga gcggtactgg cgagaaagaa ccattccaag gtaaatatca
     1141 tggtgtaatg gtttctatcg gagctaaata cggtgttgct caccttggtg gtatgcactt
     1201 atctggttgg ttcgctattt taatgaagca tatggttaac ttgtattact tcttcggtat
     1261 tcgcagtggt tattacatgt ggcaatatat tatgcatgaa ttcttccaca ttaaagatca
     1321 ccgcaacatt ttccgtggtt ggacttctcg ttatggtaac gtactttggg ttcttccttt
     1381 acgtgtatat cttggttggt tctggattga cgaagctctt tctaaaatct acggtgaaac
     1441 tacatgggat aaagtaagta ttacaaattt aaaaccttta tttaacggta tcggttctga
     1501 ttcttggtta actgcaacta cctctaaaat gccattcgaa tggttacaaa ctgctgctac
     1561 atctggtgct agtcaagctg ccggtgatgc tgctggggct gctgcaacaa atgtaactac
     1621 tccaattctt agtcatatgc ctggttggtt ccagtggatt atggaacttc taatgccaaa
     1681 ccttgatgtt gctctagtaa tgcaaaaagt tgtacctttt gttgaacttg caatcggtct
     1741 tgctatggtg gtaggtctat tcacttggct tgtaagtatc ggaagtgccg gattcctagt
     1801 aatgtttaca ctaagcgcta tgcttggttg ggacaaattc tgggcgttac cagcttctat
     1861 cgcacttcta aatggcgctg gacgcacatt tggtcttgat tattgggctg ttccttggtt
     1921 ccaaaaacat cttggtcatt ggtggtacgg taagccaaga tccgtttaca gagacaagta
     1981 atttagttag ttaaaatttt aaataaaaac tcgggagtgc atccaaaagc cagttttggc
     2041 ataggaggtg cttccgtttt tattatttgt tgatttcttg aactttttcc tattatattt
     2101 aggcattatc ctttaaaata ggatttgtac atgacatttt gaaaggaggc aatacggtga
     2161 agaagtatct ttctatggtg aagcgttggg atattattat tattttatct ctttg
//
LOCUS       DASDXX010000270         2208 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.272, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000270 DASDXX010000000
VERSION     DASDXX010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.272"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..148
                     /locus_tag="U0280_002782"
     CDS             <1..148
                     /locus_tag="U0280_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272702.1"
                     /translation="VLVNDGYKTLQVLPYMILYPCIVLCIIMIAFNLIADGLRDAFDP
                     KMRD"
     gene            166..1242
                     /locus_tag="U0280_002783"
     CDS             166..1242
                     /locus_tag="U0280_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272703.1"
                     /translation="MEKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESG
                     SGKSVTTKSIMRLLPEGNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMT
                     SLNPTMTIGKQISEPLIKHQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGM
                     RQRVVIAISLACNPQILIADEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGV
                     VANVADRVAVMYGGKIVEIGTVDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTP
                     PDLLHPPKGDAFAARNKYAMQIDLEEEPPLFKVSDTHYAATWLLHPDAPEVTPPDAVL
                     RRQEQFAELHPGMQAVHAKGVEVE"
     gene            1239..2207
                     /locus_tag="U0280_002784"
     CDS             1239..2207
                     /locus_tag="U0280_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2272704.1"
                     /translation="MTEQREKLLEIHNLKQYFNKGTASEVRAVDDISFDIYKGETLGL
                     VGESGCGKSTTGRTIIRLYDATGGEVIYNGKNVHARKSRKEMLEFRRKMQMIFQDPYA
                     SLNPRMKVKDIIAEGIRIHGLAKTPEETNKQVYDLLETVGLSKEHAGRYPHEFSGGQR
                     QRIGIARALAVQPEFIIADEPISALDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMV
                     KYISDRIGVMYFGKLVELAPANDLYHAPLHPYTESLLSAIPLPDPNYERTRVRKTYDP
                     TSHNYKDGDEIKMREIAPGHFVYCSEEEEVMYKEKHAKLTAEAAAK"
BASE COUNT          735 a          392 c          437 g          644 t
ORIGIN      
        1 tgtcttggta aatgatggat ataaaacatt acaagtatta ccgtatatga ttctgtatcc
       61 atgtattgta ctttgtatca ttatgattgc atttaactta attgcagatg gcttgcgtga
      121 tgccttcgat cctaaaatgc gcgattaaaa gagaggtgag gaaaaatgga aaagctatta
      181 gaagttaaag atttaaatat ttcattccac acatatgccg gtgaagtaaa ggcgattcgt
      241 ggagttaatt ttgacttata taaaggggaa accttagcga ttgttggcga atctggttct
      301 ggtaaatcag taacgacaaa atcgattatg cgtttacttc cagaaggtaa ctcagaaatt
      361 aaaagtggcc aaattttatt taacggaatg gatatcgcta aagctcacga aaaacaaatg
      421 caaaaaattc gtgggaaaga tatagctatg attttccaag atccaatgac atcattaaat
      481 cctacgatga caattggtaa acaaatttct gaaccactta ttaagcacca aaaaatcagt
      541 aaacatgaag cacataaaac agcacttcgt ttacttcaat tagttggtat tgccaacgca
      601 gaagaaagaa ttaaacaata tcctcaccaa ttttcaggtg ggatgcgtca acgggttgtt
      661 attgcgattt cacttgcatg taacccacaa attcttattg cagatgagcc aacaacagcg
      721 ctagatgtaa ctatccaagc gcaaatttta gatttaatga aggacttaca gaaaaaaatt
      781 gatacgtcga ttatctttat tacccatgac cttggtgttg tagcaaatgt tgcagaccgt
      841 gtagctgtta tgtacggtgg taaaattgtt gaaatcggaa cagttgatga aattttctat
      901 aatccacaac atccttatac atggggacta attagctcta tgcctacttt ggatacagat
      961 gatgaagaat tatttgttat tcctggtacg ccacctgatt tacttcatcc tccaaaaggg
     1021 gacgcatttg ctgcgcgtaa taaatacgca atgcaaattg accttgaaga agagccacca
     1081 ctatttaagg tgtctgatac acattatgcg gctacatggt tgcttcatcc tgatgcgcca
     1141 gaagtaacgc cacctgatgc tgtattacgt cgccaagagc agtttgcgga acttcatcct
     1201 ggcatgcaag ctgtccatgc gaaaggggta gaagtagaat gactgaacaa agagaaaaat
     1261 tattagagat tcataatcta aaacaatact tcaacaaagg tactgcaagt gaagtacgcg
     1321 cggttgatga tatttctttt gatatttata aaggtgaaac acttggttta gtaggagaat
     1381 ctggttgtgg taaatctaca actggacgta ctatcattcg tttatacgat gctactggcg
     1441 gagaagttat ctataatggt aaaaatgtgc atgcacgtaa aagccgtaaa gaaatgcttg
     1501 aattccgtcg taaaatgcaa atgattttcc aagatccata cgcatcttta aatccgcgta
     1561 tgaaagttaa agatatcatt gctgaaggta ttcgtattca tggccttgct aaaacacctg
     1621 aagaaacgaa taaacaagta tacgatttgt tagaaacagt tggattaagt aaagaacatg
     1681 ctggccgtta tccacatgag ttttccggcg gtcaacgtca acgtattggt atcgctcgtg
     1741 cgcttgctgt tcaaccagaa ttcattattg ccgatgagcc tatttccgca ctagatgtat
     1801 ctatccaagc gcaagtagta aacttattac gtcaattgca gaaagaaaaa aatctaactt
     1861 acctattcat tgcccacgat ttatcaatgg ttaaatacat tagtgatcgt attggcgtaa
     1921 tgtacttcgg taaattagta gagttagcgc cagcaaatga tttgtatcat gcgccgctac
     1981 acccttatac agaatcactt ttatccgcga ttccgttgcc agatccaaat tatgaacgta
     2041 ctcgtgtgcg taaaacatat gacccaacgt ctcataacta taaagatggc gatgaaatta
     2101 aaatgcgcga aattgctcct ggacattttg tttattgttc agaagaagaa gaagttatgt
     2161 ataaagaaaa gcatgctaag ctaactgctg aagctgctgc gaaataat
//
LOCUS       DASDXX010000271         2202 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.273, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000271 DASDXX010000000
VERSION     DASDXX010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.273"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(57..2201)
                     /locus_tag="U0280_002785"
     CDS             complement(57..2201)
                     /locus_tag="U0280_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEM2272705.1"
                     /translation="MDKFKQQLIKYLKLFFGFIGKWLSKGWQKFRRFWKNKHIGKIFL
                     LAGLVFLLSFIIYLVIVAKSADIDALKKGLESATIIYDKDGDKAGELSSTDATFVSID
                     KISKNLQNAVVSIEDRKFYEHKGFDLKGIARAGVNLVTSGGISGGGSTITQQLAKNAL
                     LTQEQTFTRKAKEIFMAREIEKTYSKDEIMEMYLNRSYFGNGEWGVENASLKYFGKSA
                     ADLNIPEAATIAGLLQAPSAYDPYQHIDKATNRRNMVLNAMVETGTISKAEGDKYKAT
                     KIVLNDQSKDPLANKYPWYVDAVINEAVNEADITQDEIMQKGYKIYTELDQNYQTSLE
                     NVYNNDGLFPSNANDGTLVQSGAVLMDPATGGIRALVGGRGEHVFRGFNRATQMKAQP
                     GSTMKPLAVYTPALQSGYDVDSMLKDEKITYKGNYTPTNVGGVYSGEVPMYKAVANSI
                     NAPAVWLLDQIGIDKGVKSVEKFGITVPEKDRTLGLALGGMSKGASPVEMATAYATFA
                     NNGAKPESHIITKIVDPSGNTVYENVPKTKQIISETVSNEMTSMLLDVINTGTGQSAA
                     VSGHEMAGKTGSTQVPFDDTSGTKDQWFVGYTPNLVGAVWMGYDKTDKEHYLTTTSSA
                     GVSSLAHYVMNSGLQYQKSADFSTKSAAQETAAKKEEEEKEKNSGSDFWSGVKEKADE
                     AGETIKKGADKVKEFGGKVSDGIGNLIDSIGN"
BASE COUNT          578 a          460 c          384 g          780 t
ORIGIN      
        1 tgcaatacaa aaaagcacat tttactagag ttaacatagt aaaatgtgct ttgaatttaa
       61 ttacctatcg agtcgattaa gtttccaatg ccatcagaaa cttttccacc gaattctttt
      121 actttatctg cgcctttttt gattgtttct ccagcttcat cggctttttc tttcacgcca
      181 ctccaaaagt cgctaccact gttcttctct ttttcttctt cttctttttt cgctgcagtt
      241 tcttgtgcag cactcttcgt actaaagtct gcggatttct gatactgcaa accactattc
      301 attacgtagt gagccaaact agaaacacca gcagaactgg ttgtagttag gtaatgctct
      361 ttgtcagttt tatcatatcc catccaaacg gctccgacta ggtttggcgt gtagccaaca
      421 aaccattgat ctttagtacc gcttgtatca tcaaatggaa cttgcgtgga acctgttttc
      481 ccagccattt cgtgaccgga aacagctgca ctttgaccag ttcctgtatt gataacatct
      541 aaaagcatgg aagtcatttc attagatact gtttctgaaa tgatttgttt agttttagga
      601 acattttcgt aaactgtatt gcctgatgga tcgacaattt tagtaataat atgagattcc
      661 ggtttggcac cattgttagc aaaggttgca tacgctgttg ccatttctac tggcgaagca
      721 cctttactca taccaccgag tgcaagtcca agcgttctat ctttttctgg aactgtaata
      781 ccaaattttt cgacagattt tacaccttta tcaataccaa tttgatcaag taaccaaacg
      841 gcaggggcat taatcgagtt ggctacagct ttatacattg gaacttctcc actataaacg
      901 ccgccaacat tggttggtgt gtagttacct ttgtaggtta ttttttcatc ttttagcatt
      961 gaatccacgt cataaccaga ttgaagcgcc ggtgtgtata ccgcaagtgg cttcattgtg
     1021 gaacctggtt gtgctttcat ctgtgtcgcc cggttgaaac cacggaagac atgttctccg
     1081 cgtccaccaa caagcgctct aatgcctcca gtagctggat ccattaaaac agctcctgat
     1141 tgaactagtg tgccatcatt tgcattagaa gggaataacc catcattgtt gtaaacattt
     1201 tctaaggaag tttgataatt ttgatctaat tccgtataga ttttatatcc tttttgcatg
     1261 atttcatctt gcgttatatc tgcttcattt acagcctcat taataactgc atcgacgtac
     1321 catggatatt tattcgcaag tggatctttt gattgatcat ttaaaactat ttttgtagct
     1381 ttgtatttat cgccttctgc ttttgaaatt gtgcctgttt cgaccattgc atttaatacc
     1441 atgttgcggc gattagtcgc tttgtcgata tgttggtatg gatcatacgc acttggagct
     1501 tgaagcaatc cagcaattgt cgcagcttct ggtatgttta agtctgccgc tgatttacca
     1561 aaatatttta aggaagcatt ttctactccc cattccccat taccaaagta agaacggttt
     1621 aagtacattt ccataatttc gtcttttgag taggtttttt cgatttcacg agccataaat
     1681 atttctttgg cttttcgtgt gaaggtttgt tcttgtgtca gtagagcatt tttggcgagt
     1741 tgctgtgtaa tcgtactacc gccaccagaa atgcctccgc tagtgactaa attaacaccc
     1801 gcccgagcta tccctttcaa gtcaaaacct ttatgttcat aaaattttct atcttcaatg
     1861 gaaactactg cattttgtaa gtttttagat attttatcga tggatacaaa tgttgcatca
     1921 gtggaagaaa gctcccctgc cttgtcgcca tctttgtcat aaataatcgt ggctgactct
     1981 aagccttttt ttagtgcatc tatgtcggca gattttgcta ctattacaag ataaatgata
     2041 aaacttaata aaaatacaag tccagctagt aaaaaaatct ttccgatatg tttgtttttc
     2101 cagaaacgtc taaatttctg ccatcctttg ctaagccatt ttcctataaa accaaagaat
     2161 aattttaagt atttaattag ttgctgtttg aatttgtcca tg
//
LOCUS       DASDXX010000272         2184 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.274, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000272 DASDXX010000000
VERSION     DASDXX010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.274"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            290..1039
                     /gene="rpsB"
                     /locus_tag="U0280_002786"
     CDS             290..1039
                     /gene="rpsB"
                     /locus_tag="U0280_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEM2272706.1"
                     /translation="MPVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQ
                     KTVKKVDEAFNFMREVASDNGTILFVGTKKQAQESVRDEAIRSGQYFVNHRWLGGTLT
                     NFETIQKRIQHLKKIERMEADGTFEVLPKKEVVLLKKEQEKLERFLGGIKDMKGLPDA
                     LFIVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMA
                     DAIIEVNQGEELTEAEVAPVEEKATEETTEA"
     gene            1119..2003
                     /locus_tag="U0280_002787"
     CDS             1119..2003
                     /locus_tag="U0280_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEM2272707.1"
                     /translation="MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREK
                     GIAKAAKKSDRVASEGMTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILA
                     VRPDSLEDALKTEMPNGQTVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMN
                     GRIGVLTLLEGTTDTTVAKDVAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEG
                     KPANIVEKMVEGRLKKYLSEISLEDQPFVKNPDITVGDYVKQSGGKVVSFVRFEVGEG
                     IEKKEDNFVEEVMSQVKK"
BASE COUNT          788 a          373 c          426 g          597 t
ORIGIN      
        1 cttatgaaat tgcgcaattt aaaagaataa aaaaacatgg tgttcttagt ttagccgaaa
       61 agcttgaaat gattgttgaa aaaaattagt tatcgaagaa agaagatatg taccacgggt
      121 tgcatatttc ctgtttttat ggtatattag gaaacggtgt taaatcacac acgcacggtg
      181 acagactgag aaggtgctta acgacttgtt cgcttaagtt tttcagctgg ttgatccatg
      241 cggagggcgg ttatccgcaa aaaataaacc aataggaggg aataacacaa tgcctgttat
      301 ttcaatgaaa caattactcg aagcaggagt tcacttcggc caccaaacgc gccgttggaa
      361 cccaaaaatg aagaaatata tcttcacaga aagaaatggt atttatatca ttgacctaca
      421 aaaaacagtg aaaaaagtag acgaagcttt caacttcatg cgtgaagtag ctagcgacaa
      481 cggaactatc ctgtttgtag gaactaaaaa acaagctcaa gaatccgttc gcgacgaagc
      541 tatccgttct ggacaatatt tcgtgaatca tcgttggtta ggtggtactt taactaactt
      601 tgaaactatt caaaaacgta ttcaacacct taaaaaaatc gaaagaatgg aagcagatgg
      661 aacttttgaa gtccttccta aaaaagaagt tgtccttctt aaaaaagaac aagaaaaatt
      721 agaacgcttc ttaggcggaa tcaaagacat gaaaggtctt cctgatgcat tattcatcgt
      781 tgacccacgc aaagaacgta ttgcggttgc agaagctcgt aaacttcata ttcctatcat
      841 cggtattgtt gatacaaact gtgatccgga tgaaatcgac tacgtaatcc ctgcaaatga
      901 tgacgctatc cgcgcggtta aacttttaac tgctaaaatg gctgacgcta tcattgaagt
      961 gaaccaaggg gaagagttaa cggaagcgga agttgctcct gtagaagaaa aagctacaga
     1021 agaaactact gaagcataag attttatttg aaactttcaa ggtgataagg cactattctt
     1081 atcacctttt ttaaagagaa aaattggagg gaaaataaat ggctaatatt acagctcaaa
     1141 tggtaaaaga attacgcgaa aaaactggtg ctggtatgat ggattgtaaa aaagcacttg
     1201 tagaaacaga aggagatatg gaaaaagcaa ttgactatct tcgtgaaaaa ggaatcgcta
     1261 aagctgcgaa aaaatctgat cgtgttgctt ctgaaggtat gactcatgta atcagcaatg
     1321 aaaaacatgc cgtagtactt gaagtaaatg ctgaaacaga tttcgttgct aaaaacgata
     1381 acttccaaca attagttgac gctttagcta aacaaattct tgcagttcgt ccagatagct
     1441 tagaagatgc gcttaaaaca gaaatgccta atggtcaaac tgttcaagac tacatcactg
     1501 aagcaattac aaaaatcggt gaaaacattt cccttcgtcg ttttgaagta aaagaaaaag
     1561 cagacaactc tgctttcggt gaatacatcc acatgaacgg acgtattggt gttcttacac
     1621 ttcttgaagg aactactgat actactgttg caaaagacgt tgcaatgcac atcgctgcaa
     1681 tcaaccctaa atacatttct cgtgaagacg tttctactga agaagtggaa cacgaaaaag
     1741 aagtattaac tcaacaagcg ttaaacgaag gcaaaccagc taatatcgtt gaaaaaatgg
     1801 tagaaggccg tttgaaaaaa tatctaagcg aaatttcctt agaagaccaa cctttcgtta
     1861 aaaacccaga catcactgta ggtgactacg tgaaacaaag cggtggtaaa gttgtatcat
     1921 tcgtacgttt cgaagtaggc gaaggaatcg agaaaaaaga agataacttt gttgaagaag
     1981 taatgagcca agtgaaaaaa taaatccact ttaaatcgat tttatatgat atcaaaaccc
     2041 cgtattttct taggaaatac ggggttttta tttttttgat ttcatttgaa tatcatacaa
     2101 tatcaaatga ttgtgggatt tttttaattt tattttatcc cacaattttc tagatttctt
     2161 acaatctgtc tttcatcgta ctca
//
LOCUS       DASDXX010000273         2170 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.275, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000273 DASDXX010000000
VERSION     DASDXX010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.275"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            245..799
                     /locus_tag="U0280_002788"
     CDS             245..799
                     /locus_tag="U0280_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate metabolism regulator"
                     /protein_id="HEM2272708.1"
                     /translation="MAITMYIDQPGASLNYETTHPHFKEHFKASFYLDGQDSYGPFGY
                     KDGLEVLRRLEEYFSDKSDQGLNLSSFPKYMMETVKKANYVPAKDDGVERLKQLLAEF
                     GSDVRASDRITVSAALAQIKITGYILPALRDAALESLHREIELNKIENIDAGYADSMF
                     YDLLTFTKDYTSVLPDMWCRHCTE"
     gene            complement(830..1303)
                     /locus_tag="U0280_002789"
     CDS             complement(830..1303)
                     /locus_tag="U0280_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009926778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM2272709.1"
                     /translation="MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGE
                     KEFRRLEHEKLKELATTKAVIATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRLK
                     GDTTRPLVQQKTAEEIRAIFEPRIAHYQDSADFIVNTDNRNQEEVARAILTMLDK"
     gene            1527..2036
                     /locus_tag="U0280_002790"
     CDS             1527..2036
                     /locus_tag="U0280_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272710.1"
                     /translation="MIENELEHAKKMEKIEFGVNRRLIFSSCLLWMAVGLLLYVVFSH
                     IKGVNGIEEMILLVFIGLCVLRPLFRLINIAPTVELTERGVAYRGDFKSWNEIKKTEL
                     KKPAMMLFSQGRLKIMTSINGREEVAWDIVAADVSISLEELEKLIQSMRSTYTNDETI
                     GMEIFVEKK"
BASE COUNT          731 a          326 c          406 g          707 t
ORIGIN      
        1 aaccaagtcc agttttattt aaccacgaaa taaataaatg gtcaaaagag caaaaattaa
       61 cttttatgag aatagaacca atttaattaa ctaattttat cttatatagt taattaaaac
      121 acaataaaag cgaaaatcat ccttaaaatt gtcatgaaat tgtcaccttt ttttcttctt
      181 tcaaaaaggt agatagtctg gtaagatgaa tgtatgagat ttcacatgaa tggaggaaat
      241 gagaatggca attactatgt atatcgacca gcctggtgcc tcgttaaatt atgagacaac
      301 acatccacat ttcaaggaac attttaaagc gagtttttat ttggatggtc aggatagcta
      361 tggtccattt gggtataaag atggacttga agtacttcga cgtttagaag aatattttag
      421 tgataaaagt gatcaaggac tcaatttatc gtcttttcca aaatacatga tggaaacagt
      481 gaaaaaagca aactatgttc cagcgaaaga cgatggtgta gaacgattga aacaactttt
      541 ggctgagttt ggcagtgacg tacgtgcatc tgatagaatt actgtctcag cagctttagc
      601 tcaaatcaaa atcacgggct atattttacc tgctcttcgt gatgcggcgc tggaatcact
      661 tcatcgcgaa atagaattga acaaaataga aaatattgat gcaggttatg cggacagtat
      721 gttttatgac ttattaacct ttacaaaaga ctatacatct gtgttaccag atatgtggtg
      781 cagacattgt acagaataaa aaaacaacgc taaaattagc gttgtttttt tacttatcta
      841 acatggttaa aatagctcga gcaacttctt cttgattacg attatccgta ttaacgataa
      901 agtctgcaga atcttgatag tgagcaattc taggttcaaa aatagcgcga atttcttcgg
      961 ctgttttttg ttgtacaagc ggacgtgtag tgtcgccttt taagcgattc ataaatactt
     1021 cgggatccgt ttctaaataa ataaccggat atgtattttt taaaacttct ctattttcag
     1081 gattgagaac aatgccaccg cctgttgcta taacggcttt ggttgttgct aattctttta
     1141 atttttcatg ttctagacgg cggaattctt tttcaccata tttagcaaaa atgtccgata
     1201 cactcattcc ttgttcgctt gtaattactt cgtcaatatc gatgtacggt aagtcagcta
     1261 agtttgcgag tatatttcca accgttgttt ttccagctcc catgaagcct attaagataa
     1321 cttgatcgat gatgttctcc tcctttattg gattattaca ttttactact taaaagcatt
     1381 aaagaaatta tatcacaaat gccaaaaagg tcaactgaaa gtaggctgat ttctttaaaa
     1441 taaaaagcta catgaatgcc ttcttcccat tgtagtatat ttttagtaca atagaaataa
     1501 tagagctgta aaactggagg aaaataatga tagaaaatga gctagaacat gcaaagaaaa
     1561 tggagaaaat cgaatttggg gtcaatcgac gtttgatttt ttcaagttgt ttactttgga
     1621 tggctgttgg attattactt tatgttgttt ttagtcatat caaaggtgta aatggcatag
     1681 aggaaatgat tttactcgta tttatcggcc tttgtgtgtt acgtccattg tttcggttaa
     1741 ttaatatcgc tcccaccgta gaattaacag aacgtggagt tgcttatcgt ggtgatttta
     1801 aatcatggaa tgaaattaaa aaaacagaac tgaaaaaacc agcaatgatg cttttttcgc
     1861 aaggtagatt aaaaattatg acatcgataa atgggcggga agaagtggca tgggacatag
     1921 ttgctgcgga tgtttctatt agtttggagg aactagaaaa actcattcag tcgatgcgtt
     1981 ccacttatac aaatgatgaa actatcggta tggaaatctt tgtggaaaag aaataataag
     2041 gaaaatcatt tatctgtttt tttgacggat aaatgatttt ttaataaata caactatagc
     2101 ccatagtatc ttgtttaaaa ttaaggtaaa ataaccaaat aaagaacgta acgggaggaa
     2161 tacaatggaa
//
LOCUS       DASDXX010000274         2159 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.276, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000274 DASDXX010000000
VERSION     DASDXX010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.276"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(103..957)
                     /gene="fba"
                     /locus_tag="U0280_002791"
     CDS             complement(103..957)
                     /gene="fba"
                     /locus_tag="U0280_002791"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-1,6-bisphosphate aldolase"
                     /protein_id="HEM2272711.1"
                     /translation="MPIVNMTDMLKKALAGKYAVGQFNINNLEWTQAILKAAEAEKAP
                     VILGVSEGAAKYMGGFKTVVKMTEGLVEDLKITVPVAIHLDHGSSFDSCKAAIDAGFS
                     SVMIDGSHHPIDENIAMTKQVVDYAHAKGVSVEAEIGTVGGDEDGVTGGINYADPQEC
                     LRVVKEANIDALAAALGSVHGPYHGEPVLGFDEMKEISELTGAPLVLHGGSGIPEHQI
                     KKAIELGHSKINVNTECQIVWTAAVREKLATDDKVYDPRKVIGPGVDAIIKTVTEKIQ
                     EFGSNGKA"
     gene            complement(1125..2045)
                     /locus_tag="U0280_002792"
     CDS             complement(1125..2045)
                     /locus_tag="U0280_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM2272712.1"
                     /translation="MQKKAMIIYNPAAGKNKFRKLLPDAEKILTEADFEVTLVPSTPA
                     PKSTTFIAKQAAEAGFDVVIAAGGDGTVNEVVNGLMQVDTPPKLGVLPVGTTNDYARA
                     LNFAKNPLEALRIIAKQETIRVDIGKANETEFFINNAAGGKITEITYAVKESMKSKWG
                     RLAYLFSGLTVLPKLSPVYVEIAYNDKIFKGEILLFFVNKSNSVGGMETLCPPAELNS
                     GMFELLILKKVSPKTLFQLFASIKKGTHLSSPHVIHARTNKVTINSEADLNVSYDGVY
                     GGKAPYTLEVIPEALEVFADTNRISSRLRG"
BASE COUNT          618 a          451 c          362 g          728 t
ORIGIN      
        1 aattaaattc cctctatact aaccctcgca atacataaaa aataactggt aaaatcaaca
       61 agtgatccta ccagttattt ttatatcatc ataaagttcg tcttacgctt taccgttaga
      121 accaaactct tgaatttttt ctgttacagt tttgataatc gcgtccacac cagggccgat
      181 tactttacgt ggatcataaa ctttgtcatc agtagctaat ttttcgcgaa cagctgcagt
      241 ccaaacgatt tggcattcag tgttaacgtt gattttactg tgacctagtt caattgcttt
      301 tttgatttgg tgttcaggaa ttccagaacc accgtgaagt acaagtggag cacctgtaag
      361 ttcggagatt tctttcattt cgtcaaaacc aagaacaggt tcgccgtggt aaggaccgtg
      421 aacagaacct aatgctgcag ctagtgcatc aatgttagct tctttaacta cacgtaaaca
      481 ttcttgtgga tcagcatagt tgattccgcc agtaactccg tcttcgtctc caccaacagt
      541 tccaatttca gcttcaacag atacgccttt agcatgcgca tagtcaacaa cttgtttagt
      601 cattgcaatg ttttcgtcga ttgggtggtg agagccgtcg atcattacag aagagaatcc
      661 tgcatcgata gccgctttac aagaatcaaa gcttgaacca tgatcaagat gaatcgcaac
      721 aggtacagtg attttcaggt cttctacaag tccttcagtc atttttacaa ctgttttgaa
      781 tcctcccatg tatttagcag ctccttcaga aactcctaaa ataactggtg ctttttctgc
      841 ttctgcagct ttcaaaatag cttgagtcca ttcaaggttg ttgatgttga attgaccaac
      901 agcatatttt ccagctaatg cttttttcag catgtctgtc atgttaacga taggcataat
      961 acaatttcct ccctcaggaa tttaggaaaa ccattttgat tttccctaag atttgaattt
     1021 ccgccgtgaa aaatagtggc agctattttc ccctaacaaa catatgataa cagatttgtg
     1081 atgaatttac cataaaaact agaaaatttt ctagtgtaaa cgctttagcc tctaagacgg
     1141 gaagaaatcc gatttgtatc agcaaatact tctaatgctt ctgggattac ctctaatgta
     1201 tacggtgctt ttcctccata tacaccatca tagctaacat ttaaatctgc ttcgctgttt
     1261 atagtaactt tatttgttcg cgcatggatt acatgcggac tacttaagtg tgtacccttt
     1321 tttatagaag caaataattg aaataatgtt ttaggagaga ctttctttaa aattaataac
     1381 tcaaacattc cactatttaa ttcagcagga ggacacaatg tctccatacc accgaccgag
     1441 ttggacttat ttacaaaaaa cagcaaaatc tcacctttaa atattttatc gttatatgca
     1501 atttcgacgt acactggtga tagttttgga agaacagtta aaccgctaaa cagataagca
     1561 agtctgcccc atttggattt cattgattct tttacagcat aagttatttc ggttattttc
     1621 ccaccagctg cgttattaat gaaaaattcg gtctcattgg ctttaccgat atcgacacga
     1681 attgtttctt gcttggctat aattcgaagt gcttcgagtg gatttttagc aaaatttaac
     1741 gctctcgcat aatcattcgt cgttccaacc ggtaacactc ctagtttcgg tggggtatca
     1801 acttgcatca acccattaac aacttcattt actgtaccat ctccacctgc tgcaattaca
     1861 acatcaaaac cggcttctgc agcttgtttg gcaataaatg tagtactttt aggtgctgga
     1921 gttgatggga ctaaagttac ttcaaaatct gcttctgtta aaattttttc tgcatccgga
     1981 agtaattttc taaacttatt tttacccgct gccggattgt atattatcat cgctttcttt
     2041 tgcaaattgc cgctccctct ttcctatata tataatttag tttcctattt tggccttagg
     2101 atgtcaactt gtttgactga aagaaaacgc tagttaaatt gaagggcttt ttacctatt
//
LOCUS       DASDXX010000275         2150 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.277, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000275 DASDXX010000000
VERSION     DASDXX010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.277"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..365)
                     /locus_tag="U0280_002793"
     CDS             complement(<1..365)
                     /locus_tag="U0280_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272713.1"
                     /translation="MKQVMEVIKEQIKNLPMIFRIARYEDKATYQSHYLGLAWQILNP
                     LIQIAIYYFVFGFGMNAKSGSDASYIEWMLAGIIPWFFISAVILQGANSIYNKIGMVS
                     KMNFPMSILPNITIVSNLT"
     gene            complement(647..1540)
                     /locus_tag="U0280_002794"
     CDS             complement(647..1540)
                     /locus_tag="U0280_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2272714.1"
                     /translation="MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETI
                     TLKKAPTKIVSLIPSNTEILFALGLGDEVKGVSAYDDYPKEAQKIEKVTSTSVDTEKI
                     IALKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTE
                     KEATKVTDSMEKQKVAIEKKAKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTN
                     IVTESGFIPYNEEKVVELQPDIILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANK
                     LSRPGPRLLEGAADIQAVLEN"
     gene            complement(1694..>2150)
                     /locus_tag="U0280_002795"
     CDS             complement(1694..>2150)
                     /locus_tag="U0280_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HEM2272715.1"
                     /translation="VTVLDTPTFYKGMRLGETIEVELEKGKILLIKLNSIGEPIADGT
                     RVIYFELNGQPREINIQDMNVQSTVIARRKIDTTNPEHVGATMTGSVIQVVVKKGDSV
                     KKGDPLLITEAMKMETTIQAPFDGEVSSIYVSDGDTIESGDLLIEVNRI"
BASE COUNT          602 a          423 c          315 g          810 t
ORIGIN      
        1 cttgttaaat tagagacaat cgtgatatta ggtaaaatac tcattgggaa attcattttt
       61 gaaaccatgc ctattttatt ataaatacta ttcgcacctt gcaaaataac tgcactaata
      121 aagaaccaag gaataatccc cgctagcatc cattcaatat aacttgcatc cgatccagat
      181 tttgcattca tcccaaatcc aaacacaaaa taataaatag caatttgtat taatggattt
      241 aaaatctgcc atgctagtcc taaataatgg ctttggtatg tagccttatc ttcatagcgc
      301 gcaatgcgaa atatcattgg taaatttttt atttgttctt taataacttc cataacctgt
      361 ttcacaaaaa cacttcttcc cgaaaaataa tatggtttta ataaccagat tcagctcact
      421 attcttttat aggcaactcc tccacttaaa accacagaca ccttgtttgt attatttgtc
      481 gtctcggttg ccatattctt gctgtttatg catgatcttc taagtgtata tagctctgct
      541 tatttggcaa attattttac taatacggtt tagtaaaaaa tccaccctat gttaaattac
      601 cttaaaagtc attttttgta aagcttcatc tgcaattatc aaagaattag ttttcaagaa
      661 cagcctgaat atctgctgcc ccttcaagca atcttggtcc tggacgactt aatttattgg
      721 catccatttc atagatttta tcgtttttaa ccgctggaat atctttccat gctgcacgtt
      781 tttggatagt tgctttggca tctggataga cagataaaat gatatccggt tgcagttcta
      841 ctactttttc ttcgttgtaa ggaatgaacc ctgattctgt tacaatatta gttccaccag
      901 caagttctaa catttcattc ataaatgttc cttttcctgc tgtgtataag tctggactaa
      961 tttcaatcca tacttttggg gatgttttta attctttcgc tttcttttca atagctactt
     1021 tttgtttctc cattgaatcg gtcacttttg tagcttcttt ttctgttcct gttagatcac
     1081 caatggtagc aatcgatttt tctacttcct ttaagtttgt tgcgtctgga actacaaaca
     1141 cgttaattcc cgcatctgta agtattttat aagcgtcttt ttctgttgca agcatcgatt
     1201 cgtgtccaag aactaaatca ggcttaagag caataatttt ttctgtatca actgaagtag
     1261 aagtcacttt ctctattttc tgagcttctt ttggataatc atcatatgcc gatactcctt
     1321 ttacttcatc accaagtcct agtgcaaata aaatttctgt attacttgga attaatgaaa
     1381 caattttagt tggagctttt ttcagtgtaa ttgtttcacc agttgcatct ttcactttga
     1441 tttcttctgt ttgctttgtt gtctctttta cttccgtatt cccgcatgca gttaaaatag
     1501 caagcaataa aactacggca attcctttaa accatttcat atgtatgttc tccttttttc
     1561 agaaaaaaca ggcgggaaat ctaacactaa taaatctgga aaaacgtctt tattctcacg
     1621 tttaacttat cgatttttaa agttcttcac tttaaattag cgtcatattc ccacccgtta
     1681 gtcatttatg tttttaaatt ctgtttactt caattaaaag atcaccagat tcgatagtat
     1741 cgccgtcaga aacataaatg ctgctaactt ctccatcgaa aggcgcttga atcgttgttt
     1801 ccattttcat tgcttctgtg attagtagtg gatcaccttt tttcacagag tcgccttttt
     1861 taacaactac ttgaatgact gaacctgtca ttgtagctcc aacatgttca gggttagttg
     1921 tatcaatctt acggcgtgca ataacagtgg attgaacgtt catatcttgg atgttaatct
     1981 cacgtggttg tccatttaat tcaaaataga taacacgtgt gccatccgca attggttcac
     2041 caatagaatt tagcttgatt aaaaggattt ttcctttttc aagttctact tcgattgttt
     2101 cccctaaacg cattccttta tagaatgttg gtgtatcaag gactgttaca
//
LOCUS       DASDXX010000276         2109 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.278, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000276 DASDXX010000000
VERSION     DASDXX010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.278"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..570
                     /locus_tag="U0280_002796"
     CDS             <1..570
                     /locus_tag="U0280_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2272716.1"
                     /translation="YQIILFRKIGFSIQEIKESLLGEKVTPMLEQAEQDLQQKIEELV
                     GIQKTIQKIIHSQKEMRLNEITFVAKDNRYFKKVPNQIIDHNTINYSQAAKHNLPDLE
                     EPFYIFSKQDTGAICLKTIKKRSDYTFPAGEYACKSFIAKDEATVEAQIQLFLEELKH
                     PTTSIILYENIYPSLAYPDAMVYTMEVPL"
     gene            567..1160
                     /locus_tag="U0280_002797"
     CDS             567..1160
                     /locus_tag="U0280_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272717.1"
                     /translation="MTLSIESIDSFEKDCIIEEIASLVFAGFKSKFTKMLYKETEAHD
                     IIYAFCHYIYTEKGENLLIAIQDELVCGCMFVTGKSDSHQKLYQNLRKFLPFSQCLKL
                     IFLLSLLSHKPVQNERYIDFITVSPNFRGQGIGKTLISHCLETFHDEKITLYVAKNNN
                     RAYKLYRNLGFQVIQKENSTLMGVLTGIKEWQKMEWI"
     gene            1136..>2109
                     /locus_tag="U0280_002798"
     CDS             1136..>2109
                     /locus_tag="U0280_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2272718.1"
                     /translation="MAKNGVDIMKRWKKITIVLSAIIVILVAILFIGNNFEMNETRVT
                     IPTTGGRLSAVVTTPKHEKPKGIIVFVHGDGAQEATQNGSYRPLMERFAKQGYISVSW
                     DKLGVGNSSGNWLNQSMEDRANEVNQVIEWMKVKYPDSTTKIGLWGASQAGWVIPKAM
                     NANNEIAFSILAAPAINWMRQGEYNTGWQAKDAGKTTKEVKQAQQNFLTDSALISKNK
                     TYESYKQNGGKEKMTPDRYNFIRKNMNQDATLDLSKVKAKIYLVLAEKDKNVDSAETK
                     DVYTQQIKKENLETKTVPNVSHQMINPAIANSELLIHIVGLMVPKYFLV"
BASE COUNT          787 a          420 c          360 g          542 t
ORIGIN      
        1 tatcaaatta ttctttttag aaaaattggc ttttctattc aagaaatcaa agaaagtttg
       61 cttggtgaaa aagtgactcc catgttagag caggctgaac aagatttgca acaaaaaata
      121 gaagagttag taggaattca gaaaacgatt caaaaaatca tccattcgca aaaagaaatg
      181 cgtttaaatg aaatcacttt tgtagctaaa gacaatcgtt attttaaaaa agttcctaac
      241 caaataattg atcataacac tatcaactac tcccaagctg caaaacacaa tttaccagat
      301 ttagaggaac ctttttacat tttctccaaa caagacactg gagcaatctg ccttaaaacc
      361 attaaaaaaa gaagtgatta tacttttcca gctggcgaat atgcttgtaa atcttttatt
      421 gccaaagatg aagcaactgt tgaagcgcaa atccaactat ttttagaaga attaaaacat
      481 ccaacaacaa gcataatttt atacgaaaac atctaccctt cactcgccta tccggacgca
      541 atggtttaca caatggaagt gccattatga cactttccat tgaaagcatc gattcatttg
      601 aaaaagattg catcattgaa gaaatagcgt ctttagtttt cgcagggttc aaatcaaagt
      661 tcacaaaaat gctatacaaa gaaacagaag cacatgacat tatatatgct ttttgccatt
      721 acatttatac agaaaaaggc gaaaacctac taattgcaat acaagatgag ctagtttgcg
      781 gttgcatgtt tgtaacgggc aagagtgact cacatcaaaa gctatatcaa aacctaagaa
      841 aatttttacc attttcacag tgcctcaaat taattttctt actcagtctt ctatcacaca
      901 aacctgttca aaatgaacga tatattgact ttataaccgt ttcgccaaat tttcgtggtc
      961 aaggtattgg aaaaacgcta atttctcatt gcctagaaac ctttcatgat gaaaagatta
     1021 ctctatacgt tgccaagaac aataatcgtg cctacaagct gtatagaaat ttaggcttcc
     1081 aagtgattca aaaagaaaat agcacattga tgggagtact caccggtatc aaagaatggc
     1141 aaaaaatgga gtggatataa tgaaacgttg gaaaaaaata actatcgtat tgagcgcaat
     1201 catcgtcata ttagtggcga ttcttttcat cggaaacaat ttcgaaatga acgaaacaag
     1261 agtcacaatc ccaactactg gtggaagact ttctgcggtc gtgacaactc caaaacacga
     1321 gaaaccaaaa ggcattattg tgtttgttca tggtgacggg gcacaagaag caactcaaaa
     1381 cggtagctat agaccgctaa tggaacgctt tgccaaacaa ggatatatat ctgtttcttg
     1441 ggataaatta ggcgttggta actcctcagg caattggcta aatcagtcca tggaagaccg
     1501 cgcaaacgaa gtcaaccaag ttattgagtg gatgaaagtg aagtatcctg atagcaccac
     1561 caaaatcggc ttatggggcg ctagtcaagc cggctgggtg atcccaaaag caatgaatgc
     1621 aaataatgag attgctttct caatccttgc cgcccctgct atcaactgga tgcgacaagg
     1681 agaatataac accggctggc aagcgaaaga cgctggtaaa acaacgaaag aagtcaagca
     1741 agcacaacaa aatttcctca ccgacagcgc ccttatttct aaaaacaaaa cctacgaaag
     1801 ctacaaacaa aatggcggta aagaaaaaat gaccccagat cgctacaact ttatccgcaa
     1861 aaacatgaac caagatgcca ccctagacct ttcaaaagta aaagcaaaaa tctacctcgt
     1921 cttagctgaa aaagataaaa atgttgattc agcagaaaca aaagatgttt acacccaaca
     1981 aattaaaaaa gaaaacctag aaaccaaaac cgtcccaaat gtctcgcatc aaatgattaa
     2041 tcctgccatc gctaattcag agctactcat ccatattgtt ggcttaatgg ttccaaaata
     2101 ttttctagt
//
LOCUS       DASDXX010000277         2103 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.279, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000277 DASDXX010000000
VERSION     DASDXX010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.279"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(157..276)
                     /locus_tag="U0280_002799"
                     /pseudo
     CDS             complement(157..276)
                     /locus_tag="U0280_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464788.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
     gene            427..822
                     /locus_tag="U0280_002800"
     CDS             427..822
                     /locus_tag="U0280_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272719.1"
                     /translation="MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREP
                     DLEMVTQIATLYDVSVDYLLGQQSIPTYAPSELQNEKDIGKRITKISEDLKYEDDLNL
                     DGQPLNESAAAFLADSINFLYEQAKKIND"
     gene            902..2041
                     /locus_tag="U0280_002801"
     CDS             902..2041
                     /locus_tag="U0280_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM2272720.1"
                     /translation="MSEWYFKKNEQKMGPFTNVEMIALYRKKEINNLTLVQKSPHPEW
                     IAFKQTELYQHIGNHGNSELKISNLFSAVFKKHSKEEGEKVFIAGTKYTTPAISDIPH
                     SWPHPWVFSRVFLVLIVTYFLLLACTYLFDNSNTIPGLMVIGSFAVPFSVLLFFFETN
                     APRNISVFDVVRMFFIGGVAALVATLVIYSIIPVGKLNYFNALLVGFIEETGKMIIVA
                     LFIRSLNSKYILNGLLIGAAVGAGFAAFESLGYAFNYSVDAAFLFKDIHIAGETMLNV
                     IFSRGWQSIGGHVAWAAITGAALVIAKGDQKLGMHHIFTGTFWKWFIIPIALHFIWDC
                     PFNPLPAIAFKQIVLIIVVWFVILRLISKGLKQVSVISAASKAAK"
BASE COUNT          663 a          339 c          388 g          713 t
ORIGIN      
        1 cattatctcc tactgaaaaa acagatttta taagtatgtt tattgaagga attgaatatg
       61 taaaagatga tgaaaataaa gcggttataa cgaaaataag ttttttataa ataattgtca
      121 gtcaatcaaa agaattattt ataggttttt tgtcaaatac ggtgatgtgt acctatagcc
      181 catccgtcgc gcaatgaaag cttgggtgat tcctcgctgc aaccgtaatt ctcgaatttt
      241 tgttgtatta attcttctgg tgtctactgt tttcatgtca tcttctcctt atctacacaa
      301 tttgagttgt taatacaatt ctaacaacac aatacgacta tgtcaatcag aaaataatac
      361 gttatgtgtt aaaatgtagc taaactgagt aagatattgt ataatcaaac aaaaaggagt
      421 gaaattatgc caaatttaag taacagactt actttattac gggaaaaaca aggttggtca
      481 aaagcagaaa cagctagaag gcttggttta aaagcacctt ccacttatgg caattgggaa
      541 tatggtattc gggaaccaga tttagaaatg gtgactcaaa ttgcaacact ttatgatgtt
      601 agtgtcgatt atttacttgg ccaacaaagc atcccaacct atgctcctag tgaactccaa
      661 aatgagaaag atattgggaa aagaataact aaaattagtg aagatttaaa atatgaggat
      721 gatttaaatt tagatggaca accgctaaat gagtccgcag cagctttttt agctgattcg
      781 attaattttc tttatgaaca agcgaagaaa ataaacgatt agttcctttg ctcgtttaac
      841 ttttagcgtt tttgggaata attaatagag tcaaaataaa aagctaaagg gggagtttca
      901 tttgtcagaa tggtacttca aaaagaacga acagaaaatg gggcctttta caaatgtaga
      961 gatgattgct ctatatagaa agaaagagat taataatctt acattggtcc aaaaatcccc
     1021 tcatccagag tggattgcat ttaagcaaac agaattatat caacatattg gaaaccacgg
     1081 gaattcagaa ttaaaaatta gcaacctttt ctctgctgtt ttcaaaaagc actctaaaga
     1141 agaaggcgaa aaagtcttta ttgctggtac taagtatact actccagcaa taagtgatat
     1201 ccctcattct tggccacatc cttgggtatt ctcccgagtt ttcttagtgt taatcgtcac
     1261 gtatttttta cttctagcat gtacatattt gtttgataac agtaatacaa taccgggcct
     1321 tatggtaatt ggttcatttg cagttccgtt ttctgtttta ttattctttt tcgaaacgaa
     1381 tgcacctcgt aacatcagcg tttttgatgt agtgcgaatg ttctttatcg gtggtgtagc
     1441 agcgcttgtt gcaacacttg ttatttactc cattattcca gttggaaaat taaattattt
     1501 taatgcactt ttggttggtt ttattgaaga aactgggaaa atgattattg ttgctctctt
     1561 cattcgttca ttaaactcga agtacatttt aaatggttta cttatcggtg ccgctgttgg
     1621 ggctggattt gctgcatttg aatcacttgg gtacgcgttt aactatagtg tggatgctgc
     1681 ctttttattc aaagatattc atattgccgg tgaaacgatg ctcaatgtta tctttagccg
     1741 tggttggcag tctatcggcg gccatgttgc ctgggctgct attactggtg ccgcacttgt
     1801 tatcgctaaa ggtgatcaaa aacttggaat gcaccacatt ttcacaggaa ctttctggaa
     1861 atggtttatt attccgattg ctttacattt catttgggat tgcccgttca atccgcttcc
     1921 agcaattgca ttcaaacaaa ttgttttaat cattgttgtt tggttcgtta tcttacgact
     1981 tattagtaaa ggtttgaaac aagtttcagt catttctgcc gcgagtaaag cagctaaata
     2041 aaaaataagt cctaagaaaa tttcttagga cttattttta tactcaaaat taaaaatctg
     2101 aag
//
LOCUS       DASDXX010000278         2088 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.280, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000278 DASDXX010000000
VERSION     DASDXX010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.280"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..170)
                     /locus_tag="U0280_002802"
     CDS             complement(<1..170)
                     /locus_tag="U0280_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2272721.1"
                     /translation="MNKKLIGVDLGGTTAKLAILTKEGDIEEKWTIDTNIEDKGAHIV
                     KNIGDSINQKLT"
     gene            complement(195..407)
                     /locus_tag="U0280_002803"
     CDS             complement(195..407)
                     /locus_tag="U0280_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HEM2272722.1"
                     /translation="MKTVYDVAQLLRKHGIIVYLGKRQYDIEMMEYEITELFKHNILD
                     RETFARARSILKQELIKEQRKNSSLN"
     gene            complement(420..1958)
                     /locus_tag="U0280_002804"
     CDS             complement(420..1958)
                     /locus_tag="U0280_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM2272723.1"
                     /translation="MSFQEQYVFWRLTNYFLGVEKYRLIHLHEEKQELWLENTSQKKR
                     PVIRIQMKELSWANVVERDVTHTLHVTENLRKQMGRLKLPLVNIYITPFEPMGDISPF
                     FGQSIASPNEKVKLENILLANEQMRDHLDTLVKTLELPEEAFVLPNEITKELVAKERE
                     QVIAYITTKVNEEQKVARNSKPIVTYTFIGLLVVAFLWLSFQGGTTNSFNLIKWGGKF
                     NPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLGGIC
                     GNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSIASLVAINLLIDV
                     FSSQIDIAGHIGGLVGGFLLAGALSLPKQFFHWRRLAYGISLFGVAVLFLYFGYQKGE
                     QPYDPMQANVAVQQYLQEQNKKEATKITDNLISSGSADGYSYTYAASIALQDKQIDKA
                     ETMAKEAINIDKDIPEAHYYLSVCYRVKGDMPNAIKEANSARELSSNPFFDSYYDELE
                     KIKE"
BASE COUNT          639 a          408 c          306 g          735 t
ORIGIN      
        1 tccgttaatt tttgattgat agaatcccca atgtttttaa caatgtgggc gcccttatct
       61 tcaatatttg tatcaattgt ccatttttct tcaatgtcgc cttcttttgt taaaatagct
      121 aattttgctg ttgtcccgcc taaatctaca ccaattaatt ttttgttcat tctgctgttc
      181 tccttataat caatttaatt taaactacta ttttttcgtt gttctttaat taattcttgt
      241 ttcaatatac ttctagctct agcaaaagtt tctctatcta aaatattatg tttaaaaagt
      301 tctgttatct catattccat catttcgatg tcatattgtc gttttcctaa ataaacaata
      361 atgccatgct ttcttagtaa ttgggcaaca tcataaactg ttttcacatt aaaaacctct
      421 tattctttga ttttttctaa ctcatcgtaa taagaatcaa aaaatggatt gcttgataac
      481 tctctagcgc tgttcgcttc tttaattgca tttggcatat cgccttttac tctatagcaa
      541 acagataaat aataatgagc ttctgggatg tctttgtcga tattaattgc ttctttagcc
      601 attgtttctg ctttgtctat ttgcttatct tgtaaagcga tagatgcagc atacgtatat
      661 gaatagccgt cagcacttcc gctagaaatt aaattatcgg taatcttggt tgcttctttt
      721 ttattttgtt cttgaaggta ttgttgtact gctacattag cctgcatcgg atcatatggt
      781 tgttctcctt tttggtagcc aaaatacaaa aataaaacag ctacaccaaa aagtgaaatg
      841 ccatatgcaa gtcgtcgcca atggaaaaat tgttttggta acgataatgc tccggcaagc
      901 aagaaaccac ctacaagacc accaatatgt ccagcaatat caatctgact agaaaataca
      961 tcaattaaca aattaattgc gacaagtgac gcgatactga cgccaattgt ttttgcataa
     1021 agatttggtt ttaaaacaac caaataaagt aacgcgccca ttactgcaaa tactgcagta
     1081 cttgcaccaa cagataaatt catatttaat gcaaaactgg ctatgtttcc gcatattcct
     1141 cctaagagaa gaattagaac atatcgccat ttaccataaa tacgctctgc ccaagcacct
     1201 acaatataaa gcataactgc attggaagct aaatgcatta atccactatg aagaaaaatc
     1261 ggtgaaataa agcgccacca ttccccagca tatataagtg ggttgaattt cccgccccat
     1321 ttaattaagt taaatgaatt ggtagttcca ccttggaaag aaagccacaa aaacgctaca
     1381 accaaaagac caatgaacgt atacgtaact attggttttg aattcctagc aactttttgt
     1441 tcttcattta ctttagtagt aatatacgcg attacttgct ctcgttcttt tgctactagc
     1501 tctttcgtta tttcatttgg aagaacaaat gcttcttctg gtaattctaa agttttaacg
     1561 agtgtgtcta gatgatctct catttgttcg ttcgcgagta aaatattttc taatttcact
     1621 ttttcatttg gagaagcaat tgactgccca aaaaaaggcg aaatatcacc cattggttca
     1681 aatggtgtta tataaatatt cacaagaggc aatttcaagc gccccatttg cttacgaaga
     1741 ttttcggtaa cgtgtaaagt gtgtgtcaca tcacgttcca ccacattagc ccaacttaat
     1801 tctttcatct gtatacggat gactggtctt tttttctggc ttgtattttc caaccaaagt
     1861 tcttgtttct cctcgtgaag atggattaaa cggtattttt caacacccaa gaaataatta
     1921 gttaggcgcc agaagacata ttgttcttgg aagctcaaaa aattccctgc tttcattaca
     1981 aattatattt actactatac gcaaaaaaaa gggtgttgta aacaatccac cctattttct
     2041 atagaattat ttttccttat cctccaatta aaatagaaac tggttcgt
//
LOCUS       DASDXX010000279         2075 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.281, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000279 DASDXX010000000
VERSION     DASDXX010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.281"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     regulatory      69..116
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            122..610
                     /locus_tag="U0280_002805"
     CDS             122..610
                     /locus_tag="U0280_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HEM2272724.1"
                     /translation="MKMKILTVNAIIAALYVVLGMIVAPIGFMALQFRIPEIFNHLIV
                     FNKKYFWGIIVGVFITNLFFSGLGWIDLVFGVAQSAISLLLMIGISKYVKGIIPRMII
                     NTILFSLTMAIIAWELVIVFDLPFLITWATTAASEFIVMGVGIPLMYLLNKRLNFRKM
                     ID"
     gene            complement(642..1199)
                     /locus_tag="U0280_002806"
     CDS             complement(642..1199)
                     /locus_tag="U0280_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2272725.1"
                     /translation="MNNYVKVHQPLNVDLRTQKTQTKLYTVLERFYVEGRTFESISIK
                     DLCEQARVSRATFYRHHEEIIQVIEVQILRTMQYFSLEFDQIILTKENIQRLILRTIQ
                     KNPLLFQAIFWSRAENIFVDVVSGEILRISLLKEVSFSDSHFIPNYFARMILSLATEI
                     QQSNKDYTNGQLVELIQEAARFLQK"
     gene            1301..>2075
                     /locus_tag="U0280_002807"
     CDS             1301..>2075
                     /locus_tag="U0280_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2272726.1"
                     /translation="MKIITIEEHFESEVITNEINKVTGNLVSGQVSPEMFQYMQKELP
                     SAAEMQDTEKRLAFMDQHGIDIQVLSYGNSSPQNLDPKISVALCKRANDELAKVIQQN
                     PTRFAGFAVLPVGSPEDAAIELKRAVEELGFKGALVKGQFENKYFDNRFYYPIFEMAE
                     KLDVPISFHPSFIPETITEQYFASDAWSDVVTGVFSSAGFGWHMDVGIQVVRMILSGI
                     FDKLPNLKIITGHLGEMVPMFLNRMDNTLGHWTTLERKIS"
BASE COUNT          659 a          337 c          396 g          683 t
ORIGIN      
        1 ttttttatgt gcaataattc atttacatta acttccaaat atgagaaaat agcatgttgg
       61 caaaattgcc acacgtggtt cattcatacc atcccacgta aaaaaactag gaggaaaaat
      121 aatgaaaatg aaaattttga cggtgaatgc aattatcgcc gcactgtatg tagtgctcgg
      181 tatgattgtt gcaccaattg ggtttatggc attacaattt agaataccag aaatctttaa
      241 ccatctaatc gtctttaata aaaaatactt ttggggtatt atcgtaggtg tgtttattac
      301 gaatttattc ttttctggat tagggtggat tgatttagtt tttggcgtag cacaatcggc
      361 tatctcgctt ttactaatga ttggaatttc taaatacgtt aaaggaatta ttccgcggat
      421 gattattaat acgattcttt tctcgctaac gatggcaatt atcgcttggg agttagtaat
      481 tgtttttgac ttaccgttcc taattacttg ggcaacaaca gccgcaagtg aattcatcgt
      541 aatgggtgtc gggattccgc taatgtatct attaaataaa cggttgaatt tccgtaaaat
      601 gattgattaa atgagagagt ctaagggaac ttaggctctt tttatttttg taaaaagcga
      661 gctgcctcct gtatcaattc aactaattga ccattcgtat agtctttatt cgattgctga
      721 atttctgtcg ctaaacttaa aatcatccta gcaaaataat taggaataaa gtgactatct
      781 gaaaaggaaa cttcttttaa caaactaatt cgaagtattt ctccagacac tacatcgaca
      841 aaaatatttt ctgcccggct ccaaaaaatc gcttgaaata aaagcggatt tttttgaata
      901 gttcggagga ttaagcgttg gatattttct tttgttaaaa taatttggtc gaattccaaa
      961 gagaagtact gcatggttcg caaaatctgg acttcaatca cttgaataat ctcctcatga
     1021 tgacgataaa aagtggctcg tgatactcgc gcttgttcgc ataaatcttt tatagatatt
     1081 gattcaaatg ttctaccttc cacataaaac ctctccaaaa ccgtatatag tttggtttgt
     1141 gttttttgtg tacgtaaatc aacattcaac ggttgatgca cttttacgta gttattcata
     1201 aaactctcct ttttatgata cataattgtt attagtgtat cgaaatgtgg ctattttagc
     1261 aacttaaaaa ggggtattgt ttacttaagg aggaatgaac atgaaaatta taacaataga
     1321 agaacatttt gaatccgaag tcattacgaa tgaaatcaac aaagtcactg gaaatttagt
     1381 aagtggacag gttagtccgg aaatgtttca atatatgcaa aaggaacttc cttcagcagc
     1441 ggaaatgcaa gatacagaaa aacgtttagc atttatggac caacatggta ttgatatcca
     1501 agtactctct tatggaaata gttctccgca aaacttagat ccaaaaattt cggtagctct
     1561 gtgtaagcga gctaatgatg aactagcgaa ggtgattcaa caaaatccta cgcgatttgc
     1621 cggttttgct gtcttaccag taggatcacc agaagatgct gctattgaat taaaaagagc
     1681 cgtagaagaa cttggtttca aaggtgcact tgtaaaaggg cagtttgaaa acaaatattt
     1741 tgataatcgc ttttattatc cgattttcga aatggcggag aaactagatg taccgatttc
     1801 gttccatcca tcgtttatcc cagaaactat tacagaacaa tattttgcca gtgatgcttg
     1861 gtctgatgtg gtgacagggg tattttcatc tgctggtttt ggttggcata tggatgttgg
     1921 cattcaagtc gtgcggatga ttctttcagg tatatttgat aaattaccga atttaaaaat
     1981 catcacaggt catttaggtg aaatggtgcc aatgttttta aacagaatgg acaatacact
     2041 cggccactgg acaacgcttg aacggaaaat ttctg
//
LOCUS       DASDXX010000280         2056 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.282, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000280 DASDXX010000000
VERSION     DASDXX010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.282"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            502..2025
                     /locus_tag="U0280_002808"
     CDS             502..2025
                     /locus_tag="U0280_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
                     /protein_id="HEM2272727.1"
                     /translation="MSRIDIGEIQAFLYQLRAANEPGRKTIQSIKAAVTKYVGDNSLK
                     GKAVDASKNYYQMTYFPLCDAIIEAMDESEERLGQYIQDFHAEVDSSPDAKIDADGLY
                     ELGKMIDRIESKKEALAQRMNSGTEGQMQNYRSQLAIAYKQENILEKYLSFEQSHASF
                     FDHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNHATVSHMQQALNKARGIKEDI
                     IKELQDYTVLAVVYLDSNGKEQVMWLLERDGLGVENAELKAYLEKNGKYLNPEDYSII
                     TNEDLNKKINKAWRDGVYYLNGNKYDGLTGGILSTSAYVEAGKGFIDKSGLADVVLGL
                     GLSTAAIRGSVTFGKKNKLKGYDYLDDLLGDLNNKVKIKKYDSAESVNKYWHQQNYDQ
                     PPYTPKTPVQDLELLVETKFVRVYDGGSSKLHGGWLMKAEDIKGLTPTQIKDKFALPN
                     IPKFVGEVTLPKGSNIRMGEVNPLFENKGGGIQFDLKGQFIGEFKELGKISEWGGLK"
BASE COUNT          765 a          310 c          436 g          545 t
ORIGIN      
        1 atacatctgc tacgtagaag gaaaagataa agctatagaa aaactatttg ctagtttgcg
       61 gacagacaaa gaaattgcta tactaaacaa aagaatacaa aaggatacaa ttaatataga
      121 aaatgtttat aaagaatact tgcggggcat aaatggggca gagcaaaaca acatataaat
      181 acttatagct tcttgtaaca gcttttaaaa aggcataaac cgcgtaacaa agccgatttc
      241 ttcccgtgaa tgcgtataac tgctcaacac aaaaccaact cttaatcagc gggtcggggg
      301 ttcgaaaccc tcacaaccca taaaaaacaa acgccagtga ctgttaaagt cgttggtgtt
      361 ttgtcgtttt tacgggcaaa atgttaataa tttcaataat aagctgattt ctttttgatt
      421 atttatcgat tacatagaaa ataagtggaa tttcaaagta tctaataatt tactacatga
      481 tatacaaaag gagttgtttc agtgagtaga attgacatcg gagaaataca agctttttta
      541 taccagctac gtgcagccaa tgaaccagga aggaaaacta tccaatctat caaagcggcc
      601 gtgacaaagt atgtgggaga taatagttta aaaggaaaag cagttgatgc atcgaaaaat
      661 tattatcaaa tgacttattt ccctctctgt gatgcaataa tcgaagctat ggacgaaagt
      721 gaagaaagat tggggcagta catccaagat tttcatgccg aagttgatag ctcaccagat
      781 gccaaaatcg atgcggacgg tttatatgaa ctgggtaaaa tgattgaccg aatagaaagc
      841 aaaaaagaag ctttagcaca gcgaatgaac agtggaacag aagggcaaat gcagaattat
      901 cgttctcagt tagctattgc gtataaacag gaaaacattc tcgagaaata tttgtcattt
      961 gaacaaagcc acgctagctt ttttgaccat ttgattgact tagttcaagc agttcagcag
     1021 accatccgcg aactccagtc gaatatccag ttcaacagcc agacaggcac ttacgatcta
     1081 agtaagctga atcacgctac agtgagccac atgcaacaag ctttaaataa agcacgagga
     1141 ataaaagaag atattataaa agaactacaa gactacacag tgcttgcagt ggtatattta
     1201 gatagtaatg gaaaagaaca ggtgatgtgg ttattagagc gagacggctt aggagtggag
     1261 aatgccgaac ttaaagccta tttagaaaaa aacggaaaat atcttaatcc agaagattat
     1321 tcgattatta ctaatgaaga cttgaataag aaaatcaata aagcttggcg agatggtgtt
     1381 tattatctaa atggtaacaa gtatgatgga ctaactggcg gtattttatc tacctcggca
     1441 tatgttgaag ctgggaaagg gtttatagat aagagtgggt tagcggatgt tgtgctgggg
     1501 cttgggttga gtacggctgc gattagaggg agtgtgacat ttggtaagaa aaataaactg
     1561 aagggttatg attatttaga tgacctgttg ggcgatttaa ataataaagt gaaaataaag
     1621 aagtatgact ctgctgaaag tgtcaataaa tattggcatc aacaaaacta tgatcaacct
     1681 ccatatacac ctaaaacacc tgtccaagat ttagaacttt tggtagaaac taaatttgtc
     1741 agggtatatg atgggggaag ttcaaaacta catggtggat ggcttatgaa agcagaggat
     1801 ataaaaggtt taacaccgac tcaaattaaa gataaatttg cattacctaa tatacccaaa
     1861 tttgttggag aagttacttt gccaaaaggc agcaatatca gaatgggaga agtaaatcct
     1921 cttttcgaaa ataaaggtgg gggtatacaa tttgatttga aaggtcaatt cattggtgaa
     1981 tttaaagaac tcggaaaaat ctcagaatgg ggcggattaa agtgacaatt aacgcagaat
     2041 acattgataa taaatt
//
LOCUS       DASDXX010000281         2040 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.283, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000281 DASDXX010000000
VERSION     DASDXX010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.283"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..303
                     /locus_tag="U0280_002809"
     CDS             <1..303
                     /locus_tag="U0280_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2272728.1"
                     /translation="ITELMVIFAEKGFVEEATSLMGLMNTVVERVQELNYFMEYTEIL
                     LLYQQDEQVSYEKKMIQLLKKINASNDPALIERVKKHASKHFAKSTKYKMAYDILS"
     gene            400..>2040
                     /locus_tag="U0280_002810"
     CDS             400..>2040
                     /locus_tag="U0280_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2272729.1"
                     /translation="MQKKLIGSLFILIVLLIIGSTSEKVQASPTSSNGWQLKWAIKNN
                     DFEDVDIEDYGVDAGTTNVWQVNQKGVEAWGTTNPTGNIEVWQNGNGYNVPAFSGNNF
                     IELNSDGIGPVYQDIRTIPGSNLTWKFSHRGRMGVDTADLLIGSPESQTEVSRVSDGE
                     TWGSFEGNYIVPEGQTITRLTFNPISTASGSLTSGNFLDDIQLYINVNGAKIGDVVWY
                     DFNGDGIQQDSEEPAPFVKVDLLTKDGVFKESATTNNIGSYLFTDVLPGDYQVKFTLP
                     NNDFIFSKANQGNDTTLNSKPDKTGIASVNVPNLKSENFDMDAGITTNGKVEIQKFSG
                     DKALSGAVYAIKDNSQSEVAKITTGQNGTGTAEGLPPGKYTATEVTAPLGYQKNPTPK
                     TFTITYGDTNPVKLTFQNVEKTGSITIFKQDEANKKGLANAVFDVKSTDGTTLKKVTT
                     NSKGYALAENLQPGTYVITEATAPPGYEKSTKEIRVTIPFNPQKTINISFSDNKIMVP
                     KKPTPTKGSTVVKVSGETTKITALPQTGDSSNSSTIFIG"
BASE COUNT          733 a          322 c          432 g          553 t
ORIGIN      
        1 ataacagaac tgatggttat ttttgcggaa aaaggttttg ttgaagaagc aacttcatta
       61 atggggctga tgaatacagt agttgagcga gtacaagaac tgaattactt tatggaatac
      121 accgaaatat tgcttttata tcaacaggat gagcaagtaa gttatgaaaa gaaaatgata
      181 caattactga aaaaaattaa cgcatcaaat gatccagcat taattgaacg agtgaaaaag
      241 catgcaagta aacatttcgc caaatcaacg aaatataaaa tggcatacga tattttgtct
      301 taatattaga aacagctagt tgttatactg gctgttttct tttgcttttt tgcgggtaat
      361 taaaggtgtt aggtttaggg cgaaaaaggg ggagaaagca tgcaaaaaaa attaataggt
      421 agtttgttta ttctaattgt cttacttatt attgggagca cttctgaaaa agtgcaagct
      481 tctccaacat cttcaaatgg ttggcaatta aaatgggcca ttaaaaataa tgattttgaa
      541 gatgttgata tcgaggatta tggtgtagat gctggtacga caaatgtttg gcaagtaaat
      601 caaaaaggtg tagaggcctg gggaacaact aatccaactg ggaatattga agtatggcaa
      661 aatggtaatg gatacaatgt gcctgctttt tctggaaaca attttattga attaaactcg
      721 gatggtattg gtccagttta tcaagacatt cggacaatcc caggttccaa tttaacttgg
      781 aagttctcac accgggggcg catgggggta gacacggctg atttacttat tggctcacca
      841 gaaagtcaaa ccgaagtgtc gcgagtttct gatggagaaa catgggggag ttttgaaggg
      901 aattatatag tgcctgaagg acagactatc acaaggctaa ctttcaatcc tatttcaaca
      961 gcaagtggct cacttaccag cggaaatttt ttggatgata ttcagttgta tattaatgta
     1021 aatggcgcaa aaattggcga tgttgtttgg tacgatttta atggggatgg tattcaacaa
     1081 gatagcgaag aacctgctcc tttcgtaaag gtagatttat taacgaaaga tggtgtgttt
     1141 aaagaaagtg cgaccacgaa taatatcggc tcttatttat tcacagatgt tttgccgggg
     1201 gactatcaag tgaaatttac cctaccgaat aatgatttta ttttttcaaa agcaaatcaa
     1261 ggcaatgata cgacgcttaa ttccaagcca gataaaacag ggatagcttc agtaaatgta
     1321 cctaatttaa aaagtgagaa ttttgatatg gatgcgggaa taacgacgaa tggtaaagtc
     1381 gaaattcaaa aattttcagg agataaggcg ctgagtggag cggtttatgc cattaaagat
     1441 aattctcaat cagaagtggc gaaaataacg actggtcaaa atggtacagg gacagcggaa
     1501 gggctgccac cagggaagta tacagcaacc gaagttacag cacctcttgg ttatcagaag
     1561 aacccaacac caaaaacatt cactatcacg tacggcgata caaatcctgt caaactcact
     1621 tttcaaaacg ttgagaaaac aggatcaatt actattttta aacaagatga agcgaataaa
     1681 aaaggtctag caaatgccgt tttcgacgta aagtcaacag atggaacgac attaaaaaaa
     1741 gtaactacaa atagtaaagg ttatgctctt gctgaaaact tacaacccgg aacttatgtc
     1801 ataacggaag caacagcacc acctggctat gaaaaatcaa ccaaagaaat tcgcgtaacg
     1861 ataccattta accctcaaaa aactattaat atttctttta gtgataataa aataatggta
     1921 cctaaaaaac cgactccaac aaagggaagt acagtggtga aggtaagtgg agaaacgaca
     1981 aaaattactg ctctaccaca aacgggcgat agttcaaata gctcaacaat ttttatagga
//
LOCUS       DASDXX010000282         2039 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.284, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000282 DASDXX010000000
VERSION     DASDXX010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.284"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            149..1972
                     /locus_tag="U0280_002811"
     CDS             149..1972
                     /locus_tag="U0280_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEM2272730.1"
                     /translation="MASPLKRLLIGRPLKTSEAGDQKLGKLKALAVLSSDALSSIAYG
                     TEQILLVLVTVSAAAMWYSLPIALCVLVLLFALNLSYKQIIYSYPHGGGAYIVSRENL
                     GNNAGLIAGGSLLVDYMLTVAVSVSSGTDAIVSAVPSLYPFAVPIAVLLVVGVTIINL
                     RGITESASLLAIPVYLFVFSIIALIFTGLFKVLTGMDASHETAAVGTHVQGVTIFLLL
                     RAFASGSASLTGIEAISNAVPLFKEPRPKNAAKTLTLMAGLLGFFFVGITVLAFVYGT
                     VPELKVTVLSQIAENVFGRNFMFYFIQATTALILVLAANTGFSAFPMLAFNLAKDKFM
                     PRMYLARGDRLGYSNGIITLAVGSILLIILFKGKTELLIPLYSVGVFIPFTLSQTGMI
                     VKWWKQRPKGWKKSLSANLLGASISFTVLLVLFLTRIESVWPVFVFMPIMIYVFHRTR
                     HHYRKVGPQLRIDETMDLPDFKGNAVIICVSDTTKVVEGALQYAKSIGDTVIAVHISI
                     DKKQEKEFVERWNRVHPEVRMANLFSPYRSISDPLMKFIDTAKQKADQDNYSLTVLIP
                     QFIPRKGWQNVLHNQTSLLIRTRLLMKRDVVVSTYPYHLKE"
BASE COUNT          623 a          341 c          396 g          679 t
ORIGIN      
        1 caagcattat gaacaattat tcacttgaaa gataattagt cagctaaaat aatacaaatt
       61 agtattacaa tctaaaatca gctgtgctat aatgtgtctg gtcaacttga agttagctaa
      121 aaatcaaata aaaaaggtag ggaatacaat ggcttcgccg ctaaaaagac tattaatcgg
      181 ccgccctctg aaaacatcag aagctggaga ccaaaaactg gggaaattaa aagctttagc
      241 agttctgtca tcagatgcac tttcttctat tgcgtatggt acagaacaga tcttattggt
      301 acttgtaact gttagtgctg ccgctatgtg gtattcatta ccaattgcgc tttgtgtact
      361 tgttcttttg tttgctctta atctgtctta caaacaaatt atatactctt atccgcatgg
      421 tggaggagct tatatcgttt caagagagaa tttggggaat aatgccggtt taatcgcagg
      481 tggatcttta ctagtagatt atatgcttac agttgctgta agtgtttctt ctggaacaga
      541 tgcaatcgtt tctgctgtcc catcattata tccgtttgca gtgcctatag ctgtacttct
      601 tgtcgttgga gtaacgatta tcaatctgag aggtattact gaatcagcta gtttacttgc
      661 aataccagta tatttgtttg ttttttctat tatagctctt atatttacag gtttatttaa
      721 agtattaact ggtatggatg caagtcatga aacagctgca gtagggactc acgtacaggg
      781 tgtaaccatt tttcttttac taagagcatt tgcatctggg tcagcttctt taacgggtat
      841 tgaagctatc tcaaatgctg ttcctttatt taaagaacca cgaccaaaaa atgccgcaaa
      901 aacattaaca ttaatggcag gcttacttgg tttcttcttt gtcggaataa cagtacttgc
      961 ttttgtttat ggaactgttc ctgagctaaa ggtaacggtg ctttctcaaa ttgctgaaaa
     1021 tgtatttggc agaaacttca tgttttattt tattcaagcc actacggcac ttattttagt
     1081 tttagcagct aataccggat tttctgcatt tccgatgtta gcatttaact tggcgaaaga
     1141 taaatttatg ccaagaatgt atttagcaag aggagataga ctgggctact ctaatgggat
     1201 tattacttta gctgtgggtt ctatcctact cattattttg tttaaaggga aaacggaatt
     1261 actcattcca ttatactctg tcggagtgtt cataccattt acgttgtctc aaacagggat
     1321 gatagtaaaa tggtggaaac agcgtcctaa aggttggaaa aaatcattat cggctaattt
     1381 acttggagca tcaatttcat ttacagtatt attagtgtta ttcttaactc gaattgaatc
     1441 tgtttggcca gtatttgtct ttatgccaat tatgatttat gttttccatc gtacgagaca
     1501 tcattatagg aaagtcggac cgcaacttag aattgacgaa acaatggact tgccggactt
     1561 taaagggaat gccgtcatta tttgtgtgtc tgataccacc aaagttgtag agggtgcatt
     1621 acaatatgct aaatctattg gtgatacagt cattgctgtt catatctcta ttgataaaaa
     1681 acaggaaaaa gaatttgttg agagatggaa tagggtgcat cctgaagtgc gtatggctaa
     1741 tctgttttct ccgtatcgat ctatttcaga tccattaatg aagtttattg atacagctaa
     1801 acaaaaagca gatcaagaca attactcact aacagtatta ataccacaat ttattcctag
     1861 aaaaggttgg caaaatgtcc ttcataatca aacaagccta ttgattcgca caagacttct
     1921 aatgaaaagg gatgtagtgg tttccacata tccttatcat ttaaaagaat aacaagagaa
     1981 aaaaacggaa gagaccttcg ggggaagagg gggaactctt ccgtttttgt aatggaaca
//
LOCUS       DASDXX010000283         2031 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.285, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000283 DASDXX010000000
VERSION     DASDXX010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.285"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..2021)
                     /locus_tag="U0280_002812"
     CDS             complement(<1..2021)
                     /locus_tag="U0280_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2272731.1"
                     /translation="MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSL
                     DTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPDVREQPVADSDDSDLTVVSSGAYW
                     TIYRNTANGEYSMRMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFASYFRNNVFT
                     VLESVRIERSNLSGVTSFEMAFYSPTLQKVIIRDNDYPTAPSLRTTEYMFGYTHKLTE
                     LDVSGLDTSAVTNMNCMFNYCSVLEELDVSNFDTSSVTTMRDMFGSSGKLEKLDVSNF
                     DTSSVTTMQAMFYGCTSLEELDVSNFDTNSVTNMSYMFYNCAGLEELDVSNFDTSSVT
                     NMYGTFVGCNSLEELDVSNFDTSSVTTMQAMFNACRALEKLDVSNFDTSSVTTMQAMF
                     ENCTGLGELDVSNFDTSSVTTMAYMFDGCTSLEELDLSNFDTSSVTTMAYMFQNCTAL
                     KSLYLDNFTTPKTMTGMFTGTTALTYLFASHNLRAFDGLANTRWYDEKNWVQFSNYKE
                     LQMYHEYQREPTGYRKGVFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWEEVVPVKEGH
                     YFDGWYLDRNFTNKFDFSLPVAVSTTIYAKWVENYTVVIPASISLNEATELKVEGINR
                     GSKTLSVGLNYEETTISESNKLTLSNTADTTVQCLAPLSWDGSETNPKNA"
BASE COUNT          614 a          466 c          331 g          620 t
ORIGIN      
        1 gcattttttg gattagtttc ggaaccgtcc caactcagtg gcgccaagca ttggactgtt
       61 gtgtctgccg tattggacaa ggttagcttg ttgctctcag aaatggttgt ttcctcataa
      121 ttcaagccta cggataaagt tttacttcct cgattaatcc cttctacttt caattcagta
      181 gcttcattta aggaaataga agctggaata accaccgtat aattttctac ccatttagcg
      241 tagatagttg tagatacagc aacaggcaaa gaaaaatcaa acttattagt gaagtttcga
      301 tcaagatacc acccatcaaa ataatgtcct tcttttacag gaaccacttc ttcccagtat
      361 tccccagaaa ctttattttg taccttttgt tcctccgcgt cttcaaactg cccacccatc
      421 gcatccatcg ttaaggaaag gaacacacct tttctgtagc cagtaggttc cctttggtat
      481 tcatgataca tctgtagttc cttgtaattc gaaaactgta cccaattctt ttcgtcatac
      541 catcttgtat ttgctaggcc atcaaaagct cttaaattgt gactggcaaa caagtaggtt
      601 aaggcggtgg ttccagtaaa catacctgtc atagtctttg gggtagtaaa attatccaga
      661 tataaagatt ttaacgctgt acaattttga aacatgtaag ccatagtagt tactgaactg
      721 gtatcaaaat tacttaaatc taattcttca aggctagtac atccatcaaa catgtaagcc
      781 atagtagtta ctgaactcgt atcaaagtta cttacatcaa gctctccaag gccagtacaa
      841 ttttcaaaca tggcctgcat agtagttact gaactcgtat caaaattgct tacatccagc
      901 ttctcaagtg ctctacaggc attaaacatg gcctgcatag tagttactga actcgtatca
      961 aagttactta catcaagctc ttcaagacta ttacagccaa caaacgtgcc atacatatta
     1021 gtaacggaac tggtatcaaa attacttaca tcaagctctt caagaccagc gcaattgtaa
     1081 aacatgtagc tcatgttagt cactgaattg gtatcaaaat tacttacatc aagctcttca
     1141 aggctagtac aaccataaaa catggcctgc atagtagtta ctgaactggt atcaaaattg
     1201 cttacatcca gcttctccaa ttttccacta ctaccaaaca tgtccctcat agtagtaacg
     1261 gaactggtat caaaattact tacatccagt tcctcaagta cgctacagta gttaaacata
     1321 caattcatat tagttacagc actcgtatca agaccactca catcaagctc cgtaagtttg
     1381 tgagtataac caaacatata ctccgtagtg cgtaaagatg gtgctgtcgg ataatcattg
     1441 tctctgatta tcactttttg aagtgttgga ctataaaatg ccatttcaaa agatgtcact
     1501 ccagacaagt ttgaacgttc aatcctcaca ctctcaagta ctgtgaaaac attatttcta
     1561 aaatacgatg caaaacttcc tgtcagcgta gcttcttcaa tctctatatg tttaatgctt
     1621 tttaaataac tattccaagc ggttggtcta ctgctcggca cgttgccaaa catacgcatg
     1681 ctatattcgc cgttcgcagt attacgataa atcgtccagt aagcacctga gcttaccact
     1741 gttaaatccg aatcatccga atcagcaaca ggctgctctc gaacatctgg attttgcatc
     1801 aactcatccg tagttgggat ttcttctaga ttctcgacct cggctggttt ctcttgcgca
     1861 acttcttctg caatgagatt agaggtatcc agagaaccca gctcctcttc tggaagctta
     1921 ttcgttgtat ccctttcttg tgcgatagaa acattagcgc tcccaaaagc aataaaaagc
     1981 acagaaataa taaggaccac tcgcatggaa aactttttca tcagctcccc t
//
LOCUS       DASDXX010000284         2030 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.286, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000284 DASDXX010000000
VERSION     DASDXX010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.286"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            31..507
                     /locus_tag="U0280_002813"
     CDS             31..507
                     /locus_tag="U0280_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM2272732.1"
                     /translation="MYKYTLCFIQRADEILLLNRQKSPWMGSWNGVGGKIEQGETLLE
                     SVQREITEETGISSNDYEIRDIGEMKWFVDGENLGGMHLFLANLPDNYVYPTPRATDE
                     GILDFKKRKWILNPENTGVVNNLPYIIKHAPVFPARIEVSTKYHENTLLHINHQSL"
     gene            complement(545..790)
                     /locus_tag="U0280_002814"
     CDS             complement(545..790)
                     /locus_tag="U0280_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272733.1"
                     /translation="MNKLLLITAAGYIVGVRSIEKENNQSILLNDVYINNPSQRLIDH
                     FESLEIAKEQVIGHKKLSTNDAQNLISRWEASYFTTS"
     gene            complement(787..1992)
                     /locus_tag="U0280_002815"
     CDS             complement(787..1992)
                     /locus_tag="U0280_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2272734.1"
                     /translation="MKEKLFNKGFVLITLINFVVYLVYYLLMVIIAVIAQEELNASLG
                     EAGFASGIYIIGTLLARLYMGKKLELFGRKRVLRFGILFFLVTTMAYLYMPTIAIMFI
                     IRFLNGFAYGTTSTATNAIVTAYIPNSRNGEGINYYGLSTSLAAAIGPFIGMILLSKT
                     SFYTIIIFSTVIVLLTALLCFYLPVKNIVLTTEHRKALQTWTVKSFIEYKVIPITFIA
                     FLMGISYSSVLTFLASYAREINLVSAGTFFFVVYALVITLTRPMSGKLFDAKGEKYVM
                     YPSYLFLAVGLVVLSTATSSLVLLISGGLIGLGYGTFMSNGQAVCLKVCEPHRIGIGL
                     STYFIGLDLGLGIGPYIMGEIHHVLSFQGIYIIAGAIAFICVFIYMFLSRKKVSSGAQ
                     EQLKGSEEV"
BASE COUNT          712 a          375 c          360 g          583 t
ORIGIN      
        1 gaataaaaaa cttggaaaat aggtggaaat atgtataaat ataccctttg ttttatccaa
       61 agagccgatg aaattctatt gttaaataga caaaaatccc catggatggg aagttggaat
      121 ggtgttggtg gcaaaattga gcaaggggaa acacttcttg aatcggtcca acgggaaatc
      181 acagaagaga ccggaatttc ctcaaatgac tacgaaattc gtgatatcgg tgaaatgaaa
      241 tggtttgtgg atggcgaaaa tctgggaggt atgcatttat ttctggccaa tcttccggat
      301 aattatgtat atccaacacc tcgtgcaacc gatgaaggaa tacttgattt taaaaaaaga
      361 aaatggatac ttaatccgga aaatacaggt gtagtgaaca atttacctta tataatcaaa
      421 catgctccag tgttcccggc tagaatagaa gtttcaacaa aatatcatga gaacacatta
      481 ttgcatatta atcatcaatc tttataaaaa aagcattgcg attattcgca atgcttccat
      541 actatcatga tgtcgtgaaa taacttgctt cccagcgact tattaaattt tgagcatcat
      601 tagtggataa ctttttatga ccgattactt gctctttggc aatttcgaga ctctcaaaat
      661 gatcaattaa tcgttgtgaa ggattattaa tgtagacatc gtttagtaga atagattggt
      721 tgttctcctt ttctatactt ctaactccta cgatataacc cgctgctgta atgagtaata
      781 atttattcat acttcttcac tcccttttag ttgttcctgt gcaccactag acactttttt
      841 tctggataag aacatataga tgaatacgca aataaatgcg atagcaccgg caataatgta
      901 aataccttgg aatgaaagca catgatgaat ttcacccata atataaggcc caataccaag
      961 tcctaaatca agcccgataa agtaggtaga taggccaatc ccaatacggt gaggttcaca
     1021 tacttttaaa cagacagctt ggccattcga cataaacgtt ccataaccta agccgatgag
     1081 tccgcctgaa ataagtagca cgagacttga tgttgctgta ctaaggacca ctaatccaac
     1141 tgctaaaaag agataacttg gatacatcac atatttttcg ccttttgcat cgaaaagttt
     1201 tccagacatt gggcgagtta gagtaataac taatgcatag acaacaaaga agaacgttcc
     1261 agcactcact aaattaattt ctctagcata ggaagcaagg aatgtaagca cactggaata
     1321 agaaatcccc attaagaagg caataaatgt tattggaata actttatatt caataaaact
     1381 tttgacggtc caagtttgta aggccttccg gtgttcggtt gttaaaacaa tatttttcac
     1441 gggtaaatag aagcaaagta gcgcagttaa taagacaata accgtggaga aaataataat
     1501 cgtataaaag ctcgttttgc taagtaaaat cattccgatg aacggtccaa tcgcagctgc
     1561 gagacttgtg ctgaggccat aataattaat cccttctccg tttctagaat taggaatata
     1621 agctgtgaca atcgcattgg tagcagttga agttgttccg tatgcgaatc catttaaaaa
     1681 acgaataata aacataatgg caatcgttgg catgtataag taagccatcg tcgttactaa
     1741 gaaaaataaa atcccaaatc ttaaaacccg cttacgacca aatagttcca gctttttccc
     1801 catgtaaagt cgtgcgagga gcgtcccgat aatataaatc ccagacgcaa atccggcttc
     1861 accaagagac gcgttcaact cttcttgagc aataacggca ataataacca ttagcaaata
     1921 ataaacgaga taaacgacaa agttaatcaa tgttattaag acaaaaccct tgttaaataa
     1981 tttttctttc atagaataaa atcccttcct acctataatt tgtaatttat
//
LOCUS       DASDXX010000285         2020 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.287, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000285 DASDXX010000000
VERSION     DASDXX010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.287"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..173
                     /locus_tag="U0280_002816"
     CDS             <1..173
                     /locus_tag="U0280_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272735.1"
                     /translation="GEEASIPEPPELTELEKLTQDYADLMLYVAEVEQKTEQTQQDNA
                     NLLLSLAEAGAL"
     gene            173..319
                     /locus_tag="U0280_002817"
     CDS             173..319
                     /locus_tag="U0280_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HEM2272736.1"
                     /translation="MINWYEKVKDYFLGGYYTEADVNKFVTLKKITRSQADEIIAMKE
                     AKAE"
     gene            356..721
                     /locus_tag="U0280_002818"
     CDS             356..721
                     /locus_tag="U0280_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272737.1"
                     /translation="MYEGLTKVFDYALAKEMFFAALFVALFIILLIITKRIWDDSKIV
                     RVEMKEERDKMETEREKRDKESKEERDKFISTMNEQQRLMDKQNDMMGQQQQSIDSLS
                     KSVGKLAHKVDLLEHKITK"
     gene            734..1015
                     /locus_tag="U0280_002819"
     CDS             734..1015
                     /locus_tag="U0280_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HEM2272738.1"
                     /translation="MEFGKELLVYMTFLVVVTPVFVQAIKKTELIPSKWLPTVSIFVG
                     AILGALATFLDGSGSLATMIWAGALAGAGGTGLFEQFTNRAKKYGKDDK"
     gene            1015..1884
                     /locus_tag="U0280_002820"
     CDS             1015..1884
                     /locus_tag="U0280_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase family
                     protein"
                     /protein_id="HEM2272739.1"
                     /translation="MALTEAWLIEKANRKLNAGGMYKITSDKTRNVIKKMAKEGIYLC
                     VAQGYRSTAEQNALYAQGRTKPGAIVTNSKGGQSNHNYGVAVDLCLYTNDGKDVIWES
                     TTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEKIPTATQNTNTNSNRYE
                     GKVIDSAPLLPKMDFKSSPFRMYKVGTEFLVYDHNQYWYKTYIDDKLYYMYKSFCDVV
                     AKKDAKGRIKVRIKSAKDLRIPIWNNTKLNSGKIKWYAPNVKLAWYNYRRGYLELWYP
                     SDGWYYTANYFLK"
BASE COUNT          727 a          300 c          454 g          539 t
ORIGIN      
        1 ctggtgaaga agcaagcatt cctgaaccgc cagaattgac cgagcttgaa aaattaacac
       61 aagattatgc ggacttaatg ctttatgtag cagaagtcga acagaagacg gaacaaacgc
      121 aacaagataa tgcaaactta ctattatctt tggcggaggc aggtgctttg taatgattaa
      181 ttggtatgaa aaagtgaaag attatttttt aggcggctac tatactgaag cagatgttaa
      241 taaattcgtt actctaaaaa agataacgag atcacaagca gatgaaataa tcgctatgaa
      301 agaagcaaaa gccgaatagg cttatttttt atgttgaaaa taggggatgg ttgggatgta
      361 tgaaggctta acgaaagtat ttgattatgc tttagcaaaa gaaatgtttt tcgcggcgct
      421 atttgtcgca ctgtttatta ttttgttgat tattactaaa agaatctggg atgactcaaa
      481 aatagtaaga gtagaaatga aagaagagcg ggacaaaatg gaaacagagc gggagaagcg
      541 ggataaagaa tcgaaagaag aacgagataa gtttattagt acgatgaacg aacaacagcg
      601 tttaatggac aagcaaaatg acatgatggg gcaacagcaa cagtcaattg atagtttgtc
      661 aaaatcggtc ggtaaattag cacataaggt agatttacta gaacacaaaa ttacaaaata
      721 aaggatgata aaaatggaat ttggaaaaga gttactagtt tatatgacat ttttagtagt
      781 tgtaacgcct gtttttgtgc aagcaattaa aaaaacagag ctaattcctt cgaaatggct
      841 tccaacagta agtatttttg ttggggccat tttaggggcc ttagcgacat ttttagatgg
      901 ttctggatcg cttgcaacaa tgatttgggc aggtgcatta gcaggagctg gcggaaccgg
      961 tttgttcgaa caatttacta atcgagctaa aaaatatgga aaggatgata aataatggca
     1021 ttaacagagg catggctaat tgaaaaagca aatcgcaaat tgaatgctgg gggaatgtat
     1081 aaaattacat cggataaaac acgaaatgta attaaaaaaa tggcaaaaga aggtatttat
     1141 ctttgtgttg cgcaaggtta ccgctcaaca gcggaacaaa atgcgctata tgcacaaggg
     1201 agaaccaaac ctggagcaat tgttactaat tccaaaggcg ggcaatctaa tcacaactac
     1261 ggggtagctg ttgacttgtg cttgtataca aatgacggaa aagatgttat ttgggagtca
     1321 acaacttccc ggtggaaaaa ggttgttgct gctatgaaag cagaagggtt taaatggggc
     1381 ggagactgga aaagttttaa agactatccg cattttgaac tatgtgatgc tgtaagtggt
     1441 gagaaaatcc ctactgcaac acaaaacact aatacaaatt caaatcgtta cgagggtaaa
     1501 gtcattgata gcgcaccact gctaccgaaa atggacttta aatcatcacc attccgcatg
     1561 tataaggtag gaactgagtt cttagtatat gatcataatc aatattggta caagacatac
     1621 attgatgata aactttacta catgtataaa agcttttgcg atgttgtagc taaaaaagac
     1681 gcaaaaggtc gcatcaaagt tcgaattaaa agcgcgaaag accttcggat tccaatttgg
     1741 aataacacaa aacttaacag cgggaaaatt aaatggtatg cacccaatgt aaaactagcg
     1801 tggtacaact atcgaagagg atatttagag ctttggtatc cgtcagacgg ctggtactac
     1861 acagctaact acttcttgaa ataaaactat tgccctcgct tttgcggggg tttttggtcg
     1921 agtagacaca tcaacaaaca tctgttccaa ttgatattga ttgtaataag aggttataat
     1981 gacataaaaa cgttttattg ggagcgggtg tttattacga
//
LOCUS       DASDXX010000286         1988 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.288, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000286 DASDXX010000000
VERSION     DASDXX010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.288"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..607
                     /gene="lexA"
                     /locus_tag="U0280_002821"
     CDS             <1..607
                     /gene="lexA"
                     /locus_tag="U0280_002821"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEM2272740.1"
                     /translation="SKRQQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLA
                     RLEGKGLIRRDPTKPRAIEILSLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFP
                     LPEYMAAGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENEATC
                     KRFYKEANHFRLQPENDALEPILLNNVTILGKVIGLYRDIR"
     gene            638..1162
                     /locus_tag="U0280_002822"
     CDS             638..1162
                     /locus_tag="U0280_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272741.1"
                     /translation="MIYFETERLIARDYLASDYLPFSQMNADEQVMKYFPARLTQNES
                     NAFLDRIQEELKSLGYGLFAIEVKSTGEFIGFTGFHEATFEATFTPCTEIGWRLKHSA
                     WNQGYATEAALGALAFAEEINTINEIYSFTAALNKPSENVMKKIHLTKIATFEHPALV
                     NGDPLKPHVLYKKA"
     gene            complement(1196..>1988)
                     /locus_tag="U0280_002823"
     CDS             complement(1196..>1988)
                     /locus_tag="U0280_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arsenical efflux pump membrane protein ArsB"
                     /protein_id="HEM2272742.1"
                     /translation="FFGISFSQYALIMWIPTLFSLVASILILYFYFRKALPKKYDMRV
                     IREPASAIKDKKMFRVSWGILIILVAGYFLSSFLDIPVSFIALLVAVIFLLVSAKSHA
                     VSTKAILKGAPWNIVFFSVGMYVVVYGLQNVGITKLLSEAITYVAHFGLFAGTVGMGF
                     IAAILSSVMNNLPTVMINALAIDHTSFTGVMKEALVYANVIGSDLGPKITPIGSLATL
                     LWLHVLAQKGIKISWGSYFKIGIVITIPVLFITLVGLYFSLLIWN"
BASE COUNT          703 a          390 c          353 g          542 t
ORIGIN      
        1 atctaaacgc caacaagata tatatgaatt tataaaatca gaagtaaaag aaaaaggtta
       61 tccaccttcc gtccgcgaaa ttggtgaagc agttggcctt gcttccagct ctactgttca
      121 tggacatctt gctcgccttg aaggtaaagg cttaattaga cgggacccaa caaagcctcg
      181 tgcgattgaa atattatctt tagaagacga agcagagaca cccaatgttg taaatattcc
      241 tattatcggg aaagtaactg ctggaatgcc catcactgca attgagaaca ttgatgaata
      301 tttcccacta ccagaataca tggcagctgg cgaaaccaat gtcttcatgt tagaaatcga
      361 cggcgaaagt atgattaatg ccggaatcct tgatggtgac aaagtaatcg ttagacaaca
      421 aagttctgca atcaatggcg aaatcgttgt agcgatgaca gatgaaaatg aagctacatg
      481 taaacgattc tacaaagaag ctaatcattt tagattacaa cccgaaaacg atgctttgga
      541 acctatcctt ttaaacaacg taacgattct aggaaaagta atcggacttt atcgagatat
      601 tcgctaattt tattcgtttg aacaggtggt tgagaacatg atttattttg aaactgaacg
      661 gcttattgca agagattatt tagcaagcga ttatcttcct tttagtcaaa tgaatgcaga
      721 tgagcaagta atgaaatact tcccagccag attaactcaa aacgaaagta atgcatttct
      781 tgataggatt caagaagaat taaagtcact tggatatggt ctctttgcta ttgaagttaa
      841 atcgactggc gaattcatcg gttttactgg atttcatgag gctacttttg aagctacatt
      901 cactccatgc acggagatag gttggcgatt aaaacatagc gcttggaacc aaggctatgc
      961 caccgaagcc gcacttggcg cgttagcatt tgctgaagaa atcaacacta ttaacgaaat
     1021 atacagtttt accgccgcac tcaataaacc ttcagaaaat gtcatgaaaa aaatccattt
     1081 aacaaaaata gctacttttg aacatcccgc tttagtaaat ggcgatccac taaagcccca
     1141 tgttctttat aagaaggcat aataaaaccc cctgtacatt ctggtacagg gggttttaat
     1201 tccaaataag cagtgaaaaa tatagtccga cgagcgttat gaataaaact ggaatagtaa
     1261 tcacaatgcc aattttgaaa taagagcccc agcttatctt tatccctttc tgcgctagaa
     1321 catgtagcca aagtaaagtt gctagcgagc caattggtgt tattttcgga cctaaatcag
     1381 aaccaatgac atttgcatag actaacgctt ctttcatcac gcctgtaaat gacgtatgat
     1441 cgattgcaag tgcatttatc attactgttg gcaaattatt catgacagaa gacagtattg
     1501 cagcaataaa tcccattcca actgttcccg caaataaacc aaagtgcgca acatatgtaa
     1561 ttgcttctga taataatttt gtgataccga cattttgcaa accatataca actacataca
     1621 taccaaccga gaaaaacaca atattccaag gtgctccttt taaaatagct tttgtcgaga
     1681 ccgcatgact ttttgcactg actaacaaaa agataacagc aactagcaag gcaataaatg
     1741 acactggaat atctaaaaaa ctactcaaaa aatagcctgc tacaaggatg ataagtattc
     1801 cccaagaaac acgaaacatc tttttatctt taattgcaga agctggctct cgaatcactc
     1861 gcatatcata ttttttaggt aatgctttcc gaaaataaaa atataagatt aaaatactcg
     1921 caactaaaga gaaaagcgtt ggaatccaca taataagcgc atactgcgaa aaactaatac
     1981 cgaaaaaa
//
LOCUS       DASDXX010000287         1984 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.289, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000287 DASDXX010000000
VERSION     DASDXX010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.289"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..186)
                     /locus_tag="U0280_002824"
     CDS             complement(<1..186)
                     /locus_tag="U0280_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272743.1"
                     /translation="MERIGRDKCKNNNYNDLFLRKSQLEGTMYVEFKYSSAEKGFWNE
                     DSYYINGDIFEYLLDDFE"
     gene            complement(521..1111)
                     /locus_tag="U0280_002825"
                     /pseudo
     CDS             complement(521..1111)
                     /locus_tag="U0280_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738130.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1434..>1984)
                     /locus_tag="U0280_002826"
     CDS             complement(1434..>1984)
                     /locus_tag="U0280_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272744.1"
                     /translation="KFSYDAWISDPKNTHFFVRAFFLKWYLQIDNFDIESYEEQDEKL
                     RYMYSYGEQELLDIPEVKWIMGYCLSLNPECFMGEEDYDDLRLKGKKYLREASLANPE
                     DVFLKDSYYASGGKSVKEFVKWESENREQLANYLQANFNYDSLFSDYFKEMVTMYISG
                     KIQEKGILERLFSKLKKKDKGN"
BASE COUNT          558 a          447 c          237 g          742 t
ORIGIN      
        1 ttcaaaatca tcaagtaaat attcaaaaat atcaccatta atataatagg aatcttcatt
       61 ccaaaatcct ttttcagcgg aactatattt aaattctaca tacatcgttc cttccaattg
      121 gctttttctt aaaaacaagt cattataatt attgtttttg catttatccc tacctattct
      181 ttccataagt aattatcttc cctcctcttg tataatatcc aaaatatttc ccattcttaa
      241 ttttatatcc ttttccaact ttaaaattag ctttagttct tgattttcta tttttccgtt
      301 tgagtttgac agcttctttg gtgtactgcg acttatttat attacttccc tttttcacca
      361 catgtttatt atagtgataa tttaggcttg ctctactgga attaaaagtt ccctttgacc
      421 actttcgttc tctgttccat tttttagttt ttatataggc tttctttata aaacgatagg
      481 ctttcttacc acctttaaac ttacctcctc caaccgcacc ttttgctgca gcccatcctg
      541 cactcttcca actttttgtt ttcttatacg ctttatatcc atcataagct gcaaatccag
      601 cattaattgc tagccaaacc caatgcccat caggatccac atatctcact ggattattat
      661 tcgcataatt atacccattc atcgtctgcg ggtcgtcttc atcgcctggg tctggatcgt
      721 aagcggtaaa caccccttgc ttaggttcgt aataacgcgc catcaagtaa tattgttcaa
      781 tttccttgtc atacgtatat cccgcataac catacggatt ggctttggct tcttccgtag
      841 aggcattgtt tttcagcaca tttccccaag catcatacgc atattctgcg acaattttac
      901 ctgcttcatc cgtgagtgca attacgtcgc catgcgcatt atagtgataa taaagggttt
      961 tgccgttcat cttcatcgct aaacgaacat tatcatccga ataaacatac tgacgaacta
     1021 cttttccatc accatcagtt tcatacagaa catcaatact atcgccatca taatgataat
     1081 tcgtcgtcac accatcgact gttttcgaca agcggcgatt atcatcgtac gtataggctt
     1141 actctcgcct tttttcgtga tgctgcttaa acgcatgata tgtattattt acatctctta
     1201 cttttagaat aagccctccc tataaaaatg gagggctcat tttctgttta tttttcatta
     1261 aaacttgttc tactctcaca tctaaaagac taacatctat caatgtttca gtgaatgcat
     1321 attttttaat tggaatatat ttcctaatca aggtctttta tacctattcc cagttatcct
     1381 atacctaact tactgtctta aaaaacgata ttacactttt tcttgtataa aacttaatta
     1441 cctttatctt tctttttcag cttagaaaaa agcctttcta aaatgccttt ttcctgtatt
     1501 tttccactta tatacatcgt aaccatttcc ttaaaataat ctgagaaaag ggagtcataa
     1561 ttaaagtttg cttgcagata atttgccagt tgttctctgt tttcactttc ccatttcaca
     1621 aattctttta cactctttcc tccagaagca taataagagt cttttaaaaa tacatcttct
     1681 ggattagcta atgaagcttc gcgaagatac ttctttcctt ttaaccgtaa atcatcgtaa
     1741 tcctcttctc ccataaaaca ttcaggatta agtgagaggc aatagcccat aatccacttt
     1801 acttctggaa tatcaagtag ttcctgctcc ccataactat acatatatct taatttttca
     1861 tcttgttctt cataactctc aatatcaaag ttatcaattt gtaagtacca ctttaagaaa
     1921 aacgctctta caaagaagtg agtattcttc ggatctgaaa tccaagcatc atagctgaat
     1981 ttca
//
LOCUS       DASDXX010000288         1978 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.290, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000288 DASDXX010000000
VERSION     DASDXX010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.290"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1878
                     /locus_tag="U0280_002827"
     CDS             <1..1878
                     /locus_tag="U0280_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2272745.1"
                     /translation="LDTNRVFVKYKTKPKDNWFFSQWVNNKAIVSDNGADEQIYETKE
                     FAFLQNEVIKVAGNIDNVYGNKVNWNMELLNISPERTLSNPVITNRLEQGNTGAQFIK
                     NSFQVINTKTNEPINEENYDIIFEGNTFTIQFKNYTAMAPIKVSYSTISLLSGPISNE
                     TTVEAEDFSNVPMFFKKRNAAVSPVFTVGSGSGIATIGTIKITKVDEDDTTKKLEGAK
                     FQLYTLDGEKSGQEIKTNSEGEILLDGIQSGKYKLVETEAPEGYNISDEYKEGKEITV
                     NSSGEELLLTIKNAMKKGKVILTKKDSASDEVLADAEFELQNAAGSKLKEKLTTAASG
                     NIEITDLAPGDYKLIETKAPAGYQLDATPVHFTIDFNQSEAAKVSKTNTAKTGTVVLT
                     KKDSATNTELADATFELRNEDGALVRENLVTDDNGEISVADLAPGDYKLIETKAPTGY
                     QLDAAPVHFTIDFNQTEAANVTKTNKKKIGTIIVKFIDVEGNQLNDEEMHTGNVDEEY
                     NVKAKEIVGYTLVKDSANKKGMYKETSQEITFVYEKKAMPIIVEPTEPSKPTEQLTES
                     ATVAEPKPIKQNFKTTNKSTNNKRKLPSTGDEFPYTMLFIGLFVSVAGVFFLKKPKQI
                     K"
BASE COUNT          799 a          327 c          364 g          488 t
ORIGIN      
        1 ttagatacta atcgtgtatt tgttaaatat aaaacaaaac caaaagataa ttggttcttc
       61 tcacagtggg taaacaataa agctatcgtc tcagataatg gagcagatga acaaatatac
      121 gagacgaaag agtttgcttt tttgcaaaat gaagttatta aggtagctgg aaacatagat
      181 aatgtctatg gaaataaagt gaactggaat atggaactct tgaatatttc tccagaaaga
      241 acactgtcta atccggttat taccaatcga ttggaacaag gaaatacggg cgctcagttt
      301 attaaaaata gttttcaggt aattaataca aaaacgaacg aaccgataaa cgaagaaaat
      361 tatgatatta tttttgaagg aaataccttt accattcaat ttaaaaacta tactgcaatg
      421 gcgccaataa aagtaagcta cagcacaata agtttacttt caggaccaat ttctaacgaa
      481 acgacggtgg aagcagaaga ttttagtaat gttccaatgt tctttaaaaa aagaaatgca
      541 gcagtatcac cagtctttac agtgggatct ggatcaggga ttgcaacgat tggcacgatt
      601 aaaatcacaa aagtggatga agacgatact acgaagaaat tagaaggcgc aaaatttcag
      661 ctttacacac tagatggtga aaaatctgga caagaaataa aaactaattc agaaggtgaa
      721 attctactag atggtataca atctgggaag tataaattag ttgaaacaga agctccagaa
      781 ggatacaaca ttagcgatga atacaaagaa ggaaaagaaa ttactgttaa ttcatctggt
      841 gaggaacttc ttttaaccat caaaaatgct atgaaaaaag gcaaggttat tttaacgaaa
      901 aaggacagtg catcagatga agtattagca gatgccgagt ttgaattaca aaacgccgct
      961 gggtcaaaac taaaagaaaa actaacaaca gctgcgagcg gtaatataga aataaccgat
     1021 ttagcaccag gcgactataa gttaattgaa accaaagccc cagctggtta ccaattagac
     1081 gcgaccccgg ttcatttcac aattgatttt aaccagtcag aagcagcgaa agtaagcaaa
     1141 accaacacag caaaaacagg cacggtagtg ctaacgaaaa aagatagcgc aacaaatacc
     1201 gagctagctg acgccacatt tgagttgcga aacgaggacg gagcattagt ccgcgagaat
     1261 ctcgtaacag atgataatgg agaaattagc gtagctgatt tggcaccagg cgactataaa
     1321 ttaattgaaa ccaaagcccc aactggttac caattagacg cggcaccagt tcatttcacg
     1381 attgatttta accaaacaga agcggctaat gtaaccaaaa ccaacaagaa aaaaattggt
     1441 acaattatag ttaaatttat agatgtagag ggcaatcaat taaatgatga ggaaatgcat
     1501 actggaaatg ttgatgaaga atacaatgtg aaagctaaag aaatcgttgg ctacacatta
     1561 gttaaagatt ccgctaacaa aaaaggtatg tataaagaaa cttcacaaga aataaccttt
     1621 gtttatgaga aaaaggcaat gccgattatt gtggaaccta ctgaaccatc aaaaccaaca
     1681 gaacagctaa cagaatcagc tacagtagca gagccaaaac ctataaaaca aaactttaaa
     1741 acaacaaaca aatcaacaaa taataagaga aaacttcctt ctacaggaga tgagttccct
     1801 tatacaatgc tattcattgg attgtttgtt agtgttgctg gagtattctt cttaaaaaaa
     1861 cctaaacaaa taaaataaaa aaaagctatc ctaagaaatt taggatagct ttttcattta
     1921 aatccaagca tcttcttcat ttttcgttaa aagcatttga atacctcgaa caatatta
//
LOCUS       DASDXX010000289         1917 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.291, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000289 DASDXX010000000
VERSION     DASDXX010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.291"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1917
                     /locus_tag="U0280_002828"
     CDS             <1..>1917
                     /locus_tag="U0280_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2272746.1"
                     /translation="LDGNEAFITETERVLSKNREDITLADLETIQELDIYGDASSIPD
                     KISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNNFQEFPMILLQMPSLSSIE
                     INRNKIKEIPSEITTLSPHLGSLDVRYNELITLPDNIFTTEWESKLSLLTTGNQLVSD
                     IPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEVPLNTDLKTLTPDKTKL
                     GLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIKSTLSTNSNPFAKVRVP
                     ITVTPPVKGGDVTVQYKDTTGVVLADSITLSGNVGENYTTTAKTIDGYSLTTTPTNAN
                     GTFSTNPQTVTYTYKKDPIAQPVTVNYIDTDGKTIAPTETLSGNVGENYTTTAKTIDG
                     YSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTDGKTIAPSETLTGNISE
                     NYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAETAQPITVNYRNSTGQKI
                     AKSEVLTGNIGESYSTQPKTIAGYTLTTIPPNAKGTFTTNAQTVTYMYTPIAISALPV
                     TVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTLIKTPTNANGVFSAEAQSIDY
                     IYRKNKPVVIVNPPI"
BASE COUNT          728 a          385 c          292 g          512 t
ORIGIN      
        1 ttagatggta atgaagcctt tatcactgaa acagaaagag tcttgtcaaa aaatcgtgaa
       61 gatattacac tcgcagattt agaaacaata caagaattag atatttatgg tgatgcttca
      121 tcaatacccg acaaaatttc tgattataag aatctcaata ctttacttgc ccttaatgga
      181 acgatttcag aaattccaac tagtatcact aaactaacaa aactaacaag aatcaacgta
      241 gacaataata attttcaaga atttccgatg attctattac agatgccttc tctaagttct
      301 attgagataa atagaaataa aattaaagag attccttcag aaataaccac attatcccct
      361 catttaggat cgctggatgt acgctataat gagctaatta cgcttccgga taatatcttc
      421 actactgagt gggaaagtaa gctctcatta ctaactacag gaaatcaatt agtttctgac
      481 attcctgctg attggttaga taattttaat caagcagata acatgctcga attttacaac
      541 aatccaccaa atgattatca tcaaaaacaa gaccagctaa cgtatagtgg agcaagaatt
      601 gaagtcccat taaatacaga tctaaaaaca ttaactcctg ataaaacaaa actgggctta
      661 aaatcaggca gaacgttatt tgaacaacat gaatttatgt attatgatga cgggacctct
      721 aataacattc taactaacgg tgttgctact gccacaggaa atggctatat aacaatcaaa
      781 agtactttat caaccaattc caaccctttt gcaaaagtac gagttcctat cacagtaacg
      841 cccccagtaa aaggaggaga tgttaccgtt caatataaag acacaactgg agtagtgtta
      901 gcagactcca ttactttatc cggaaatgtg ggcgaaaatt atacgacaac agctaaaaca
      961 attgacggct attctttaac aactacacca accaatgcta atggaacttt ttcaacaaac
     1021 ccacaaactg tcacatatac ttataaaaaa gaccctatag cgcaaccagt tactgttaat
     1081 tatattgata cagatggaaa aacaattgct cccactgaaa cattaagcgg aaatgtgggc
     1141 gaaaattata cgacaactgc taaaacaatt gacggctatt ctttaacaac tacacctgcc
     1201 aatgctaatg gaactttttc aacaaaccca caaactgtca catatactta cacaaaagat
     1261 cctatagcgc aaccagttac tgttaattat atcgatacag atggaaaaac aattgctcct
     1321 tctgaaacct taaccggaaa tattagtgaa aactatacga caacagctaa aacaattgac
     1381 ggctattctt taacaactac acctgccaat gccaagggga ctttttcgac agaacctcaa
     1441 ataattaatt atatctatgc gaaaaacgct gagacagccc aacctattac cgttaattat
     1501 agaaactcta caggtcaaaa aatcgcgaaa agtgaggttt taactggtaa tatcggagaa
     1561 tcttactcaa ctcaaccgaa aacaattgct ggttacacac tcacaacaat acctccaaat
     1621 gcaaaaggaa cctttacaac aaatgcgcaa acagtaactt atatgtatac gccgattgct
     1681 atttccgcct taccagtgac agtgaactat ttagatgaaa atggtaaaga aattgctgac
     1741 tctgtagttc taaatggtcg tgtgggagag gcttataata cactagctaa agaaatagat
     1801 ggctacacgt tgataaaaac tcctacaaat gctaatggtg tgttttcggc ggaagcacaa
     1861 tcaatcgatt atatctaccg taaaaataaa ccagtagtaa tagtaaatcc accaatc
//
LOCUS       DASDXX010000290         1893 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.292, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000290 DASDXX010000000
VERSION     DASDXX010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.292"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            120..851
                     /locus_tag="U0280_002829"
     CDS             120..851
                     /locus_tag="U0280_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2272747.1"
                     /translation="MKLTVFGHWGGYPLANEGTSSYLLEEAGFKLLIDVGASAVSIMQ
                     NYIDPDDIDAAIISHYHPDHVADVGILQHIRLLSQKKEKPPVLPIYGHKEDERGYSYL
                     EMANVTKAIEYKPDDRLEIGPFKVTFLKTIHPVPCYAMRIEAGDKVFVYTADSAYQDS
                     FIPFSEGADLLVTDTNFFHDLAGKTKVHMASTEVAKIAKEANVKSLLLSHLPEVGDLE
                     VLKQEAAAIYKGEIALASKGFTKTF"
     gene            875..1870
                     /gene="lplA1"
                     /locus_tag="U0280_002830"
     CDS             875..1870
                     /gene="lplA1"
                     /locus_tag="U0280_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate protein ligase LplA1"
                     /protein_id="HEM2272748.1"
                     /translation="MYFIDNNNEKDPRINLAVEEFILTELNLDEPVLLFYINKPSIII
                     GRNQNTVEEIDTEYVEKNDVIVVRRLSGGGAVYHDEGNLNFSFITEDDGESFHNFAKF
                     TQPIVEALKRLGVNAELKGRNDLLIDGLKVSGNAQFATKGKMFSHGTLMYDLNLDNVA
                     ASLKPRKDKIESKGIKSVRSRVANISDFMDQEMTTEEFRDLLLLYIFNVEKVEDVKEY
                     KLTAADWEKIHEISAKRYGNWDWNYGKSPKFDLTRTKRFPVGAVDVRLNVQKGIITDI
                     KIFGDFFGVKNVADIEEKLVNTTYKREALDEALADIDVKEYFGNITKDEFLDLLY"
BASE COUNT          660 a          288 c          398 g          547 t
ORIGIN      
        1 taaataatga gaaaagacag cggattttct aagctgtctt tttttctgga taatttctcc
       61 ttttattata aatgttgtat catataaagg aggtttattt tgagaaagga agtgcagtga
      121 tgaaactaac cgtttttgga cattggggtg gctatccatt agcaaatgaa ggcacatcta
      181 gttatttgct ggaagaagct ggatttaagc tattaattga tgttggcgca agtgctgttt
      241 ctattatgca aaactatatt gatcctgatg atattgatgc ggcaataatt tctcattacc
      301 atccagacca tgtagcagat gtagggattt tgcagcacat tcgcctatta tcacaaaaaa
      361 aggaaaaacc gccagtattg ccgatatatg gacataaaga agatgaacgc ggttattctt
      421 atttagaaat ggcaaatgta acaaaagcaa tcgaatataa accagatgat agacttgaaa
      481 tcggaccgtt taaagtaact ttcttaaaga cgatccatcc ggtaccttgc tatgctatga
      541 gaatagaagc aggtgacaaa gttttcgtat acaccgcaga tagcgcttat caagatagtt
      601 ttatcccttt ttcagagggg gcagatttat tagtaacaga caccaatttt ttccatgacc
      661 tagccggaaa aacaaaagtg catatggcta gcacggaagt tgcaaaaatt gccaaagaag
      721 ccaatgtgaa atcattactc ctcagtcatt tacccgaagt tggcgattta gaagttctaa
      781 aacaagaagc agcggctatt tacaaaggag aaattgcact tgcttcaaaa ggattcacga
      841 aaacatttta atatagaaga aaaggggtag gagtatgtac tttatagata ataataatga
      901 gaaagatcct cgtattaatt tagcggtgga ggaatttatt ttaactgaat taaatctaga
      961 tgagcctgtg ctgttatttt atattaataa gccatcgatt atcattggac gcaaccaaaa
     1021 tacagtagaa gaaattgata cagagtatgt ggagaaaaat gatgtcatcg tagtgcgcag
     1081 actttctggc ggcggcgctg tttatcatga tgaaggaaac ttaaatttca gttttatcac
     1141 ggaagatgat ggcgagtctt tccataattt tgcgaaattc acgcaaccaa tcgtggaagc
     1201 gctgaaacgt ttaggcgtca atgcggaact aaaagggcgt aacgacttat tgattgatgg
     1261 tttaaaagtt tctggaaatg cgcaatttgc aacgaaaggg aaaatgttct cacacgggac
     1321 attaatgtat gatttgaacc tagataatgt tgctgcatcg ctaaaaccac gtaaagataa
     1381 aatcgaatca aaaggaatta agtctgttcg tagtcgtgta gcgaatattt ctgatttcat
     1441 ggatcaagaa atgacaacgg aagagtttcg cgatttgcta ttactttata ttttcaatgt
     1501 tgaaaaagta gaagacgtaa aagaatataa attaactgct gcagattggg aaaaaatcca
     1561 cgaaatctct gctaaacgtt atggtaattg ggactggaac tacggaaaat ctccaaaatt
     1621 cgatttaaca cgaacaaaac gttttccagt aggagcagtc gatgttcgct taaatgtaca
     1681 aaaagggatt attacagata tcaagatttt cggagacttc ttcggcgtaa aaaatgtggc
     1741 ggatattgag gagaaattag tcaatacaac ttataagcgc gaagcattgg acgaggcttt
     1801 agcagatata gacgtaaaag aatactttgg taacattacg aaagatgaat ttttagattt
     1861 actttattaa aaaaatggaa agtacgcatc ccg
//
LOCUS       DASDXX010000291         1811 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.293, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000291 DASDXX010000000
VERSION     DASDXX010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.293"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            121..1041
                     /gene="mogR"
                     /locus_tag="U0280_002831"
     CDS             121..1041
                     /gene="mogR"
                     /locus_tag="U0280_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility genes transcriptional repressor MogR"
                     /protein_id="HEM2272749.1"
                     /translation="MPKSEIRKLLQEIKKQVDNPGNSSTTEIKKMASEAGIDEKTAEE
                     IYHLLTEFYQAVEEHGGIEKYMHSNISWLKIELELLSACYQIAILEDMKVLDISEMLS
                     LNDLRIFPKTPSQLQNTYYKLKKELIQVEDIPKNKPGRKRKTQKNTKKEKTNIFGKVV
                     PAEFKAPTSIKEQISYDKSREKNLVDLLSGVKSNVQLLSENQGEENNVYDLLKSIYSL
                     SSLAVQKEELDKKYQDLQTKCQELEQENSYLKQQNETMTDSFHTLVLQVADFAYASDL
                     DQIQALPLFSQQLVVTLNQLGVFKENYKQM"
     gene            1060..1269
                     /locus_tag="U0280_002832"
     CDS             1060..1269
                     /locus_tag="U0280_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272750.1"
                     /translation="MYIEIYTVNGESIRLDDDAKINNISIHELSKADLKNLFNEKCIE
                     LTKYDLTYFINTNQVNWFLVSEGIH"
     gene            complement(1308..1736)
                     /locus_tag="U0280_002833"
     CDS             complement(1308..1736)
                     /locus_tag="U0280_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HEM2272751.1"
                     /translation="MGFLEAYKSFWRNYVNFSGRAPRSAYWYVVLWNVIIFVILYALA
                     FIFGISAIMEAAMGGTGMAGGGGAIVLVIILWLYLLAALLPTISLMVRRLHDSGKSGF
                     FVLLSLIPFAGGIIMLIFMCLESDGPNQYGDGDIDSKFDF"
BASE COUNT          711 a          364 c          266 g          470 t
ORIGIN      
        1 gttcttcata cccaatcctt ttgacctact cgcgttccct ttacacaact aacatatatt
       61 gttattataa aaataaacag aaaatcaata atactatagg atagagaggt atgtgattgt
      121 atgcctaaat cagaaataag aaaattactt caagaaatca aaaaacaagt agataatccg
      181 gggaattcat ctacaactga aattaaaaaa atggcttcag aagctggcat tgacgaaaaa
      241 actgccgaag aaatctacca tttactcact gaattttatc aagccgttga agaacacggt
      301 ggaatcgaaa aatatatgca ttccaatatt agttggttaa aaatcgaatt agaactactt
      361 tccgcatgtt accaaattgc tattttagaa gatatgaagg ttcttgatat ttctgaaatg
      421 ctcagcctaa atgatttgcg gatttttcca aagactccaa gccaactaca aaatacttac
      481 tacaaactaa aaaaagagct tatccaagta gaagatattc cgaaaaacaa gcctgggaga
      541 aaaagaaaaa cacaaaaaaa tacaaaaaaa gaaaaaacca atattttcgg caaagttgtg
      601 ccagctgaat tcaaagcacc aacgtccatc aaagaacaaa tcagctacga caaatcacgc
      661 gaaaaaaact tggttgattt actttccggc gttaaaagca atgttcaact tttaagcgaa
      721 aaccaaggtg aagaaaacaa cgtatatgac ttactaaaaa gcatttactc actctcttcc
      781 cttgctgttc aaaaagaaga actcgacaaa aaataccaag acttacaaac aaaatgccaa
      841 gaattggaac aggaaaattc ctatttaaaa caacaaaacg aaaccatgac agattcgttc
      901 catacacttg tgttacaagt agctgatttc gcttatgcca gtgatttaga ccaaatccaa
      961 gcactgccac ttttcagcca gcaactcgtt gtaacactga atcaacttgg tgtattcaaa
     1021 gaaaattata aacaaatgta atttagaagg ggtggcacga tgtatatcga aatttatacc
     1081 gtaaatgggg aatctattcg ccttgacgac gacgcaaaaa tcaacaacat cagcatccac
     1141 gaattatcaa aagcagactt gaaaaacctt tttaacgaaa aatgtatcga gttaacgaaa
     1201 tacgacttaa cgtattttat taataccaac caagtgaatt ggttccttgt aagcgaagga
     1261 atccattaaa aaaacgagct aggattatct cttagctcgt tttctattta aaaatcaaat
     1321 ttactatcta tatccccatc accatattgg tttggtccat cactttcaag acacataaaa
     1381 attaacataa taattccgcc agcaaatgga ataaggctta aaaggacgaa aaatccactt
     1441 ttgccagaat catgtaagcg tcgaaccatt aagctgattg ttggaagtaa agccgctagc
     1501 aagtatagcc ataaaatgat taccagaacg attgcaccgc caccgccagc cattcccgta
     1561 ccacccatag ctgcttccat aatagctgaa ataccaaaaa taaaagctaa agcataaagt
     1621 attacaaaaa taataacatt ccaaagtact acataccaat acgccgatct cggggctctg
     1681 ccactaaagt taacgtaatt tctccaaaat gatttgtaag cttctaaaaa tcccatattt
     1741 cctcctatgt aaataaattt caccgtatct ataaggatat atgtagccat cccattacac
     1801 aagctcttac a
//
LOCUS       DASDXX010000292         1807 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.294, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000292 DASDXX010000000
VERSION     DASDXX010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.294"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1807
                     /locus_tag="U0280_002834"
     CDS             <1..>1807
                     /locus_tag="U0280_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272752.1"
                     /translation="LNKKRVIVGVLLLLLSLISISYYSETFKLTLSWLLFAVVLTVLY
                     FRQEKNFQFQWSTLITSLIISLFWMASSFNGGPYGGNFVFNSIILAGTFLVITIFVLL
                     LLLEMRTEYKARPNRKVKWPFFALFTSIPFVVWMISFLAYYPAKMTFDSYYQWGMAHG
                     IRQYSQWHPLLHTLWIETTSAIYDSPSSYIFSQIIVVSLIVGFAIYTLVKMGAHIWIG
                     VCISIGYAIYPAAMFYSATAWKDFPFAAFILLFTVLILKIVQSNGMWLKNWWHLIAFV
                     LVAFVCINLRNNGMMIIIVSLLCLLIFMKNFRLIITGILVGTLGLNFLFGLVMTNGLN
                     AQPNPLNQALAIPSQQIGATFYNDGNFTPELKEYFTSILPEENWKKDYNPYTVDPIKH
                     DTKYNSSVIEDDFGLYIKNWFKLLTANFGTYVGAYLDQTAVIWQFYSPENYKVFFDTS
                     ANIQDTRYDVRAFAKFFPEGLSEEEINKLGYEVYQNEYKNATGKDAVSYNEYKRRIDD
                     STNPLISISKAPSLKKITDSIYAKTTNEWQNYLLKGAIPLVLLIIAIAAVCLQRPKKK
                     LLIFAPVVMALITIAIAMPATDFRYSYSFIFTVPIV"
BASE COUNT          568 a          307 c          300 g          632 t
ORIGIN      
        1 gttaaataaa aaaagagtta tagttggggt tttgctacta ttactaagtt taatttctat
       61 tagctattat tcagaaacct ttaaactaac tttaagctgg ttgttatttg cagtagtttt
      121 aacggttctt tattttagac aagagaaaaa ctttcaattt caatggtcaa cattgataac
      181 ctcactaata attagtttat tttggatggc ttcatcattc aatggtggac catatggcgg
      241 gaattttgtt tttaatagta ttattttagc aggaactttt cttgtaatca ctatctttgt
      301 tttactttta ttacttgaaa tgcgaacgga atataaagca agaccgaatc gcaaagtaaa
      361 atggccattt ttcgcactat ttacgagtat tccattcgtg gtctggatga tttcatttct
      421 agcctattat ccagcaaaaa tgacatttga ctcctattac caatggggaa tggctcacgg
      481 tattcgccaa tatagtcagt ggcatccgct tttacacact ttgtggatag aaacaacaag
      541 tgcgatttac gactcacctt cgagttacat tttttctcaa ataattgttg tttcattaat
      601 cgttggcttt gctatttata ctcttgtaaa aatgggcgcg catatttgga ttggtgtttg
      661 tatttcaatc ggctatgcca tttaccctgc agcaatgttt tattctgcaa cagcatggaa
      721 agattttcca tttgcagcct ttatattact tttcaccgtt ttaattttaa aaatagtaca
      781 atctaatgga atgtggctga aaaattggtg gcaccttatc gcttttgttt tagtagcttt
      841 tgtttgtata aatttacgaa acaatggaat gatgattatc atcgtatcgc ttctgtgctt
      901 gcttattttc atgaaaaact ttcgtcttat tattaccggt attcttgttg gaaccttggg
      961 actgaatttt ttatttggtc tggttatgac aaacgggctt aatgcgcaac ctaatccatt
     1021 aaaccaagcg ctagcaattc cttcccaaca aattggggct actttttaca atgatggaaa
     1081 ctttactcct gaattaaaag agtatttcac ttccatatta cctgaagaaa attggaaaaa
     1141 agattacaac ccttatactg tagacccaat taagcatgat accaaataca attcatccgt
     1201 cattgaagat gattttggac tatacattaa aaattggttc aaactcttaa cggctaattt
     1261 cggtacttat gtaggggctt atttagatca aacagcagtc atttggcaat tctattctcc
     1321 agaaaattat aaagtattct ttgatacttc agcgaatatt caagatacaa gatatgatgt
     1381 gagagcattc gccaaattct tcccagaagg tttatcggaa gaagagatta ataaattagg
     1441 atatgaagtc tatcaaaatg aatacaaaaa tgcaactgga aaagatgctg ttagctacaa
     1501 tgagtataag agacggattg atgactctac taatccactt atttcaatat ctaaagctcc
     1561 aagtctgaag aaaataacag atagcattta tgcaaaaaca acaaatgagt ggcaaaatta
     1621 tttattaaaa ggagccattc cattagtatt gctcataata gcaattgctg ccgtctgcct
     1681 ccaacgtcct aaaaagaaac ttcttatttt tgcacctgta gtaatggcac ttattactat
     1741 agcaatcgca atgccagcaa cagactttag atattcttat agttttattt tcaccgtgcc
     1801 tattgtc
//
LOCUS       DASDXX010000293         1794 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.295, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000293 DASDXX010000000
VERSION     DASDXX010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.295"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..760)
                     /locus_tag="U0280_002835"
     CDS             complement(<1..760)
                     /locus_tag="U0280_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272753.1"
                     /translation="MRVTQSKLNGFYVFGSTLMLIVIWILLAYQNESMNQVFKAVGIN
                     FRIELQKVNNIFFVAVTMIIFPTILFWSLRNKIWEGKRALKRYFLILNLRKEMIDANY
                     RDERHVTERVVQMPTIKVEFDNKEMTSGKLIVRDSLEFHDRLAKATFTPSLKGFKVED
                     FYLSDDGDWWIYNFYSVNSQIQAVFDSLEEYLNWSNETTNKFQLRIDNRLSFDLKHTL
                     LVGATRSGKTYGLIGLLLQMINKLIHYELFFADPK"
     gene            complement(835..1212)
                     /locus_tag="U0280_002836"
     CDS             complement(835..1212)
                     /locus_tag="U0280_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272754.1"
                     /translation="MARLPNQYLFVKTVVDAERLFDEKTKSYVVVELRDAYEYADGKI
                     TDNVIGKNVTLMCTRDEEDYGVTKAGKKIPNLKFKQFDIKILNGAFEVPKGTRVKMDL
                     GKLEKAVGYKTTLVNKYRLYLKI"
     gene            1463..>1794
                     /locus_tag="U0280_002837"
     CDS             1463..>1794
                     /locus_tag="U0280_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272755.1"
                     /translation="MHWIDLKFGYRFDEKKDNLISESTWRKYLDDFFNYKNNKEGTLT
                     KYTDMLRGGNRNREYHIDFIKEIIEFKKDDLIEHLNSNKKTIKNPSLEYFAEEMNLKF
                     DTQDKFIKG"
BASE COUNT          604 a          300 c          269 g          621 t
ORIGIN      
        1 tcttcgggtc tgcaaaaaac aattcgtaat gaatcaattt atttatcatt tggagcaata
       61 atccaatcaa tccataagtt tttccgcttc tagtagcacc aacaagaagt gtgtgtttta
      121 aatcgaatga tagacggtta tcgattctca attgaaattt gtttgttgtt tcatttgacc
      181 aatttaagta ttcttccaat gaatcgaaga ctgcttgaat ttgtgaattt actgaataga
      241 aattataaat ccaccaatca ccatcatccg atagatagaa atcttccact ttaaaacctt
      301 ttagtgaagg agtaaatgtt gcttttgcaa gacggtcatg aaattccaat gaatctcgta
      361 caattaattt tccagaagtc atttctttat tatcaaattc tactttgata gttggcattt
      421 gtactacacg ttcggtcaca tgtctttcat ctcgataatt tgcgtctatc atttctttcc
      481 ttaaatttaa gatcagaaaa taacgcttca gtgctctttt gccttcccag attttatttc
      541 ttaaagacca gaacaagatt gtaggaaata ttatcattgt cacagcaaca aaaaatatat
      601 tatttacttt ttgaagttct attctaaaat ttatgcccac agccttaaac acttggttca
      661 ttgactcgtt ttgatatgca agcaatatcc agataactat taacatcaat gtagaaccaa
      721 aaacgtagaa cccatttaat ttactttgtg tgactctcaa ttcacatagc tcctttttag
      781 gagaaggaca acgtcaattt ctttgacgtt gcctaaatct ctacttaata acatctaaat
      841 ctttaaatac aatcgatact tgttcaccaa agtcgttttg taaccaacag ccttttctag
      901 tttccctaaa tccattttga ctcttgtgcc ttttggtact tcaaaagccc cattcaaaat
      961 tttaatatcg aattgcttga atttgagatt gggtattttt ttgccagctt ttgttactcc
     1021 ataatcctct tcgtctctgg tacacataag tgttacattc tttccgatca cattgtcagt
     1081 tatcttgccg tcagcgtatt cgtacgcatc ccttagttca accacaacat aactttttgt
     1141 tttctcgtcg aacaatcttt cggcatccac cactgttttc acaaataaat actgatttgg
     1201 caatctagcc atctttacat caaccctttc taacctgcgc agattatcgt tattgttacg
     1261 cgtaatttta ttataatatg aagtagatag tatgttaatg gtggaagaat aaggttatta
     1321 aagaccggtt tatcgttata tcttttttgg ttatgttata ataaattaca ggaggggaga
     1381 aaaatatgag tacatatgat gaaatagatg aaaaaattca aaaaagatac aaactgaagg
     1441 atttttacca aggagagaat taatgcattg gatagatctg aagtttggtt acagatttga
     1501 tgaaaaaaaa gataatttga tttcggaatc tacatggaga aagtatttag atgatttctt
     1561 taattacaag aacaataaag aaggaacttt aaccaaatat acagatatgc ttaggggcgg
     1621 gaatagaaat agggaatatc atatcgattt tataaaggaa attattgaat tcaaaaaaga
     1681 cgatttaata gaacatctta atagtaataa aaaaacaata aagaatccta gtctggaata
     1741 tttcgccgaa gaaatgaact taaaatttga tacccaagat aaatttataa aggg
//
LOCUS       DASDXX010000294         1761 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.296, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000294 DASDXX010000000
VERSION     DASDXX010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.296"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..666)
                     /gene="lieB"
                     /locus_tag="U0280_002838"
     CDS             complement(<1..666)
                     /gene="lieB"
                     /locus_tag="U0280_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464505.1"
                     /note="ABC transporter involved in aurantimycin A
                     resistance; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux ABC transporter permease LieB"
                     /protein_id="HEM2272756.1"
                     /translation="MKAIRDTSILFGRSMRHIMRSPDTIITVAIIPIMIMLMFVYVLG
                     GAIQTGTDNYVDYLLPGIILMAIASGIAYTAVRLFTDVQKGLFQRFHSMPISRSSVLW
                     GHVLTSLVSNVISIVLIILVALLIGFRSSAGIVEWLSVAGILLLFTLALTWVAVIPGL
                     TAKSVDGASAFSYPLIFLPFISSAFVPTDTMPTAVRVFAENQPVTSIVNTIRGLLYSE
                     PIGN"
     gene            complement(663..1427)
                     /gene="lieA"
                     /locus_tag="U0280_002839"
     CDS             complement(663..1427)
                     /gene="lieA"
                     /locus_tag="U0280_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464504.1"
                     /note="ABC transporter involved in aurantimycin A
                     resistance; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux ABC transporter ATP-binding
                     protein LieA"
                     /protein_id="HEM2272757.1"
                     /translation="MKEVMIKATGLEKSFKKTEVLKGVDFEVKHGEIFALLGSNGAGK
                     TTTIQILATLLKADNGLATVSSFDVKTEPEKVRKHISLTGQFAAVDGLLTGRENILLI
                     AKLRGEKNPAQTADDLLARFGLEKAADRRADTYSGGMTRRLDIAMSLVGSPDVIFLDE
                     PTTGLDPEGRMEVWKTIKTLSDGGTTILLTTQYLDEAEQLADRIAILHGGTIIANGTL
                     DELKKLFPPAEVEYIEKQPSLEEIFLAIINGKEEVK"
     gene            complement(1625..>1761)
                     /locus_tag="U0280_002840"
     CDS             complement(1625..>1761)
                     /locus_tag="U0280_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="branched chain amino acid aminotransferase"
                     /protein_id="HEM2272758.1"
                     /translation="TKDDFHVFHSETEVGPVTKRLFDELCGIQFGDVEAPEGWIYKVK
                     "
BASE COUNT          544 a          389 c          283 g          545 t
ORIGIN      
        1 attcccgatt ggttctgaat acagcaatcc acgtatcgta ttaacaattg aggtcacggg
       61 ctgattttct gcaaaaacac gaactgcagt tggcatcgta tctgttggaa caaaagctga
      121 actaatgaat ggtaaaaata tgagcggata agaaaatgcg cttgctccat ctactgattt
      181 ggcagttaaa ccaggaatca cagcaaccca tgtgagcgct aatgtgaata atagcaaaat
      241 accggctaca gaaagccatt ccactattcc tgccgatgaa cgaaaaccaa taagaagagc
      301 aactaaaata atgagcacaa tagagataac attagaaact aaagaagtta aaacatgacc
      361 ccataatacc gaagaacgac taattggcat agaatgaaat cgttgaaata atcctttttg
      421 tacatctgta aataatcgta ccgccgtata agcaatccca cttgcgattg ccatcaaaat
      481 aattcccggc aacaaataat ctacgtaatt gtctgtcccc gtttgaattg cgcctccaag
      541 cacatacaca aacatcaaca taatcataat tggaataatg gcaactgtaa taatcgtatc
      601 aggactacgc ataatatgac gcatggagcg accaaataat atgcttgtat cacgaattgc
      661 tttcatttta cttcctcctt cccattaata attgctaaga aaatttcttc tagtgatggt
      721 tgtttttcga tatattctac ttcagctggc gggaataatt ttttaagttc atccaaggtt
      781 ccatttgcaa taatggttcc accgtgaagg atagcgattc tatccgcaag ctgctctgct
      841 tcatctaaat attgcgttgt tagtaatata gttgttcctc catcagaaag tgttttaatc
      901 gttttccaga cttccattcg cccttccgga tcaagtccag ttgttggctc atcaagaaaa
      961 atcacatctg gggagccaac gagactcatc gcaatatcca gtcgtcttgt cattccacct
     1021 gaataagtgt ctgcacgccg atccgcagct ttttcaagtc caaaacgtgc caataagtca
     1081 tctgccgttt gtgctggatt cttttcacca cgtaacttag caatgagtaa aatattttct
     1141 cgtcctgtta aaagtccatc tactgccgca aattgtccgg taagactaat atgtttccgt
     1201 actttttccg gctccgtttt cacatcaaaa ctagaaactg tagcaagtcc attatccgct
     1261 tttaaaagag tcgctaaaat ttggatggtt gtcgtcttgc ccgcaccgtt tgagcctagt
     1321 aatgcaaaaa tttcgccatg ttttacttca aaatccacac ctttcaagac ttctgttttc
     1381 ttaaatgact tttccaaacc cgtggcttta atcatcactt ctttcatttg aatacaacct
     1441 tctttccatt ttttattaaa actccactac tcagtaatac aggtattctg tatcacttat
     1501 tactactaca tagtaacacc gagttgctat catgtcaata aaaaagtcat tttcttttta
     1561 ttaatcagaa atgacttttg attttgtaca taaaaaaacc gtccgctgaa cggacggttt
     1621 aaaattattt cactttataa atccaacctt ctggagcttc tacatctcca aattgaatgc
     1681 cacatagttc atcgaataaa cgcttcgtta ctggccccac ttctgtttca ctatggaata
     1741 catggaaatc atctttggtt t
//
LOCUS       DASDXX010000295         1761 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.297, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000295 DASDXX010000000
VERSION     DASDXX010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.297"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            246..863
                     /locus_tag="U0280_002841"
     CDS             246..863
                     /locus_tag="U0280_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272759.1"
                     /translation="MLMSLSVLPLATYASETENTPTESYDGENFIATQIGNTLVIEDK
                     KTGETVKIEMNDEENGVITSDDGTIENVHRDEEGNVYVDNELELEAPPLDIEDGINIA
                     TQPRLLKASKWIYVQTTKYNTTTQGNMRSLALGILSFMPITGPIFGIVAIIDAARSMG
                     AKTLYVRVKQYRTSGYQFYKYDSYYYANASLTKLVKKTSQTKRMW"
     gene            1173..1517
                     /locus_tag="U0280_002842"
     CDS             1173..1517
                     /locus_tag="U0280_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272760.1"
                     /translation="MQKDTYNGIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVE
                     LDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNK
                     GIQFLNNFKTME"
BASE COUNT          676 a          217 c          324 g          544 t
ORIGIN      
        1 taaaggagat ggataaaatg aaaaaaatta ttattggtgt gtttttcggg attcttattc
       61 tagttattgt tggtctatat gtttcatatg tctatatgaa tcaaagcttt atatgggttg
      121 cagggatact tttgttgtta ggtacattat tcaattggtt tttgtataat aagtatctgt
      181 ctaaaaaaac ataataaggg agcgagataa ccatgaaaaa aatcattata gtactagcat
      241 cagttatgtt aatgtctctt tcggttctgc cactggcaac ttatgcatca gaaacagaga
      301 acactcctac tgaatcatat gacggagaaa attttatagc aactcaaata ggtaatactt
      361 tagttattga agataagaag acgggcgaaa ctgtaaaaat tgaaatgaat gacgaagaaa
      421 acggggtaat tacatctgat gatggtacaa tagaaaatgt acatagggat gaagaaggta
      481 acgtttatgt agataatgag cttgaactag aagcacctcc tttagacatt gaagatggca
      541 taaatatcgc cactcagcct cggttactga aagcttctaa atggatatat gttcaaacaa
      601 ctaagtataa tacaaccaca caaggcaata tgagaagtct tgcattgggg attctatcat
      661 tcatgccaat tacaggtcca atctttggaa tagttgcaat tattgatgct gctcgatcaa
      721 tgggggcgaa aacattatat gttagagtga aacaatatcg tactagtggt tatcaatttt
      781 ataagtatga ttcttattat tatgccaatg ctagtttaac taagctagtt aaaaaaacat
      841 cccagactaa acgaatgtgg tagggcatta ttaaaaaaac tagtataaac taaaagacct
      901 tgctcaaaga ttagcaaggt cttagactgg ggaagaaaaa gtcttctctt tttctgtttt
      961 atggaaatgt tattccgtat tttagacgag tttcttctat ggaagaatac acaattttag
     1021 ggaatgtgtc tgatatggca gctagattct ctgatagtga ataagatttg aaattaccta
     1081 atgtttacta cagtgaaaag caaattagag aagaagtgac tcgttcttta gaagctttag
     1141 cttgaatcat aaaatttgag aggaacgtaa ttatgcaaaa agatacatat aacggcattc
     1201 gattgagtgt aatccaattg atagattcaa aaaaagaaaa tctgaaggag aataatataa
     1261 aattaacaat tataaagaat gaaaaagacg gttatgttgt agaactggat aatgacaaat
     1321 gcatggcaga aattgtagtt gaagaaccta cttatgcccc atatcgctat atttcatttg
     1381 aagtagtttc tttgatggat ggaaaagtta aaattatcta ttcttggtat gatgatgaaa
     1441 caagtcaatg gagcgatatt gagaaagaat taaataaagg aattcaattt ctaaataatt
     1501 ttaaaacgat ggagtaataa aagaacatta ttgctgtact taaattgcta taaggaaata
     1561 taatcacaaa cagtaaaaat taacctataa ctataaaaat gataaaaaag acatattata
     1621 aataagagta tatgtttgta taaaatgtgc aaacgtacac aatgaattta ataagaaata
     1681 ccaaaagtga actcgtatat tcaaataaaa gtgtttaatc tgtgtaaatt aactttagac
     1741 tatcaagtaa gcagtatcgc a
//
LOCUS       DASDXX010000296         1748 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.298, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000296 DASDXX010000000
VERSION     DASDXX010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.298"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            100..>1748
                     /locus_tag="U0280_002843"
     CDS             100..>1748
                     /locus_tag="U0280_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2272761.1"
                     /translation="MKKSKLFLTLGLTLLLSLVLVACGGGSDSKSDKKGSDSGKASGE
                     QVLNLTESALIPSADSTKADDQVGLNVVNQTNEGLYALDKDGIPAIAGAAEEPKVSDD
                     KTVYTIKLREDAKWSNGDPVTANDYVYSWRRAVDPNTAATYSYLFDAIKNGGDIVAGK
                     KKPEELGIKAVDDYTLEVTLSKPTAYINSLFAFPTFFPLNEKFVTEKGEKYAQNSDNM
                     LFNGPFELKDWTGTNKKWTYVKNDKYWDKDKVKLKQINVQVVQDSGTGLNLYNTDKVD
                     RTVLSADYAAQNKNNKDYVTVNDSSTFYIKFNQKRAGKDTVFANKNIRKAIALAIDKQ
                     SYTDTVLKNGSKPANNLVPEGFTFDPGNKEDYTKESGKHLEYDVKEAQKAWKAGLKEL
                     GVNEITVEFTSDDTENARKSSEFIQDQLQKNLDGLTVKLKNVPFKVRLQNDQNQDYDF
                     SMSGWGPDYQDPSTFLDLFVTDGAQNRMSYSNKDYDKILNDASVTYAADDQKRWDEMV
                     KAEKILLTDDVAIQPLYQRSTAYLQKDYIKNLQKNPFGPDYT"
BASE COUNT          662 a          318 c          306 g          462 t
ORIGIN      
        1 tcatttatct tgtaaaaata atttacaaag ccagaattct tagagtataa taggtatcga
       61 aacaattttt cagaaaaata aaaaagggag gtctacttag tgaaaaaatc taaattattt
      121 cttacacttg gattaacact attactaagc ttagtcttgg tagcatgcgg aggcggatca
      181 gattccaaat ccgacaaaaa aggctcagat tcaggaaaag cttcaggaga gcaagtactt
      241 aacttgacag aaagcgcact aattccttct gcagacagca caaaagcgga tgaccaagtt
      301 ggtttgaacg ttgtaaacca aacaaacgaa ggtctatatg cgcttgacaa agatggtatt
      361 cctgccattg ccggtgctgc tgaagagcca aaagttagcg atgacaaaac agtttataca
      421 atcaaacttc gtgaagatgc aaaatggtca aacggagacc ctgtaactgc aaatgactat
      481 gtttactcat ggcgtcgtgc agttgaccct aacactgctg caacatattc ttacctattt
      541 gatgcaatca aaaacggtgg agatatcgta gctggcaaga aaaaacctga agaattagga
      601 attaaagcag tagatgatta tactttagaa gttactctat ctaaaccaac tgcttacatt
      661 aactcactat tcgcattccc gactttcttc ccacttaacg aaaaattcgt tacggaaaaa
      721 ggcgaaaaat atgcacaaaa tagtgataac atgttattca atggaccttt cgagttgaaa
      781 gactggactg gaacaaacaa aaaatggact tacgtaaaaa atgataaata ttgggataaa
      841 gataaagtta agttgaaaca aatcaacgta caagttgttc aagactccgg tactggactt
      901 aacttataca acactgacaa agttgaccgt actgtattga gtgcagacta tgctgctcaa
      961 aacaaaaaca ataaagacta tgtaacagtg aatgattctt ctactttcta cattaaattt
     1021 aaccaaaaac gtgctggcaa agatacagta tttgctaaca aaaacatccg taaagctata
     1081 gctcttgcga ttgacaaaca atcgtatact gatacagttc ttaaaaacgg atctaaacct
     1141 gcaaacaacc ttgtaccaga aggtttcact tttgacccag gtaacaaaga agattataca
     1201 aaagaatctg gcaaacattt agaatatgat gtaaaagaag ctcaaaaagc ttggaaagct
     1261 ggtttgaaag aattaggagt taacgaaatt acagttgaat tcactagtga tgacactgaa
     1321 aatgcgagaa aatcttctga attcattcaa gaccaactac aaaagaactt agacggtctt
     1381 acagttaaac ttaaaaacgt accatttaaa gttcgtttac aaaatgacca aaaccaagat
     1441 tacgatttct ctatgagcgg ctggggtcct gactatcaag atccatccac tttcttagat
     1501 ctattcgtaa ctgatggtgc acaaaacaga atgagttatt ctaacaaaga ctacgacaag
     1561 attttaaatg atgcttctgt aacttatgca gctgacgatc aaaaacgttg ggatgaaatg
     1621 gttaaagcag aaaaaattct tcttacggat gatgtagcta ttcaaccact ttatcaacgt
     1681 tctactgcat acctacaaaa agactacatt aaaaacttgc aaaaaaatcc atttggtcca
     1741 gattacac
//
LOCUS       DASDXX010000297         1732 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.299, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000297 DASDXX010000000
VERSION     DASDXX010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.299"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            168..1717
                     /locus_tag="U0280_002844"
     rRNA            168..1717
                     /locus_tag="U0280_002844"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          469 a          377 c          515 g          371 t
ORIGIN      
        1 aagaagacga aaagcaatga gacgtaaagt ctcactggta atcgcagggc agaaaacaga
       61 aagctgtttt caacaaaaca aactagtaat ttaattgcta gcgaagtcaa tttgacgcaa
      121 ggaatcttat tcacggtgtt gaataagtat tcaaattcaa tttatatttt aaagagagtt
      181 tgatcctggc tcaggacgaa cgctggcggc gtgcctaata catgcaagtc gaacgaacgg
      241 aggaagagct tgctcttcca aagttagtgg cggacgggtg agtaacacgt gggcaacctg
      301 cctgtaagtt ggggataact ccgggaaacc ggggctaata ccgaatgata aagtgtggcg
      361 catgccacgc ttttgaaaga tggtttcggc tatcgcttac agatgggccc gcggtgcatt
      421 agctagttgg tagggtaatg gcctaccaag gcaacgatgc atagccgacc tgagagggtg
      481 atcggccaca ctgggactga gacacggccc agactcctac gggaggcagc agtagggaat
      541 cttccgcaat ggacgaaagt ctgacggagc aacgccgcgt gtatgaagaa ggttttcgga
      601 tcgtaaagta ctgttgttag agaagaacaa ggataagagt aactgcttgt cccttgacgg
      661 tatctaacca gaaagccacg gctaactacg tgccagcagc cgcggtaata cgtaggtggc
      721 aagcgttgtc cggatttatt gggcgtaaag cgcgcgcagg cggtctttta agtctgatgt
      781 gaaagccccc ggcttaaccg gggagggtca ttggaaactg gaagactgga gtgcagaaga
      841 ggagagtgga attccacgtg tagcggtgaa atgcgtagat atgtggagga acaccagtgg
      901 cgaaggcgac tctctggtct gtaactgacg ctgaggcgcg aaagcgtggg gagcaaacag
      961 gattagatac cctggtagtc cacgccgtaa acgatgagtg ctaagtgtta gggggtttcc
     1021 gccccttagt gctgcagcta acgcattaag cactccgcct ggggagtacg accgcaaggt
     1081 tgaaactcaa aggaattgac gggggcccgc acaagcggtg gagcatgtgg tttaattcga
     1141 agcaacgcga agaaccttac caggtcttga catcctttga ccactctgga gacagagctt
     1201 tcccttcggg gacaaagtga caggtggtgc atggttgtcg tcagctcgtg tcgtgagatg
     1261 ttgggttaag tcccgcaacg agcgcaaccc ttgattttag ttgccagcat ttagttgggc
     1321 actctaaagt gactgccggt gcaagccgga ggaaggtggg gatgacgtca aatcatcatg
     1381 ccccttatga cctgggctac acacgtgcta caatggatag tacaaagggt cgcgaagccg
     1441 cgaggtggag ctaatcccat aaaactattc tcagttcgga ttgtaggctg caactcgcct
     1501 acatgaagcc ggaatcgcta gtaatcgtgg atcagcatgc cacggtgaat acgttcccgg
     1561 gccttgtaca caccgcccgt cacaccacga gagtttgtaa cacccgaagt cggtagggta
     1621 acctttatgg agccagccgc cgaaggtggg acagataatt ggggtgaagt cgtaacaagg
     1681 tagccgtatc ggaaggtgcg gctggatcac ctcctttcta aggaaaagga aa
//
LOCUS       DASDXX010000298         1727 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.300, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000298 DASDXX010000000
VERSION     DASDXX010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.300"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(17..937)
                     /locus_tag="U0280_002845"
     CDS             complement(17..937)
                     /locus_tag="U0280_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEM2272762.1"
                     /translation="MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAM
                     ANIPIYTIAGTKGGIGIMPTYKVDKKLLTADDLTAIIASLDGMEQLLSSAETKKTLQK
                     MKNMLDHSSEPPKSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQT
                     IRKTEPYHLLFRNRSWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGA
                     PPDRPMFLMHEVSLIVDKIAREQIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLL
                     QLGTHVTIQNRDDFYDNFVDYLKEIQGKYI"
     gene            1040..1459
                     /locus_tag="U0280_002846"
     CDS             1040..1459
                     /locus_tag="U0280_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="effector binding domain-containing protein"
                     /protein_id="HEM2272763.1"
                     /translation="MAFEIVELKKETFTGNKVEIPEFDPQKGFGPMSEIKESAYTKFA
                     KNEKDYVGINASLDDLQYYIVASANSENGDTTFDIPAGKYAKFVTSETDRPALDGFIG
                     AAYGEVSQSDTVGIAGSFNLEDLREAEFTLYIPVVSK"
BASE COUNT          534 a          309 c          371 g          513 t
ORIGIN      
        1 attagcagag ccatttttag atatattttc cttggatttc ctttaagtag tcaacaaaat
       61 tatcgtaaaa gtcatcacgg ttttgaatgg ttacatgcgt tccaagttgg agcaaaaagc
      121 ggtacccagc ctcgtgatca ggaagcgtca cttttgccaa aaagtgtgcg tcatcttgct
      181 gcgagatttc gactagatca aagcgctcga tgatttgctc gcgggcaatt ttatcgacaa
      241 ttaagctgac ttcatgcatc aaaaacatcg gtctgtcggg tggggcgcca aacggtttta
      301 cactaaaagg gcgagcttca aaagtttctt ctagcgtttt tagttcaaca atccgcgaca
      361 ttttaaatgt tcgaaaatcg ctgcgttcca aactgtaacc ttgcaaatac caagaacgat
      421 tcctaaacag gaggtgataa ggctcagttt tacgaatggt ttggttgccc gttcgatcaa
      481 tatagctgag ttctacgagt tgatgttttt taatcgctaa atataaactt tcgactttag
      541 cgtttaattc gtttttcatg gacaaattgg agaaatcgag cgaaatggaa cttttaggcg
      601 gttcgcttga atggtcgagc atgtttttca ttttttggag ggttttcttg gtttcggcgg
      661 aagaaagcaa ctgttccatt ccgtccaaac tagcaataat cgcggttaaa tcatccgctg
      721 tgagaagctt tttatcgact ttgtaggtag gcataatacc aatgccaccc tttgttccgg
      781 caattgtgta aatcgggata ttcgccatcg cgagtgtgtc aatgtcgcgg aaaatagtac
      841 gtttggaaac ctcgaacatt gtagccattt cagaagcact gactagctcg cgttggagaa
      901 gcagcatgat aattccgatg agtcgctcga ttttcatttt tttctccttt gtttttggaa
      961 tgatgacaga cagttgtcat cattcgtgtg ttatagttac atcatatcaa agttaagtaa
     1021 ctttttggag ggaaatatta tggcatttga aattgttgaa ttaaaaaaag aaacatttac
     1081 tggaaataaa gtagaaatcc ctgaatttga tccacaaaaa ggctttggcc caatgagcga
     1141 aattaaagaa tcagcctaca caaaatttgc aaaaaacgaa aaagactacg ttggcattaa
     1201 cgcaagtctt gacgacctac aatattacat cgtagctagt gcaaacagtg aaaacggcga
     1261 cacaactttc gacattccag caggcaaata cgcaaaattc gtaacaagcg aaacagaccg
     1321 cccagctcta gacggcttca tcggcgcagc atacggcgag gttagtcaaa gcgatacggt
     1381 tggcattgcg ggatcgttta atttggagga tcttagagaa gctgagttta cgctttatat
     1441 tccggttgtt agtaagtaaa ttgaggagat ctctttcgga tgaaaggggt ctttttttat
     1501 gttaataatt aaaaaaatca aaaatgcact aataagttct gcatttgagt atgttattgc
     1561 acagaggttc acaaaacgct cacaaaaggg atgtagttgc gatgctataa tagaagagtg
     1621 gaaaactaca aattactgaa tgatgatctt caccttaaaa ataggagtga cgatagattg
     1681 aaaaaactag attttaactg caatgatgct aattataatg cagaatt
//
LOCUS       DASDXX010000299         1726 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.301, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000299 DASDXX010000000
VERSION     DASDXX010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.301"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(132..791)
                     /gene="phoU"
                     /locus_tag="U0280_002847"
     CDS             complement(132..791)
                     /gene="phoU"
                     /locus_tag="U0280_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEM2272764.1"
                     /translation="MVVRKIFTEQLNDLHQHLMEMGMLANEAIFKAVKSLVHRDTELA
                     KQVVAEDKAINNMELSLEQRSFELIALQQPVGMDLRKIVTVLKTSSDLERIGDHAVSI
                     AKTAILIGESKVLKPIPEIPEMGEIVKAMLQDVLKAYLAEDEVAARKIAERDNEVDKL
                     HKIVYQKCIHFMQEEPEHIEDVSQLLLVSQYIERIGDYVTNVCEWIVYLKSGEIEDLN
                     R"
     gene            complement(804..1583)
                     /gene="pstB"
                     /locus_tag="U0280_002848"
     CDS             complement(804..1583)
                     /gene="pstB"
                     /locus_tag="U0280_002848"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM2272765.1"
                     /translation="MTTETAEKVEYIIETKDVDLFYGSKQALQKIALNIKKNQVTALI
                     GPSGCGKSTFLRTLNRMNDLIPNVKTTGEIHIGGENVQDPKIDMVNLRKKVGMVFQQA
                     NPFPFSIYDNVAYGPRMHGIKDKKVLDEIVERSLRQAALWEEVHDRLDRSAIGMSGGQ
                     QQRLCIARVLAVKPDVILMDEPTSALDPISTAKVEDLILELKKDYTIVIVTHNMQQAS
                     RISDETAFFLNGRIVEFADTTSIFTNPAEKETEDYISGRFG"
     gene            complement(1598..>1726)
                     /locus_tag="U0280_002849"
     CDS             complement(1598..>1726)
                     /locus_tag="U0280_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466019.1"
                     /note="ATP-binding protein; PstABCS is an ATP dependent
                     phosphate uptake system which is responsible for inorganic
                     phosphate uptake during phosphate starvation; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM2272766.1"
                     /translation="ARVSDYTSFFYLGEVVEFSGTSELFTNPQQKQTEDYISGNFG"
BASE COUNT          491 a          368 c          296 g          571 t
ORIGIN      
        1 atacaatttt tttatcatta agaaaggaga gctggggaat aaaagggttt taaatattga
       61 gaagttattt aaaccgccta acacaccaaa aaaagcccga ttaacctgtg gaaaggaaaa
      121 tcgggctttt tttatctgtt taaatcttca atttcgccac tcttcaagta aacaatccat
      181 tcgcacacat ttgttacata atcaccaata cgttcgatat actgggaaac taagagtagt
      241 tgtgaaacat cttctatatg ctctggctct tcttgcataa aatgaataca tttttgataa
      301 acgattttat gaagcttatc gacttcatta tcgcgctcag caattttgcg agcagcaact
      361 tcatcttctg caaggtaagc ttttaatacg tcttgtagca ttgcttttac aatttcgccc
      421 atttctggta tttcgggaat cggctttaaa accttacttt caccaattaa aatagccgtt
      481 ttggcaatac ttactgcgtg gtcaccaatc cgttctaaat ccgaacttgt ttttagtact
      541 gtgacgattt ttcgcaaatc cataccaact ggctgttgca aagcgatcaa ctcaaaagag
      601 cgttgttcca gtgaaagctc catgttattg attgctttat cttctgcaac tacttgttta
      661 gcaagctcgg tatcgcggtg tacaagtgac ttgactgctt taaaaatcgc ttcattcgca
      721 agcattccca tttccattag atgttggtgc aagtcgttta actgttccgt aaaaattttt
      781 ctgactacca taataacact cctttatcca aatcttcctg aaatatagtc ttctgtttcc
      841 ttttctgctg ggttggtaaa aatactcgtc gtatccgcga actccacgat gcgaccattt
      901 aagaaaaagg cagtttcatc ggaaatccgg gatgcttgtt gcatattatg cgtcacaata
      961 acaatcgtat agtctttctt taattctaaa atcaaatctt ctacttttgc tgtcgaaatt
     1021 gggtccagtg cagaagttgg ctcatccatc aaaataacat ccggtttaac agctagaact
     1081 cgtgcgatgc aaagccgctg ttgttgtcca cctgacatcc caatcgccga acgatccagc
     1141 ctatcatgca cttcttccca aagagccgct tgacgcaaac ttctttctac aatctcatca
     1201 agtacttttt tgtcttttat accatgcatc cgcggaccat aagcgacatt atcataaatc
     1261 gaaaacggga atgggtttgc ttgttggaaa accataccca ctttttttcg taagttaacc
     1321 atgtcaattt taggatcttg tacattttca ccgccaatat ggatttctcc agtcgttttc
     1381 acattgggaa ttaaatcatt cattcggtta agcgtacgca gaaaagttga tttcccacac
     1441 cccgacggac caattagagc ggtcacttga tttttcttaa tgtttaaagc gattttttgt
     1501 agtgcttgtt tggaaccata aaataaatct acatcttttg tttcaatgat atactctact
     1561 ttttcagcag tttcagttgt cataaaaaag ctcctttcta gccaaagtta ccagaaatat
     1621 agtcttcagt ttgtttttgt tgcggattcg tgaaaagttc ggatgttcct gagaattcca
     1681 cgacttcccc cagatagaag aaagaagtgt agtcggatac acgagc
//
LOCUS       DASDXX010000300         1715 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.302, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000300 DASDXX010000000
VERSION     DASDXX010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.302"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..780)
                     /locus_tag="U0280_002850"
     CDS             complement(<1..780)
                     /locus_tag="U0280_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2272767.1"
                     /translation="MKILVFGGTRFFGKKLVERLVSEGHEVTIGTRGKTEDNFGDTVK
                     RVILNRESRDALFQLAKEDWDVIYDNICFSPKEALYAVDAFKGKVKRYIYTSSLSVYS
                     QKGRALVEADFNPEHYEIVIGDKEDFDYGEGKRLAEAVFFQKASFPVVAVRFPIVLGL
                     DDYTKRLHFHINHIKNHQEIGISNGQAEIGFITSDEAAHFLEWVGVESDLTGPVNATS
                     NGTYALNGFIKMLEEKIGKLALVEEVTDDVDDSPFGIEKTYY"
     gene            complement(850..1527)
                     /gene="virR"
                     /locus_tag="U0280_002851"
     CDS             complement(850..1527)
                     /gene="virR"
                     /locus_tag="U0280_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator VirR"
                     /protein_id="HEM2272768.1"
                     /translation="MVKVYIVEDDEVIRDTIRKHLSKWGFEIGVVEDFNNILQEFLAF
                     EPQLVILDVNLPFFDGFYWCNQIREVSNVPIIFLSSRNSRMDQIMGMNMGADYYIEKP
                     VDLDVLMARINALLRRTYSYADLEEANVMEHNNVFLHIDTNTLTHLEDKIELTKNEFL
                     ILYELMKQKGSIVSRDEIMRALWEDESFVDDNTLTVNVVRIRKKLAEIGLSEFIKTKK
                     GQGYMIE"
BASE COUNT          542 a          362 c          234 g          577 t
ORIGIN      
        1 ataataggtt ttttcaatgc caaacggaga atcatcgacg tcatccgtca cctcttcaac
       61 tagtgctaat ttcccgattt tttcttcaag cattttgatg aaaccattta atgcgtatgt
      121 gccattggag gtagcgttta ccggtcctgt cagatccgat tccacaccaa cccactctaa
      181 aaaatgcgcc gcttcatcag aagtaataaa gccaatctca gcttgtccat tactaatccc
      241 aatttcttgg tggtttttaa tatgattaat atgaaagtga aggcgttttg tgtaatcgtc
      301 aagtccaagc acgattggaa aacgaactgc aactactgga aaagaagctt tttggaaaaa
      361 tacggcttca gcaagtcgtt tcccttcacc gtaatcaaaa tcttctttat ctccaataac
      421 aatttcataa tgctctggat taaagtcagc ttcaactaaa gctcgacctt tttgactata
      481 aacagagagt gatgatgtat atatgtatcg ttttaccttg cctttaaatg catctacggc
      541 ataaagtgct tctttcggag agaaacatat attatcgtaa ataacatccc agtcttcttt
      601 tgctaattgg aataaagcat ctcttgattc tcgatttaaa ataacccgtt tgacagtatc
      661 accaaaatta tcttctgttt tgccccttgt cccaatggtg acctcatgtc cttctgaaac
      721 aagtctttcc actaatttct tgccaaaaaa acgagtacca ccgaatacta aaattttcat
      781 ttagactcct cctccattta cgaaaaacag gaagttcgcg ttttttagcg ctatcttcct
      841 gttttttcgt cattcaatca tatatccttg gccttttttc gttttgataa attcgctcaa
      901 accaatttct gctagttttt tacgaatacg aacaacatta actgtcaatg tattatcatc
      961 aacaaaactt tcatcttccc aaagtgcgcg cataatttca tcacgactta caatgctacc
     1021 tttttgtttc attaattcat ataaaatcaa aaattcattt ttcgttagct caattttatc
     1081 ttctaaatgt gtaagtgtgt tcgtatcaat gtgtaggaaa acattattat gctccatcac
     1141 attggcttct tctaaatctg cgtaagaata tgtccgcctt aatagagcat ttatccgcgc
     1201 cattaaaaca tccagatcaa ctggtttttc aatataatag tctgcaccca tattcatgcc
     1261 cattatttgg tccattcgcg aattacgtga tgataaaaag ataatgggta cattcgaaac
     1321 ttctcgaatt tgattacacc aataaaagcc atcaaagaaa ggaagattaa catctaaaat
     1381 aactaattga ggttcgaaag ctaaaaactc ttgtaaaata ttgttaaaat cctctactac
     1441 accaatctca aatccccatt tacttaaatg ttttcggatt gtatcacgaa ttacttcatc
     1501 atcttctacg atatatacct ttaccatttc tagtgcctcc ctcggtggaa ctctcttctc
     1561 attttagctg aaataaccac aaaagccaat tactttttat tggccatcac aattttggta
     1621 aaagaattga tacacaaaaa gtaataagct gcataacaaa gaatataaat acctgtacca
     1681 attaataccg gatattttat attatccatt aaatt
//
LOCUS       DASDXX010000301         1682 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.303, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000301 DASDXX010000000
VERSION     DASDXX010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.303"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..896
                     /locus_tag="U0280_002852"
     CDS             <1..896
                     /locus_tag="U0280_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272769.1"
                     /translation="LITLFIIASVTFVLMKFLPGTPYRNQEKLSDEQIHMMNEKYGLN
                     DSIPVQYLNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAMAFGVIFGIL
                     LGVIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAGWGTFADT
                     ILPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAVKHAIRNALIPL
                     ITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTILFAVMLVFVI
                     LVVDILYGLIDPRIRVSGGRK"
     gene            896..>1682
                     /locus_tag="U0280_002853"
     CDS             896..>1682
                     /locus_tag="U0280_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2272770.1"
                     /translation="MAEHKIAKERFQPAHILDAEAEKINRPSLTFLQDSWLRIRKNKA
                     ALVSLIVLALVIIMAIVGPYLSQNLGPKHDINRQITENASLPPKVQGFENMPFWNGHQ
                     SIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLIIG
                     VAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILEPGIVSIIIAIAMTSWI
                     TMARVVRGQVLKLKNQEFVMASMTLGESTPKILIKHLIPNISGI"
BASE COUNT          486 a          276 c          344 g          576 t
ORIGIN      
        1 tgcttataac gttattcatc attgcttcgg ttacgtttgt tcttatgaaa ttcttacctg
       61 gtacgcctta ccgtaatcag gagaaactat ctgacgaaca aattcacatg atgaatgaaa
      121 aatatggact aaatgattca attccagtcc aatacttaaa ttatatgaca ggtttggtaa
      181 aaggtgactt aggtgtttcc ttccaacttg ataatagacc agtgtctgag attttaagtg
      241 cactgattgg tccatctgtc caattagcac tcgaggcaat ggcttttggt gttatttttg
      301 gtattttact aggggtaata gcggccatgt atcagaatag gtggccggat tatacgagta
      361 catttatagc aatattaggt aagtcagttc catctttcgt atttgcgact gttttacaat
      421 actggcttgg agcaaaactt caaattttcc cagtagcagg ttggggtacg tttgcagata
      481 ctattctgcc agcattcgca cttgcgatgt tcccgcttgc aacagcagct cgtttcatga
      541 gaacagagtt aattgatgta tttgcatctg attatgttct acttgccaaa gcgaaaggga
      601 atagtagaac ggaagtagca gttaaacatg cgattcgtaa tgcacttatt cctttaatta
      661 cagttttagg accattatca gttgcactga tgactggttc ccttgttatt gaaaatattt
      721 atagtattcc tggtatcggt agccaattcg tttcttctat tcaaacaaat gactatccag
      781 ttattatggg aactacaatt ttatttgctg tcatgttggt atttgttatc ttggtagtgg
      841 atattcttta cggattgatt gatcctcgaa tccgtgtgtc tggaggtaga aaataatggc
      901 agaacataaa attgcaaaag aaagatttca gccagcacac attctggatg cagaagcaga
      961 gaaaattaat cgtccaagtt taactttctt gcaagattct tggcttcgta ttcgtaaaaa
     1021 taaagcggct ttagtttctc taattgtatt agcacttgtt attatcatgg caattgttgg
     1081 gccttattta tcacaaaatc taggaccaaa acatgatatt aaccgacaaa tcactgaaaa
     1141 tgcgagtctt cctccaaaag ttcaaggctt tgaaaatatg cctttctgga atggtcatca
     1201 atctattggt ggagaagatg ttgatattta taaacaaaat aatattaaag agggtactta
     1261 ctactggtta ggtagtgata cgcttggacg tgaccaattt gctcgtattt gggctggtac
     1321 acgtgtatct cttattattg ctgttgtagc agcgctttgt gaccttataa ttggggttgc
     1381 ttacggtttg atttctggtt atgttggagg ccgtgtagat aatttcatgc aacgtgtttt
     1441 agaagttatt ggtgcaattc caaacttagt tgtggttatt ttaatgatgt taatactcga
     1501 accaggtatt gtatctatta tcatagcaat cgcaatgacg agttggataa cgatggcccg
     1561 ggtagtcagg ggacaagttt taaaacttaa aaaccaagaa tttgttatgg cttccatgac
     1621 tttaggggaa tctactccta aaattcttat aaaacattta ataccaaata tttctgggat
     1681 ta
//
LOCUS       DASDXX010000302         1672 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.304, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000302 DASDXX010000000
VERSION     DASDXX010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.304"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..407)
                     /locus_tag="U0280_002854"
     CDS             complement(<1..407)
                     /locus_tag="U0280_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272771.1"
                     /translation="MKKNLRMLALGFLISAVVLLVYNQFFSTQTKADETKAASTKAGS
                     DENSSTWKNKYEKLLAQQEVDKATEAEAKKKAEEDAKKKAEEAKKVKSYTLKISKGDP
                     SSKAGDELQANGIIKSASDFDKYLRDNNYEKYIR"
     gene            complement(435..791)
                     /locus_tag="U0280_002855"
     CDS             complement(435..791)
                     /locus_tag="U0280_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272772.1"
                     /translation="MTTVIIILLIAAIALFVISFLQKGDNKQLEKELEDVAAQWMQEN
                     FELKQRISELEKAMKMDSPSIEAEQVPDSPKVRELMKKQVITLYTSGIVTSEIAEQSS
                     LPKEEVEKIIEEYLKH"
     gene            989..1138
                     /gene="rpmG"
                     /locus_tag="U0280_002856"
     CDS             989..1138
                     /gene="rpmG"
                     /locus_tag="U0280_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM2272773.1"
                     /translation="MRVNITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTL
                     HRETK"
     gene            1194..>1672
                     /locus_tag="U0280_002857"
     CDS             1194..>1672
                     /locus_tag="U0280_002857"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEM2272774.1"
                     /translation="MEDKRLIREKILRNLNSLDRVEHRERSIRLAEKLFLLPEWENAK
                     VVGITLARHPEIETEAIILQAKKEGKTILIPKTYYPSKKMEFKKMDSIHPLIKSKFGI
                     LEPNELAETVDKKVIDLLIVPGVAFNKDHYRIGFGGGFYDRFLTDFQGHTVSLYLYE"
BASE COUNT          547 a          286 c          274 g          565 t
ORIGIN      
        1 cgaatgtact tttcataatt attatctcgt aaatatttat caaaatctga agcactttta
       61 ataataccat ttgcttgaag ttcgtcacca gctttagaag aaggatctcc tttagaaatc
      121 tttaaagtat aactttttac tttttttgct tcttctgctt tctttttagc atcttcttca
      181 gcctttttct ttgcttcagc ttccgttgct ttgtccactt cttgctgagc taataatttt
      241 tcgtatttat ttttccatgt gcttgaattt tcatcagaac cagcttttgt tgatgcggct
      301 tttgtttcat ctgctttggt ctgtgtggag aaaaactggt tatacaccag taagacaaca
      361 gcagatatta agaaacctag cgccaacatc cgtaagtttt tcttcacaga taggctcctc
      421 ctttaaaatt taaatcaatg ttttaaatat tcttcaatga ttttttccac ttcttcttta
      481 ggtaaagatg actgttcagc aatttctgaa gttacgattc cagaagtata aagtgtaatc
      541 acttgttttt tcattaattc acgaactttc gggctatcag gaacttgctc agcttcaatg
      601 cttgggctat ccattttcat tgctttttct agttcagaga tacgttgttt tagttcaaag
      661 ttttcttgca tccactgagc agcaacatct tccagttctt tttctaattg tttattgtca
      721 cccttttgta gaaatgaaat aacaaacagc gcaatagcag caattagtaa gataattatg
      781 actgtggtca tgggttttat acacacctct cttccataaa ctctactact agttatagca
      841 taatttacct caaaacacca tccgaaataa ggttttgtaa agaaaataaa aagaaaatgc
      901 atagagtcct tgcaacaact gattaaaaat gatattatta tacaggttta gtaaataaat
      961 tcgtcagtcg gagttggagg gaaaaataat gcgcgttaat attactttag aatgcactga
     1021 atgcggtgat cgtaattaca tcactactaa aaataagcgt gaaaatccgg aacgtattga
     1081 attaaaaaaa tattgtccaa gattacgccg tgtaacttta caccgcgaaa ctaagtaagc
     1141 agcaggatct ccattctgtt gcttttttta ttaacaaaaa gggggaagcc aaaatggaag
     1201 acaaacgact gatacgcgag aaaatcttac ggaatttgaa tagccttgat agagtagaac
     1261 atcgcgaacg ttctattaga ttagcggaaa aactattttt attaccagaa tgggaaaatg
     1321 caaaggttgt tggtatcaca ttagcaagac accctgaaat cgaaacagaa gcaatcatcc
     1381 tacaagcaaa aaaagaaggg aaaaccattt taattccaaa aacatattat cctagcaaaa
     1441 aaatggagtt taaaaagatg gattcgatac atcctttaat aaaatctaag tttggtattt
     1501 tagaaccaaa tgaattagca gaaacagttg ataaaaaagt aattgactta ctaattgttc
     1561 ctggagttgc ctttaataaa gatcattata gaatcggttt tggcggagga ttttacgata
     1621 gatttttaac ggattttcaa ggacatacag tgtccttgta cctttatgaa ca
//
LOCUS       DASDXX010000303         1649 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.305, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000303 DASDXX010000000
VERSION     DASDXX010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.305"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..260
                     /locus_tag="U0280_002858"
     CDS             <1..260
                     /locus_tag="U0280_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEM2272775.1"
                     /translation="ENTRQIQMESGQLYNQFLPDIREKVVNHVMGIVPIVARLIRNPE
                     TGQRGFLLTENNGNFAKNQLDNREFALQEDLFQIGDVDVKA"
     gene            324..1580
                     /locus_tag="U0280_002859"
     CDS             324..1580
                     /locus_tag="U0280_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM2272776.1"
                     /translation="MRCCSLWLGAGKSVILSEIIRMTTRNKNHVLFLVHRKELIDQIR
                     NTLIMNEVDMEFVKLGMVQTIVGRLNKTSEPSLIIIDESHHVLANSYKKIIHHFSNAK
                     VVGFTATPVRINGGGLGDINDMLIEKVNVKWLIENQFLAPYKYFAPEIVQTETLDIKR
                     TGEFDMTGLDDQFNKRMIWGDVIKHYQKLANGEQAILYASSLYQSEKMAMSFESVGIT
                     SAHIDGKTPKSIRDDIIQRFREGEIKVLCNLDLIGEGFDVPDCSTVIMLRPTQSLSLY
                     IQQSMRGMRYRTGKTAIIIDHVGNVNRFGLPDMERKWSLEPRKGSNSTKAEAPVKICK
                     ECFMTVSQTAKKCEHCGHEFKVEVKPMQVDEAAELQEITEAVFKVNYSSPSECTNMKE
                     LYEYAKEHNYKRGWAFHQGKARGFIK"
BASE COUNT          619 a          250 c          339 g          441 t
ORIGIN      
        1 gggaaaacac gcgtcaaata cagatggaaa gtgggcaact gtataatcaa tttttgcctg
       61 acattagaga aaaggtagtt aatcacgtta tgggaattgt tcctatagtc gcaagattaa
      121 taagaaatcc tgaaacaggt cagaggggtt tcttactcac agaaaacaat ggtaattttg
      181 caaaaaatca gctagataat agagagtttg ccttgcaaga agacctattc caaataggtg
      241 atgttgatgt taaagcttag agaatatcaa caagaaatta taaatgatgt aaagggggct
      301 tttttacagg gatataacag accgtgcgtt gttgctccct gtggctaggc gctggtaaat
      361 cagttatttt atcagaaata attcgcatga caacgcgcaa taaaaaccat gttcttttcc
      421 tagttcaccg aaaagagttg atagaccaaa tcagaaacac actcattatg aatgaagtgg
      481 atatggaatt tgtcaaattg ggtatggtac aaacgatagt tggacgttta aacaaaactt
      541 cggagccttc gttaatcata attgatgaaa gtcatcatgt gttagcaaat agctataaaa
      601 aaataattca tcacttttct aatgcgaaag tggtcggatt tacagcaaca ccagtgagaa
      661 taaatggggg tggtttagga gatataaacg atatgttaat cgaaaaggtt aatgtgaaat
      721 ggttaattga aaatcaattc ttagcacctt acaaatattt tgctcccgaa atcgttcaaa
      781 cagaaacatt agatatcaaa cgaactggtg aatttgacat gacaggactt gatgatcaat
      841 tcaataaaag aatgatttgg ggcgatgtca tcaaacatta tcaaaagtta gcaaacggag
      901 aacaagcaat actttatgcc tcttctcttt atcaaagcga aaaaatggca atgagttttg
      961 aatcagtagg cattacatcc gcacatattg acgggaaaac acctaaatcc attcgtgatg
     1021 acattataca acgatttcga gaaggcgaaa taaaggtgct ttgcaactta gatttaattg
     1081 gtgaaggatt cgatgttcca gactgttcta ctgtgattat gctaagacca actcaatctc
     1141 tatccctgta tattcagcaa tcaatgcgag gtatgcgata ccgaactggt aaaacagcta
     1201 ttattattga ccacgttgga aatgtcaatc gctttggttt gccagacatg gaacgaaaat
     1261 ggtccttaga acctcgtaaa ggaagtaact ccacgaaagc tgaggcacct gtgaaaattt
     1321 gcaaagagtg ttttatgaca gttagccaga cagcaaaaaa atgtgaacat tgtggacatg
     1381 aattcaaagt agaagtaaaa ccaatgcaag ttgatgaggc agcagagcta caagaaataa
     1441 cagaagcagt ttttaaagtg aattatagta gtccaagcga atgtacgaac atgaaagaat
     1501 tatatgaata tgcaaaagaa cacaattata aaagaggatg ggcattccat caaggaaaag
     1561 caagaggatt tatcaaataa aaacgaaaga aggaatttaa aaatgtttaa agtagatcat
     1621 aatgatgttt tcacaaatgg agtagaaaa
//
LOCUS       DASDXX010000304         1608 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.306, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000304 DASDXX010000000
VERSION     DASDXX010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.306"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..370)
                     /locus_tag="U0280_002860"
     CDS             complement(<1..370)
                     /locus_tag="U0280_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272777.1"
                     /translation="MHSDEEIFKETTPKALLQLLKKDYYFHDYCYQEIIPRGKEIKMN
                     NSKGFQIYLVESGYFSYCLQNEYGDSGIISFVGGEIAINLIPIIKEEPEESVLRSLTE
                     VHCWVLDPDFVERVLDESGQK"
     gene            complement(435..1052)
                     /locus_tag="U0280_002861"
     CDS             complement(435..1052)
                     /locus_tag="U0280_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2272778.1"
                     /translation="MTKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKL
                     EVKPVAVLLTHCHYDHIGALEEIRKTFNIPVYVSPLEQEWLSNPELNLSAHIAGKAII
                     AQPAENEFTLGEYSIEGFRFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLY
                     TGDFDMLINSIKTQLFVLPDDFPAYSGHGDATTIGHEKKTNPYFN"
     gene            1183..1572
                     /locus_tag="U0280_002862"
     CDS             1183..1572
                     /locus_tag="U0280_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2272779.1"
                     /translation="MTAKMLHTCIRVKNLTESITFYEKALGLKEVRRKDFPDFEFTLV
                     YMAFEEGGFELELTYNYDQKEAYDLGNGYGHLAVGVPDVHALLKEHQEAGFTVTDLKG
                     LPGEDPFYYFLTDPDGYKTEIIQDGAL"
BASE COUNT          518 a          305 c          255 g          530 t
ORIGIN      
        1 ctttttgacc cgattcatcc aaaacacgtt ccacaaaatc aggatcaagt acccaacaat
       61 gaacttctgt caaactacgc agtacggact cctctggttc ttctttaata atcggaatta
      121 aattaattgc tatttcgcca ccaacaaagc taataatccc agaatctcca tattcatttt
      181 ggaggcaata agagaagtat ccgctttcga ctaagtatat ttggaaacct ttcgaattat
      241 tcatcttgat ttctttacct ctaggaataa tttcttgata acaataatca tgaaagtagt
      301 aatctttttt tagtaattgt agtaatgctt ttggcgttgt ttctttgaaa atttcctcat
      361 ctgaatgcat tttccaacat cctttccatt gattacaaaa aaactgcaga ataaatgctt
      421 ctgcaagttc ttttttagtt aaaatatggg tttgttttct tttcatgacc gatagtggtt
      481 gcatcaccat gacctgaata ggctgggaag tcatctggaa gtacaaacag ttgtgtttta
      541 atactattta ttaacatatc gaaatctcct gtgtataaat ccgtacgacc gatactacct
      601 ttaaacaaag cgtcgccaac tacgacaaaa tcatcgaaaa taaaactaac gcttccgata
      661 gaatgccctg gtgtcggtac tactttaaaa cgaaaacctt ctatactata ttcacctaac
      721 gtaaattcat tttctgccgg ttgcgctata attgctttac cagctatgtg cgcagataaa
      781 tttaattctg gattggataa ccattcttgt tctagtgggc taacatatac tggaatatta
      841 aatgttttgc gaatctcttc taaagcacca atatgatcat agtgacaatg agttaacaaa
      901 actgccactg gttttacttc aagttttgca atttctgctt caattttact tgcttcatcg
      961 cctgggtcaa caattaaagc taccttatct tgataaatga tataacaatt ttcttggatt
     1021 attcctgtca tgattcgttt gatttttgtc atttcacttc cgcctttctt cacattcatc
     1081 attataccta aaaagccacc ttacttccat caatattcct tgtttgtatt cacttccgag
     1141 atatactaca atgaagaaag aagtttaaaa ggaggaataa aaatgactgc aaaaatgtta
     1201 catacatgta tccgcgtaaa aaacctaaca gaatcgatta ctttttacga aaaagcatta
     1261 ggacttaaag aagttcgccg caaggacttc ccggatttcg aattcacatt agtatatatg
     1321 gcgtttgaag aaggcggttt tgaactagaa ttaacgtaca actacgacca aaaagaagcc
     1381 tacgatttag gaaatggtta tggtcactta gcagttggtg ttccggacgt acatgcttta
     1441 ttaaaagaac accaagaagc tggttttact gtgacagatt taaaaggact acctggcgaa
     1501 gatccattct attatttctt aacagatcca gatggttata aaacagaaat cattcaagat
     1561 ggcgctttat aattagaaga actggagaag cttaatggga aaatattt
//
LOCUS       DASDXX010000305         1600 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.307, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000305 DASDXX010000000
VERSION     DASDXX010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.307"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..358
                     /locus_tag="U0280_002863"
     CDS             <1..358
                     /locus_tag="U0280_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272780.1"
                     /translation="YEYGEKKLLDVTEVKWIIGYCISLNPEYFMKQGDNYEEVRIKGD
                     KYLHELALANPDDIYLKSLDYDFGTEGHSHERYLDWKRANREQFLLYVEENFNYDSLF
                     SDCFKELITMDLDKKD"
     gene            635..1537
                     /locus_tag="U0280_002864"
     CDS             635..1537
                     /locus_tag="U0280_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272781.1"
                     /translation="MSKTVDGVTTNYHYDGDSINVLYETNNDGKVVRQYVYSDDGIRL
                     AMKMNGKSLYYHYNADDDVIALTDEAGKIVAEYTYDAWGNVLKNNASTEEAKANSYGY
                     KGYTYDKEIEQYYLMARYYEPEQGVFTAVDPDPGDEDDPQTMNGYNYASNNPVMLADP
                     DGLWAGVLFKFAAKGGKTAWKYAKKGAKKVSKSMKKWWKGFKAKPKKRQETKQTNSQL
                     KSFDSDKRKHITEPEHQWNSVSDGSWGQVQALIKRTMRSGKESSYKKSARKKTLIYNK
                     RKIIVTFVRKDGKIKIGNAWVERK"
BASE COUNT          608 a          209 c          364 g          419 t
ORIGIN      
        1 gtatgaatat ggagaaaaaa agcttcttga tgtgacagag gtaaagtgga ttattggtta
       61 ttgtatttca cttaatccag aatattttat gaagcaagga gacaattatg aggaggtacg
      121 tataaaagga gataaatatc tccatgaatt ggctttagct aatccagatg atatttattt
      181 aaaatcttta gattatgact ttggtactga aggacattct catgaacgat atttagattg
      241 gaaaagagca aatagagaac aatttcttct ttatgtagag gaaaatttta actatgattc
      301 gcttttttct gattgtttta aagaactaat cactatggat ttagataaaa aagattaaaa
      361 aagatgtttt ggagagaagt ttaggcaaac agaagaagaa acatgaaaca atttaagtca
      421 ttattaatga tgagtatttt tataagtgat ttaattagca gtgagataag agtgaacatg
      481 aaaatttgtt cggtgaagta accattaacc acggtaacca agcgatggca agtacacgta
      541 tatatgggat accggcgacc gtttaagcag cattacgaaa aaaggcgaga gcaagccgtt
      601 tacgagttat acgtacgatg atgataaccg ccacttgtcg aaaaccgtcg atggtgtgac
      661 gacgaattat cattatgatg gcgatagcat taatgttcta tatgagacga ataatgatgg
      721 aaaagtcgtc cgtcaatatg tttattcgga tgacggaatt cgattagcca tgaaaatgaa
      781 cggaaagtcg ctctattatc attacaatgc ggatgacgac gtaattgcgc tcacggatga
      841 agcaggtaaa attgtcgcgg aatatacgta tgatgcttgg ggaaatgtgc tgaaaaacaa
      901 tgcctctaca gaagaagcca aagccaattc gtatggttat aaaggatata cgtatgacaa
      961 ggaaatcgaa caatattatt tgatggcgcg ttattacgaa ccagaacaag gcgtatttac
     1021 agctgttgac ccagacccag gcgatgaaga cgatccgcaa acgatgaatg gatataatta
     1081 tgcgagtaat aatccagtga tgttagcaga tccagatgga ctatgggcag gagtattgtt
     1141 taagtttgcc gcaaaaggcg gaaaaacagc ttggaagtac gcgaaaaaag gcgcaaaaaa
     1201 agtttcaaag agcatgaaaa aatggtggaa ggggtttaaa gccaagccca agaaacgaca
     1261 agaaacgaaa caaacaaata gccaattgaa atcttttgac tcggataaaa gaaaacatat
     1321 tacggaacca gaacatcaat ggaattcggt ttcagacggg agttggggac aagtacaagc
     1381 acttattaag agaactatgc gttcaggtaa agaatctagt tataaaaaaa gtgctagaaa
     1441 gaaaactttg atttataata agcggaaaat tattgtaacc tttgttagaa aagatgggaa
     1501 aattaaaatt ggtaatgcgt gggttgaaag aaaataaaaa tgtatgatag aaaagaggta
     1561 agagagctat gataaatcta gaatgggaag aattagatcg
//
LOCUS       DASDXX010000306         1598 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.308, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000306 DASDXX010000000
VERSION     DASDXX010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.308"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            34..225
                     /locus_tag="U0280_002865"
     CDS             34..225
                     /locus_tag="U0280_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272782.1"
                     /translation="MSVEHRRFAVAIYAKLKAINMKQSDLAKMLGISNPYLSDIINGK
                     RDASKVRKEIAEILEIDVD"
     gene            244..432
                     /locus_tag="U0280_002866"
     CDS             244..432
                     /locus_tag="U0280_002866"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272783.1"
                     /translation="MIIKLDKGSYYSQQELLKQLSIGYETLRKLEIKGELSARKLGKT
                     IYYQGADVLDSWDRMLKR"
     gene            457..642
                     /locus_tag="U0280_002867"
     CDS             457..642
                     /locus_tag="U0280_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272784.1"
                     /translation="MNDEIQDLIVEIRKYDPNYIPKSVGKYLLVELQSRHLDHQIKYK
                     KRPKYKHRFANSIERHW"
     gene            877..1029
                     /locus_tag="U0280_002868"
     CDS             877..1029
                     /locus_tag="U0280_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272785.1"
                     /translation="MKLLRFFGLVSVDENGNEYIEKSDRNTLICLALTVLIAFVAGIG
                     GLILNG"
     gene            1337..1588
                     /locus_tag="U0280_002869"
     CDS             1337..1588
                     /locus_tag="U0280_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272786.1"
                     /translation="MKTIANEYQEYITERIRLGDNGIKLTAYSFENGYQARVIENLDS
                     NFVSLVLVKSHDGKNSIKDILLELTNEQLIEKLEEIKNL"
BASE COUNT          648 a          191 c          314 g          445 t
ORIGIN      
        1 taattagcta ataaggtaga aaggagcaaa cacatgtcag tagaacatcg acgtttcgct
       61 gttgcgatat acgcaaaact aaaagcaata aatatgaaac aatctgattt agcaaaaatg
      121 ttaggtatta gcaatcctta tttatcagat atcataaacg gcaaaagaga cgcatcgaaa
      181 gttagaaaag aaattgcgga aattttagaa atagatgttg attagaaagg agattgacat
      241 taaatgatca tcaaattaga caagggcagt tattattcgc aacaagagtt acttaaacaa
      301 ttaagcattg gttatgaaac attaaggaaa cttgaaatca aaggagaact ttccgcacgt
      361 aaactaggaa agactatcta ctatcaaggt gcagatgttc tagattcttg ggacaggatg
      421 ctaaagaggt gaatatgaat ataagaaggt gtgaagatga acgacgaaat tcaagattta
      481 attgttgaaa tacgaaaata cgacccaaat tacattccga aatcggttgg aaaatatttg
      541 ctagttgaac ttcaatcaag gcatttagat catcaaatta aatataagaa aagacctaag
      601 tacaagcata gattcgcgaa ttcgattgag cggcattggt aaaagaaaaa cccacagcta
      661 taaatagtaa gttagagctt actaaaaccg tgagttacaa aataatattt aaggtaatta
      721 tatcacagaa atggagatat gagaatgaag aaatttttaa atgaacatga aagtaagcta
      781 ctagtattta tgttttgttt tcaagtaggt gcattattat cagtcacata tattatcgct
      841 gaatggataa aaatattttt gaaatgaggt tttgcaatga agcttttacg atttttcgga
      901 ctagtcagtg tagatgaaaa cggaaatgaa tatattgaaa aatcagacag aaatacatta
      961 atttgtttag ctttgacagt gttaattgca ttcgttgcag gaatcggcgg attgatatta
     1021 aatggctgaa ttaataatga ttgttgcatt aatactacta ttaatgctgc ttgcaaggag
     1081 tgatagagaa tgaatgtaga aaatccgatg atagttgatg attactggga tgatggattt
     1141 cgacactgag gagcgttgat agatgaatgt agaaaataca atcgatttat gcagattaaa
     1201 agaaatgttg ttatatcaaa aagaaaaaac gcaaagaaat tgattttcag attgagattt
     1261 tagagcgatt gataaatgag acatcaaaga aagataacaa agaaactcaa atatggctga
     1321 gcaaggagtt aaacacatga aaacaatcgc aaatgagtat caagaataca tcacagaaag
     1381 aataagacta ggtgacaacg gtataaagct aactgcttat agttttgaaa atggctatca
     1441 agcgagagtg atagaaaacc ttgactctaa ttttgtatca ctcgtacttg taaagtctca
     1501 tgacggaaaa aactctataa aagatatttt gcttgaatta acgaacgaac aactgattga
     1561 aaagctagaa gagataaaga atttataaat taagaagt
//
LOCUS       DASDXX010000307         1555 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.309, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000307 DASDXX010000000
VERSION     DASDXX010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.309"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..705
                     /locus_tag="U0280_002870"
     CDS             <1..705
                     /locus_tag="U0280_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272787.1"
                     /translation="NVSINKMNLIYQGENYSALQIGTVMTHPNYRGQGLAKNLLNHVI
                     AKYEDQYDFLYLFANDTVLDFYPKFGFERIEESSFTVDACNLKKKASKLKKLNPDNKT
                     DFQLISRIVSKRAPLSNILDVKESEDLLMFYVLIALKNELYYLEELDVIVLMEQEGTD
                     LYVLDILSTKKLDVVEVLSYLSTKKIETIHLLFTPEKSKYIDAAYIIETEDMLFVRPN
                     VLTSENYFLFPATSHA"
     gene            complement(696..1046)
                     /locus_tag="U0280_002871"
     CDS             complement(696..1046)
                     /locus_tag="U0280_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2272788.1"
                     /translation="MEIQVEEAVVKLILHGGNTRKEAYKAIDFAEKYQFDEADKHLQI
                     AQDQFQEGHIWQTKLVSIRDSETVAHPSFLLIHGQDHLMTAQAELQLAKRIIKQYKHQ
                     QRIEERLTKLENQA"
     gene            1197..1388
                     /locus_tag="U0280_002872"
     CDS             1197..1388
                     /locus_tag="U0280_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272789.1"
                     /translation="MEERLYELEDKVQDLELEVHDLRDRIQLLEDKPAARSSLLGHNV
                     WVLIPLVAIISWMVVEIFS"
BASE COUNT          494 a          232 c          291 g          538 t
ORIGIN      
        1 aacgtctcca ttaacaaaat gaatttaatt tatcaagggg aaaattatag tgcgttacaa
       61 attggaacag taatgacgca tccgaattac cgtggacagg gtcttgctaa gaatttatta
      121 aatcatgtga tagctaagta tgaagaccag tatgattttc tttatttatt tgcaaatgat
      181 actgtattgg atttttaccc gaaatttggg tttgaacgta tagaggaaag tagttttact
      241 gtagatgctt gcaatttgaa aaaaaaagct agtaaattaa aaaagctgaa tcccgataat
      301 aaaacggatt ttcagctaat tagtcgtatt gtatccaaaa gagcaccact ttctaacata
      361 ttagatgtca aagaaagtga agatttactg atgttttatg tattaattgc gttaaaaaac
      421 gagctttatt atttggaaga attagatgta attgttctga tggaacagga aggtactgat
      481 ctatatgtac tggatattct tagtacaaaa aaactagatg tggtggaagt tctaagttat
      541 ctttctacca aaaaaattga aacaatccat cttcttttta cgccagaaaa aagcaaatac
      601 attgatgcgg cttatatcat tgaaacggaa gatatgttgt ttgtgcgtcc aaatgtgctt
      661 acaagtgaaa attacttctt atttccagcg acctctcacg cttgattttc aagtttagta
      721 agtcgttctt cgatacgttg ttgatgtttg tattgtttaa tgattctttt ggcaagttgc
      781 aattccgctt gtgccgtcat taagtgatcc tgcccatgaa taagtaaaaa ggaaggatga
      841 gctaccgttt ctgagtcgcg aatggatact aattttgttt gccaaatatg accttcttgg
      901 aattgatcct gtgcgatttg cagatgttta tcggcttcat caaattgata cttttccgca
      961 aaatcaattg ctttgtatgc ttcttttcgt gtgtttccgc catgcaaaat gagttttaca
     1021 acagcttctt ctacttgaat ttccattttt ccaccccaac agttgatagt tttctttcat
     1081 tgtagcaaat gcctgaacgg tatgacaata aattagcaat aaatcagcct atggaacgat
     1141 gtgtttcatg gagcttagcg tataataggc aatagaaaag gtgtggaggg attcaaatgg
     1201 aagaacgttt atacgaactt gaagataaag tacaagacct tgagcttgaa gtgcatgatt
     1261 tgcgtgatag aattcaactg ctcgaagaca aaccagctgc tcgctctagc ttacttggtc
     1321 ataatgtatg ggtcttaatt ccattagtcg ctattatttc ttggatggtt gtagaaattt
     1381 ttagttgaag gggaccttta atggtttcct ttttatttgt aatatagtaa tttttataca
     1441 gaaaataaca ataaaagtaa gccagttctc atctttctta tctttgtcac aaaaaatcta
     1501 tatttattta cttgcttttt tcaagaacaa tagtaaaata agttatagga tagag
//
LOCUS       DASDXX010000308         1528 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.310, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000308 DASDXX010000000
VERSION     DASDXX010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.310"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1355
                     /locus_tag="U0280_002873"
     rRNA            <1..1355
                     /locus_tag="U0280_002873"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            1433..>1528
                     /gene="rrf"
                     /locus_tag="U0280_002874"
     rRNA            1433..>1528
                     /gene="rrf"
                     /locus_tag="U0280_002874"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          401 a          352 c          457 g          318 t
ORIGIN      
        1 gaaggaaatt aagtacggaa gttcctgatt tcacgctgtc aagaaaagcc tctaggaaga
       61 gtagtactgc ccgtaccgca aaccgacaca ggtagatgag gagagaatcc taaggtgagc
      121 gagagaactc tcgttaagga actcggcaaa atgaccccgt aacttcggga gaaggggtgc
      181 tctattaggg tgcaagcccg agagagccgc agtgaatagg cccaggcgac tgtttagcaa
      241 aaacacaggt ctctgcaaaa ccgtaaggtg acgtataggg gctgacgcct gcccggtgct
      301 ggaaggttaa gaggagtgct tagcttcggc gaaggtacga attgaagccc cagtaaacgg
      361 cggccgtaac tataacggtc ctaaggtagc gaaattcctt gtcgggtaag ttccgacccg
      421 cacgaaaggc gcaacgatct gggcactgtc tcaacgagag actcggtgaa attatagtac
      481 ctgtgaagat gcaggttacc cgcgacagga cggaaagacc ccgtggagct ttactgcaac
      541 ctgatatgga atgtttgtac cgcttgtaca ggataggtag gagccgaaga gacgtgtgcg
      601 ctagcatacg aggaggcaat ggtgggatac taccctggct gtatgaccat tctaacccgc
      661 cacgcttagc gcgtggggag acagtgtcag gtgggcagtt tgactggggc ggtcgcctcc
      721 taaagagtaa cggaggcgcc caaaggttcc ctcagaatgg atggaaatca ttcgcagagt
      781 gtaaaggcac aagggagctt gactgcgaga ctgacaagtc gagcagggac gaaagtcggg
      841 cttagtgatc cggtggttcc gcatggaagg gccatcgctc aacggataaa agctaccccg
      901 gggataacag gcttatctcc cccaagagtc cacatcgacg gggaggtttg gcacctcgat
      961 gtcggctcgt cgcatcctgg ggctgtagtc ggtcccaagg gttgggctgt tcgcccatta
     1021 aagcggcacg cgagctgggt tcagaacgtc gtgagacagt tcggtcccta tccgtcgcgg
     1081 gcgcaggaaa tttgagagga gctgtcctta gtacgagagg accgggatgg acacaccgct
     1141 ggtgtaccag ttgttccgcc aggagcatcg ctgggtagct atgtgtggca gggataaacg
     1201 ctgaaagcat ctaagcgtga agcccccctc aagatgagat ttcccatttc ttcggaaagt
     1261 aagatccctg aaagatgatc aggtagatag gtttggagtg gaagtgtagc gatacatgga
     1321 gcggacaaat actaatcgat cgaggactta accaaaaaat gaaacgaagt tacctaactg
     1381 aaccctttct tctctagttt tgagagagca atctttcaac aactttatat tgtctggtag
     1441 ttatggcgag aaggtcacac ccgttcccat cccgaacacg gtagttaagc ttctctgcgc
     1501 caatggtagt tgggggcttc cccctgcg
//
LOCUS       DASDXX010000309         1515 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.311, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000309 DASDXX010000000
VERSION     DASDXX010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.311"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            101..634
                     /locus_tag="U0280_002875"
     CDS             101..634
                     /locus_tag="U0280_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEM2272790.1"
                     /translation="MRKKTLAVFLVFTVLVALLAPTNASAYTKLGYVMTKASAKNFKI
                     YINGSAKGFKNIIISGAKAWNPSPYLNTVSIGNDVKPNFTVSSSGTNKGSVLAVCNTT
                     YYKSNKLISKNEITLYKGFRSLSTNHKIETIVHEFGHGFGLGHVKTKNAIMLDKGFIN
                     KTKPQTDDFNGIKALYK"
     gene            650..1315
                     /locus_tag="U0280_002876"
     CDS             650..1315
                     /locus_tag="U0280_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272791.1"
                     /translation="MKKRITMILGLVCLSTLTACSNSENVKEKTSEEPATAQNGAETI
                     KAHNGVVSYHGKYLKLAENMDTLEKDAPIIIKATKKSEKTTVTKETKENVFPTDFYTM
                     SDVQINSIEKDTTGKLSESMTIKVLEYSVENVLVEGKEYDLTIDGYKNMEKGEEYTLF
                     LEKNPDGENYILSNAVISKFPVEELPEEELFLDGGQTTEETDSIEEIYQEVYQEVLEE
                     FGE"
BASE COUNT          608 a          202 c          292 g          413 t
ORIGIN      
        1 tgtaagatga aaagaatatc tttttaacaa attatgtatg gatttaattt aaaataaacg
       61 cacacaaaat gtgtggaatt tgagcgaagg agtaaacatc atgaggaaaa aaacgttagc
      121 agtgtttctt gtttttacgg tgttagttgc gttattagcg ccaactaatg caagcgcata
      181 tacaaaactt ggatatgtga tgacaaaggc tagtgcaaaa aattttaaaa tttatattaa
      241 cggttcggcg aaagggttta aaaatattat tataagcggt gcgaaagctt ggaatccttc
      301 tccttactta aatacggtta gcataggaaa tgatgtcaag cctaacttta cggttagtag
      361 ttcgggtaca aataagggga gtgttttggc ggtctgcaac accacttact acaaatcaaa
      421 taaattaatc tccaagaatg agatcacttt gtataaaggc tttcgttcac tttcaacgaa
      481 tcataaaata gaaactattg tgcatgagtt tggtcatggc tttggcttag ggcacgtgaa
      541 aactaaaaat gcaattatgt tagacaaagg atttataaat aaaacaaaac ctcaaacaga
      601 cgattttaat ggcatcaaag ctttatataa gtaaaaagga ggaatgacaa tgaagaaaag
      661 aataacaatg attctaggtt tagtatgtct tagtacatta actgcttgtt ctaatagtga
      721 aaatgtgaaa gaaaaaacat cagaagaacc agcaacagct caaaacggag cagaaacaat
      781 aaaggcgcac aatggggtgg tctcttatca cggaaaatac ctcaaacttg ctgaaaatat
      841 ggataccctt gaaaaagatg ccccaattat cattaaagca accaaaaaat ctgaaaaaac
      901 aactgtaaca aaagaaacaa aagaaaatgt atttccaacc gatttttata cgatgagcga
      961 tgtgcaaata aattctatcg agaaagatac aacaggaaaa ttgagcgaga gtatgactat
     1021 taaagtgttg gagtatagcg tagaaaatgt tttggtagaa gggaaagaat atgatttaac
     1081 tattgatggt tataaaaata tggaaaaggg agaagaatat acacttttct tagaaaaaaa
     1141 tccagatggt gaaaattata tactatcaaa tgcagttata agtaaattcc cagtggaaga
     1201 attacctgaa gaagaattgt tcttagatgg agggcaaaca acggaagaaa cagatagcat
     1261 tgaagaaatt tatcaggagg tctatcaaga agttttggaa gaattcggtg aataaaaaag
     1321 tttaaacgcc cgtaagacct cggtgtaaaa atcgaggtct aatttttttg aaataaaaat
     1381 ttgataaaaa atgaagttta atctagacag tttttcgtga taaaacacca taaaagcctc
     1441 ttgacagaac cagactatac aagtagaatg aatcaaacca aatcaacatt tttgctagaa
     1501 atggttagat tttta
//
LOCUS       DASDXX010000310         1513 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.312, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000310 DASDXX010000000
VERSION     DASDXX010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.312"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..619)
                     /locus_tag="U0280_002877"
     CDS             complement(<1..619)
                     /locus_tag="U0280_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HEM2272792.1"
                     /translation="MLKKTIAIIILIIGLLLIFSPFIKNGIVKYMSGHETIEQYKASD
                     IKKNNEKDATFDFESVQLPSMTSVIKGAANYDKDAVVGSIAVPSVDVNLLVFKGTNTA
                     NLLAGATTMRSDQVMGKGNYPLAGHHMRDESMLFGPIMKVKKGDKIYLTDLENLYEYT
                     VTETKTIDETEVSVIDDTKDARITLITCDKPTETTKRFVAVGELEK"
     gene            complement(728..1351)
                     /locus_tag="U0280_002878"
     CDS             complement(728..1351)
                     /locus_tag="U0280_002878"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEM2272793.1"
                     /translation="MEAIITKEFFEDKTTIELARDILGMRLVHQTDEGILSGLIVETE
                     AYLGATDMAAHSFQNLRTKRTEVMFSSPGRIYMYQMHRQVLLNFITMPKGIPEAILIR
                     AIEPDEQAKQQMVQNRHGKTGYELTNGPGKLTQALGLSMQDYGKTLFDSNIWLEEAKL
                     PHLIEATNRIGVPNKGIATHFPLRFTVKGSPYISAQRKSRILTDIWK"
BASE COUNT          399 a          295 c          257 g          562 t
ORIGIN      
        1 ttttttctag ttcaccaacc gcgacaaacc gttttgttgt ttcagttggt ttatcacatg
       61 taataagtgt aattctagcg tctttcgtat cgtcaatcac acttacttct gtttcatcaa
      121 tcgtttttgt ttccgtaaca gtgtattcgt ataaattctc aagatctgtt agataaatct
      181 tgtcgccttt tttgactttc attataggac caaacaacat agattcatca cgcatatggt
      241 gacctgccag cggatagtta cccttaccca tgacttgatc agaacgcatg gttgttgcac
      301 ccgccagtaa attagctgta tttgttcctt tgaaaactaa gaggttaacg tctacagatg
      361 gaactgcgat agaaccaacg actgcatctt tgtcgtaatt tgctgctcct ttaataacag
      421 atgtcataga gggtagctga acactttcaa aatcaaatgt agcgtctttt tcattatttt
      481 tctttatatc tgatgcttta tattgctcga ttgtttcatg accactcatg tatttcacaa
      541 tgccgttttt gatgaatggg gaaaaaatta atagtagccc aatgattaaa ataattattg
      601 caattgtttt ctttaacata taattcctcc ttgtaactat ttcattatat agtagctctt
      661 cttatgaagc aaagaaaatc agtgtctgga taaaactatt ttctctacct gtgacaaaat
      721 tgtaaagtca cttccaaata tcggtaagaa tccgactttt tcgttgagct gaaatatatg
      781 ggctgccttt aacagtaaat ctgagtggaa aatgagttgc aattcctttg tttggcaccc
      841 ctattcgatt agttgcttct attaaatgcg gcaattttgc ctcttctaac caaatgttac
      901 tatcaaaaag agttttcccg taatcttgca tacttaatcc taaagcttgc gttaattttc
      961 cggggccatt ggtaagttcg taaccagttt ttccgtgacg attttgtacc atttgttgtt
     1021 tagcttgttc gtcaggttcg atggctcgta ttagaatggc ttctgggatt ccttttggca
     1081 tggttataaa attaagcaac acttggcgat gcatttggta catgtagatt cttcccggcg
     1141 atgaaaacat gacttctgtt cgtttcgttc ggaggttttg aaaactatgt gcagccatat
     1201 ctgttgcccc gaggtacgct tctgtttcca ctattagccc agatagaatt ccctcatccg
     1261 tttgatgtac tagacgcata cccaagatat ctctcgctaa ttcgattgtt gtcttatctt
     1321 caaaaaattc tttcgtaata atcgcttcca tttcatacct caatgttttc tttttattct
     1381 agcagaattc tattccaaat ggttcttttt tgactagtta tatcagccta tttcccctaa
     1441 aatcctactt cagacgtata ggttataact tgccttttat taatcttgtg ttagaattat
     1501 gttaaagtgg gtg
//
LOCUS       DASDXX010000311         1505 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.313, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000311 DASDXX010000000
VERSION     DASDXX010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.313"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..113)
                     /locus_tag="U0280_002879"
     CDS             complement(<1..113)
                     /locus_tag="U0280_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant"
                     /protein_id="HEM2272794.1"
                     /translation="MLKFEHVTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSG"
     gene            complement(406..966)
                     /gene="thiT"
                     /locus_tag="U0280_002880"
     CDS             complement(406..966)
                     /gene="thiT"
                     /locus_tag="U0280_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HEM2272795.1"
                     /translation="MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYV
                     IAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRS
                     NLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGAS
                     CLGTVLVSGIIISILLKTSPKLFLPK"
     regulatory      complement(1034..1144)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(1214..>1505)
                     /locus_tag="U0280_002881"
     CDS             complement(1214..>1505)
                     /locus_tag="U0280_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM2272796.1"
                     /translation="ALTVGGKIFALIHMYHGDLYVSVKCQPERIDLLRDEYLSIKPGY
                     HLNKKHWITLVINENYDVEAETEFALIKNSYQLIFDKLPKKAQNTVKFSAND"
BASE COUNT          507 a          312 c          227 g          459 t
ORIGIN      
        1 ccacttggac cgataaaaca aacaaattct cctttatcga tgtttagtgt tagatcatta
       61 actgcttttt tgcccccttt ataagtcttt gttacgtgtt cgaattttaa cacgcttaca
      121 cacctccatt ttttctttac caataccaaa aaaattggca atcggtaact aatttcccta
      181 actagtatag atttaaactt tttaaataca aaaaaacagc ttaaagacag tgttacattc
      241 aaacggaagt tactaaacaa gatgatttcg tacttgtggc acgtgtgaca tcgatgctaa
      301 actcgtaatc gtgaaaatga gcattgtaat aagctgcaat atagtattta tttaattata
      361 acacacttaa aaaggcccaa aagcaattgc ttctggacct tttggttatt ttggtaaaaa
      421 taattttggt gaagtcttca ataatatcga aataatgata cctgaaacaa ggacggtacc
      481 aaggcaacta gctccattca tcacgattga aaatagttgt gctccccaac cttgaaatgc
      541 ataagcaccc cagaataata ctcctgcgac atagtgccaa aaatatcgag ctactcctcc
      601 aataatcatg gttccccacg cccattcaat tgcttttttg agttgattag cagctaaatt
      661 acttcgaact tgcttgctaa agacaccgct gaaagcaata aaactgaatg ccaaaatata
      721 ctcaataatt gcctgggagg gcattaatat atatgcctta cctgttaaga aatgtagtaa
      781 cccccataac aatcctgcga atccagccgc ccaaaaaccg cgtcgaatcg cgataacata
      841 cattggaatc attccaagcg agatggaaaa actggaacca atgtctagcg ggatgaaact
      901 taataccatc gcaactgcag caaagatagc acactcaagt aaaatgatta atcgtttgtt
      961 ttgcataaaa aataaactcc cctcttcttt ttggtcaaaa acgtacccca gaagaaagca
     1021 gtttctattg ttagaaatgc aatcgccaca atccctacgc tcgtattaac gaacaggttc
     1081 aaagggtcag aatccaaaaa cacgtggact caatctcagc taagaagccc cccctgtggt
     1141 aacgtctatg aaattatcgt acaacaatta ttatagcatg cacttctttt ttgtaaagaa
     1201 ttatttgttt tctttaatca tttgcagaaa attttacagt attttgtgct tttttcggta
     1261 gtttatcaaa aataagctga taactatttt tgattaaggc aaattcagtt tctgcttcca
     1321 catcgtaatt ttcatttatt acaagtgtaa tccaatgctt tttatttaaa tggtaacctg
     1381 gttttatgct caaatattca tcacgcaaca aatcaattct ttcaggctga catttaacgc
     1441 taacatataa atccccgtga tacatatgta tgagcgcaaa tatcttccca ccaactgtta
     1501 aagcg
//
LOCUS       DASDXX010000312         1481 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.314, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000312 DASDXX010000000
VERSION     DASDXX010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.314"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(85..1284)
                     /locus_tag="U0280_002882"
     CDS             complement(85..1284)
                     /locus_tag="U0280_002882"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEM2272797.1"
                     /translation="MAKNRHLFTSESVSDGHPDKIADQISDAILDAIISKDPDARVAC
                     ETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDAETCAVLTAIDEQS
                     PDIAQGVDEALESRSGKEIDAAIEAIGAGDQGLMFGFATDETEELMPLPIFLAHGLAR
                     KLTELRKTNKLDYLRPDAKTQVTVEYDEFNQPVRIDTIVVSTQHHPDITQEQIAKDLH
                     TYLFPEVIDASFLDEDTKYFINPTGRFVIGGPLGDAGLTGRKIIVDTYGGYARHGGGA
                     FSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSD
                     YSEQELIDGVNELFDLRPAGIIHMLDLRRPIYRQTAAFGHFGRSDLDLPWERTDKAEA
                     LKKLIVK"
     regulatory      complement(1391..>1481)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
BASE COUNT          416 a          337 c          267 g          461 t
ORIGIN      
        1 ctatcatatc ataactagac tttctttgca ctgtttagga aagaaaaaaa ccgaacattc
       61 cttacaagaa atgttcggtt aagcttattt tacgattaat ttttttaagg cttctgcttt
      121 atcggttctt tcccaaggta aatcaagatc gctacggcca aaatgaccaa atgcagctgt
      181 ttgacgataa attgggcgac gcaaatcaag catatgaatt atcccagctg ggcgtaaatc
      241 aaatagctca ttaacgccat caattaattc ttgttctgaa tagtcacttg ttccatatgt
      301 gtcaatcgaa atggaaactg gacgagcaac tccgatagca tacgcgactt gtacttctac
      361 ttttttagca agtcctgcag caacgatatt tttagctaca taccttgcag cataagcgcc
      421 cgatcggtca actttggtcg gatctttacc ggagaacgct cccccgccgt gacgcgcata
      481 accaccgtat gtatccacga taattttacg cccagttaag cccgcatcgc caagaggacc
      541 accaataaca aagcgaccag ttggattaat aaagtatttc gtatcttcat ctaagaaaga
      601 ggcatcaatc acttctggga aaaggtacgt gtgcaagtct tttgcgattt gctcttgcgt
      661 aatgtccgga tgatgttgcg tcgaaacaac aattgtatca atccgaactg gttgattaaa
      721 ttcatcgtat tccaccgtta cttgtgtttt cgcatcggga cgcaagtagt ctaatttatt
      781 tgttttacgt aattctgtta acttacgtgc taagccatgt gctaaaaaga ttggcagtgg
      841 cattaattct tctgtttcat ctgttgcaaa accgaacatt aatccttggt ctcccgctcc
      901 gattgcttca atagccgcat cgatttcctt accacttctt gattctagtg cttcgtcgac
      961 tccttgcgca atatctgggg attgttcatc aatcgctgtt aaaacggcac acgtttctgc
     1021 atcgaaacca tattttgcac gtgtatagcc gatttcttta attgtatcac gcacgatttt
     1081 aggaatatcc acataaacag aggtggtaat ctcacctgct actaatacta aacccgttgt
     1141 cacagtagtc tcacaagcga cacgtgcgtc cggatctttt gaaataattg catctaaaat
     1201 tgcatcagat atttgatctg caattttatc tggatgtcca tcagaaaccg attctgatgt
     1261 aaatagatga cggttcttag ccaatttatt ttcctccttc aattctctcc aaatacgtct
     1321 catataaaaa gcctctctct attttgcaca aaacgcgcac gaatagagaa aggctataat
     1381 tatacctttg ctctcatcgt tcagaagata atactcctgc aacagattag cacctttcac
     1441 ttatatgtgt aggttgctgg gcttcaaagg gtcagtccct c
//
LOCUS       DASDXX010000313         1474 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.315, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000313 DASDXX010000000
VERSION     DASDXX010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.315"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..139)
                     /locus_tag="U0280_002883"
     CDS             complement(<1..139)
                     /locus_tag="U0280_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272798.1"
                     /translation="MEKLFTYKEFVDMMQKYGIRHTKRKLRRGENLMENASKFSNVVL
                     LI"
     gene            507..1454
                     /locus_tag="U0280_002884"
     CDS             507..1454
                     /locus_tag="U0280_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM2272799.1"
                     /translation="MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRA
                     KDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTL
                     SKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDL
                     KKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTM
                     EEIGYINSEDIEELRYKDVVGDINSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVV
                     ALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND"
BASE COUNT          524 a          253 c          266 g          431 t
ORIGIN      
        1 ctattagtaa aacaacatta ctaaatttag aagcgttctc cattaaattt tcgccacgtc
       61 ttagcttgcg tttcgtgtgt ctaatcccat atttttgcat catgtcaaca aactctttat
      121 atgtaaataa cttttccact atagcccact ccttttctaa aataatttag taagcgatat
      181 ataagttggg cgagaactca acttatgtta ccatgtgcgg cttggcagat tttctccata
      241 gagatggaat aatgatattt cttctagaat aattctaaaa aaatttggtg aattcctcgt
      301 aaataagaaa aaaagttgtt tgtttttttg tcacaaataa atagtatgca cactgtctat
      361 ttcaaaatta ctcctttttc ggcaaaaacg atgttcctat ctaccccaac ttttcataaa
      421 gcaaattcta tgatactatt agcataaaaa catttgtgac atcgtataac ttttgttcca
      481 ttatgatgta aatggaggta agtagaatga aatgggaaga aaaaagagat atggtgaaaa
      541 tcgctacgtg gtactatcac tacggctgga cccaagcgca aatcgccaaa aaaatcggga
      601 tttcaagatc cattatctct aaaactttgc aacgcgcaaa agacttaggc attgtggaaa
      661 tctttattaa agacgaaact tactatacgg tagatttaga acaaaaatta gaagaaaagt
      721 ttggtttaga ggaagcgatt gtcgttgcaa cgcacgatat gtctgaggaa gaagcactga
      781 atttccttgc caaagaagct gcctatacac tgagtaaaag gattgctaaa gtaaaaactc
      841 tcgggatttc atgggggaaa acaattcgca aatttgctaa tgaattccca ttcatcccgc
      901 ataaagactt aacaattatt ccgcttatag gtggaatggg ctcgagtgat attgatctgc
      961 attccaatca aatttgttat gatttaaaga aaaaaatgaa atgccactcc aaatatttgt
     1021 atgcgcctgc gctcgttgaa gatacggaaa tgaaaaccga tttatccaaa aacaaatata
     1081 ttagcgaagt attagaagaa ggaaaaacgg ttgatatggc tattgtcggt gtatcgagcc
     1141 cttataatca cagcacaatg gaagaaatcg gctatattaa ttctgaagat attgaagaac
     1201 tacgctataa agatgttgtc ggtgatatta attcacgctt tttcacagca gacggaaaag
     1261 aagcaaaaac tgagattaac acccatgtaa tcggtcttag tctagaggag ttgaagaaca
     1321 tccccaccgt cgtcgcactt gcaaacggat tacaaaaaaa agaagcatta gtggcagctc
     1381 ttaatgccgg attgatagat gtgattgtga ttactgatag aatggccgaa tacattcttc
     1441 aaaaaaacga ctaaaaaata atcctaacta taaa
//
LOCUS       DASDXX010000314         1454 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.316, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000314 DASDXX010000000
VERSION     DASDXX010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1454
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.316"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            5..796
                     /locus_tag="U0280_002885"
     CDS             5..796
                     /locus_tag="U0280_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carotenoid biosynthesis protein"
                     /protein_id="HEM2272800.1"
                     /translation="MLEKNYKFLLWIYIFWFLGSVLLVSLHIIPPELTAVQSLFLVFT
                     GVFAAVFFIMQYGKWLGSAITLLIFVVSTCIEWMQLSYTDEYIGSTLGGSVYGIPITM
                     GFIWVGMVAGTHIIAREITLKINIDWIRGGIYSFIAATMVMIFEVLIEPITMQSKQLY
                     ITQNGFTILQLSDFINWWLLGLILHLMIYFILSLTDSWERLKYPDLKSEIVIVYWIII
                     AFFVFLSFYLDLWTSIAIIIVSNIIFTACYFFSLEKEAQPKKKSE"
     gene            complement(797..>1454)
                     /locus_tag="U0280_002886"
     CDS             complement(797..>1454)
                     /locus_tag="U0280_002886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phytoene dehydrogenase"
                     /protein_id="HEM2272801.1"
                     /translation="DYYFTNLDFIYSLTNEHPDKLDNKEYSSSAFILYLGLKTVLPFS
                     HQSIIFPENYREFAHNTMHKKILSKDIAIHLTNPSATDNTMAPINHSSIRIMVPVPNN
                     TSNIDWKKETPAFRQLVLETIKERLDLPDLESQIEEEYIITPIDWEKKYHVKHGAIFG
                     LQHLWRQHGYLHPSKKSPTFKNLFVIGAGAMSGSSLPFIIENAQIATQKFLQKEKKSE
                     "
BASE COUNT          424 a          209 c          273 g          548 t
ORIGIN      
        1 atagatgtta gaaaaaaact acaaattttt actttggatt tatatattct ggtttttagg
       61 tagcgttttg ttagtatcct tacacattat tccaccagag ctaactgcag ttcaatcact
      121 atttttagta tttactggtg tttttgcggc tgttttcttt attatgcaat atggtaaatg
      181 gcttggttct gctattacgc tacttatttt tgttgtaagt acatgtattg aatggatgca
      241 actaagttat acagatgaat atattggttc aacgttaggt ggaagtgttt acggaattcc
      301 tattacaatg ggctttattt gggtcggaat ggttgccggg acgcatatta tcgctcggga
      361 aattacattg aaaattaata ttgactggat tcgtggaggt atttattcgt ttatcgcagc
      421 aacgatggta atgatttttg aggttttaat cgaaccaatt acaatgcaat caaaacaact
      481 ttacattacg caaaacggct tcacgatttt gcagttatct gactttatta attggtggct
      541 tttaggactt attttacatt taatgattta ctttattttg agtttaacgg atagttggga
      601 gcgtcttaaa tatccagatt taaaatcaga aattgtcatc gtttattgga ttattattgc
      661 ctttttcgta tttttgtcct tttaccttga tttatggaca tctattgcga ttattatcgt
      721 ttctaatatt attttcactg cttgttattt tttcagtttg gaaaaagaag cgcagcctaa
      781 aaagaaatcc gaatgattac tcggatttct tttctttttg taaaaatttc tgggttgcga
      841 tttgcgcatt ttcaataata aatggaagcg agctacccga catcgcgcct gcaccaatta
      901 caaataagtt tttgaatgta ggcgattttt tggagggatg taagtaaccg tgctggcgcc
      961 ataaatgctg taaaccaaag atcgcgccgt gtttaacatg atatttcttt tcccagtcta
     1021 tcggtgtaat gatatattct tcttcaattt gcgattctaa atctggtaaa tctaaccgtt
     1081 ctttgatagt ttctagcact aattgacgaa aagcaggtgt ttcttttttc caatcaatat
     1141 tactcgtatt gttaggcaca ggaaccataa ttcgaatact agaatgatta attggcgcca
     1201 ttgtattatc agttgcagaa ggattagtca aatgtatagc gatatcctta gagaggattt
     1261 ttttatgcat tgtattatgc gcaaattctc ggtaattttc agggaaaata attgattgat
     1321 gcgaaaaagg taacactgtt tttaaaccaa gataaaggat aaaggcagaa gaggagtatt
     1381 ctttattgtc caatttatct ggatgctcat ttgttaaaga ataaatgaaa tctaaattgg
     1441 tgaaataata atct
//
LOCUS       DASDXX010000315         1452 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.317, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000315 DASDXX010000000
VERSION     DASDXX010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.317"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>1452)
                     /gene="virA"
                     /locus_tag="U0280_002887"
     CDS             complement(<1..>1452)
                     /gene="virA"
                     /locus_tag="U0280_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease VirA"
                     /protein_id="HEM2272802.1"
                     /translation="FKRWELFGPAMFSSASLMLILFIIFFIFYSNGFFLKRRKREIGL
                     YSLLGLRKSQIVLVLFFENAMLYMLATIFGVLIGIFSSKLFAMVLFWIVGLAIDAEFI
                     ISFKAIIDTILVFFGIMLFTSVYAVFLVLRYNLNQLFKNDDKEEKVAKGSLIFMLIGL
                     ALITFGYYLATRNIEESPIWLAYDFFDLILVILACVILGTWLMVRFGTPYVIRQLYNN
                     KRFFYKGTNMLGITSLRFRLKKNAGTIAMIAVLSATTLTIIGSMSSFYVRTINDISAE
                     NPSSYQVLNISAKNEKEIIQTIRDDQDHKLKKLMQAEMLSAEVEYKDIPKYKMHMDTF
                     IHTIVSESEYNRIGERQQSDFVESKKIAYGDAILLGKNTYYARSDIQEKWLTRKMVVQ
                     SNKSVAKKMPPIKVVDFRENSIFNTGISYETLVVSDEYYDDLERLFPPESVTMFDITN
                     PNHSESLDKKVQTIVDGEPSLFSENVSSYYTNY"
BASE COUNT          519 a          275 c          210 g          448 t
ORIGIN      
        1 ggtaattcgt ataataagaa gaaacatttt ccgagaataa tgaaggctcc ccgtcaacga
       61 ttgtttgcac tttcttatcc aagctttcac tatgattcgg attagtaata tcaaacattg
      121 tcacagattc aggagggaaa agtcgctcca aatcatcata atattcatcg gaaacaacca
      181 gcgtttcata agaaatccct gtattgaaaa ttgaattttc tcgaaaatcc actactttta
      241 ttggtggcat tttctttgca actgatttat ttgattggac gaccatttta cgagtaagcc
      301 atttttcttg aatgtccgat cttgcgtaat aagtattttt tccaagtaag attgcatcac
      361 cataggcaat ttttttagat tcgacaaaat cactctgctg cctttcaccg atacgattat
      421 attctgattc cgatacaatg gtatgaatga atgtatccat atgcatttta tatttaggaa
      481 tatctttata ttccacttca gcactaagca tctctgcttg catcaatttt ttcaatttat
      541 gatcttgatc atcgcgaatc gtttgaataa tctctttttc atttttagca gaaatattga
      601 gcacttgata actggaagga ttctccgctg aaatatcatt aattgtacgc acataaaaac
      661 tactcatgga gccgataatc gttaacgttg tcgcactaag aacagcaatc atcgcaatcg
      721 taccagcatt tttctttagc ctaaaacgaa gcgatgtaat ccctagcata ttcgtccctt
      781 tataaaagaa acgtttatta ttgtatagtt gtcgaatgac ataaggggtg ccaaatctaa
      841 ccatcagcca ggttcctaaa ataacgcaag ccagtatcac taaaattaaa tcaaaaaaat
      901 cataggctag ccaaataggc gattcttcaa tattcctcgt tgccagatag tatccaaaag
      961 tgattaaagc taacccaatt aacataaaaa ttagtgaacc tttagctact ttttcttctt
     1021 tgtcatcatt tttgaatagc tgattcaaat tataacgtaa tacaagaaaa actgcataaa
     1081 ccgatgtgaa aagcataata ccaaaaaaga ccagtatcgt atcgataatc gctttaaatg
     1141 aaataataaa ctctgcatca atcgcaaggc cgacaatcca aaataagacc attgcaaaca
     1201 atttagaaga gaaaattcca attaaaacgc caaaaatagt tgcaagcata tatagcatcg
     1261 cattttcaaa aaataatact aatacaattt gtgattttcg caaaccaagt aatgaataaa
     1321 gccctatttc tcgttttcgc cttttaagaa aaaaaccatt ggaataaaat ataaaaaaga
     1381 taataaacaa tattaacatg agactagctg acgaaaacat ggccggtccg aataattccc
     1441 aacgtttaaa ca
//
LOCUS       DASDXX010000316         1451 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.318, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000316 DASDXX010000000
VERSION     DASDXX010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.318"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            74..499
                     /locus_tag="U0280_002888"
     CDS             74..499
                     /locus_tag="U0280_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HEM2272803.1"
                     /translation="MTQKLIYFLSQTHIRSAIAEAWAKRLSLSNVKFISGSWHKSKST
                     PFIAEALNEFAIEPPESLSYSPSSELLADADLIVTIYDSAHETAPKFPANIQEKIIYW
                     DIDDPEQEIALPKKWASYQEVCDNIALSVKNLEHVLIEA"
     gene            563..1432
                     /locus_tag="U0280_002889"
     CDS             563..1432
                     /locus_tag="U0280_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2272804.1"
                     /translation="MDGYNDLKKAEKAAFLSIFAYLFLAVLKIVAGQLGNSDALLADG
                     LNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTETISSLIASIIMFLVGVQVIWSS
                     IVHIIEKEFATPSMLTAVVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAF
                     VSLGAFIGIIGAVLGVPWLDSVTAFLVGILIVYTAIKIFYDAAHTLTDGFDVSKLETI
                     HDLIASVPDVKKVIDIKARMNGNKIWIDATIAVDPELNVVKSHAITEIVEQKIRNEYE
                     GAFTLVHIEPFFE"
BASE COUNT          435 a          247 c          290 g          479 t
ORIGIN      
        1 atatactgtg tacaacaagt aatggcagca agttttacat gggtacatta atacgccgga
       61 aaggaattgg aatatgacgc aaaagctgat ctacttttta tcacaaacgc atattcgaag
      121 tgccattgct gaagcttggg cgaaaagact ttcacttagc aatgtcaaat tcattagcgg
      181 ttcttggcat aaatctaaat caacaccgtt tattgcagaa gcgttgaatg agtttgcaat
      241 cgagccacct gaaagtttgt cttattcccc tagctcagaa ctactggcag atgctgatct
      301 cattgtaaca atttatgatt ctgcacatga aactgcacca aaatttccag ctaacataca
      361 agaaaaaatt atttattggg acattgatga tccggaacaa gaaatagcgt taccaaaaaa
      421 atgggcgagt tatcaagaag tatgtgataa cattgcctta tcagtaaaaa atttagagca
      481 tgtattgata gaggcttaga tttcgttgtc ccgccattcg taggcgggac ttttatgtta
      541 aaaagaaagg agtacataca taatggatgg atacaacgat ttaaaaaagg ctgaaaaagc
      601 ggcatttttg agtatatttg cctatttatt tctagcggtt ttaaaaatag ttgctgggca
      661 attaggaaac tctgatgcct tacttgcaga tggtttgaat aatacgactg atattgttgc
      721 ttctgttgcg cttttaattg gccttagaat ttctcgtatt ccacctgatg cagatcattc
      781 atacggacac cgacggactg aaactattag ctctttaatc gcatctatca ttatgtttct
      841 cgttggcgtg caagttattt ggagttcaat tgttcatatt atcgaaaaag aatttgcaac
      901 accctcgatg ttaactgctg ttgtcgcgct tttttctggt gtatttatgt atgctattta
      961 cttatataat catcgacttg cgaaaaaact tgatagccaa gctgtgcgag ctgctgcata
     1021 tgataatcgt tccgacgcat ttgttagttt aggtgcgttt atcgggatta ttggggctgt
     1081 tcttggtgtt ccttggcttg attccgtgac ggcctttttg gtcggtattt tgattgttta
     1141 tactgctatc aaaattttct atgatgctgc acataccttg acagatggtt tcgatgtttc
     1201 taagctcgaa actattcatg atttaattgc ttctgtacct gatgtcaaaa aagtaattga
     1261 tattaaagcg cgaatgaatg gaaataagat ttggatcgat gcaactatcg ctgtggatcc
     1321 tgaactaaat gtagttaaaa gtcatgcaat caccgaaatc gttgaacaaa aaattcgtaa
     1381 cgaatacgaa ggtgcgttca ctttagttca tattgaacca ttttttgaat aatattcatt
     1441 gtcaataatc g
//
LOCUS       DASDXX010000317         1449 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.319, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000317 DASDXX010000000
VERSION     DASDXX010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.319"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(107..190)
                     /locus_tag="U0280_002890"
     tRNA            complement(107..190)
                     /locus_tag="U0280_002890"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(154..156),aa:Leu,seq:caa)
     gene            complement(236..309)
                     /locus_tag="U0280_002891"
     tRNA            complement(236..309)
                     /locus_tag="U0280_002891"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(275..277),aa:Cys,seq:gca)
     gene            complement(329..400)
                     /locus_tag="U0280_002892"
     tRNA            complement(329..400)
                     /locus_tag="U0280_002892"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(366..368),aa:Gly,seq:gcc)
     gene            complement(406..477)
                     /locus_tag="U0280_002893"
     tRNA            complement(406..477)
                     /locus_tag="U0280_002893"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(443..445),aa:Gln,seq:ttg)
     gene            complement(507..579)
                     /locus_tag="U0280_002894"
     tRNA            complement(507..579)
                     /locus_tag="U0280_002894"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(544..546),aa:His,seq:gtg)
     gene            complement(595..668)
                     /locus_tag="U0280_002895"
     tRNA            complement(595..668)
                     /locus_tag="U0280_002895"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(634..636),aa:Trp,seq:cca)
     gene            complement(676..759)
                     /locus_tag="U0280_002896"
     tRNA            complement(676..759)
                     /locus_tag="U0280_002896"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(723..725),aa:Tyr,seq:gta)
     gene            complement(779..851)
                     /locus_tag="U0280_002897"
     tRNA            complement(779..851)
                     /locus_tag="U0280_002897"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(816..818),aa:Phe,seq:gaa)
     gene            complement(856..931)
                     /locus_tag="U0280_002898"
     tRNA            complement(856..931)
                     /locus_tag="U0280_002898"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(896..898),aa:Asp,seq:gtc)
     gene            complement(938..1011)
                     /locus_tag="U0280_002899"
     tRNA            complement(938..1011)
                     /locus_tag="U0280_002899"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(975..977),aa:Met,seq:cat)
     gene            complement(1033..1108)
                     /locus_tag="U0280_002900"
     tRNA            complement(1033..1108)
                     /locus_tag="U0280_002900"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1073..1075),aa:Val,seq:tac)
     gene            complement(1166..1237)
                     /locus_tag="U0280_002901"
     tRNA            complement(1166..1237)
                     /locus_tag="U0280_002901"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1202..1204),aa:Glu,seq:ttc)
     gene            complement(1271..1359)
                     /locus_tag="U0280_002902"
     tRNA            complement(1271..1359)
                     /locus_tag="U0280_002902"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1323..1325),aa:Ser,seq:gga)
     gene            complement(1366..1441)
                     /locus_tag="U0280_002903"
     tRNA            complement(1366..1441)
                     /locus_tag="U0280_002903"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1406..1408),aa:Asn,seq:gtt)
BASE COUNT          415 a          375 c          325 g          334 t
ORIGIN      
        1 gctaaattat tttttctcgt ctttatttat aacacaactt tcaagcagaa tccatctttg
       61 aaataaaaaa taccaacgaa tcgttagaaa cgttggtatc atagtatacc ggcggccggg
      121 gtcgaaccgg cacgcccttg cgggcacagg attttgagtc cagcgcgtct gccaattccg
      181 ccacgccggc gtaacaatat aataaattat aactttaaaa cattaattat gcaaatggag
      241 gcgccaaccg gatttgaacc ggtgataaag gttttgcaga cctctgcctt accacttggc
      301 tatggcgccg cacaatgttc aatttaaaag cggaagacgg ggttcgaacc cgcgaccccc
      361 accttggcaa ggtgatgttc taccgctgaa ctacttccgc attaactggg ccagctggat
      421 tcgaaccaac gcatgacgga gtcaaagtcc gttgccttac cgcttggcta tggcccaaca
      481 attatattag acttaaaaac aaaaagggcg gatgatggga atcgaaccca cgaatgcctg
      541 aaccacaatc aggtgcgtta accacttcgc cacatccgcc attattttaa tatatggcag
      601 gggcagtagg aatcgaaccc acactggagg ttttggagac ctcagttcta cctttaaact
      661 atgcccctat aaaaatggtg gaggggagtg gattcgaacc accgaacccg aaggagcgga
      721 tttacagtcc gccgcgttta gccacttcgc tacccctcca tattaaaaaa gaaaaaagtg
      781 gcttgggaca gaatcgaact gccgacacct tgagcttcaa tcaagtgctc taccaactga
      841 gctaccaagc cataatggcg gtcccgacgg gatttgaacc cgcgatctcc tgcgtgacag
      901 gcaggcatgt taacccctac accacggaac cactctattg cgggggcagg atttgaacct
      961 acgaccttcg ggttatgagc ccgacgagct accagactgc tccaccccgc gacaataata
     1021 ttataaaatt aatggtggag gttaacggga tcgaaccgct gaccctctgc ttgtaaggca
     1081 gatgctctcc cagctgagct aaacctccat aattactatt ttactctaaa aacatgaaaa
     1141 tgtctctagt aagtttaata ataaatgacc cgtacgggat tcgaacccgt gttaccgccg
     1201 tgaaagggcg gtgtcttaac cgcttgacca acgggcctaa gtgaaaatat gatgcattat
     1261 tatgtgtaaa cggagagcaa gggattcgaa cccttgagac agcttacacc gcctacacgg
     1321 tttccaaccg tgctccttcg gccactcgga cagctctcca gaaaatggct ccacaggcag
     1381 gactcgaacc tgcgaccgat cggttaacag ccgattgctc taccaactga gctactgtgg
     1441 aataataaa
//
LOCUS       DASDXX010000318         1438 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.320, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000318 DASDXX010000000
VERSION     DASDXX010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.320"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            323..796
                     /locus_tag="U0280_002904"
     CDS             323..796
                     /locus_tag="U0280_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272805.1"
                     /translation="MTFLNTLKLNLENEKKRMLSDAFMKKQEGIIVNYIVTCSKDSAI
                     GISKKAIDILLIINENTFPEWPNVDRWLSILPKYFTDSFSKSKILHSEDWLFEEWLYW
                     FEPENRFWFLGELDPVDNEHLKISIVVQEHPFPVESLEVLLMKLGTSELHEIGME"
     gene            902..1264
                     /locus_tag="U0280_002905"
     CDS             902..1264
                     /locus_tag="U0280_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272806.1"
                     /translation="MENYVSIVKIENNLSVCFYNSSEKVVAIAKKMNEINEEAYMHGY
                     NWEAFFNYYLPKYAPDVLEGMGSDPEAGMYVAYYTLSPETEARAEKLVQVITNLIENE
                     ELLYQIIENEGNNISWDN"
BASE COUNT          542 a          187 c          262 g          447 t
ORIGIN      
        1 tcaccagtct ccataggagt gtggtagctg attgcacagt aattatatac tttacgtcaa
       61 tatcaaaagc aagtccaatt aaaatggatt accttgcccc gtaaatgaca acttctgaaa
      121 ataggtaaaa ggaacaaaag atgatgtaat tagggtctag tgcatttgtg gtgaatttag
      181 gttttgatta taatgagaat ctccgtttag aggttgttct tttgaaaacg atagaagcaa
      241 ttataggtat cgactaccat atattactga aaaaagagct agattaaata aaaaaataat
      301 tctaacatca taggaggcaa ttatgacttt tttaaacacc ttaaaattaa atttggaaaa
      361 tgaaaaaaag agaatgttat ccgatgcttt tatgaaaaaa caagaaggaa tcattgtaaa
      421 ctatatagtg acttgcagta aggattctgc tattggcatt agtaaaaagg caattgatat
      481 attattgata atcaatgaaa atacatttcc tgaatggcca aatgtagata gatggctttc
      541 tattttgcca aaatatttta cggattcttt ttcaaaatca aaaatattgc atagtgaaga
      601 ttggctattt gaagagtggt tatactggtt tgaacctgaa aatagatttt ggtttttagg
      661 agaattagat cctgttgata atgagcattt gaaaataagc atagttgtac aagaacaccc
      721 ttttccagta gaatcattag aagttctact tatgaagcta ggaacaagcg aattacatga
      781 aattggtatg gaatgaggtt aaatgtactt ttaacggata tatcttttac aatagagctg
      841 aattttgtta gagtttaaaa tgaaaaaaca actaagttat aacgaaagga gctaacactt
      901 gatggaaaat tacgtgtcaa tagtaaaaat cgaaaacaat ctttccgtgt gcttttacaa
      961 cagctcggag aaagtagtag caattgctaa gaaaatgaat gagattaacg aagaagctta
     1021 tatgcatggt tacaattggg aagcattttt caactactat ttacctaaat atgctccaga
     1081 tgtcttagaa ggaatgggct ctgatccgga agcgggaatg tatgtggcgt attacacgct
     1141 atcacctgaa actgaggcac gagcagaaaa acttgttcaa gtaattacga atctcatcga
     1201 aaatgaagaa ctactttatc aaataattga aaatgaaggc aataatatta gttgggataa
     1261 ttaatccttt ttctaaaaaa tccttatcta tttgttcgta tagtattagc aagaggtgaa
     1321 gaacctgtat aatataattg acgatatttt aaagcattag atcctattgg cagatgctct
     1381 taaaacgtta aacagtaaaa taaaaaatct ctaaaacatt tgaaaccctt tgtaatta
//
LOCUS       DASDXX010000319         1435 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.321, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000319 DASDXX010000000
VERSION     DASDXX010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.321"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..464)
                     /locus_tag="U0280_002906"
     CDS             complement(<1..464)
                     /locus_tag="U0280_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM2272807.1"
                     /translation="MTYHEVPHIVIKNNSQKGGYFFEDILTEEILTDVCRKVTGTSEY
                     TVEFDNEGGYNKGRLATISYKGSKIYVSFSQAGKVEGRNYNFQSLTTALVRFYRGSRH
                     SSRICFYFLPQEGNRETEYFSFMYRVMATAGVEFINDEQYLTQTIEKFANVQ"
     gene            complement(451..>1435)
                     /locus_tag="U0280_002907"
     CDS             complement(451..>1435)
                     /locus_tag="U0280_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2272808.1"
                     /translation="IETCFKRYGKIETYQCEKISYKKYRNFKTKRENEHFEYLFFIEK
                     KDINEVTYESPLNYIGSKSKMIAEMKPLMPSEIDKFVDLFGGGFNVGINIKSQKTIYN
                     DTNWIVKDLVKSFSKYETYDYLMYIQRMIKKFGLEASNRESYLNVRNHYNSLPIADRD
                     PRLLYTVILYGFQQQIRFNSDYDFNNPVGMRWFNDRVLEKMVSFSRAIKEENFEFTSR
                     SFEDYIDEIDSNTFVYMDPPYMLTNGSYNDGKRGFGGWTTEHEQKLMDFADELNRRGI
                     KFMISYVLEHQGEVNDRMKDWLEYRLYKLINLNPIPGRKRKEVVIINYDLS"
BASE COUNT          447 a          275 c          171 g          542 t
ORIGIN      
        1 tcctgaacat ttgcaaattt ttcaatcgtt tgtgttaaat actgttcatc attaataaat
       61 tcaacacctg ctgtagccat caccctatac ataaaagaaa aatattcagt ctctctattt
      121 ccttcttggg ggagaaaata gaagcaaatt ctactactat gcctagatcc tctataaaac
      181 ctaactagag cagttgttaa actttgaaag ttataatttc gtccttcaac ttttcctgct
      241 tgagagaaag acacgtatat cttactacct ttatatgaaa tagtagctag tcttccttta
      301 ttatatcctc cttcattatc aaattcgact gtatattcgg atgtacctgt taccttccta
      361 caaacatctg ttaaaatttc ttctgtcaaa atatcctcga aaaaataacc acctttttga
      421 gagttatttt taataacaat atggggaact tcatgataag tcatagttta ttattacaac
      481 ctcctttctt tttcttccag gaatgggatt taagttaatt aatttataaa gcctatattc
      541 taaccagtct ttcattcgat cgtttacttc tccttgatgc tctagtacat aagaaatcat
      601 aaattttata cctcttctat ttaactcatc tgcaaaatcc ataagttttt gttcatgttc
      661 tgttgtccaa ccaccgaaac ctctttttcc atcattgtaa gatccgttag ttaacatgta
      721 tggggggtcc atatagacga aggtatttga atctatctca tcaatgtagt cttcgaaact
      781 acggcttgtg aattcaaaat tctcctcttt aatagctctt gaaaaactca ccattttttc
      841 tagaacccta tcgttaaacc atctcattcc aacaggatta ttaaaatcat aatcactatt
      901 aaatcgaatc tgttgctgaa acccatataa aataacggta tacaatagac gtggatctct
      961 gtcagcgata ggtaatgaat tataatgatt tcgtacattt aaataacttt ctctgttgga
     1021 tgcttccagt ccaaattttt taatcattct ttggatatac attaaataat catatgtctc
     1081 atatttactg aacgacttta ccaagtcttt tacaatccaa ttagtatcat tataaattgt
     1141 tttctggctt ttaatattaa tgccaacatt aaaaccaccg ccaaacaagt ctacaaattt
     1201 atctatttct gatggcatta aaggcttcat ttctgctatc atcttggatt tactaccaat
     1261 gtagtttaat ggcgattcat aggtaacttc attaatatcc ttcttctcaa taaagaatag
     1321 gtattcaaag tgttcgtttt ccctttttgt tttaaaatta cgatactttt tatatgaaat
     1381 tttctcacat tgatatgtct ctattttacc atacctttta aagcaagttt ctata
//
LOCUS       DASDXX010000320         1426 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.322, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000320 DASDXX010000000
VERSION     DASDXX010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.322"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            29..>1426
                     /locus_tag="U0280_002908"
     CDS             29..>1426
                     /locus_tag="U0280_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2272809.1"
                     /translation="MKKKFSIVIISVLLLGYLAPFDTLLVGADETTVTEDTTVKTAET
                     ETATEATESESGSDNEKAEEPKEAEASKETTEKEEKAKTKEPASNIKTEINTDKSQLK
                     QTNLKAVVPAGSTYNSLFPDDNLAKKLAVIITGNAAATGNESVDSAALLAISQLDLSG
                     ETGNDPTDISNIEGLQYLENLTSLNLSENNISDLAPIKDLVNLVSLNLSSNRTLVNLS
                     GVEGLVNLQELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELE
                     TFYLQENDLTDLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLETL
                     GDISGLSELEMIQLSGCSKLKEITSLKDLPNLVNITADSCAIEDLGTLNNLPKLQTLI
                     LSDNKDLTNINAITDMPQLKTLALDGCGITSIGTLDNLPKLEKLDLKENQLTSISEIN
                     DLPRLSYLDVSVNYLT"
BASE COUNT          542 a          223 c          278 g          383 t
ORIGIN      
        1 aattaaaaga tagaatagag ggaaagtctt gaaaaagaaa tttagtatag ttattatcag
       61 cgtattgtta cttggttatt tagcgccttt tgatactcta ttagtaggtg cagatgaaac
      121 cactgtcacc gaagatacga cagtgaaaac ggcagaaaca gaaactgcta ctgaagctac
      181 agaaagcgaa tctggttcag acaatgaaaa ggcagaagag ccaaaagaag cagaagcaag
      241 caaagaaacg acagaaaaag aggaaaaagc gaaaacaaaa gaaccggctt ctaatattaa
      301 aacagaaatt aatacagaca aaagtcagtt gaaacaaact aatttaaaag cagtagtacc
      361 agcaggaagc acatataatt ctttgtttcc agacgacaat cttgctaaaa aattagccgt
      421 gattatcaca ggaaatgcgg ctgcaacagg taatgaatca gtggatagtg cagctctttt
      481 agcaataagc caacttgatt tgagtgggga aacgggcaat gacccaacgg atatttccaa
      541 tattgaagga ttacaatatt tagagaattt aacgagcctg aatttaagtg agaataatat
      601 atctgacttg gccccaatta aagatttggt gaacctggtt tcacttaacc tttcttccaa
      661 tcgaacatta gtaaatcttt caggggtgga gggtttagtt aatttgcaag aacttaatgt
      721 ctctgcaaat aaggcgttag aagatatttc acaagttgca gcattaccag tgttaaaaga
      781 aattagtgcg caaggctgta atattaaaac attggaatta gataatccag ctggcgctat
      841 tttgccagaa ctagaaacat tttacttgca agaaaatgat ttaaccgact taacttcatt
      901 agcaaaactt ccaaaactaa agaatctcta tattaaaggg aatgcttctt taaaaagttt
      961 agcgacatta aaaggggcga cgaagcttca attgattgat gcgagtaact gtaccgattt
     1021 agaaacgctt ggagatatta gcgggctttc ggaactcgaa atgattcaat taagtggttg
     1081 tagtaaactg aaagaaatca caagcttgaa ggacttgcct aatttggtga atattacggc
     1141 agatagctgt gcgattgaag atttaggaac actgaataat ttaccgaaat tacagacatt
     1201 aattctctca gataataaag atttaaccaa tattaatgca attaccgata tgccacaatt
     1261 aaaaacatta gccttggatg gctgcggaat tacatctatt ggaacgcttg ataaccttcc
     1321 taaattagaa aaattagatc tcaaggaaaa tcaactaact agtataagtg aaataaacga
     1381 cttacctcga ttaagctatt tagatgtaag tgtaaattat cttaca
//
LOCUS       DASDXX010000321         1416 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.323, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000321 DASDXX010000000
VERSION     DASDXX010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.323"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..355
                     /locus_tag="U0280_002909"
     CDS             <1..355
                     /locus_tag="U0280_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase SNF2"
                     /protein_id="HEM2272810.1"
                     /translation="ETTIIFCKYRRSEEALQQAFPNVKITTFAKSSYGLNLQFYNQII
                     YFDKTFDYSQRDQSERRIYRTGQTQDCYYHDLSGNVGLDSLIDTNISKKTSLLQEFKK
                     ELSQKNSFEVIMDAF"
     gene            345..>1416
                     /locus_tag="U0280_002910"
     CDS             345..>1416
                     /locus_tag="U0280_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HEM2272811.1"
                     /translation="MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDY
                     MRKNNIRKKIYVYHLDYEGQYSATTDFVTEMLTTNLDIIEPLWCCLPIAAQSAVSMFT
                     DHWKPWEKTKQNIWVRDMPTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNA
                     QKTIALIGIRQQESLNRYNAIHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVA
                     NAKFNWSYNKIYDLFYHAGLTVHEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVN
                     GANFTAIYGGTSAMAWKEIKLPKNHTWKSYLEFLLTTLPSYTRERYLKKFKTSITYWT
                     EKGGALKVEIVEELKNLDIQADF"
BASE COUNT          500 a          250 c          246 g          420 t
ORIGIN      
        1 agaaacaacg attatttttt gcaaatacag acgttcagaa gaggcattgc agcaagcatt
       61 tccaaatgta aaaattacta cttttgccaa atcttcttac ggactcaatt tgcaatttta
      121 taatcaaatt atttattttg ataaaacgtt tgattattct cagcgtgatc aatcagaaag
      181 gcggatttac agaactgggc aaacacaaga ctgctactat catgatttaa gcggtaatgt
      241 cggtctggat tctcttattg atacaaatat ttctaagaaa acaagcttat tgcaagaatt
      301 taaaaaagaa ctatcacaaa aaaattcttt tgaggtgata atggatgctt tctagaacag
      361 tctttgatgc ttcccaagaa agaatggaag cgattttttc tgaattcgat aatattattg
      421 tgtcgttttc gggtggtaaa gatagcgcag taatgctcca tctcatgatt gactacatgc
      481 ggaaaaataa tattcgcaag aaaatatatg tatatcattt agattatgaa ggtcaataca
      541 gcgctacaac tgattttgtt actgaaatgc ttacaactaa tttagatatc atcgaaccac
      601 tttggtgttg tcttcccatc gcggcacaat cagctgtttc gatgttcacc gaccactgga
      661 aaccgtggga aaagaccaag caaaacatct gggttagaga tatgcccacc tttccacacg
      721 tgattaatga agacaatgcc ccgtttgact ttgattttga aaacctttgg gattatgaat
      781 ttaataaaaa aataattaac tggttacata ctaaaaataa cgcccaaaaa accattgctt
      841 tgattggtat aagacaacaa gaatctctta atcgctataa cgcaattcat aaaaaagaac
      901 gaatgtataa aacatacaat tggacgaccg aaatttccaa aaacatttac aacgcctatc
      961 caattcacga ttggcaagta gaagatatat gggtcgcaaa tgcaaagttc aattggtctt
     1021 ataataaaat ttatgattta ttttatcatg ctggcctaac tgtgcacgag atgcgtgtcg
     1081 ccagtccttt taacgatgct gctacagaaa gtcttaaact gtacagggtc atcgaacctg
     1141 cgctttggtc caaattagtc ggccgggtga atggcgccaa tttcactgcc atatacggtg
     1201 gcacttccgc aatggcttgg aaagaaatta aactacctaa aaatcatact tggaaatcat
     1261 atttggaatt tttactcaca actttaccaa gttacactag agaacgctat ttaaaaaaat
     1321 tcaaaacaag tattacctat tggaccgaaa aaggtggtgc tttaaaagta gaaattgtag
     1381 aagaattaaa aaatttagat atacaagcag acttcc
//
LOCUS       DASDXX010000322         1402 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.324, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000322 DASDXX010000000
VERSION     DASDXX010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.324"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            105..599
                     /locus_tag="U0280_002911"
     CDS             105..599
                     /locus_tag="U0280_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5067 domain-containing protein"
                     /protein_id="HEM2272812.1"
                     /translation="MKKLKSVLLLMGIVTFALALTACGGTEDKASTEKTETAKADTKK
                     KANPNELGDYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENISFMVAIDQQAFQNGT
                     QLETTVSADASMGGSEKDVQPGGTLEVTELYKLQDTQNKVDVEAKELISFSKNAVKKS
                     FELK"
     gene            complement(638..>1402)
                     /locus_tag="U0280_002912"
     CDS             complement(638..>1402)
                     /locus_tag="U0280_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM2272813.1"
                     /translation="TLYEPNTKIIAHRGDTMNAVENTVEAIESAAEAGADYSEIDIQE
                     TKDHQFVVFHDMTLRRLAGSSKRVADMTLNELQQTKVKSGDYSSHIASFDEIIKTAKR
                     NKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKIEQADPTLET
                     GIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKLMQMYLRK
                     NVDGIITNYPKKAIELRESFNENDSLRSRIENRLGF"
BASE COUNT          462 a          260 c          235 g          445 t
ORIGIN      
        1 tatttataat gaaatctttt cctagtccta tgcccactgc ataggacttt tattctctcc
       61 acatggtcta atagagacag ataaaaaatg aaggagagaa gaaaatgaaa aaattgaaaa
      121 gcgttttact attaatgggg attgttactt ttgccctagc actaactgca tgtggtggga
      181 ctgaggataa agcaagtaca gaaaaaacag aaacagctaa agccgatacg aaaaagaaag
      241 caaatccaaa tgaacttgga gattataaag tagaaattct tagttcggaa gtagttaagg
      301 attttgaagg taacaatgcc atcgcaatta aaactaaatt cacaaataac agcaaagaaa
      361 acatttcttt tatggtagct attgatcaac aagcttttca aaatggcact cagttagaaa
      421 caaccgtatc agctgatgct agtatgggcg gctctgaaaa agacgtacaa cctggtggaa
      481 ctttagaagt aactgagctt tataaactac aagatacaca aaataaagtc gatgtagaag
      541 caaaagaatt aattagtttc agcaaaaacg ctgttaaaaa atcatttgaa ctaaaataaa
      601 aatcagccgc aaacagtgct tgtttgcggc tttttattta aaagcctaac ctattttcaa
      661 tacgacttcg caaagaatca ttttcattaa aagattccct aagctctatc gcctttttag
      721 gataattggt aatgattcca tctacattct ttcgcaaata catttgcatt agtttttctt
      781 tatttaccgt ccaaacaaac acccttttat tattttgtct ggcttgtgta agtaatcgtt
      841 tattaataga aaaatcttct aaaacaataa aatcggcaga tgtttttggt aagtttccaa
      901 tattaagcgc taatatgatg ccagtttcaa gcgtagggtc agcttgttct attttttcga
      961 taactggttg gtccaacgat tggactagat atttatcggt tactttttct ttctttaaca
     1021 atgtgacaag tcgttccacc atatcgctag attccccgcc atgcaacttc acttccacga
     1081 gtaaatctat cttattcctt ttcgccgtct taataatttc atcgaaagaa gctatatgag
     1141 acgaatagtc gccactcttc actttagttt gctgcaactc gtttaaagtc atatctgcta
     1201 ctcgtttaga actgccagca agtcttctca gtgtcatatc atggaaaacg acaaactgat
     1261 gatctttggt ttcttgaata tcaatttcgc tgtaatctgc cccagcctca gcagctgatt
     1321 caatggcttc caccgtattt tcaacagcat tcattgtatc acctcgatgg gcgattattt
     1381 tcgtgttagg ttcatataaa gt
//
LOCUS       DASDXX010000323         1384 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.325, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000323 DASDXX010000000
VERSION     DASDXX010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1384
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.325"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            6..>1384
                     /locus_tag="U0280_002913"
     CDS             6..>1384
                     /locus_tag="U0280_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEM2272814.1"
                     /translation="MTKEYYFIKPELSSPETKQENIDSWLKTQDKTFYDAQIAQERDY
                     CFWCNIVETAKPNSRTSYTSMAYTLNEPNMLNSAGKTSFILSEEEVLYIHTLSVVRDG
                     KVIDKLDDINVKVLDYVRDENQASFNDEKKVTVLIRDLHLNDIFIVETTIERKYEESS
                     IRNDFFRWIYSAPNSYWAYGKYRFELKNETEKKLEANFHYFRDEAGAILEKDKVMVEH
                     NESYTIEKEDYIGEDAKELEITPFVDFVTEQSYPQITKTISDIYQKFYQVNLAEFAAD
                     IVAELDELPTLDHKIKHAIDFVQKEVYYLYNETEMDGHEPQAAEVTYKTKQGDCKAKT
                     VLLKVILDYLDVNSELILVNYGSDVFLPVYTPSPFNFNHAILKITHNNQVYFIDATMS
                     SDQGFLANRQKNSFMYYLEIKSGTELQKQEPFQDEIPSVEEVVYCDVKDNAAEITFER
                     KLRGGMANGS"
BASE COUNT          506 a          205 c          263 g          410 t
ORIGIN      
        1 acacaatgac aaaagaatat tattttataa aaccagagtt aagttctcct gaaacaaaac
       61 aagaaaacat tgattcttgg ttaaagacac aagataaaac tttttacgat gcacaaattg
      121 cgcaagaacg tgattactgc ttctggtgta atattgtaga aacggctaaa ccaaattcac
      181 gcacgagtta tacttcgatg gcatatacat taaatgaacc caacatgctc aattcagccg
      241 gcaagacgag ttttatttta tcagaagaag aggtattata cattcacact ttatctgttg
      301 ttcgtgatgg taaagtgatt gataaattgg atgacattaa tgtaaaagta cttgactatg
      361 ttcgtgatga aaatcaagcg agttttaatg atgagaaaaa agtgacagta cttattcgtg
      421 acttacattt aaatgatatc tttattgtgg agacgacaat tgagcgtaaa tatgaagaaa
      481 gcagcattcg caatgacttt ttccgctgga tttattccgc gccaaattcc tactgggctt
      541 atggaaaata ccgttttgaa ttaaaaaatg aaacggagaa aaaattagaa gcgaatttcc
      601 attatttccg agatgaagca ggcgccatct tagaaaaaga caaagttatg gttgaacata
      661 acgaatctta tacaatcgaa aaagaagatt atattggaga agacgcaaaa gaacttgaaa
      721 ttacaccgtt tgttgatttt gttacggagc agtcgtatcc gcaaattaca aaaacaatca
      781 gtgacattta tcaaaaattc tatcaagtaa accttgctga atttgcggct gatatagtgg
      841 ctgaactaga tgagttaccg acattagacc ataaaattaa gcatgccatc gattttgttc
      901 aaaaagaagt atactattta tataatgaaa cagagatgga tggtcatgaa cctcaagctg
      961 ctgaagtgac ttataaaacg aaacaaggcg attgtaaggc gaaaacagtt cttttgaaag
     1021 tgattttaga ttatttagac gtgaattcag agcttatttt ggttaactat ggtagtgatg
     1081 tattcctacc agtttataca ccgtcaccat tcaactttaa ccatgcgatt ttaaaaataa
     1141 cgcataataa tcaagtctat tttattgatg ctacaatgag tagtgatcaa ggatttttgg
     1201 ctaatcgtca aaaaaatagt tttatgtatt atttggaaat taaatcaggt acggaattgc
     1261 aaaaacaaga gccatttcaa gatgaaattc catctgtgga agaagtggtt tactgcgatg
     1321 ttaaagataa tgcggctgaa attacttttg aaagaaaatt acgcggtgga atggcaaacg
     1381 ggtc
//
LOCUS       DASDXX010000324         1377 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.326, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000324 DASDXX010000000
VERSION     DASDXX010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.326"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..312
                     /locus_tag="U0280_002914"
     CDS             <1..312
                     /locus_tag="U0280_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272815.1"
                     /translation="KRIRILCYEENDDDFTLDYDLTSKKVQNKVVINYTVDELLSVGD
                     NFYARYQNHIYKVDESMEITKEIIIDKKVYDEAYAISTGYSEVVLESENEFNIVQLSK
                     L"
     gene            449..904
                     /locus_tag="U0280_002915"
     CDS             449..904
                     /locus_tag="U0280_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HEM2272816.1"
                     /translation="MTTNYHYNADDDVIALTEEAGKVVAEYAYDAWGNVLKNTASTEE
                     AKANSYGYKGYTYDKEIKQYYLMARYYEPEQVAFTAVDPDPGDEDDPQTMNGYNYASN
                     NPVMLADPDVLWAGVLFRFAAKGGKTAWKYAKKGAKKSFKEHEKMVEGI"
     gene            986..1198
                     /locus_tag="U0280_002916"
     CDS             986..1198
                     /locus_tag="U0280_002916"
                     /inference="COORDINATES: protein motif:HMM:NF026872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272817.1"
                     /translation="MRKKHDWNSITDGSWGQVRNLINRTMRNGKESAYGSARQKTMKY
                     GKRTIVVTFKRVEGKIRISDAWVKTK"
BASE COUNT          533 a          167 c          319 g          358 t
ORIGIN      
        1 aaaaggatac ggatactgtg ttatgaagaa aatgatgatg actttacttt agactatgat
       61 ttaacctcga aaaaagttca gaataaagtc gtaataaatt atactgtgga cgaattgttg
      121 agtgtgggag ataactttta cgctagatat cagaatcata tttataaagt agatgaaagt
      181 atggaaatta cgaaagaaat cattatagat aaaaaagtat atgatgaggc atatgcaata
      241 agtaccggat atagtgaagt agttttagaa agtgaaaatg aattcaacat tgtccagctt
      301 tctaaacttt gaagaaggcc tatagagaag aattagcatt aaaaataacc tgaaaatgag
      361 ccctccgttt ttatagggag ggcttatttt aaaaatgaaa atcaaatcag gaacgttaaa
      421 tactataaaa taaataatca ttgatggcgt gacgacgaat tatcattaca atgcggatga
      481 cgacgtaatc gcgctcacgg aggaagcagg caaggttgtc gcagaatatg cgtatgatgc
      541 ttggggaaat gtgctgaaaa atactgcctc cacggaagaa gccaaagcca attcgtatgg
      601 ttataaagga tatacgtatg acaaggaaat taaacaatat tatttgatgg cgcggtatta
      661 cgaaccagaa caagtcgcat ttacagctgt tgacccagac ccaggggatg aagacgatcc
      721 gcaaacgatg aatggatata attatgcgag taataatcca gtgatgttag cagatccaga
      781 tgtactatgg gcaggagtat tgtttaggtt tgccgcaaaa ggcggaaaaa cagcttggaa
      841 gtacgcgaaa aaaggcgcaa aaaaaagttt caaagagcat gaaaaaatgg tggaagggat
      901 ttagattatc tgcagctaag aagaaatctg taaaagaatc aacaaatgct gtaaattcta
      961 ttacagaaaa aaatcgaaat atatattgag aaaaaaacat gattggaatt cgattacgga
     1021 tggtagttgg gggcaggtga gaaatcttat aaatcgaacg atgcggaatg gtaaggaatc
     1081 agcctatgga agtgctaggc agaaaacgat gaaatatggt aaaaggacta ttgtagtgac
     1141 gtttaaacga gttgaaggga aaattagaat tagtgatgca tgggttaaaa ctaaatagaa
     1201 aactaacgag ggggaaaatg aatcatgtta aatcttcaat gggaagattt agattgctta
     1261 gaggtagagg gtgatttgga aaaaatatta gactatagct ataatgcatg gaatttggac
     1321 cagaggaata cccgttattt tgtaagaacc tttttcataa aatggtattt gataatt
//
LOCUS       DASDXX010000325         1372 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.327, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000325 DASDXX010000000
VERSION     DASDXX010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.327"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1372
                     /gene="hly"
                     /locus_tag="U0280_002917"
     CDS             <1..>1372
                     /gene="hly"
                     /locus_tag="U0280_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cholesterol-dependent cytolysin listeriolysin O"
                     /protein_id="HEM2272818.1"
                     /translation="EIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEK
                     KKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGM
                     TNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIA
                     KFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKE
                     QLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELT
                     NIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLK
                     DNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQHK
                     NWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNI
                     SIWGTTL"
BASE COUNT          514 a          233 c          262 g          363 t
ORIGIN      
        1 atgaaatcga taagtatata caaggattgg attacaataa aaacaatgta ttagtatacc
       61 acggagatgc agtgacaaat gtgccgccaa gaaaaggtta taaagatgga aatgaatata
      121 tcgttgtgga gaaaaagaag aaatccatca atcaaaataa tgcagatatc caagttgtga
      181 atgcaatttc gagcctaaca tatccaggtg ctctcgtgaa agcgaattcg gaattagtag
      241 aaaatcaacc cgatgttctt cctgtcaaac gtgattcatt aacacttagc attgatttgc
      301 caggaatgac taatcaagac aataaaattg ttgtaaaaaa tgctactaaa tcgaacgtta
      361 acaacgcagt aaatacatta gtggaaagat ggaatgaaaa atatgctcaa gcttatccaa
      421 atgtaagtgc aaaaattgat tatgatgacg aaatggctta cagtgaatca caattaattg
      481 caaaatttgg tacggcattt aaagctgtaa ataatagctt gaatgtaaac ttcggcgcaa
      541 tcagtgaagg gaaaatgcaa gaagaagtca ttagttttaa acaaatttac tataacgtga
      601 atgttaatga acctacaaga ccttccagat ttttcggcaa agctgttact aaagagcagt
      661 tgcaagcgct tggagtgaat gcagaaaatc ctcctgcata tatctcaagt gtggcatatg
      721 gccgtcaagt ttatttgaaa ttatcaacta attcccatag taccaaagta aaagctgctt
      781 ttgacgctgc cgtaagtggg aaatctgtct caggtgatgt agaactgaca aatatcatca
      841 aaaattcttc cttcaaagcc gtaatttacg gtggctccgc aaaagatgaa gttcaaatca
      901 tcgacggtaa cctcggagac ttacgagata ttttgaaaaa aggtgctact tttaaccggg
      961 aaacaccagg agttcccatt gcctatacaa caaacttctt aaaagacaat gaattagctg
     1021 ttattaaaaa caactcagaa tatattgaaa caacttcaaa agcttataca gatggaaaaa
     1081 tcaacatcga tcactctgga ggatacgttg ctcaattcaa catctcttgg gatgaaataa
     1141 attatgatcc tgaaggtaac gaaattgttc aacataaaaa ctggagcgaa aacaataaaa
     1201 gtaagctagc tcatttcaca tcgtccatct atttgccagg taacgcaaga aatattaatg
     1261 tttacgctaa agaatgcact ggtttagctt gggaatggtg gagaacggta attgatgacc
     1321 ggaacctacc gcttgtgaaa aatagaaata tctccatctg gggcactaca ct
//
LOCUS       DASDXX010000326         1346 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.328, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000326 DASDXX010000000
VERSION     DASDXX010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.328"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>1346)
                     /locus_tag="U0280_002918"
     CDS             complement(<1..>1346)
                     /locus_tag="U0280_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HEM2272819.1"
                     /translation="IIILVTLVIGNIMFFTFISNTLSRDFLFKDQTEVQFKYKDDFQV
                     LEVNNSIKQFSEANNINIAQYTFLDERDLNIYASNPQYSPNIKLEKGDYPDKNRFLVN
                     RESGDEKQSGVIYHPSKYWSLKVYDFGQIKNVGLSDTFYVSGLDNQDTYQAFLKEFEQ
                     YGEITTKSVDVSWWKYINIPLLMTLLLCFAILFVFTYYYLRYSKQRLLVNRIWGNSEL
                     VTLMSLFNKTIIFTLFSVLAILITFVSIVLANGLATYLVEIVWKLLLFNVLLFIFILF
                     PMYFFGLLRIKKIDQAKSDQRMQSSRQHLAINLVIKFVLLCLFIGTFIASYQSLQTLN
                     TRLANIDVWEATKDIFKVKVGVLPEGIQDNLKADKELNNNLSAFYEEGTSKKEMFLMY
                     SNNFQRSETNTFFYETYLKKDSEINSPEGNSVEIDFNYLKLNPIKSIKGQNVEKEA"
BASE COUNT          484 a          243 c          167 g          452 t
ORIGIN      
        1 cgcttctttt tccacgttct gaccttttat acttttaatc ggatttaatt ttaagtaatt
       61 aaaatcaatt tctacgctat taccctcagg tgagtttatt tcagagtcct ttttcaaata
      121 agtttcatag aaaaaagtat tagtttcact tcgctgaaaa ttattcgaat acattaaaaa
      181 catctctttc ttagatgtac cttcttcata aaaagcactt aaattgttgt ttagctcttt
      241 atcagctttt aagttatctt gaatcccctc aggtaaaacc cctactttta ctttaaaaat
      301 gtcctttgta gcttcccata catcaatatt agctagtctt gtatttaatg tctgaagtga
      361 ttgataagaa gcaataaaag tacctataaa taagcagagc agcacaaatt taataactag
      421 attgattgcc aaatgctgtc ttgatgattg catacgctgg tctgattttg cttgatcaat
      481 tttctttatt ctaagtaatc caaagaaata cattggaaac agaataaaaa taaataaaag
      541 tacattaaat aaaagcaact tccacactat ctccactaag tacgtggcta gcccatttgc
      601 taaaacaata ctaacaaaag ttatcagaat tgctaacaca ctaaacaaag taaatattat
      661 agttttattg aacaaagaca ttaatgtaac taattcagaa ttcccccata tacgattaac
      721 taataaccgt tgtttagagt atcttaaata gtaatatgta aaaacaaaca aaatagcaaa
      781 acacaaaagc aaagtcataa gtaacgggat attaatatat ttccaccagc tcacatcaac
      841 acttttcgta gttatttccc cgtactgttc aaattccttt aaaaaagcct gatacgtatc
      901 ctggttatct aagccgctta cataaaaagt atcacttaga cccacatttt taatctgtcc
      961 aaagtcataa acctttaaag accaatactt agaaggatga taaatcacac ccgattgttt
     1021 ttcatcgcca ctttcccgat tcaccaaaaa ccgattttta tcgggataat ctcctttttc
     1081 aagctttata tttggtgaat actggggatt agaggcataa atattcaaat cgcgttcatc
     1141 taaaaatgta tactgcgcta tgttaatatt gttcgcttct gaaaattgct ttatagaatt
     1201 attaacttct aaaacctgaa agtcatcttt atatttaaac tgcacttctg tctggtcttt
     1261 aaaaagaaaa tcacgcgaca aagtattact aataaaagta aaaaacatta tattaccaat
     1321 gacaagtgtt actaatatga taatgg
//
LOCUS       DASDXX010000327         1325 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.329, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000327 DASDXX010000000
VERSION     DASDXX010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1325
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.329"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(103..1056)
                     /gene="plcA"
                     /locus_tag="U0280_002919"
     CDS             complement(103..1056)
                     /gene="plcA"
                     /locus_tag="U0280_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase C"
                     /protein_id="HEM2272820.1"
                     /translation="MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVT
                     TKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRY
                     IDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYR
                     IQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKFGMQFG
                     ASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALN
                     NKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN"
BASE COUNT          380 a          188 c          274 g          483 t
ORIGIN      
        1 aaaacggatt tatttagatg ttaaaattga aatagggtta gtatatggtt ccgatggttg
       61 ctcggagata tactaaccct ttttttgtag gaataatata tgttagttga atttattgtt
      121 ttttatgatg tttttgattg tttgtttttc ggggaagtcc atgattagaa tgcctaatcc
      181 tcgaactttt tccgatgtta agttgagtac gaactgctct actttgttgt ttaatgctgc
      241 agcatactga cgaggtgtga atgttaatga agtggcacta atatggttaa gaaacagttt
      301 gttgtccgct ttagaagctt gataagcagt ctggacaatc tctttgaatt ttgttttcac
      361 actcggacca ttgtagtcat cttgaattac ttggttggat gcgccgaact gcatgccgaa
      421 tttgtgtgaa ttaatgacta atggcttttt tgtgtggttc tctgaaagta ataatatttt
      481 tccgcggaca tcttttaatg tagggatttt attgctcgtg tcagttctgg gagtagtgta
      541 aaaataatct ttgtaaatgt tgattaatgg ttggatccga taatcaaaac tatcgttgct
      601 gttttgctcg tcttttaaac gcataataat ggtttctttt ggatttttct ttaaaaattg
      661 agtaatcgtt tctaatacac ctgaaagtga tgcatttaaa aaaattggcc catggtaaat
      721 tttgagattg tcttttgctc taatatcgat gtaccgtatt cctgcttcta gttgttggta
      781 caatgacatc gtttgtgttt gagccagtgg tttggttaat gtccacgtca tgtctccgtt
      841 atagctcatc gtatcatgtg tacctggtat agagagtgct gctaggctcg ttgtgtcagg
      901 tagagcggac atccattgct ttgtagttac agagttcttt attggcttat tccagttatt
      961 aagcgaatat gcttttccac ctaatgggaa agtaaaaaag cataaaataa aacagagtac
     1021 taaaactaat gtgcgttgca aataattctt atacaaaatg gccccctcct ttgattagta
     1081 tattcctatc ttaaagttac ttttatgtcg aggcattaac atttgttaac gacgataaag
     1141 ggacagcggg actagaataa agctataaag caagcatata atattgcgtt tcatctttag
     1201 aagcgaattt cgccaatatt ataattatca aaagagagga ggggctaaac agtatttggc
     1261 attattaggt taaaaaatgt agaaggagag tgaaacccat gaaaaaaata atgctagttt
     1321 ttatt
//
LOCUS       DASDXX010000328         1306 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.330, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000328 DASDXX010000000
VERSION     DASDXX010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.330"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            35..931
                     /gene="murB"
                     /locus_tag="U0280_002920"
     CDS             35..931
                     /gene="murB"
                     /locus_tag="U0280_002920"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEM2272821.1"
                     /translation="MNNLQTQFPHIAIKLNEPLSKYTYTKTGGAADVFVMPKTIEETQ
                     EVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIIAMSGAKLI
                     DTAKFALDESLSGLEFACGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGELKKL
                     KRSELKAAYRFSTIAEKNYIVLDATFSLALEEKNLIQAKMDELTAAREAKQPLEYPSC
                     GSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLKHAGFIVNIGGATATDYMNLIAYVQ
                     QTVREKFDVELETEVKIIGEDK"
     gene            948..>1306
                     /locus_tag="U0280_002921"
     CDS             948..>1306
                     /locus_tag="U0280_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2272822.1"
                     /translation="MKELSSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSY
                     LITRLENFILRRISIYRQIIVLLLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFL
                     TTDSNNDFINYIVSLAN"
BASE COUNT          439 a          227 c          245 g          395 t
ORIGIN      
        1 ttaaactaca accatgaaag gtttgaaata aataatgaat aacttacaaa cacagtttcc
       61 gcatatagcg attaaattaa atgaaccgtt gtctaagtat acctatacaa aaacaggcgg
      121 cgcggcagac gtattcgtta tgccaaaaac aatagaagag acgcaagaag tggtggccta
      181 ctgtcaccaa aataaaatcc ctcttactat tctcggaaat ggttccaatc taatcattaa
      241 agacggcgga attcgcggcg ttattttaca tcttgattta ctacaaacca ttgaaagaaa
      301 caatacccaa attatcgcca tgagtggtgc caaactcatt gatacagcaa aattcgcttt
      361 agatgaaagc ttaagcggac ttgaatttgc ttgtggtatt cccggatcta ttgggggagc
      421 actacatatg aatgcaggag catacggagg cgaaattagt gatgttttag aagctgcaac
      481 cgtgctgaca caaacaggtg aattaaaaaa actaaaacgt tcagaactaa aagcagctta
      541 tcgctttagt actattgcag aaaaaaatta catcgtatta gatgctactt tttctttggc
      601 cttagaagaa aaaaacctaa ttcaagcaaa aatggatgaa cttactgcag cacgtgaagc
      661 taaacaacca ttagagtatc catcttgtgg tagtgtattc aaacgtccac caggtcactt
      721 tgcgggtaaa ttaattcaag atagtggctt gcaaggccat attattggcg gcgcgcaagt
      781 ttctttaaaa catgctggat ttatcgttaa tatcggtggg gcaactgcga ctgactacat
      841 gaatttaatt gcttacgtcc aacaaacggt tcgcgagaaa tttgatgtag agttagaaac
      901 agaagttaaa atcataggcg aagataaata gaggagggca tccatttttg aaagagctta
      961 gttcattttt acaaaatcgt agtgtgcggc gagttggcgt atttatatta attgccttcg
     1021 ttttatactt attaagaagc caaatgaata ttattttact aacattcatt ttttcttacc
     1081 ttattacacg tttagagaat tttattttac ggagaatctc catttatcgg caaattattg
     1141 tgttgttact ttatgtttta atcgccgcag ttatcatctt cgtatttgtt aagtacattc
     1201 ctgtcttagc ggatcaaata aatcaactag tgaaattcgg aaatactttc ttaacgacag
     1261 atagcaacaa tgacttcatt aattacattg ttagtttagc gaatca
//
LOCUS       DASDXX010000329         1278 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.331, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000329 DASDXX010000000
VERSION     DASDXX010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.331"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..385)
                     /locus_tag="U0280_002922"
     CDS             complement(<1..385)
                     /locus_tag="U0280_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HEM2272823.1"
                     /translation="MRKAERLNDMMLFLNDKNSFQLSDIMAKYGVSRSTAIRDIQSLE
                     EIGMPIYSERGRNGHYRVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEK
                     LKTKFERCLSAEKIEMLRKTEEVFSL"
     gene            480..1097
                     /locus_tag="U0280_002923"
     CDS             480..1097
                     /locus_tag="U0280_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type 1 glutamine amidotransferase-like
                     domain-containing protein"
                     /protein_id="HEM2272824.1"
                     /translation="MKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVVFY
                     VEAGKKALEDLGLIVEELDVAAENLEEITMTLKKNDFIYVTGGNTFFLLQELKRTGAD
                     KLILKEIAKGKLYIGESAGAVITSPNISYIQSMDSVKKATNLTNYDALNLVDFYTLPH
                     YNNTPFKKITQQIIADYADDLKIFPISNCETIFVQGNVVTSKGIL"
BASE COUNT          441 a          218 c          205 g          414 t
ORIGIN      
        1 cgagactaaa tacttcttct gtttttcgaa gcatttcgat tttttcagct gaaagacaac
       61 gttcaaattt cgtttttaat ttttccacac ttaaatgaaa aggtgttgtt tcataggctt
      121 ttaaggtaag catcgaaaaa tagagcgcaa atacctcatc gatattaaaa acaatgggcg
      181 agagtagccg attacgaagc acccgataat gaccatttcg tccccgttcc gaatatatcg
      241 gcatgcctat ttcttccaaa gactgtatat ctcgaatagc agtactgcgg gaaacgccat
      301 attttgccat tatgtcgctt aattgaaacg aatttttatc atttaaaaac aacatcatat
      361 catttaatcg ctctgctttt ctcatcgcca tctcttttct tttttcagat taaaaggtgt
      421 cactaattga tacctttaac cattatacta taattagaaa ccaaaggagc taaaaaatga
      481 tgaaaaactt atttttaacc tcgtctttta aagatgttgt accattattt actgaatttg
      541 aaagcaatct ccaaggaaaa accgttactt ttatcccgac ggctagcacc gttgaagaag
      601 ttgtttttta tgtagaagct ggtaaaaaag cgctcgagga tttagggtta attgtagagg
      661 aactagatgt ggcggcagaa aatctagaag aaataacgat gacactcaaa aaaaatgatt
      721 ttatttatgt tactggagga aatactttct ttttactaca agaattaaaa cgaactggtg
      781 cagataaatt aattttaaag gaaattgcta aaggaaaatt atatattggt gaatcagccg
      841 gtgcagtcat cacgagtcct aatatatcgt atatccaatc aatggacagc gtaaaaaaag
      901 ccactaattt aaccaactat gatgctttaa atttagtcga tttctatacg cttcctcatt
      961 acaacaacac accttttaaa aaaataacac aacaaataat agcggactat gcggatgatt
     1021 taaaaatatt tccgattagt aactgcgaaa ctatttttgt acaaggtaac gtggtaactt
     1081 cgaaaggaat tctttaacag cattctccaa aaacgccttg aaacttggat atccgtttaa
     1141 gtttcaaggc gtttttgttg tataataaaa ctaaaactac atcataggag gtacaacatg
     1201 tacaaaattt ttagtttcgt ttcattaata cttagtatgc tatgttttat gggcttacaa
     1261 gttttaaatg tcattcaa
//
LOCUS       DASDXX010000330         1276 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.332, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000330 DASDXX010000000
VERSION     DASDXX010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.332"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            418..1251
                     /locus_tag="U0280_002924"
     CDS             418..1251
                     /locus_tag="U0280_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="resuscitation-promoting factor"
                     /protein_id="HEM2272825.1"
                     /translation="MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNV
                     SIKQLKEDNNLSSDIIFPNQTLQVNSSEKKSTTNNNSEYTVVAGDTLGHIAVDKGVTV
                     NQLKSWNNLSSDLILVGQKLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAA
                     PTTQKSTSSNEASSNSSSAQGNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVI
                     AVDPSVIPLGSKVYVEGYGQAIAADTGGAIKGNKIDVHLNSVQEANNWGVKQVKVQIL
                     D"
BASE COUNT          497 a          198 c          222 g          359 t
ORIGIN      
        1 aatatacctc aagaagagga tgaatgatgt aatactttgt tataaagagc catatttcat
       61 aatgaatttt aaaaatccca ccccaaaaaa caacaaaatc aataaattat cagctcaatt
      121 tgtaatggaa aaattttcca attttagtta cttcgcacat ttaattcatt aagtgaacaa
      181 tcaggaaacc ttttattaat tgactaaatc cccacggcga gttaggctag attgattttc
      241 acagaaaata caaccagtag caatagaaat cagacaataa aggcaattta caaatattgc
      301 aggaaaacgg atactatttg aaagtgtgtc atacatgctt aatttttcag taaccaagct
      361 gatagtttcg tatggtacga ttatcctcga aagttatcaa ggagggaaaa taattacatg
      421 aagaagacag tagtagccat tgcggctggt ttaattattg caggatctgg ttcaactcaa
      481 gcttttgcag ctgagtataa agtgcaagat ggtgattcac tatggaaaat atcaaatgaa
      541 aataatgtct ctataaaaca attgaaagaa gataacaatt tgagttctga cattattttt
      601 ccgaaccaaa cattgcaagt aaatagtagt gagaaaaaat ccactactaa taacaattct
      661 gaatacacag ttgttgcagg agatacactt ggacatatcg ctgttgataa aggtgtaaca
      721 gttaatcaac ttaaatcgtg gaataatctt tcttcagatt taatattagt aggtcaaaaa
      781 ttatctattg gtaataaagc ttcagcaagt gaaagtaatg cttcagaaaa caattcaaca
      841 gcaaataatt cagccaataa taaagtaaca gaacaaccga aagaagaaaa ggcggctcca
      901 acaactcaaa aatcaacttc ttctaatgaa gcatcttcaa acagttcttc agcacaaggt
      961 aatgtttcaa aagagttaac ggtaactgcg acagcatata gtaaagctga acctggcatg
     1021 ggccacatga cagcgacagg gattgattta aatgataatt caagagtaat tgcagttgat
     1081 ccatctgtta ttcctttagg ttcaaaagtt tatgttgaag gatacggaca agcaattgca
     1141 gctgatactg gtggtgcaat taaaggtaat aaaattgatg tacatttaaa ctcagtacaa
     1201 gaagctaaca actggggcgt aaaacaagtt aaagtacaaa ttttagatta attcattcca
     1261 tatagaaaga ctgtga
//
LOCUS       DASDXX010000331         1271 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.333, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000331 DASDXX010000000
VERSION     DASDXX010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.333"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1226
                     /locus_tag="U0280_002925"
     CDS             <1..1226
                     /locus_tag="U0280_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2272826.1"
                     /translation="LNLPEPQVDQLYIGDDYITGKLQQEVPMHYPGNAAYVLFNNKQY
                     NITDYTVENDVNFRLKLPKTLEAGDTLNYFTITGNVLDPVAYPGQESYKLAGPFTPIE
                     KANIQVNYVDETNQTLATSDTLSGKLGETYTTSPKAIDGYQVKETPTNATGTYTTNTE
                     TIQVNYVYEKTAVEGANVSVEYIDEATNESIAPTETLSGKIGATFQAEVKELDGYELS
                     QVPSNQSGTYTDQPQSVIFKYKKITTPVEVAKDVTVTYKDTKGNQLADPVILKGDIGS
                     TFETEAKSFKGYKLTKTPSNHIGSFTSDSQEVDYVYSKDSSIITPPVDPVDPDKPIVI
                     NPVKPVNPATPTVPNKNIPKKKITKTVNQTDKTTTASELPKTGDSENNLPLIIGVSLL
                     ISGVYIFTTRRKRVK"
BASE COUNT          511 a          262 c          196 g          302 t
ORIGIN      
        1 tgcttaattt acctgaacca caagtggatc aactctatat tggagatgac tatattaccg
       61 gaaaattaca acaagaagta cctatgcatt atcccggcaa tgcagcctat gtgcttttta
      121 acaataaaca atataatatc accgactata cggttgaaaa tgacgtgaat ttccgtctaa
      181 aattacctaa aacgctggaa gctggagaca cactaaacta ttttaccata actggtaacg
      241 tacttgatcc agttgcttat cctggacaag aatcatacaa attagccgga cctttcactc
      301 caattgaaaa ggcaaatata caagttaatt atgttgacga aacaaaccaa acacttgcaa
      361 cgtccgacac attatccgga aaactcggtg aaacttatac aacatctcca aaagcaattg
      421 atggctacca agtaaaagaa acaccaacaa acgcaacagg cacctacaca acaaacactg
      481 aaacaataca agtgaattac gtatatgaaa aaacagcagt agaaggggca aacgtatctg
      541 tagaatatat agatgaagca actaatgaat ctatcgcccc aaccgaaaca ctttctggaa
      601 aaataggcgc gactttccaa gcagaagtaa aagaactcga cggctacgaa ttaagccaag
      661 tgccatcaaa tcaatcagga acatacaccg accaaccaca atccgttatt ttcaaatata
      721 aaaaaataac aacgcctgtt gaagtcgcaa aagatgtaac tgtaacgtat aaagacacta
      781 aaggaaatca acttgctgat ccagttattt taaaaggtga catcggatca actttcgaaa
      841 cagaagcaaa atcttttaaa ggctataaat taactaaaac accaagtaac cacattggct
      901 catttacgag tgatagtcaa gaagttgatt atgtatatag taaagatagc tcgattatca
      961 caccgccagt tgacccagtt gacccagata aaccaattgt aattaatcct gtaaaaccag
     1021 tcaatccagc cacaccaact gtaccaaaca aaaacattcc aaaaaagaaa atcactaaaa
     1081 ctgtaaacca aacagataaa acaactacag cttccgagtt accaaaaaca ggtgacagcg
     1141 aaaataattt accattaatt atcggtgtta gtttgttaat cagcggagtt tatatcttca
     1201 ctacaagaag aaaacgagtg aaataagttt tacaaaagcc ttaatcatga ttatgattaa
     1261 ggcttttgta a
//
LOCUS       DASDXX010000332         1222 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.334, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000332 DASDXX010000000
VERSION     DASDXX010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.334"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            121..969
                     /locus_tag="U0280_002926"
     CDS             121..969
                     /locus_tag="U0280_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2272827.1"
                     /translation="MNKNKTGWNIAKIIVGALIFSLAVNVFAIPNNLGEGGVTGLTMM
                     LYYLLGWTPAVTTFIFNGILLIIGYKFLDRMTIVWTIVAISFTSIFLHFSEPLAFVAN
                     QTIVAAIFAGLMMGIGMGLIMNGGGTTAGSAILAKIANKYLGWNTSYALLFFDLLVVI
                     PSVFVIGFENMLFTIVSLYISTKVLDFILEGYNPKKSVTIISDYYEEIATEIDANLER
                     GITLFNGQGFYMRQDKKILYIVISRDQLLPLTKIVNKYDEKAFFIINDVQSVVGEGFT
                     KQITSE"
     gene            1036..>1222
                     /locus_tag="U0280_002927"
     CDS             1036..>1222
                     /locus_tag="U0280_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272828.1"
                     /translation="MKISKPAYLVLLVVGLVFVFLGLSNIGISIFWDFSDLENLMVGS
                     LLIIIGLITLRIRYSFKK"
BASE COUNT          343 a          180 c          243 g          456 t
ORIGIN      
        1 ttttatggtg agacaattaa tgacaaagat gtcagttaat gcttttttta taaaaagact
       61 ccagagtgcc tgtttagtgg tattcttggg tctttttttg catggaaagg agaaatggag
      121 atgaacaaaa ataaaactgg ttggaacatc gcaaaaatta tcgtgggggc gcttattttc
      181 tcgctagctg tcaacgtttt tgctatcccg aataatttag gagaaggcgg cgttactggg
      241 ctaacaatga tgctttatta cttgcttggt tggactcccg cagtcactac ttttatattt
      301 aatggtattt tacttattat tggttacaag tttcttgatc gaatgacgat tgtctggaca
      361 attgttgcta ttagtttcac ttcgatcttt ttacattttt ctgagccgct tgctttcgtg
      421 gcaaatcaaa cgattgtcgc agccattttt gccggattaa tgatgggaat tggtatggga
      481 ctaattatga atggtggcgg aactactgct ggtagcgcta ttttagcgaa aattgctaat
      541 aaatatcttg gttggaatac gagttatgcg ttgctattct ttgatttact tgttgttatt
      601 ccttctgttt ttgtaatcgg ttttgaaaac atgctattta ccatcgtttc gctttatatt
      661 tcaaccaaag tacttgattt cattcttgaa ggttacaatc ctaaaaaatc tgtcacgatt
      721 atatcggatt attatgaaga aattgcaact gaaattgatg cgaatttaga gcgtggtatt
      781 acccttttca acggtcaagg tttctatatg cgtcaagata aaaaaattct ttatatcgta
      841 ataagtcgtg atcaattact gccgctcacc aaaatcgtca acaaatatga tgagaaagca
      901 ttctttatta ttaatgatgt acaaagtgtt gtgggggaag gctttacaaa acaaataaca
      961 agtgagtgat gtcgtttctc tcaacttatg ttacaataat gtggaaatta tttttaatgt
     1021 aaatgaggcg tccttatgaa aatttctaaa ccggcttatt tggttttact tgttgttggc
     1081 ttggtttttg tttttctagg actatctaat atcggaatct ctattttttg ggattttagc
     1141 gacttagaga atttgatggt tggtagttta ttaatcatca tcgggctcat cacacttagg
     1201 attcgatatt catttaaaaa aa
//
LOCUS       DASDXX010000333         1213 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.335, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000333 DASDXX010000000
VERSION     DASDXX010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.335"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..985)
                     /locus_tag="U0280_002928"
     CDS             complement(<1..985)
                     /locus_tag="U0280_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272829.1"
                     /translation="MSIVVEQLVMKDTGERWGSPYLLEQLKINLANTSADFVIVCSKS
                     DQNILSQIQDYLARFADNMVGADIHLFNQNPLFVQHLRKLPNEDSYEMTDTLQFLEET
                     IPNPTSTYLERDPHMLLEEVGQYILYNVAFLKAYFEKAEITHELINIFHKANMVWKHS
                     VLEETKKNEEKMKVPDNYLINDMVDCWSYYRNLENKYTSLSLELLDFDKNLFNYLIRT
                     KLGPIFQKKLMAEDLTEAVDAIDALTVFLETNNKRLVSELISLGYFYIQVPVKEYSHW
                     EKNKQFGTAYLKFLKVLFDKMHYQTKQYYLSYYRRATNAVYKAVGLNSLNPI"
     gene            complement(982..>1213)
                     /locus_tag="U0280_002929"
     CDS             complement(982..>1213)
                     /locus_tag="U0280_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2272830.1"
                     /translation="DDYLDERGFYFDYKATIPGEVFKDTPSLIESIKTGKYNYDELEV
                     FKKKFVGSLDGNSTKRFVETYIVQANEEVKDL"
BASE COUNT          401 a          234 c          161 g          417 t
ORIGIN      
        1 caataggatt taaagaattt aaaccaactg ctttatacac tgcatttgtc gcacggcgat
       61 aataacttaa ataatattgt ttcgtttgat aatgcatttt atcgaaaaga acttttaaga
      121 atttcaaata agccgttcca aattgtttat ttttctccca atgagaatac tctttcactg
      181 gaacttgtat ataaaagtaa cctaacgaaa taagttcact cacaaggcgt ttattattcg
      241 tttcaagaaa aacagtaagc gcatcaattg catcaactgc ctctgttaaa tcttccgcca
      301 ttaatttctt ttgaaaaatt ggacctagtt tggttcgaat caaatagtta aataaatttt
      361 tgtcaaaatc aagtaactct aaacttaaag aagtatactt gttttccaaa tttcgataat
      421 acgaccaaca atcaaccata tcattgatca agtaattatc tggaactttc attttctctt
      481 cgtttttctt cgtttcttcc aaaacactat gtttccaaac catattggct ttatgaaaaa
      541 tattaattaa ttcatgcgta atctctgcct tttcaaagta cgctttcaaa aaagcaacat
      601 tatacaaaat atattgcccc acttcttcaa gcaacatatg tggatcacgt tccaaataag
      661 tgctagttgg attcggaatc gtttcctcta aaaattggag tgtatccgtc atttcataac
      721 tatcttcatt tggcaatttt cgtaaatgtt gtacaaaaag agggttttga ttaaataaat
      781 ggatatcagc accgaccata ttatcagcga aacgagcgag atagtcttgt atttgcgaaa
      841 gaatattttg atcgcttttc gaacaaacaa taacaaaatc tgctgatgta ttagcaagat
      901 ttatctttag ttgctctaac agataaggac ttccccatct ctcaccagta tctttcataa
      961 cgagttgttc cactacaata ctcataaatc tttcacttcc tcatttgctt gaacaatata
     1021 ggtctctaca aaacgcttcg ttgaattacc atctaagctt ccaacaaatt tctttttaaa
     1081 gacttccagt tcgtcgtaat tatattttcc cgttttaatc gactcaatga gcgacggcgt
     1141 atctttgaaa acttcaccag gaatagttgc tttgtaatcg aaataaaatc cgcgttcatc
     1201 caaataatca tca
//
LOCUS       DASDXX010000334         1213 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.336, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000334 DASDXX010000000
VERSION     DASDXX010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.336"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(40..744)
                     /locus_tag="U0280_002930"
     CDS             complement(40..744)
                     /locus_tag="U0280_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2272831.1"
                     /translation="MINLIFDIDDTVYDQLKPFENAFKTVFGKADHLKIENLYIKSRF
                     YSDEVYHRVVQGEMPKAAMHVYRITQALNDFDYQITKKEAEAFQHAYEQNQRKIELTS
                     GIKEILTWAKKNEITMGIITNGPKEHQQHKINDLQINDWIPTEHTFISGKVGIEKPDK
                     KIFKLVEEQIGIKGAETYYIGDSFENDVIGSKSAGWKSIWLNRRGHLIPTEAAFQPDY
                     CVENEQQLFAILQEIF"
     gene            complement(830..>1213)
                     /locus_tag="U0280_002931"
     CDS             complement(830..>1213)
                     /locus_tag="U0280_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEM2272832.1"
                     /translation="GPNTELTEGKEGFEIYEKFQPTTLERIFDKSVNSAFKGTGLLAY
                     LKEKGTKKIVVAGLQTDFCIDATVKCGFEHGFQMIVPTHANSTEENHFMSGENSYKYY
                     NEWMWPDRYATCISIEETINEMENN"
BASE COUNT          326 a          240 c          197 g          450 t
ORIGIN      
        1 tcataactaa aaaacctttt ccaaaaatgg aaaaaggtct taaaatatct cctgtaaaat
       61 tgcgaataat tgttgctcat tttcaacaca ataatctggc tgaaatgctg cctctgttgg
      121 tatcaaatgt cctcgtctat tcaaccaaat tgatttccaa ccagcacttt ttgaaccgat
      181 aacatcattt tcgaaagaat cgccaatata ataggtttcg gcacccttaa taccgatttg
      241 ttcttctact agcttaaata ttttcttgtc tggtttttcg ataccgactt taccagaaat
      301 gaacgtgtgc tcggttggaa tccaatcatt gatttgtaaa tcatttattt tatgttgttg
      361 atgttctttt ggtccgtttg taatgattcc catcgtgatt tcgttctttt tcgcccatgt
      421 gagaatttct ttaatccctg acgtaagttc gattttgcgt tggttttgtt cgtaggcgtg
      481 ttgaaaggct tctgcttctt ttttagtaat ttgataatca aaatcattta gcgcctgcgt
      541 aatccggtaa acgtgcattg ctgctttcgg catttcgcct tggacaacgc ggtgatacac
      601 ttcatcacta taaaatcgac ttttaatata taaattttcg attttcaggt ggtccgcttt
      661 tccaaaaaca gttttaaatg cgttttcaaa tggttttaat tggtcataaa ctgtgtcatc
      721 aatatcaaaa attaaattaa tcatcatttc ctcctgcaaa attcactcct tttactctac
      781 cattaaatca aaaaagtagg aagagcctaa gcgtaatgct tagactctct tagttatttt
      841 ccatttcatt aattgtttct tctatagata tgcaggtcgc gtaacgatca ggccacatcc
      901 attcattata atacttgtaa ctattctccc ccgacataaa gtggttttct tccgtcgaat
      961 tggcgtgggt gggaacaatc atctggaagc catgttcaaa accacatttc actgtggcgt
     1021 caatgcaaaa atcggtttgc aatcctgcta ctacaatttt cttcgttcct ttttctttga
     1081 gataagcaag taagcctgtt cctttaaaag cgctattaac gcttttatca aaaattcttt
     1141 cgagtgtggt tggttggaat ttttcgtaaa tttcgaagcc ttcttttcct tctgtaagtt
     1201 ctgtattagg tcc
//
LOCUS       DASDXX010000335         1209 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.337, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000335 DASDXX010000000
VERSION     DASDXX010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.337"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            58..708
                     /locus_tag="U0280_002932"
     CDS             58..708
                     /locus_tag="U0280_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272833.1"
                     /translation="MNNRNWLKGLGVTMIAATLILTGCGNGDAEKTDTKEQTKSVEEE
                     GKKVKIESNEGKPQHEQLITVKLPPEADYLNDETLEVYEQDKKKYDQTEQLITNDSIT
                     LLIGDYGYYDPVQDAIECSAVIVNGTKTEIKDLSFQVSIENNVMQGRVFLDNSVPELT
                     KEQTGNFKPSMGIPVILGFPEEKPTDEIENGRKIDTKNIKINLSDIQYKVVEQEGK"
     gene            708..1022
                     /locus_tag="U0280_002933"
     CDS             708..1022
                     /locus_tag="U0280_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HEM2272834.1"
                     /translation="MGEEIKIDPHFLKKVENNVNSYIKAQKEVSIALLAVRNNLASNF
                     SGVACNEIKNYITELMNDLEKEFGVFITKNHEKVKALEESYKELDSQLGQTFNYGMER
                     TK"
BASE COUNT          514 a          132 c          255 g          308 t
ORIGIN      
        1 acgaattaac agtatcaaaa ttaatagaat aagacataaa aaataagagg ttacaacatg
       61 aataatagaa attggttaaa aggattagga gtaacaatga ttgccgccac tttaatttta
      121 acgggatgcg gaaatggaga cgctgaaaag acagatacaa aggaacagac taaaagtgtt
      181 gaagaagaag gaaaaaaagt aaagattgag agtaatgaag ggaaaccaca gcatgaacag
      241 cttataacag tgaagttgcc gccagaagca gattatttaa atgatgaaac gttagaagtg
      301 tatgagcaag ataaaaagaa gtatgaccag acagagcaac taattactaa tgattcaatc
      361 acattactaa tcggagacta tggatattat gatcctgtgc aggatgctat agaatgttct
      421 gctgtaatcg taaatggtac aaaaacagaa attaaagatc ttagttttca agttagtatt
      481 gagaacaatg taatgcaagg tagggtattt ttggacaatt cagtaccgga acttacaaaa
      541 gaacaaacag gaaattttaa gcctagtatg ggtataccgg taattttagg gtttccagaa
      601 gaaaaaccga cagatgaaat cgaaaatggt agaaaaatcg acactaaaaa cataaaaatt
      661 aatttaagtg atattcaata taaggttgta gaacaggagg ggaaatgatg ggagaggaaa
      721 ttaaaataga tcctcatttt ttgaaaaagg tggagaataa tgtaaatagt tacattaagg
      781 ctcaaaaaga agtttctatt gcattactag cagttagaaa caacttagcg agtaattttt
      841 caggtgttgc ttgcaatgaa ataaaaaatt atataacaga attaatgaat gatttagaaa
      901 aagaatttgg tgtcttcatt acaaagaatc atgaaaaagt taaggcgtta gaggaaagtt
      961 ataaagaact tgatagtcag ttaggacaga cctttaatta tggaatggag agaacaaaat
     1021 gagtagaaaa atacatctaa aaacttttta aaagaaagcg gaataaaaac atggctgatt
     1081 taaagggagt atagcaaatc ctcaataagg agcaattgta aaggtttttg atgcagttgg
     1141 aggaaaacaa atccagtttg acacctcagt gagatgatat gagaaattac acttgttaag
     1201 tgggataaa
//
LOCUS       DASDXX010000336         1185 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.338, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000336 DASDXX010000000
VERSION     DASDXX010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.338"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            238..>1185
                     /locus_tag="U0280_002934"
     CDS             238..>1185
                     /locus_tag="U0280_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2272835.1"
                     /translation="MKRKISSIIVVGIMFFQSLTTYPFITEAKENEQKEEINKPSKIT
                     KGLTNSLKYTKTILETGDTYDSVFPDSALAKVVAKEATGSENTTQLVTQADLNKIKSL
                     NGYNKGISVLTGIDLLVNVTSISLNNNQVTDISPIDQLPNLVSLSVKNNQISSLILNA
                     QNQLPKLTTIDIENNPDLNTIDIQDQPQLVDVKTSGYTGLRKLTTVIAKNNPELVNLG
                     QYTIRNVYFSQVASLTKVELVNLPKVRKVNLERNSINELKVTDLAIEDLPLGENELTD
                     TVFDNIQNLPNLKTLDLSKNQLEEVVLDKTDVENLPNLMT"
BASE COUNT          490 a          199 c          180 g          316 t
ORIGIN      
        1 atttcaagca ataaatttaa atatattaga gagtctaaaa ttagcactaa tccctaaaaa
       61 gatatgaacg atatgtgaac gatgatacca agaaatgaaa aaatctctat actatattca
      121 aattgtaagc ttaggactgc tataattagt acttattgag gcgatataat gccacataca
      181 ttaaatacag aataaactca ttctttaaga taataattac atctaaggag actaatcatg
      241 aaaagaaaga taagttctat cattgtagtc gggataatgt tctttcaatc attaactacg
      301 tatccattta tcaccgaagc caaagaaaat gaacaaaaag aagaaataaa taaaccctca
      361 aaaataacta agggattaac taattcccta aaatacacta agacaattct tgaaacaggg
      421 gacacctatg atagtgtatt tcctgacagt gctttagcta aagtagttgc taaagaagca
      481 acggggtcag agaatacaac tcagctagta acacaagctg acctgaataa aatcaaatct
      541 ctcaatggtt ataataaagg aattagcgta ttaacaggaa tcgatttgct agtcaatgtg
      601 acaagtataa gcttgaataa taatcaagta acagacattt ctccaataga tcaattacct
      661 aatttagtaa gcctatcggt aaaaaacaat caaattagca gtcttatctt aaatgcgcaa
      721 aatcaactcc cgaaactaac aaccattgat attgaaaata atcctgatct taatactatc
      781 gatatccaag atcaacccca attggtagat gtaaagacat ccggttatac aggattacgc
      841 aagttaacaa cggtaattgc caaaaacaat ccagaattag tcaatttagg ccaatacact
      901 atccgaaatg tctactttag ccaagtagca agtttaacga aagttgaact agtcaatctc
      961 cctaaggtaa gaaaagtaaa ccttgagagg aacagtatta atgagctaaa agttactgat
     1021 ttggccattg aagatctgcc attaggagaa aacgaattaa cagatacagt atttgataac
     1081 atccaaaatc tgcctaattt aaaaacgtta gatctgtcaa aaaaccaact agaagaagtt
     1141 gtattagaca aaacggatgt agaaaatcta cccaatttga tgaca
//
LOCUS       DASDXX010000337         1178 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.339, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000337 DASDXX010000000
VERSION     DASDXX010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.339"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            25..1098
                     /locus_tag="U0280_002935"
     CDS             25..1098
                     /locus_tag="U0280_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003532932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2272836.1"
                     /translation="MAAFKDKNGTWFTSFRYINWQGEKKQKVKRGFSTRKEALEWERQ
                     FLQQKTADLTMTFLSFWEIYKKDMKNRIRESTWETKISIVERKILPYFKNRKMSEIAP
                     KDIIQWQNEMISYRDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPARKAGNMG
                     KEKSVEMLFWTKEEYQKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDFDFNKG
                     TLSISKSCQRLKGMDVITEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPI
                     TKSYLHSEMTRGAKEQKIKRIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTYR
                     YAHLFPTKQMEIANMLDNLKGEY"
BASE COUNT          458 a          163 c          238 g          319 t
ORIGIN      
        1 acaaaaagaa ggaggaaatt aacattggca gcattcaaag ataaaaacgg tacctggttt
       61 acgtcatttc ggtatattaa ttggcaaggt gaaaaaaagc aaaaagtgaa acgaggattc
      121 tctacaagaa aagaagcact tgaatgggaa cgacaatttt tacaacaaaa aacagcagac
      181 ttaacaatga ctttcctgtc cttttgggaa atttataaga aggatatgaa aaatagaatt
      241 agagagagta cttgggaaac taaaataagt attgtagaaa gaaagatatt accgtatttc
      301 aagaatagaa aaatgagtga gattgcacca aaagatatta tccaatggca gaatgaaatg
      361 atttcttatc gagataaaaa cgggaaagct tattctcctg tgtatctaaa aacgcttcac
      421 aatcaattga gtgcgatgtt taatcatgca gtacgatttt atgaattaaa gtctaaccca
      481 gcgagaaaag caggtaatat gggaaaagag aaaagcgtgg agatgttatt ttggacgaaa
      541 gaagaatacc aaaaattttc ggactccatg atggataaag caatatcatt ttatgctttt
      601 gaaattttat attggtgtgg aattcgacta ggtgagttac ttgctcttac tgcttcagat
      661 tttgatttta ataaaggtac actatccatt tcgaaatctt gtcagcgtct taagggtatg
      721 gatgtgataa ccgaaccaaa aactcctaaa agtaatcgta tcatacaaat gccagaattt
      781 ttgggagaag aaattcaaga gtatattcaa tctatttata aatgggagcc agatgagcgt
      841 ttgtttccaa taacaaagag ttacttgcac agtgaaatga caagaggagc taaggagcaa
      901 aaaataaaac gcatacgcat ccatgattta agacattcgc atgtatcact tctaatagat
      961 agcggatttt cagcagtggc aattgcagat cgcttgggac acgaaagtat agatgttacg
     1021 tatcgttatg cacacctatt tccaaccaaa caaatggaaa ttgcaaatat gttagacaac
     1081 ttaaaaggag agtattaata tgtcagttaa aacattagat ggaaaaggac gttggagaaa
     1141 taaaatagtt gcatttaggg tatcaccaga agaaaatg
//
LOCUS       DASDXX010000338         1172 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.340, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000338 DASDXX010000000
VERSION     DASDXX010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.340"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..472
                     /locus_tag="U0280_002936"
     CDS             <1..472
                     /locus_tag="U0280_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM2272837.1"
                     /translation="IDKSNGDAFNAILPLISNSNAREITHVRSVYQEVSSEITTLKWQ
                     IYQQLIGTIILALCLCSFMVLLVLSYYGENLYKQLIYHVFGYSFWKSSKWFSISNLFV
                     SVFSGILIFILSKEPVALYFSVVILIIELCAIYFIKEKAIYKDFKAILKGEKYD"
     gene            465..1088
                     /locus_tag="U0280_002937"
     CDS             465..1088
                     /locus_tag="U0280_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272838.1"
                     /translation="MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLL
                     NVIGHLDSKDSGQVIINEMEYQPKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITG
                     GKNRKLMIEHLEEVGMDESYLAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNL
                     DDKNKHKIIELFLALKKQGKTIICVTHDPEISAKADRIIYIEGGEIR"
BASE COUNT          414 a          158 c          225 g          375 t
ORIGIN      
        1 tattgataaa tcgaatggtg acgcttttaa cgctatctta ccacttatta gtaattcaaa
       61 tgcaagagaa attacccatg taaggagtgt ttatcaagaa gtttcaagcg aaataactac
      121 tttgaaatgg caaatatatc agcaattgat aggtacgatt atcttagccc tatgcttatg
      181 ctcttttatg gtacttcttg tactgtccta ttacggggag aacttatata agcaactaat
      241 ttatcatgta tttggctatt cgttttggaa aagtagtaaa tggtttagta taagcaattt
      301 gtttgtgagt gttttttctg gaatcctcat ttttattctt agcaaagaac cggttgccct
      361 atattttagc gttgttattc tcataataga actatgtgcc atttatttca taaaggaaaa
      421 agcgatttat aaagatttta aagccatact aaaaggtgaa aaatatgatt gaattagtta
      481 atgtcagtaa aaagatacaa gataaattga ttttggaaaa agtctctctt tctattggag
      541 ctggtgaatt tattgcagtc gtcggcgaga gtggtagtgg gaagaccacg ctgctgaatg
      601 ttatcggaca cctagattca aaagatagtg ggcaagttat tattaacgag atggaatatc
      661 agccgaaaaa agaggttatg actctaaaaa aagaggtgtt aggttttata ttccaaaatt
      721 atctattgat ggaaaatgaa acagtgttag aaaacttatc cattacaggt ggaaaaaatc
      781 gcaagctgat gatagagcat ttagaagaag taggaatgga tgaaagctat ttagcaaaaa
      841 aagtatacca attaagcggt ggagaaaaac aacggattgc tattgtgcgc attttactca
      901 aaccatttca gttattactt gcggacgaac caacaggcaa cttggatgat aaaaacaaac
      961 acaaaatcat tgaattattt ttagcgttga aaaaacaagg taaaacaatc atttgtgtca
     1021 cacatgaccc agaaatatct gcaaaagcag atcgaatcat ttacattgaa ggaggcgaaa
     1081 taagatgaaa attatcggta tttctttagt aaatagtctt ttaatactct tagtggtgct
     1141 tattcataaa attttcttta gggtattatt gc
//
LOCUS       DASDXX010000339         1142 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.341, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000339 DASDXX010000000
VERSION     DASDXX010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.341"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(145..306)
                     /locus_tag="U0280_002938"
     CDS             complement(145..306)
                     /locus_tag="U0280_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272839.1"
                     /translation="MKDFEMMEAIKQKRLECKLVILENFESSFKEALNKGDSAMVSAL
                     AESLETVIK"
     gene            complement(338..619)
                     /locus_tag="U0280_002939"
     CDS             complement(338..619)
                     /locus_tag="U0280_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272840.1"
                     /translation="MNNIKQAIIKLETILENGNEKENRLFVKYNTIKNILDLLEKDQE
                     LKIIEMEVELNGVEDSIENAALLEKRLSEAKSLVEDLANTINSLEIKVK"
     gene            complement(645..929)
                     /locus_tag="U0280_002940"
     CDS             complement(645..929)
                     /locus_tag="U0280_002940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272841.1"
                     /translation="MNIRYLSKKRSEEKDLIFKTKNILPENLKSLNIEMQGDRNCCYG
                     LLEINGKQLGKGITAVKLDLKAGSLPIVQVKYHPFTISEEMRRLLWSGKY"
     gene            complement(933..1142)
                     /locus_tag="U0280_002941"
     CDS             complement(933..1142)
                     /locus_tag="U0280_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007505796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272842.1"
                     /translation="MAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYG
                     KSVGEIFFNKEITNSDNKKLTKIGG"
BASE COUNT          321 a          217 c          126 g          478 t
ORIGIN      
        1 ataacaaaag ttttgattta aatgattttt atttagaagc cgataaaact tacaaaatca
       61 tttataaggg tgcaaacgag ttagaaaacg atttatcgaa agtttttcta atgaactcaa
      121 atgatgtcct ttacattgag ttcactattt aataactgtt tccaatgatt ccgctaaagc
      181 cgacaccatg gcggaatctc ccttattgag ggcttcttta aaactcgatt caaaattttc
      241 caaaattact aatttacatt caagccgttt ttgtttaatt gcttccatca tttcaaagtc
      301 cttcattttt taacctccta ttctttttgg aaaagcttca cttcacctta atttctaacg
      361 agtttatagt gttagccaag tcttccacca aagatttagc ttcacttaat ctcttttcta
      421 acaaagcggc gttttctatg gaatcctcta ctccattcag ctctacttcc atttcgataa
      481 tttttagctc ttgatctttt tcaagtaaat ctaaaatgtt ttttatagtg ttgtacttaa
      541 cgaataatct attctctttt tcattaccat tttctaaaat tgtttctaat ttaataattg
      601 cttgtttgat gttattcatt tttcttcctc ctaaattatg gtttttagta ttttccagac
      661 cataacagtc ttcgcatttc ttcgctgatt gtgaatggat gatatttgac ttgcacaatt
      721 ggcaacgatc ctgcttttaa atctaacttc actgctgtaa ttccttttcc taattgcttt
      781 ccattaattt ctaatagtcc ataacaacaa tttctatctc cttgcatctc aatatttaac
      841 gatttcaagt tttctggtag tatgtttttg gttttaaaaa tcaaatcttt ttcttcactt
      901 cttttcttac tcaaatatct tatgttcatt ttctaccctc ctatttttgt tagtttttta
      961 ttatcactat tagtgatttc tttattaaaa aaaatttctc caacgctttt tccgtaaaaa
     1021 tttgctactt taatctttgt tttatctgaa ctacctcgat aacctgcttc cattttagaa
     1081 agtaaactat aagaaatacc gatagcctca gctgcttcta attgtgtaat acctttagca
     1141 at
//
LOCUS       DASDXX010000340         1125 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.342, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000340 DASDXX010000000
VERSION     DASDXX010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.342"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..818
                     /locus_tag="U0280_002942"
     CDS             <1..818
                     /locus_tag="U0280_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2272843.1"
                     /translation="GVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDY
                     HEQIFEDFVKTSTIPAILEKYGYSFEGIFEDISKWKILEQEAPELCADRIDYTLQDLY
                     RHRKISLAEVEGFLQALVMVNGRLYLANISSAEWFVKQYYSEVIDYFYDPLNVYSYEI
                     LAEAMRIAFQQETITTDDLRLTDAELLAKLNANSDAREKIQLLASVHLEENEVDFTYH
                     HKKKMRLINPSVLVDGRLIPADELSEKVREMNDWASERSKHGIYIKATKKSKQ"
     gene            complement(901..>1125)
                     /locus_tag="U0280_002943"
     CDS             complement(901..>1125)
                     /locus_tag="U0280_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272844.1"
                     /translation="TSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATGI
                     VNVKKKEYLWSTMLFEGVLVVLLSLIIVLV"
BASE COUNT          334 a          171 c          260 g          360 t
ORIGIN      
        1 ttggcgtgat gctttttatt aggaagttcg gtggctcttt ggaggagcaa attgctggct
       61 tactgcacga cgtatcgcac actgcttttt cacatgtggt ggattatgcg cttgattttg
      121 aagaggaaga ttatcatgag cagatttttg aggattttgt aaaaacttcg acgattcctg
      181 ccattttaga gaagtatggt tattcttttg aagggatttt tgaggatatt tcgaagtgga
      241 aaattttgga gcaagaagcc ccggagcttt gtgctgaccg gattgattat acgttgcaag
      301 atttgtatcg acataggaaa attagtttgg ctgaggtgga gggatttttg caggctttag
      361 taatggtgaa tgggcggctt tacttggcga atatctcgtc cgctgaatgg tttgttaagc
      421 aatattattc agaggtgatt gattattttt atgatccgct gaatgtttat agttatgaga
      481 ttttggctga agcaatgcgc attgcgtttc agcaggagac gattacgacc gatgatcttc
      541 ggttgactga tgctgaatta ttggctaaat tgaatgcgaa ttcagatgct cgggagaaaa
      601 tccagttgct cgcgagtgtg catttagaag aaaatgaggt ggactttact tatcatcata
      661 agaagaaaat gcgtttgatt aatccgtctg ttttggtgga tgggcggctt attccggcgg
      721 atgagctttc agaaaaagta cgtgaaatga atgattgggc atctgagaga agtaagcacg
      781 gcatctacat aaaagcaacc aaaaaaagta agcagtagtg acactgctta cttgagaggt
      841 ttgagttaac aatactccta tttagtttgg aacatccatc tattcatata tttacatccg
      901 ttagactaat acaataatta aacttaatag aactactaac acgccttcaa ataacatagt
      961 gctccaaaga tattcttttt tcttcacatt tactatacct gtcgctaaga agcagattaa
     1021 aagaatgatg tgaagccaaa ttggaaaagc aatgccagta ttattactaa ccatagaaat
     1081 actcatgtaa atgcatacta ttgtccaaac gattaatgta cttgt
//
LOCUS       DASDXX010000341         1118 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.343, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000341 DASDXX010000000
VERSION     DASDXX010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.343"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..491
                     /locus_tag="U0280_002944"
     CDS             <1..491
                     /locus_tag="U0280_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2272845.1"
                     /translation="EMGRVTSTILKELDKLNEEVVLIATTNLYEKFDRALIRRFDSVI
                     NFNRYEKEDLVEISEIILNSLLKKFKDAGRDMKLFKKVIRNMDEIPNPGELKNLIRVS
                     LAFSDPTNEFDYLRRLLRYVVEKPGNIELKELQNMGFTVREIEILTGISKSQVSRELK
                     GD"
     gene            496..>1118
                     /locus_tag="U0280_002945"
     CDS             496..>1118
                     /locus_tag="U0280_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM2272846.1"
                     /translation="MNDILHLKGKFEQKERTNRPSGPKLPKNAIVSIKEVEELCDDLL
                     KMESFWSTQTIFSGGLVSVYYKKVAAKSNRISGFLSYKSNSSNDTIVGAKFTDGKKKK
                     HIITHYVSIEAIKESILKGKKAIEVLKSEFNGTISDEELNPKGKLDFIDFDYYGIAKT
                     NFQKIIVDSFYVEKFDTENSDFDSKKNSIVTIYDTGNDTQELFSRLG"
BASE COUNT          445 a          111 c          223 g          339 t
ORIGIN      
        1 gagaaatggg acgggtaaca tctacaatct tgaaagagtt ggataagtta aatgaagaag
       61 ttgttcttat tgccactact aatttgtatg aaaaatttga tagagcctta ataagaagat
      121 ttgattcagt aattaatttt aatagatatg aaaaggaaga tttagtagaa atttcagaaa
      181 tcatattgaa ttcattattg aaaaaattta aagatgctgg acgagatatg aagttattta
      241 aaaaagtaat cagaaacatg gatgaaattc cgaatcctgg agaattaaaa aatttgatta
      301 gggtatcatt agcttttagt gatccaacaa atgaatttga ttatctcagg agattgctga
      361 ggtatgtagt tgaaaaacct ggtaatatag aattgaaaga gttacaaaac atggggttta
      421 ctgttagaga gatagagata ttaactggta tatcaaaaag ccaagtctca agagagttga
      481 agggagattg aaaacatgaa tgatatttta catttgaaag gtaaattcga acaaaaagaa
      541 cgaacaaata gacctagtgg tcctaaatta cctaaaaatg caattgtttc tattaaggaa
      601 gtagaagaac tttgtgatga tttgttgaaa atggaaagtt tttggagtac gcaaactatt
      661 tttagtggcg ggttggtcag cgtatattat aaaaaggtag cagcaaagag taacagaatt
      721 agcggttttc tatcttataa aagtaattca tcaaatgata caattgtggg agcaaaattt
      781 acagatggaa aaaagaaaaa acatattatt actcactatg tttcaattga agcaattaaa
      841 gagtctattc tgaaggggaa aaaagcaatt gaagttctga agtcagagtt caatggcaca
      901 ataagtgatg aagaattgaa tccaaaaggc aagctagatt ttattgattt tgattattat
      961 ggaattgcaa aaacaaattt ccagaaaatc attgtggact cattttatgt agaaaaattt
     1021 gatactgaaa atagtgattt tgattctaaa aaaaattcta ttgtgacgat atatgatacg
     1081 ggtaacgata cacaagaact ttttagtaga ctgggcat
//
LOCUS       DASDXX010000342         1114 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.344, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000342 DASDXX010000000
VERSION     DASDXX010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.344"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1114
                     /locus_tag="U0280_002946"
     rRNA            <1..>1114
                     /locus_tag="U0280_002946"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          318 a          224 c          343 g          229 t
ORIGIN      
        1 cggcggaaca cgtgaaattc cgtcggaatc cgggaggacc atctcccaag gctaaatact
       61 ccctagtgac cgatagtgaa ccagtaccgt gagggaaagg tgaaaagcac cccggaaggg
      121 gagtgaaaca gttcctgaaa ccgtgtgcct acaagtagtt agagcccgtt aatgggtgat
      181 agcgtgcctt ttgtagaatg aaccggcgag ttacgatttg ttgcaaggtt aagcggaaaa
      241 agcggagccg tagcgaaagc gagtctgaat agggcgcata agtaacaggt cgtagacccg
      301 aaaccaggtg atctacccat gtccaggatg aaggtaaggt aatacttact ggaggtccga
      361 acccacgcac gttgaaaagt gcggggatga ggtgtgggta gcggagaaat tccaatcgaa
      421 cttggagata gctggttctc tccgaaatag ctttagggct agcctcgagg taaagagtca
      481 tggaggtaga gcactgtttg gactaggggc ccttctcggg ttaccgaatt cagataaact
      541 ccgaatgcca tgtacttata ctcgggagtc agactgcgag tgataagatc cgtagtcgaa
      601 agggaaacag cccagaccac cagttaaggt ccccaaatat atgttaagtg gaaaaggatg
      661 tggggttgct tagacaacca ggatgttggc ttagaagcag ccaccattga aagagtgcgt
      721 aatagctcac tggtcgagtg accccgcgcc gaaaatgtac cggggctaaa catattaccg
      781 aaactgtgga tgaacctctt tagaggttcg tggtaggaga gcgttctaag ggcggtgaag
      841 tcagaccgga aggactggtg gagcgcttag aagtgagaat gccggtatga gtagcgaaag
      901 aagggtgaga atcccttcca ccgaatatct aaggtttcct gaggaaggct cgtccgctca
      961 gggttagtcg ggacctaagc cgaggccgat aggcgtaggc gatggacaac aggtagagat
     1021 tcctgtacca gtgctaattg tttaaccgat ggggtgacac agaaggatag ggaatcgcac
     1081 gaatggaaat gtgcgtccaa gcagtgagtg tgag
//
LOCUS       DASDXX010000343         1100 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.345, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000343 DASDXX010000000
VERSION     DASDXX010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.345"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            22..606
                     /locus_tag="U0280_002947"
     CDS             22..606
                     /locus_tag="U0280_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2272847.1"
                     /translation="MLTNINYSFEPGKIYGVFGKNGSGKTMLLRSLAGLIIPTSGKIF
                     IDNKELHHDISFPPSMGIIIENMELLPQFDARTNLKILSKIKNIASDEDIDNAIDRVG
                     LSPHIDKKVKKYSLGMKQRLNIAQAVFEKPAVILLDEPTNAIDDQGIELINQLLLEEK
                     KRGATIIIASHHKEDIEPLCDMSIRMDQGKIIHD"
     gene            599..>1100
                     /locus_tag="U0280_002948"
     CDS             599..>1100
                     /locus_tag="U0280_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272848.1"
                     /translation="MTKTKFVIFIALTVITLLLFLVPKGIQYLKSQNPELLNTAESIK
                     LQAGEYTVGKDIKVGIYDMQVTKGSLSYYSTRLSKGDEIIGINLLDANKLYFEGSGEV
                     ELTPAEFNPIKPSANIFTIQHSGSYEVGKQIPAGKYSLTYTIDKSSKKKPFIQILPSY
                     TDDARIE"
BASE COUNT          404 a          185 c          190 g          321 t
ORIGIN      
        1 aaaaaaatca agaggacgga agtgcttact aatattaatt attcttttga gcctgggaaa
       61 atctacggag ttttcggaaa aaatggatct ggaaaaacaa tgttacttag atcgcttgct
      121 ggcttaatca taccaacaag tggcaagata ttcattgata ataaagaact tcatcatgat
      181 atttcttttc cgccaagtat gggcattatt atcgaaaata tggaattact tccccaattt
      241 gatgcgcgga caaatttaaa aatattatct aaaattaaaa atattgcaag cgatgaagat
      301 attgataatg ccattgatag agtaggatta tctccacata ttgataaaaa agttaaaaaa
      361 tattcgcttg gaatgaagca aagacttaat attgcacagg ccgtttttga aaaacccgct
      421 gtcatcttgc ttgatgaacc cacaaatgcg atagatgatc aaggtattga actaattaac
      481 caattacttt tagaagaaaa gaaacgcgga gccactatta ttattgcaag tcatcataaa
      541 gaagacatag aaccactttg tgatatgagt atccgaatgg accaagggaa aattatccat
      601 gactaagacc aaattcgtta ttttcatagc actgacagtc attacactgc ttctattcct
      661 cgttcctaaa ggtattcaat atctcaaaag ccaaaatcct gagctattga atacagctga
      721 aagcattaaa cttcaagctg gtgaatacac tgttggaaaa gatataaaag ttggaatata
      781 tgatatgcaa gtaacaaagg gttcgctatc ttactatagt acaaggcttt ctaaaggcga
      841 tgaaataatt ggtattaatt tactagatgc taataaactg tattttgaag gaagcggtga
      901 agtcgagctt acaccggcag aatttaatcc cattaaacct tctgccaata tttttacaat
      961 ccaacactcc gggtcttacg aagttggtaa acaaattcca gctgggaagt acagcctgac
     1021 ttataccatt gacaaaagta gtaagaaaaa accttttatt caaatattac catcttatac
     1081 tgatgacgct cgtattgaaa
//
LOCUS       DASDXX010000344         1097 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.346, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000344 DASDXX010000000
VERSION     DASDXX010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.346"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..146)
                     /locus_tag="U0280_002949"
     CDS             complement(<1..146)
                     /locus_tag="U0280_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272849.1"
                     /translation="MKKSWPDFAAFLLTILTVTWIILTWGLHISDIVPGGEKGVWYKL
                     IPLF"
     gene            complement(232..972)
                     /locus_tag="U0280_002950"
     CDS             complement(232..972)
                     /locus_tag="U0280_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM2272850.1"
                     /translation="MDIITYFLIALSTSVVGSFLGIGGGVILLPILLLMGVSQGTAAF
                     SSALTVFTMAIFTCSIYYKRKQGNVGLALKIAVTSIPTTFLGAMVNQMLPEAVYRFLY
                     GALIVVLLGIMIWKKKRHNEKPHFLSEYRIIPYVFGVIIGFLAGLFGIGGGPIVIPIL
                     LLIFMLNQKTASATSSYVTLLTSLASIGSYAIIGGSDFSIGIYMIPGAIIGALIGTRL
                     NKLLDEKWIAILFNVLLIALFALNLIKI"
BASE COUNT          383 a          235 c          160 g          319 t
ORIGIN      
        1 aaaaagagtg gaattaattt ataccaaacg cctttttctc ctcctggtac aatgtcagaa
       61 atatgtaatc cccatgttaa tattatccaa gttacagtta ggattgtcag taaaaatgca
      121 gcaaaatctg gccaactttt tttcatctta aaccctccta ctctctctaa gcttaacata
      181 aaacaagcca tgacaacaaa aaaacaagct acattcatag cttgtccgag gttaaatctt
      241 aattaaattt aaagcaaaaa gggcgataag taaaacattg aatagaatcg caatccattt
      301 ttcatccagg agtttattta atcttgtgcc aattagcgca ccgatgattg cccctggtat
      361 catgtaaata ccaatcgaaa agtcacttcc accaatgatt gcataggaac cgatacttgc
      421 aagggacgtc agtaatgtca cataactgga tgtcgcggat gccgtttttt gattcaacat
      481 gaaaattaac agcaaaattg gtataacgat tggcccgcca ccaataccaa ataagccagc
      541 taaaaaaccg ataattacac cgaatacata tggaattatc cgatattcac ttaaaaaatg
      601 tggtttttca ttatgccgtt tctttttcca aatcattatc cctagtaaaa caacgattaa
      661 tgctccgtac aaaaagcgat aaactgcttc tggcaacatt tgattcacca ttgcgccaag
      721 aaaagtcgtc gggatactag ttacggcaat tttcagtgcc aagcctacat tcccttgctt
      781 tctcttgtaa taaatactac aagtgaaaat cgccatcgtg aacacagtaa gagccgaact
      841 aaatgctgct gttccttgag aaacacccat taagagtaga attggcaaaa gaataactcc
      901 gccacctatt cctaaaaaac tccctaccac acttgtactt agtgcaatta gaaagtacgt
      961 aattatatcc attatacttt acctctcttc tttcaactgt ttcagcataa catatttcca
     1021 aaatttaaaa gtactaaaaa aagacaataa gttattgtct tttgcatttt aaatactcgg
     1081 aatcggttcc acgatca
//
LOCUS       DASDXX010000345         1097 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.347, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000345 DASDXX010000000
VERSION     DASDXX010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.347"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            27..>1097
                     /locus_tag="U0280_002951"
     CDS             27..>1097
                     /locus_tag="U0280_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEM2272851.1"
                     /translation="MGEMTLAFIEEQYKELDNLNNKENPAVLTRNTSTGELFVRKIIP
                     SSFAPVIEQLKDLSSKYLPKIEVMIPNGNQLIVYEEYINGKNLADLMKANATFDADEV
                     TRLMLMLSDALTELHANAIIHRDIKPSNIMISSDGVLKLIDFDASRVFEVGKNQDTVN
                     LGTIGYAAPEQYGYSQTDVRSDIYSIGVLMLELLLGKNTLPDKEHATSLEKIAMQAAA
                     FDPEQRYQSIQDFRTAVKNDSLGPSYVSELSDFTELDNFSTESDWENVSADYEKDFVP
                     WYKHIPGFRTGTPWKMIVGVLGYIFLLFGLFTPPTEGVKMSPIVNFFNNFFLIVPAFV
                     IFTNLCGIWSKLPLLKSSSPGTR"
BASE COUNT          355 a          203 c          201 g          338 t
ORIGIN      
        1 taaagtatag aaggggtttt agataaatgg gagaaatgac actcgctttt atagaagaac
       61 aatacaaaga attagataat ctaaataata aagaaaaccc tgctgtgcta acgagaaata
      121 catctactgg agaattattt gtccgtaaaa taattccaag cagttttgcc cctgtgatcg
      181 aacagcttaa agatttatct agtaaatatt tgccaaaaat cgaagtgatg attccaaatg
      241 gcaatcaatt aattgtttat gaagaataca taaatggaaa aaatttggct gatttaatga
      301 aagcaaatgc tacgtttgat gcggatgaag ttacgcggtt aatgctgatg ctatctgatg
      361 cacttacaga attacacgct aatgcgatta ttcaccgaga tattaagcca tcaaacatta
      421 tgatatctag cgacggcgta ttaaaattaa ttgattttga tgcttcccgt gtatttgaag
      481 tcggtaaaaa tcaagacact gtcaacctcg gcacaatcgg ttacgctgct cccgaacaat
      541 acggctattc acaaacagac gtgaggtcgg acatatacag tatcggtgtt cttatgctcg
      601 aacttttatt aggaaaaaat actttaccag ataaagaaca tgccacttcg cttgaaaaaa
      661 ttgcgatgca agcagctgcc tttgatcctg aacagcgtta tcaatccatt caagatttca
      721 ggacagccgt caaaaacgac tcacttggcc caagctacgt ctctgaatta tccgatttta
      781 ctgagttaga taatttttct actgaatctg actgggaaaa tgtatccgcg gattacgaaa
      841 aggactttgt tccatggtat aaacatattc ccggttttag aacagggaca ccttggaaaa
      901 tgattgtcgg cgtattaggt tatatattct tgctatttgg tttattcacc ccgccaaccg
      961 agggcgtcaa aatgtcgcca atagtaaact tttttaacaa tttctttctt atcgttcctg
     1021 cttttgtcat ttttactaat ctttgtggta tttggtccaa attaccttta cttaaatcat
     1081 cctctcctgg tacaaga
//
LOCUS       DASDXX010000346         1096 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.348, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000346 DASDXX010000000
VERSION     DASDXX010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.348"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            94..888
                     /locus_tag="U0280_002952"
                     /pseudo
     CDS             94..888
                     /locus_tag="U0280_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917489.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            894..>1096
                     /locus_tag="U0280_002953"
     CDS             894..>1096
                     /locus_tag="U0280_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272852.1"
                     /translation="MINSRFYEGFEGEAEISFVAGDNKLVIWNGYFETILDNLLDCNV
                     EREGVLKEFFNHEGWYDDSPWMI"
BASE COUNT          415 a          161 c          234 g          286 t
ORIGIN      
        1 ttttgacatt taaagttaac tcattccaat cattctctat gtagcagtat atattcttta
       61 tttacttcac tttcaaaacc ttcctcatag cctcggatgc aaaacgcctt aggaaaagcg
      121 ctaaaaaaca acgaaacaac attcaatttt gacgaatatc aaaaaacgta ccgtggtcaa
      181 atgtgggtgc taatgaaaaa tggtatagta gatgttgaag caacgaacgc gtacaatgcc
      241 gccgtgctta acggggaatt accacatgaa agcaatgaag cgcaagaaga agccgagttg
      301 ttgcaggcag ttattcaatc ggtgaaagaa ggaatagacc cggttactgg gcaagagata
      361 agtaaagcgc aagggtttag tattataagt ggctttatct tttactacac ttctggtggg
      421 tataaaggaa aaaaattgaa gattcctaaa aaattattaa acaatattaa gaataggcgt
      481 tcgaaagcac ccaaactatc tactttatcc gaaaaggaac aattgaaact agcaaataaa
      541 tacaagaaaa aagcaccaat cgcaattcca gataacgcta aaataaaagc ccagacaaaa
      601 aaagctggct atgaacaaat tacttataaa tggaatgatg gtcaatttaa gtatgaagtg
      661 cgatggcata caagaactcc agaagcacct ttagagcagg ggaatacatg ggttgtccaa
      721 agaacagttc ctggaaatgg aggggacaag ccacaaacat tcttcaaaat tggtgatgat
      781 gagtgggtag aaggatataa atggtatgat gctataaacg caagaaaagc aggaaatgct
      841 actccagaac aaataaaaat tttagataaa ggtcattgga aggaatgaac taaatgatta
      901 atagtaggtt ttatgaaggt tttgaaggag aagcagagat ttccttcgtt gctggtgata
      961 ataaacttgt aatttggaac ggttattttg agactatttt agataactta ttagattgta
     1021 atgtagaaag agagggagtt ctgaaagaat tctttaatca tgagggatgg tatgatgatt
     1081 caccgtggat gattga
//
LOCUS       DASDXX010000347         1072 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.349, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000347 DASDXX010000000
VERSION     DASDXX010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.349"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(101..>1072)
                     /locus_tag="U0280_002954"
     CDS             complement(101..>1072)
                     /locus_tag="U0280_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM2272853.1"
                     /translation="FLTVVVPCYNEEEVLSESVTQLTNIIEKLVMSESISDKSQIMFV
                     DDGSKDRTWELIQQYSESNEHVSGLKLSRNYGHQGALLAGLTEAHAYSDCVVSIDADL
                     QDDVNAIIEFIEKYHEGYDVVYGVRDKRDTDTYFKRNSALAFYRIMSKLGVNMVPNHA
                     DYRLLSKRALTEFLRYKEENMFIRGIVPLLGFKSTKVFYNRNERFAGESKYPLKKMVL
                     FAVDGITSFSVAPIRLLLVLGSVIFMIGVVMGIYAIVQKIIGAVVPGWTSLIVSLWLI
                     GGIQLIGIGVLGEYIGKIFKQVKERPRFTIEENVFETKCKENKISER"
BASE COUNT          356 a          218 c          136 g          362 t
ORIGIN      
        1 tctagcggtt taaaaatgct tatgcaaagt aagtaaccaa aaataagtat aaaaaacgca
       61 ttaaaaatat aagctaacct attcttcact ctctttacac ctatctctcg ctgattttat
      121 tttctttgca ttttgtttca aaaacattct cttcaatagt aaaacgaggt cgttctttta
      181 cttgtttaaa gatttttcca atgtattcac ctagaacacc aataccaatt aattgaattc
      241 cgccaattaa ccacaaggaa acaattaaag atgtccaacc aggtacaaca gcaccaatga
      301 ttttttgaac aatggcataa atccccatta ctacgcctat cataaaaata acagatccaa
      361 ggactaataa taatcgaatg ggtgcaacac tgaaagatgt aattccatcc acagcaaata
      421 aaaccatttt cttaagtgga tattttgatt ctcctgcaaa tctctcattt cgattgtaaa
      481 atactttcgt agatttgaaa cctaataatg gtacaatgcc tcgaataaac atgttttctt
      541 ctttataacg taagaattct gttaatgcac gcttgctaag cagtcgatag tccgcatgat
      601 ttggaaccat attaactcct agtttgctca taattctata gaaagctaac gctgaatttc
      661 ttttgaagta agtgtcagtg tcacgtttat ctcgtacgcc ataaacgaca tcgtaacctt
      721 catgatattt ttctataaac tcaataatcg cattcacatc atcttgtaaa tcagcatcaa
      781 tagacacgac acaatctgaa tatgcatgtg cttctgttaa gccagcaagt aaagctcctt
      841 gatgtccata attccgactt aattttagtc cagatacatg ttcatttgat tctgagtatt
      901 gctgtataag ttcccaagtt ctatctttac ttccatcatc tacaaacata atttgacttt
      961 tgtcactgat tgattcactc atcactaatt tttctataat atttgttagt tgtgtaacac
     1021 tctcgctcag aacttcttct tcattataac aaggtaccac aactgttaaa aa
//
LOCUS       DASDXX010000348         1071 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.350, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000348 DASDXX010000000
VERSION     DASDXX010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.350"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            26..391
                     /locus_tag="U0280_002955"
     CDS             26..391
                     /locus_tag="U0280_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272854.1"
                     /translation="MTSKQKEFIDQLLLEKEWELTNDLQSYNDGEVTQEVAANIIEYL
                     ISCEDTANAAAIRVEMMNRMTDRQRNFINELISEKIWETTSEIQIFLSSNNTEVDKYT
                     ASIIIEYLLSCKNKYNLAI"
     gene            405..608
                     /locus_tag="U0280_002956"
     CDS             405..608
                     /locus_tag="U0280_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272855.1"
                     /translation="MMNLKTIFEKWGYGHLKEEIEDLEDGYEVVINVVDRDTFNLMND
                     LNESTKFTVYEDCINDTITIAHS"
     gene            638..859
                     /locus_tag="U0280_002957"
     CDS             638..859
                     /locus_tag="U0280_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272856.1"
                     /translation="MAGFIKKYLESKDWTIYQLGNATGLAHQTIRSADSKTVDQISAK
                     NVRLIAEVFKCTPGELLDEFYKIEEEIMR"
     gene            complement(921..>1071)
                     /locus_tag="U0280_002958"
     CDS             complement(921..>1071)
                     /locus_tag="U0280_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2272857.1"
                     /translation="AGTVNKGIGFPTIVEKIKVGTAYQYKVKNSKGATFYITASDKYV
                     ELKNK"
BASE COUNT          414 a          139 c          207 g          311 t
ORIGIN      
        1 ataaagggtg attgaaatgg cagagatgac tagcaagcaa aaagaattta tagaccaatt
       61 actattagaa aaagaatggg aactaaccaa tgatttacaa tcatataatg atggtgaagt
      121 aactcaggaa gttgcagcaa atatcattga atacttaata tcttgtgagg atacggcgaa
      181 cgcagcagcg attagagtgg aaatgatgaa tagaatgact gatagacaga ggaatttcat
      241 taacgaatta atatcagaaa aaatctggga aacaacttcc gaaatacaaa ttttccttag
      301 ttcgaataat acagaagttg ataaatatac agcatcaata attattgagt acttactatc
      361 ttgcaaaaat aaatataact tggcaattta aaaggaggaa gttaatgatg aatttaaaaa
      421 ctattttcga aaaatggggc tacgggcatc tgaaggaaga gattgaagat ttagaggatg
      481 gttatgaagt agtaataaat gtagtagata gagatacttt taatcttatg aatgatttaa
      541 acgaatcaac taaatttaca gtttatgaag attgcataaa cgatactatt acaatagctc
      601 atagctaaaa attaaatata gagaggaata gtgaaaaatg gcagggttta taaaaaaata
      661 cttagaaagt aaagattgga caatttatca gctaggtaat gcaacgggac ttgcacatca
      721 aacaataaga agtgctgact caaaaactgt agaccaaata tctgcgaaaa atgtgcgttt
      781 aatagcagag gtctttaaat gcactcctgg cgaattgtta gatgaattct acaaaatcga
      841 agaagaaata atgcgctaag cttttgttta gcgtattttt tgcataaaaa aagcccccgc
      901 acaaagcgag ggtttgttta ttatttgttt ttaagctcta catatttatc acttgcagtg
      961 atgtaaaaag tagcgccttt tgaattttta actttgtatt gataagccgt gccgacttta
     1021 attttttcga caatcgtcgg gaagccaatg cctttattaa cagtgcctgc t
//
LOCUS       DASDXX010000349         1052 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.351, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000349 DASDXX010000000
VERSION     DASDXX010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.351"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1052
                     /locus_tag="U0280_002959"
     CDS             <1..>1052
                     /locus_tag="U0280_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2272858.1"
                     /translation="QNTNENVPYKYTSTLTFPTLTNQTQEDYKLEIKLALPTGMNYTG
                     LQVSVGGEDITNQVGTTSFDNSTNTVTFKFDKVTSWDSLSKAKVKFDWKTSYSGEGGE
                     AKIDSLVATATATSEDKAGNKSTSTGSLKPKDISAPVVKADKTEVTYNLGSNVTEEQF
                     LTDINASVTDNYDSTISLTSNFTSIVNLAVSGDYSVNVQATDKAGNVSNTVNVTVHVA
                     TPAPVAGANITVNYLDSDGNKLAESDTLTGTIDSNYQSTSKKISGYTLETTPKNATGT
                     FTDTPQTVDYIYKKDTVTPTPIVDPVNPVDPVDPVVNKPVIVTPNTDQVTTSNSVEKT
                     TYNSLPKTGDTDQSTAT"
BASE COUNT          382 a          223 c          185 g          262 t
ORIGIN      
        1 caaaatacca atgagaatgt cccatataaa tacacatcca ctcttacatt tccaacttta
       61 acgaatcaaa cccaggaaga ctataaactg gaaataaaat tagccctacc aactggcatg
      121 aactatacgg gcttgcaggt ttctgttggt ggggaagaca ttacaaacca agttgggaca
      181 actagctttg acaattccac taacactgtt acttttaaat tcgacaaagt aacaagttgg
      241 gatagtttat ccaaagcaaa agtaaagttc gactggaaaa cttcttattc aggtgaaggc
      301 ggggaagcaa aaatcgattc tttagttgcg accgcaacag ctacaagcga agacaaagct
      361 ggtaacaaat ctacctctac tggctcttta aaaccaaaag atattagcgc accagttgtc
      421 aaagcagata aaacagaggt tacgtataat cttggaagca acgttaccga agagcaattt
      481 ttaacagaca ttaatgctag cgttactgat aattatgact ccactattag tcttacaagc
      541 aattttactt ccatagttaa tttagcagtg agtggtgatt actcggtcaa tgttcaagca
      601 accgataaag ctggcaacgt ctcaaatact gtaaatgtca ccgttcatgt agcaactccg
      661 gcacctgtag ccggagcgaa cataacggtc aactatcttg atagcgatgg aaataaactc
      721 gcagaatcag acacattgac gggaactatc gatagtaatt accaatctac aagtaaaaaa
      781 attagcgggt acactctaga aaccacacca aaaaatgcaa ctggtacttt cactgatacc
      841 ccgcaaaccg ttgattatat ttataaaaaa gataccgtta ccccaacacc tatagttgat
      901 ccggtcaatc cagttgaccc agttgaccct gtagtaaata aaccagtcat tgtgacacca
      961 aatacggatc aagttactac tagtaattca gtagaaaaaa caacttataa ttctttaccg
     1021 aaaacgggtg atacagatca aagtacagca ac
//
LOCUS       DASDXX010000350         1049 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.352, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000350 DASDXX010000000
VERSION     DASDXX010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.352"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            24..>1049
                     /locus_tag="U0280_002960"
     CDS             24..>1049
                     /locus_tag="U0280_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2272859.1"
                     /translation="MKLEDIARLANVSKSAVSLALNGKAGVSEETRLHILQIVEENNY
                     VPLRNTNKKMKKKSTIRFIACKSPNLITEQYQNLPFFSELLSYLSAEIASYPYDLVIS
                     TFDATTILEELAEAEKEQPTAGLILLGTNLNAEEINRIQQEYPKIVVLDTHHPHISAN
                     FVSINNFLGGYKAADYLLQLAHTKIGYVMGVPRIKNFDERKSGFFARLEEADISVPEQ
                     HVFHLPAMQIQEEVSVKEAIAELQDLPSALFCENDYMAISMIKMLQSLSIKVPEQVSV
                     LGFDNINESKVITPELTTVHVKKRDIAEQTLALLSKQIKADTNFETRQIQVNTSLIER
                     TSCVPFKK"
BASE COUNT          371 a          202 c          178 g          298 t
ORIGIN      
        1 tagtaaacaa ggagaaatga ataatgaagc tggaagatat tgcacgatta gcaaacgttt
       61 cgaaatcggc cgtttccctt gcgctgaatg gaaaagctgg cgtaagtgaa gaaacccgtt
      121 tacatattct gcaaattgtc gaggaaaata attacgtccc gttacgtaat accaataaaa
      181 aaatgaaaaa gaaatcaacc attcgtttta tcgcatgcaa aagtcctaac ttgattaccg
      241 aacaatatca gaacttacct tttttcagtg agctacttag ctatttatct gctgaaatcg
      301 ctagttaccc atatgatttg gttatctcta ccttcgatgc aacaaccata ttagaagaac
      361 ttgctgaagc agaaaaagag caaccaacag caggcctgat tttacttggc actaatttaa
      421 acgctgaaga aattaaccga atacaacagg aatatcctaa aatcgttgtc ttagatacac
      481 accatccaca tatctcagcc aactttgtct ctattaataa ttttctcggt ggatataaag
      541 cagctgacta ccttttacaa ctagcacata caaaaattgg ttatgtgatg ggggtaccac
      601 gcattaaaaa ttttgatgag cggaaaagtg gcttttttgc tcgtttagaa gaagccgata
      661 tttcagtccc tgaacaacat gtctttcatt taccagcaat gcaaatccaa gaggaagttt
      721 cggtaaaaga agccattgct gaattgcaag atttaccctc tgctcttttt tgcgaaaatg
      781 attacatggc tattagcatg attaaaatgc tacaaagtct atctatcaaa gtccctgaac
      841 aagtttccgt attaggtttt gacaatatta atgaaagtaa agtaattaca ccagaactaa
      901 ccactgttca tgttaaaaaa cgtgatattg ctgaacaaac acttgccctt ttgtccaaac
      961 aaattaaagc tgatacgaat tttgaaacca gacaaatcca agtgaataca agcttaatcg
     1021 aaagaactag ctgtgttccg ttcaaaaaa
//
LOCUS       DASDXX010000351         1030 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.353, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000351 DASDXX010000000
VERSION     DASDXX010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.353"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(65..934)
                     /locus_tag="U0280_002961"
     CDS             complement(65..934)
                     /locus_tag="U0280_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM2272860.1"
                     /translation="MKYRKLSKKKKQKRLIGIAGILLLVILVGVIASVVRQQYLIMTA
                     PEPDPAFHSKEQNFLNELSPRAQEIQEKHGILTSITLAQAILESDWGQSGLAQKGNNL
                     FGVKGKSPQPMVTMTTKEFVDGKWIEINANFRKYKDWNESLDSHAELFLKGTSWNKDK
                     YNGVIAADDYKKAAQELQSAGYATDPDYAEKLINIIEKYDLALYDRIEDKIYYDTKST
                     GFGNVKKDVSGAIWTKPYGLSGALKVEEINYYKREDLKLLREAKTDSGVWYQIAIDTE
                     PIGWVKQELIDKK"
BASE COUNT          266 a          206 c          169 g          389 t
ORIGIN      
        1 gagcttaaaa aggactttat gcctataaat aagacaagtc attttgctct ttttcggtta
       61 ttttttactt tttatcgatt aattcttgtt tcacccaacc aatcggctcg gtatctattg
      121 caatttgata ccaaacaccg ctatcggtct ttgcttcacg taaaagtttc aaatcttcac
      181 gtttatagta gttaatttct tctactttta gcgcgccgga aagtccatat ggtttcgtcc
      241 aaattgcgcc agatacatct tttttcacat tgccgaagcc agttgatttt gtatcataat
      301 agattttatc ttcaattcgg tcgtataatg ctaaatcata tttttcgata atattgatta
      361 atttctccgc ataatctggg tcagttgcat agccagctga ttgtaattct tgcgcggctt
      421 ttttataatc atctgcagca attactccat tatatttatc tttattccaa gaagtgccct
      481 tcaaaaaaag ttcagcgtgc gaatcgagtg actcattcca gtctttatat tttcggaaat
      541 tagcattaat ttcaatccat ttaccatcaa caaattcttt cgttgtcatc gtcaccattg
      601 gttgtggcga ttttcctttg acaccaaata gattgttacc tttttgcgct aaaccgcttt
      661 ggccccagtc tgattcgaga atggcttgag cgagtgtaat actcgttaag ataccgtgct
      721 tttcttgaat ttcttgtgca cgtggcgaaa gttcatttaa aaagttttgt tctttggaat
      781 gaaatgctgg atccggttct ggtgcagtca taattaggta ttgctgtcta acaactgatg
      841 caatgacacc tactagaatt actagaagta aaattcccgc tattccaatt agcctctttt
      901 gtttcttctt tttagataat ttcctatatt tcagatgtcg tcacgccttt ctgtctacga
      961 atcccttgat ggtactagaa tacgttactt tcattacaat tgcaatccat ctaggggtct
     1021 attttagtga
//
LOCUS       DASDXX010000352         1027 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.354, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000352 DASDXX010000000
VERSION     DASDXX010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.354"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..910)
                     /locus_tag="U0280_002962"
     CDS             complement(<1..910)
                     /locus_tag="U0280_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEM2272861.1"
                     /translation="MEFLLILLPVFGIFAIGFIGQKTLKFDIPNLSKLTLYLMSPFLA
                     FNTFYTNALTIDYAYLAIYIFALCLSLILLVSLISFLLGYNLQDRCALILASAFMNNG
                     NYGTPVVLLVFGAVGLDIAVVLMVLQQLAMSTIGIYFAAKGSKDANGMKTVMKRVVRM
                     PIAYGALLGLTLQLLHVSLPSALMTCVKLVGDAAIPTIMIVLGMQLAVISFRRIELTK
                     VGIALVLKLLIAPIIAFGLTLILPVDEMTKQIMILLAAMPTAANTTLMAVQFDTKPDL
                     VSSATFISTVLSIITLPIVLYFLHPVF"
BASE COUNT          382 a          191 c          176 g          278 t
ORIGIN      
        1 agaaaactgg atgaagaaaa tagagcacaa tgggtaaggt aataatactt aaaactgtac
       61 taataaatgt ggcactagaa actaaatctg gttttgtatc aaattgtaca gccattaaag
      121 tagtattcgc tgcagttggc atagctgcaa gtaaaatcat aatttgtttt gtcatttcgt
      181 caacagggag aatcaacgtt aaaccaaacg caatgattgg agcaatgagt aatttgagta
      241 ctaatgcaat gcctactttt gtaagttcga ttcgtctaaa cgaaataact gccaactgca
      301 ttccaaggac aatcataatt gttggaatag cagcgtcgcc aacaagtttt acgcaagtca
      361 ttaaagcgga tggaagtgaa acatgaagta attgaagcgt aagcccgagt aaagccccgt
      421 aagcaatcgg catccgaaca acccgtttca tgaccgtttt cattccattt gcatctttac
      481 ttccttttgc ggcaaaataa atcccaatgg tactcatagc tagttgctgc aacaccatta
      541 atacaacagc aatatcaagc ccaacagccc caaaaacaag caagacaaca ggtgttccat
      601 aatttccatt attcataaaa gcactagcca aaatgagcgc gcaacgatct tgcaagttat
      661 aaccaagcaa aaaactaatt aaactgacaa gcaaaatcaa actcagacaa agcgcaaaaa
      721 tgtaaatcgc caaatatgca taatctatcg ttagcgcatt ggtataaaaa gtattaaatg
      781 caagaaacgg tgacattaag taaagcgtga gtttagataa gttaggaata tcaaatttta
      841 aagtcttttg tccaataaac ccaatagcga agatcccaaa aactggaagt aaaataagta
      901 gaaattccat ggcgcccctc ttttctatgt atattgtagc ttattgtacc ataaaatgaa
      961 gtttcagtta gacactttta catgttacca gtttagtatt tatcttaatc taacagttat
     1021 tttagaa
//
LOCUS       DASDXX010000353         1000 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.355, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000353 DASDXX010000000
VERSION     DASDXX010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.355"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1000
                     /locus_tag="U0280_002963"
     CDS             <1..>1000
                     /locus_tag="U0280_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2272862.1"
                     /translation="LPFKFYQNNKVLMLIVFGSIGVLLLIFLVGKTVNNANSWLVLGP
                     RSLQPGEFAKLAVIIYMSAIYAKKQSYIDDFNRGVLPPIFFLAFVCFLIAIQPDTGTA
                     FIIFLVGCCIIITSGMRLRTIMKLIGIGMGIIIGLTLILFALPDSVRNEIVSPTKVAR
                     ITTFMNPFEYADKEGHQLINSFYAIGSGGVSGQGLGESVQKLGYLPEAHTDFIIAVVA
                     EELGVFGVMFIILALFFIIFKTITTGLRAKDPFASLMCYGIASLIAIQAFINLGGASG
                     LIPLTGVTLPFISYGGSSLMVLSMMLGIVANISMFTKYQRVYKADGSTRELPKKQKR"
BASE COUNT          262 a          168 c          215 g          355 t
ORIGIN      
        1 ttgccattta aattttatca aaataataaa gtgttaatgt taattgtatt tggatccatc
       61 ggtgtcttat tactgatttt cttagtgggt aaaacggtaa ataatgcgaa cagttggctt
      121 gttttagggc cacgttctct tcaaccagga gaatttgcta aattagccgt aattatttac
      181 atgtctgcca tctatgcgaa gaaacaaagt tacattgatg attttaaccg tggtgtttta
      241 ccgcccatat tctttttagc atttgtatgt ttcttgattg ccattcagcc agatactggg
      301 acagctttta ttattttctt agttggttgt tgtattatta tcacttctgg aatgcgactt
      361 cgaacgatta tgaaattaat tgggattggt atgggtatta ttattggact cacgctcatc
      421 ttattcgcac taccggatag tgtgaggaat gaaattgttt ctccaacgaa agtagctcgt
      481 attacgactt ttatgaaccc ttttgagtat gcggataaag aagggcacca gttaattaat
      541 tccttctatg cgattggctc aggtggtgtt tctggacaag ggcttggcga aagcgttcaa
      601 aaacttggtt acttgccgga agcacacacc gattttatta ttgccgttgt tgcagaagaa
      661 ttaggtgtgt tcggtgtgat gtttattatt ttggcactgt tcttcattat ctttaaaact
      721 atcacgaccg gactcagggc gaaggatcca tttgcctcct taatgtgcta cgggattgct
      781 agtctgattg cgattcaagc atttattaat cttggtggag ctagtggttt gattccgctt
      841 actggtgtaa cgctgccatt tattagttat ggtggatctt ccttaatggt gctctcgatg
      901 atgcttggta tcgtagcgaa tatttcaatg ttcactaaat accaacgtgt ttataaagca
      961 gatggttcca cgagagagtt accaaagaaa caaaaaagac
//
LOCUS       DASDXX010000354          998 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.356, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000354 DASDXX010000000
VERSION     DASDXX010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.356"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            32..895
                     /locus_tag="U0280_002964"
     CDS             32..895
                     /locus_tag="U0280_002964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliC/FljB family flagellin"
                     /protein_id="HEM2272863.1"
                     /translation="MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAA
                     GLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSF
                     SDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN
                     IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLG
                     AGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQ
                     TPQMLTQLINS"
BASE COUNT          326 a          208 c          174 g          290 t
ORIGIN      
        1 tttctaaacc gaatgtagga gggaaacaca aatgaaagta aatactaata tcattagctt
       61 gaaaacacaa gaatatcttc gtaaaaataa cgaaggcatg actcaagcgc aagaacgttt
      121 ggcatctggt aaacgtatta acagttctct tgatgacgct gctggtcttg cagttgttac
      181 tcgtatgaac gttaaatcta caggcttaga tgcagcaagc aaaaactcat ccatgggtat
      241 tgacttgtta caaacagcgg attcagctct tagctccatg agttcaatct tgcaacgtat
      301 gcgtcaatta gcagtacaat cttctaacgg ttcattcagt gacgaagatc gtaaacaata
      361 cactgctgaa ttcggtagct tgatcaaaga acttgatcac gttgctgaca ctactaacta
      421 caacaacatc aaattactag atcaaactgc tacaggtgct gctactcaag taagcatcca
      481 agcgtctgat aaagctaatg acttaatcaa tatcgatctt ttcaatgcga aaggtctttc
      541 tgctggaaca atcactttag gtagtggttc tacagttgct ggttatagtg cattatctgt
      601 tgctgatgct gattcttctc aagaagcaac ggaagctatt gatgaattaa tcaataacat
      661 ctctaacggt cgtgcacttc taggtgctgg tatgagtcgc cttagctaca atgtatctaa
      721 cgtgaacaac caatccatcg caactaaagc atctgcttcc tctattgaag atgcagatat
      781 ggctgctgaa atgtccgaaa tgactaaata caaaattctt acacaaacat ctatcagcat
      841 gctttctcaa gcaaaccaaa caccgcaaat gttaactcaa ttaattaaca gctaataaca
      901 tatcaaattc atttatcgaa cattgtttac ccttagcccc tcgtcacccc ggacgagggg
      961 cttttctttt tatttataaa aatatttttg gattacaa
//
LOCUS       DASDXX010000355          977 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.358, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000355 DASDXX010000000
VERSION     DASDXX010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.358"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(64..657)
                     /locus_tag="U0280_002965"
     CDS             complement(64..657)
                     /locus_tag="U0280_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2272864.1"
                     /translation="MPKLVTGYERQQTKNLIIEHTSHLIYIKKGIQGFTVEDITRAAR
                     IGKRKFYTCFPSKEACLFEVVEYSYQAQLEAFKKIMEEKGSLKSKMTRFLKEVYLSEK
                     SINNYFSPEDFHAILQKLPPTYTEREERMTSEVLETAMTYIDLTRAQWEALVMLLDCL
                     TYTATRSYVETAKKAKEETLDILINSIADYVEKQTQC"
BASE COUNT          285 a          185 c          144 g          363 t
ORIGIN      
        1 tgacgcagca agctttcgtt cggtttcttt attcatttat ttaccctcct aaaatatttt
       61 tcgttagcac tgagtctgtt tttctacata atcagctata gaatttatta atatatccaa
      121 agtctcttct ttcgcttttt tggcagtttc tacataactc cttgtcgcag tgtaagtcaa
      181 acaatccagt aacatcacta aagcctccca ttgagctctc gtaagatcga tatacgtcat
      241 ggcagtttcc aggacttcac ttgtcattct ttcttctctt tccgtatatg ttggagggag
      301 tttttggagt attgcgtgga aatcttccgg tgaaaagtag ttatttatac tcttttctga
      361 aagatagact tctttcaaaa aacgagtcat cttgcttttt aacgaacctt tctcctccat
      421 aattttttta aatgcctcta attgtgcttg ataggaatat tccaccacct caaataggca
      481 tgcttctttg gagggaaaac acgtatagaa ttttcgcttt ccaatcctag ctgctcgagt
      541 aatatcctcc acagtaaaac cttgaattcc tttttttata taaattaaat ggcttgtatg
      601 ttcgataatg aggtttttag tttgttgacg ctcatatccc gtaacgagtt ttggcatttt
      661 gctcctcctt gaaaaatttc ttgcatatcg cttttaatgg aactatttat caatttccag
      721 ttctacaaaa acaccttaaa ctaaatattt aacaatgtca aatgaggtga aatggatttt
      781 ccacggttct tatatcgaat acgtttacta atagtttagt attagatttg aaaaaaatat
      841 tttatcaggt atatcttatc ttttacattt ttccaatctt acataaacgc tcccattgat
      901 gaagcaagta agattcaaag taaaacaaga aaaaagagaa gacaaaaatt tgtcttctct
      961 cttagaacgc caatgtt
//
LOCUS       DASDXX010000356          963 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.360, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000356 DASDXX010000000
VERSION     DASDXX010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.360"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            71..355
                     /locus_tag="U0280_002966"
     CDS             71..355
                     /locus_tag="U0280_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
                     /protein_id="HEM2272865.1"
                     /translation="MTKIRINKEKMINHATTLGDSAGKLDYYPLKNENMSYTQTNSIH
                     LLRESLLELLEGIENLGTVAQDDATRIKQMGEAFAKQDKSISQKMNLEVR"
     gene            397..708
                     /locus_tag="U0280_002967"
     CDS             397..708
                     /locus_tag="U0280_002967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272866.1"
                     /translation="MEREDDALYAIKNKIRHLEDMEEDIHQARREIDDILYHMKEVWR
                     GEHAEHTFWQIEDEVNHYNRRTACMTNDIHTELNNEQKKHRQNLHALETKQQDIKKEM
                     T"
     gene            711..851
                     /locus_tag="U0280_002968"
     CDS             711..851
                     /locus_tag="U0280_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272867.1"
                     /translation="MATKPTVENLYIAGTKQLTGFGREYEYLLQHGYTYDVKTSTMKL
                     KK"
BASE COUNT          399 a          155 c          181 g          228 t
ORIGIN      
        1 gacaatccaa gaaaatgtca ttataataga accatgatac aaccttcaca tacagaaagg
       61 gaaaacaacc atgacaaaaa ttcgtattaa taaagaaaaa atgattaatc atgccacaac
      121 cctaggtgat agtgcgggga aattagatta ctatcctttg aaaaatgaaa acatgagtta
      181 tacgcaaact aattctatcc accttcttcg agaatcatta cttgaactac ttgaaggcat
      241 cgaaaattta gggactgttg cacaagatga tgctactcga atcaagcaaa tgggggaagc
      301 ttttgcaaaa caagataaat ccatcagcca gaagatgaat ttggaggtgc gttaagtgga
      361 taaacgtacc caagaattag gtgaaataaa aaaaaaatgg agcgagaaga tgacgctcta
      421 tacgcgatta aaaataaaat tagacattta gaggatatgg aagaagatat tcatcaagct
      481 agacgcgaaa tcgatgacat cctttaccat atgaaagaag tttggcgagg agaacatgca
      541 gagcatactt tttggcaaat agaagacgag gtaaatcatt acaaccggag aactgcttgc
      601 atgactaacg atattcatac cgaactaaat aatgagcaaa aaaagcatcg acaaaatctc
      661 cacgcgctcg aaactaaaca acaggatatt aaaaaggaga tgacgtagct atggctacaa
      721 agccgactgt agaaaactta tacatcgctg ggactaaaca acttacgggt tttgggcgtg
      781 aatatgaata cttactacaa catggttata cttatgatgt aaaaacaagt acaatgaagt
      841 tgaagaaatg aggaattcaa gcatgaaatt agacgataat gtaaaagaaa taatccttaa
      901 aaaaagtgaa tttctactcc ataataattt taaattaata gaaataacgg atgctactat
      961 cac
//
LOCUS       DASDXX010000357          962 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.361, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000357 DASDXX010000000
VERSION     DASDXX010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.361"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(107..550)
                     /locus_tag="U0280_002969"
     CDS             complement(107..550)
                     /locus_tag="U0280_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM2272868.1"
                     /translation="METILEVVRIEQIIREAEEGVDYIIRSPEDGAKIASRFIGRDDR
                     EVFFVMCLNTKNNVVAVHRCHVGSLNSSIVHPREVFKSAILNNVASVILAHQHPSGDI
                     KPSMEDINVTKRLVEAGKLLGIEVLDHLIVNSDNSFTSLKERGYI"
BASE COUNT          285 a          195 c          151 g          331 t
ORIGIN      
        1 cgatttgcaa attaaattcc tttaggtgat gtttgaggtc tatcatttat aagatgtagt
       61 tcttacatct ctcatatctt gaagaaaagg gagttgtttc tcccttttaa atatagcctc
      121 tttctttcag gctagtaaaa ctgttatcac tatttactat taggtggtca agcacttcaa
      181 tgcctagtag ctttccagct tcgactaatc tcttagttac gttaatatct tccatcgatg
      241 gttttatgtc accacttgga tgctgatgtg caagaatgac acttgctaca ttattaagta
      301 ttgctgattt aaatacctcc cgtggatgaa caatcgagga atttaacgaa ccaacatgac
      361 aacgatgaac tgcaacaaca ttatttttcg tatttaaaca cataacaaaa aacacttcac
      421 gatcatcacg accaataaag cgagacgcta tctttgctcc gtcttctggg ctacgaatga
      481 tataatcaac accttcctct gcttctctaa taatttgttc gatgcgaact acttctaaaa
      541 tggtttccat ctagatcaac ctctctattt ttttgacctt tttggtcacc acagagagaa
      601 tcttcgcatc gattaatgtc aagtggctta agtagcaaag ctatcgagtg attcgtatat
      661 gttttgatga agcccaatga attagggtgc gttaaaagcg ttaattgctt tcttacgcac
      721 ccttatccta cttggctgac tcataacatc cgaagaacga agacccttta cttaatcgat
      781 aattcgtcta tgctttacag acgaattaga agattataat tggtagagct gaaaaggaaa
      841 aaaacaaaat gtagcctatt tacttgtttt ttatttgatt gattacactt tcttttaaat
      901 aatttgtcca atccatttta aagcctactg gaccaaattc tccctctatc atttcccttg
      961 gc
//
LOCUS       DASDXX010000358          954 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.362, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000358 DASDXX010000000
VERSION     DASDXX010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.362"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(143..553)
                     /locus_tag="U0280_002970"
     CDS             complement(143..553)
                     /locus_tag="U0280_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272869.1"
                     /translation="MNEATKERITKLNEYLITKLSENTGLNVYQDNVSETELNEEMNG
                     VYDYIIFSTGGFSKSDTSQFTLIQEVTVQVATENTSDLDGLQIDIITSLEGTGGAGPY
                     YFLNSTKGQVQKGQQDGYVDALELIFTRSFKYVC"
     gene            complement(546..884)
                     /locus_tag="U0280_002971"
     CDS             complement(546..884)
                     /locus_tag="U0280_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HEM2272870.1"
                     /translation="MQKVNHDTFNDGVLFYGISETLRDSNRKRIGTNFVSKGKLFYEE
                     VSMRDQDVMRINAMGKDLNLKIKTHYRKEATSYQKIQIEGVQYEVSYIDKDRNVRLFW
                     YLTRSGDENE"
BASE COUNT          286 a          188 c          117 g          363 t
ORIGIN      
        1 atttattctt ttttctatgt ttaacttcac aagtggaact gcttttgtct caagtgtttt
       61 attaataata gcttcagatt tgtttggaat ttgactaatc aaatttgaca atctttcaac
      121 atccgaaaac tctaaagacc atttagcaca catatttaaa tgaccttgta aagattaatt
      181 ccagtgcgtc tacatagcca tcttgttgcc ccttttgaac ttgaccttta gtagagttca
      241 aaaaataata aggaccagct ccaccggttc cttctaaact agtaattatg tcaatttgca
      301 atccatccaa atcactagta ttctctgttg ctacttgaac tgttacttct tgtatcaatg
      361 tgaattgtga ggtgtcactt tttgaaaatc caccagtgga aaaaatgata taatcgtaaa
      421 caccattcat ttcctcattt aattctgttt cgctaacgtt atcttgataa acatttaaac
      481 ctgtgttttc actaagtttc gtgattaaat actcgtttaa ttttgtaatt ctctcttttg
      541 tcgcctcatt cattttcatc acctgaccta gttaaatacc aaaataaacg cacatttctg
      601 tctttatcta tataacttac ttcatattga acaccttcaa tttggatttt ttgataagat
      661 gttgcctctt ttcgataatg agttttaatt tttaaattta aatcttttcc cattgcattg
      721 attctcataa catcttgatc acgcatagat acctcttcat aaaacaactt gcccttactg
      781 acaaaatttg ttcctattcg tttcctgtta gagtcgcgaa gtgtctccga tattccataa
      841 aacaagacac catcgttaaa agtgtcatga ttaaccttct gcattaatat tcaccgccac
      901 atcaaattgc aagctttgaa tttcacaaat aaagttttgt tgaaagtatt cata
//
LOCUS       DASDXX010000359          943 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.363, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000359 DASDXX010000000
VERSION     DASDXX010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.363"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(133..360)
                     /locus_tag="U0280_002972"
     CDS             complement(133..360)
                     /locus_tag="U0280_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272871.1"
                     /translation="MEYEQMADSLAYGEEYNFYYKNEEYWLSKNREGHYLTKVSDGET
                     QEFRTSEDLLGTARINGKLIIEIWENIQSQF"
     gene            complement(439..669)
                     /locus_tag="U0280_002973"
     CDS             complement(439..669)
                     /locus_tag="U0280_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM2272872.1"
                     /translation="MKQCPVCENYTIEANYDICEVCYWEYDVVAQEYPDEIIGANNIS
                     LKQAKINYAKFCAVEEKYITLVRKPRQDELPE"
BASE COUNT          283 a          192 c          101 g          367 t
ORIGIN      
        1 atggatttgt gtggtgtgcg tgtattatga atcgtcaact atgtaatctc gtatgttctt
       61 tcttagcatt tctaacaaaa aagctataac aactataaaa cacttgaaaa tgaaggtctc
      121 tatttcttca atttagaatt gactttgtat attttcccaa atttctatta taagttttcc
      181 atttattcta gctgttccta ataagtcttc tgaagtccta aattcttgtg tttctccatc
      241 ggatactttc gttaagtaat gtccttcccg atttttactt aaccaatatt cctcattttt
      301 gtagtaaaaa ttatattcct caccatatgc taaactatca gccatttgtt catattccat
      361 gcttctttcc ttctttcaga aacaggttct ctatttatta aaaaagcaca ttactttaaa
      421 ctccctctat ccgttcaatc actccggtag ttcatcctgt ctcggttttc gaacaagtgt
      481 aatatatttt tcctctactg cgcagaattt cgcataattt atttttgctt gttttaacga
      541 aatattatta gctcctataa tttcatccgg atactcttga gctaccacat catattccca
      601 gtagcatact tcgcaaatat cgtaattagc ttcaatcgta taattttcac aaactggaca
      661 ctgtttcaaa gttattcctc ctcatcattt cggataatat aaatcaattt gtttctccca
      721 atattttaat ccagcattag gtttgaaata tgtagatata gatccatact cgtttataat
      781 cccaaattca tttgttttag aatcatacct aaaatataat accctactaa atgttcataa
      841 ccttccaata atccacttgt tgtgaaaaac cctacatcca ataccttatc cattaatatt
      901 tttccaaaaa gctcataatt aaatttgtta aagtgctcaa atc
//
LOCUS       DASDXX010000360          942 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.364, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000360 DASDXX010000000
VERSION     DASDXX010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.364"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            65..>942
                     /locus_tag="U0280_002974"
     CDS             65..>942
                     /locus_tag="U0280_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272873.1"
                     /translation="MNLIGLRIKNIRKEKQLTLKDVAQGIISVPYLANIENGIKVASL
                     ETLIHIARRLEIPEEVLLMSEDEENRALLKELDEIFKLLVCSNPKEIESRLKKIAENV
                     ELQHESPAVELSFYCLQVAFYYKTWKFSRAEEVEAKYLKNAEKRVENAFPPQLLSYYY
                     YGQAVKHSHATCNYQLAVEYWEKCVALTDNKNFLTVFHVCICINYICQSIYEPALGHI
                     QQAWDLIKDEEQERFVSILYFYGYIYFQIGFIGEAKYRFKQAQKYFSKYPEAKKIYYF
                     VVQLKMAEIENIEGNET"
BASE COUNT          336 a          130 c          189 g          287 t
ORIGIN      
        1 gttgttttcc atttcgaaat gtttataatt aagaggaaaa tattgaaaaa acggcggtga
       61 catcatgaac ttaatcggtt tgcgaattaa aaatattcgt aaagagaaac agctgacatt
      121 aaaagacgta gcgcaaggaa ttatctctgt gccttattta gcaaatatag aaaatggtat
      181 taaagttgct tctttggaaa cgttgataca catagcaaga aggttagaaa taccggaaga
      241 agtgttattg atgagcgaag atgaagagaa tagagcactt ttgaaagaat tggatgagat
      301 ttttaaacta ttggtttgtt ctaatcctaa agaaatagaa agtagattaa agaaaatagc
      361 ggaaaatgta gagctgcagc acgaatcacc agctgtcgaa cttagctttt attgtttaca
      421 ggtggcattt tattataaga cttggaaatt ttcaagagcg gaagaagtgg aagctaaata
      481 tttaaagaac gcagaaaaac gagtggaaaa tgctttcccg ccccaattgc tttcctacta
      541 ttattacggt caggcagtaa aacattctca tgcaacgtgt aattatcaat tagcagtgga
      601 gtactgggaa aagtgtgttg ctctcactga taataaaaat tttctcactg tttttcatgt
      661 gtgcatctgc attaattata tttgccaaag tatttatgaa cctgcacttg gacatatcca
      721 gcaagcgtgg gatttaataa aggatgaaga gcaggaacgt tttgtctcta ttctttattt
      781 ctacggttac atttattttc aaattggctt tattggtgag gcaaaataca gatttaaaca
      841 agcacaaaag tacttttcca aatatccaga agctaaaaaa atctattatt tcgtcgttca
      901 gttaaaaatg gcagaaattg aaaatattga gggaaatgag ac
//
LOCUS       DASDXX010000361          899 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.365, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000361 DASDXX010000000
VERSION     DASDXX010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.365"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>899
                     /locus_tag="U0280_002975"
     CDS             <1..>899
                     /locus_tag="U0280_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HEM2272874.1"
                     /translation="SSSHNKTGLSAFISIDADMKPAIPREIKIAAPLFATLRSYITGS
                     NRLSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSISEGQIVAKRADKKANTFEYNV
                     EQVWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLRSANMPDLPILAPNTIDFSS
                     SGFFNVANNEFMAQLTRNDSNNLACLTAVAPKIKQDITKIAVMGTCFSRNAFNSSPFF
                     NPDYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEKPFIEDDWKKDFFTNL
                     KNSDADYFLIDLYPDVIRPVIWL"
BASE COUNT          321 a          155 c          137 g          286 t
ORIGIN      
        1 atcatctagt cataacaaaa caggcttatc tgcattcata tccattgatg cagatatgaa
       61 gccagctatt cctagagaaa ttaaaatagc agcgccactt tttgcaactc tgcgctccta
      121 tattacaggc tctaacagat tatcattcta tttcaaaaaa aatattcagg ggttagtgag
      181 tctgagtcaa ttaaaagaaa ctaaaaaaga tttgacactg caattcaaat tagaaaacag
      241 tatctctgaa ggtcaaatag tagctaaacg tgcagataaa aaagcgaata catttgaata
      301 taatgtagaa caagtatggc ctttaaagaa agggattact aaatatactg ctcaaattaa
      361 taaaaatgaa ttcttatccg gaccaatcaa tagagctgat gcgacatggg atttcttcct
      421 tcgttcggca aacatgccag atttacctat tttagcgcca aatactattg actttagttc
      481 ttcgggattt ttcaatgttg ctaataacga atttatggcg caattaacaa gaaacgactc
      541 caataattta gcttgtctta cagccgttgc tcctaaaatc aaacaagata taacaaaaat
      601 agctgtaatg ggaacttgtt ttagccgaaa tgcttttaac tcatctccat tctttaatcc
      661 agattataaa gctttttttg aatgcagttt tacgcagttt cattcttcta taattagtat
      721 aatgaccgaa cccgctaact taattaatct agataagtat actgatatta aaaaaagcga
      781 gaaacctttt atagaagatg attggaaaaa agatttcttt actaacctga aaaattctga
      841 cgctgattat ttcttaattg acctatatcc tgatgttatt cgaccagtta tttggttaa
//
LOCUS       DASDXX010000362          894 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.366, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000362 DASDXX010000000
VERSION     DASDXX010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.366"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(49..504)
                     /locus_tag="U0280_002976"
     CDS             complement(49..504)
                     /locus_tag="U0280_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MepB family protein"
                     /protein_id="HEM2272875.1"
                     /translation="MEYEQLLQSELGELEIIREELQNKEYRGMIVKTAKDGTMTRTRL
                     AKKTDKKAGYFVAFWEKDEFGKNCPFDENDSADFLCIVVIDDDLNGIFVFPRQCLIEK
                     GILTSEAGIGKMAARFYPTWCQDLNKTARKTQAWQQAYFKNYSIRKEDH"
     gene            complement(504..>894)
                     /locus_tag="U0280_002977"
     CDS             complement(504..>894)
                     /locus_tag="U0280_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2272876.1"
                     /translation="IWEKSVIATHDFLAAEDRQFYKEQIPLFLDNVELFLWFAGEEVV
                     GFSGTSERELDMLFLEPIATGNGYGSQILSWLIENKQINLVDVNEQNENATRFYLKHG
                     FVVSSRSDADGFGKPYPILHLQLKGES"
BASE COUNT          281 a          225 c          103 g          285 t
ORIGIN      
        1 tagattactg cgagcaagta ttttctaaac aataaaaaga agacccaatt aatggtcttc
       61 ttttcttata gaataatttt taaaatacgc ctgttgccaa gcttgcgttt ttctcgctgt
      121 tttatttaaa tcctgacacc acgttggata aaatctagca gccatttttc caataccagc
      181 ttcactagtt aaaattccct tttcaattaa acactgcctt ggaaaaacaa atataccgtt
      241 caaatcatca tcaataacaa caatacataa aaaatcagcg ctatcattct catcaaaagg
      301 acaattctta ccaaattcat ctttctccca aaaagcaaca aagtaccctg cctttttatc
      361 cgttttcttc gccaaacgcg tacgagtcat tgtcccatct ttagccgttt ttacaatcat
      421 tcctcgatat tctttgtttt gtagttcttc ccgaattatt tcaagttcac caagttcgct
      481 ttgtaacagc tgttcatact ccattaactc tctcccttca gttgcaaatg aagaattgga
      541 taaggcttcc caaaaccgtc cgcgtcactt ctagaagaaa ccacaaatcc atgcttcaaa
      601 taaaatctcg tggcattttc attttgttca ttcacatcca ccaaatttat ctgcttattt
      661 tctattagcc aactaagaat ttgactccca taaccattac ccgtagctat cggctctaaa
      721 aacaacatat ctagttcccg ctcgctcgtc ccactaaaac caacaacctc ttcaccagcg
      781 aaccataaga acagttccac attatctaga aacaaaggaa tttgttcttt gtaaaactgc
      841 ctatcttccg cagctaaaaa atcatgcgtt gcaataactg acttttccca aatc
//
LOCUS       DASDXX010000363          890 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.367, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000363 DASDXX010000000
VERSION     DASDXX010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.367"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>890
                     /locus_tag="U0280_002978"
     CDS             <1..>890
                     /locus_tag="U0280_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM2272877.1"
                     /translation="SRRSSKKYKRRRKILFWILIPVMCLVLAGVGYGTYLFSKTKLAA
                     DNSYDNVRNGKASTLRTNDIEPIKDSFSILIIGVDTSSTRAENGNPRSDSLILATFNV
                     KDSRIEMTSIPRDSYVHIEDSAKDIDKYTKINAAHAYGGPELTMKTVEEEFKIPIDYY
                     VRFDFDAFLKIVDALDGIDVDVPVDFTEQDSKDNAGAITLKKGPQHLNAEQALALART
                     RHIDSDIERGKRQQLIIKSIVSEATSISSVSKYSDIIEVVGDNMKTNLTFNQMLSIAK
                     YGMTNKIDIKSLNLKGDSNP"
BASE COUNT          316 a          166 c          156 g          252 t
ORIGIN      
        1 agccgaagaa gcagcaagaa atacaaacgt agaagaaaaa ttttattctg gattctaatt
       61 cctgtaatgt gcttagtact tgcaggtgtc ggatacggca cttatctttt tagtaaaaca
      121 aaactcgcag cagataactc ttatgataat gtaaggaacg gaaaagcctc tacacttcga
      181 acaaatgaca ttgaacctat aaaagatagt ttttctattt taattattgg tgttgatacc
      241 agctctacac gggccgaaaa tggtaaccct cgaagcgatt cactaatctt agcaacattt
      301 aatgtcaaag attcacgcat agagatgact agtattccgc gtgattctta tgttcatatt
      361 gaagattccg ccaaagacat tgataaatac acgaaaatta acgcagctca tgcttacggt
      421 ggtccagaac ttacaatgaa aaccgtagaa gaagaattta agattccaat tgattattat
      481 gttcgttttg actttgatgc attcttaaaa attgtggatg ctttagacgg aattgatgta
      541 gatgttccag tggacttcac tgagcaagat tctaaagaca acgccggtgc aatcactcta
      601 aaaaaaggtc ctcaacacct taacgctgag caagctttag cactagctcg tacacgacac
      661 atcgatagtg atatcgaacg tggcaaacgt caacaactaa tcattaaatc tattgtaagc
      721 gaagcaacat ccatttcttc tgtaagcaaa tattccgata tcattgaagt tgttggagat
      781 aacatgaaaa ccaacttaac tttcaatcaa atgctttcta tcgcaaaata tggaatgaca
      841 aataaaattg atattaaatc ccttaactta aaaggggata gcaacccaat
//
LOCUS       DASDXX010000364          875 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.369, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000364 DASDXX010000000
VERSION     DASDXX010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.369"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..382
                     /locus_tag="U0280_002979"
     CDS             <1..382
                     /locus_tag="U0280_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEM2272878.1"
                     /translation="TEFFSGVENQQYNQIEEWILVVIAAFSSVLIALLLWTASMIFKD
                     LAAEFMPFSDLTVNRLRRIAGILLVYSLAPQIMYSVLHTVLIPGYSITFGLNMSFFFA
                     IIFYCLTEIFRYGASLQKESDETL"
     gene            397..624
                     /locus_tag="U0280_002980"
     CDS             397..624
                     /locus_tag="U0280_002980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272879.1"
                     /translation="MAIVLRLDRVMADRKMSLNQLSQEVGVANVNLSKIKTGKVSAIR
                     FSTLNEICRVLNCQPGDILEYVADDSLETEL"
     gene            664..>875
                     /locus_tag="U0280_002981"
     CDS             664..>875
                     /locus_tag="U0280_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2272880.1"
                     /translation="MNKQNELQSVLSNKKKVLIIGPNGAGKSTFAAKLGKCYDFEVCH
                     LDKLFWLENWNAVEKADFEDKVNGILR"
BASE COUNT          280 a          122 c          177 g          296 t
ORIGIN      
        1 aacagaattt ttttctggtg tggaaaatca acaatataat caaattgagg aatggatttt
       61 agtagttata gctgcttttt ctagtgtttt aatagcattg ctactatgga ccgcaagtat
      121 gatttttaaa gatttagctg ctgagtttat gccttttagc gatcttactg ttaacagatt
      181 gcggagaatt gcagggatat tgcttgtcta ttcgctagca ccgcaaatta tgtattctgt
      241 tttacataca gtactcatac cgggttatag cattactttt ggtttgaata tgtcattttt
      301 ctttgcaatt attttttatt gtttaactga aatatttcgt tatggagcat ctttgcaaaa
      361 agaatccgac gaaactttat gattggagcg aaaaaaatgg caattgtatt gaggctagat
      421 cgagtaatgg ccgaccgtaa aatgtcttta aaccagttat cccaagaagt tggtgtagca
      481 aatgtaaact tatccaaaat aaaaactggt aaagtaagcg ccattcgttt ttctactcta
      541 aatgaaatat gtagagtctt aaactgccaa ccaggtgata ttttggagta tgtagcggat
      601 gattctcttg aaaccgaact ttaaatgcgt tagattagcc atacttagat aaggagcgcg
      661 taaatgaata aacaaaatga attgcaatct gtattatcta acaagaaaaa agtattaata
      721 attggtccta acggcgctgg taagtcaact tttgctgcaa aacttggaaa atgttatgat
      781 tttgaagtct gtcatttaga taagcttttt tggctggaga attggaatgc agttgaaaaa
      841 gcggatttcg aggataaagt gaacggaatt ctgcg
//
LOCUS       DASDXX010000365          857 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.370, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000365 DASDXX010000000
VERSION     DASDXX010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.370"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..518
                     /gene="trpA"
                     /locus_tag="U0280_002982"
     CDS             <1..518
                     /gene="trpA"
                     /locus_tag="U0280_002982"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEM2272881.1"
                     /translation="KVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEH
                     QTLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHI
                     DNHLAYLKSISPVPVLAGFGVSSIEHVEKFAHVCDGVIIGSKVVQMLHEEKTAELGAF
                     LQKAAEVRIEN"
     gene            589..>857
                     /locus_tag="U0280_002983"
     CDS             589..>857
                     /locus_tag="U0280_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272882.1"
                     /translation="MSVEVKPEHARMLNNTKNVTLGIAIVSTIQAVLSAVSIVGLFAL
                     QQRKEVLANAHATAVVQNTIMTTTIMAVICIAFTIMLFLSFNKLR"
BASE COUNT          271 a          140 c          180 g          266 t
ORIGIN      
        1 gtaaagtgca aattccgcta attattatga gttatattaa tccgattttt catttaggta
       61 tcccgaaatt tgttgaattg gtgcagaaaa cgccggtgaa agggcttatt attcctgatt
      121 taccttatga gcaccaaaca ctgattacgc cagaacttca agggacagat atcgcactta
      181 ttccgcttgt ttcattgaca agtccgaaag agcgcctcga agaaattgcg aaacaggcag
      241 aagggtttat ttatgcagta acagttaacg gaactaccgg tgtgaggagt gaatttgatg
      301 cccatattga taaccattta gcttatttaa aaagcattag ccctgttcca gttctcgcag
      361 gttttggtgt ttcttctatt gaacatgtgg aaaaatttgc gcatgtatgt gatggtgtaa
      421 taatcggtag taaagtcgtg caaatgttac atgaagaaaa aacggcagag ctaggagcgt
      481 ttttacaaaa ggccgcagaa gttcgaatcg aaaactaatt actacttaca atttctcttt
      541 aaatatggta aagtctggtg tatagaatgt taaagaggag ttgtaaggat gtctgttgaa
      601 gttaaaccag agcatgcgag aatgctcaat aacacgaaaa atgtcacact tggaatagcg
      661 attgtatcga ctattcaagc agtattaagt gcagtctcta ttgtaggtct ttttgcgtta
      721 caacaaagaa aagaagtact tgctaatgca catgccactg cggtcgttca aaatacgatt
      781 atgacgacta ccattatggc agttatttgt attgcgttta cgattatgtt atttctttct
      841 tttaacaaac ttagaaa
//
LOCUS       DASDXX010000366          847 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.371, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000366 DASDXX010000000
VERSION     DASDXX010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.371"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..258
                     /locus_tag="U0280_002984"
     CDS             <1..258
                     /locus_tag="U0280_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272883.1"
                     /translation="VYQGFIWNQDSKRSAGKTATGAIVGGVLTGGIGAIAGGAIGAKK
                     KDISYAVISLLRVSDASPVQLIIKCNKKKASKLGSFTIGRV"
     gene            348..>847
                     /locus_tag="U0280_002985"
     CDS             348..>847
                     /locus_tag="U0280_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000215781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM2272884.1"
                     /translation="MTVGIYIRVSTEEQVKEGFSISAQKEKLKAYCTAQGWEDFKFYV
                     DEGKSAKDMHRPLLQEMITHIKKGLIDTVLVYKLDRLTRSVVDLHNLLSIFDEYNCAF
                     KSATEVYDTSSAMGRFFITIISSVAQFERENTSERVSFGMAEKVRQGEYIPLAPFGYV
                     KGPDGKL"
BASE COUNT          278 a          129 c          185 g          255 t
ORIGIN      
        1 gtctatcaag gatttatatg gaatcaagat tcaaaacgaa gtgcaggtaa gactgcaaca
       61 ggagcaattg taggtggtgt tcttactggt ggaatcggtg caatagctgg aggagcaatt
      121 ggggctaaga aaaaagatat ctcatatgcg gtaatctctt tacttcgtgt ttctgatgcg
      181 tcacctgttc aattaattat taagtgcaat aagaagaaag catctaaact tggaagtttt
      241 actatcggaa gagtttaaat agcttgatta taaagttttg ccctactcgg gcttttcttt
      301 aaaaccaaaa acagaacata cgtactattt cggaggtgag caagttcatg actgtaggga
      361 tttatataag ggtttccact gaagaacaag tgaaagaagg cttttctata tcagcacaga
      421 aagagaagtt aaaagcatat tgcacagctc aaggatggga agatttcaag ttttacgtcg
      481 atgaaggtaa atcagcaaaa gatatgcacc gccctcttct acaagaaatg attacacata
      541 taaaaaaggg acttattgac acagttcttg tatataaatt ggatcgtctt actcggtctg
      601 ttgtagattt gcataattta ttaagtatat ttgatgaata taactgtgca tttaaaagcg
      661 ctactgaagt ctacgatact tcttccgcta tgggcagatt tttcattaca ataataagtt
      721 cagttgctca atttgaaaga gagaatacat ctgagcgtgt tagttttggg atggctgaga
      781 aagtgcggca aggagaatat ataccccttg ctccattcgg ttatgttaaa gggcctgatg
      841 gaaaact
//
LOCUS       DASDXX010000367          844 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.373, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000367 DASDXX010000000
VERSION     DASDXX010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.373"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..837
                     /locus_tag="U0280_002986"
     CDS             <1..837
                     /locus_tag="U0280_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM2272885.1"
                     /translation="FDTVEDLLIKNDTKTLHFEADYVTVSEFKQMERVFNRQLIPLTG
                     FFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRAGAT
                     SSSFDTIVASGVRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAVGEPAE
                     KLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFGYGDAFGHSLGHGIGLEI
                     HEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLLITETGNEILIHSPKELI
                     IL"
BASE COUNT          275 a          135 c          170 g          264 t
ORIGIN      
        1 tttgatacag tagaagattt attaattaaa aatgatacaa aaacactaca ttttgaagcg
       61 gattatgtga ccgtatctga atttaaacaa atggagcgcg tatttaatcg tcaattaatc
      121 ccacttactg gcttctttga agaaatgcgt aaagtgaaaa cagcaagtga actaaaagca
      181 atccgcacag cttgtgatat tgctgatgca gcttttgcac atatcattca atttatcaaa
      241 ccaggcatgg ctgaaatcga agtatctaat gaactagaat tctttatgag acgtgcggga
      301 gctacttcct cgtcgtttga tacaattgtc gcatctggtg ttcgttctgc gttaccgcat
      361 ggtgttgctt ctgataaaaa aatcgaagtt ggcgatttcg ttacaatgga ttacggctgt
      421 tattatgacg gttattgttc agatatgaca agaactatcg cggtcggtga acctgctgaa
      481 aaattaaaag aaatttacca aattacgtta gatgcgcaat taaaggtaat tgatagctta
      541 aaaccaggta tgactggaat tgaagcagat gctattgcac gtgattatat ttcttctttt
      601 ggctatggcg atgcatttgg acattcttta ggacatggta ttggactaga aattcacgaa
      661 ggacctaatt tatcctttaa gagccctcaa aaactagaag tcggacatgt tgtgacggat
      721 gaaccaggaa tttatttacc aggaatcggt ggcgttagaa ttgaagatga tctcttaatt
      781 acagaaacag gtaatgagat tttaattcat tcaccaaaag aattaattat tttataaaat
      841 tcct
//
LOCUS       DASDXX010000368          836 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.374, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000368 DASDXX010000000
VERSION     DASDXX010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.374"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            246..677
                     /locus_tag="U0280_002987"
     CDS             246..677
                     /locus_tag="U0280_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lmo1656 family SNX6-recruiting virulence factor"
                     /protein_id="HEM2272886.1"
                     /translation="MNRKMRLLKGLMAFIVGVSIIATPIITVYAASNKVAISMNRRAV
                     NGATNGKYHSLNKGTVKLKVSAKGFGNSNPNSWVTLHKEKFGIDDYFGRVSISSGKNY
                     FYKNKTKEFPTKANAKSSKYYLKAEKAMDWYTVKIEGTISN"
     gene            695..>836
                     /locus_tag="U0280_002988"
     CDS             695..>836
                     /locus_tag="U0280_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM2272887.1"
                     /translation="MLRFSGLVMTIALIVYIVFFLLRWLKRREKLEMIIFKTCLYVYA
                     CGV"
BASE COUNT          314 a          105 c          154 g          263 t
ORIGIN      
        1 tgatatgtat ttttgtgata aatagaaaca ggaatgttta aaatgtgaat agtaactgat
       61 aatgagtatt atcttataac caaaaaactt aatgatactc acgttgtgta aaaatatctc
      121 taataagctc cattttctag tcgttcacga caagaatcgg acatttcatt acatttttgg
      181 ttatacatcg cttttttatg atactcttgc attgcaacta ttgattacaa aaaggaggca
      241 acaagatgaa cagaaagatg agattattaa aaggactaat ggctttcatt gtaggtgtaa
      301 gcattatagc aaccccaatt attacagtct atgcagcaag taataaagta gccatttcga
      361 tgaaccgtcg agctgtaaat ggtgctacaa atggaaaata tcattcattg aacaaaggaa
      421 cggttaaatt gaaagtttcg gctaaaggtt tcgggaatag taaccccaac tcgtgggtaa
      481 ctttgcacaa agagaaattt ggaatagatg attattttgg cagagtcagt atttcttcag
      541 gaaagaatta tttttataaa aataagacaa aagaatttcc aacaaaagca aatgcgaaat
      601 caagtaaata ctatttaaaa gctgaaaaag cgatggattg gtacacagtg aaaatcgaag
      661 gaaccattag taactaagaa ttaggagagt taacatgctt agattttctg gattagtaat
      721 gacaatcgct ttaattgtat atattgtctt tttcttatta agatggttga aaagacgaga
      781 aaaattagag atgattatct ttaaaacatg tttatatgta tatgcttgtg gtgtaa
//
LOCUS       DASDXX010000369          824 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.375, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000369 DASDXX010000000
VERSION     DASDXX010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.375"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>824
                     /locus_tag="U0280_002989"
     CDS             <1..>824
                     /locus_tag="U0280_002989"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEM2272888.1"
                     /translation="YIKTDKRYISYWKDGEWDEGTLTEDNTLHISEGSTALHYGQQCF
                     EGLKAYRCKDGSINLFRPDRNAARIQKSCERLLMPHIPTEKFIDAVMQVVRANEEFVP
                     PYGTGATLYLRPFVIGVGDNIGVHAAPEYIFSVFCSPVGPYFKGGMAPTNFIVSDFDR
                     AAPNGTGAAKVGGNYAASLLPGQAAKERNFGDCIYLDPATHTKIEEVGSANFFGITKD
                     DKFVTPYSPSILPSITKYSLLYLAEHRLGLEALEGDVYIDKLDEFKEAGACGTAAV"
BASE COUNT          237 a          142 c          183 g          262 t
ORIGIN      
        1 ttatattaaa acggataagc gttacatttc ttattggaaa gacggggaat gggatgaagg
       61 tacgctaaca gaagataata cgctacatat tagtgagggt tcaacagcgc ttcattacgg
      121 acaacaatgt tttgaaggtt taaaagcata tcgttgtaag gacggttcaa ttaatctttt
      181 ccgcccagat cggaatgctg ctcgtattca aaaaagctgt gagcgtttat taatgcctca
      241 catcccaact gaaaaattta ttgatgctgt tatgcaagtt gttcgtgcca atgaagaatt
      301 tgtaccgccg tatggaacag gtgcaacact ttatttacgt ccatttgtta ttggtgtagg
      361 tgacaatatt ggtgttcatg cagccccaga gtatattttc tctgttttct gttcaccagt
      421 cggcccttac ttcaaaggtg gaatggcgcc aactaacttt attgtttccg attttgaccg
      481 tgctgctcca aatggtacgg gtgccgcaaa agtaggcgga aactatgctg caagtttact
      541 tccaggccag gctgcaaaag aacgcaattt tggtgattgt atttatttag atccagctac
      601 tcatacaaaa atagaagaag ttggttctgc taatttcttt ggtattacaa aagatgataa
      661 atttgttacg ccgtattctc cttctatttt gccaagtatc acgaagtatt cgttacttta
      721 tttggcagag catcgtctag gtttagaagc attagaaggt gatgtatata ttgataaatt
      781 agatgagttt aaagaagctg gagcatgtgg aacggcagcg gtta
//
LOCUS       DASDXX010000370          812 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.377, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000370 DASDXX010000000
VERSION     DASDXX010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.377"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            330..605
                     /locus_tag="U0280_002990"
     CDS             330..605
                     /locus_tag="U0280_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272889.1"
                     /translation="MKKQVRLKILKLDAKKSVGILTQQAREEIAMIQKGNEKIGDELK
                     FIQDKLADAFESRTAKAVQSWMKHIREEELEEQKEVLVICKESIRMD"
BASE COUNT          331 a           89 c          151 g          241 t
ORIGIN      
        1 gtttattgtt tttataatcc gaatgagttt gaaaaatatt atgaaatgaa tcatcagaca
       61 cgtagactat tgaaaaattt tcaaatagag cttgttgatg cagcgcagtc ttttcgagaa
      121 acaaatacaa gtttaggaga atggatttct aataacaatt aaaaggaagt gagattatat
      181 gtatagcaat acttatcaac gcgaatacgc acgtgcaatt ggggatacat cttatgattt
      241 gagctatcac ttcaaattat tgagcgagaa ctcaagaaaa aaatttaact gccaaagaac
      301 gttcgaattt acttgtagca gaaagtactt tgaaaaaaca agttcgattg aaaatcttaa
      361 agctagatgc aaaaaaatca gtaggaatac taactcagca agctagagaa gaaatagcta
      421 tgattcaaaa aggaaatgaa aaaattggag atgaattaaa atttattcaa gataaattag
      481 cggatgcatt tgaatccaga actgcaaaag ctgttcaaag ttggatgaag catatccggg
      541 aagaagaatt ggaagagcaa aaagaggttc ttgttatttg taaagaaagt atcagaatgg
      601 attaatatag cggtgaaggt tatatttgaa ggatatatca cgtaaaataa aaatattgaa
      661 gatattgata gaaatttctt agtttttgtg tgagaaatcg aaaaagatgc atttattaat
      721 aatatgctat taaggatttt gaaaactagc ataataaaaa tttaaaaaga tctagtcata
      781 taacccacct atacgaatgt gtattgtttt tt
//
LOCUS       DASDXX010000371          810 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.378, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000371 DASDXX010000000
VERSION     DASDXX010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.378"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            3..>810
                     /locus_tag="U0280_002991"
     CDS             3..>810
                     /locus_tag="U0280_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2272890.1"
                     /translation="MEGSFTRASEKLFISQPTLSRRIKELETELGVELFIRNRHSLEL
                     SSAGQQFLIEVNDILNRVNKLSHMFDNQKTADEAGQLLKIGYLSNFNMNAMYELLESF
                     KQSHPHVQFSLKPDTPMNLAEGLSNGQYDLVFNLSAYFQPNMSIEEVLFIKNHLQIAI
                     PADHRFRKKKKVYFNDLKQEIVILLERKQSPIIVDYVVSQCTKHGFNLKANSYVKDLD
                     EGLAMTSVGEGLAFLYSGMNDGTLEDKYNIKIMDIQEERNDQNIVAAINKQ"
BASE COUNT          298 a          121 c          145 g          246 t
ORIGIN      
        1 ctatggaagg aagttttacc cgagcatctg aaaaattatt tatttcacag cctaccctta
       61 gtagacgaat aaaagaatta gaaacagaat taggtgtaga actgtttatt aggaatcgtc
      121 attcgctgga gttatcaagt gcaggtcaac aatttttaat agaagtaaat gatattttaa
      181 atcgagtcaa caagctatcc catatgtttg ataatcaaaa aacagcagat gaagctggac
      241 aattattaaa gattggttat ctctcgaatt tcaatatgaa cgcaatgtat gagctgctcg
      301 aatcattcaa gcaaagtcat ccacatgttc aattctcatt aaaaccggat acaccaatga
      361 atttagctga aggtctttct aatgggcaat atgatttagt ttttaattta tccgcttatt
      421 tccagccgaa catgtctata gaagaagtat tatttataaa aaatcatttg caaattgcta
      481 tacccgcgga ccatcgattc cggaaaaaga aaaaagtata ttttaatgat ttgaagcaag
      541 aaatagttat tttgctcgaa agaaaacagt ctcccatcat tgtagactat gttgttagtc
      601 aatgtactaa acatggtttt aatttaaaag cgaattcgta tgtaaaagat ctggatgaag
      661 gactagcaat gacatctgtt ggagaaggat tagccttttt gtattccggc atgaatgatg
      721 gaacattaga agataagtac aatattaaaa ttatggatat tcaagaagaa cggaatgacc
      781 aaaatattgt cgcagccatt aataaacaga
//
LOCUS       DASDXX010000372          793 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.380, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000372 DASDXX010000000
VERSION     DASDXX010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.380"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>793
                     /locus_tag="U0280_002992"
     CDS             <1..>793
                     /locus_tag="U0280_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEM2272891.1"
                     /translation="VPLFGYIWYFYTDTLVLPFTALIALFYYLYTKSSKWWYFIIIGL
                     LFAVGYQIKPNIIILLPAMLIHLCFIRNWRKILLNTVIVAICFFGLSTVFTPIAESYD
                     FKKDPTIEFPQTHWIMMGLGDPAGRYNSNDVAYTSQFKTKEEKEEANIEKIKERIEEH
                     GPLGLIKLFDNKVLNTWTDGTRAYTWYVNAALDYPAPYDYFFGDKRVVTELPAQLFHI
                     INLFLICLGALRFYKKREFDMSFFVNISLVGVWLFHLFWEANQRYI"
BASE COUNT          237 a          126 c          148 g          282 t
ORIGIN      
        1 gtgccattat ttggttatat ttggtatttc tatacagata cacttgtact gccatttaca
       61 gcgctgattg ccttatttta ttatctatac acgaaaagta gtaaatggtg gtatttcatc
      121 attattgggc tgctgtttgc agtaggttat caaattaagc cgaatatcat cattttactt
      181 ccagcaatgc ttattcattt atgttttata agaaattggc gtaaaattct attgaacacg
      241 gtcatcgtag caatttgctt tttcggttta agcactgttt ttacaccaat cgcagagagt
      301 tatgacttta agaaagaccc aaccattgaa tttcctcaaa cacattggat tatgatgggg
      361 cttggcgatc cagccggtcg ttataacagc aatgatgttg cttatacttc acaatttaaa
      421 acaaaagaag aaaaagaaga agccaatatt gaaaaaatta aagaacgtat tgaagaacat
      481 ggaccgcttg gcttaataaa gctttttgat aataaggtgt taaatacttg gacagacgga
      541 acgcgagcat atacgtggta tgttaatgct gcacttgatt atccagctcc ttatgattac
      601 ttctttggag ataaacgggt tgtcactgaa ttacctgctc agctgttcca tattattaat
      661 ttgtttttaa tttgtctagg tgctttacgt ttttataaga aaagggaatt tgatatgtcc
      721 tttttcgtta atatttcgct agtaggtgtt tggctattcc acttattctg ggaagcaaat
      781 cagcgttata tta
//
LOCUS       DASDXX010000373          790 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.381, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000373 DASDXX010000000
VERSION     DASDXX010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.381"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(94..>790)
                     /gene="virB"
                     /locus_tag="U0280_002993"
     CDS             complement(94..>790)
                     /gene="virB"
                     /locus_tag="U0280_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein VirB"
                     /protein_id="HEM2272892.1"
                     /translation="GSISLEIQKGSFVGIMGPSGAGKSTLLNVLSSIDKPTSGEIEIG
                     GKQISTMNGKELAVFRRDQLGFIFQDYNLLDTMTVKDNIVLPLALARIKQAEIDQRFE
                     IIARQFGIFELRNKYPTEISGGQKQRTAVCRAMITEPTLIFADEPTGALDSKAATNLL
                     EGLSQAKDVRDSTIMMVTHDAFAASYCERIMFIKDGEIFTEIYRGTSSRKQFFQKVLD
                     VLALLGGGENDVI"
BASE COUNT          260 a          173 c          120 g          237 t
ORIGIN      
        1 acaaacgtaa aaaaaactaa tacacaaaca attaacgaaa caaaataaac aatatattga
       61 ttaaagttct ttcgcatatt ggtcagcgcg actttaaata acatcgtttt cgccacctcc
      121 aagaagcgcc aaaacatcta ataccttctg gaagaattgt tttctagaac ttgtccctcg
      181 gtagatttca gtgaaaattt cgccatcttt aataaacata attctttcgc agtaactggc
      241 tgcaaaagca tcgtgcgtca ccatcataat agtggaatca cgcacatctt ttgcttgaga
      301 aagtccttct aataaattgg tcgctgcttt ggaatcaagc gcaccagtgg gttcatccgc
      361 aaaaatcagc gttggttctg taatcattgc tcgacaaacc gctgttcgct gcttttgtcc
      421 accagatatt tcggttgggt acttgttcct taactcaaaa atcccaaatt gacgagcaat
      481 aatttcaaac cgctgatcaa tttccgcttg tttaatacga gcaagagcca gcggtagaac
      541 aatattatcc ttcacagtca tcgtatctaa taaattatag tcttgaaata taaaaccaag
      601 ctgatctctt ctaaaaacag ctaattcttt tccgttcata gtagaaattt gctttccacc
      661 aatctcaatt tctccagagg ttggtttatc tatagaagac aatacattta ataaagtaga
      721 tttaccagca ccagagggac ccataatgcc tacaaaggaa cctttttgta tctctaaact
      781 aatacttcca
//
LOCUS       DASDXX010000374          789 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.382, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000374 DASDXX010000000
VERSION     DASDXX010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.382"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>789
                     /locus_tag="U0280_002994"
     CDS             <1..>789
                     /locus_tag="U0280_002994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272893.1"
                     /translation="QILETLLLSSFPNLQVLANEVHVSYSGIKKEIKELNEELRERNL
                     YISTGSQVEITGDEFSLRIFYTFLFLVAYSGDRWPFSFVKYDEITDILESCPKEIYRA
                     NSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQ
                     LPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQV
                     NDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGY"
BASE COUNT          269 a          120 c          147 g          253 t
ORIGIN      
        1 ttcaaattct cgaaacttta ttgctgtctt ccttccctaa cttacaagta ttggcaaacg
       61 aagtacatgt ttcttattct gggataaaga aagaaataaa ggaattgaat gaagagctaa
      121 gggaacggaa cttgtatatt tctacaggaa gtcaggtaga aataacaggg gatgaatttt
      181 cattaagaat attctatacc ttcctctttt tagtcgcata tagtggggat cgttggccct
      241 tttcttttgt taaatatgat gaaatcaccg acatattaga gagttgtcca aaagaaattt
      301 atagagcaaa ctcgatagat aaggcgatga tgattcatta ttatgtcgct atgcatttat
      361 taagagatcg aatgaattgt caaattgata caactaggca gtttaaagtg gccctatata
      421 aggcttgcac cgaggagtct aagaaatcag aaagtgcgtt cattaaaaaa gtagcgaaac
      481 aacttcctaa taggaactat aaagaaatga cctacacgac gcaaattata ctgagtacca
      541 ttgttgcttt cggtagttat tcttccattg aaaaaatgcc ttcttttttc tacatggatg
      601 aacagttaga agaaatgggc ttcatgaaac tagttgattt tgccagtgaa caagtaaatg
      661 ataatctctc tattccattt tcagagaaag agatggaatt gctccgttac tcctttgcga
      721 gtataaatta tagatatttc ttacttgata atttaatcaa taagttcaat aatattgtgc
      781 cagggtata
//
LOCUS       DASDXX010000375          776 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.383, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000375 DASDXX010000000
VERSION     DASDXX010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.383"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            200..763
                     /gene="raiA"
                     /locus_tag="U0280_002995"
     CDS             200..763
                     /gene="raiA"
                     /locus_tag="U0280_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEM2272894.1"
                     /translation="MLKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNL
                     KVYSDKNAKVEVTIPLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD
                     KGAERDYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFY
                     VYTDAETNGTNIVYSRKDGKYGLIETN"
BASE COUNT          290 a          108 c          150 g          228 t
ORIGIN      
        1 gatagatgat atttatcttc taaaagaggt ttgcggaagc ggtattagtg gaataaaata
       61 ctaaataaag ataagtgaat gtaagcttct tagctctttg tgcaaatgtt tgcaaaacac
      121 atcgttttca cgtagactaa gggtaagaag aatactcttc tttatcgtta ttttgtttta
      181 tttcaaagga ggaattgcta tgcttaagta caacattcgt ggagaaaata ttgaagtaac
      241 agaaccgatc cgagattatg ttgaaaagaa aatcgataaa ttagaacgat attttacgga
      301 gactccagac gctaacgttc atgttaattt aaaagtatat tccgataaaa atgcgaaagt
      361 tgaagtgacc attccgctcc caaatcttgt gctacgtgca gaagaaacaa gtggagattt
      421 atatgctagc atcgacttaa ttgtagataa attagaaaga caaattcgca aacataaaac
      481 aaaagtaaac cgcaagttcc gtgacaaagg ggcagaaaga gattattttg cttattctga
      541 tgttaacggc agcaccccac cagaagaaaa tgaaggagat tttgatcttg aaattgtaag
      601 aacaaaacaa ttttcattaa aaccgatgga tagtgaagaa gctgttttac aaatgaattt
      661 gctgggtcat agtttctatg tttacactga tgcggaaaca aacggtacca atattgttta
      721 ttctcgtaaa gacggcaaat atggtttgat tgaaacaaat taatttaaaa taataa
//
LOCUS       DASDXX010000376          773 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.384, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000376 DASDXX010000000
VERSION     DASDXX010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.384"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>773
                     /locus_tag="U0280_002996"
     CDS             <1..>773
                     /locus_tag="U0280_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEM2272895.1"
                     /translation="VEFYNMIDTNIPTDNEDYRHGTAVSSLIVDGASINPSLDDGCGR
                     FKVRHFGVATRKAFNSFTIIRAIKEIVAKNKDIHVWNLSLGSNEEVNRNFISAEGAIL
                     DQIQFENDIIFVIAGTNKKSSETDKRIGAPADSINSMIVNSVGLNKEPANYSRQGIVL
                     SFFTKPDVSYYGGTAEDYMVVCEPLGKAYVTGTSYAAPWIARKLSYLIDIIGLSKEVA
                     KALLIDSAIGWKDNSKFDSLAIKGHGVVPIRIEDIINSP"
BASE COUNT          274 a          109 c          158 g          232 t
ORIGIN      
        1 gggtagaatt ttataatatg attgatacta atataccaac tgataatgaa gattacagac
       61 atggtacagc tgttagttcc ttaattgtag atggagcaag tattaatccc tcgcttgatg
      121 atggctgcgg tagatttaaa gtacggcatt ttggagtagc tacaagaaaa gcctttaatt
      181 cttttaccat tatccgcgca attaaggaaa tagtagcaaa aaataaagat atccacgttt
      241 ggaacctgtc attgggatct aatgaagagg ttaacagaaa ctttatatct gctgaaggag
      301 caattcttga tcagattcaa tttgaaaatg atattatttt tgtaattgct ggaaccaata
      361 aaaaaagtag cgaaactgat aaacggatag gtgcaccagc tgattcaata aattcaatga
      421 tagtaaattc tgtaggacta aataaagaac ctgcaaatta ttctcgacaa ggaattgtgt
      481 tatcattttt tacaaaacca gatgttagct actatggagg aactgctgag gattatatgg
      541 tagtatgcga gccactagga aaagcatatg taacagggac atcatatgca gcgccttgga
      601 tagctagaaa gttatcttat ttgattgata ttatcggtct aagtaaagag gtagccaaag
      661 ctctattgat tgattcagct attggctgga aagacaactc caaatttgat agtttggcaa
      721 taaaaggaca tggagttgtg cctataagaa ttgaagatat tataaattca cca
//
LOCUS       DASDXX010000377          770 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.385, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000377 DASDXX010000000
VERSION     DASDXX010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.385"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(19..>770)
                     /locus_tag="U0280_002997"
     CDS             complement(19..>770)
                     /locus_tag="U0280_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2272896.1"
                     /translation="DVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDE
                     IRKELDINSYICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMR
                     ANLPDHDRVTIGMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFL
                     RWHDVSVDVCPADGSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGN
                     GRDEVKAVADYVTDHVDEDGVYKALEHLKLI"
BASE COUNT          228 a          183 c          116 g          243 t
ORIGIN      
        1 acaggctttt ttgatatttt aaattaattt taaatgttct aaagctttat aaaccccatc
       61 ttcatccaca tgatccgtaa catagtcagc gaccgctttt acctcatcac ggccgttgcc
      121 cattgccacg ccagttccaa cagcttgaag cattgcaata tcgttcaaac catcgccaaa
      181 tgcgtaagta tcttccatcg agaagccaag ttttttgatc atttgtttaa tgccttccgc
      241 cttcgaaccg tcagctggac aaacatccac ggaaacatca tgccagcgca agaaaccata
      301 ctgcttaaat tcttctcggt aataagcatc atacgactca tcacagaaaa gtaaacactg
      361 ataaatgtca cgacctttat aataattagc atccacttta ggataatctc ttttaataga
      421 atccattccg attgtcaccc ggtcgtgatc cggtaaattc gcgcgcatgg aatcttttcc
      481 tgaaaaaaca attggatgct catgctccga tgcaaccgtg attaatcgtt ctaaagattc
      541 tgttggtaat ggtttagcgt atatttcttt tccttcaaaa ataacatatt gaccgttgta
      601 gcaaatataa gaattaatat ctaattcttt tctgatttca tcaagcataa atggaccacg
      661 accagttgca atagccacat aaacgccatt ttctttcaat ttagcaatcg cttgcttcgc
      721 tgatgctgga atttctttcg tttctcctac aagtgtccca tctacatcaa
//
LOCUS       DASDXX010000378          770 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.386, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000378 DASDXX010000000
VERSION     DASDXX010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.386"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>770
                     /locus_tag="U0280_002998"
     CDS             <1..>770
                     /locus_tag="U0280_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEM2272897.1"
                     /translation="DTLCAEHDLSVIPPNQNKGKSHYEWQMDQQGNSWKAQLRTSIDM
                     CIKNSKTFDDFASQMQTQGYEIKYGKHIAFRAEKQKRFTRAMQLGGNYTEENIKLRIA
                     QKDKLPIKKAKKINLKNEPLSVMVALENNKKVIESKGYEHWAKLHNLKQSAKTVNLLK
                     ELGISSIEEWEQKKISNQEIMNANMAEIKVIEKELANKKFILKQLITYEDTKGIYHSA
                     DKQLLNTKEPQSAIQLYKTAVKALKQVNIKPSKQIKDE"
BASE COUNT          326 a          113 c          146 g          185 t
ORIGIN      
        1 gtgatacatt atgtgcagaa catgatcttt ctgtaattcc gccaaaccaa aataaaggaa
       61 aaagtcacta tgaatggcaa atggatcagc aaggaaacag ctggaaagca caattgagaa
      121 cctctattga tatgtgtata aaaaatagta agacatttga tgatttcgca agccaaatgc
      181 aaacacaagg atatgagatt aaatatggta agcatattgc ttttcgtgct gaaaaacaaa
      241 aacgattcac acgagcgatg caactaggcg gaaactacac agaagaaaat atcaaattac
      301 gtatcgctca aaaagataag ctgccaatca aaaaagctaa gaaaataaac ctgaaaaacg
      361 agccacttag tgttatggtt gcattggaaa ataataagaa agtcatcgaa agtaaaggct
      421 atgagcattg ggcgaaattg cataacctta aacaaagtgc aaagactgtt aatttactga
      481 aagagcttgg tatttcttct attgaggagt gggagcagaa aaaaataagt aatcaagaaa
      541 taatgaatgc taatatggca gaaataaaag ttattgaaaa agaattagct aataagaaat
      601 ttattttgaa gcaactcatt acctatgaag atacaaaagg aatatatcat tctgcagata
      661 agcagctact gaataccaag gaaccacagt ctgctattca attgtacaaa actgctgtta
      721 aggcgcttaa acaagttaat attaaaccga gtaagcagat aaaagatgag
//
LOCUS       DASDXX010000379          763 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.387, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000379 DASDXX010000000
VERSION     DASDXX010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.387"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..308
                     /locus_tag="U0280_002999"
     CDS             <1..308
                     /locus_tag="U0280_002999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272898.1"
                     /translation="KRIGRHLYYRALLNGKEHKDKLYYAMKYLGELIGKTDENGNVSL
                     PPEVTLKVLIEYSTLSKAAFYRQRIHLLEQEILKPHENTFIVQKKVASHYEDQLTSI"
     gene            326..>763
                     /locus_tag="U0280_003000"
     CDS             326..>763
                     /locus_tag="U0280_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2272899.1"
                     /translation="MKFNWKVVLLFVLILALIVPVYSKAVETGKELPKSPELQDDKSS
                     TLKNVNTPKNLKASPLTIPANSTIADLFPDEGMAKTVANQLGRTENNNFQTPTKTDWK
                     VDDVVTEVELNRMWYLTSVATIGSIEGIQYLPNLYNVQLQFDDQ"
BASE COUNT          289 a          119 c          145 g          210 t
ORIGIN      
        1 taaagagaat cgggcggcat ttatattatc gagcattact taacggcaaa gagcataaag
       61 ataaactata ttatgccatg aaatatttgg gagaactcat tggtaaaacg gatgaaaacg
      121 gaaatgtttc gttgccacca gaagtgacat tgaaagtctt aattgaatac agtactttat
      181 ccaaagcagc tttttataga caacgaattc acttattgga gcaagaaatt ttaaaaccgc
      241 atgaaaatac ttttattgtt caaaaaaaag tagcaagtca ttatgaagac cagctaacta
      301 gcatttaaaa ggagacataa aaataatgaa atttaattgg aaagtagttc tgctgtttgt
      361 tttaatttta gcacttattg ttccggttta ttcgaaggct gtagaaacag gaaaagagtt
      421 acctaagagt ccggaactac aagatgataa gtcatctacg ttaaaaaatg taaatacacc
      481 taaaaatctg aaagctagcc cgctaacaat tccagcgaat agcacgatag cagatttgtt
      541 tcccgatgaa gggatggcaa aaactgtcgc aaaccagcta ggacgaacag aaaataacaa
      601 ttttcaaaca cctactaaaa cggattggaa agtggatgat gttgttactg aggtagagtt
      661 aaatagaatg tggtacttaa cttcagttgc tactatagga agtatcgaag gcattcaata
      721 tctacccaat ctttacaatg tacagttaca gtttgatgac caa
//
LOCUS       DASDXX010000380          763 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.388, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000380 DASDXX010000000
VERSION     DASDXX010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.388"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            40..363
                     /locus_tag="U0280_003001"
     CDS             40..363
                     /locus_tag="U0280_003001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003747248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272900.1"
                     /translation="MTTFERVKVLAEKQKISLKELALKLNMGENAIYSWKVKTPGADK
                     LKAVADYFNVSTDYLLGRTDNPQIGKDITEEVVTLAAHIDPSATEEDMKKILEYIDFI
                     QQKYK"
     gene            380..>763
                     /locus_tag="U0280_003002"
     CDS             380..>763
                     /locus_tag="U0280_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM2272901.1"
                     /translation="MWLDIYREQYPELTIIEDRNMEYAHKGLYINQHILVNPNQNDTE
                     MRCTLAEEIGHYKLTVGNITKQKTINDIKQEKLARNWGYKSLVPLRKIIDAYYEGFTE
                     YYEVSEFLEVTEDFLKHSIEYYRSKF"
BASE COUNT          288 a          119 c          150 g          206 t
ORIGIN      
        1 tttcgtactt tcatatgttt ctttggaggg aatattgaca tgactacgtt tgaaagggta
       61 aaggtattag cagaaaaaca aaaaatatct ctcaaagaac tggcgttaaa attgaatatg
      121 ggagaaaatg ctatttactc atggaaagta aaaacacctg gcgctgacaa attaaaagca
      181 gtagcagact acttcaacgt ctctaccgat tatcttttag ggcgtactga caacccgcaa
      241 attggcaaag acatcacaga agaagttgta acactagccg cgcatattga tccatccgca
      301 acagaagaag acatgaaaaa aattcttgag tatattgatt tcattcaaca aaaatataaa
      361 taagaaatga gatgaacgta tgtggctaga tatatacaga gagcaatatc cagagctaac
      421 tatcatagaa gacagaaaca tggaatatgc tcataaggga ctgtatatca atcagcatat
      481 tcttgtaaac ccaaatcaga acgataccga gatgcgttgc acattggcag aggagattgg
      541 gcattacaaa ttgactgttg gtaacatcac taagcagaaa acgattaatg acataaagca
      601 agaaaagctt gcgagaaact ggggttataa atcattagtc cccttgcgta aaattattga
      661 tgcttattat gaaggtttta ctgagtacta cgaggtttca gagtttttag aagtaactga
      721 agatttttta aagcattcaa ttgaatatta tagaagcaag ttt
//
LOCUS       DASDXX010000381          759 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.389, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000381 DASDXX010000000
VERSION     DASDXX010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.389"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..749)
                     /gene="mdrL"
                     /locus_tag="U0280_003003"
     CDS             complement(<1..749)
                     /gene="mdrL"
                     /locus_tag="U0280_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdrL"
                     /protein_id="HEM2272902.1"
                     /translation="MNTGKWITAAASLLAFMGIGVVDPLLPSIAESIGASHSQVEMLF
                     TAYIFTMAIMMIPIGIVAGKLGDKKLIVIGLFIVTIFALLCGLSDTIGALSIFRAGWG
                     FGNSMFMATAMTMLIALSETPGHAIGIYEASMGLGMAFGPLLGGILGNISWRYPFFAT
                     ACLIFIAFLLILFKVKEPKKVAPAPTEKNEVAIKQMLHLFKYRPFLQIAFSGMFYYYC
                     FFTILAYSPLILGLSAIQIGFVFFAWGLCLA"
BASE COUNT          285 a          159 c          118 g          197 t
ORIGIN      
        1 aacgccaaac ataatcccca agcaaaaaat acaaaaccaa tttgaattgc tgataatcca
       61 agaataagtg gcgaataagc taaaattgta aagaaacaat aataataaaa cattccacta
      121 aaagcgattt gtaaaaatgg tcgatatttg aataaatgga gcatttgctt gatagcaacc
      181 tcatttttct ctgtaggtgc tggtgcgact ttcttcggtt cttttacttt aaataaaata
      241 agtaaaaatg cgataaaaat tagacaagct gtcgcaaaaa atggatagcg ccaagaaata
      301 ttacctagaa tacctcctag tagtggtcca aatgccatcc caaggcccat ggaagcttcg
      361 taaatcccaa ttgcatgtcc tggtgtctct gataaagcaa taagcattgt catcgcagta
      421 gccatgaaca tagagttacc aaaaccccaa ccagcccgaa aaatagataa agcaccaatt
      481 gtatcagata aaccacataa taatgcaaaa atagtaacaa taaatagtcc gataacgatt
      541 aactttttat ctccaagctt tccggcaaca ataccaatcg gaatcatcat aatcgccata
      601 gtaaaaatat aagcggtgaa taacatttct acttgcgagt gagatgcccc aatactttct
      661 gcaatagaag gtaaaagtgg atcaacaacc cctattccca taaacgcaag caaactagct
      721 gctgctgtta tccatttccc cgtattcatt tccttgtct
//
LOCUS       DASDXX010000382          759 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.390, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000382 DASDXX010000000
VERSION     DASDXX010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.390"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..676)
                     /locus_tag="U0280_003004"
     CDS             complement(<1..676)
                     /locus_tag="U0280_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272903.1"
                     /translation="MKKSNVFLLITLLVGLVFISFGCSEEKETPKKTAKEVQGVQIKT
                     KEFQRVVGWLSKDSVLLQTKKSGVTYFEELNIYNEKKRPIFNTKESISEVQISPDYRN
                     ILLYSAESAEKATMRIIALNDGSTVASRSTKPLTTTFYWNDESPEKIMFVSYSPEWNF
                     QIENWDYTLNQLHKIDVASPFISWYGDNLVISNNKDKPDDELGNLYLQDIRDNATKNL
                     IVANIMQ"
BASE COUNT          234 a          141 c          113 g          271 t
ORIGIN      
        1 attgcataat attagctaca attaaatttt tagtagcgtt atctctaatg tcttgtaaat
       61 aaaggtttcc taattcatca tccggtttgt ctttattgtt cgaaatcacc aaattatctc
      121 cgtaccagga aataaaaggt gacgcgacat ctattttatg cagttgattc aacgtatagt
      181 cccaattttc tatttgaaaa ttccattctg gactatatga gacaaacatg attttttcag
      241 gtgactcatc attccaataa aatgtcgtcg ttagaggctt tgttgaacgt gaagcaacag
      301 ttgaaccatc attcaaagcg attattcgca tcgtggcttt ttcagctgat tcagcagaat
      361 aaagtaagat atttcgatag tctggactaa tttgcacttc agaaatagat tccttcgtat
      421 taaagattgg tcttttcttt tcattatata tattcaattc ttcaaaatac gtaactccag
      481 attttttggt ttgcagcaaa acagaatctt ttgacaacca accaactact cgctggaatt
      541 ctttggtttt gatttgaaca ccttgtactt cttttgcagt cttttttggc gtttcttttt
      601 cctccgagca accaaaagag ataaaaacca atccgactaa taaggtaatc agcaaaaaaa
      661 catttgattt tttcatctct ggcctccaat ctctctatgc taaaatttta cccttttcaa
      721 aggaagctaa aacaatgcgt tatagaaaga ttagcttta
//
LOCUS       DASDXX010000383          750 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.391, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000383 DASDXX010000000
VERSION     DASDXX010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.391"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            24..698
                     /gene="radC"
                     /locus_tag="U0280_003005"
     CDS             24..698
                     /gene="radC"
                     /locus_tag="U0280_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM2272904.1"
                     /translation="MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVL
                     TIANRIIMKFKNVGEMQYASIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVV
                     VRCPEDAVKLVMPELAFLFQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRL
                     ALRKSAASIMCFHNHPSGDPTPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISL
                     KEKGYF"
BASE COUNT          250 a          122 c          151 g          227 t
ORIGIN      
        1 ttgataaaat aggagctgtt cttatgttga tacatgaaat atcagagaat gaaaaaccac
       61 gcgaaaagct acagaattat gggatagaag cactttcatc ttcggaattg gttgctttaa
      121 ttattgaaac agggactaaa aatgagtcag ttttgacgat agctaatcga atcatcatga
      181 aattcaaaaa cgtgggcgaa atgcaatatg cttctataga agaatttcag ttagttaatg
      241 gtatcggaat agcaaaagct tctaaaatca tggctgcgat tgaacttgga agacgtatcg
      301 gcatcgtaac ggagcaggaa gaagtggttg ttaggtgtcc cgaagatgcg gtaaaacttg
      361 taatgccaga gcttgctttt ctttttcaag aacatttcca ttgtctattt ttaaatacca
      421 aaaaccaagt aatatatcgg caaacgattt ttgttggtgg tctgaatgct tccatcgttc
      481 atcctagaga agtttttaga ttagcgctca ggaaatcagc agcatcaatc atgtgctttc
      541 acaaccatcc atctggtgat ccgactcctt ctagtgaaga cttgcttgta acaaaaaggt
      601 tagctgaagc tggtaatatt gtcggaatta ccttactaga tcatattatc attggcaaga
      661 ataagtatat tagtttgaaa gaaaaaggtt acttttaaat caagaatact gttcacaaaa
      721 tgtctacaga caacgtttgc taccttatgc
//
LOCUS       DASDXX010000384          739 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.392, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000384 DASDXX010000000
VERSION     DASDXX010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.392"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..652
                     /locus_tag="U0280_003006"
     CDS             <1..652
                     /locus_tag="U0280_003006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2272905.1"
                     /translation="YVKISQDNKPIGWIDSENVIDEKTMDSIENDEESIIPEELIDKV
                     NDYVTIENNEFVLSNKAEDVLTSEEFVEVEGQIDQTNAEIEADETLSETHIEGNIIVQ
                     EIYEDEPNQLLKASKKAYIKAKYTWWGMQIQFSHKAVVDFNDFYWGAGTIGGLGANKR
                     MGKFLAKKGIKIASRYAVCLSLFGGGLAWGMGKKDKGKGVNLNCVLYVPATITTAK"
BASE COUNT          296 a           76 c          152 g          215 t
ORIGIN      
        1 ctacgttaaa ataagccaag ataacaaacc tattggttgg atagactctg aaaatgtaat
       61 tgatgaaaaa actatggatt ctatagaaaa tgatgaagaa tcaattattc cggaagaatt
      121 aattgataaa gtaaatgatt atgtaacaat agaaaacaat gaatttgtat tgtctaacaa
      181 agcggaagat gttcttactt cggaagagtt tgttgaagtt gaagggcaga tagatcaaac
      241 taatgctgaa atcgaagctg atgaaacact atcagaaaca catattgagg gaaacataat
      301 agttcaagaa atctatgaag atgaaccaaa tcaacttctt aaggcatcta aaaaagctta
      361 tataaaagct aaatatacat ggtggggtat gcaaatccaa ttttctcata aagctgttgt
      421 tgattttaac gatttttatt ggggggcagg tacgataggt ggattaggtg caaataaacg
      481 aatggggaaa tttttagcaa aaaaaggaat aaaaatcgca tcacgttatg ctgtttgttt
      541 gagtttattt ggtggtggtt tagcatgggg aatgggtaaa aaagataaag gaaaaggtgt
      601 aaatttaaat tgtgtattat atgtccctgc gacaataact acagctaaat aaaagaaaag
      661 agtgtataca tgaaaagaaa taaactaaag ataatatttc gaataataga gttggtattg
      721 ggaattttaa ttattatcg
//
LOCUS       DASDXX010000385          731 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.393, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000385 DASDXX010000000
VERSION     DASDXX010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.393"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            135..371
                     /locus_tag="U0280_003007"
     CDS             135..371
                     /locus_tag="U0280_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015084540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272906.1"
                     /translation="MPDWDFNNPESMKAWDLASGSYAEQVSGEVRAVVGSDLRKGNIW
                     ENVELPRLKNNPNVTKITTIDPKTGLEKIIFERK"
     gene            377..610
                     /locus_tag="U0280_003008"
     CDS             377..610
                     /locus_tag="U0280_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272907.1"
                     /translation="MKITGNSSQVKFDLENGYVVKADGEMLVGGEFVVFKDSMKNWEP
                     PYENKKLSESEVQEIIQQVKQSTNENTVQISFE"
BASE COUNT          294 a           78 c          158 g          201 t
ORIGIN      
        1 gcaacagaaa ggataataaa tttcgtacat aaaaacaata aactttccct cccaagaaag
       61 ccagtggggc tgatatagct aaaagtaaag gtggcgttac tttagaatca acaataggaa
      121 ataaaaatat tgaaatgcca gactgggatt ttaataatcc tgagtcaatg aaagcatggg
      181 atttggcttc tggttcttat gcagaacaag tttctggtga agttcgtgca gtagttggtt
      241 cggatttgag aaaaggaaat atttgggaaa atgttgagtt acctagatta aaaaataatc
      301 ctaacgtaac gaaaataaca acgattgatc ctaaaacagg acttgaaaaa ataatttttg
      361 aaaggaagta agtgaaatga aaattacagg taatagttca caggtgaaat ttgatttaga
      421 gaatggatat gtagtgaaag cagatggaga aatgttagtt ggaggtgaat ttgttgtatt
      481 taaagattct atgaagaatt gggaacctcc atatgaaaat aaaaagcttt ctgaatctga
      541 agtgcaagaa attattcaac aggtaaaaca gagcacaaat gaaaatacag tacaaatttc
      601 atttgaataa aagaaatccg agaagtagag tagttgttta atcctaaatg ttaacaggtg
      661 gacattggga ataataagga atggcggaag ataaaatatg gataattttt ataaaggttt
      721 cgaaggatat c
//
LOCUS       DASDXX010000386          728 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.394, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000386 DASDXX010000000
VERSION     DASDXX010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.394"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..393)
                     /locus_tag="U0280_003009"
     CDS             complement(<1..393)
                     /locus_tag="U0280_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272908.1"
                     /translation="MSEIQHFSEFIDGATNYWYENKFDRCNACDMVNVMLTVFDGDIS
                     TPGNQSNKIPRRISVSAKVYDVDRWNQSREELIELLNWVSGDLFEMSFEKNEELFDAF
                     PLELPSPRKECITLFSGGLDSFAGSYYNF"
     gene            complement(393..>728)
                     /locus_tag="U0280_003010"
     CDS             complement(393..>728)
                     /locus_tag="U0280_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272909.1"
                     /translation="NVTGISDVLLKALKIALGETVKAEQNETYFVEKLLYEIIFLSLE
                     NTMQGALETLEEGITIPQIRKEFIKPLADKLFEEDIKTEIPALVLGKTTLAVINNKIA
                     DKLKNFGGF"
BASE COUNT          232 a          143 c           96 g          257 t
ORIGIN      
        1 gaagttgtaa taggagcctg caaaagaatc taatccacct gaaaatagtg tgatacactc
       61 ttttcgagga cttgggagtt ctaatggaaa ggcgtcaaat agttcttcat ttttctcaaa
      121 agacatctca aataggtctc ctgataccca attaagtaat tctattaatt cctctctaga
      181 ttgattccaa cgatccacat catatacttt tgcagataca gatatcctcc gaggaatttt
      241 attactttgg ttacctggtg tagaaatatc tccatcgaac actgttaaca taacgttaac
      301 catatcacat gcattacagc gatcaaattt attctcatac caataatttg tagccccatc
      361 tataaactct gaaaaatgtt ggatttcact cattaaaagc caccaaaatt ttttaactta
      421 tcagcgattt tattatttat tacagctaaa gttgttttac ctaatactaa agctggaatt
      481 tctgtcttta tatcttcctc aaatagctta tcagcaagag gttttataaa ctcttttcga
      541 atttgtggaa tagttatccc ttcctccaaa gtttccaaag ctccttgcat agtgttttct
      601 aaagataaaa aaatgatttc atacaatagt ttctctacaa agtaagtttc attttgttca
      661 gctttaacag tttctcctag cgctattttt aaggccttca acaaaacatc tgatattcca
      721 gttacatt
//
LOCUS       DASDXX010000387          723 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.395, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000387 DASDXX010000000
VERSION     DASDXX010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.395"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..708
                     /locus_tag="U0280_003011"
     CDS             <1..708
                     /locus_tag="U0280_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM2272910.1"
                     /translation="PYFLQDFFELGSSPKDITYLIKQHMPLSAESNFLDLACGKGAVS
                     IGIAKELGNPVKGIDLIPAFIEEAKCKAKEAQVESLCQFEVGDVNKSVQNEKNYDAVI
                     FGAAADILGNPAETLEKLQGTVKEGGYIIIDEAYVPELAHNNQVKYQNYEYLTRNEWL
                     NLFEQNQLQLVEELEGTAEVDFELEKQHLLTRANELIQQYPEKKTLFEGYLKSQWSEY
                     DDLEEHLIAVTWILHKK"
BASE COUNT          270 a          101 c          156 g          196 t
ORIGIN      
        1 ccgtattttt tacaagattt ttttgaattg ggtagtagtc cgaaagatat tacttattta
       61 attaagcaac atatgccgtt atcagctgaa agtaattttt tggatttagc ttgcggaaaa
      121 ggagctgttt ccattggtat cgctaaggaa ctaggaaacc ctgtcaaagg aatagattta
      181 attccggcat ttatagaaga agcaaaatgc aaagcgaaag aagcgcaagt agagtcactg
      241 tgccaatttg aagtaggaga tgtaaataaa tcggttcaaa acgaaaaaaa ttatgatgcc
      301 gttatatttg gtgcagcagc agatatactt ggaaatccag cagaaacgtt ggaaaaattg
      361 cagggaactg ttaaagaagg cggttatatt attatagacg aagcatatgt gcctgaatta
      421 gcgcacaata accaggtgaa gtatcaaaat tatgaatatc tcactcgaaa cgaatggctg
      481 aatttatttg aacagaatca attacaattg gtggaagagc tagagggaac agcagaagtg
      541 gattttgaac tggaaaagca acacttatta acaagagcca atgaattgat tcaacaatat
      601 ccagagaaaa aaaccctttt tgaaggatac cttaagagcc aatggagtga atacgatgac
      661 ttagaggaac atcttattgc tgttacctgg attttacata aaaagtaaac attgaaagga
      721 agt
//
LOCUS       DASDXX010000388          709 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.396, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000388 DASDXX010000000
VERSION     DASDXX010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.396"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..596)
                     /locus_tag="U0280_003012"
     CDS             complement(<1..596)
                     /locus_tag="U0280_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272911.1"
                     /translation="MNTLEKRQHEILTNPLHFCKKSGDFAKHSMSIKLSKNELFDVDF
                     VTGIYFVEKGIVMKGTQIDDYIGYDQLLKPGDVCNFSSFMSSDLKRNIGAQLLSPSSS
                     VITAVDRDFFIFMVEKHVSVEEFMLYQAKKEIMILQRRCLLNTLKVKDRVKHLIAAIG
                     YEYGISNGDNIQIPQELSTTFLSKFMGITREYLSLTLS"
BASE COUNT          254 a          128 c           96 g          231 t
ORIGIN      
        1 tcacttagag ttaagctaag atactctctt gtaataccca tgaatttaga taaaaatgta
       61 gtagataatt cttgcgggat ttgaatgtta tctccattgg aaataccata ttcataacca
      121 attgcagcaa tcaagtgttt tacgcgatct ttcactttaa gcgtattaag caaacagcga
      181 cgttgcagta tcataatttc ttttttcgct tgataaagca taaattcttc tacactaaca
      241 tgcttttcta ccataaaaat gaaaaaatct ctatctactg ccgtgatgac gctagaactt
      301 ggcgagagta attgagcacc aatattgcgt tttaaatcag aagacataaa agatgaaaaa
      361 ttacagacat ctccaggttt tagcaattga tcgtacccaa tatagtcatc tatttgtgtt
      421 cctttcataa caataccctt ttcaacaaag tagatacctg taacaaaatc aacatcaaac
      481 agttcatttt tagaaagttt aatactcata ctatgcttag caaaatctcc agacttctta
      541 caaaaatgaa gtggattggt caaaatttca tgttgtcgtt tttctaatgt gttcattgca
      601 aattcctcct ctaaagtata atatcacaca atgaaaacac cctagagaag gaataagcta
      661 aataaaataa cgttactatc ataaaaaaag aactttttca ctatttgtt
//
LOCUS       DASDXX010000389          703 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.397, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000389 DASDXX010000000
VERSION     DASDXX010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.397"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            77..295
                     /locus_tag="U0280_003013"
     CDS             77..295
                     /locus_tag="U0280_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEM2272912.1"
                     /translation="MYCPKCGHALDNHENQCPNCLTPIIYQSNNNGKAQKAGEIMEES
                     GKLMSGCGCLMTLLITIPVIVILIIMFL"
     gene            311..>703
                     /locus_tag="U0280_003014"
     CDS             311..>703
                     /locus_tag="U0280_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272913.1"
                     /translation="MSKYSYLLKKWWFWALAILFLVILFYSFWVIIYLVALASLIFGI
                     VKVVKNENRRKYTIILTISAIFLITFSLIRVVQMYNYVINNPEETTANEQKKNTVQDE
                     QTEKPAQEDAAEDEQAEEPAQDDVSTPSK"
BASE COUNT          257 a          109 c          126 g          211 t
ORIGIN      
        1 attcaagttt tccaggagga taactctttt tatccttatg attatgggtg ctaataaatt
       61 ttgacgaggt gaacatatgt attgccctaa atgcggacat gcactagaca atcacgaaaa
      121 tcaatgtcct aactgtctaa caccaatcat ttatcaaagc aacaacaacg gaaaagcaca
      181 aaaagccggc gaaattatgg aagaatctgg taaattaatg tcaggatgtg gttgtttaat
      241 gacattgttg ataactattc ctgtcatagt aattttaata attatgtttt tataaaaagg
      301 agataacggg atgagtaagt atagttactt gttaaaaaaa tggtggtttt gggctcttgc
      361 tatattattt ttagttattt tattttacag cttttgggta ataatatact tggtggcact
      421 agcttcctta atattcggga tagtaaaagt tgttaaaaat gaaaacagac gaaaatacac
      481 aataatattg actatatccg ctatatttct aatcaccttt tcactaataa gagttgtaca
      541 gatgtataac tatgttatta ataatccaga agaaactaca gcaaatgagc aaaaaaagaa
      601 tactgtccaa gatgagcaaa cggaaaaacc cgctcaagaa gacgctgccg aggacgagca
      661 agcagaagaa cctgctcaag atgatgtatc tacaccctct aaa
//
LOCUS       DASDXX010000390          700 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.398, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000390 DASDXX010000000
VERSION     DASDXX010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.398"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            57..665
                     /locus_tag="U0280_003015"
     CDS             57..665
                     /locus_tag="U0280_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2272914.1"
                     /translation="MSFILYKPLINYLSEQAANPRGIIGEITTKIWSSYFEDLSKWTI
                     SNTELSNVTQVLDIGYGGGSNVKNLAELNKNWTIYGVDISEESYKTATNLNKKAINNG
                     KVELSVQDVASMNYQAGIFDVVYAIQTHMYWDNPKKGFEEIYRVMSQKGVLIVSSEKD
                     KIDYHMDEYKTTATLTVLLKEIGFREVVEKEKGNWVLYTIRK"
BASE COUNT          268 a           86 c          139 g          207 t
ORIGIN      
        1 cgaaaataac aaaaagaaag aaaataacac taatcatttt gggaggtatc atcggtttga
       61 gttttatttt atataaacca ttaattaact atttaagcga acaagcggcg aatccgcgtg
      121 ggattattgg tgaaatcact acgaaaatat ggtcatccta ttttgaagat ttgagtaagt
      181 ggacaattag taatactgaa ctaagcaatg ttacacaggt attagatatt ggttatggtg
      241 ggggctccaa tgttaaaaac ctagcggagc taaataaaaa ttggactatt tacggagtgg
      301 atatttctga agaatcttat aaaacagcca caaatttgaa taaaaaagca atcaataatg
      361 gcaaagtaga gctatctgta caagatgttg catcgatgaa ttatcaagca ggtattttcg
      421 atgtagttta tgctatacaa acccatatgt attgggataa tcctaaaaaa gggtttgaag
      481 aaatctatcg agtaatgtcg caaaaaggtg ttttaatagt gtcgtctgaa aaggataaaa
      541 ttgattatca tatggacgaa tataaaacaa ctgccacact aacagtactc ttaaaagaaa
      601 ttggctttag agaagtagtg gagaaagaaa agggaaattg ggttttgtat acaatcagaa
      661 aataattgcg agttatatta tcttttgaaa tatctgttac
//
LOCUS       DASDXX010000391          694 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.399, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000391 DASDXX010000000
VERSION     DASDXX010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.399"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            140..457
                     /locus_tag="U0280_003016"
     CDS             140..457
                     /locus_tag="U0280_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase
                     family protein"
                     /protein_id="HEM2272915.1"
                     /translation="MDFKEYQILANRTAATHEQALTNYGLGITGEAGEVADLIKKYAF
                     HGHDLDKESLTKELGDVLWYVSQIAKWADISMETVAELNIEKLKRRYPQGFSTERSKL
                     HID"
     gene            complement(507..>694)
                     /locus_tag="U0280_003017"
     CDS             complement(507..>694)
                     /locus_tag="U0280_003017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM2272916.1"
                     /translation="AIYIGRFSRLHSIHLLTQPIDSLQIMFSVFHWPFWNFVFYFSII
                     QYVIYTLFSRFSSSLKN"
BASE COUNT          279 a           91 c          139 g          185 t
ORIGIN      
        1 gactttaaag ataaaaaatt tttaaagatg aaatgcattg atagagcatc agttcgcata
       61 agttggaaat agtcaagact gcaaaggaaa aaaattatct gttatagtaa gaaagtgaga
      121 gaagcaagga ggaaaacata tggattttaa agagtatcaa attttagcga atagaactgc
      181 tgcaacacac gaacaggcac taacaaatta cggacttggt attactggag aggccggtga
      241 agttgccgat ttgattaaga aatatgcttt tcatggacat gatttagata aggaatctct
      301 aacaaaagag ctaggggatg tactttggta cgtatcacaa attgctaaat gggcagatat
      361 aagcatggaa acagtagcag aattaaatat cgagaaatta aagcgtcgtt atcctcaagg
      421 tttttcaaca gagcgaagta agctacatat cgattaaaaa aacgtttgta tttaagaaaa
      481 ttaattttcc taaaatacaa acgtttttag ttttttagtg agctagaaaa cctgctaaat
      541 agcgtataaa ttacatattg aataatcgaa aagtaaaaca caaaattcca aaatggccag
      601 tgaaaaacac taaacataat ttgcaatgag tcaattggct gcgtaagtaa atggatggag
      661 tgtaaacgag agaaccgtcc aatgtatatc gcat
//
LOCUS       DASDXX010000392          686 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.400, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000392 DASDXX010000000
VERSION     DASDXX010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.400"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            12..671
                     /locus_tag="U0280_003018"
     CDS             12..671
                     /locus_tag="U0280_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272917.1"
                     /translation="MKQNILNNYVSTNDFPVITRGKRKYLTYEGLEDSYVYILKKGII
                     KTSIISRDGREFNLNYINKMDIISLLKDEYSQFANAPFNIRVESDTAELYQVDRVRFW
                     KDVNRDVDLQIYVKDYYRTRLLQSIKKMQQMLMNGKLGAICTQLYELYTLFGVEIAPD
                     QYLIDFLVSNEEIGHFCGINSASSVNRIFQQLKKEGVITMQNRYIIIKKLDVIQENVI
                     F"
BASE COUNT          248 a           95 c          136 g          207 t
ORIGIN      
        1 aggttaagaa catgaagcaa aatattctta ataattatgt gagcacaaat gattttccag
       61 ttattacaag gggaaaacgt aaatatttaa cttacgaagg acttgaagat tcatatgtgt
      121 acatacttaa aaaagggatt attaaaacga gtattatttc aagggatggc agggaattta
      181 atttaaacta cattaataaa atggacatta tctcactttt aaaagatgag tattcgcagt
      241 ttgccaatgc gccgtttaac attcgtgtgg agtcagacac agcagaacta tatcaagttg
      301 accgggtaag gttttggaaa gacgtgaatc gtgatgtgga tttgcaaatt tatgtgaaag
      361 attattaccg tacgaggctg ctacaatcca taaaaaaaat gcagcaaatg ctaatgaatg
      421 ggaaacttgg agcaatttgt acgcaactct atgaacttta tacgcttttt ggagtggaaa
      481 ttgcgcctga tcagtatttg attgattttc tagtaagtaa tgaagaaatt ggtcattttt
      541 gcgggattaa ctccgcaagc agtgtgaacc ggattttcca acaactcaaa aaagaaggcg
      601 tcattacgat gcaaaaccgc tatattatta ttaaaaaatt agatgttatt caagaaaacg
      661 ttatttttta acagtagaaa agcact
//
LOCUS       DASDXX010000393          686 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.401, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000393 DASDXX010000000
VERSION     DASDXX010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.401"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..189
                     /locus_tag="U0280_003019"
     CDS             <1..189
                     /locus_tag="U0280_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2272918.1"
                     /translation="SNNILSYFNLSNSLRGKEDEKLSFPKCSGKHYAIKLREPIPEDP
                     PILANVGKILISCLKNTI"
     gene            254..610
                     /locus_tag="U0280_003020"
     CDS             254..610
                     /locus_tag="U0280_003020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2272919.1"
                     /translation="MALNAKSITIGLPVSDLEKSASWYEKLFMSDEKLTPVEGVVEYQ
                     IGSVWIQLFEEKINVSENVLRIGVEDLDVEFERLKKLGVITDEVIEDAPGIIRYFVFS
                     DPDGNKLSFYWLYDQE"
BASE COUNT          245 a           79 c          145 g          217 t
ORIGIN      
        1 tctaataaca ttctatctta ttttaactta agtaatagtt tgagagggaa agaagatgaa
       61 aagctatctt ttcctaaatg ttctggcaag cattacgcga ttaagctgag agaaccaata
      121 ccagaagatc cgccaatatt agctaatgtg ggaaaaattt taatctcctg tttgaagaac
      181 acaatctaga acaatattgt ttgactatga aatgttaaaa taattgcagg ctaatgaaaa
      241 ggagagataa gatatggctt taaatgcaaa gagtatcact ataggactac cagtaagtga
      301 tttggagaaa tctgctagtt ggtatgaaaa actatttatg agtgatgaaa aattaacacc
      361 agttgaaggc gttgttgaat atcaaattgg ttcagtttgg attcaacttt ttgaagaaaa
      421 aataaatgtt tcagaaaacg ttttacgcat aggggtagaa gatttagatg tggaatttga
      481 acgtttaaaa aaacttggag taataactga cgaggtgata gaagatgcac ctggtattat
      541 tcgatatttt gtcttctctg atccagatgg taataagttg tcattctatt ggttgtatga
      601 tcaggaatag atttgaacag gattatagga tggatgtaac gcttaaacga cggatgtatg
      661 acgtcgtttt ttgatgttag aaataa
//
LOCUS       DASDXX010000394          686 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.402, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000394 DASDXX010000000
VERSION     DASDXX010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.402"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..682
                     /locus_tag="U0280_003021"
     CDS             <1..682
                     /locus_tag="U0280_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2272920.1"
                     /translation="VSQDLENITGLKIILDNDANVAALGERWKGAGEGGANVVFVTLG
                     TGVGGGIFAEGKILHGIRGAAGEIGHVTVVPENGYDCTCGKKGCLETVASATGIVRVA
                     KDLAKEYTGKSALKDAINNDETITSKLIFELGAEDDALANETIDKISFYLALALSHIG
                     NMLNPEKIIIGGGVSAAGDQLLTPVKTYFETMVFPAVKESTKLSIATKGNDAGIIGAA
                     WLALPSED"
BASE COUNT          224 a          102 c          163 g          197 t
ORIGIN      
        1 tgttagtcaa gatttagaaa atattactgg tttaaaaatc atattagata atgatgctaa
       61 tgttgcagct cttggtgaac gctggaaagg cgcaggcgaa ggtggggcta atgtcgtttt
      121 cgtaacactt ggaacaggcg ttggcggcgg aattttcgca gaaggcaaaa ttttacatgg
      181 tattcgcgga gcagctggtg aaattgggca tgtaacagta gttcctgaga atggttatga
      241 ttgtacctgt ggcaaaaaag gctgtttaga aactgtcgca tcagcaacag gaatcgttcg
      301 agtagcgaaa gatttagcga aagagtatac tggtaaatcc gcacttaaag atgcaataaa
      361 caacgatgaa acaattactt ctaaattgat ttttgaacta ggagcagaag atgatgcttt
      421 agcaaatgaa acaattgata aaatttcttt ctatttggct ttagcgctca gtcatattgg
      481 aaacatgtta aatccagaga agattattat tggtggtggc gtttcagcag caggcgatca
      541 attattaaca ccggttaaaa cttattttga gacaatggtt ttcccagctg ttaaagaatc
      601 cactaaatta tctattgcga caaaagggaa tgacgcaggg ataattggag ctgcatggtt
      661 agcactacca agtgaagatt aatatt
//
LOCUS       DASDXX010000395          665 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.403, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000395 DASDXX010000000
VERSION     DASDXX010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.403"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            32..361
                     /gene="yneA"
                     /locus_tag="U0280_003022"
     CDS             32..361
                     /gene="yneA"
                     /locus_tag="U0280_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division suppressor protein YneA"
                     /protein_id="HEM2272921.1"
                     /translation="MTMKLIWDKFYVSIIFVLTCIILGIILMCTVVGGGNDYSEVNVS
                     EGDSLWALADQYAGKSDMAKADFVSWVEKENNLADGHVEAGDSVVIPVHKTKLIKSDS
                     TIQLANQ"
     gene            455..>665
                     /locus_tag="U0280_003023"
     CDS             455..>665
                     /locus_tag="U0280_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HEM2272922.1"
                     /translation="MLEKAKIDRINELSKKKKAGTLTATEKVEQDNLRKEYIKSFRTH
                     MKGTIENTTIIDPNGKDVTPHKVKQL"
BASE COUNT          255 a           83 c          140 g          187 t
ORIGIN      
        1 cgaacataca ttctttttgg agggattatt aatgactatg aaattaattt gggataaatt
       61 ttatgtttct attatatttg tacttacttg catcatacta ggaatcattt taatgtgtac
      121 tgtagttggc gggggaaacg actattcaga agtgaacgta agtgaagggg attctttatg
      181 ggcattagca gatcaatatg cagggaaaag tgatatggca aaagcagatt ttgttagctg
      241 ggtagaaaaa gaaaataatt tagctgacgg tcatgtggaa gcaggagatt cagtagttat
      301 tcctgtacac aaaacaaaat taataaagag tgatagtacg attcaactag caaaccagta
      361 aggtcgattt agtggccgtt tatgatataa tattagaaag tagcgatcat gctgctttct
      421 tatttttatt ctatagaaga aaaggagaat aacgatgcta gaaaaagcta aaatagatcg
      481 tattaatgag ctttctaaaa agaaaaaagc cggaacatta actgctacag aaaaagtgga
      541 gcaagataat ttaagaaaag aatacatcaa gtcttttcgt acgcatatga aggggacaat
      601 agaaaataca acgataatcg acccaaatgg aaaagatgta acgccgcata aagtgaaaca
      661 actta
//
LOCUS       DASDXX010000396          664 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.404, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000396 DASDXX010000000
VERSION     DASDXX010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.404"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            126..>664
                     /locus_tag="U0280_003024"
     CDS             126..>664
                     /locus_tag="U0280_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272923.1"
                     /translation="MEMKKLIKCTAPIFIATLIILPVSPSISALANETSEISEGINAT
                     EKTIETEELVVEEISNDEYQVLDKETNETTSIEFSKNHMQSTITNPDGTIDTMIKKDN
                     LIYLNGEVIGEEVKEESRQLLKASAYKYVTTFKTKMSLKKTSASIAVSLAGLLGGPVG
                     VFSTVAGMLLTLKSYAPSK"
BASE COUNT          247 a          103 c          122 g          192 t
ORIGIN      
        1 gtatcaataa ccctcacttt tggtcgttca cgacaagaat cgggcatttc attacatttt
       61 tggttataca ttggcttttc atgatacatt acatgtgtaa gacatataaa ggagatggta
      121 cataaatgga aatgaaaaaa cttattaaat gcactgcacc aatctttatt gctacgctca
      181 ttattttgcc tgtttctccg tctatttcag cattggcgaa tgagacctca gagattagcg
      241 aagggattaa tgcaacagaa aaaacaattg aaacagaaga gcttgtcgta gaagaaatta
      301 gtaatgatga atatcaagta ctggataaag agacaaatga aacaacttca attgaatttt
      361 caaaaaatca tatgcaatct actattacaa atccagatgg cactatagac acaatgatta
      421 aaaaggataa cttaatttac ctaaatggtg aagttatagg tgaagaggta aaagaagaat
      481 cgagacaatt attaaaagcc tctgcttata aatatgttac gacgtttaaa acaaaaatgt
      541 cactaaagaa aacaagtgca tctattgcag tgtcattagc tggtttgctt ggaggacccg
      601 ttggagtatt tagtacagta gcaggtatgc tactaacatt gaaatcttat gccccgagta
      661 aaga
//
LOCUS       DASDXX010000397          657 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.406, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000397 DASDXX010000000
VERSION     DASDXX010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.406"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            400..>657
                     /locus_tag="U0280_003025"
     CDS             400..>657
                     /locus_tag="U0280_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272924.1"
                     /translation="MEIVIQRAQNVLKLIDEEFPNQKLYNGIIRDIYVLTEKILKSAE
                     GNCLITEKIDLNSLGRQFVDNGGSYNSPVILEFEKLVNQLKN"
BASE COUNT          271 a           76 c          132 g          178 t
ORIGIN      
        1 ggaacgaaaa aatatacctt taaattaact taatgagtgg ctaaatatag aactaaaata
       61 gatgataaag ttattgaaat ggatagagaa attctacctc agggagtaat agattccttc
      121 ttagatggaa attatcgtac agtaaaaact actgaggaaa taacggtgta tagagagtat
      181 ttggtggaaa tgcaaagtct acaggaagtt ttgtgacttc agagaagaca ataagtcgaa
      241 tagacgcaaa aatagatatg gcattattac ctggatggaa gaatactcgc atgtacgaag
      301 cagaaataat tattcctaaa ggccagcaaa ttaatattgg ggaaaattgc acctcaagta
      361 atcgagtcga cagatacaat attaaaagga ggggtatagt tggagatagt aatacaacgc
      421 gcacaaaatg ttttaaaatt aattgatgaa gagtttccta accaaaaatt atataatggg
      481 ataataagag atatttatgt attaacagaa aagatactta aatctgctga gggaaactgc
      541 ctaatcacag aaaaaataga tttgaatagt ctgggcagac agtttgtaga taatggtggt
      601 tcttataaca gtccagtaat attagaattt gagaaacttg taaatcaact aaaaaat
//
LOCUS       DASDXX010000398          656 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.407, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000398 DASDXX010000000
VERSION     DASDXX010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.407"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>656
                     /locus_tag="U0280_003026"
     CDS             <1..>656
                     /locus_tag="U0280_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM2272925.1"
                     /translation="SYLTKSEYGVAEIYAKTYGANKKEAVLISLAASHISKKIRIYEI
                     REQNISVLPKPDKEALEMLPNVEIINTDMQIEIREFVGRNSLRSPRYIFNLLDRLGPK
                     KCTLCDCEIPELIEGAHIWPVADIKADKSIPNDQKLNYAIDGHNGIWLCENHHKMFDE
                     GLIRIEHDGTIRLKDDLNDNDKSFIITTTTNTLLPDGVISEEAEIYLAKRDEASTYEA
                     "
BASE COUNT          258 a           83 c          128 g          187 t
ORIGIN      
        1 ctcttattta actaaaagtg agtatggtgt agcagagata tatgcaaaaa catatggtgc
       61 aaacaaaaag gaagcagtac ttatatcgct tgcagcttca catatttcta aaaaaattag
      121 aatctacgag ataagggaac agaatatatc tgttttgcca aaaccagaca aagaagcctt
      181 agaaatgtta ccgaatgtag aaattataaa tactgatatg cagatagaaa taagagagtt
      241 tgtaggaaga aatagcttaa ggtctccaag atatatattt aacttattag ataggttagg
      301 tcctaaaaaa tgcactttat gtgattgtga gattccagaa ttaattgaag gggcacatat
      361 ctggcccgtt gctgatatta aagcggataa atctataccg aatgatcaaa aacttaatta
      421 tgcgattgat ggacacaatg gaatttggtt atgtgaaaac catcataaaa tgttcgatga
      481 aggtttaatt agaattgaac atgacggaac aattagatta aaagatgatt tgaacgataa
      541 tgataaaagt tttattatta ctacaacgac aaacacactt ttacctgatg gtgtaattag
      601 tgaggaagca gaaatatatc tagccaaaag ggatgaggca agtacttatg aagctt
//
LOCUS       DASDXX010000399          656 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.408, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000399 DASDXX010000000
VERSION     DASDXX010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.408"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..148
                     /locus_tag="U0280_003027"
     CDS             <1..148
                     /locus_tag="U0280_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SH3-like domain-containing protein"
                     /protein_id="HEM2272926.1"
                     /translation="WSAPYYSEGSTFISSATAPSYAKREAKTERGIYYQVKLGDKIIG
                     WLDK"
     gene            167..>656
                     /locus_tag="U0280_003028"
     CDS             167..>656
                     /locus_tag="U0280_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2272927.1"
                     /translation="MPSTDIAYSRTGKITNTSGHAVWTQPCGQINSTLKGPASDYLNK
                     EITIWRKVENKRGTYYQFSETKTPNIKAWLDARAITLYDQVHFNEEYNQMAVISTVIG
                     HAVWSTPYLQSDSKLIAPASNYEGKRVEIIRRAKTTRSIYYQFSYDNKVIGWLDTRAF
                     SLI"
BASE COUNT          250 a          104 c          116 g          186 t
ORIGIN      
        1 ttggtctgca ccatattatt cagaaggatc aacatttata tcaagtgcaa ctgcaccttc
       61 ttatgcaaaa agagaggcaa aaactgaaag aggaatttac tatcaagtaa aattgggaga
      121 caaaattatt ggttggcttg ataaatgagc ttttaaattt tatgaaatgc cttctacgga
      181 tattgcttac tcaaggaccg ggaaaatcac taacacttct ggacatgcag tatggactca
      241 accttgcgga caaataaact ctactttaaa aggaccagca agtgattatc ttaacaaaga
      301 aataactatt tggagaaaag tagaaaacaa aagaggtact tattatcaat ttagtgaaac
      361 caaaactcct aatataaaag cttggttaga tgcaagagcc ataacactct atgaccaagt
      421 acattttaat gaagagtaca atcagatggc agttatatct acagttattg gacatgcagt
      481 atggtcaaca ccttatcttc agtccgatag taaattaatt gcgcctgctt ctaattatga
      541 aggaaaaaga gttgaaataa tcagaagagc caaaacaaca aggtcaatat attatcaatt
      601 tagttatgat aataaagtaa ttggttggtt agacactagg gctttctcat taatac
//
LOCUS       DASDXX010000400          634 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.412, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000400 DASDXX010000000
VERSION     DASDXX010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.412"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..354
                     /locus_tag="U0280_003029"
     CDS             <1..354
                     /locus_tag="U0280_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272928.1"
                     /translation="KMGLNGLGSLNTLFDFSIQNPYLADFGFGFMACLMAGMAGLIAT
                     SSSLFFLNKKFAYPAAFFIWFLMILPNNSIMFIFQPFTEYGFEIILPIFLVFSLIVLI
                     IVGVLYLYEVKYVKE"
     gene            341..>634
                     /locus_tag="U0280_003030"
     CDS             341..>634
                     /locus_tag="U0280_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxPxxD family membrane protein"
                     /protein_id="HEM2272929.1"
                     /translation="MLKSRYFLLIFSMFLFFSVFWFTQNMDYLSFPKNRELVLIMNGS
                     LYGYISIKSLCLMLVFPYLIFLLLFSKKEQIVALAREKNRLRFYHKILKDTVIA"
BASE COUNT          177 a           98 c           98 g          261 t
ORIGIN      
        1 aaaatggggt taaatggatt aggatcgctt aatactctat ttgattttag cattcaaaac
       61 ccctacttag cagattttgg ttttggattt atggcttgct taatggccgg aatggctgga
      121 cttatcgcca ctagctccag tctgttcttt ttgaataaaa aatttgcgta tccagctgca
      181 ttttttattt ggtttctgat gatacttcca aacaattcaa ttatgtttat tttccaacct
      241 tttacagaat atggctttga aataattttg cctatttttc tagttttcag tttaatagtt
      301 ttgataattg ttggtgtcct ttacttatat gaggtgaaat atgttaaaga gtagatattt
      361 tcttctaatt ttttccatgt tcctcttttt ttctgttttt tggttcacac aaaacatgga
      421 ttacctaagt ttccctaaaa acagagaact tgttctcatt atgaatggta gtttgtatgg
      481 gtatatctca atcaaatccc tttgcttgat gcttgttttc ccgtatctta tctttttact
      541 actattttca aaaaaagaac aaattgttgc tttagctaga gaaaaaaacc gtttacgatt
      601 ctatcataaa atattgaaag atacagttat tgca
//
LOCUS       DASDXX010000401          630 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.413, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000401 DASDXX010000000
VERSION     DASDXX010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.413"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..622)
                     /gene="ltaS"
                     /locus_tag="U0280_003031"
     CDS             complement(<1..622)
                     /gene="ltaS"
                     /locus_tag="U0280_003031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid synthase LtaS"
                     /protein_id="HEM2272930.1"
                     /translation="MKIQTFLSKNYGFFVLAVILYWLKTYIAYQLEFKLGIENLMQQI
                     LLFINPLSGAIFFMGLALFAKGRRSFIWIIVIDFLMSFILYANIVYYRFFSDFITLPN
                     LNAKQMQNMGDMGSSITALLSWHDIIYFADIIILIALLAFRFVKPNKTARIRARKVVG
                     VLTLGIAMFFGNLGLAEIDRPQLLTRTFDRNYIVKYLGMTNYQIYDA"
BASE COUNT          220 a          112 c          108 g          190 t
ORIGIN      
        1 ctgcgtcata gatttgatag ttagtcatac caagatattt aacaatataa tttctatcaa
       61 acgttcttgt tagaagttgt ggacgatcaa tttctgcaag tcccaagttt ccaaagaaca
      121 ttgcgatacc aagcgtcaga accccaacta cttttcttgc acgaatacgg gctgttttgt
      181 ttggttttac aaagcggaaa gcaagtagtg caattaaaat gataatatcc gcgaagtaaa
      241 taatatcgtg ccagctgagt aacgctgtga tactacttcc catgtcgccc atgttttgca
      301 tttgttttgc gtttagattc ggaagtgtaa tgaaatcact aaagaatcga taatatacaa
      361 tatttgcgta aagaataaaa ctcattaaaa agtcaatgac gataatccaa atgaatgaac
      421 gacgtccctt agcaaagagc gcaagaccca taaagaaaat ggccccactt aatggattaa
      481 tgaacagcaa aatttgctgc atcagatttt ctatgccaag tttaaattca agttgatatg
      541 caatatacgt ttttagccaa taaagaatga cggctagaac aaaaaatcca taattcttgc
      601 ttaaaaacgt ttggattttt attttccaat
//
LOCUS       DASDXX010000402          620 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.415, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000402 DASDXX010000000
VERSION     DASDXX010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.415"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            5..>620
                     /locus_tag="U0280_003032"
     CDS             5..>620
                     /locus_tag="U0280_003032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HEM2272931.1"
                     /translation="MKFYIKEIQLTDSNTWKLQGFSEGKINSIQAYYNEIREYKHPEQ
                     KLNIAFTQDKNSFTATISVDELASLSLPNNQTVWKFKVNNDYPYTHLITDGPIINKPF
                     QPENSLYKYHFDFPEGILTLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNA
                     KLIFKRRPTPSFYLFHEQQQSFDLGLITENIVNFSIPTKDLSTAF"
BASE COUNT          227 a          119 c           82 g          192 t
ORIGIN      
        1 aaagatgaaa ttttatatta aggaaattca gctaacagat tctaacacat ggaaattaca
       61 aggcttctca gaaggaaaaa tcaatagtat ccaagcatac tacaacgaaa tccgagaata
      121 taagcaccct gaacaaaagt tgaatattgc ttttactcaa gataaaaatt cattcacagc
      181 tactatttct gttgatgaac ttgctagtct ttctctacca aataaccaga ctgtgtggaa
      241 attcaaagta aataatgatt atccatatac acatttaatc acagatgggc caattataaa
      301 taaacccttc caaccagaga actcgcttta caaataccat tttgattttc ctgaaggtat
      361 tttaacactt gtcagtaaac ctatagaact actagcttcg atagaggagt acaaattaga
      421 ttctgatgtg atgtctggtt ctattaaaat caagtcgcca cttccaagta accaatttaa
      481 tgcaaagcta attttcaaac gtagacctac accaagcttt tatttatttc acgagcaaca
      541 acaatcattt gatttagggc ttattactga aaatatcgtt aatttctcta ttcccaccaa
      601 agatttatct acagctttct
//
LOCUS       DASDXX010000403          618 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.416, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000403 DASDXX010000000
VERSION     DASDXX010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.416"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..138)
                     /locus_tag="U0280_003033"
     CDS             complement(<1..138)
                     /locus_tag="U0280_003033"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272932.1"
                     /translation="MMKMTDPLYGTFEIEPVLAELIQSPLVSRLAHVHQGGASYLVNP
                     LW"
     gene            239..544
                     /locus_tag="U0280_003034"
     CDS             239..544
                     /locus_tag="U0280_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272933.1"
                     /translation="MAEDAIDKMKTNSGSVIIPDETSVVAKIFRDKIDLVANAIGTSI
                     YQIKRDEALQDAEQKAREQPTLAGSVTDSIEVVEEIPLVHHLANAPRLRMKVVGNLV"
BASE COUNT          193 a          122 c          128 g          175 t
ORIGIN      
        1 ccaaagcgga tttactaaat aactcgcgcc accttgatgc acgtgtgcta gccgtgaaac
       61 caatgggctt tggattagtt cagccaaaac aggttctatt tcaaatgttc cgtagagcgg
      121 gtctgtcatt ttcatcatat tcacctcttt tttaattata tattagcgaa caaacgtttt
      181 ccatattttc cctagcaatt ccaattttgc tgagacagtt tataaaaaaa ttactgaaat
      241 ggccgaagat gcgattgata aaatgaaaac caattcgggt agtgtaatta ttccagacga
      301 aacctctgtt gttgcaaaaa ttttccgcga taaaatcgac ctagttgcca acgcaatcgg
      361 cacatctatt taccaaatca agcgggatga agcgctgcaa gatgccgagc aaaaagcgag
      421 agaacaacca accttagccg gctcagtgac tgactcgatt gaagtagtgg aagaaatccc
      481 attggtgcat catctggcta atgcgcccag attgcgcatg aaagttgtgg ggaatttggt
      541 ttaagggaag taaatagtgg agcattccgg tcatttttta taaagtaatc ctacgtgtta
      601 taaaaatacg gtttatac
//
LOCUS       DASDXX010000404          615 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.417, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000404 DASDXX010000000
VERSION     DASDXX010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.417"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..343
                     /locus_tag="U0280_003035"
     CDS             <1..343
                     /locus_tag="U0280_003035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272934.1"
                     /translation="YRGNGFAVIERNGEFQITFPKGVTGEPVFFPITKALMEKAFKSS
                     DDAYEVMIYAETGLWPEKNTEEEENERIRTFVRKFPELLIKVPDNQDLFTEEELKELL
                     PLGKKKLSEEE"
     gene            459..569
                     /locus_tag="U0280_003036"
                     /pseudo
     CDS             459..569
                     /locus_tag="U0280_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724903.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          256 a           64 c          129 g          166 t
ORIGIN      
        1 ttatagagga aatggattcg cagtaataga aagaaatgga gagtttcaaa taactttccc
       61 taaaggagta actggtgaac cagtattttt tcccattaca aaagcgctga tggaaaaagc
      121 gttcaagtca tcagacgatg cctatgaagt aatgatatat gctgaaacag gtttatggcc
      181 agagaaaaat acagaagaag aggagaatga acgaatcaga acatttgtaa gaaaattccc
      241 agagttattg ataaaagttc ctgataatca agatttattt acagaagagg aattgaaaga
      301 attgctgcct ttaggaaaga aaaaattatc agaagaagag taattttata aaataaaaag
      361 atactttatc ttcgggttgg cattggaaag cagagctatg aatagtaaga gcaagctcac
      421 taatcaagtt gccaatagat aacaaggaga taaaatggat gaattttgat ttaatggaat
      481 ataaaaaaat tttagaagaa gatatttatt tattgggtta tcaggaatta agatacgcta
      541 tattcgaagg cgagaaaaat aatcgacaat aatatcaagt tagagttgag aagaatgaag
      601 ataagtttga agttt
//
LOCUS       DASDXX010000405          603 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.419, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000405 DASDXX010000000
VERSION     DASDXX010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.419"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            116..187
                     /locus_tag="U0280_003037"
     tRNA            116..187
                     /locus_tag="U0280_003037"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:149..151,aa:Glu,seq:ttc)
     gene            345..418
                     /locus_tag="U0280_003038"
     tRNA            345..418
                     /locus_tag="U0280_003038"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:379..381,aa:Thr,seq:cgt)
     gene            428..511
                     /locus_tag="U0280_003039"
     tRNA            428..511
                     /locus_tag="U0280_003039"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:462..464,aa:Tyr,seq:gta)
     gene            523..594
                     /locus_tag="U0280_003040"
     tRNA            523..594
                     /locus_tag="U0280_003040"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:555..557,aa:Gln,seq:ttg)
BASE COUNT          173 a          117 c          123 g          190 t
ORIGIN      
        1 aataacccgt tttccaaagt tatattttca gaaaaaaaag aatttaattt gggtatttac
       61 aaatgacatc ctttttttat ataatagttt ctagcggtaa aaaactttat catatggccc
      121 gttggtcaag cggttaagac accgcccttt cacggcggta acacgggttc gaatcccgta
      181 cgggtcactt tttaatcaaa aataacaact tcaaaaatat ttttcacttt ttttaaaaaa
      241 aagctggtaa aattgattaa aatgttatat catgtattag tatctgtttt gaagaattaa
      301 ttatgcaaga gatttcgatt tgccagcagt gagagcgatt cttcgccgac ttagctcaat
      361 ctggtagagc aactgaatcg taatcagtag gttgcgggtt caattcctgc agtcggcatt
      421 ttatagcgga ggggtagcga agtggctaaa cgcggcggac tgtaaatccg ctccttcggg
      481 ttcggtggtt cgaatccact cccctccacc attttctatt attgggctat agccaagcgg
      541 taaggcaacg gattttgatt ccgtcatgcg ctggttcgaa tccagctagc ccagtcatat
      601 tta
//
LOCUS       DASDXX010000406          586 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.421, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000406 DASDXX010000000
VERSION     DASDXX010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.421"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..415
                     /locus_tag="U0280_003041"
     CDS             <1..415
                     /locus_tag="U0280_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272935.1"
                     /translation="YAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINR
                     NLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSVVPMANPVIGSFSGY
                     AIEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK"
     gene            443..>586
                     /locus_tag="U0280_003042"
     CDS             443..>586
                     /locus_tag="U0280_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2272936.1"
                     /translation="MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVS
                     EENI"
BASE COUNT          206 a           86 c          132 g          162 t
ORIGIN      
        1 ctacgctgca gataaagaag gtaatacagt agtggaatat tctgttgaag gtgattatac
       61 cctcgttgta ccagaaaaag taaatttatc taatgataac gccacagaaa tgtctgtgaa
      121 aacaatcaat cgtaacttag aaccaggaaa agaagtagag gtgacattat ctagtggatt
      181 atcagccgat ggagagattg aattacaacg ggttggcgct acttcggacg taataactag
      241 tagttttaaa agtaataata gtgtagtacc catggctaat cctgttatcg gaagcttttc
      301 aggttatgcg atagaggaaa cagaagtaag taaaattcaa attggaaacc ctcaaggaga
      361 caaaaaagct ggagcatatc aaacaacgtt aacttttaca gctgctttta aataagaaat
      421 tacgaaagga gttgtgcatt tcttgaaaag gaaattagtt ctggcaatgg tactaatcag
      481 cttttgtggg atgttcctct tatcgcctga acgagttcaa gctagtcaaa cagtggttga
      541 ggtgttcatt tcagaggatg atttggatgt cagtgaagaa aacata
//
LOCUS       DASDXX010000407          580 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.422, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000407 DASDXX010000000
VERSION     DASDXX010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.422"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            335..>580
                     /locus_tag="U0280_003043"
     CDS             335..>580
                     /locus_tag="U0280_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2272937.1"
                     /translation="MKKIISLLVAFVCLWSILLPGHEADAAAKINSWDLVDSSKHLDY
                     SGNSKYMSFIRSGANTWNAYKKGVIRPASGANKSDVYC"
BASE COUNT          203 a           69 c          120 g          188 t
ORIGIN      
        1 tctaaaacga gtggaaatag gcctttttag gcaaagttat ttcagaaaga gtaagaataa
       61 ttctaaataa gaatgctttt tagtcattca cgacataaaa cagacatttc attacatttt
      121 tggttataca ctctgttttc gtgttacaat ttttttgttc gatgaaaggt aataaaaagc
      181 acagtctact acgggaaaat gatgggtgat tgtatgtttt aaagtgaggt gaatacaaaa
      241 agggagtgag tttgtaagat aatagtttgt tttatgacaa tatgtttgag gctacacttt
      301 attaattatt acatacaaag agggagagcg gagaatgaaa aaaattatat cattattagt
      361 agcatttgta tgtttgtgga gtattttact tccaggacat gaagcagatg cagcggcaaa
      421 aatcaatagc tgggacttag tagattctag taaacaccta gattactcgg ggaattcaaa
      481 gtatatgtca tttattcgat ctggcgctaa tacttggaat gcttataaaa aaggagttat
      541 tagaccagct tcaggagcga ataaatcaga cgtatattgt
//
LOCUS       DASDXX010000408          571 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.424, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000408 DASDXX010000000
VERSION     DASDXX010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.424"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..138)
                     /locus_tag="U0280_003044"
     CDS             complement(<1..138)
                     /locus_tag="U0280_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic lactone autoinducer peptide"
                     /protein_id="HEM2272938.1"
                     /translation="MKNMNKSVGKFLSRKLEEQSMKVADSSMSKACFMFVYEPKSPFV
                     KM"
     gene            complement(122..>571)
                     /locus_tag="U0280_003045"
     CDS             complement(122..>571)
                     /locus_tag="U0280_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory gene regulator B family protein"
                     /protein_id="HEM2272939.1"
                     /translation="LVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLMMFVL
                     APFVFQNIPSNNWIVLGTFGFILLNMFLFAPADTESLPLIGEEHRKTLKRKAMIGTLI
                     LTGIALLIPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE"
BASE COUNT          182 a          109 c           91 g          189 t
ORIGIN      
        1 cattttcaca aatggacttt ttggttcgta tacaaacatg aaacaagctt tactcataga
       61 agaatccgca actttcatgg attgttcttc tagttttcta gaaaggaatt taccaactga
      121 tttattcata tttttcatag ttccgatacc tccttttcaa tagtttgtaa gtaagtggat
      181 taatacttat cacctgaaac aaagatccta ccatgattaa tgttttcatc tctgcgaatg
      241 gtattagcaa cgcaattccc gttaaaatta gcgtccctat catcgctttt ctttttagtg
      301 ttttccggtg ttcttcaccg attaaaggca aactttctgt gtctgccgga gcgaatagaa
      361 acatgttgag cagtataaat ccaaatgtac ctaaaacaat ccaattatta gaggggatat
      421 tttgaaaaac aaatggcgca agcacaaaca tcatcaagct aattaacgtg caattcaatg
      481 ttttggttgc atgtaatcca aaagaatacc gtctgagcca taaatatgac agatgtactg
      541 tcactgtttg cagtaataac cctgttacta a
//
LOCUS       DASDXX010000409          570 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.425, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000409 DASDXX010000000
VERSION     DASDXX010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.425"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..424)
                     /locus_tag="U0280_003046"
     CDS             complement(<1..424)
                     /locus_tag="U0280_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2272940.1"
                     /translation="MKKLSIRVILIVTIIFIACGSANVSIAQERDIINKLPEVELGSL
                     YTSNLITEEVAQDKPAEVENLEQAPTTDDLVQNPDVLEQPIADSDDSDLTVVNSGDFW
                     TIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEI"
BASE COUNT          163 a          118 c           99 g          190 t
ORIGIN      
        1 caatctctat atgtttaatt ctgttcaaat aactattcca agcggttggt ttactacttg
       61 gcacgttacc aaacatatgc aagctatatt caccgttcac agtattacga taaattgtcc
      121 aaaaatcacc tgagtttact actgttaaat ccgaatcatc cgaatcggca ataggctgct
      181 caagaacatc tggattttgc accaaatcat ccgtagttgg ggcttgttct agattctcga
      241 cctctgccgg tttgtcttgc gcgacttctt ctgtaatgag attagaggta taaagagaac
      301 ccagctcaac ctctggaagt ttatttatta tatccctttc ttgtgcgata gaaacattag
      361 cgctcccaca agcaatgaaa ataatggtaa cgattaggat gactcgtatg gaaagcttct
      421 tcatcagctc ccctccttct tccgtaatta gtttctagtt gctaaacatt ctagctgtta
      481 ttttattata gaggagtaag ggggtacctc gagccataaa attttaactt cttaaaattt
      541 tatggcttgc ttagcaaagt tattcataat
//
LOCUS       DASDXX010000410          565 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.426, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000410 DASDXX010000000
VERSION     DASDXX010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.426"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            360..>565
                     /locus_tag="U0280_003047"
     CDS             360..>565
                     /locus_tag="U0280_003047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2272941.1"
                     /translation="MNYTIGAFSREVELSIDTLRYYEKEKLILPKRNEINRRIYDSSD
                     ITWINFIKKLKQTGMPIKDIKEYA"
BASE COUNT          192 a           88 c           90 g          195 t
ORIGIN      
        1 atagcattcg tttaccaagg ttatctgtac ttctaaacta gtaatcttat ccatatatag
       61 gtaaacaggt tcatcacttg aaatttcttt ttgtaataat ttgacttctt tttcatttgg
      121 tgttgcgtag ctgacatatt cagtattaat tgtggtattc tcagagttta gcatgaatta
      181 ataaatttat acgtgccaac cgtttcattg tccaccatga gaagtttaat ctcatccaaa
      241 tttatctctg gcagcttgca aagggactta cgagtattcc aaactatctt tccccgctcc
      301 tttttatgta gtatgctgga gttaacacca tatccattta aaataggaga tgattactcg
      361 tgaattacac aattggtgca ttttcaagag aagtggagtt atcaattgat acattacgat
      421 attatgaaaa agaaaaacta attttaccaa aaagaaatga gattaaccgt agaatttatg
      481 atagttcgga tattacttgg attaacttca taaaaaaatt aaagcagaca ggcatgccaa
      541 ttaaagatat taaggaatat gcaaa
//
LOCUS       DASDXX010000411          557 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.427, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000411 DASDXX010000000
VERSION     DASDXX010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.427"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          188 a           81 c           91 g          197 t
ORIGIN      
        1 ccaattttct cttcagttga aacatcatat aaggattcac aaaataaaga tttaattcaa
       61 gttgtagact tattcgctaa cacagttttt agagtatgta gaaaccacgt atcagcacat
      121 aaaactgata agagaaatag agaacttttg agtttatgta atattggttg tgaccattat
      181 tttccgcgac atatttgtga tctagatatt tgctataaat aaaatgcttg aaatgcttgc
      241 taacttgttt gatttttgtt attcttgatt aagaagttag ataataattc tttgagtgtc
      301 gcataaatga ttagtcaagg ctagtcataa cttgtaagct gcctgttgag gtagtcgcct
      361 taaagttgtc aacttctatt ttttatatat gtcagtccct aacctcgccg ttagggcttt
      421 ttttatgcaa aaaaataccc tgaacaaaga gttcaaggtt gcagtcatat aaaaccgcta
      481 atagttgaat gaaattacta ggtacaaaaa gcacctatta gattattatt acacagattt
      541 attaagagtc aataatt
//
LOCUS       DASDXX010000412          556 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.428, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000412 DASDXX010000000
VERSION     DASDXX010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.428"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            14..319
                     /locus_tag="U0280_003048"
     CDS             14..319
                     /locus_tag="U0280_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2272942.1"
                     /translation="MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVFISEDDLDVS
                     EENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRRSKKKE"
     gene            394..>556
                     /locus_tag="U0280_003049"
     CDS             394..>556
                     /locus_tag="U0280_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272943.1"
                     /translation="MARIEYEEKIQKSLLVLYFRGSTIQSICREYGIPRYEFHKWMKL
                     HDADKLETKE"
BASE COUNT          191 a           86 c          126 g          153 t
ORIGIN      
        1 agttgtgcat ttcttgaaaa ggaaattagt tctggcaatg gtactaatca gcttttgtgg
       61 gatgttcttc ttatcgcctg accgtgttca agctagtcag acagtggttg aggtgttcat
      121 ttcagaggat gatttggatg tcagtgaaga aaacatacag gaaatcccta aaaaagaact
      181 ggcagcctct tcagataagg ataacaaaca acccatatta cctaaagcag gtgatacagt
      241 aactaactat accttgttgg gtttagtgct cgtccttatt tggttgataa tgcaaagaag
      301 gagtaagaag aaagaataac ccctatgaca gcatcgtaat gtagcaagta aaaaaggaaa
      361 gaaaatttct gtattagata ggaagtgata ggtatggctc gaatcgaata tgaagaaaaa
      421 attcaaaaaa gcctactggt tttatacttt agggggtcta ccatacagtc tatctgcagg
      481 gagtatggta ttcctcgtta cgaatttcac aaatggatga agttacatga tgccgataaa
      541 ctggaaacca aagagg
//
LOCUS       DASDXX010000413          534 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.430, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000413 DASDXX010000000
VERSION     DASDXX010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.430"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(85..160)
                     /locus_tag="U0280_003050"
     tRNA            complement(85..160)
                     /locus_tag="U0280_003050"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(125..127),aa:Ala,seq:tgc)
     gene            complement(179..252)
                     /locus_tag="U0280_003051"
     tRNA            complement(179..252)
                     /locus_tag="U0280_003051"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(216..218),aa:Pro,seq:tgg)
     gene            complement(263..336)
                     /locus_tag="U0280_003052"
     tRNA            complement(263..336)
                     /locus_tag="U0280_003052"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(300..302),aa:Arg,seq:acg)
     gene            complement(349..434)
                     /locus_tag="U0280_003053"
     tRNA            complement(349..434)
                     /locus_tag="U0280_003053"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(398..400),aa:Leu,seq:taa)
     gene            complement(456..527)
                     /locus_tag="U0280_003054"
     tRNA            complement(456..527)
                     /locus_tag="U0280_003054"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(493..495),aa:Gly,seq:gcc)
BASE COUNT          143 a          145 c          112 g          134 t
ORIGIN      
        1 tttttcttct tcgttgcctt tagcagcaac tcttatatct tactctattc tctaaacaat
       61 gtcaacacat ttttagaaat aatttggtgg agcctagcgg gatcgaaccg ctgacctcct
      121 gcgtgcaaag caggcgctct cccagctgag ctaaggcccc ataataaaaa tcaaacaatc
      181 gggaagacag gattcgaacc tgcgacccct tggtcccaaa ccaagtgctc taccaagctg
      241 agctacttcc cgtttaataa agtgcgccca agaggagtcg aacctctaac cgcttgattc
      301 gtagtcaagt actctatcca gttgagctat gggcgcatat aaaaataatg ccgaggaccg
      361 gaatcgaacc ggtacggata tcactatccg caggatttta agtcctgtgc gtctgccagt
      421 tccgccaccc cggcatattg gaacttttgt aaacaagcgg aagacggggt tcgaacccgc
      481 gacccccacc ttggcaaggt gatgttctac cactgaacta cttccgcata ttta
//
LOCUS       DASDXX010000414          532 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.431, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000414 DASDXX010000000
VERSION     DASDXX010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.431"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..510)
                     /locus_tag="U0280_003055"
     CDS             complement(<1..510)
                     /locus_tag="U0280_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class III"
                     /protein_id="HEM2272944.1"
                     /translation="MKTIDMKYLRLLAKEYPTIAKTATEIINLEAIMNLPKGTEHFLS
                     DVHGEYSAFEQVLRNGSGVVKRKIRDIFGAELDDAEINSLSTLIYYPEEKMDLLASET
                     EDLQAWYRTTLFRLIELCQYVASKYTRSKVRKAMPEDFAYILEELLHENYNEDDKKLY
                     YEEILQHIIS"
BASE COUNT          160 a          106 c           84 g          182 t
ORIGIN      
        1 tgaaataata tgttgtaaaa tttcttcata ataaagcttt ttgtcgtctt cattgtagtt
       61 ttcatgaagt aactcttcta atatgtaggc aaaatcttcg ggcatggctt ttctcacttt
      121 agaacgtgtg tattttgaag caacgtactg gcagagttca atcaaacgaa aaagtgtggt
      181 gcgataccaa gcctgcaaat cttctgtttc actagcaagc aaatccatct tttcttctgg
      241 ataataaatc agtgtactaa gtgaattaat ctctgcatca tctagctccg cgccaaaaat
      301 atcacgaatt ttccgtttta caacaccaga accattacga agcacttgtt caaaagcact
      361 atattcaccg tgaacatcac ttaaaaaatg ttccgttcct tttggaaggt tcataattgc
      421 ttcgagatta atgatttccg tagctgtctt ggcaatagta ggatattctt ttgctaacaa
      481 gcgtaaatat ttcatatcaa tagttttcac cagtccagta cctccttttt ca
//
LOCUS       DASDXX010000415          521 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.432, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000415 DASDXX010000000
VERSION     DASDXX010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.432"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(183..>521)
                     /locus_tag="U0280_003056"
     CDS             complement(183..>521)
                     /locus_tag="U0280_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272945.1"
                     /translation="TNNLLALAKKDSSTNIIAVTPKGEETVVKRGLLKGAGVNRVTYH
                     WNYARIRLSKNTVRTMGAGLSIAGIWLPLKVVSKVCASLGVGTGFVKHGIWFDYNYFS
                     NLLLTGYGWQ"
BASE COUNT          179 a          107 c           67 g          168 t
ORIGIN      
        1 ttatgatttt tttatcaata ataaagaaaa ttatttcttg aataacaaag tacaaaaata
       61 tgaaaagtat gacaatttta gtatcccata taaaaaaact gggtatcgct ataattgtta
      121 caataagcgc tctgatataa aaccaacgtg ttcctcgcat ttagaattcc tccaagttaa
      181 agttactgcc acccatagcc agtaagaagt aggttagaaa aataattata atcaaaccaa
      241 attccgtgtt taacaaaacc tgtacctaca cccaaagaag cacaaacttt tgatactact
      301 ttcagcggca accagatccc agctatactt aaacccgcac ccattgttct tactgtattt
      361 tttgacaatc ttatacgagc gtaattccag tggtatgtaa ctctattcac tcctgctcct
      421 tttaacaaac ctcttttaac cactgtctcc tcacctttag gagttacagc aattatattg
      481 gtacttgagt cctttttagc taaagcaagt agattatttg t
//
LOCUS       DASDXX010000416          520 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.433, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000416 DASDXX010000000
VERSION     DASDXX010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.433"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            146..>520
                     /locus_tag="U0280_003057"
     CDS             146..>520
                     /locus_tag="U0280_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2272946.1"
                     /translation="MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEV
                     AYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPST
                     NKYYAGLIDYSVADNAYVTQKDV"
BASE COUNT          196 a           83 c           85 g          156 t
ORIGIN      
        1 ttaaatatat aaaagactat tttgcttagc gcagagtagt cttttttcta caaatcagcc
       61 ctatcctcag aaaaataatg tataatgatt cataaactgg tacaatataa aatagtaaag
      121 caattcatga caaaggatga aaataatgca acaactaaaa tcaaaaaaga aatggctgcc
      181 cgctctaatc gtcgcagttt tcgtaggaat tatcgtaatc ttagcaatta tgtttggctt
      241 ttttcagcgc caagaagtgt ttgataagta tgaagtagct tacgaaatag acggcaaatt
      301 atatgaagtc ttcccaatta gtgcgacaga tattggcgta gataaaaaat ccaaagataa
      361 aaatctctat ttccgcgtga atagttacta caatattgat tacttattcc gactagctta
      421 taaacaatat gaaattaatg aaccatctac caataaatat tacgcaggtt tgattgacta
      481 cagcgtggcc gataatgctt atgttacaca aaaagatgtg
//
LOCUS       DASDXX010000417          513 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.434, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000417 DASDXX010000000
VERSION     DASDXX010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.434"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>513
                     /locus_tag="U0280_003058"
     CDS             <1..>513
                     /locus_tag="U0280_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272947.1"
                     /translation="SPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELS
                     ERNLYISTGNQVEIMGDEFSLRIFYTFLFLVAYSGDRWPFSFVRYDEITDLLESCPKE
                     IYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKK
                     VAKQLPNRNYK"
BASE COUNT          180 a           77 c           99 g          157 t
ORIGIN      
        1 tcgcccaaat ttcaaattct cgaaacttta ttgctggctt ccttccctaa tctacaagca
       61 ttggcaaaaa aagtacatgt ttcttattct gggataaaga aagaaataaa agaattgaat
      121 gaagagctaa gtgaacggaa cttgtatatt tctacaggaa atcaggtaga aataatgggg
      181 gatgaatttt cattaagaat attctatacc ttcctttttt tagtcgcata tagcggggat
      241 cgttggccat tttcttttgt tcgatatgat gaaatcactg acttattaga gagttgtcca
      301 aaagaaattt atagagcaaa ctcgatagat aaggcgatga tgattcatta ttatgtcgct
      361 atgcatttat taagagatcg aatgaattgt caaattgata caactaggca gtttaaagtg
      421 gccctatata aggcttgcac cgaggagtct aagaaatcag aaagtgcgtt cattaaaaag
      481 gtagcgaaac aacttcctaa taggaactat aaa
//
LOCUS       DASDXX010000418          504 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.435, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000418 DASDXX010000000
VERSION     DASDXX010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.435"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..383
                     /locus_tag="U0280_003059"
     CDS             <1..383
                     /locus_tag="U0280_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2272948.1"
                     /translation="QEEMAKILGVAKTTYASYEQAKRMPDAEIQNKIANYFDVSLDYL
                     HGRSRHKNINAEGFTPKEEIDMKKRMDALREDLKNGDGLLYDGEPITTEAMESILDAM
                     EFAEKQATRINRKYAPKDKKNNIE"
     gene            400..>504
                     /locus_tag="U0280_003060"
     CDS             400..>504
                     /locus_tag="U0280_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM2272949.1"
                     /translation="MWPTAMIEKLRNKHHTSDPFELCEILNIIVTPWDL"
BASE COUNT          202 a           77 c           99 g          126 t
ORIGIN      
        1 cacaagaaga aatggctaaa atattgggcg ttgcaaaaac tacttatgct tcatacgaac
       61 aagccaaaag aatgcccgat gctgaaattc agaataaaat agctaactat tttgatgtaa
      121 gtctggacta tttacatggc agaagtcgcc ataaaaatat aaatgcagaa ggtttcactc
      181 ccaaagaaga aatagatatg aaaaaaagaa tggatgctct tagagaagat ttgaaaaacg
      241 gggacggatt actttatgat ggtgagccga ttacaaccga agccatggaa agtattttag
      301 atgcaatgga attcgctgaa aaacaagcaa ctcgtatcaa tagaaagtac gcgcctaaag
      361 acaaaaaaaa taatatagag taaatcgggg gtattctata tgtggccaac tgcaatgatt
      421 gaaaaactta gaaataaaca tcacacatct gatccatttg aattatgcga aatactaaat
      481 attattgtta cgccttggga tttg
//
LOCUS       DASDXX010000419          497 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.436, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000419 DASDXX010000000
VERSION     DASDXX010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.436"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>497
                     /locus_tag="U0280_003061"
     CDS             <1..>497
                     /locus_tag="U0280_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HEM2272950.1"
                     /translation="KAVIPAAGLGTRFLPATKAMPKEILPIVDKPTIQYIVEEAVASG
                     IEDILIVTGKGKRAIEDHFDSVPELENNLREKNKLELLHLVEQTTNINLHFIRQAKPK
                     GLGDAILQAKGFVGNEPFIVMLGDDIVESKIPCSKQLMNQYEKTHSSVIGVQTVPHEE
                     TYRYG"
BASE COUNT          177 a           93 c           89 g          138 t
ORIGIN      
        1 aaaaagctgt aattccagct gctggtctag gcacgcgctt tttaccagca acaaaagcaa
       61 tgcctaaaga aatcttacca attgtggata aaccaactat tcaatacata gtagaagaag
      121 cagtagcatc tggcatagaa gatattttaa ttgtaaccgg taaaggtaaa cgtgctatcg
      181 aagaccattt tgattccgtt cctgaacttg aaaacaatct acgggaaaaa aataaacttg
      241 aattactaca tttagtagaa caaactacta acattaattt gcactttatt cgtcaagcga
      301 aaccaaaagg acttggtgat gccatccttc aagcaaaagg ctttgtgggt aatgaaccat
      361 ttatcgttat gttaggtgat gatattgttg aatccaaaat cccttgttcc aaacaattaa
      421 tgaatcaata tgaaaagacg catagttccg tcattggagt ccaaactgtc cctcacgaag
      481 agacatatcg ttatggt
//
LOCUS       DASDXX010000420          490 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.438, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000420 DASDXX010000000
VERSION     DASDXX010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.438"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            22..>490
                     /locus_tag="U0280_003062"
     CDS             22..>490
                     /locus_tag="U0280_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007543617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2272951.1"
                     /translation="MLFLLSFVIFNDDLKKEFSFVKGILPGIFSGIVLYIIFYIGAFI
                     IKVMPGGLENSVEAAFNKYSTHSLIIWLLLIVAIIPGEEIFWRGFVLKRLNHYFNPWF
                     SNVFAALLCMVMMFPSGNFAAIIGIFVASLVWNIMYSYRPSLLMLYLSHLTFAF"
BASE COUNT          118 a           82 c           94 g          196 t
ORIGIN      
        1 tggtatttat atggagctgg gatgttattt ttacttagtt ttgtgatttt taatgatgat
       61 ttaaaaaaag agttttcgtt cgttaaaggc attttgccag gtattttttc cggaattgtc
      121 ctttatatta ttttttacat aggcgctttt attattaaag taatgccagg cggtctagaa
      181 aattctgtag aagctgcttt taataagtat tcgacgcatt ctttgataat ttggctactg
      241 cttatcgtgg ccattatccc tggagaagaa attttctggc gcggcttcgt attaaaacga
      301 ttaaaccatt atttcaatcc ttggttttcg aatgtttttg cagcgttact atgtatggta
      361 atgatgttcc caagtggcaa ctttgcagcg attatcggta tctttgtcgc ttcgctcgta
      421 tggaatatca tgtactccta tcgcccaagc ctactcatgc tatatttatc gcatctaacc
      481 tttgcgtttt
//
LOCUS       DASDXX010000421          477 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.439, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000421 DASDXX010000000
VERSION     DASDXX010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.439"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..252
                     /locus_tag="U0280_003063"
     CDS             <1..252
                     /locus_tag="U0280_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM2272952.1"
                     /translation="KCKEWLSLRQEALKRDNYECQRCKKKGKQRQADCVHHIKYVKEF
                     PAFALTLSNLECLCNQCHNEEHERLPNQQEKKIINQERW"
BASE COUNT          173 a           61 c          109 g          134 t
ORIGIN      
        1 aaatgcaaag agtggttgtc tctcaggcaa gaggcattga agcgtgataa ctatgaatgc
       61 caacgatgca agaagaaagg taagcaacgt caagcggact gtgtacatca tattaaatat
      121 gtaaaagagt ttcccgcttt tgcgttaaca ttaagtaatc tcgaatgttt atgtaatcaa
      181 tgtcataacg aagagcatga gcgtttgcct aatcaacaag agaagaagat tattaatcaa
      241 gaaagatggt gatgtgattg ttatttgata ttgatggaat tgagtacaac acagatgact
      301 atgaacaata tgatatgtat aagcaaagtg tagtgcgcaa tgtgatgtat aaagcatatc
      361 gttcgctgcg gtctgttgtg tctgataaca agtgtcaagg tttgaagcaa aaagaagtga
      421 aagaaaaaat aaataataat aggtcgcaag tgtatcagtt gctttcattt actgatg
//
LOCUS       DASDXX010000422          476 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.441, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000422 DASDXX010000000
VERSION     DASDXX010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.441"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>476
                     /gene="prfA"
                     /locus_tag="U0280_003064"
     CDS             <1..>476
                     /gene="prfA"
                     /locus_tag="U0280_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="listeriolysin O transcriptional regulator PrfA"
                     /protein_id="HEM2272953.1"
                     /translation="GITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEV
                     ISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICG
                     QLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY"
BASE COUNT          162 a           85 c           86 g          143 t
ORIGIN      
        1 tggtattaca aagcttacaa gtattagtga gaacgggacc atcatgaatt tacaatacta
       61 taaaggtgct ttcgttataa tgtctggctt tatcgataca gaaacatcgg ttggctatta
      121 taatttagaa gtcattagcg aacaggctac cgcatacgtt atcaaaataa acgaactaaa
      181 agaactactg agcaagaatc ttacgcactt tttctatgtt ttccaaaccc tacaaaaaca
      241 agtttcatac agcctagcca aatttaatga tttttcgatt aacgggaagc tcggctctat
      301 ttgcggtcaa cttttaatcc tgacctatgt gtatggtaaa gaaactcctg atggcatcaa
      361 gattacactg gataatttaa caatgcagga gttaggctat tcaagcggta tcgcacatag
      421 ctcagctgtt agcagaatta tttctaaatt aaagcaagag aaagttatcg tgtata
//
LOCUS       DASDXX010000423          458 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.443, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000423 DASDXX010000000
VERSION     DASDXX010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.443"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>458
                     /locus_tag="U0280_003065"
     CDS             <1..>458
                     /locus_tag="U0280_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2272954.1"
                     /translation="GSGKTRVACELINDVNPDYVLWITPFQTKENLEIEISKWGYSFP
                     QEIIGIESLSNSDRLYLYCRNKLKNSTNSYIIMDESLKIKNIHALRTQRAIKLSRLAT
                     YKLIMNGTPLSRNILDLWSQLEFLSPKILNLSFSQFKKTFCEYVTITQLT"
BASE COUNT          165 a           90 c           67 g          136 t
ORIGIN      
        1 ggaagtggga aaacacgggt agcttgcgag ttaataaatg atgtaaaccc agattatgtt
       61 ttatggatta ccccttttca aactaaagaa aatctcgaaa ttgaaataag caaatggggt
      121 tattcattcc ctcaagaaat tatcggcatt gagtctctct ccaactcaga tagattatac
      181 ctgtattgcc gaaacaaact caaaaattcc accaatagtt acattattat ggatgaaagc
      241 ctaaagataa aaaatatcca tgcacttcga acacaacgag cgattaaact ttctcgtctg
      301 gctacctata aattaattat gaacggcaca cctcttagtc gtaatatttt ggatttatgg
      361 tcacagctag aatttctatc tcctaaaata ttaaatctaa gtttttccca gttcaaaaaa
      421 actttttgcg aatacgtcac cattacacaa ctaacaca
//
LOCUS       DASDXX010000424          448 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.444, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000424 DASDXX010000000
VERSION     DASDXX010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.444"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(320..>448)
                     /locus_tag="U0280_003066"
     CDS             complement(320..>448)
                     /locus_tag="U0280_003066"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2272955.1"
                     /translation="LENRSNIKLPATGDDNATVLLVGFGLLMLGLFIRLTQKKRAK"
BASE COUNT          137 a           82 c           71 g          158 t
ORIGIN      
        1 aatagttaga tagttcgagt cagtactaaa tcgtccggaa aatgtgtcta tttttgggtt
       61 tcacttatta aatcgcagag gaagttctat tattagacta tccttcgtct ttgagggaat
      121 aataggcaaa aaaaactatc accccttttc ataaagttaa aagttgtttt gggacatgtt
      181 actcgttttt tctgctatct tttagtactc cagtatcaaa aaaagaggag acagctctct
      241 gtctcctctc cttgtgagtt gcaactattt atctcctaga agcaaccaat tacactattt
      301 tttaaatttc tatgagcttt tatttagcac gctttttttg agtaaggcga atgaaaagcc
      361 ccaacattag taatccaaag cccactaata aaacagttgc attatcatcg cctgtagctg
      421 gtaatttaat attagatcta ttttccaa
//
LOCUS       DASDXX010000425          444 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.445, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000425 DASDXX010000000
VERSION     DASDXX010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.445"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            121..>444
                     /locus_tag="U0280_003067"
     CDS             121..>444
                     /locus_tag="U0280_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M4"
                     /protein_id="HEM2272956.1"
                     /translation="MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPAD
                     LKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSDGYLTDNDEIKVHVTPDNKI
                     AFINGD"
BASE COUNT          152 a           74 c           87 g          131 t
ORIGIN      
        1 ctactgcaaa acgtataatt tagttcccac atatgctaaa aaacgtgtcc ttaactctct
       61 ctgtcagatt agttgtaggt ggcttaaact tacttttacg aattgaaaag gagcggtgaa
      121 atgaagagta aacttatttg tatcatcatg gtaatagctt ttcaggctca tttcaatatg
      181 gcggtaaaag cggattctgt cggggaagaa aggctccgaa ataatataca agccaaaagg
      241 aaccctgctg atttaaaagc tttgccagat tcctgcgaag caaaagattt ttataaaaat
      301 tttaaaattc ttgatatgac aaaagataag ctaggcgtta cgcattatac gctcgcgcta
      361 agttctgatg gttacttgac tgataatgat gaaataaagg tccacgtcac accggataat
      421 aaaatcgctt ttataaatgg agat
//
LOCUS       DASDXX010000426          435 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.447, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000426 DASDXX010000000
VERSION     DASDXX010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.447"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            18..>435
                     /locus_tag="U0280_003068"
     CDS             18..>435
                     /locus_tag="U0280_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HEM2272957.1"
                     /translation="MSKQNVPSYGGQAVVEGVMFGGRKQTVTAIRRIDGSLEYFYLEK
                     NSPVWVMRMKKIPFLRGIVALIESSAIGSKHLAFATDRYDEDPNNPVEEEKIEKKESK
                     VAMWLGVAVIGILSFVFAKFVMTLIPVFLAELFRPIV"
BASE COUNT          136 a           73 c           95 g          131 t
ORIGIN      
        1 ataggctggt gaaaactttg agcaaacaaa acgtgccatc atatggcggt caagctgtag
       61 ttgaaggcgt catgtttggc ggcagaaaac agaccgtaac agcaattaga cgtatagatg
      121 gttcattaga atatttttat ttagaaaaaa atagtccggt ttgggttatg cgtatgaaga
      181 aaatcccttt tttaagagga attgttgcat taattgaatc tagcgctatc ggttccaaac
      241 acctcgcttt tgcaacagac cgatatgatg aagatccaaa taatccagta gaagaagaaa
      301 aaattgaaaa gaaagaatcg aaagtcgcga tgtggcttgg tgttgctgtc atcggtattt
      361 tatctttcgt ctttgcaaaa tttgtcatga cgctcatccc tgtattttta gcggaattat
      421 tccgtcctat cgtac
//
LOCUS       DASDXX010000427          433 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.448, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000427 DASDXX010000000
VERSION     DASDXX010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.448"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            22..378
                     /locus_tag="U0280_003069"
     CDS             22..378
                     /locus_tag="U0280_003069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2272958.1"
                     /translation="MTLNAKSITIGLPVSDLEKSASWYEKLLMSDEKLVPVEGVIEYQ
                     IGSVWIQLFEEKINASKNVLCLEAENLEVEFERLKTLGIITNEVIEELSGILRYFDFT
                     DPDGNKLSFYWLYEQE"
BASE COUNT          158 a           54 c           96 g          125 t
ORIGIN      
        1 aatgaaaagg aggaaaaagt tatgacttta aatgcaaaga gtatcactat agggctgcca
       61 gtaagtgatt tggagaaatc tgcaagctgg tatgaaaaac tgcttatgag tgatgaaaaa
      121 ctagtaccgg ttgaaggggt tattgaatat caaattggtt cggtttggat tcaacttttt
      181 gaagaaaaaa tcaatgcttc taagaacgtt ttgtgcttag aggcagaaaa tctagaagta
      241 gaatttgaac gtttaaaaac acttgggata ataactaacg aggtgataga agagctatca
      301 ggtatccttc gatattttga cttcactgat ccagatggta ataagttatc attctattgg
      361 ttatacgaac aagaatagac ttaaacagca ttatatgatg agcgtaacgc taaaacgacg
      421 gataattgat tcg
//
LOCUS       DASDXX010000428          432 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.449, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000428 DASDXX010000000
VERSION     DASDXX010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.449"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(57..>432)
                     /locus_tag="U0280_003070"
     CDS             complement(57..>432)
                     /locus_tag="U0280_003070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2272959.1"
                     /translation="EFDKEDIICSIIGMQEGWLYLYLNNRNHENVLIEKCNLMRGNGE
                     NRLKESLEQLGRYFGNEKEGVLRIPKCFTKKIIANYSNLSVRSVTHLCRKLVESGFLA
                     ENSKSFVLLDKYGRIEPEVTTI"
BASE COUNT          149 a           87 c           46 g          150 t
ORIGIN      
        1 ccctaagaaa aaagataaac taaaaattaa atagtttatc ttttactcaa gtataattat
       61 atcgtagtta cttctggttc tattcttccg tatttatcca acaaaacaaa agacttagaa
      121 ttttctgcta aaaaacctga ttcaaccaac tttctacaaa gatgagttac tgaacgcacc
      181 gataagttag aataattagc aataattttc tttgtgaaac attttggaat gcgtagcacg
      241 ccttcctttt catttccaaa atatcttccc agctgctcta gagactcttt caaacgattt
      301 tctccattac cacgcattaa attacatttt tcaattaaaa cattttcgtg atttcgatta
      361 ttaagatata aatagagcca cccctcttgc atcccaataa tcgagcaaat tatatcttct
      421 ttatcaaatt cg
//
LOCUS       DASDXX010000429          420 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.451, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000429 DASDXX010000000
VERSION     DASDXX010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.451"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..63
                     /locus_tag="U0280_003071"
     CDS             <1..63
                     /locus_tag="U0280_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2272960.1"
                     /translation="LGLVLVLIWLIMQRKRKKKE"
     gene            139..405
                     /locus_tag="U0280_003072"
     CDS             139..405
                     /locus_tag="U0280_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2272961.1"
                     /translation="MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKL
                     HDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP"
BASE COUNT          159 a           56 c           92 g          113 t
ORIGIN      
        1 ttgggtttag tgctcgtcct tatttggttg ataatgcaaa gaaaaaggaa gaagaaggaa
       61 taaccccctg tgacatcatc ataatgtagt aagtaaaaag gatataaaaa tttctgtgtt
      121 agataggaag tgacaggtat ggctcgaatc gaatatggag aagaaattca aaaaagccta
      181 ctggttttat actctagggg gtctaccata gactctatct gcaaggagta tggtatccct
      241 cgttacgaat ttcacaaatg gatgaagtta catgatgccg ataaactgga aaccaaagag
      301 gtgaagactt tcctacagat aagagaatta aaacagcaaa aaaacaaatt agaagaagaa
      361 attttgtttt taaatgaagc aatcaatctg ttggaaagtc cttgagaggg atgattttaa
//
LOCUS       DASDXX010000430          410 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.452, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000430 DASDXX010000000
VERSION     DASDXX010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.452"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          127 a           81 c           67 g          135 t
ORIGIN      
        1 atagttcggt agaggcgcac attggcgccg tattactata agtgacaata ataaaaatgt
       61 attgactaac taattgtatt ttctcaataa actcgcaaac catacgagat gcggcaaaat
      121 tataacaagg aaaaataatt caaaaaataa aagcgcaata cgaggaattc taattccatc
      181 atattacgct ttttacatta tctgtttgtt agctgtcact atcaataagt tcatatactt
      241 tcttatgagc caccaccaaa ggatgggtgt ttctgttagt cttattccgc cacaattgct
      301 tttgtcaaat cgtccacgaa atcttgttta ttttctgctt tcgatgcttc ggaaattgca
      361 tcaatatctt tcggtttatc atcccagcgg ccagaatctg ctgttacggc
//
LOCUS       DASDXX010000431          406 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.453, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000431 DASDXX010000000
VERSION     DASDXX010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.453"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          129 a           81 c           48 g          148 t
ORIGIN      
        1 aaagcttgtt aaattagctt ttttaaacta ctaacctaaa gcgttcgccc ttacatagaa
       61 aacgttttag atcaaaaaaa gcatgattgc tcttggacct aaaacgtttt gttatatttg
      121 ctcctgtata gctattttga aaaaagcttc actaatttgc cataatcatc gctgtggatt
      181 ttttgttgtc cggcataggt gaaataaaaa ttttcctttt gaattcctaa atttcaccta
      241 ataccgacat tttattactt cttagtttgc tcccacatgc aaactactcc gttaataaaa
      301 caacaagttt tatagactct atcccttatc gaatctataa attttctcta cacattccct
      361 tttaaaacct gtctacgcaa aaacggaaac gtagattttc atttta
//
LOCUS       DASDXX010000432          396 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.455, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000432 DASDXX010000000
VERSION     DASDXX010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.455"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            20..>396
                     /locus_tag="U0280_003073"
     rRNA            20..>396
                     /locus_tag="U0280_003073"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          128 a           74 c          115 g           79 t
ORIGIN      
        1 tacttcgtag aagtaaattg gttaagttag aaagggcgca cggtggatgc cttggcacta
       61 ggagccgaag aaggacggga ctaacaccga tatgctttgg ggagctgtac gtaagcgttg
      121 atccagagat ttccgaatgg gggaacccac tatctttagt cggatagtat ccttacgtga
      181 atacatagcg tgaggaaggc agacccaggg aactgaaaca tctaagtacc tggaggaaga
      241 gaaagaaaaa tcgatttcct gagtagcggc gagcgaaacg gaaagagccc aaaccaagaa
      301 gcttgcttct tggggttgta ggacactcta tacggagtta caaaagaaag ttataaatga
      361 agcggtctgg aaaggcccgc caaagacggt aacagc
//
LOCUS       DASDXX010000433          379 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.denovo.456, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000433 DASDXX010000000
VERSION     DASDXX010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.denovo.456"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(60..>379)
                     /locus_tag="U0280_003074"
     CDS             complement(60..>379)
                     /locus_tag="U0280_003074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rgg family transcriptional regulator"
                     /protein_id="HEM2272962.1"
                     /translation="RGKKVFSTLLSNIIEELITRNQLEYAAQLLEILHELSSTHDCAF
                     YRIMHNYYQGLIWMKNDQVEQGLKESKSAIRILDVLDYKSLAQLYNTLLQQFLEKENI
                     QIV"
BASE COUNT          117 a           61 c           66 g          135 t
ORIGIN      
        1 catttggtct tatatataag accaaaaaaa gataccctat tacgggtacc tgctttactt
       61 taaactattt ggatattctc tttttctaaa aactgttgaa gtaatgtatt ataaagttgt
      121 gcaagggatt tgtaatccag tacatctaaa attcgaatgg cacttttaga ctcttttaag
      181 ccttgttcga cctggtcatt tttcatccag attaagcctt gatagtaatt atgcataatc
      241 cggtaaaaag cacagtcatg cgtagaagac agttcgtgca gtatttctaa taattgcgcg
      301 gcatattcta attgattacg ggtaattagt tcttcaatta tattggatag aagcgtggaa
      361 aatacttttt tgccacgat
//
LOCUS       DASDXX010000434         3777 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.guided.216, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000434 DASDXX010000000
VERSION     DASDXX010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3777
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.guided.216"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1793
                     /locus_tag="U0280_003075"
     CDS             <1..1793
                     /locus_tag="U0280_003075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2272963.1"
                     /translation="NNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL
                     LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGK
                     ERAKRKYMISLLYEEGGYRESIKSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSM
                     MNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKILSEEYQIHFSEAET
                     KQLGLLYVGLQNEQSANANHGELDQFVDKKIIEALKSVLANVEETYLIDLQNEQLFIK
                     LAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEIS
                     FIALHIGSFLESENRDYIRLEIGLLIEDYHDLRTNMLKKLRARFENEATIKLIENEDS
                     EENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLRGQQIDR
                     YIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGI
                     AIPHSIKNDALQSGVSIMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIV
                     SEPINTKRLSMAESFEEFIQKLKMMMEESE"
     gene            2086..3657
                     /gene="abc-f"
                     /locus_tag="U0280_003076"
     CDS             2086..3657
                     /gene="abc-f"
                     /locus_tag="U0280_003076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HEM2272964.1"
                     /translation="MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTT
                     LMEVIAGAKEATSGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKAIQHAMRQNPSVLLA
                     DEPTSNLDVESVKHLERQWSDFHGALIIISHDRTFLDALCTEIWEIKNQKIHVYKGNY
                     HAYLEQKQQQENQAELVYKEFKNKKQQLQASQTHHEIEAGRIVKPGKRLNNKEASAFK
                     AGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKMITPDNRVIKKGNTILSVKET
                     TYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYF
                     DQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLL
                     LSMLLVSDANFLILDEPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLL
                     VIENNEMTFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAML
                     EQDYQEIITKRQQFS"
BASE COUNT         1456 a          740 c          657 g          924 t
ORIGIN      
        1 gcaacaacat ttctaaaata aatgaagcga caccgaattt aattcgttct gcaaaacaag
       61 gctatcaaat caaccagcgt attccatttg aacttcagac agaaagtgat gtaacagaac
      121 gaaagtcaaa actcttactc gaattaatta aaaactctac taaaggcgtt gacctgtttg
      181 aacttgcgga tattttatat atttcagaag taaccttaaa aaaagacatc caacaattaa
      241 aaaacgaact aaaagaagcc gatgtccaaa tcgtcaccag taaagaccga atcaaattaa
      301 tcggaaaaga acgtgccaaa cgaaaatata tgatttcctt gctatatgaa gaaggcggat
      361 accgtgaaag tatcaaaagt cgcattcaag aaatgattga atttgtttct atcgataaac
      421 tgcaaaacat cgtaaaagaa gttttaacgg aagaatccat tacaaccaat caatattcga
      481 tgatgaacat tgtcttacat tacgccatta gcatcgtccg aattcaacaa ggaaatacac
      541 tcattgaaac ccaaaaaaca ctcatccgaa aacactccaa agaatacgaa atatcgaaaa
      601 aaattgctaa aattctctcg gaagaatacc aaatccattt ttcagaggca gagacaaaac
      661 aactcggact tttatatgtt ggcttgcaaa atgaacaatc tgctaatgcc aatcatggcg
      721 aactggacca atttgtcgat aaaaaaatca tcgaagcact taaaagcgtg ctcgccaatg
      781 tggaagaaac ctatctcatc gatctccaaa atgagcaact ttttatcaag ctagcgattc
      841 acgtccaaag cctatactat cgctcacgtt acaaagcgta caccagaaat ttaagcttac
      901 ttgatattaa aacgtcttac ccagtaactt ttgatattgc tgtttacatt tcttctttgc
      961 tacaagaaaa actagcgatt gactttaacg aagatgaaat ttcttttatc gcgctgcata
     1021 tcggctcttt tctagaaagt gaaaaccgag attatattcg cttagaaata ggcctactta
     1081 ttgaggatta tcacgattta agaacaaata tgctgaaaaa actgcgcgca cgatttgaaa
     1141 atgaagctac catcaaactg atagaaaacg aggactctga agaaaatttt gatatcattt
     1201 taacaacaaa ccgagatatt gctcttgaaa aagcgggttc catttttatt catcccttac
     1261 taacgacgaa ggatatcaag aaaatcagca atcgaatcca aacaaagaaa aaaatcttgg
     1321 aaaatcactt gcgaggtcaa caaattgatc gctacatcgt tcgttccctc tacgccaacc
     1381 aaattgaccc ctcagaactg acacccgcaa aaatcagaga gcaaatgatt tctaaaatgg
     1441 aaaaacaaac cttcgtcacg ccggaattta aagaaaaagt cgaaaaaagg gaacgaatgg
     1501 cgccaacaag cttcccatcc ggcattgcta taccacattc tatcaagaat gatgcccttc
     1561 aaagtggtgt atctataatg acgctacaag agccgattta ttggaatgac gtcaaaataa
     1621 aaataattgc tctcgtcgcc atcagcaaaa aagatgcaac agagttcaat gatttttttg
     1681 aaaagtttgt agaaatcgtc tccgaaccga ttaatactaa acgtttatca atggccgaaa
     1741 gtttcgagga gttcatccaa aaactaaaaa tgatgatgga agaaagtgag taaatggcca
     1801 cacataagcc gtgtaattct atttacacgg cttataaagg ttgaagtgac gataaaatta
     1861 cgctataata taaccatcaa acgaaaagga gtgttatctt aagccaatga aattctaatc
     1921 ctgtattata tgaaaaaatg aagaaagcta tccaattctc ggatagaaac tattttttcg
     1981 gacgggattc gtatgttcat ttcgcatgat aactctttgc tacaggcctt tttttggcgt
     2041 agcctcgcgg attcctctct gaaaatattc aggaggttat tttttatgtc tacaatcgaa
     2101 ataaatcaat taaaaataga agtagcagat agagttttag tagaaattcc tcatctgcta
     2161 gttagtaaaa aagcaagaat cggcatcatc ggtcaaaatg gtctaggaaa aacaacgcta
     2221 atggaagtga ttgctggcgc taaagaagca acatctggca cggtgactac ccaaggaaaa
     2281 cttgcttaca tcaaacaact ttccactgat acaagtacga aaagcggcgg cgaaaaaaca
     2341 agaaaagcaa ttcaacatgc gatgcgccaa aacccaagtg ttctcctagc agatgaaccg
     2401 acaagcaacc tcgatgtcga aagcgtcaaa catttagaac gtcagtggag cgatttccac
     2461 ggtgcgctca taattatatc gcatgaccgt acctttttag atgcactttg tacagaaata
     2521 tgggaaatca aaaaccaaaa aattcacgta tacaaaggaa actaccacgc gtatttagaa
     2581 caaaaacaac aacaagaaaa ccaagcggaa ctcgtataca aagaatttaa aaacaaaaag
     2641 caacaactac aagcctccca aacacaccat gaaatcgaag caggtcgcat tgtcaaacct
     2701 ggaaaacgcc taaacaacaa agaagccagc gcgtttaaag ccggaaaagg cacacaacaa
     2761 aagaaacaac acagtaccat caaagcttta gaaaaacgaa ttgaacggct cggcaatgtc
     2821 gaaaaaccac atacaactaa accaatcaaa atgatcaccc cagacaatcg cgtcataaaa
     2881 aaaggtaata cgatactaag tgtcaaagaa acaacctacg agatcgcagg acgaaaacta
     2941 tttgaaacaa aagctttttc tattaaagca ggggataaag tggcgctaat cggtgaaaat
     3001 gcgagcggga aaactacatt tttaaaagaa ataatccaag aaaatcctaa tctcctatgt
     3061 aatccccaag cgaaaattgc ttatttcgac caagaattga atggattaaa ccaaacgaaa
     3121 tccctgttag aaaacatctc ggaaattagc gttcaaacca agcaagtaaa cagagaagta
     3181 ctaggtagca tgcattttaa agaaagcgat ttgcataagg aagtgcgcat gctctctggc
     3241 ggggaacgag tgaagttgct gctcagtatg ctcctcgtta gtgacgccaa tttcttgatt
     3301 cttgatgaac caaccaacta tttggatatc tatgcaatgg aagcgctgga aacgttaatc
     3361 aaacaatttg cggggacagt actattcgtt tcgcatgata gaacttttgt taaccacgtg
     3421 gcagaacaat tactcgtcat cgaaaataat gaaatgactt tccaccggat gactttcgcg
     3481 gaatatgaag aaagtaaagc gccaagtcgc atcacagaag aagataagtt gattttagaa
     3541 atgcgcatgt cagaaattgc agccaagctt atgcaaccga atttaaagcc cacagaaaaa
     3601 gccatgctcg aacaagatta tcaagaaatt atcacaaaaa gacaacaatt tagttaaatt
     3661 gttgtctttt tattcaagct aaataaaaaa tatagtcatt tatattttac ttgatttctg
     3721 caaaagatag gcttagaatc aaatagttat taaaaagagt aaagaaagaa ggaatcc
//
LOCUS       DASDXX010000435         2473 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate
            YA00087462-LMO-FOOD SAMN38563160-rid20479143.guided.262, whole
            genome shotgun sequence.
ACCESSION   DASDXX010000435 DASDXX010000000
VERSION     DASDXX010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38563160
            Sequence Read Archive: SRR27013257
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014438.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014438.1
            Genome Coverage       :: 98x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 11:43:52
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,080
            CDSs (total)                      :: 3,018
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 7 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38563160-rid20479143.guided.262"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="YA00087462-LMO-FOOD"
                     /isolation_source="Production environment"
                     /db_xref="taxon:1639"
                     /country="South Africa: Limpopo"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..116)
                     /locus_tag="U0280_003077"
     CDS             complement(<1..116)
                     /locus_tag="U0280_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HEM2272965.1"
                     /translation="MEGVGNKVIVLAGMIGAGKSSYTELIANELGTKAFYES"
     gene            223..603
                     /locus_tag="U0280_003078"
     CDS             223..603
                     /locus_tag="U0280_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM2272966.1"
                     /translation="MTKPLKLVYTENGFDTGSFLIDDKLTEYSPADLMLMSIASCSAI
                     VFRNILKKKRVNFTDLWVDATMERIPEEENRISAIHLHFKITGAALDPKALEKALKLT
                     PKYCSMVRSVEKSILVDESLEIMP"
     gene            668..2047
                     /gene="rlmD"
                     /locus_tag="U0280_003079"
     CDS             668..2047
                     /gene="rlmD"
                     /locus_tag="U0280_003079"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM2272967.1"
                     /translation="MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEE
                     VVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDI
                     VIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGSGQVETGLFGANSHQL
                     VPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLV
                     FITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKL
                     MELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVK
                     EVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRS
                     GCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVET
                     VVLLQLKDK"
     gene            2062..2463
                     /locus_tag="U0280_003080"
     CDS             2062..2463
                     /locus_tag="U0280_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance thiol transferase FosX"
                     /protein_id="HEM2272968.1"
                     /translation="MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKE
                     KFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQG
                     EGRSIYFYDFDNHLFELHAGTLEERLKRYHE"
BASE COUNT          837 a          479 c          487 g          670 t
ORIGIN      
        1 atgctttcat aaaatgcctt tgttccgagt tcatttgcga ttagctctgt atagctactt
       61 ttcccagcac caatcattcc tgctaaaaca atcactttat ttcctactcc ttccataaca
      121 tgagtagcct ccttttttgg tcgactatct gttcattata ctactaattt gcttaataag
      181 gagatttttt gtacgataaa agagaagaaa tgagggataa ccatgacaaa accattaaag
      241 ctagtttata ccgaaaatgg gtttgacaca ggaagttttt taatcgatga caaactgacc
      301 gaatattcac cagcggattt gatgttaatg tctattgcca gttgtagcgc cattgttttt
      361 cgtaacattt taaagaaaaa acgagtaaac tttaccgact tatgggtaga cgccacaatg
      421 gaacgcatcc cagaagaaga aaatcgtata agcgcgatac atcttcattt taaaataacc
      481 ggtgctgcct tggatccaaa agcacttgaa aaagcattaa aattaacacc gaaatactgt
      541 tcgatggttc gttctgtcga aaaaagcatc cttgtcgatg aaagtcttga aatcatgcca
      601 taaactactg acaagctgct gtttttttgt tagtattaat gaagacttgg aatgatggag
      661 gaaaataatg aatcaaaatc cagtagaaga aggacaaaaa ttcccgctaa ctattcggcg
      721 catgggaatc aacggggaag gaatcggcta ctttaaaaaa gcagttgtat ttgtacctgg
      781 cgcaattacc ggtgaagaag tagttgtcga agcggtcaaa gttcgtgatc gtttcaccga
      841 agcaaaatta aataaaattc gtaaaaaatc tccaaaccga gttaccgcac cttgcccagt
      901 ttacgaggcg tgtggtggtt gccagttgca acatgtggcc tatagcgccc aacttgaact
      961 aaaaagagat attgttattc aatcaatcga aaaacataca aaaatcgatc caaccaaatt
     1021 aaaaatccgc ccaacaatcg gaatggaaga cccatggcgt taccgtaata aaagccaatt
     1081 ccaaacaaga atggtaggca gtggtcaagt cgaaacaggg cttttcggtg ccaattctca
     1141 ccaacttgtt ccaattgaag attgtatcgt ccaacaaccc gttaccatca aagtaacgaa
     1201 ttttgttcgc gacttactag aaaaatacgg cgtgccaatt tatgatgaaa aagctggcag
     1261 tggtatcgtc cgaactatcg tcgttcgtac tggcgtgaaa accggcgaaa cacagctcgt
     1321 cttcattaca aatagtaaaa agttacctaa aaaacgcgaa atgcttgcag aaatcgaagc
     1381 agctcttccg gaagtcactt cgattatgca aaacgtgaat caagcaaaat cctcacttat
     1441 tttcggtgac gaaacgttcc ttttagcagg aaaagaaagc attgaagaga aattaatgga
     1501 actagaattc gatctatctg ctcgtgcctt tttccaatta aacccgttcc aaacagagcg
     1561 actttatcaa gaagtcgaaa aagcactcgt actaacaggc agtgaaacac tagtagatgc
     1621 ttattgcggt gttggaacaa tcggccaagc ttttgccgga aaagtaaaag aagttcgtgg
     1681 tatggatatt attccagaat ccattgaaga cgctaaacga aacgccgaga agaatggcat
     1741 cgaaaatgtt tattatgaag ttgggaaagc agaagacgta ttaccaaaat gggtaaatga
     1801 aggtttccgc ccagacgcag tcatcgttga cccaccaaga agcggctgtg accaaggcct
     1861 aataaaatca ttactagatg tggaagcaaa acaacttgtt tatgtatcct gtaatccatc
     1921 cacattagca cgtgacttag ctttactcgc gaagaaatat cgcattcgct atatgcaacc
     1981 cgtcgatatg ttcccgcaaa cagctcacgt ggaaaccgta gtactcttgc agttaaaaga
     2041 taaataaagg actggtggta catgatttca ggattaagcc atatcacttt aattgtgaaa
     2101 gatttgaata aaacaactgc tttcttacag aatattttta atgcagaaga aatctattct
     2161 agtggcgaca aaacattttc gctttccaaa gaaaaatttt ttctaatagc tggtttgtgg
     2221 atttgcatta tggaaggaga ttctttacaa gagcgaactt acaatcatat tgctttccaa
     2281 attcaatccg aggaagtgga tgaatatact gagcggatta aagctctcgg tgtggaaatg
     2341 aaaccagaac gtcccagagt ccaaggtgaa ggacgttcca tttattttta tgattttgat
     2401 aatcatctgt ttgaattaca cgctggtaca ttagaagaac gcttaaaaag gtatcacgaa
     2461 tagaaataac acc
//
